Citrus Sinensis ID: 043646
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | 2.2.26 [Sep-21-2011] | |||||||
| P99177 | 413 | Probable cysteine desulfu | yes | no | 0.553 | 0.837 | 0.252 | 2e-22 | |
| P63518 | 413 | Probable cysteine desulfu | yes | no | 0.553 | 0.837 | 0.252 | 2e-22 | |
| Q8NXH0 | 413 | Probable cysteine desulfu | yes | no | 0.553 | 0.837 | 0.252 | 2e-22 | |
| Q6GB11 | 413 | Probable cysteine desulfu | yes | no | 0.553 | 0.837 | 0.252 | 2e-22 | |
| Q6GIH2 | 413 | Probable cysteine desulfu | yes | no | 0.553 | 0.837 | 0.252 | 2e-22 | |
| Q5HHH0 | 413 | Probable cysteine desulfu | yes | no | 0.553 | 0.837 | 0.252 | 2e-22 | |
| Q8CTA4 | 413 | Probable cysteine desulfu | yes | no | 0.542 | 0.820 | 0.239 | 3e-20 | |
| Q5HQQ0 | 413 | Probable cysteine desulfu | yes | no | 0.542 | 0.820 | 0.239 | 4e-20 | |
| Q9K7A0 | 406 | Probable cysteine desulfu | yes | no | 0.556 | 0.857 | 0.252 | 4e-17 | |
| O51111 | 422 | Probable cysteine desulfu | yes | no | 0.628 | 0.931 | 0.239 | 1e-15 |
| >sp|P99177|CSD_STAAN Probable cysteine desulfurase OS=Staphylococcus aureus (strain N315) GN=csd PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 58/404 (14%)
Query: 69 FDYSFGKRRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124
D +RL Y D TA+ ++ L +EDY + N H +G T
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKR----YNSNVHRGVHTLGSLATDGYE 73
Query: 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
A ++R + + IIF GTTA+I + G EE +
Sbjct: 74 NARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYG-------------DANVEEGDEI 119
Query: 185 FLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240
+ EHH+N++ W+Q A + I + +G L+IE ++ + + + + +
Sbjct: 120 VVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTIN-----DKTKIVAIA 174
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL 300
SNV G +D ++IA + HQ+G D A + P++K++++ N D Y + HK L
Sbjct: 175 HISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML 231
Query: 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360
G G G+L + L Q P GG +++V+ +D D+ + GTP I
Sbjct: 232 GPTGI-GVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIA 284
Query: 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420
Q I A A E IG++ I K E A ++ + I++ G +R +++F +
Sbjct: 285 QAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL- 343
Query: 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT D G+ R G CA P
Sbjct: 344 ---------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain N315) (taxid: 158879) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 7 |
| >sp|P63518|CSD_STAAM Probable cysteine desulfurase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=csd PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 58/404 (14%)
Query: 69 FDYSFGKRRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124
D +RL Y D TA+ ++ L +EDY + N H +G T
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKR----YNSNVHRGVHTLGSLATDGYE 73
Query: 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
A ++R + + IIF GTTA+I + G EE +
Sbjct: 74 NARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYG-------------DANVEEGDEI 119
Query: 185 FLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240
+ EHH+N++ W+Q A + I + +G L+IE ++ + + + + +
Sbjct: 120 VVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTIN-----DKTKIVAIA 174
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL 300
SNV G +D ++IA + HQ+G D A + P++K++++ N D Y + HK L
Sbjct: 175 HISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML 231
Query: 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360
G G G+L + L Q P GG +++V+ +D D+ + GTP I
Sbjct: 232 GPTGI-GVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIA 284
Query: 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420
Q I A A E IG++ I K E A ++ + I++ G +R +++F +
Sbjct: 285 QAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL- 343
Query: 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT D G+ R G CA P
Sbjct: 344 ---------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q8NXH0|CSD_STAAW Probable cysteine desulfurase OS=Staphylococcus aureus (strain MW2) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 58/404 (14%)
Query: 69 FDYSFGKRRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124
D +RL Y D TA+ ++ L +EDY + N H +G T
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKR----YNSNVHRGVHTLGSLATDGYE 73
Query: 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
A ++R + + IIF GTTA+I + G EE +
Sbjct: 74 NARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYG-------------DANVEEGDEI 119
Query: 185 FLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240
+ EHH+N++ W+Q A + I + +G L+IE ++ + + + + +
Sbjct: 120 VVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTIN-----DKTKIVAIA 174
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL 300
SNV G +D ++IA + HQ+G D A + P++K++++ N D Y + HK L
Sbjct: 175 HISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML 231
Query: 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360
G G G+L + L Q P GG +++V+ +D D+ + GTP I
Sbjct: 232 GPTGI-GVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIA 284
Query: 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420
Q I A A E IG++ I K E A ++ + I++ G +R +++F +
Sbjct: 285 QAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL- 343
Query: 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT D G+ R G CA P
Sbjct: 344 ---------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6GB11|CSD_STAAS Probable cysteine desulfurase OS=Staphylococcus aureus (strain MSSA476) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 58/404 (14%)
Query: 69 FDYSFGKRRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124
D +RL Y D TA+ ++ L +EDY + N H +G T
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKR----YNSNVHRGVHTLGSLATDGYE 73
Query: 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
A ++R + + IIF GTTA+I + G EE +
Sbjct: 74 NARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYG-------------DANVEEGDEI 119
Query: 185 FLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240
+ EHH+N++ W+Q A + I + +G L+IE ++ + + + + +
Sbjct: 120 VVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTIN-----DKTKIVAIA 174
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL 300
SNV G +D ++IA + HQ+G D A + P++K++++ N D Y + HK L
Sbjct: 175 HISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML 231
Query: 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360
G G G+L + L Q P GG +++V+ +D D+ + GTP I
Sbjct: 232 GPTGI-GVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIA 284
Query: 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420
Q I A A E IG++ I K E A ++ + I++ G +R +++F +
Sbjct: 285 QAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL- 343
Query: 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT D G+ R G CA P
Sbjct: 344 ---------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6GIH2|CSD_STAAR Probable cysteine desulfurase OS=Staphylococcus aureus (strain MRSA252) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 58/404 (14%)
Query: 69 FDYSFGKRRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124
D +RL Y D TA+ ++ L +EDY + N H +G T
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKR----YNSNVHRGVHTLGSLATDGYE 73
Query: 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
A ++R + + IIF GTTA+I + G EE +
Sbjct: 74 NARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYG-------------DANVEEGDEI 119
Query: 185 FLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240
+ EHH+N++ W+Q A + I + +G L+IE ++ + + + + +
Sbjct: 120 VVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTIN-----DKTKIVAIA 174
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL 300
SNV G +D ++IA + HQ+G D A + P++K++++ N D Y + HK L
Sbjct: 175 HISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML 231
Query: 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360
G G G+L + L Q P GG +++V+ +D D+ + GTP I
Sbjct: 232 GPTGI-GVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIA 284
Query: 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420
Q I A A E IG++ I K E A ++ + I++ G +R +++F +
Sbjct: 285 QAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL- 343
Query: 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT D G+ R G CA P
Sbjct: 344 ---------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q5HHH0|CSD_STAAC Probable cysteine desulfurase OS=Staphylococcus aureus (strain COL) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 169/404 (41%), Gaps = 58/404 (14%)
Query: 69 FDYSFGKRRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124
D +RL Y D TA+ ++ L +EDY + N H +G T
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKR----YNSNVHRGVHTLGSLATDGYE 73
Query: 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
A ++R + + IIF GTTA+I + G EE +
Sbjct: 74 NARETVRRFINAKYFEEIIFT-RGTTASINLVAHSYG-------------DANVEEGDEI 119
Query: 185 FLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240
+ EHH+N++ W+Q A + I + +G L+IE ++ + + + + +
Sbjct: 120 VVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTIN-----DKTKIVAIA 174
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL 300
SNV G +D ++IA + HQ+G D A + P++K++++ N D Y + HK L
Sbjct: 175 HISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML 231
Query: 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360
G G G+L + L Q P GG +++V+ +D D+ + GTP I
Sbjct: 232 GPTGI-GVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIA 284
Query: 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420
Q I A A E IG++ I K E A ++ + I++ G +R +++F +
Sbjct: 285 QAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL- 343
Query: 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT D G+ R G CA P
Sbjct: 344 ---------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain COL) (taxid: 93062) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q8CTA4|CSD_STAES Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 170/397 (42%), Gaps = 58/397 (14%)
Query: 76 RRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131
+RL Y D TA+ ++ L ++DY + N H +G T A ++
Sbjct: 25 KRLAYLDSTATSQTPVQVLNVLDDYYKR----YNSNVHRGVHTLGSLATDGYENARETVR 80
Query: 132 RCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH 191
R + + IIF GTTA+I + G S + ++T + EH
Sbjct: 81 RFINAKYFEEIIFT-RGTTASINIVAHSYGDANISEGDEIVVTEM-------------EH 126
Query: 192 HSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247
H+N++ W+Q A + I + +G L ++ +++ + + + + + SNV G
Sbjct: 127 HANIVPWQQLAKRKNATLKFIPMTKDGELQLDDIKATIN-----DKTKIVAIAHVSNVLG 181
Query: 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPG 307
+D ++IA++ H++G D A S P++ ++++ + D Y + HK LG G G
Sbjct: 182 TINDVKTIAKIAHEHGAVISVDGAQSAPHMALDMQDIDADFYS---FSGHKMLGPTGI-G 237
Query: 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAAL 367
+L + L Q + P GG +++V+ +D D+ + GTP I Q I A
Sbjct: 238 VLYGKRELLQ--NMEPVEFGGDMIDFVSKYDST----WADLPTKFEAGTPLIAQAIGLAE 291
Query: 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427
A E +G+ I + E E A ++L +++ G +R +++F +
Sbjct: 292 AIHYIENLGFNAIHQHEKELTEYAYEQMLTIDGLEIYGPPKDRRAGVITFNL-------- 343
Query: 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+H VAT D G+ R G CA P
Sbjct: 344 --------ADIHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q5HQQ0|CSD_STAEQ Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 95/397 (23%), Positives = 170/397 (42%), Gaps = 58/397 (14%)
Query: 76 RRLTYADHTASGRS----LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131
+RL Y D TA+ ++ L ++DY + N H +G T A ++
Sbjct: 25 KRLAYLDSTATSQTPVQVLNVLDDYYKR----YNSNVHRGVHTLGSLATDGYENARETVR 80
Query: 132 RCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH 191
R + + IIF GTTA+I + G S + ++T + EH
Sbjct: 81 RFINAKYFEEIIFT-RGTTASINIVAHSYGDANISEGDEIVVTEM-------------EH 126
Query: 192 HSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247
H+N++ W+Q A + I + +G L ++ +++ + + + + + SNV G
Sbjct: 127 HANIVPWQQLAKRKNATLKFIPMTKDGELQLDDIKATIN-----DKTKIVAIAHVSNVLG 181
Query: 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPG 307
+D ++IA++ H++G D A S P++ ++++ + D Y + HK LG G G
Sbjct: 182 TINDVKTIAKIAHEHGAVISVDGAQSAPHMALDMQDIDADFYS---FSGHKMLGPTGI-G 237
Query: 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAAL 367
+L + L Q + P GG +++V+ +D D+ + GTP I Q I A
Sbjct: 238 VLYGKRELLQ--NMEPVEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIGLAE 291
Query: 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427
A E +G+ I + E E A ++L +++ G +R +++F +
Sbjct: 292 AIHYIENLGFNAIHQHEKELTEYAYEQMLTIDGLEIYGPPKDRRAGVITFNL-------- 343
Query: 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+H VAT D G+ R G CA P
Sbjct: 344 --------ADIHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q9K7A0|CSD_BACHD Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=csd PE=3 SV=2 | Back alignment and function description |
|---|
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 164/400 (41%), Gaps = 52/400 (13%)
Query: 69 FDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASN 128
D L Y D A+ + + + + + + N H +G T A
Sbjct: 13 LDQEVNGSPLVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTLATDGYEGARE 72
Query: 129 YIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGP 188
I+R + + IIF GTT AI + S R L DE + + P
Sbjct: 73 KIRRFIHASSTEEIIFT-RGTTTAIN-------LVAASYGRANL--GEGDE----IVITP 118
Query: 189 YEHHSNLLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244
EHHSN++ W+Q + A + + L +G + IE + + +++ + + SN
Sbjct: 119 MEHHSNIIPWQQVAKATGATLTYLPLQKDGTIKIEDVEKTI-----SEKTKIVAIMHVSN 173
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG 304
V G + + IA + H++G D A S P++KI+++ G D + HK + GP
Sbjct: 174 VLGTINPVKEIAEIAHRHGAIMLVDGAQSAPHMKIDVQEL---GCDFFAFSGHK-MAGPT 229
Query: 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR 364
G+L KA L P GG +++V +D +++ + GGTP I I
Sbjct: 230 GIGVLYGKKA--HLEKMEPVEFGGEMIDFVGLYDST----WKELPWKFEGGTPIIAGAIG 283
Query: 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN 424
A E IG + I+K E + AL R+ + + V G KR +++F +
Sbjct: 284 LGAAIDFLEDIGLDEIEKHEHELAQYALDRLSELEGMTVYGPQ--KRAGLVTFNI----- 336
Query: 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
+ +H VAT+ D GI R G CA P
Sbjct: 337 -----------EDVHPHDVATVL-DADGIAVRAGHHCAQP 364
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|O51111|CSD_BORBU Probable cysteine desulfurase OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 115/480 (23%), Positives = 193/480 (40%), Gaps = 87/480 (18%)
Query: 49 KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGR--------SLRYIEDYIINN 100
K + EK+ +LR + +FD + + Y D+ A+ + ++ Y E+Y
Sbjct: 7 KSNVEKVKFLRKDFPILNKKFD----NKYIIYFDNAATSQKPKNVIYSNVEYYENY---- 58
Query: 101 VLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVM 160
N H S + + + + +K + A IIF +GTT I +
Sbjct: 59 ----NANVHRSGHKFAIQSSIKIEKTRELVKNFINAESAKNIIFT-SGTTDGINTI---- 109
Query: 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-----DDNGL 215
S K +DE + L EH+SNLL W +LA + + + ++ G+
Sbjct: 110 ---ASSFFYSKYFKK-KDE----IILTTLEHNSNLLPW-VNLANLANLKIKLAKFNEMGI 160
Query: 216 LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275
+ E + + ++ L S S +N G +D SI ++ +Y D A P
Sbjct: 161 ITPEEIEKLI-----TEKTKLISISGINNTLGTINDLESIGKIAKKYNICLFVDAAQMAP 215
Query: 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVN 335
++KI+++ G D + + HK L G GIL IS + + S S GG TV +
Sbjct: 216 HIKIDVKKI---GCDFLVFSGHKMLAPTGI-GILYISNNMAEKLHS--SKLGGNTVEEIF 269
Query: 336 AFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395
+EK D + GTP I +I A + I + I + + IE + ++
Sbjct: 270 IENEKIKFKASDSPNKFESGTPNIAGIIGLEEAIKYIDNISMDFILEHDKQLIEYGVKKL 329
Query: 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA 455
++ + NT++KR +I+SF V K +H + T D GI
Sbjct: 330 QELDEVEFILNTNLKRNSIISFTV----------------KNIHSHDIETYL-DTMGIAT 372
Query: 456 RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE-FILA 514
R G C+ +AF + K +L RI+F +Y + EE + FIL
Sbjct: 373 RAGRTCS------YVAF-------FPENLNKDHL------LRISFYFYNTQEEIDNFILG 413
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) (taxid: 224326) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| 225431495 | 658 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.948 | 0.646 | 0.0 | |
| 255552410 | 633 | cysteine desulfurylase, putative [Ricinu | 0.974 | 0.962 | 0.653 | 0.0 | |
| 359477024 | 636 | PREDICTED: probable cysteine desulfurase | 0.902 | 0.886 | 0.668 | 0.0 | |
| 224095928 | 488 | predicted protein [Populus trichocarpa] | 0.777 | 0.995 | 0.784 | 0.0 | |
| 296088558 | 670 | unnamed protein product [Vitis vinifera] | 0.892 | 0.832 | 0.674 | 0.0 | |
| 449461845 | 644 | PREDICTED: probable cysteine desulfurase | 0.915 | 0.888 | 0.650 | 0.0 | |
| 449530392 | 644 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.888 | 0.649 | 0.0 | |
| 357519939 | 645 | Cysteine desulfurase [Medicago truncatul | 0.982 | 0.951 | 0.600 | 0.0 | |
| 357519937 | 635 | hypothetical protein MTR_8g093550 [Medic | 0.913 | 0.899 | 0.643 | 0.0 | |
| 224130554 | 491 | predicted protein [Populus trichocarpa] | 0.777 | 0.989 | 0.767 | 0.0 |
| >gi|225431495|ref|XP_002274844.1| PREDICTED: uncharacterized protein LOC100265977 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2201), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/657 (64%), Positives = 500/657 (76%), Gaps = 33/657 (5%)
Query: 1 MEIKQLIFRDTTSAPTKGHSNSKTRSESTSSTRQTCSEFKNDHHP-----------PHSK 49
ME++QL+F ++ SAP S+ KT SS + + H P +
Sbjct: 1 MELEQLLFGESISAPKADRSHVKTYETMASSISSSSKDSDELSHASESFTMIDMSVPKTV 60
Query: 50 PSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTH 109
+E+KLAWLRSQI+ D EF +G RR+TYADHTASGR L YIE+YI+NNVLPFYGNTH
Sbjct: 61 SAEKKLAWLRSQIVVGDGEFKSPYGLRRVTYADHTASGRCLHYIENYIVNNVLPFYGNTH 120
Query: 110 TSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169
T DS+VG R TKMVHEA+ Y+K+CLGG Q DA++FCG+GTTAAIKRLQEVMGIT PSIMR
Sbjct: 121 TCDSFVGDRTTKMVHEATKYVKKCLGGKQDDALVFCGSGTTAAIKRLQEVMGITSPSIMR 180
Query: 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK 229
++++ +LR EERWVVF+GPYEHHSNLLSWRQSLAEVVEIGLD+NGL+D++AL+ QLE YK
Sbjct: 181 ERVLKTLRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDENGLIDMKALKQQLESYK 240
Query: 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289
RP+LGSFSACSNVTGIY++TR++A++LHQ+G F CFDFAASGPYV+I++RS IDGY
Sbjct: 241 YTNRPLLGSFSACSNVTGIYTNTRALAKILHQHGAFVCFDFAASGPYVEIDMRSGEIDGY 300
Query: 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349
DAIFL+ HKFLGGPGTPGILL+SK LY L SSPPSTCGGGTV +VN F+EKDTLY+++IE
Sbjct: 301 DAIFLSPHKFLGGPGTPGILLMSKVLYNLASSPPSTCGGGTVAFVNGFNEKDTLYVDEIE 360
Query: 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV 409
ERE+ GTP IVQ I+ AL FWVKEYIGY VI++ E +YIE+AL R+LPN NI+VLGNTS
Sbjct: 361 EREDAGTPPIVQKIKTALTFWVKEYIGYNVIEQMEHMYIEAALERLLPNPNIKVLGNTSA 420
Query: 410 KRQAILSFLVYSTTNSSPENMK-----IE------------RNKPLHGPFVATLFNDLFG 452
KRQAILSFLVYSTTNSS + MK IE R KPLHGPFVA L NDLFG
Sbjct: 421 KRQAILSFLVYSTTNSSSDGMKDSRGDIEGRFYMWRETGNKRGKPLHGPFVAKLLNDLFG 480
Query: 453 IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512
IQARGGCACAGPYGH+LL D+TRSL RSAI G GVKPGWTRI+FPYYMS EEFEFI
Sbjct: 481 IQARGGCACAGPYGHSLLNVDETRSLAFRSAIHNGNNGVKPGWTRISFPYYMSIEEFEFI 540
Query: 513 LAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIKD-LIDKETNNNINN-PLASAIQDLR 570
LAALEFIA YG RFLPLY+FN K GNW +KA+KD L KE N N LA +Q
Sbjct: 541 LAALEFIATYGQRFLPLYNFNWKTGNWTFKKKALKDALAGKENNGNFGGLSLARGMQASI 600
Query: 571 I---SEKHRNRDTEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNILYFR 624
+ SE N E+ + INKY SYL+ AK IA LL +FP R + EDID N+ FR
Sbjct: 601 MSNQSEAQHNNADENDEIINKYTSYLETAKRIASLLEKFPPHRRVPEDIDLNLCTFR 657
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552410|ref|XP_002517249.1| cysteine desulfurylase, putative [Ricinus communis] gi|223543620|gb|EEF45149.1| cysteine desulfurylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/649 (65%), Positives = 498/649 (76%), Gaps = 40/649 (6%)
Query: 1 MEIKQLIFRDTTSAPTKGHSNS--KTRSESTSSTRQTCSEFKNDH------------HPP 46
ME++Q I R+T+ + +S S S ST+STR S +D P
Sbjct: 1 MELEQPISRETSGTVHEINSTSIRNGPSRSTNSTRTVSSALSSDLCNRSESFRTLDIGVP 60
Query: 47 HSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYG 106
S SE +LAWLRSQIIG+DVEF+ FGKRRLTYADHTASGRSL YIE++IINNVLPFYG
Sbjct: 61 KSISSERRLAWLRSQIIGDDVEFESPFGKRRLTYADHTASGRSLHYIENFIINNVLPFYG 120
Query: 107 NTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166
NTHT DSYVG R TKMVHEA+ YIKR LGGG+ DAIIFCG+GTTAAIKRLQEVMGI VPS
Sbjct: 121 NTHTCDSYVGHRTTKMVHEATQYIKRSLGGGEEDAIIFCGSGTTAAIKRLQEVMGIAVPS 180
Query: 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLE 226
IMRD++I L +EERWVVF+GPYEHHSNLLSWRQSLAEVVEIGL+D+GL+DIEAL L+
Sbjct: 181 IMRDRIIKCLSNEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLNDSGLIDIEALEKLLD 240
Query: 227 LYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNI 286
Y+ A RP+LGSFSA SNVTGI+S TR +A+LLH+YGGF CFDFAASGPYV+I++R +
Sbjct: 241 SYRKANRPILGSFSASSNVTGIFSKTRGLAQLLHRYGGFVCFDFAASGPYVEIDMRYGEV 300
Query: 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346
DGYDAIFL+ HKFLGGPG+PGILL+SKALYQL SPPSTCGGGTV YVN F++KDTLYL+
Sbjct: 301 DGYDAIFLSPHKFLGGPGSPGILLMSKALYQLKYSPPSTCGGGTVCYVNGFNDKDTLYLD 360
Query: 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGN 406
DIEERENGGTPQI+Q IRAALAFWVKEYIGY VI++QE YI AL R+ N+NI +LGN
Sbjct: 361 DIEERENGGTPQIIQTIRAALAFWVKEYIGYNVIEEQEKNYISKALERVKSNKNIWILGN 420
Query: 407 TSVKRQAILSFLVYSTTNSSPENMKI----------ERNKPLHGPFVATLFNDLFGIQAR 456
TS +RQAILSFL+YSTTNSS + K +R+KPLHG FVA+L NDLFGIQ+R
Sbjct: 421 TSAERQAILSFLIYSTTNSSSSSSKDESSSSSKTGNKRDKPLHGAFVASLLNDLFGIQSR 480
Query: 457 GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516
GGCACAGPYGH LL + SL +RSAI +GY+G KPGWTRI+FPYYMSN+EFEFI+AA+
Sbjct: 481 GGCACAGPYGHVLLDISEANSLALRSAIHQGYMGAKPGWTRISFPYYMSNQEFEFIMAAV 540
Query: 517 EFIAAYGHRFLPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNPLASAIQDLRISEKHR 576
EF+A YG RFLPLY FN K G W +KA KDL+ + N P+A+ ++
Sbjct: 541 EFVAIYGQRFLPLYGFNFKTGTWYFKKKAFKDLLVGKENKCNTFPMAAVGGEI------- 593
Query: 577 NRDTEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNILYFRI 625
INKYASYL+ AK IA LLP+FP R L ED+D N+LYFR+
Sbjct: 594 ---------INKYASYLEIAKHIANLLPKFPSSRKLPEDLDYNLLYFRV 633
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477024|ref|XP_002274757.2| PREDICTED: probable cysteine desulfurase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/595 (66%), Positives = 477/595 (80%), Gaps = 31/595 (5%)
Query: 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY 105
P++ S++KL+WLRSQI+G D EF FG RRLTYADHTASGR LRYIE+YI +NVLPFY
Sbjct: 58 PNTNSSQKKLSWLRSQIVGGDAEFSSPFGVRRLTYADHTASGRCLRYIENYINDNVLPFY 117
Query: 106 GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165
GNTHT DS+VG R TKMVHEA+ YI++CLGG Q DA++FCG+GTTAAIKRLQEVMGITVP
Sbjct: 118 GNTHTCDSFVGSRTTKMVHEATRYIRKCLGGRQDDALMFCGSGTTAAIKRLQEVMGITVP 177
Query: 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL 225
S++R++++ + R EERWVVF+GPYEHHSNLLSWRQSLAEVVEIGLDD+GLLD+EALR QL
Sbjct: 178 SVLRERVLKTFRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDDDGLLDMEALRLQL 237
Query: 226 ELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRN 285
E Y+ + RP+LGSFSACSNVTGI++DTR++A+LLH+YGGF CFDFAASGPYV+I++RS +
Sbjct: 238 ESYRRSNRPLLGSFSACSNVTGIFTDTRALAQLLHRYGGFVCFDFAASGPYVEIDMRSGD 297
Query: 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345
ID YDAIFL+ HKFLGGPG+PGILL+SKALYQLG S PSTCGGG V++VN F+EKDTLYL
Sbjct: 298 IDCYDAIFLSPHKFLGGPGSPGILLMSKALYQLGCSAPSTCGGGIVDFVNGFNEKDTLYL 357
Query: 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405
EDIE RE+ GTP I+Q RAALAFWVKEY+GY VI+++E+ Y E+AL R+LPN NI VLG
Sbjct: 358 EDIEGREDVGTPPIIQKTRAALAFWVKEYVGYNVIEEEENNYTEAALERLLPNPNIWVLG 417
Query: 406 NTSVKRQAILSFLVYSTTNSSPENMKIE---------------RNKPLHGPFVATLFNDL 450
NT+ KRQAILSFLVYSTTNS+ ++M E ++KPLHGPFVA L NDL
Sbjct: 418 NTTAKRQAILSFLVYSTTNSASDDMSREETKGRFYMWRETGNRKDKPLHGPFVAKLLNDL 477
Query: 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510
FGIQARGGCACAGPYGH+LL D+T+SL RSAIQKGY G+KPGWTRI+FPYYMS+EEFE
Sbjct: 478 FGIQARGGCACAGPYGHSLLKVDETQSLAFRSAIQKGYSGIKPGWTRISFPYYMSSEEFE 537
Query: 511 FILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNPLASAIQDLR 570
FIL ALEFIA YG RFLPLYHFN K G+W +KA+KD + P S+I ++
Sbjct: 538 FILDALEFIATYGQRFLPLYHFNWKTGSWSFRKKALKDTSTPTLSLFKAMPAFSSINEI- 596
Query: 571 ISEKHRNRDTEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNILYFRI 625
I++YASYL A IA LL +FP R + EDID N++ FR+
Sbjct: 597 ---------------ISRYASYLATANKIASLLEKFPPHRRIPEDIDVNLITFRV 636
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095928|ref|XP_002310507.1| predicted protein [Populus trichocarpa] gi|222853410|gb|EEE90957.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/487 (78%), Positives = 432/487 (88%), Gaps = 1/487 (0%)
Query: 53 EKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD 112
+KLAWLRSQI+GND+EFD FGKRRLTYADHTASGRSLRYIE++IINNVLPFYGNTHTSD
Sbjct: 1 KKLAWLRSQIVGNDIEFDSPFGKRRLTYADHTASGRSLRYIENFIINNVLPFYGNTHTSD 60
Query: 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKL 172
S+VG R TKM+HEA+ YIK+CLGGGQ DAI+FCG+GTTAAIKRLQEV+GI VPS R++L
Sbjct: 61 SHVGHRTTKMLHEAAEYIKKCLGGGQNDAIMFCGSGTTAAIKRLQEVIGIAVPSTFRERL 120
Query: 173 ITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232
I L +EERWVVF+GPYEHHSNLLSWRQSLAEV+EIGLDDNGL+DIE LR +LE Y+ A
Sbjct: 121 IKCLSNEERWVVFVGPYEHHSNLLSWRQSLAEVIEIGLDDNGLIDIEDLRRRLETYRHAN 180
Query: 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAI 292
RP+LGSFSA SNVTGIYSDTR I++LLHQYGGFACFDFAASGPYVKIN+RS +DGYD I
Sbjct: 181 RPILGSFSASSNVTGIYSDTRGISQLLHQYGGFACFDFAASGPYVKINMRSGEVDGYDGI 240
Query: 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352
FL+ HKFLGGPG+PGILL+SKALYQLGSS PSTCGGGTVNYVN F EKDTLYL DIEERE
Sbjct: 241 FLSPHKFLGGPGSPGILLMSKALYQLGSSAPSTCGGGTVNYVNGFSEKDTLYLNDIEERE 300
Query: 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQ 412
+GGTPQI+Q IRA+LAFW+KEYI Y+VI+KQED+YIE AL R+LPN+NI VLGNT+ KRQ
Sbjct: 301 SGGTPQIIQTIRASLAFWIKEYISYQVIRKQEDIYIEKALNRLLPNKNIWVLGNTTAKRQ 360
Query: 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472
AI+SFL+YSTTNSS M I KPLHGPF+A L ND+FGIQARGGCACAGPYGH LL
Sbjct: 361 AIVSFLIYSTTNSSSTGM-IHEGKPLHGPFIAALLNDVFGIQARGGCACAGPYGHNLLHV 419
Query: 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHF 532
++ +L IRSAI+KGY GVKPGWTR++FPYYM NEEFEFIL A+EF+A YGHRFLPLYHF
Sbjct: 420 NEPSTLAIRSAIEKGYAGVKPGWTRLSFPYYMFNEEFEFILTAIEFLAIYGHRFLPLYHF 479
Query: 533 NVKAGNW 539
N K G W
Sbjct: 480 NWKTGCW 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088558|emb|CBI37549.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/581 (67%), Positives = 467/581 (80%), Gaps = 23/581 (3%)
Query: 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY 105
P++ S++KL+WLRSQI+G D EF FG RRLTYADHTASGR LRYIE+YI +NVLPFY
Sbjct: 112 PNTNSSQKKLSWLRSQIVGGDAEFSSPFGVRRLTYADHTASGRCLRYIENYINDNVLPFY 171
Query: 106 GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165
GNTHT DS+VG R TKMVHEA+ YI++CLGG Q DA++FCG+GTTAAIKRLQEVMGITVP
Sbjct: 172 GNTHTCDSFVGSRTTKMVHEATRYIRKCLGGRQDDALMFCGSGTTAAIKRLQEVMGITVP 231
Query: 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL 225
S++R++++ + R EERWVVF+GPYEHHSNLLSWRQSLAEVVEIGLDD+GLLD+EALR QL
Sbjct: 232 SVLRERVLKTFRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDDDGLLDMEALRLQL 291
Query: 226 ELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRN 285
E Y+ + RP+LGSFSACSNVTGI++DTR++A+LLH+YGGF CFDFAASGPYV+I++RS +
Sbjct: 292 ESYRRSNRPLLGSFSACSNVTGIFTDTRALAQLLHRYGGFVCFDFAASGPYVEIDMRSGD 351
Query: 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345
ID YDAIFL+ HKFLGGPG+PGILL+SKALYQLG S PSTCGGG V++VN F+EKDTLYL
Sbjct: 352 IDCYDAIFLSPHKFLGGPGSPGILLMSKALYQLGCSAPSTCGGGIVDFVNGFNEKDTLYL 411
Query: 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405
EDIE RE+ GTP I+Q RAALAFWVKEY+GY VI+++E+ Y E+AL R+LPN NI VLG
Sbjct: 412 EDIEGREDVGTPPIIQKTRAALAFWVKEYVGYNVIEEEENNYTEAALERLLPNPNIWVLG 471
Query: 406 NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465
NT+ KRQAILSFL PLHGPFVA L NDLFGIQARGGCACAGPY
Sbjct: 472 NTTAKRQAILSFL------------------PLHGPFVAKLLNDLFGIQARGGCACAGPY 513
Query: 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525
GH+LL D+T+SL RSAIQKGY G+KPGWTRI+FPYYMS+EEFEFIL ALEFIA YG R
Sbjct: 514 GHSLLKVDETQSLAFRSAIQKGYSGIKPGWTRISFPYYMSSEEFEFILDALEFIATYGQR 573
Query: 526 FLPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNPLASAIQD-LRISEKHRNRDTEHLK 584
FLPLYHFN K G+W +KA+KD + P S+I D R+ N+D +
Sbjct: 574 FLPLYHFNWKTGSWSFRKKALKDTSTPTLSLFKAMPAFSSISDGSRLHTHAGNKD----E 629
Query: 585 KINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNILYFRI 625
I++YASYL A IA LL +FP R + EDID N++ FR+
Sbjct: 630 IISRYASYLATANKIASLLEKFPPHRRIPEDIDVNLITFRV 670
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461845|ref|XP_004148652.1| PREDICTED: probable cysteine desulfurase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/604 (65%), Positives = 470/604 (77%), Gaps = 32/604 (5%)
Query: 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY 105
P S EE++ WLRSQIIG + E D FG+RRL YADHTASGRSLRYIED+I+ VLPFY
Sbjct: 49 PFSDRVEERMGWLRSQIIGGEAEIDSPFGERRLCYADHTASGRSLRYIEDFILRKVLPFY 108
Query: 106 GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165
GNTHT DSYVG TKMVH+A+ YIKRCLGGG+ +AI+FCG GTT+AIKRLQEVMGI VP
Sbjct: 109 GNTHTCDSYVGHHTTKMVHDATTYIKRCLGGGEEEAILFCGQGTTSAIKRLQEVMGIAVP 168
Query: 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL 225
SI+R+++I +L++EERWVVF+GPYEHHSNLLSWRQSLAEVVEIG+D+NGLLD E LRSQL
Sbjct: 169 SILRERVIETLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMDENGLLDFEMLRSQL 228
Query: 226 E-LYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR 284
E KA RP+LGSFSACSNVTGIYSDT++IA L+HQYGG CFDFAASGPYV+I+++S
Sbjct: 229 EACKKAGNRPILGSFSACSNVTGIYSDTKAIATLIHQYGGHVCFDFAASGPYVQIDMKSG 288
Query: 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344
IDGYDAIFL+THKFLGGPG+PGILL++K+LY+L SSPPSTCGGGTV YVN F EKDTLY
Sbjct: 289 EIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVTYVNGFTEKDTLY 348
Query: 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL 404
E+IEERENGGTPQI+ +IRAALAFWVKEYIGY+ I+KQE YIE AL R+LPN++I +L
Sbjct: 349 YENIEERENGGTPQIIGIIRAALAFWVKEYIGYQEIEKQEHRYIERALKRLLPNRSISIL 408
Query: 405 GNTSVKRQAILSFLVYSTTNSSPENMKIE-----------------------RNKPLHGP 441
G+TS KRQAILSF++YS+TN+S N + R KPLHGP
Sbjct: 409 GSTSTKRQAILSFIIYSSTNNSLPNCITDMLGNPNSREKVKKLYMWEETGSMRAKPLHGP 468
Query: 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501
FVA L +DLFG+QARGGC+CAGPYGH LL D+ S R+AI KGY G+KPGWTR++FP
Sbjct: 469 FVAALLSDLFGVQARGGCSCAGPYGHKLLNIDEACSQAYRTAIAKGYEGIKPGWTRVSFP 528
Query: 502 YYMSNEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNP 561
YYMSNEEFEFIL ALEFIA YG RFLPLY FN++ G+W +K + DL+ KE
Sbjct: 529 YYMSNEEFEFILKALEFIADYGQRFLPLYAFNLRNGSWTLKEKELTDLLGKEN------- 581
Query: 562 LASAIQDLRISEKHRNRDTEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNIL 621
SA + N + + + K+ SYL++AK IA LLP+FP +R L EDI+ ++L
Sbjct: 582 -YSASHIFAFKNQCTNAEAKLAAIVYKHKSYLESAKRIANLLPKFPPERVLHEDIESSLL 640
Query: 622 YFRI 625
FRI
Sbjct: 641 TFRI 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530392|ref|XP_004172179.1| PREDICTED: uncharacterized protein LOC101232076 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/604 (64%), Positives = 470/604 (77%), Gaps = 32/604 (5%)
Query: 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY 105
P S EE++ WLRSQIIG + E D FG+RRL YADHTASGRSLRYIED+I+ VLPFY
Sbjct: 49 PFSDRVEERMGWLRSQIIGGEAEIDSPFGERRLCYADHTASGRSLRYIEDFILRKVLPFY 108
Query: 106 GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165
GNTHT DSYVG TKMV++A+ YIKRCLGGG+ +AI+FCG GTT+AIKRLQEVMGI VP
Sbjct: 109 GNTHTCDSYVGHHTTKMVNDATTYIKRCLGGGEEEAILFCGQGTTSAIKRLQEVMGIAVP 168
Query: 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL 225
SI+R+++I +L++EERWVVF+GPYEHHSNLLSWRQSLAEVVEIG+D+NGLLD E LRSQL
Sbjct: 169 SILRERVIETLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMDENGLLDFEMLRSQL 228
Query: 226 E-LYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR 284
E KA RP+LGSFSACSNVTGIYSDT++IA L+HQYGG CFDFAASGPYV+I+++S
Sbjct: 229 EACKKAGNRPILGSFSACSNVTGIYSDTKAIATLIHQYGGHVCFDFAASGPYVQIDMKSG 288
Query: 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344
IDGYDAIFL+THKFLGGPG+PGILL++K+LY+L SSPPSTCGGGTV YVN F EKDTLY
Sbjct: 289 EIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVTYVNGFTEKDTLY 348
Query: 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL 404
E+IEERENGGTPQI+ +IRAALAFWVKEYIGY+ I+KQE YIE AL R+LPN++I +L
Sbjct: 349 YENIEERENGGTPQIIGIIRAALAFWVKEYIGYQEIEKQEHRYIERALKRLLPNRSISIL 408
Query: 405 GNTSVKRQAILSFLVYSTTNSSPENMKIE-----------------------RNKPLHGP 441
G+TS KRQAILSF++YS+TN+S N + R KPLHGP
Sbjct: 409 GSTSTKRQAILSFIIYSSTNNSLPNCITDMLGNPNSREKVKKLYMWEETGSMRAKPLHGP 468
Query: 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501
FVA L +DLFG+QARGGC+CAGPYGH LL D+ S R+AI KGY G+KPGWTR++FP
Sbjct: 469 FVAALLSDLFGVQARGGCSCAGPYGHKLLNIDEACSQAYRTAIAKGYEGIKPGWTRVSFP 528
Query: 502 YYMSNEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNP 561
YYMSNEEFEFIL ALEFIA YG RFLPLY FN++ G+W +K + DL+ KE
Sbjct: 529 YYMSNEEFEFILKALEFIADYGQRFLPLYAFNLRNGSWTLKEKELTDLLGKEN------- 581
Query: 562 LASAIQDLRISEKHRNRDTEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNIL 621
SA + N + + + K+ SYL++AK IA LLP+FP +R L EDI+ ++L
Sbjct: 582 -YSASHIFAFKNQWTNAEAKLAAIVYKHKSYLESAKRIANLLPKFPPERVLHEDIESSLL 640
Query: 622 YFRI 625
FRI
Sbjct: 641 TFRI 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519939|ref|XP_003630258.1| Cysteine desulfurase [Medicago truncatula] gi|355524280|gb|AET04734.1| Cysteine desulfurase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/656 (60%), Positives = 494/656 (75%), Gaps = 42/656 (6%)
Query: 1 MEIKQLIFRDTTSAPTKGHSNSKTRSESTSSTRQTCSEFKNDH----HP----------- 45
MEI+Q + + P S +K ++ S +T ++ + H HP
Sbjct: 1 MEIEQPLLAEII--PILAQSQNKAKNGDYVSLTKTNNKLETSHDFCYHPESFKKLVEMDL 58
Query: 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY 105
P ++ EEKL WLRSQIIGN +FD FG+R+L YADHTASGRSLRY ED+IIN++LPFY
Sbjct: 59 PCNESVEEKLCWLRSQIIGNYAKFDSPFGRRKLVYADHTASGRSLRYNEDFIINHLLPFY 118
Query: 106 GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165
GNTHT DSYVG R TKM+HEA+ YIK+CLGGG+ DAIIFCG+GTTA+IKRLQEVM I VP
Sbjct: 119 GNTHTCDSYVGSRTTKMLHEATEYIKKCLGGGEDDAIIFCGSGTTASIKRLQEVMVIAVP 178
Query: 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL 225
SI+R+ ++ SL EERWVVF+GP+EHHSNLLSWRQSLAEVVEIGLDD GLLD+EAL+ QL
Sbjct: 179 SILRESMLNSLSKEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDKGLLDMEALKLQL 238
Query: 226 ELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRN 285
E YK RP+LGSFSACSNVTGIYSDT +IA L H+Y G+ACFDFAASGPYV+I++RS
Sbjct: 239 EAYKDTNRPLLGSFSACSNVTGIYSDTHAIAMLFHKYNGYACFDFAASGPYVEIDMRSGK 298
Query: 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345
DGYDA+FL+ HKFLGGP +PG+LL++KALY+L SSPPSTCGGGTV YVNAFDEKDT+Y+
Sbjct: 299 NDGYDAVFLSPHKFLGGPDSPGVLLMNKALYRLRSSPPSTCGGGTVTYVNAFDEKDTIYM 358
Query: 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405
E+IE+RENGGTP I+Q +RA+LAFWVKEYIGY I+K+E +YI AL R++ N NI++LG
Sbjct: 359 ENIEDRENGGTPPIIQTVRASLAFWVKEYIGYNEIEKREQLYINKALKRLVTNPNIKILG 418
Query: 406 NTSVKRQAILSFLVYSTTNSSP----------------ENMKIERNKPLHGPFVATLFND 449
N + KRQAILSFL+YSTTNS + M +R KPLHGPFVA L ND
Sbjct: 419 NLNAKRQAILSFLIYSTTNSCSSIDSSSQEHEGELNLWQEMGNQRGKPLHGPFVAALLND 478
Query: 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509
LFGIQARGGCACAGPYGH LL ++++SL IRSA+Q+GY+GVKPGWTR++FPYYMS +F
Sbjct: 479 LFGIQARGGCACAGPYGHELLNINKSQSLAIRSAVQEGYIGVKPGWTRVSFPYYMSESDF 538
Query: 510 EFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNPLASAIQDL 569
++IL+A+EF+A YG RF PLY FN++ G+W + + + ++T N N+ L ++++
Sbjct: 539 DYILSAIEFLAVYGQRFFPLYSFNLRNGSWTMKTEKFEAVNKEDTCNISNHLLGKNLEEI 598
Query: 570 RISEKHRNRDTEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNILYFRI 625
N D + + N+ +YLD AK IA LP+FP Q L E++DPNILYFR+
Sbjct: 599 -------NTDVDVAVRRNQ--TYLDVAKYIASSLPKFPPQGILQEEMDPNILYFRV 645
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519937|ref|XP_003630257.1| hypothetical protein MTR_8g093550 [Medicago truncatula] gi|355524279|gb|AET04733.1| hypothetical protein MTR_8g093550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/586 (64%), Positives = 464/586 (79%), Gaps = 15/586 (2%)
Query: 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY 105
P ++ EEKL WLRSQIIGNDVEF+ FG R+L Y+DHTASGRSL +IE++I ++LPFY
Sbjct: 59 PCNESVEEKLCWLRSQIIGNDVEFNSPFGTRKLVYSDHTASGRSLHFIENFITKHLLPFY 118
Query: 106 GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165
GNTHT +SYVG R TKMVHEA+ YIK+CLGGG+ DA++ CG+G TAAIKRLQEVMGI VP
Sbjct: 119 GNTHTCESYVGNRTTKMVHEATKYIKKCLGGGEDDALMLCGSGATAAIKRLQEVMGIVVP 178
Query: 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL 225
SI+R++++ L +EERWVVF+GPYEHHSN+LSWRQSLAEVVEIGLDD GLLD+EAL+ QL
Sbjct: 179 SILRERMLRCLSEEERWVVFVGPYEHHSNILSWRQSLAEVVEIGLDDQGLLDMEALKLQL 238
Query: 226 ELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRN 285
E YK RP+LGSFSACSNVTGIYSDTR+IARL+HQY GFACFDFAASGPYV+I++RS
Sbjct: 239 EAYKDTNRPLLGSFSACSNVTGIYSDTRAIARLIHQYKGFACFDFAASGPYVEIDMRSGK 298
Query: 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345
IDGYDA+F++ HKFLGGP +PGILL++K LY L SPPSTCGGGTVNYVN F+EKDTLYL
Sbjct: 299 IDGYDAVFISPHKFLGGPDSPGILLMNKTLYMLRFSPPSTCGGGTVNYVNGFNEKDTLYL 358
Query: 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405
EDIEERENGGTP I+Q +RAALAFWVKEYI YE I ++E +YI AL + +PN NI++LG
Sbjct: 359 EDIEERENGGTPPIIQTVRAALAFWVKEYINYEEIDRREQLYINKALKKFIPNPNIEILG 418
Query: 406 NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465
N S KRQAILSF++YST N S K +R K ++G FVATL NDLFGIQ+RGGCACAGPY
Sbjct: 419 NISTKRQAILSFVIYSTINRSERKTKNKRGKIINGSFVATLLNDLFGIQSRGGCACAGPY 478
Query: 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525
GH LL ++++SL +RSAIQ+GY+GVKPGWTR++FPYYM EEFEFIL ++EF++ YG R
Sbjct: 479 GHDLLNINESQSLAVRSAIQEGYVGVKPGWTRVSFPYYMDEEEFEFILTSIEFVSIYGQR 538
Query: 526 FLPLYHFNVKAGNWCSSQKAIKDLID------KETNNNINNPLASAIQDLRISEKHRNRD 579
FLPLY+FN+K GNW ++ ++ L+ KET NN + A + + R +
Sbjct: 539 FLPLYNFNLKNGNWRIKKQKLETLMKENNCYFKETKEKTNNDFSKADGEYNV----RIKS 594
Query: 580 TEHLKKINKYASYLDNAKTIAGLLPEFPCQRSLSEDIDPNILYFRI 625
L++ + A AK IA LP+FP Q D+DPN+L+F +
Sbjct: 595 VGKLRRKSFVA-----AKCIASRLPKFPSQSIAYPDVDPNVLHFIV 635
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130554|ref|XP_002328318.1| predicted protein [Populus trichocarpa] gi|222838033|gb|EEE76398.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/487 (76%), Positives = 425/487 (87%), Gaps = 1/487 (0%)
Query: 53 EKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD 112
+KLAWLRSQIIG+DVEFD FGKRRLTYADHTASGRSLRYIE++IINNVLPFYGNTHTSD
Sbjct: 1 KKLAWLRSQIIGDDVEFDSPFGKRRLTYADHTASGRSLRYIENFIINNVLPFYGNTHTSD 60
Query: 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKL 172
SYVG + TKM+HEA+ YIK+CLGGGQ DA++FCG+GTTAAIKRLQEVM I VPS +RD+L
Sbjct: 61 SYVGHKTTKMLHEAAEYIKKCLGGGQDDAVMFCGSGTTAAIKRLQEVMAIAVPSTLRDRL 120
Query: 173 ITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232
I L +EERW+VF+GPYEHHSNLLSWRQSLAEV+EIGLDDNGL+DIE LR +LE YK A
Sbjct: 121 IKCLSNEERWLVFVGPYEHHSNLLSWRQSLAEVIEIGLDDNGLIDIEDLRQRLESYKHAN 180
Query: 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAI 292
RP+LGSFSACSNVTGI+SDTR IA+LLHQ+GGFACFDFAASGPYVKI++RS IDGYDAI
Sbjct: 181 RPILGSFSACSNVTGIFSDTRGIAQLLHQHGGFACFDFAASGPYVKIDMRSGEIDGYDAI 240
Query: 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352
FL+ HKFLGGPG+PGILL+SKALYQLGSS PSTCGGGTV++VN F EK TLYL +IEERE
Sbjct: 241 FLSPHKFLGGPGSPGILLMSKALYQLGSSAPSTCGGGTVDFVNGFCEKHTLYLNEIEERE 300
Query: 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQ 412
NGGTPQI+Q IRAALAFWVKEYI Y VI++QE++YI AL R+LPN+NI VLGNTS KRQ
Sbjct: 301 NGGTPQIIQTIRAALAFWVKEYISYRVIEEQENMYIAKALDRLLPNKNIWVLGNTSAKRQ 360
Query: 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472
AIL + E + +R+KPLHGPFVA L NDLFGIQARGGCACAGPYGH+LL
Sbjct: 361 AILKNINDEVLYMWGE-VGNKRDKPLHGPFVAALLNDLFGIQARGGCACAGPYGHSLLHV 419
Query: 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHF 532
++ SL RSAI KGY+GVKPGWTR++FPYYMS+EEFEFILAA+EF A YG RFLPLYHF
Sbjct: 420 NEPGSLAFRSAINKGYVGVKPGWTRVSFPYYMSSEEFEFILAAIEFTAIYGQRFLPLYHF 479
Query: 533 NVKAGNW 539
N K G+W
Sbjct: 480 NWKTGSW 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 625 | ||||||
| UNIPROTKB|Q5LNM5 | 471 | SPO3178 "Uncharacterized prote | 0.361 | 0.479 | 0.409 | 3.7e-66 | |
| TIGR_CMR|SPO_3178 | 471 | SPO_3178 "conserved hypothetic | 0.361 | 0.479 | 0.409 | 3.7e-66 | |
| DICTYBASE|DDB_G0290035 | 1165 | DDB_G0290035 [Dictyostelium di | 0.772 | 0.414 | 0.334 | 7.1e-64 | |
| TIGR_CMR|CJE_0882 | 422 | CJE_0882 "aminotransferase, pu | 0.555 | 0.822 | 0.333 | 1.4e-46 | |
| WB|WBGene00022195 | 957 | Y71H2B.5 [Caenorhabditis elega | 0.561 | 0.366 | 0.312 | 1.5e-40 | |
| TIGR_CMR|BA_5215 | 406 | BA_5215 "cysteine desulfurase | 0.491 | 0.756 | 0.208 | 2.8e-08 | |
| UNIPROTKB|P63516 | 417 | csd "Probable cysteine desulfu | 0.422 | 0.633 | 0.234 | 4.7e-07 | |
| TIGR_CMR|CBU_1357 | 405 | CBU_1357 "selenocysteine lyase | 0.350 | 0.540 | 0.261 | 2e-06 | |
| TIGR_CMR|SPO_2014 | 406 | SPO_2014 "cysteine desulfurase | 0.308 | 0.475 | 0.231 | 1.3e-05 | |
| UNIPROTKB|Q9EXP2 | 412 | sufS "Cysteine desulfurase" [D | 0.494 | 0.75 | 0.223 | 0.00012 |
| UNIPROTKB|Q5LNM5 SPO3178 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 99/242 (40%), Positives = 138/242 (57%)
Query: 58 LRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQ 117
L +IG + G L YAD+ ASGR+LR +E Y+ VLPFY N+HT SY G
Sbjct: 19 LADGLIGEKIMIPGLNGDVPLVYADYVASGRALRQVEQYVSEYVLPFYANSHTEASYCGA 78
Query: 118 RMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR 177
+T + A I R +G + DA+IF G+G TA + RL ++GI +
Sbjct: 79 YITGLRRAARAEIARLVGAAEDDAVIFAGSGATAGLNRLVSLLGIAQAA----------- 127
Query: 178 DEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237
R VVF+GPYEHHSN+L WR+S A+VVEI G D+ L++ L + A M+G
Sbjct: 128 ---RPVVFIGPYEHHSNILPWRESGAKVVEIPEAPEGGPDLVVLQTALRAH-AGSDLMIG 183
Query: 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH 297
+FSA SNVTGI +DT + RLL +G + +D+A GPY+ I++ + DAI ++ H
Sbjct: 184 AFSAASNVTGIITDTVPVTRLLKAHGALSIWDYAGGGPYLPIDMGEGGLRK-DAIVVSPH 242
Query: 298 KF 299
KF
Sbjct: 243 KF 244
|
|
| TIGR_CMR|SPO_3178 SPO_3178 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 3.7e-66, Sum P(2) = 3.7e-66
Identities = 99/242 (40%), Positives = 138/242 (57%)
Query: 58 LRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQ 117
L +IG + G L YAD+ ASGR+LR +E Y+ VLPFY N+HT SY G
Sbjct: 19 LADGLIGEKIMIPGLNGDVPLVYADYVASGRALRQVEQYVSEYVLPFYANSHTEASYCGA 78
Query: 118 RMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR 177
+T + A I R +G + DA+IF G+G TA + RL ++GI +
Sbjct: 79 YITGLRRAARAEIARLVGAAEDDAVIFAGSGATAGLNRLVSLLGIAQAA----------- 127
Query: 178 DEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237
R VVF+GPYEHHSN+L WR+S A+VVEI G D+ L++ L + A M+G
Sbjct: 128 ---RPVVFIGPYEHHSNILPWRESGAKVVEIPEAPEGGPDLVVLQTALRAH-AGSDLMIG 183
Query: 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH 297
+FSA SNVTGI +DT + RLL +G + +D+A GPY+ I++ + DAI ++ H
Sbjct: 184 AFSAASNVTGIITDTVPVTRLLKAHGALSIWDYAGGGPYLPIDMGEGGLRK-DAIVVSPH 242
Query: 298 KF 299
KF
Sbjct: 243 KF 244
|
|
| DICTYBASE|DDB_G0290035 DDB_G0290035 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 7.1e-64, Sum P(2) = 7.1e-64
Identities = 175/523 (33%), Positives = 260/523 (49%)
Query: 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKR-CL 134
R +TY D TASGRSL IE+Y++N V+P Y NTHT G + T EA +KR C
Sbjct: 96 RLITYCDFTASGRSLESIEEYLLNEVIPLYANTHTLSDATGLQTTLFRREAREIVKRGCR 155
Query: 135 GGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194
G D+++F G+G+TAAI L ++ I K ++S+ + ++ LGPYEHHSN
Sbjct: 156 GSNVDDSLLFIGSGSTAAINALIHILDI--------KYLSSINKKP--LILLGPYEHHSN 205
Query: 195 LLSWRQSLAEVVEIGLDDN------GLLDIEALRSQLELYKA--AKRPMLGSFSACSNVT 246
+L WR++ AEV+ ++N G +D+ L L+ Y +KR ++GSFSA SNV+
Sbjct: 206 ILPWREAGAEVLTCPENNNSKEGIRGGVDLNFLEEILKKYSKLDSKRLIIGSFSAASNVS 265
Query: 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY--DAIFLATHKFXXXXX 304
GI DT + +L +YG + +D+A + PY+ I++ N + Y D IF + HKF
Sbjct: 266 GIIEDTIKVTEILKRYGALSIWDYACAAPYIPIDMNPFNDNRYKKDVIFFSPHKFLGGVS 325
Query: 305 XXXXXXXSKALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR 364
K L L V YV + T YL + EE+E GTP IV IR
Sbjct: 326 TPGVMLIKKKL--LNNNIPHRPGGGSVLYVTS---NQTTYLSNFEEKEEAGTPDIVGSIR 380
Query: 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN 424
L F ++E+IG + I + E + ++ +N+ +LG+ S+ + F
Sbjct: 381 CGLVFQLREHIGIDNIYQSEIEHSNHLRLKLNKIKNLVLLGDNSINQ-----FEQQQPQQ 435
Query: 425 SSPENMKIER--NKP---LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLE 479
P + R N P LH FVA+L NDLFGIQ+R CACAGPY LL +Q +
Sbjct: 436 QLPIISFLIRYENDPTLFLHHNFVASLLNDLFGIQSRASCACAGPYLQCLLGLNQEDNQN 495
Query: 480 IRSAIQKGYLGVKPGWTRITFPYYMSNXXXXXXXXXXXXXXXYGHRFLPLYHFNVKAGNW 539
+ +I + ++PG RI + + G +F+PLY F V +G W
Sbjct: 496 LLESIFEKQEIIRPGMVRINVSFTHTLQEIDFIIKAIEFICLNGWKFMPLYTFVVASGEW 555
Query: 540 CSSQKAIKDLIDKETNNNI---NNPLASAIQDLRISEKHRNRD 579
K K L D+ ++I NN ++ ++ K + D
Sbjct: 556 KHRSKLNK-LPDRRWLSSITYNNNNGSNGNGKMKYQSKRKQID 597
|
|
| TIGR_CMR|CJE_0882 CJE_0882 "aminotransferase, putative" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 122/366 (33%), Positives = 200/366 (54%)
Query: 75 KRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHE-ASNYIKRC 133
K+ + + D TAS +L+ +E I + +LP Y NTH SDS + T+ ++E A IK+
Sbjct: 13 KKGILHFDFTASALALKCVEKEI-SKILPTYANTH-SDSSLNSFKTQQIYEQARKDIKKS 70
Query: 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS 193
L + A+I CG G+++AIK+ QE++GI +P +++++ T + +V +GPYEHHS
Sbjct: 71 LSLDENFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHS 130
Query: 194 NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTR 253
N LS+R+ L E + I LD NG +D + L L+ K KR ++ SFS SNVTGI SD +
Sbjct: 131 NELSFREGLCECIRIPLDKNGEIDFDFLEKTLQ--KNKKRKIIASFSLASNVTGILSDYK 188
Query: 254 SIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFXXXXXXXXXXXXSK 313
I+ ++ ++ G FD ++ PY I+ + YDA+F+++HK K
Sbjct: 189 RISEMVRKFKGIVAFDASSFIPYKNISCQY-----YDALFISSHKLIGGIGGSGLLAIKK 243
Query: 314 ALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE 373
L V YV+ + YL + E E GGTP I+Q+IRA+LAF +K+
Sbjct: 244 ---DLCGNKPSFAAGGTVGYVSRTSQ---CYLCNEEALEEGGTPGILQLIRASLAFKIKD 297
Query: 374 YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE 433
IG + I+K+E++ + ++ N+ +L ++K + L ++ SP ++ E
Sbjct: 298 SIGIKNIEKKEEILKDYFFEKLKTIPNL-ILYAKNLKTR--LPIFAFNIKGISPFDIAYE 354
Query: 434 RNKPLH 439
+K H
Sbjct: 355 LSKKYH 360
|
|
| WB|WBGene00022195 Y71H2B.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.5e-40, P = 1.5e-40
Identities = 121/387 (31%), Positives = 185/387 (47%)
Query: 172 LITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQL-ELYKA 230
L++ +D+E +V EHHSNLL WR+ E I +NG +D+ L++ L E+ ++
Sbjct: 141 LMSDGKDDEEVIVVHSSQEHHSNLLPWRKIAKECRNIEELENGQIDLVHLQNVLKEIRES 200
Query: 231 -AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289
++G+F A SN+TGI D +++ ++L + A +DFA++ PY+ I +
Sbjct: 201 HGSIKIIGTFCAASNLTGILIDIQNVTKILKMFDAIAIWDFASAAPYIPILVNGTY--PL 258
Query: 290 DAIFLATHKFXXXXXXXXXXXXSKALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIE 349
DA+F + HKF K++ Q V +VN+ DE YL+++E
Sbjct: 259 DAVFFSGHKFPGGVSSPGVLIVKKSIIQ--ATKPKRIGGGTVFFVNSTDE---WYLKEVE 313
Query: 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV 409
RE GGT V +R A+A +K IG + IK E L +I +N+ +LG + V
Sbjct: 314 HREEGGTADAVGAVRLAMAVKMKRSIGEDTIKNLESSISHLVLQKIRTIENLVLLGPSVV 373
Query: 410 K-RQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468
R + SFL+ P++ H +++ L NDLFGIQ R GC CAGPY
Sbjct: 374 DHRLPVFSFLI-----RDPQSQLF-----FHHNYISVLLNDLFGIQTRAGCMCAGPYSQK 423
Query: 469 LLAFDQTRSLEIRSAIQKG------YLG----------VKPGWTRITFPYYMSNXXXXXX 512
LL D+ S SAIQ+ +L ++PG+TRI+FPY+
Sbjct: 424 LLGIDEELSQRFVSAIQESPDLDRTHLRRQAEYSQQEFLRPGFTRISFPYFFKMAEVDEI 483
Query: 513 XXXXXXXXXYGHRFLPLYHFNVKAGNW 539
+ FL LY N + G W
Sbjct: 484 LEAIRFIAKHAADFLHLYQVNCETGEW 510
|
|
| TIGR_CMR|BA_5215 BA_5215 "cysteine desulfurase SufS" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 71/340 (20%), Positives = 132/340 (38%)
Query: 70 DYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNY 129
D ++L Y D A+ + + + + + N H +G + T A
Sbjct: 14 DQKVNGKQLVYFDSAATSQKPIQVIETLERYYKEYNSNVHRGVHTLGTKATDAYEGAREK 73
Query: 130 IKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPY 189
+++ + + IIF GTT A+ + G+ ++++ + V+
Sbjct: 74 VRKFINAKSMEEIIFT-CGTTTALNTVAASYGLE-----------NVKEGDEIVISY--M 119
Query: 190 EHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245
EHHSN++ W+Q A + + L +G + IE R + + S SNV
Sbjct: 120 EHHSNIIPWQQVAKKTGATLKYLPLQPDGTISIEDARQTI-----TPNTKIVSIMYVSNV 174
Query: 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFXXXXXX 305
G + + I + H+ G D A S P++K++++ N D Y L+ HK
Sbjct: 175 LGTINPVKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYA---LSAHKMCGPTGI 231
Query: 306 XXXXXXSKALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA 365
+ L + +++V D +++ + E + + GTP I I
Sbjct: 232 GVLYGKKELLNNMEPIEFGGEM---IDFV---DLQESTWKE-LPWKFEAGTPIIGNAIGL 284
Query: 366 ALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405
A E IG + I+K E + AL R+ + + G
Sbjct: 285 GAAIDFLEEIGLDNIEKHEHELAQYALERLSEVDGVTIYG 324
|
|
| UNIPROTKB|P63516 csd "Probable cysteine desulfurase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 68/290 (23%), Positives = 119/290 (41%)
Query: 137 GQADAIIFCGAGTTAAI--KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194
G+AD +F GA T + K E + + V ++ D V+ EHH+N
Sbjct: 78 GRADIALFVGADTDELVFTKNATEALNL-VSYVLGDSRFERAVGPGD-VIVTTELEHHAN 135
Query: 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS 250
L+ W R++ A + G+ D+G +D+++L L+ R + +F+ SNVTG+ +
Sbjct: 136 LIPWQELARRTGATLRWYGVTDDGRIDLDSL--YLD-----DRVKVVAFTHHSNVTGVLT 188
Query: 251 DTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFXXXXXXXXXXX 310
+ HQ G D S P+ ++L +D A F + HK
Sbjct: 189 PVSELVSRAHQSGALTVLDACQSVPHQPVDLHELGVDF--AAF-SGHKMLGPNGIGVLYG 245
Query: 311 XSKALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW 370
+ L Q+ V A Y +R GTP Q++ A A
Sbjct: 246 RRELLAQMPPFLTGGSMIETVTMEGA------TYAP-APQRFEAGTPMTSQVVGLAAAAR 298
Query: 371 VKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVK-RQAILSFLV 419
IG ++ E + +A+ + +++LG TS++ R + ++F+V
Sbjct: 299 YLGAIGMAAVEAHERELVAAAIEGLSGIDGVRILGPTSMRDRGSPVAFVV 348
|
|
| TIGR_CMR|CBU_1357 CBU_1357 "selenocysteine lyase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 141 (54.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 63/241 (26%), Positives = 105/241 (43%)
Query: 184 VFLGPYEHHSNLLSWRQSLAEVVE-----IGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238
+ + EHHSN++ W Q L E V I +DDNG+LDI+A + L KR L
Sbjct: 115 ILISAMEHHSNIVPW-QLLCERVNAKLKVIPVDDNGVLDIDAYQRLL-----TKRTKLVG 168
Query: 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHK 298
SNV G + + + +L HQ D A + + +++++ + D Y +F ++HK
Sbjct: 169 LIHISNVLGTVNPVKDMIQLAHQNKTPVLLDGAQAISHREVDVQDLDCDFY--VF-SSHK 225
Query: 299 FXXXXXXXXXXXXSKALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIEERENGGTPQ 358
+K L + V++ EK T Y + + GTP
Sbjct: 226 LYGPTGVGVLYGKAKWLETMPPYQGGGDMISRVSF-----EK-TDY-NVVPYKFEAGTPN 278
Query: 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFL 418
+ +I A IG+E IK E+ + A ++ ++++GN K AI SF+
Sbjct: 279 MGGVIGMGAAIDYVTRIGFEKIKLHENELMCYAAEQLQKIPGLRIIGNAPDKASAI-SFV 337
Query: 419 V 419
+
Sbjct: 338 M 338
|
|
| TIGR_CMR|SPO_2014 SPO_2014 "cysteine desulfurase SufS" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 50/216 (23%), Positives = 87/216 (40%)
Query: 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137
LTY D+ AS + + + D + Y N H ++ T+ + R L G
Sbjct: 23 LTYLDNGASAQKPQAVIDAVTRGYAEEYANVHRGLHFLSNLATEKYEAVRGIVARFLNAG 82
Query: 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197
D I+ +GTT I + G +P + DE + L EHH+N++
Sbjct: 83 SEDEIVL-NSGTTEGINMV--AYGWAMPQMQAG-------DE----IVLSTMEHHANIVP 128
Query: 198 W---RQSLAEVVE-IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTR 253
W R+ V++ + + +G LD +A+ + R L + + CSNV G D +
Sbjct: 129 WHFLRERQGVVLKWVDPEPDGSLDPQAVLDAI-----GPRTKLVAITHCSNVLGTVVDVK 183
Query: 254 SIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289
SI G D + ++ ++++ D Y
Sbjct: 184 SICAGARAKGVPVLVDGSQGAVHMPVDVQDLGCDFY 219
|
|
| UNIPROTKB|Q9EXP2 sufS "Cysteine desulfurase" [Dickeya dadantii 3937 (taxid:198628)] | Back alignment and assigned GO terms |
|---|
Score = 125 (49.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 77/345 (22%), Positives = 128/345 (37%)
Query: 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137
L Y D AS + + D + L Y H + R T + E + +
Sbjct: 29 LAYLDSAASAQKPLAVIDRERDFYLHEYAAVHRGIHTLSARATSAMEEVRAKVATFIHAA 88
Query: 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197
A+ I+F GTT AI + G T D L+ S EHH+N++
Sbjct: 89 SAEDIVFV-RGTTEAINLVANSYGRTAFQ-PGDNLVIS------------EMEHHANIVP 134
Query: 198 WRQSLAEVVEIGL-----DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT 252
W Q LA+ + L D+G LD+ L + L+ +R L + + SNV G +
Sbjct: 135 W-QMLAQARGLTLRVLPITDDGELDMAQLPALLD-----ERTRLVAVTQVSNVLGTVNPL 188
Query: 253 RSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFXXXXXXXXXXXXS 312
I R H G D A + + +++++ + D Y + HK S
Sbjct: 189 AEIIRQAHACGAKVLVDGAQAVMHQAVDVQALDCDFYA---FSGHKLYGPSGIGVLYGKS 245
Query: 313 KALYQLXXXXXXXXXXXXVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372
+ L + V+ T Y D R G+P + +I A
Sbjct: 246 ELLQAMPPWEGGGAMIREVSLTQG-----TTYA-DPPWRFEAGSPHVAGIIGLGAALDYV 299
Query: 373 EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSF 417
+G + I+ E + + AL + +++ G V RQ +++F
Sbjct: 300 SALGVDAIQAHEGLLMRYALASLAEVPTLRLYG--PVHRQGVIAF 342
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 625 | |||
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 4e-71 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 6e-35 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 2e-30 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 1e-27 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 5e-13 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 3e-12 | |
| PRK09295 | 406 | PRK09295, PRK09295, bifunctional cysteine desulfur | 5e-12 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 1e-10 | |
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 2e-09 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 2e-08 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-06 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 3e-06 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 5e-06 | |
| PRK04366 | 481 | PRK04366, PRK04366, glycine dehydrogenase subunit | 3e-05 | |
| COG3844 | 407 | COG3844, COG3844, Kynureninase [Amino acid transpo | 2e-04 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 3e-04 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 4e-04 | |
| COG1003 | 496 | COG1003, GcvP, Glycine cleavage system protein P ( | 0.001 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 4e-71
Identities = 117/452 (25%), Positives = 186/452 (41%), Gaps = 70/452 (15%)
Query: 74 GKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133
+ L Y D+ A+ + + + D + + N H + + T + A + R
Sbjct: 19 VGKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARF 78
Query: 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS 193
L +D I+F GTT A+ + +G ++ DE + + EHHS
Sbjct: 79 LNADSSDEIVF-TRGTTEALNLVARGLGRSLK----------PGDE----IVVSDLEHHS 123
Query: 194 NLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249
N++ W++ A+V I LDD+GLLD++AL + + L + S SNVTG
Sbjct: 124 NIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT-----PKTKLVALSHVSNVTGTV 178
Query: 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309
+ + IA L H++G D A + ++ I+++ G D + + HK+L GP G+L
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQE---LGCDFLAFSGHKWLLGPTGIGVL 235
Query: 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369
+ K L L P GGG + YV + + L ++ R GTP I I A A
Sbjct: 236 YVRKEL--LEELEPFLGGGGMIEYV---SRDEGVTLAELPLRFEAGTPNIAGAIGLAAAL 290
Query: 370 WVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPEN 429
IG E I+ E E L + +++ G R I+SF V
Sbjct: 291 DYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNV---------- 340
Query: 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYL 489
K +H VATL ++ GI R G CA P R L + + I
Sbjct: 341 ------KGIHPHDVATLLDEK-GIAVRAGHHCAQPL---------HRLLGVDATI----- 379
Query: 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521
R + Y + E+ + +L AL+ A
Sbjct: 380 -------RASLHLYNTEEDVDRLLEALKKALA 404
|
Length = 405 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 6e-35
Identities = 109/380 (28%), Positives = 163/380 (42%), Gaps = 60/380 (15%)
Query: 104 FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163
+ GN H ++G+ T+ EA + + + IIF +GTT AI
Sbjct: 26 YNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEEIIFT-SGTTEAIN--------L 76
Query: 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIE 219
V + L DE + + EHH+NL+ W +++ A V I +D NGLLD++
Sbjct: 77 VAISLGRSLKP--GDE----ILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLD 130
Query: 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279
AL L R L + + SNVTG + I +L H+YG D A + + I
Sbjct: 131 ALEKLL-----TPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPI 185
Query: 280 NLRSRNIDGYDAIFLA--THKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAF 337
++++ +D FLA HK G G G+L + L L PP GGG ++ V
Sbjct: 186 DVQALGVD-----FLAFSGHKLYGPTGI-GVLYGRRDL--LEKLPPLLGGGGMIDTV--- 234
Query: 338 DEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395
++T + D + GTP I +I AAL ++ E IG E I+K E R+
Sbjct: 235 SLQETTF-ADAPSKFEAGTPNIAGIIGLGAALD-YLAE-IGLEAIEKHERELAAYLYERL 291
Query: 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA 455
L I++ G + +R +I+SF +H VATL ++ GI
Sbjct: 292 LAIPGIRLYGPPAERRPSIISFNF----------------PGVHPHDVATLLDE-RGIAV 334
Query: 456 RGGCACAGPYGHTLLAFDQT 475
R G CA P L T
Sbjct: 335 RSGHHCAQPL-MVRLGLGGT 353
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 117/429 (27%), Positives = 175/429 (40%), Gaps = 99/429 (23%)
Query: 105 YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI--------KRL 156
N H + R T A + R + D IIF TT AI +
Sbjct: 27 NANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIF-TRNTTEAINLVAYGLGRAN 85
Query: 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-----VVEIGLD 211
+ G D+++TS EHHSN++ W+Q LAE + + +D
Sbjct: 86 KP--G--------DEIVTS------------VMEHHSNIVPWQQ-LAERTGAKLKVVPVD 122
Query: 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271
D+G LD+EAL L +R L + + SNV G + + I + H+ G D A
Sbjct: 123 DDGQLDLEALEKLL-----TERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGA 177
Query: 272 ASGPYVKINLRSRNIDGYDAIFLAT--HKFLGGPGTPGILLISKALYQLGSSPPSTCGGG 329
S ++ ++++ D FLA HK LG G G+L + L L PP GG
Sbjct: 178 QSAGHMPVDVQDLGCD-----FLAFSGHKMLGPTGI-GVLYGKEEL--LEEMPPYGGGGE 229
Query: 330 TVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVY 387
+ V +F+E T Y D+ + GTP I I AA+ ++++ IG E I E
Sbjct: 230 MIEEV-SFEE--TTY-ADLPHKFEAGTPNIAGAIGLGAAID-YLEK-IGMEAIAAHEHEL 283
Query: 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447
AL R+ ++V G+ R ++SF + + +H VAT+
Sbjct: 284 TAYALERLSEIPGVRVYGDAE-DRAGVVSFNL----------------EGIHPHDVATIL 326
Query: 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507
D +GI R G CA P L+ LGV PG R +F Y + E
Sbjct: 327 -DQYGIAVRAGHHCAQP----LMRR----------------LGV-PGTVRASFGLYNTEE 364
Query: 508 EFEFILAAL 516
E + ++ AL
Sbjct: 365 EIDALVEAL 373
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 100/422 (23%), Positives = 166/422 (39%), Gaps = 80/422 (18%)
Query: 105 YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164
N H + R T+ + + + + I+F GTT +I + G +
Sbjct: 46 NANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTR-GTTESINLVAYSWGDS- 103
Query: 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEA 220
+ + + EHH+N++ W ++ A + I LDD+G LD++
Sbjct: 104 ------------NLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDD 151
Query: 221 LRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN 280
L L ++ L + + SNV G + IA+L HQ G D A + P++ ++
Sbjct: 152 LEKLLT-----EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD 206
Query: 281 LRSRNIDGYDAIFLA--THKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFD 338
+++ + D F HK G G G+L + L L PP GG + V
Sbjct: 207 VQALDCD-----FYVFSGHKMYGPTGI-GVLYGKEEL--LEQMPPFLGGGEMIAEV---S 255
Query: 339 EKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396
++T Y E + GTP I +I AA+ +++ IG E I+ E AL R+
Sbjct: 256 FEETTYNE-APHKFEAGTPNIAGVIGLGAAID-YLEA-IGLENIEAHEHELTAYALERLG 312
Query: 397 PNQNIQVLG-NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA 455
+++ G + R I+SF V + +H V T+ D GI
Sbjct: 313 EIPGLRIYGPRDAEDRGGIISFNV----------------EGVHPHDVGTIL-DEEGIAV 355
Query: 456 RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515
R G CA P L+ GV P R +F Y + E+ + ++ A
Sbjct: 356 RSGHHCAQP----LMR----------------RFGV-PATCRASFYIYNTEEDIDALVEA 394
Query: 516 LE 517
L+
Sbjct: 395 LK 396
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 5e-13
Identities = 80/288 (27%), Positives = 121/288 (42%), Gaps = 40/288 (13%)
Query: 97 IINNVLPFY----GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152
+I+ FY G H S Q +T A + R L A+ I++ GTT +
Sbjct: 32 VIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWT-RGTTES 90
Query: 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEI 208
I + S R +L DE + + EHH+NL+ W +Q+ A+VV++
Sbjct: 91 IN-------LVAQSYARPRLQPG--DE----IIVSEAEHHANLIPWLMVAQQTGAKVVKL 137
Query: 209 GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268
+ + L DI L L R + + SNVTG D L HQYG
Sbjct: 138 PIGADLLPDIRQLPELL-----TPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVV 192
Query: 269 DFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGG 328
D A + ++++ +ID Y + HK L GP G+L L L + PP GG
Sbjct: 193 DGAQGVVHGPPDVQALDIDFYA---FSGHK-LYGPTGIGVLYGKTEL--LEAMPPWQGGG 246
Query: 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEY 374
+++V +FD + + R GTP I +I AAL W+ +
Sbjct: 247 KMLSHV-SFDGFIP---QAVPHRFEAGTPNIAGVIGLSAALE-WLTDI 289
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 77/284 (27%), Positives = 115/284 (40%), Gaps = 39/284 (13%)
Query: 97 IINNVLPFY----GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152
+I FY GN H S QR+T A + + L A I++ GTT +
Sbjct: 35 VIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWT-RGTTES 93
Query: 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEI 208
I + S R +L DE + + EHH+NL+ W +Q+ A+VV++
Sbjct: 94 IN-------LVAQSYARPRL--QPGDE----IIVSEAEHHANLVPWLMVAQQTGAKVVKL 140
Query: 209 GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268
L + L D++ L + R + + SNVTG D L HQ G
Sbjct: 141 PLGADRLPDVDLLPELIT-----PRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMV 195
Query: 269 DFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGG 328
D A + ++++ +ID Y F HK L GP G+L L L + P GG
Sbjct: 196 DGAQGAVHFPADVQALDIDFY--AFSG-HK-LYGPTGIGVLYGKSEL--LEAMSPWQGGG 249
Query: 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFW 370
+ V+ FD + R GTP + +I AAL +
Sbjct: 250 KMLTEVS-FDGFTP---QSAPWRFEAGTPNVAGVIGLSAALEWL 289
|
Length = 401 |
| >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 100/425 (23%), Positives = 169/425 (39%), Gaps = 84/425 (19%)
Query: 109 HTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168
HT + ++M + +A+ +I A+ ++F GTT I + G S +
Sbjct: 59 HTLSAQATEKMENVRKQAALFI----NARSAEELVFV-RGTTEGINLVANSWG---NSNV 110
Query: 169 R--DKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDDNGLLDIEALR 222
R D +I S EHH+N++ W+ + AE+ I L+ +G L +E L
Sbjct: 111 RAGDNIIIS------------EMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLP 158
Query: 223 SQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR 282
+ + +R L + + SNV G + + L HQ+G D A + + ++++
Sbjct: 159 ALFD-----ERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQ 213
Query: 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342
+ + D Y +F + HK L GP GIL + +AL Q PP GG + V+ + T
Sbjct: 214 ALDCDFY--VF-SGHK-LYGPTGIGILYVKEALLQ--EMPPWEGGGSMIATVSL--TEGT 265
Query: 343 LYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402
+ R GTP +I A +G I + E + AL ++ ++
Sbjct: 266 TW-AKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLT 324
Query: 403 VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462
+ G R +++F N H + F D +GI R G CA
Sbjct: 325 LYGPQ--NRLGVIAF-----------------NLGKHHAYDVGSFLDNYGIAVRTGHHCA 365
Query: 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522
P L+A+ P R + Y ++EE + ++A L+ I
Sbjct: 366 MP----LMAYYNV-----------------PAMCRASLAMYNTHEEVDRLVAGLQRI--- 401
Query: 523 GHRFL 527
HR L
Sbjct: 402 -HRLL 405
|
Length = 406 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 95/438 (21%), Positives = 156/438 (35%), Gaps = 88/438 (20%)
Query: 95 DYIINNVLPFYGNTHTSDSYVGQRM----TKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150
D + + FY N S R+ ++ V E + + + ++F TT
Sbjct: 14 DEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATT 73
Query: 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL 210
A L+ ++ +E V P EH+S + + L E + + +
Sbjct: 74 ALNIALKGLL------------------KEGDHVITTPMEHNS-VARPLECLKEQIGVEI 114
Query: 211 -----DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGF 265
D+ GL+ E ++ ++ L S SNVTG I L + G F
Sbjct: 115 TIVKCDNEGLISPERIKRAIK-----TNTKLIVVSHASNVTGTILPIEEIGELAQENGIF 169
Query: 266 ACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPST 325
D A + + I++ I D + HK L GP G L I + + P +
Sbjct: 170 FILDAAQTAGVIPIDMTELAI---DMLAFTGHKGLLGPQGTGGLYIRE---GIKLKPLKS 223
Query: 326 CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF--WVKEYIGYEVIKKQ 383
GGT ++ D+ L +R GT I A ++++ IG I K+
Sbjct: 224 --GGTGSHSALIDQPSEL-----PDRFESGTLNT-PGIAGLNAGIKFIEK-IGIANIAKK 274
Query: 384 EDVYIESALGRILPNQNIQVLG-NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442
E + E L + +++ G R ++SF V E + E
Sbjct: 275 ECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTV--------EGIDSEE-------- 318
Query: 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKP-GWTRITFP 501
VA + ++ F I R G CA P H +G G R++
Sbjct: 319 VADILDEKFDIATRTGLHCA-PLAHK-------------------TIGTFATGTIRLSLG 358
Query: 502 YYMSNEEFEFILAALEFI 519
Y+ + EE E +L AL I
Sbjct: 359 YFNTEEEIEKLLEALSEI 376
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 78/295 (26%), Positives = 123/295 (41%), Gaps = 52/295 (17%)
Query: 184 VFLGPYEHHSNLLSWRQSLAE-----VVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238
V L EHHSN++ W Q +A+ + +GL + +LD+E L+ L +++ L +
Sbjct: 125 VILSVAEHHSNIVPW-QLVAQKTGAVLKFVGLTPDEVLDVEQLKELL-----SEKTKLVA 178
Query: 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHK 298
SNV G I H G D S P++ +++++ G D + ++HK
Sbjct: 179 THHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL---GADFLVASSHK 235
Query: 299 FLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358
G G G L L L S PP GG ++ V F + T Y R GTP
Sbjct: 236 MCGPTGI-GFLWGKSDL--LESMPPFLGGGEMISDV--FLDHST-YAPP-PSRFEAGTPA 288
Query: 359 IVQMIR-AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-----NIQVLG---NTSV 409
I + I A ++ E IG + I + E +E LG L + +++ G + V
Sbjct: 289 IGEAIGLGAAIDYLSE-IGMDRIHEYE---VE--LGTYLYEKLSSVPGVRIYGPKPSEGV 342
Query: 410 KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464
R A+ +F V E +H ++T + G+ R G CA P
Sbjct: 343 GRAALCAFNV--------EG--------IHPTDLSTFLDQQHGVAIRSGHHCAQP 381
|
Length = 424 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 97/448 (21%), Positives = 147/448 (32%), Gaps = 111/448 (24%)
Query: 104 FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGT---TAAIKRLQEVM 160
+GN + S+ G+ K V EA I + LG + IIF T AIK
Sbjct: 28 VFGNPSSLHSF-GREARKAVEEAREQIAKLLGA-DPEEIIFTSGATESNNLAIK------ 79
Query: 161 GITVPSIMRDK---LITSLRDEERWVVFLGPYEHHS--NLLSWRQSL-AEVVEIGLDDNG 214
G + K +ITS EH + N + + EV + +D NG
Sbjct: 80 GAALAYRNAQKGKHIITS------------AIEHPAVLNTCRYLERQGFEVTYLPVDSNG 127
Query: 215 LLDIEALRSQLELYKAAKRP--MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272
L+D+E L + A RP +L S +N TG I + + G D
Sbjct: 128 LVDLEQL-------EEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQ 180
Query: 273 SGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVN 332
+ + I+L + D + + HKF GGP G L + + P GGG
Sbjct: 181 AVGKIPIDLEELGV---DLLSFSAHKF-GGPKGIGALYVRPGV----RLEPLIHGGG--- 229
Query: 333 YVNAFDEKDTLYLEDIEEREN-GGT---PQIVQM---IRAALAFWVKEYIGYEVIKKQED 385
+ER GT P IV A+ +E ++
Sbjct: 230 ----------------QERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRD--- 270
Query: 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445
+E L I+P ++ + G P + + G +
Sbjct: 271 -RLEDGLLEIIP--DVYLNG---------------DDEPRLPNILNF-SFPGVEGESLLL 311
Query: 446 LFNDLFGIQARGGCACAGPYG---HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502
DL GI G AC+ H L A + L +I R +
Sbjct: 312 AL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEEL-AHGSI------------RFSLGR 357
Query: 503 YMSNEEFEFILAALEFIAAYGHRFLPLY 530
+ + EE + AL+ I PL+
Sbjct: 358 FTTEEEIDAAAEALKEIIKRLRELSPLW 385
|
Length = 386 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 4/138 (2%)
Query: 172 LITSLRDEERWVVFLGPYEHHSNLLSWRQSL-AEVVEIGLDDNGLLDIEALRSQLELYKA 230
+ +L V+ H S + A+ V + +DD G ++ LE KA
Sbjct: 33 ALLALLGPGDEVIVDA-NGHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVA--ILEELKA 89
Query: 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYD 290
L + + G+ + I ++ +YG D A++G G D
Sbjct: 90 KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGAD 149
Query: 291 AIFLATHKFLGGPGTPGI 308
+ + HK LGG G +
Sbjct: 150 VVTFSLHKNLGGEGGGVV 167
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 45/245 (18%)
Query: 80 YADHTASGRSLRYIEDYIINNVLPF----YGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135
Y D+ A+ R ++ ++ +LP+ +GN + S+ G + K V EA + + LG
Sbjct: 2 YLDNNATTR----VDPEVLEAMLPYFTEYFGNPSSMHSF-GGEVGKAVEEAREQVAKLLG 56
Query: 136 GGQADAIIFCGAGT---TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192
+ D IIF GT AIK P + +IT+ EH
Sbjct: 57 A-EPDEIIFTSGGTESDNTAIKSALAAQ----PE--KRHIITT------------AVEHP 97
Query: 193 S--NLLSWRQSLA-EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249
+ +L + +V + +D+ G LD+E LR+ + L S +N TG
Sbjct: 98 AVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAI-----TDDTALVSVMWANNETGTI 152
Query: 250 SDTRSIARLLHQYGG-FACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGI 308
I + + G F A G + I+L+ NI D + L+ HK G G G
Sbjct: 153 FPIEEIGEIAKERGALFHTDAVQAVG-KIPIDLKEMNI---DMLSLSGHKLHGPKGV-GA 207
Query: 309 LLISK 313
L I K
Sbjct: 208 LYIRK 212
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 28/254 (11%)
Query: 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139
Y DH A+ + + ++ +L +GN + G K V A + L G
Sbjct: 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL-GADT 59
Query: 140 DAIIFCGAGTTA---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH-HSNL 195
+ +IF T + AI L + +ITS E V L P N
Sbjct: 60 EEVIFTSGATESNNLAILGLARAG----EQKGKKHIITS-AIEHPAV--LEPIRALERN- 111
Query: 196 LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSI 255
+ + V D++G +D++ L + +L S +N TG R I
Sbjct: 112 -GFTVTYLPV-----DESGRIDVDELADAIR-----PDTLLVSIMHVNNETGSIQPIREI 160
Query: 256 ARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315
A +L + F D A + ++L + I D I + HK GP G L+I K
Sbjct: 161 AEVLEAHEAFFHVDAAQVVGKITVDLSADRI---DLISCSGHKI-YGPKGIGALVIRKRG 216
Query: 316 YQLGSSPPSTCGGG 329
P GGG
Sbjct: 217 KPKAPLKPIMFGGG 230
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-05
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 27/115 (23%)
Query: 204 EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-SDTRSIARLLHQY 262
+VVEI +++GL+D+EAL++ + AA ML N G++ + IA ++H+
Sbjct: 184 KVVEIPSNEDGLVDLEALKAAVGEDTAAL--ML----TNPNTLGLFERNILEIAEIVHEA 237
Query: 263 GGFACFDFAASGPYVKINL-----RSRNID-GYDAIFLATHK-FL-----GGPGT 305
GG +D A NL ++R D G+D + L HK F GGPG+
Sbjct: 238 GGLLYYDGA--------NLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGS 284
|
Length = 481 |
| >gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL-GGPG 304
TG D R+I L HQ+G +D A S V ++L + D AI ++K+L GGPG
Sbjct: 179 TGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADF--AIG-CSYKYLNGGPG 235
Query: 305 TPGILLISKAL 315
P L ++
Sbjct: 236 APAGLFVAPRH 246
|
Length = 407 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 57/229 (24%), Positives = 78/229 (34%), Gaps = 56/229 (24%)
Query: 175 SLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--------DNGLLDIEALRSQLE 226
DE V + +H +N+ W Q AE G G L + L S L
Sbjct: 102 GPGDE----VIVTRLDHEANISPWLQ-AAERA--GAKVKWARVDEATGELHPDDLASLL- 153
Query: 227 LYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNI 286
+ R L + +A SN G D +I L+H G D P+ I++++
Sbjct: 154 ----SPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQAT-- 207
Query: 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTC-----GG------GTVNY-- 333
G D + + +KF G GIL L L + PP G GT Y
Sbjct: 208 -GADFLTCSAYKFFGPH--MGILWGRPEL--LMNLPPYKLTFSYDTGPERFELGTPQYEL 262
Query: 334 ----VNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYE 378
V A D YL + E NG R L + YE
Sbjct: 263 LAGVVAAVD-----YLAGLGESANGSR-------RERLVASFQAIDAYE 299
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 51/253 (20%), Positives = 88/253 (34%), Gaps = 50/253 (19%)
Query: 119 MTKMVHEASNYIKRCLGGGQADAI-IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR 177
T+M E N++ + G DA +F G + + ++ + RD+ L+
Sbjct: 36 ATEMEAEVVNWLAKLFGLPSEDADGVFTS-GGSESN-----LLALLA---ARDRARKRLK 86
Query: 178 DEERW----VVFLGPYEHHSNLLSWRQSLA----EVVEIGLDDNGLLDIEALRSQLELYK 229
+V + + H S ++ A +V + +D++G +D EAL + ++ K
Sbjct: 87 AGGGRGIDKLVIVCSDQAHV---SVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDK 143
Query: 230 AA-KRPMLGSFSACSNVTGIYSDTRSIARLLHQY----------GGFACFDFAASGPYVK 278
A P++ +A + TG IA L +Y GGF F
Sbjct: 144 AEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLP-FPEPRHLDF 202
Query: 279 INLRSRNIDGYDAIFLATHKFLGGPGTPGILL--ISKALYQLGSSPPSTCGGGTVNYVNA 336
I+ D+I + HK+ P +L K L G Y
Sbjct: 203 ------GIERVDSISVDPHKYGLVPLGCSAVLVRALKLWATLRRF-------GRDGYGEH 249
Query: 337 FDE--KDTLYLED 347
D YL +
Sbjct: 250 IDRIVDLAKYLAE 262
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 27/114 (23%)
Query: 204 EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS-DTRSIARLLHQY 262
+VV + D+NG +D++ LR++ E AA M+ + S G++ D R I ++H+
Sbjct: 180 KVVVVKCDENGNVDLDDLRAKAEDNLAAL--MITNPSTL----GVFEEDIREICEIVHEA 233
Query: 263 GGFACFDFAASGPYVKINL-----RSRNID-GYDAIFLATHKFL------GGPG 304
GG +D A NL +R D G+D + L HK GGPG
Sbjct: 234 GGQVYYDGA--------NLNAIVGLARPGDMGFDVVHLNLHKTFCIPHGGGGPG 279
|
Length = 496 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.98 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.97 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.97 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.97 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.97 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.97 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.97 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.97 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.97 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.97 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.97 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.97 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.97 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.97 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.97 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.96 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.96 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.95 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.95 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.95 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.95 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.95 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.95 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.94 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.94 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.94 | |
| PLN02263 | 470 | serine decarboxylase | 99.94 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.94 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.94 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.94 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.94 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.94 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.93 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.93 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.93 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.93 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.93 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.93 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.93 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.93 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.93 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.93 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.92 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.92 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.92 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.92 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.92 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.92 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.92 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.92 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.92 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.92 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.92 | |
| PRK07324 | 373 | transaminase; Validated | 99.92 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.92 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.91 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.91 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.91 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.91 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.91 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.91 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.91 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.91 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.91 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.91 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.91 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.91 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.91 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.91 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.91 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.91 | |
| PLN02187 | 462 | rooty/superroot1 | 99.91 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.9 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.9 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.9 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.9 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.9 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.9 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.9 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.9 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.9 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.9 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.9 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.9 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.9 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.9 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.9 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.9 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.9 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.9 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.9 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.9 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.9 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.9 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.89 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.89 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.89 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.89 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.89 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.89 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.89 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.89 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.89 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.89 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.89 | |
| PLN02656 | 409 | tyrosine transaminase | 99.89 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.89 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.88 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.88 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.88 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.88 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.88 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.88 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.87 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.87 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.87 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.87 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.87 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.87 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.87 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.87 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.87 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.86 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.86 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.86 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.86 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.86 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.86 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.86 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.86 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.86 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.86 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.85 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PLN02231 | 534 | alanine transaminase | 99.85 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.85 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.85 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.85 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.85 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.85 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.85 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.85 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.85 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.85 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.84 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.84 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.84 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.84 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.84 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.84 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.84 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.84 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.84 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.84 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.84 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.83 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.83 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.83 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.83 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.83 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.83 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.83 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.83 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.83 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.83 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.82 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.82 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.82 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.82 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.82 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.82 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.81 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.81 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.81 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.8 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.8 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.8 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.8 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.8 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.8 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.79 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.79 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.79 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.79 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.79 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.78 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.78 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.78 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.78 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.78 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.78 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.76 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.76 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.75 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.75 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.75 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.74 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.74 | |
| PLN02368 | 407 | alanine transaminase | 99.73 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.73 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.73 | |
| PLN02397 | 423 | aspartate transaminase | 99.73 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.73 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.73 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.72 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.71 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.7 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.7 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.7 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.69 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.69 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.68 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.67 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.67 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.66 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.65 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.65 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.64 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.64 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 99.64 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.64 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.64 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.63 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.63 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.63 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.63 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.62 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.62 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.61 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.61 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.61 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.61 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.61 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.61 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.6 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.6 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.59 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.59 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.59 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.58 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.58 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.56 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.56 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.56 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.56 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.56 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.56 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.56 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.55 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.55 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.54 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.54 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.54 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.54 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.54 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.53 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.53 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.52 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.52 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.51 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.51 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.51 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.5 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.5 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.5 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.49 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.48 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.48 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.48 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.47 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.47 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.46 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.46 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.46 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.46 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.46 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.45 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.45 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.45 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.43 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.43 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.43 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.42 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.41 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.41 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.4 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.38 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.38 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.38 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.37 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.36 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.31 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.31 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.3 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.29 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.22 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.19 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.17 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.17 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.15 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.12 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.09 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.08 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.03 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.01 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.99 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.89 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.32 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.27 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.19 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 98.12 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.74 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.51 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 96.96 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 95.79 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 95.73 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 94.9 |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=487.43 Aligned_cols=394 Identities=31% Similarity=0.481 Sum_probs=349.6
Q ss_pred HHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 043646 55 LAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL 134 (625)
Q Consensus 55 ~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~ 134 (625)
+..+|++|+.....+ + ++++|||++++++.|..|++++.+++..+++|+|.+.+..+...++.++++|+.+|+++
T Consensus 5 ~~~~r~~fp~l~~~~----~-~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~ 79 (405)
T COG0520 5 VAAVRADFPALKREV----G-KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFL 79 (405)
T ss_pred hHHHHhhCHHHhhcc----C-CCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHh
Confidence 455888888764333 2 56899999999999999999999999999999998888888899999999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEec
Q 043646 135 GGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIGL 210 (625)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~ 210 (625)
|+++.++|+|| .|+|.+|+.++.+++.. +++||+ ||+++.+|+|+..+|+. .|++++++|+
T Consensus 80 ~a~~~~eIvft-~~tT~aln~va~~l~~~------------~~~gde--Iv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~ 144 (405)
T COG0520 80 NADSSDEIVFT-RGTTEALNLVARGLGRS------------LKPGDE--IVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144 (405)
T ss_pred CCCCCCeEEEe-CChhHHHHHHHHHhhhh------------hcCCCE--EEEccCcchhhHHHHHHHHHhcCcEEEEEec
Confidence 99964489999 89999999999988521 468885 99999999999999975 4899999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCc
Q 043646 211 DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYD 290 (625)
Q Consensus 211 ~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D 290 (625)
+++|.++++++++.++ ++||+|++++++|.||.+.|+++|+++||++|++++||+||++|+.++|++++ ++|
T Consensus 145 ~~~g~~~~~~~~~~i~-----~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l---~~D 216 (405)
T COG0520 145 DDDGLLDLDALEKLIT-----PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCD 216 (405)
T ss_pred CCCCCcCHHHHHHhcC-----CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhc---CCC
Confidence 9999999999999887 79999999999999999999999999999999999999999999999999998 999
Q ss_pred EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHH
Q 043646 291 AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALA 368 (625)
Q Consensus 291 ~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~ 368 (625)
|+++|+|||++||.|+|+|++++++ ++.+.|...||+++.++... ....+.+...+|+.|||++.+.++ ++++
T Consensus 217 f~afsgHKwl~gP~GiGvLy~r~~~--l~~l~P~~~gg~~~~~~~~~---~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~ 291 (405)
T COG0520 217 FLAFSGHKWLLGPTGIGVLYVRKEL--LEELEPFLGGGGMIEYVSRD---EGVTLAELPLRFEAGTPNIAGAIGLAAALD 291 (405)
T ss_pred EEEEcccccccCCCceEEEEEchHH--HhhcCCcccCCCceeeeccc---ccccccCcchhhccCCchHHHHHhHHHHHH
Confidence 9999999999999999999999999 77889999999998877531 244556668999999999999886 5555
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
+. +.+|++.|.+|++.+++++.+.|+++|+++++++.+..+.++++|.+.. +++.+++..|.
T Consensus 292 ~~--~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~----------------~~~~dv~~~L~ 353 (405)
T COG0520 292 YL--LEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKG----------------IHPHDVATLLD 353 (405)
T ss_pred HH--HHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCC----------------CCHHHHHHHHH
Confidence 55 7889999999999999999999999999999998655799999999954 46889999996
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+ .||.+|.|++|+.|+ +..+++. +.+|+|+++|||++|||+|+++|+++..
T Consensus 354 ~-~gI~vr~g~~ca~p~-~~~~~~~--------------------~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 354 E-KGIAVRAGHHCAQPL-HRLLGVD--------------------ATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred h-CCeEEEeccccccHH-HHhcCCC--------------------CceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 5 689999999999887 5556643 5699999999999999999999998754
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=478.01 Aligned_cols=450 Identities=19% Similarity=0.219 Sum_probs=352.1
Q ss_pred HHHHHHH-HhhcCCCccccCCCCCCceEeccCCCCCcchH-HHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 043646 53 EKLAWLR-SQIIGNDVEFDYSFGKRRLTYADHTASGRSLR-YIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYI 130 (625)
Q Consensus 53 ~~~~~lr-~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~-~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 130 (625)
..++.+| .+|+.. ...+||||++++++++ .|.+++..++...++|||+ .+..+..+.+.++++|+.+
T Consensus 19 ~~~~~~R~~~fp~l----------~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~i 87 (805)
T PLN02724 19 KPIDELRATEFARL----------KGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQV 87 (805)
T ss_pred hhHHHHHHHHhhhc----------CCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHH
Confidence 4588899 478776 4589999999998664 6666666666778899996 4556777889999999999
Q ss_pred HHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH---HcCCeEE
Q 043646 131 KRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR---QSLAEVV 206 (625)
Q Consensus 131 a~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv 206 (625)
++++|+++++ +|+|| +|+|++++.++..+. +++||+ |+++..+|+++...++ ..|++++
T Consensus 88 a~~lga~~~~~~VvFt-snaT~alnlva~~l~--------------~~~gd~--Iv~t~~eH~svl~~~~~a~~~G~~v~ 150 (805)
T PLN02724 88 LEYFNAPPSDYACVFT-SGATAALKLVGETFP--------------WSSESH--FCYTLENHNSVLGIREYALEKGAAAI 150 (805)
T ss_pred HHHhCCCccceEEEEe-CChHHHHHHHHHHCC--------------CCCCCe--EEEeeccccchHHHHHHHHHcCCeEE
Confidence 9999998765 68999 789999999988773 567885 8889999999874432 2499999
Q ss_pred EEecC--------CCCCCCH--HHHHHHHHH-----hhhCCCCeEEEEecccCccccccCHHHHHHHHHHc--------C
Q 043646 207 EIGLD--------DNGLLDI--EALRSQLEL-----YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY--------G 263 (625)
Q Consensus 207 ~v~~~--------~~~~ld~--~~L~~~l~~-----~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~--------g 263 (625)
.++++ ..+.+++ ++|++.++. ....+++++|++++++|.||.+.|+++|..+++.. +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 99886 3344544 567665420 00124678999999999999999999876555532 3
Q ss_pred CEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 264 GFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 264 ~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
+++++|+||++|+.++|+..+ ++|++++|+|||+|+|.|+|+|++++++ +..+.|.++||+++.+... ......
T Consensus 231 ~~v~vDaaQ~~g~~piDv~~~---~~Dfl~~S~HK~~GgP~G~G~L~vr~~~--~~~l~p~~~GGg~~~~~~~-~~~~~~ 304 (805)
T PLN02724 231 WMVLLDAAKGCGTSPPDLSRY---PADFVVVSFYKIFGYPTGLGALLVRRDA--AKLLKKKYFGGGTVAASIA-DIDFVK 304 (805)
T ss_pred eEEEeehhhhcCCCCCChhhc---CCCEEEEecceeccCCCCceEEEEehhh--hhhhcCCccCCCceEEEec-ccceee
Confidence 689999999999999999988 8999999999999999999999999988 5567888999887654321 001112
Q ss_pred cccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC------cEEEeCCCC-----CC
Q 043646 344 YLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ------NIQVLGNTS-----VK 410 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~------gv~v~~~~~-----~~ 410 (625)
.....+.+|+.||+++.+++. ++++++ ..+|++.|.+|+..|++++++.|.+++ +++++++.. ..
T Consensus 305 ~~~~~~~rfE~GT~n~~~i~~l~aal~~l--~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~ 382 (805)
T PLN02724 305 RRERVEQRFEDGTISFLSIAALRHGFKLL--NRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHI 382 (805)
T ss_pred ccccHHHHhcCCCcchhHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCccc
Confidence 234457899999999998864 555555 678999999999999999999999886 699998641 35
Q ss_pred CcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCC-
Q 043646 411 RQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYL- 489 (625)
Q Consensus 411 ~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~- 489 (625)
++++++|++.... +..+++.++..++ +.+||.+|+||+|+.++++.++++.+.+ +.+.+.+|+.
T Consensus 383 r~~ivsFnv~~~~-----------~~~v~~~~v~~l~-~~~gI~vR~G~~Ca~~~~~~~lg~~~~~---l~~~~~~~~~c 447 (805)
T PLN02724 383 QGPIVTFNLKRAD-----------GSWVGHREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHKD---LQANFEAGHVC 447 (805)
T ss_pred ccCEEEEEEEcCC-----------CCEeCHHHHHHHH-HhcCcEEeeccccCchHHHHHcCCCHHH---HHHHhhcCCcc
Confidence 8999999997532 3346666777655 6789999999999988887777776542 3334555543
Q ss_pred --------CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh----------------------------hhcccCcccc
Q 043646 490 --------GVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG----------------------------HRFLPLYHFN 533 (625)
Q Consensus 490 --------g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~----------------------------~~~~~~y~~~ 533 (625)
+...|++|+|+++|+|.+|||+|+++|++.+-.. .+...||.||
T Consensus 448 ~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~iYP 527 (805)
T PLN02724 448 WDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVSTPKKRGNVTLRSKRTIPLPVLERKESFDSHRLKSITVYP 527 (805)
T ss_pred CchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcCCCCCCcccccCcccccCCCccccccCCCCEEEEEEEec
Confidence 4445999999999999999999999999976222 1234578999
Q ss_pred cccc------cccccccchhhhhhhhcc
Q 043646 534 VKAG------NWCSSQKAIKDLIDKETN 555 (625)
Q Consensus 534 ~~~~------~w~~~~~~~~~~~~~~~~ 555 (625)
+||| +|.+.+.||++| |+||
T Consensus 528 VKS~~g~~v~~a~~~~~Gl~~D--R~~~ 553 (805)
T PLN02724 528 IKSCAGFSVERWPLSETGLLYD--REWM 553 (805)
T ss_pred cccCCCceeeEEEEeccccccc--ceEE
Confidence 9999 899999999999 9997
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-50 Score=409.23 Aligned_cols=377 Identities=22% Similarity=0.293 Sum_probs=320.4
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+||||++++|..+.|++++...+...|+||++ .|.+|+...+.++++|+.|++++|+++. +|+|| ||.|++.+.++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~-eIiFT-SG~TEsnNlaI 78 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE-EIIFT-SGATESNNLAI 78 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-cCCcHHHHHHH
Confidence 589999999999999999999999999999999 5778999999999999999999999996 89999 56666555554
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc---CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS---LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~---G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
...-...+ -++..+ +|+++..+|+++...++.+ |.+|.++|++.+|.+|+++|+++|+ ++|
T Consensus 79 ~g~~~a~~----------~~~~~~-HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~-----~~T 142 (386)
T COG1104 79 KGAALAYR----------NAQKGK-HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR-----PDT 142 (386)
T ss_pred HhhHHhhh----------cccCCC-eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC-----CCc
Confidence 43111100 011222 6999999999999988766 9999999999999999999999999 689
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
.+|++.++||.||++.|+++|+++|+++|+++|+|++|++|.+++|+..+ ++|++++|.||+. ||.|+|+||+++.
T Consensus 143 ~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~---~vD~ls~SaHK~~-GpkGiGaLyv~~~ 218 (386)
T COG1104 143 ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEEL---GVDLLSFSAHKFG-GPKGIGALYVRPG 218 (386)
T ss_pred eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceecccccc---CcceEEeehhhcc-CCCceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999987 8999999999985 5999999999776
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
. .+.|...|||+ +..++.||.|+.+++..+.++.+ ....++....+...+++++.+.
T Consensus 219 ~----~~~p~i~GGgQ------------------E~g~RsGTenv~~Ivg~~~A~~~-a~~~~~~~~~~~~~lr~~l~~~ 275 (386)
T COG1104 219 V----RLEPLIHGGGQ------------------ERGLRSGTENVPGIVGFGKAAEI-AVEELEEENARLRKLRDRLEDG 275 (386)
T ss_pred C----ccCceeccCcC------------------CCCCCCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 6 57899999998 77889999999988754433321 1233566778888999999999
Q ss_pred hCCC-CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch---hhHhhh
Q 043646 395 ILPN-QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP---YGHTLL 470 (625)
Q Consensus 395 L~~l-~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~---~~~~~l 470 (625)
|.+. |.+.+.+.. ..|+|++..+.+++. .++.+...| ++.||.+.+|++|..+ ..|.+.
T Consensus 276 l~~~~p~~~~~g~~-~~rlP~~~~~~f~gv---------------~gE~ll~~L-~~~gI~vStGSACsS~~~~pShVL~ 338 (386)
T COG1104 276 LLEIIPDVYLNGDD-EPRLPNILNFSFPGV---------------EGESLLLAL-DLAGIAVSTGSACSSGSLEPSHVLR 338 (386)
T ss_pred HHhcCCcEEEcCCc-ccCCCCeEEEEeCCC---------------cHHHHHHhc-cccCeEEeccccccCCCCCccHHHH
Confidence 9865 899988875 678998888887753 455666666 6789999999999976 788888
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCc
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLY 530 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y 530 (625)
.++.++..+ .+.+|||++.++|++|++++++++++++....+..|++
T Consensus 339 AmG~~~e~a-------------~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~~~ 385 (386)
T COG1104 339 AMGISEELA-------------HGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELSPLW 385 (386)
T ss_pred HcCCChHHh-------------CccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 887766554 69999999999999999999999999999988877765
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=400.88 Aligned_cols=393 Identities=24% Similarity=0.343 Sum_probs=315.4
Q ss_pred HHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 043646 55 LAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL 134 (625)
Q Consensus 55 ~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~ 134 (625)
++.+|++|+.... .+.+ .+.+|||++++++.|+.|++++.+++...+.|++.+.+..+....+.++++|+.+++++
T Consensus 5 ~~~~r~~fp~~~~---~~~~-~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 80 (406)
T PRK09295 5 VEKVRADFPVLSR---EVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI 80 (406)
T ss_pred hHHHHhhCccccC---cCCC-CceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 4678999987521 0112 35799999999999999999999999877788876556667778899999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEec
Q 043646 135 GGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGL 210 (625)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~ 210 (625)
|+.++++|+|| +|++++++.++.++... .+++||+ |+++..+|+++...|. ..|++++.+++
T Consensus 81 ~~~~~~~v~~t-~g~t~~l~~~~~~~~~~-----------~~~~gd~--vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 146 (406)
T PRK09295 81 NARSAEELVFV-RGTTEGINLVANSWGNS-----------NVRAGDN--IIISEMEHHANIVPWQMLCARVGAELRVIPL 146 (406)
T ss_pred CcCCCCeEEEe-CCHHHHHHHHHHHhhhh-----------cCCCcCE--EEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence 98433489998 78999999988765211 1467885 9999999999876654 46999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCc
Q 043646 211 DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYD 290 (625)
Q Consensus 211 ~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D 290 (625)
+.++.+|+++|+++++ +++++|++++++|+||.+.|+++|+++||++|+++++|++|+.|+.++++..+ ++|
T Consensus 147 ~~~~~~d~~~l~~~i~-----~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~D 218 (406)
T PRK09295 147 NPDGTLQLETLPALFD-----ERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQAL---DCD 218 (406)
T ss_pred CCCCCCCHHHHHHhcC-----CCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhc---CCC
Confidence 8888899999999987 58999999999999999999999999999999999999999999999999876 899
Q ss_pred EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHH
Q 043646 291 AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALA 368 (625)
Q Consensus 291 ~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~ 368 (625)
++++|+||++| |.|+|++++++++ ++.++|...||+.+..... .....+.....+++.||+++.++++ ++++
T Consensus 219 ~~~~s~~K~~g-p~G~G~l~~~~~~--~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 292 (406)
T PRK09295 219 FYVFSGHKLYG-PTGIGILYVKEAL--LQEMPPWEGGGSMIATVSL---TEGTTWAKAPWRFEAGTPNTGGIIGLGAALD 292 (406)
T ss_pred EEEeehhhccC-CCCcEEEEEchHh--HhhCCCcccCCceeeeeec---CCccccCCchhhcCCCCccHHHHHHHHHHHH
Confidence 99999999665 8899999999987 4556665544444333211 0111123345789999999988765 4455
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
++ ...|++.+.++.+.+++++++.|.++++++++++. .+.++++|.+.. .++.++.+.|
T Consensus 293 ~~--~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~--~~~~iv~~~~~~----------------~~~~~~~~~L- 351 (406)
T PRK09295 293 YV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNLGK----------------HHAYDVGSFL- 351 (406)
T ss_pred HH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC--CCceEEEEEECC----------------cCHHHHHHHH-
Confidence 55 56799999999999999999999999999999873 467899998642 2356788877
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+++||.++.|++|+.+.... ++ .++++|+|+++|+|++|||+++++|+++..
T Consensus 352 ~~~gI~v~~g~~c~~~~~~~-~~--------------------~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 352 DNYGIAVRTGHHCAMPLMAY-YN--------------------VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HhCCeEEeccccchHHHHHH-HC--------------------CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999998543221 11 247899999999999999999999998754
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=395.19 Aligned_cols=397 Identities=25% Similarity=0.353 Sum_probs=317.9
Q ss_pred HHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC
Q 043646 56 AWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135 (625)
Q Consensus 56 ~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g 135 (625)
+.+|++|+..+ ..+.| +..+|||+++.++.|+.|.+++.+++..+..|++...+..+....+.++++|+.+++++|
T Consensus 15 ~~~r~~fp~~~---~~~~~-~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~ 90 (424)
T PLN02855 15 AETRPDFPILD---QTVNG-SKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN 90 (424)
T ss_pred HHHHHhCchhc---cccCC-CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC
Confidence 55789997652 11223 358999999999999999999999888777787765444556667788999999999999
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecC
Q 043646 136 GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLD 211 (625)
Q Consensus 136 ~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~ 211 (625)
++++++|+|| +|+|++++.++..+++. .+++|++ |+++..+|+++...|+ ..|++++.++++
T Consensus 91 ~~~~~~v~~t-~g~t~al~~i~~~~~~~-----------~~~~gd~--vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~ 156 (424)
T PLN02855 91 ASTSREIVFT-RNATEAINLVAYTWGLA-----------NLKPGDE--VILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT 156 (424)
T ss_pred CCCCCEEEEe-CCHHHHHHHHHHHhhhh-----------cCCCcCE--EEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence 9654489998 78899999988765311 1467885 9999999999876664 459999999998
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcE
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDA 291 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~ 291 (625)
.++.+|+++++++++ +++++|++++++|+||.+.|+++|+++||++|+++++|++|+.|..++++..+ ++|+
T Consensus 157 ~~~~~~~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~---~~d~ 228 (424)
T PLN02855 157 PDEVLDVEQLKELLS-----EKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL---GADF 228 (424)
T ss_pred CCCCcCHHHHHHHhc-----cCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhc---CCCE
Confidence 777899999999997 58999999999999999999999999999999999999999999999998876 8899
Q ss_pred EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHH
Q 043646 292 IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAF 369 (625)
Q Consensus 292 v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~ 369 (625)
+++|+||++ ||.|+|++++++++ ++.++|...||..+.... . +...+...+.+++.||+++.+++. +++++
T Consensus 229 ~~~s~~K~~-gp~G~G~l~~~~~~--~~~~~p~~~g~~~~~~~~--~--~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~ 301 (424)
T PLN02855 229 LVASSHKMC-GPTGIGFLWGKSDL--LESMPPFLGGGEMISDVF--L--DHSTYAPPPSRFEAGTPAIGEAIGLGAAIDY 301 (424)
T ss_pred EEeeccccc-CCCccEEEEEchhh--hhcCCCEecCCCceeeee--c--CccccCCChhhccCCChHHHHHHHHHHHHHH
Confidence 999999965 58899999999988 556777665554432211 0 111122335788999999988764 45555
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC---CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS---VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~---~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
+ ..+|++++.+|+..+++++++.|.++++++++++.+ ..+.++++|.+.. ++..++.+.
T Consensus 302 ~--~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~----------------~~~~~v~~~ 363 (424)
T PLN02855 302 L--SEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEG----------------IHPTDLSTF 363 (424)
T ss_pred H--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECC----------------cCHHHHHHH
Confidence 5 567999999999999999999999999999998643 3567888887632 235689999
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
|.+++||.++.|++|+.+. +..+++ ++++|||+++|+|++|+++++++|++++....
T Consensus 364 L~~~~gI~v~~g~~c~~~~-~~~~g~--------------------~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 364 LDQQHGVAIRSGHHCAQPL-HRYLGV--------------------NASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred hcccCCEEEechhhhhHHH-HHHhCC--------------------CCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 8665699999999998443 333332 37899999999999999999999999887643
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=384.43 Aligned_cols=387 Identities=25% Similarity=0.320 Sum_probs=309.5
Q ss_pred HHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 043646 55 LAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL 134 (625)
Q Consensus 55 ~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~ 134 (625)
++.+|++|+... +..+|||++++++.|+.|.+++.+++....+|++...+..+....+.++++|+.+++++
T Consensus 3 ~~~~r~~fp~l~---------~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 73 (398)
T TIGR03392 3 PAQFRQQFPALQ---------DGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL 73 (398)
T ss_pred hhHHHHhCCccC---------CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 467899997541 35899999999999999999999988777788876555566677889999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEec
Q 043646 135 GGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGL 210 (625)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~ 210 (625)
|+++.++|+|| +|++++++.++.++... .+++||+ |+++..+|+++...| +..|++++.+++
T Consensus 74 g~~~~~~i~~t-~g~t~~l~~~~~~~~~~-----------~~~~gd~--Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 139 (398)
T TIGR03392 74 NAPDAENIVWT-RGTTESINLVAQSYARP-----------RLQPGDE--IIVSEAEHHANLIPWLMVAQQTGAKVVKLPI 139 (398)
T ss_pred CCCCCCeEEEe-CChHHHHHHHHHHhhhc-----------cCCCCCE--EEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence 99643489998 78899999998876210 1467885 999999999976554 456999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCc
Q 043646 211 DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYD 290 (625)
Q Consensus 211 ~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D 290 (625)
+.++.+|+++|+++++ ++|++|++++++|+||.+.|+++|+++||++|+++++|++|+.++.++++..+ ++|
T Consensus 140 ~~~~~~~~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~d 211 (398)
T TIGR03392 140 GADLLPDIRQLPELLT-----PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQAL---DID 211 (398)
T ss_pred CCCCCcCHHHHHHHhc-----cCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhc---CCC
Confidence 8888899999999997 58999999999999999999999999999999999999999999998888776 789
Q ss_pred EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHH
Q 043646 291 AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALA 368 (625)
Q Consensus 291 ~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~ 368 (625)
++++|+||++| |.|+|++++++++ ++.++|...|+....... + ..........+++.||+++.+++. ++++
T Consensus 212 ~~~~s~~K~~g-p~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~e~GT~~~~~~~a~~~al~ 284 (398)
T TIGR03392 212 FYAFSGHKLYG-PTGIGVLYGKTEL--LEAMPPWQGGGKMLSHVS-F---DGFIPQAVPHRFEAGTPNIAGVIGLSAALE 284 (398)
T ss_pred EEEEecccccC-CCceEEEEEcHHH--HhhCCCeecCCceEeecc-c---cccccCCChhhccCCCCCHHHHHHHHHHHH
Confidence 99999999765 8889999999887 455666543333322211 1 111122345788999999888764 5555
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
++ ...|.+.+.++...+++++++.|.++++++++++. ..++++|.+. + ++..++.+.|.
T Consensus 285 ~l--~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~---~~~i~~~~~~-~---------------~~~~~l~~~L~ 343 (398)
T TIGR03392 285 WL--TDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP---GSSLLAFDFA-G---------------VHHSDLAALLA 343 (398)
T ss_pred HH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC---CCcEEEEEeC-C---------------cCHHHHHHHHH
Confidence 55 56789999999999999999999999999988653 3578887653 2 24668888885
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++||.+++|++|+.+... .++ .++++|||+++|+|++|+++++++|++++..
T Consensus 344 -~~gI~v~~g~~~~~~~~~-~~g--------------------~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 344 -ESGIALRAGQHCAQPLMA-ALG--------------------VSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred -hCCEEEecCccchHHHHH-HhC--------------------CCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 579999999999844322 112 2489999999999999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=383.08 Aligned_cols=388 Identities=24% Similarity=0.311 Sum_probs=310.6
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
.++.+|++|+... ++.+|||+++.++.|+.|++++.+++...++|++...+..+..+.+.++++|+.++++
T Consensus 5 ~~~~~r~~fp~l~---------~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 75 (401)
T PRK10874 5 NPAQFRAQFPALQ---------DAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQL 75 (401)
T ss_pred CHHHHHHhCCCcC---------CceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3477899997551 4589999999999999999999999988888887765666778889999999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEe
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIG 209 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~ 209 (625)
+|+...++|+|| +|++++++.++.++... .+++||+ |++++.+|+++...| +..|++++.++
T Consensus 76 ~g~~~~~~i~~~-~~~t~~i~~~~~~~~~~-----------~~~~gd~--vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~ 141 (401)
T PRK10874 76 LNAPDAKNIVWT-RGTTESINLVAQSYARP-----------RLQPGDE--IIVSEAEHHANLVPWLMVAQQTGAKVVKLP 141 (401)
T ss_pred cCCCCCCEEEEE-CCHHHHHHHHHHHhhhc-----------cCCCcCE--EEECCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence 999433389998 78999999998876210 1468885 999999999976555 34699999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
++.++.+|+++++++++ ++|++|++++++|+||.+.|+++|+++||++|+++++|++|+.+..++++..+ ++
T Consensus 142 ~~~~~~~d~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~---~~ 213 (401)
T PRK10874 142 LGADRLPDVDLLPELIT-----PRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQAL---DI 213 (401)
T ss_pred cCCCCcCCHHHHHHhcC-----cCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhc---CC
Confidence 98888899999999997 68999999999999999999999999999999999999999999999888776 79
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal 367 (625)
|++++|+||++| |.|+|+++++++. ++.+.|...|+...... .|. .........+++.||+++.++++ +++
T Consensus 214 d~~~~s~~K~~g-p~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~e~Gt~~~~~~~al~~al 286 (401)
T PRK10874 214 DFYAFSGHKLYG-PTGIGVLYGKSEL--LEAMSPWQGGGKMLTEV-SFD---GFTPQSAPWRFEAGTPNVAGVIGLSAAL 286 (401)
T ss_pred CEEEEecccccC-CCccEEEEEchHH--HhcCCCeecCCcceEee-ccC---ccCCCCChhhccCCCcCHHHHHHHHHHH
Confidence 999999999765 8889999999988 55666654333322211 110 01112235788999999877754 555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+++ +..|.+.+.++...+++++.+.|+++|+++++.+. ..++++|.+. + ++..++.+.|
T Consensus 287 ~~l--~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~---~~~i~~~~~~-~---------------~~~~~~~~~L 345 (401)
T PRK10874 287 EWL--ADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ---DSSLLAFDFA-G---------------VHHSDLVTLL 345 (401)
T ss_pred HHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---CCcEEEEEEC-C---------------cCHHHHHHHH
Confidence 554 56789999999999999999999999999988653 3567777652 2 2456888888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ +||.+++|+.|+.+.... ++ ..+++|||+++|+|++||++++++|+++++.
T Consensus 346 ~~-~gI~v~~g~~~~~~~~~~-~g--------------------~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 346 AE-YGIALRAGQHCAQPLLAA-LG--------------------VTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred HH-CCcEEeccccchHHHHHH-hC--------------------CCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 54 799999999997443221 12 2489999999999999999999999998764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=375.92 Aligned_cols=395 Identities=26% Similarity=0.385 Sum_probs=311.9
Q ss_pred HHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC
Q 043646 57 WLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG 136 (625)
Q Consensus 57 ~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~ 136 (625)
.+|++|+..+. .+.| +..+|||+++.++.|+.|.+++.+.+...++|++...+..+....+.++++|+.+++++|+
T Consensus 2 ~~~~~f~~~~~---~~~~-~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~ 77 (403)
T TIGR01979 2 NIRADFPILKR---KING-KPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINA 77 (403)
T ss_pred chhhhCchhcC---CCCC-CceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 46778866521 1223 4689999999999999999999998887788887655555666778899999999999999
Q ss_pred CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecCC
Q 043646 137 GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDD 212 (625)
Q Consensus 137 ~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~ 212 (625)
++.++|+|| +|++++++.++.++... .+++|++ |+++..+|+++...|+ ..|++++.++++.
T Consensus 78 ~~~~~v~~~-~g~t~~l~~~~~~~~~~-----------~~~~g~~--vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~ 143 (403)
T TIGR01979 78 ASDEEIVFT-RGTTESINLVAYSWGDS-----------NLKAGDE--IVISEMEHHANIVPWQLLAERTGATLKFIPLDD 143 (403)
T ss_pred CCCCeEEEe-CCHHHHHHHHHHHhhhh-----------cCCCCCE--EEECcchhhHHHHHHHHHHHhcCcEEEEEecCC
Confidence 843489998 78899999888776311 1467775 9999999999875553 4699999999998
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEE
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAI 292 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v 292 (625)
++.+|+++|+++++ ++|++|++++++|+||.+.|+++|+++||++|+++++|++|++|..++++..+ ++|++
T Consensus 144 ~~~~~~~~l~~~i~-----~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~ 215 (403)
T TIGR01979 144 DGTLDLDDLEKLLT-----EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQAL---DCDFY 215 (403)
T ss_pred CCCCCHHHHHHHhc-----cCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCcccc---CCCEE
Confidence 88999999999997 58999999999999999999999999999999999999999999999988876 89999
Q ss_pred EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHH
Q 043646 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 293 ~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~ 372 (625)
++|+||++| |.|+|++++++++ ++.+.|...||++..... + . ...+.....+++.||+++..++.....+...
T Consensus 216 ~~s~~K~~g-p~G~g~l~~~~~~--~~~~~~~~~g~~~~~~~~-~--~-~~~~~~~~~~~~~gt~~~~~~~al~~al~~~ 288 (403)
T TIGR01979 216 VFSGHKMYG-PTGIGVLYGKEEL--LEQMPPFLGGGEMIAEVS-F--E-ETTYNEAPHKFEAGTPNIAGVIGLGAAIDYL 288 (403)
T ss_pred EEecccccC-CCCceEEEEchHH--HhcCCCeecCCCceeecc-c--C-ccccCCChhhcCCCCccHHHHHHHHHHHHHH
Confidence 999999875 8889999999887 456667666665543221 1 1 1112233567889999988776443333222
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhc
Q 043646 373 EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLF 451 (625)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~ 451 (625)
...|.+.+.++...+++++++.|.++++++++++.+ ..+.++++|.+.. ++..++.+.| +++
T Consensus 289 ~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~----------------~~~~~~~~~L-~~~ 351 (403)
T TIGR01979 289 EAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEG----------------VHPHDVGTIL-DEE 351 (403)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCC----------------cCHHHHHHHH-hhC
Confidence 567899999999999999999999999999998753 2467888887632 2356788877 458
Q ss_pred CeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 452 GIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 452 gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
||.++.|++|..+.... .+ .++++|||+++|+|++|+++++++|+++++.
T Consensus 352 gI~v~~g~~~~~~~~~~-~~--------------------~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 352 GIAVRSGHHCAQPLMRR-FG--------------------VPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred CEEEcchhhhhHHHHHH-hC--------------------CCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999997543211 11 2489999999999999999999999987664
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=376.36 Aligned_cols=364 Identities=29% Similarity=0.454 Sum_probs=297.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.++.|+.|++++.+++..++.||+...+..+....++++++++.+++++|++++++|+|+ +|++.+++.++.
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~-~~~t~a~~~~~~ 79 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFT-SNGTEALNAVAS 79 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEE-SSHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccc-cccchhhhhhhh
Confidence 7999999999999999999999988899997766777888899999999999999999984489999 566668999988
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.+.. .+++|++ |+++..+|+++..+|. ..|++++.++.+.++.+|+++++++|+ +++
T Consensus 80 ~l~~------------~~~~g~~--vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~-----~~~ 140 (371)
T PF00266_consen 80 SLLN------------PLKPGDE--VLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN-----PDT 140 (371)
T ss_dssp HHHH------------HGTTTCE--EEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH-----TTE
T ss_pred cccc------------ccccccc--cccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc-----ccc
Confidence 8731 1467885 9999999999996665 358999999998889999999999998 689
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++|.||.+.|+++|+++||++|+++++|++|++|..++|++.+ ++|++++|+|| |+||.|+|+|+++++
T Consensus 141 ~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~---~~D~~~~s~~K-l~gp~G~g~l~v~~~ 216 (371)
T PF00266_consen 141 RLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL---GADFLVFSSHK-LGGPPGLGFLYVRPE 216 (371)
T ss_dssp SEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT---TESEEEEESTS-TTSSSTEEEEEEEHH
T ss_pred ceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccc---ccceeeecccc-cCCCCchhhheehhh
Confidence 99999999999999999999999999999999999999999999999988 89999999999 788999999999998
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
. ...++|...||+...... .....+.....+++.||+++..+++ .+++++ +..|++++.+|...+++++.
T Consensus 217 ~--~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~~~ 288 (371)
T PF00266_consen 217 A--IERLRPAKPGGGYLDFPS----LQEYGLADDARRFEGGTPNVPAIYALNEALKLL--EEIGIERIRERIRELAEYLR 288 (371)
T ss_dssp H--HHHHHTSSSSSSTTTHHH----HHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred h--hhcccccccccccccccc----chhcccccccccccccceeeehhhhHHHHHhhh--hccccccchhhhhhHHHHHH
Confidence 8 445667776665421110 0011123445678899999988764 455555 67899999999999999999
Q ss_pred HhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 393 GRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
+.|.++++++++++.. ..+.++++|.+.. ++..++.+.|.++ ||.++.|+.|+.+ ....++
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------~~~~~~~~~L~~~-~I~~~~G~~~~~~-~~~~~~ 350 (371)
T PF00266_consen 289 EALEELPGIEVLGPDDEPRRPSIVSFNLPG----------------SDADDVVKYLEER-GIAVSTGSACAGP-SLDILG 350 (371)
T ss_dssp HHHHHTTTEEESSSSCGGBGTTEEEEEETT----------------SSHHHHHHHHHHH-TEEEEESTTTCHH-HHHHHH
T ss_pred hhhhcCCceeEeeecccccccceEEEeecC----------------CCHHHHHHHHhhc-CEEEeccCcccHH-HHHHhC
Confidence 9999999999988533 5688899998832 3578999999775 9999999999844 333344
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~l 512 (625)
+ .+.+|||+++|+|++|||+|
T Consensus 351 ~--------------------~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 351 M--------------------GGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp T--------------------TTEEEEE-GTTSSHHHHHHH
T ss_pred C--------------------CCEEEEeccCCCCHHHHhhC
Confidence 3 38999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=366.93 Aligned_cols=353 Identities=21% Similarity=0.263 Sum_probs=285.2
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.++.|+.|.+++.+++...++||+...+..+..+.+.++++++.+++++|++++ +|+|| +|++++++.++.
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t-~~~t~a~~~~l~ 78 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-EIIFT-SGATESNNLAIK 78 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHHHHHHHHH
Confidence 5999999999999999999998877788988644555667788999999999999999876 89999 566776666554
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
.+... .+++|++ |+++..+|+++...|. ..|++++.++++.++.+|+++|+++++ ++++
T Consensus 79 ~~~~~-----------~~~~g~~--vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-----~~t~ 140 (364)
T PLN02651 79 GVMHF-----------YKDKKKH--VITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIR-----PDTA 140 (364)
T ss_pred HHHHh-----------ccCCCCE--EEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-----CCcE
Confidence 43100 1356774 9999999999877765 358999999998888999999999997 5799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++++|+||.+.|+++|+++||++|+++++|++|++|..++|+..+ ++|++++|+||| +||.|+|+++++++.
T Consensus 141 lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~---~~D~~~~s~hK~-~gp~G~g~l~v~~~~ 216 (364)
T PLN02651 141 LVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDL---GVDLMSISGHKI-YGPKGVGALYVRRRP 216 (364)
T ss_pred EEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccC---CCCEEEechhhh-CCCCceEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999988 899999999998 679999999999987
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
+..+.|...||+. +.+++.||+++.+++ .++++++. . +.+.+.+|.+.+++++++
T Consensus 217 --~~~l~p~~~g~~~------------------~~~~~~GT~~~~~~~~l~~al~~~~--~-~~~~i~~~~~~l~~~l~~ 273 (364)
T PLN02651 217 --RVRLEPLMSGGGQ------------------ERGRRSGTENTPLVVGLGAACELAM--K-EMDYDEKHMKALRERLLN 273 (364)
T ss_pred --CCCCCccccCCCc------------------cCCccCCCccHHHHHHHHHHHHHHH--H-hHHHHHHHHHHHHHHHHH
Confidence 5567777776654 345678999988875 46677763 2 458999999999999999
Q ss_pred hhCC-CCcEEEeCCCC-CCC-cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hH
Q 043646 394 RILP-NQNIQVLGNTS-VKR-QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GH 467 (625)
Q Consensus 394 ~L~~-l~gv~v~~~~~-~~~-~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~ 467 (625)
.|.+ +++++++++.+ ..+ .++++|.+. + +++.++++.|.+ |.++.|++|+.+. ++
T Consensus 274 ~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~-~---------------~~~~~~~~~L~~---i~v~~g~~c~~~~~~~~~ 334 (364)
T PLN02651 274 GLRAKLGGVRVNGPRDPEKRYPGTLNLSFA-Y---------------VEGESLLMGLKE---VAVSSGSACTSASLEPSY 334 (364)
T ss_pred HHHhhCCCEEEECCCCcccCcCCEEEEEeC-C---------------CCHHHHHHHhCC---EEEEchhhcCCCCCCcCH
Confidence 9985 78999999743 233 558888873 2 346788888832 9999999998652 23
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
.+..++..... ..+.+|+|+++|||++|||
T Consensus 335 ~~~~~g~~~~~-------------~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 335 VLRALGVPEEM-------------AHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred HHHHcCCChHH-------------hCceEEEEcCCCCCHHHcC
Confidence 33333321111 2489999999999999985
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=364.62 Aligned_cols=365 Identities=22% Similarity=0.297 Sum_probs=289.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||++++++.|+.|.+++.+++...++||+.. +..+..+.+.++++|+++++++|++++ +|+|| +|++.+++.++.
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t-~~~t~a~~~al~ 77 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFT-SGGTESDNTAIK 77 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHHHHHHHHH
Confidence 599999999999999999999887777888863 455667788899999999999999866 89998 677777777666
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
.+.. ..++++ +|+++..+|+++...|.. .|++++.++++.++.+|+++++++++ ++++
T Consensus 78 ~~~~------------~~~~~~--~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~-----~~~~ 138 (379)
T TIGR03402 78 SALA------------AQPEKR--HIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT-----DDTA 138 (379)
T ss_pred HHHH------------hcCCCC--eEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC-----CCcE
Confidence 5410 013344 599999999998766643 59999999998888899999999997 5799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
++++++++|+||.+.|+++|+++||++|+++++|++|++|..++|+..+ ++|++++|+||+ ++|.|+|+++++++.
T Consensus 139 lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~---~~D~~~~s~~K~-~gp~G~g~l~v~~~~ 214 (379)
T TIGR03402 139 LVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEM---NIDMLSLSGHKL-HGPKGVGALYIRKGT 214 (379)
T ss_pred EEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccC---CCCEEEEcHHHc-CCCCceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999887 899999999995 569999999998875
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
.+.|...|++. ..+++.||+++.++++ +++++.. .+++.+.++.+.+++++++
T Consensus 215 ----~~~p~~~g~~~------------------~~~~~~gt~~~~~~~~l~~al~~~~---~~~~~~~~~~~~l~~~l~~ 269 (379)
T TIGR03402 215 ----RFRPLLRGGHQ------------------ERGRRAGTENVPGIVGLGKAAELAT---EHLEEENTRVRALRDRLEA 269 (379)
T ss_pred ----CCCCcccCCcc------------------CCCcCCCCccHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHH
Confidence 24565555432 2345679998888764 4555552 2467888999999999999
Q ss_pred hhCC-CCcEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh---Hh
Q 043646 394 RILP-NQNIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG---HT 468 (625)
Q Consensus 394 ~L~~-l~gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~---~~ 468 (625)
.|.+ ++++++.++.. .+. ++++|.+.. +++.++...| +++||.+++|++|+.+.. +.
T Consensus 270 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~~~~~ 331 (379)
T TIGR03402 270 GLLARIPDARLNGDPT-KRLPNTVNISFEY----------------IEGEAILLLL-DMEGICASSGSACTSGSLEPSHV 331 (379)
T ss_pred HHHhhCCCEEEeCCCc-cCCCCEEEEEecC----------------CCHHHHHHhh-ccCCEEEEchhhcCCCCCCcCHH
Confidence 9985 89999988643 343 477776632 2466888888 558999999999986532 22
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+..++.+... .++.+|+|+++|+|++|||+++++|++++++...
T Consensus 332 ~~~lg~~~~~-------------~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 332 LRAMGVPHTA-------------AHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HHHcCCChhh-------------cCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2223211111 2589999999999999999999999999877543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=357.63 Aligned_cols=370 Identities=17% Similarity=0.236 Sum_probs=286.7
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||++++++.++.|++++.+++...++||+. .+.++.......+++++.+++.+|+.+.++|+|| +|++++++.++.
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t-~g~teal~~~~~ 78 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIIT-SCATESNNWVLK 78 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEe-CCHHHHHHHHHH
Confidence 59999999999999999999999888899986 3555666677788888888888887433489998 788998998877
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++... . .+++++. .|+++..+|+++...+. ..|++++.+|+++++.+|+++|+++++ ++++
T Consensus 79 ~~~~~-------~---~~~~~~~-~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~-----~~t~ 142 (382)
T TIGR03403 79 GVYFD-------E---ILKGGKN-HIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAIT-----EKTA 142 (382)
T ss_pred HHHHh-------h---cccCCCC-EEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcc-----cCCe
Confidence 65210 0 0134322 59999999999987754 469999999998888999999999987 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
++++++++|+||.+.|+++|.++|+++|+++++|++++.|..++++..+ ++|++++|+|||+| |.|+|++++++..
T Consensus 143 lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~g-p~G~g~l~vr~~~ 218 (382)
T TIGR03403 143 LVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKA---GVDFLSFSAHKFHG-PKGVGGLYIRKGV 218 (382)
T ss_pred EEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCcccc---CCCEEEEcchhhCC-CCceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999998876 89999999999865 8889999999875
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
.+.|...|++. ..+++.||+++.+++.++.++.... .+++.+.++.+.+++++.+.|
T Consensus 219 ----~~~p~~~g~~~------------------~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L 275 (382)
T TIGR03403 219 ----ELTPLFHGGEH------------------MGGRRSGTLNVPYIVAMGEAMRLAN-EYLDFEKSHVRRLRDRLEDAL 275 (382)
T ss_pred ----CCCCcccCCCC------------------CCCcccCCcChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHH
Confidence 24455444432 1234569999888764433332212 247788899999999999999
Q ss_pred CCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHhhhc
Q 043646 396 LPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHTLLA 471 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~~l~ 471 (625)
.++++++++++.+ .+.+ +++|.+ ++ ++...+...| +++||.++.|++|+... .+.+..
T Consensus 276 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~---------------~~~~~~~~~L-~~~gI~v~~g~~c~~~~~~~~~v~~~ 337 (382)
T TIGR03403 276 LELPDVFVVGDRE-HRVPNTILISI-KG---------------VEGEAMLWDL-NKAGIAASTGSACASEDLEANPVMVA 337 (382)
T ss_pred hcCCCEEEECCCC-CCcCCEEEEEe-CC---------------CCHHHHHHhh-ccCCEEEEchhccCCCCCCcCHHHHH
Confidence 9999999998743 3544 556654 22 3466788887 45799999999997431 122222
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
++.+.. ...+.+|+|+++++|++|||+++++|++++++..
T Consensus 338 ~g~~~~-------------~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 338 IGADKE-------------LAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred cCCChH-------------HhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 221110 0247899999999999999999999999887643
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=360.11 Aligned_cols=364 Identities=19% Similarity=0.234 Sum_probs=287.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|||+++.++.|+.|.+++.+++...++||+...+..+....+.++++|+.+++++|++++ +|+|+ +|++++++.++
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~a~~~~l 81 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFT-SGATESNNLAI 81 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHHHHHHHH
Confidence 58999999999999999999888866678887543434555667899999999999999876 89998 67888788776
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++... ..++|++ |+++..+|+++..+|+ ..|++++.+++++++.+|+++|+++++ +++
T Consensus 82 ~~l~~~-----------~~~~g~~--Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-----~~~ 143 (402)
T TIGR02006 82 KGIAHF-----------YKSKGNH--IITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR-----DDT 143 (402)
T ss_pred HHHHHh-----------hcCCCCE--EEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-----CCC
Confidence 654200 0246664 9999999999987764 359999999998888999999999987 578
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++|+||.+.|+++|+++||++|+++++|++|++|+.++++..+ ++|++++|+||++| |.|+|+++++++
T Consensus 144 ~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~---~~D~~~~s~~K~~g-p~G~G~l~~~~~ 219 (402)
T TIGR02006 144 ILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNEL---KVDLMSISGHKIYG-PKGIGALYVRRK 219 (402)
T ss_pred EEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCcccc---CCCEEEEehhhhcC-CCceEEEEEccC
Confidence 99999999999999999999999999999999999999999999999876 89999999999865 989999999987
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
. ...+.|...|++. ..+++.||+++.+++. ++++++ . .+++.+.++.+.++++++
T Consensus 220 ~--~~~~~~~~~g~~~------------------~~~~~~gt~~~~~~~al~~al~~~--~-~~~~~~~~~~~~l~~~l~ 276 (402)
T TIGR02006 220 P--RVRLEALIHGGGH------------------ERGMRSGTLPTHQIVGMGEAFRIA--K-EEMAQDTAHVLALRDRLL 276 (402)
T ss_pred C--CCCCCceecCCCc------------------cCCccCCCccHHHHHHHHHHHHHH--H-HhHHHHHHHHHHHHHHHH
Confidence 6 3345555555443 3457789999887754 445554 2 368888999999999999
Q ss_pred HhhCCCCcEEEeCCCCCCCcc---eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh----
Q 043646 393 GRILPNQNIQVLGNTSVKRQA---ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---- 465 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~---i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---- 465 (625)
+.|+++++++++++. ..+.+ +++|... +..++...| .+|.++.|++|+...
T Consensus 277 ~~l~~~~~v~~~~~~-~~~~p~~~~v~f~~~------------------~~~~~~~~l---~~i~v~~G~~c~~~~~~~~ 334 (402)
T TIGR02006 277 NGIKSIEEVYLNGDL-EHRVPGNLNVSFNYV------------------EGESLIMAL---KDLAVSSGSACTSASLEPS 334 (402)
T ss_pred HHHhcCCCEEEeCCc-cccCCCeEEEEEeCc------------------CHHHHHHhc---CCEEEechhhcCCCCCCcc
Confidence 999999999998764 33444 3444321 244566555 489999999997521
Q ss_pred -hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 466 -GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 466 -~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
....+++.. .. ..+++|+|+++++|++|||+++++|+++++....
T Consensus 335 ~~l~~lg~~~--~~-------------~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 335 YVLRALGIND--EL-------------AHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred HHHHHcCCCh--hh-------------cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 112222221 11 2589999999999999999999999999887654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=350.37 Aligned_cols=376 Identities=23% Similarity=0.324 Sum_probs=294.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
.+.+|||+++++|.++.|++++.+++..+++|||.. .+++.....++++|+.+|+++|+++.+ |+|| +|+|+++++
T Consensus 42 ~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~d-IiFt-s~ATEs~Nl 117 (428)
T KOG1549|consen 42 TRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSD-IVFT-SGATESNNL 117 (428)
T ss_pred CccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCc-EEEe-CCchHHHHH
Confidence 368999999999999999999999999999999986 356677777999999999999999985 9999 789999999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
++..+.+.. ..+.+.+||+...+|+++..+|+. .|++|+++|++.++.+|++.+++.|+ +
T Consensus 118 vl~~v~~~~------------~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~-----~ 180 (428)
T KOG1549|consen 118 VLKGVARFF------------GDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR-----S 180 (428)
T ss_pred HHHHhhccc------------cccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC-----C
Confidence 998885321 112333799999999999988865 59999999999889999999999999 7
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
+|++|.+.+++|.+|++.|+++|+++|+++|+++++|+||++|.+++|++++ ++|+++++.|||+|.|+ +|+||++
T Consensus 181 ~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~el---n~D~~s~s~HK~ygp~~-iGaLYvr 256 (428)
T KOG1549|consen 181 KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQEL---NADFLSISAHKIYGPPG-IGALYVR 256 (428)
T ss_pred CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHc---CchheeeecccccCCCc-ceEEEEc
Confidence 9999999999999999999999999999999999999999999999999999 99999999999998555 9999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
+..-++ ...|.+.|||. ++.++.||.+....+ .+|.++..++..+.+.+..+ +...
T Consensus 257 ~~~~~~-~~~p~~~GGgq------------------~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~---~~~~ 314 (428)
T KOG1549|consen 257 RKRPRL-RVEPPLSGGGQ------------------ERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKR---LSEK 314 (428)
T ss_pred cCCCcc-cccCcccCCcc------------------ccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHH---HHHH
Confidence 733212 24577777777 677889997665543 56677775554455554443 4445
Q ss_pred HHHhh-CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch---hh
Q 043646 391 ALGRI-LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP---YG 466 (625)
Q Consensus 391 l~~~L-~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~---~~ 466 (625)
+...+ ..++.+.+.++......+.++|.+... .+.-+.. +...+.++.|.+|... ..
T Consensus 315 ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~----------------~g~~~~~---~~~~~~l~s~~a~~~~~~eps 375 (428)
T KOG1549|consen 315 LLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYV----------------EGESLLM---DLKDVALSSGSACTSASLEPS 375 (428)
T ss_pred HHHHHhhhCchhhccCCcccccccceeeecccc----------------cCcchhh---hhhhhhhcccchhhcCCCCcc
Confidence 55554 446777777775444445555554311 1112222 3346788888888632 12
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCc
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLY 530 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y 530 (625)
..+...+.+... ....||||++.|++++|++++++.+++.+.....+-|++
T Consensus 376 y~l~~~G~~~~~-------------~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~ 426 (428)
T KOG1549|consen 376 YVLRAIGVDEDL-------------AHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLW 426 (428)
T ss_pred hhhhhcCcchhh-------------hcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCC
Confidence 222333332222 368899999999999999999999999999888877776
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=346.74 Aligned_cols=367 Identities=23% Similarity=0.331 Sum_probs=289.2
Q ss_pred EeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 79 TYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
+|||+++++ +.|+.+.+++.+.+.....+++...+..........+++++.+++++|++..++|+|| +|+++++..++
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~al~~~~ 79 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFT-NNATTALNIAL 79 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEe-CCHHHHHHHHH
Confidence 599999877 6889999999888876545665443434445567889999999999999755579998 67788888877
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++..+|+++..+|. ..|++++.++.+.++.+|+++|+++++ ++
T Consensus 80 ~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-----~~ 137 (376)
T TIGR01977 80 KGL---------------LKEGDH--VITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK-----TN 137 (376)
T ss_pred Hhc---------------cCCCCE--EEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcC-----CC
Confidence 765 577885 9999999999876553 349999999988888899999999997 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+++|++++++|+||.+.|+++|.++||++|+++++|+||++|..++++..+ ++|++++|+|||+++|.|+|++++++
T Consensus 138 ~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~g~g~l~~~~ 214 (376)
T TIGR01977 138 TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTEL---AIDMLAFTGHKGLLGPQGTGGLYIRE 214 (376)
T ss_pred CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhc---CCCEEEecccccccCCCCceEEEEcC
Confidence 999999999999999999999999999999999999999999999998876 89999999999999999999999988
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
+. .+.+...++... +...+ ........+++.||+++..++ .++++++ ...|.+.+.+|.+.+++++
T Consensus 215 ~~----~~~~~~~~~~~~-~~~~~-----~~~~~~~~r~~~~t~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~l~~~~ 282 (376)
T TIGR01977 215 GI----KLKPLKSGGTGS-HSALI-----DQPSELPDRFESGTLNTPGIAGLNAGIKFI--EKIGIANIAKKECMLTEKL 282 (376)
T ss_pred Cc----CcCceecCCCcc-ccccc-----cccccchhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHH
Confidence 76 134444433221 10000 111223567888998887664 3556665 5679999999999999999
Q ss_pred HHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 392 LGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
.+.|.++++++++++.+ ..+.++++|.+.. ++..++.+.|.+++||.++.|.+|+... +..+
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~-~~~~ 345 (376)
T TIGR01977 283 LNGLREINKVKIYGPADPANRVGVVSFTVEG----------------IDSEEVADILDEKFDIATRTGLHCAPLA-HKTI 345 (376)
T ss_pred HHHHhcCCCeEEeCCCCccccCCeEEEEECC----------------CCHHHHHHHHhccCCEEEEcccccchHH-HHHh
Confidence 99999899999988643 3467888887732 2467899999776799999999887321 1111
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+ ..+.+.+||+++.++|++|+++++++|++
T Consensus 346 g------------------~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 346 G------------------TFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred C------------------CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1 11358999999999999999999999985
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=343.50 Aligned_cols=370 Identities=19% Similarity=0.238 Sum_probs=284.8
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhC--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVL--PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~--~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
.+|||+++.++.|+.|.+++.+++. ..++|++...+..+....+.++++++.+++++|++++ +++|+ +|+|++++.
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~-~g~t~al~~ 81 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFT-SGATESDNL 81 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEe-CCHHHHHHH
Confidence 5899999999999999999999886 5678887643334444567889999999999999876 79998 677777887
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
++.++... .+++||+ |++++.+|+++..+|+. .|++++.++.++++.+|+++|+++|+ +
T Consensus 82 ~l~~l~~~-----------~~~~gd~--Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~-----~ 143 (404)
T PRK14012 82 AIKGAAHF-----------YQKKGKH--IITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMR-----D 143 (404)
T ss_pred HHHHHHHh-----------hcCCCCE--EEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcC-----C
Confidence 76655200 0356775 99999999999877754 49999999998888999999999997 5
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
++++|++++++|+||.+.|+++|.++||++|+++++|+||++|..++++..+ ++|++++|+||++| |.|+|+++++
T Consensus 144 ~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~g-p~g~G~l~~~ 219 (404)
T PRK14012 144 DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKL---KVDLMSFSAHKIYG-PKGIGALYVR 219 (404)
T ss_pred CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccC---CCCEEEEehhhccC-CCceEEEEEe
Confidence 7999999999999999999999999999999999999999999999988876 89999999999765 8889999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
++. ...+.|...|++. ..+++.||+++..++. +++.+. ..+.+.+.++.+.++++
T Consensus 220 ~~~--~~~~~~~~~g~~~------------------~~~~~~gt~~~~~~~~l~~al~~~---~~~~~~~~~~~~~l~~~ 276 (404)
T PRK14012 220 RKP--RVRLEAQMHGGGH------------------ERGMRSGTLPTHQIVGMGEAARIA---KEEMATENERIRALRDR 276 (404)
T ss_pred cCC--CCCCCceecCCCc------------------cCCccCCCcCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 876 3345565555543 2346678887766653 444443 23466788899999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcc---eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh--
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQA---ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY-- 465 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~---i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~-- 465 (625)
+.+.|+++++++++++.. .+.+ +++|...+ ..++...| .++.+++|++|....
T Consensus 277 l~~~L~~~~~i~~~~~~~-~~~~~~~~~~~~~~~------------------~~~~~~~l---~~~~i~~g~~~~~~~~~ 334 (404)
T PRK14012 277 LWNGIKDIEEVYLNGDLE-QRVPGNLNVSFNYVE------------------GESLIMAL---KDLAVSSGSACTSASLE 334 (404)
T ss_pred HHHHHhcCCCEEEeCCcc-ccCCCEEEEEEeCcC------------------HHHHHHhC---CCeEEEchhhhCCCCCC
Confidence 999999999998876432 2322 34443321 34566666 378899999887421
Q ss_pred ---hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCcc
Q 043646 466 ---GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYH 531 (625)
Q Consensus 466 ---~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~ 531 (625)
....+++. +.+..+.||||+++++|++|+|+++++|++++++.+++.++|.
T Consensus 335 ~~~~~~~~~~~---------------~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~~~~~ 388 (404)
T PRK14012 335 PSYVLRALGLN---------------DELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELSPLWE 388 (404)
T ss_pred CCHHHHHcCCC---------------hhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 11111211 1113589999999999999999999999999988766555553
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=340.60 Aligned_cols=369 Identities=18% Similarity=0.210 Sum_probs=281.5
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|||++++++.|+.|.+++.+++...++|++.. +..+....+.++++|+.+++++|++++ +|+|+ +|+++++..++
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~-~g~t~a~~~~~ 77 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAASQYFGNESSL-HDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFT-SGGTESNYLAI 77 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHHHHHHHH
Confidence 3799999999999999999999888788888753 556777788999999999999999776 89998 68788777766
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++... ..++|+ +|++++.+|+++...+ +..|++++.++++.++.+|+++|+++++ +++
T Consensus 78 ~~~~~~-----------~~~~g~--~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-----~~~ 139 (381)
T PRK02948 78 QSLLNA-----------LPQNKK--HIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAIT-----PDT 139 (381)
T ss_pred HHHHHh-----------ccCCCC--EEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcC-----CCC
Confidence 655100 013566 4999999999987765 3469999999998888999999999987 578
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++|+||.+.|+++|.++|+++|+++++|++|++|..++++..+ ++|++++|+||++| |.|+|+++++++
T Consensus 140 ~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~---~~d~~~~s~~K~~g-p~G~G~l~~~~~ 215 (381)
T PRK02948 140 VLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEM---GIDSLSVSAHKIYG-PKGVGAVYINPQ 215 (381)
T ss_pred EEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccC---CCCEEEecHHhcCC-CCcEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999988877 89999999999876 888999999887
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
. .+.+...++.. ..+++.||+++.+++++..++.... .+.+.+.++.+.+++++++.
T Consensus 216 ~----~~~~~~~~~~~------------------~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~ 272 (381)
T PRK02948 216 V----RWKPVFPGTTH------------------EKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQ 272 (381)
T ss_pred C----CCCCcccCCCC------------------CCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5 12222222111 3456788988887764333332111 24678889999999999999
Q ss_pred hCCCCcEEEeCCC-CCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHhh
Q 043646 395 ILPNQNIQVLGNT-SVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHTL 469 (625)
Q Consensus 395 L~~l~gv~v~~~~-~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~~ 469 (625)
|+++ ++++.... ...+.+ +++|.+.. +++.++...| +++||.++.|++|+.++ ++.+
T Consensus 273 L~~~-~~~v~~~~~~~~~~~~i~~~~~~~----------------~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~~~ 334 (381)
T PRK02948 273 IQTL-PLPIEVEGHSTSCLPHIIGVTIKG----------------IEGQYTMLEC-NRRGIAISTGSACQVGKQEPSKTM 334 (381)
T ss_pred HhcC-CCCEEEeCCCccCcCCEEEEEeCC----------------CCHHHHHHhc-ccCCEEEEchHhcCCCCCCCCHHH
Confidence 9987 44433211 122333 56666532 2356777777 56899999999997532 2333
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
..++..... ..+++|||+++++|++|+++++++|++++++..+
T Consensus 335 ~~~~~~~~~-------------~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 335 LAIGKTYEE-------------AKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred HHcCCChHH-------------hCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 233211000 1489999999999999999999999998876554
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=341.66 Aligned_cols=373 Identities=24% Similarity=0.290 Sum_probs=290.3
Q ss_pred HHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 043646 55 LAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL 134 (625)
Q Consensus 55 ~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~ 134 (625)
++.+|++|+..+ +...+|||+++.+++|+.+.+++.+.+.....+++.. +.......+..+++++.+++++
T Consensus 3 ~~~~r~~f~~~~--------~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ia~~~ 73 (397)
T TIGR01976 3 VEAVRGQFPALA--------DGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRGGA-YESSRRADQVVDDAREAVADLL 73 (397)
T ss_pred hhHHHhhCCcCC--------CCCeEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHHHHHHc
Confidence 456888887651 1126999999999999999999999886655565542 4444556778899999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEec
Q 043646 135 GGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGL 210 (625)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~ 210 (625)
|++++ +|+++ +|++.+++.+..++.. .+++||+ |++++.+|+++...| +..|++++.+++
T Consensus 74 ~~~~~-~v~~~-~~~t~~l~~~~~~~~~------------~~~~gd~--vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 137 (397)
T TIGR01976 74 NADPP-EVVFG-ANATSLTFLLSRAISR------------RWGPGDE--VIVTRLDHEANISPWLQAAERAGAKVKWARV 137 (397)
T ss_pred CCCCC-eEEEe-CCHHHHHHHHHHHHHh------------cCCCCCE--EEEcCCchHhHHHHHHHHHHhcCCEEEEEec
Confidence 99876 78888 6888888877766521 1468885 999999999987665 346999999998
Q ss_pred CC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCC
Q 043646 211 DD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 211 ~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
+. ++.+|+++++++++ +++++|++++++|+||.+.|+++|+++||++|+++++|++|+.|..++++.++ ++
T Consensus 138 ~~~~~~~~~~~l~~~i~-----~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~ 209 (397)
T TIGR01976 138 DEATGELHPDDLASLLS-----PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQAT---GA 209 (397)
T ss_pred cccCCCcCHHHHHHhcC-----CCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHc---CC
Confidence 86 68899999999997 57999999999999999999999999999999999999999999888888776 89
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal 367 (625)
|++++|+|||+| |. +|++++++++ ++.+.+....+ .+.....+++.||+++..++ .+++
T Consensus 210 d~~~~s~~K~~g-~~-~G~l~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~gt~~~~~~~~l~~al 270 (397)
T TIGR01976 210 DFLTCSAYKFFG-PH-MGILWGRPEL--LMNLPPYKLTF---------------SYDTGPERFELGTPQYELLAGVVAAV 270 (397)
T ss_pred CEEEEechhhcC-Cc-eEEEEEcHHH--HhhCCCccccC---------------ccCCCcchhcCCCCCHHHHHHHHHHH
Confidence 999999999986 65 7999999887 44454433211 01122467889999987664 4566
Q ss_pred HHHHHhhcC--------------HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccc
Q 043646 368 AFWVKEYIG--------------YEVIKKQEDVYIESALGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 368 ~~~~~~~~g--------------~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
+++. ..| ++.+.++...+++++++.|.++++++++++.+ ..+.++++|.+..
T Consensus 271 ~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 337 (397)
T TIGR01976 271 DYLA--GLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHG----------- 337 (397)
T ss_pred HHHH--HhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCC-----------
Confidence 6652 333 67788899999999999999998899987632 3467888776632
Q ss_pred cCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 043646 433 ERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512 (625)
Q Consensus 433 ~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~l 512 (625)
.+..++.+.|.+ +||.++.|++|..+. ...+++.. +.+++|||+++++|++|++++
T Consensus 338 -----~~~~~l~~~L~~-~gI~v~~~~~~~~~~-~~~~~~~~-----------------~~~~iRis~~~~~t~~di~~l 393 (397)
T TIGR01976 338 -----LPPQRVVRRLAD-QGIDAWAGHFYAVRL-LRRLGLND-----------------EGGVVRVGLAHYNTAEEVDRL 393 (397)
T ss_pred -----cCHHHHHHHHHH-CCeEEEeCccchHHH-HHHhCCCC-----------------CCCeEEEEeeccCCHHHHHHH
Confidence 235678888854 799999999987433 22222210 247899999999999999999
Q ss_pred HHHH
Q 043646 513 LAAL 516 (625)
Q Consensus 513 l~aL 516 (625)
+++|
T Consensus 394 ~~~l 397 (397)
T TIGR01976 394 LEAL 397 (397)
T ss_pred HHhC
Confidence 9875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=332.16 Aligned_cols=367 Identities=29% Similarity=0.449 Sum_probs=289.8
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.+++|+.+++++.+.+...+.||+.+.+..+....+.+.++++.+++++|++.++++++| +|++.+++.++.
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~a~~~~~~ 79 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFT-RNTTEAINLVAY 79 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEe-CCHHHHHHHHHH
Confidence 5999999999999999999999888888988765667778889999999999999999834488998 678888888888
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
++... ..+|++ |+++..+|++....+ +..|++++.|+.+.++.+|+++|++++. +++
T Consensus 80 ~l~~~------------~~~g~~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-----~~~ 140 (373)
T cd06453 80 GLGRA------------NKPGDE--IVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLT-----ERT 140 (373)
T ss_pred Hhhhc------------CCCCCE--EEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhc-----CCc
Confidence 77310 016775 999999999975443 3569999999998888899999999997 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++|+||.+.|+++|.++|+++|+++++|++++.+..++++..+ ++|++++|+|||+++ .|+|+++++++
T Consensus 141 ~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~-~g~g~~~~~~~ 216 (373)
T cd06453 141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDL---GCDFLAFSGHKMLGP-TGIGVLYGKEE 216 (373)
T ss_pred eEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeecccc---CCCEEEeccccccCC-CCcEEEEEchH
Confidence 99999999999999999999999999999999999999999888888776 889999999999986 66899999988
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
. ++.+.+...||...... ...... +.....+++.||+++..++. ++++++ ...|.+.+.++.+++++++.
T Consensus 217 ~--~~~~~~~~~g~~~~~~~---~~~~~~-~~~~~~~~~~~t~~~~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~l~ 288 (373)
T cd06453 217 L--LEEMPPYGGGGEMIEEV---SFEETT-YADLPHKFEAGTPNIAGAIGLGAAIDYL--EKIGMEAIAAHEHELTAYAL 288 (373)
T ss_pred H--hhcCCCeecCCCccccc---cccccc-cCCCccccCCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHH
Confidence 7 45566655454432211 111111 12234567788998777653 445554 55688999999999999999
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|.++++++++.+. ..+.++++|.+. + ++..++.+.|.+ +||.+++|+.|..+.... .+
T Consensus 289 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~---------------~~~~~i~~~l~~-~gi~i~~g~~~~~~~~~~-~~- 348 (373)
T cd06453 289 ERLSEIPGVRVYGDA-EDRAGVVSFNLE-G---------------IHPHDVATILDQ-YGIAVRAGHHCAQPLMRR-LG- 348 (373)
T ss_pred HHHhcCCCeEEeCCc-cccCCeEEEEEC-C---------------cCHHHHHHHHHH-CCEEeccCccchhHHHHH-hC-
Confidence 999999999988543 335677777652 1 235688888855 799999999887543221 11
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
.++++|||+++++|++|+|+++++|
T Consensus 349 -------------------~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 349 -------------------VPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred -------------------CCCeEEEEecCCCCHHHHHHHHhhC
Confidence 2589999999999999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=337.65 Aligned_cols=384 Identities=16% Similarity=0.164 Sum_probs=279.7
Q ss_pred CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhh-HHHHHHHHHHH
Q 043646 49 KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVG-QRMTKMVHEAS 127 (625)
Q Consensus 49 ~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~-~~~~~~~~~~~ 127 (625)
.+.++.++.+|++|+.... . +.+..+|||+++.++.|+.|.+++.+++..+..+++.. +..+ .......++.+
T Consensus 4 ~~~~~~~~~~r~~f~~~~~---~--~~~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (406)
T TIGR01814 4 LDEADPLRALRDEFHLPKI---G--DENAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRG-HNTGKAPWFTLDESLL 77 (406)
T ss_pred ccccChHHHHHHhcCCCcc---c--CCCCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhcc-CccCCCChhhhhhhhc
Confidence 4456778889999975410 0 01457999999999999999999988775432222221 1111 12223334343
Q ss_pred HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHH----HcC
Q 043646 128 NYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWR----QSL 202 (625)
Q Consensus 128 ~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~----~~G 202 (625)
+ + +++|++++ +|+|| +|+|++++.++..+ +++++ +.+|+++..+|+++..+|. ..|
T Consensus 78 ~-~-~l~g~~~~-~v~~~-~~~t~~l~~~~~~~---------------~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g 138 (406)
T TIGR01814 78 K-L-RLVGAKED-EVVVM-NTLTINLHLLLASF---------------YKPTPKRYKILLEAKAFPSDHYAIESQLQLHG 138 (406)
T ss_pred c-c-cccCCCCC-cEEEe-CCchHHHHHHHHHh---------------cCCcCCccEEEecCCCCChHHHHHHHHHHhcC
Confidence 3 5 89999876 89998 67889999988775 23432 2268889999999877664 458
Q ss_pred CeE----EEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 203 AEV----VEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 203 ~~v----v~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
+++ +.++.+.++.+|++++++.++. ..++|++|++++++|.||.+.|+++|+++||++|+++++|++|++|..+
T Consensus 139 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~ 216 (406)
T TIGR01814 139 LTVEESMVQIEPREEETLRLEDILDTIEK--NGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVP 216 (406)
T ss_pred CCcccceEEeccCCCCccCHHHHHHHHHh--cCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcc
Confidence 887 4666666678899999998863 1257999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
+|++.+ ++|++++|+|||+++|.| |+++++++. ...+.|...||........|.. ...+...+.+++.|||+
T Consensus 217 id~~~~---gvD~~~~s~hK~l~g~pG-~~l~v~~~~--~~~~~p~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~GT~~ 288 (406)
T TIGR01814 217 LDLHDW---GVDFACWCTYKYLNAGPG-AGAFVHEKH--AHTERPRLAGWWGHARPTRFKM--DNTLGLIPCGFRISNPP 288 (406)
T ss_pred cccccC---CCCEEEEcCccccCCCCC-eEEEEehhh--hhhcCCCCCcccCCCCcccccc--ccccCCCccceeeCCcc
Confidence 999887 899999999999976667 777776665 2335565555432111111110 01111224578899999
Q ss_pred HHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCC-CCCcceEEEEeccCCCCCCcccc
Q 043646 359 IVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 359 ~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
+.+++. ++++++ ...|.+.+.++.+.+++++++.|.++ ++++++++.+ ..+.++++|.+. .
T Consensus 289 ~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~--------- 356 (406)
T TIGR01814 289 ILSVAALRGSLDIF--DQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V--------- 356 (406)
T ss_pred HHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C---------
Confidence 888754 556665 56799999999999999999999775 4699998743 346788888763 1
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFE 510 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid 510 (625)
++.++.+.|. ++||.+... .++.+|||+ ++|+|++||+
T Consensus 357 -------~~~~~~~~L~-~~gi~v~~~---------------------------------~~~~iRiS~~~~~nt~~did 395 (406)
T TIGR01814 357 -------PGKAVFQALI-KRGVIGDKR---------------------------------EPSVIRVAPVPLYNTFVDVY 395 (406)
T ss_pred -------CHHHHHHHHH-HCCEEEecc---------------------------------CCCeEEEechhccCCHHHHH
Confidence 2567888885 469986411 137899999 6999999999
Q ss_pred HHHHHHHHHH
Q 043646 511 FILAALEFIA 520 (625)
Q Consensus 511 ~ll~aL~~~~ 520 (625)
+++++|++++
T Consensus 396 ~l~~~l~~~~ 405 (406)
T TIGR01814 396 DAVNVLEEIL 405 (406)
T ss_pred HHHHHHHHHh
Confidence 9999999764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=321.61 Aligned_cols=345 Identities=20% Similarity=0.259 Sum_probs=269.4
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|||+++.+++|+.|.+++.+++...++||+...+..+....+.++++++++++++|++++ +|+|| +|++++++.++.+
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~a~~~~l~~ 78 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-EVIFT-SGATESNNLAILG 78 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHHHHHHHHHH
Confidence 899999999999999999998866678887644445666778899999999999999876 79998 6888878777665
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
+... ...+|+ .+|+++..+|+++...|+. .|++++.++++.++.+|+++|+++++ +++++
T Consensus 79 l~~~-----------~~~~g~-~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~-----~~~~l 141 (353)
T TIGR03235 79 LARA-----------GEQKGK-KHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR-----PDTLL 141 (353)
T ss_pred HHHh-----------cccCCC-CeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC-----CCCEE
Confidence 5200 012442 2699999999999877643 59999999998888899999999987 57899
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
|++++++|+||.+.|+++|+++|+++|+++++|++|++|..+++++.+ ++|++++|+|||+ +|.|+|+++++++..
T Consensus 142 v~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~-gp~g~g~l~~~~~~~ 217 (353)
T TIGR03235 142 VSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSAD---RIDLISCSGHKIY-GPKGIGALVIRKRGK 217 (353)
T ss_pred EEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccccccc---CCCEEEeehhhcC-CCCceEEEEEccCcc
Confidence 999999999999999999999999999999999999999999999876 8999999999996 598999999998863
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
....+.|...+++. ..+++.||+++..++ .++++++ ..+.+.+.++.+++++++++.
T Consensus 218 ~~~~~~~~~~~~~~------------------~~~~~~gt~~~~~~~al~~al~~~---~~~~~~~~~~~~~l~~~l~~~ 276 (353)
T TIGR03235 218 PKAPLKPIMFGGGQ------------------ERGLRPGTLPVHLIVGMGEAAEIA---RRNAQAWEVKLRAMRNQLRDA 276 (353)
T ss_pred cccccCceeeCCCC------------------cCccccCCCChHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHH
Confidence 21224555554432 356778998877665 4556654 247889999999999999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHhhhc
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHTLLA 471 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~~l~ 471 (625)
|.+ +|++++++......++++|.+ ++ ++..++.+.|. + +|.+++|.+|+... .+.+..
T Consensus 277 l~~-~g~~~~~~~~~~~~~i~~~~~-~~---------------~~~~~v~~~L~-~-~i~v~~g~~~~~~~~~~~~~l~~ 337 (353)
T TIGR03235 277 LQT-LGVKLNGDPAETIPHILNFSI-DG---------------VNSEALIVNLR-A-DAAVSTGSACSSSKYEPSHVLQA 337 (353)
T ss_pred hcc-CCeEEeCCcccccCCEEEEEe-CC---------------cCHHHHHHHHh-C-CeEEEchhhcCCCCCCCCHHHHH
Confidence 988 799998764333456777765 22 34678888884 3 89999999997431 244445
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
++.+.... .+.+|||+
T Consensus 338 ~g~~~~~~-------------~~~~r~s~ 353 (353)
T TIGR03235 338 MGLDTDRA-------------RGAIRFSW 353 (353)
T ss_pred cCCCHHHh-------------CccEEEeC
Confidence 54433221 47899886
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=305.32 Aligned_cols=358 Identities=15% Similarity=0.042 Sum_probs=270.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
..||...+-...++.|.+++...+. .| .+....++++++++++++++|++.++.+++++ ++++++..++
T Consensus 9 ~~~l~~pGP~~~~~~V~~a~~~~~~-----~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~-~gt~a~~~a~ 77 (401)
T PLN02409 9 RNHLFVPGPVNIPERVLRAMNRPNE-----DH-----RSPAFPALTKELLEDVKYIFKTKSGTPFIFPT-TGTGAWESAL 77 (401)
T ss_pred CceeccCCCCCCCHHHHHHhcCCCC-----CC-----CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcHHHHHHHH
Confidence 4477777778888899888855331 12 34567889999999999999998655678885 5566677666
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
..+ +++||+ |+++...|++.. ...+..|++++.++.+.++.+|+++++++++++. .++++
T Consensus 78 ~~~---------------~~~Gd~--Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~-~~~~k 139 (401)
T PLN02409 78 TNT---------------LSPGDK--VVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDT-NHKIK 139 (401)
T ss_pred Hhc---------------CCCCCE--EEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCc-CCCcc
Confidence 554 578986 888888888764 3345679999999988766689999999998410 02789
Q ss_pred EEEEecccCccccccCHHHHHHH--HHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 236 LGSFSACSNVTGIYSDTRSIARL--LHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~l--a~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+|+++|++|+||.+.|+++|+++ ||++|+++++|++|++|..++++..+ ++|++++|+||||++|.|+|++++++
T Consensus 140 ~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~---~~D~~~~s~~K~l~~P~G~G~l~~~~ 216 (401)
T PLN02409 140 AVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEW---GVDVALTGSQKALSLPTGLGIVCASP 216 (401)
T ss_pred EEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccccc---CccEEEEcCccccCcCCCcceeEECH
Confidence 99999999999999999999999 99999999999999999999999887 89999999999999999999999998
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhh-hhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE-RENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~-~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
+. ++.+.+........+ |. .+....+. .+..+||++..+. .++++++ ...|.+++.++.+.++++
T Consensus 217 ~~--~~~~~~~~~~~~~~~----~~----~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~ 284 (401)
T PLN02409 217 KA--LEASKTAKSPRVFFD----WA----DYLKFYKLGTYWPYTPSIQLLYGLRAALDLI--FEEGLENVIARHARLGEA 284 (401)
T ss_pred HH--HHHHhcCCCCCeecC----HH----HHHHHHhcCCCCCCCccHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 87 333322111000000 00 00000011 1235688876654 5667766 467999999999999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+++.|.++ |++++.+.+..+.+.+++...+. +++..++.+.|.+++||.+.+|....
T Consensus 285 l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~--------------~~~~~~l~~~l~~~~~i~i~~G~~~~-------- 341 (401)
T PLN02409 285 TRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPE--------------GIDSAEIVKNAWKKYNLSLGLGLNKV-------- 341 (401)
T ss_pred HHHHHHHc-CCeeccCChhhcccceEEEeCCC--------------CCCHHHHHHHHHHhCCEEEEcCCCcc--------
Confidence 99999887 89988764345666555444332 24567888888788999999875431
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+.+.+||+...|++.+|+.+++++|++++.+.
T Consensus 342 ---------------------~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 342 ---------------------AGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred ---------------------cCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 35889999988999999999999999987663
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=294.97 Aligned_cols=345 Identities=15% Similarity=0.104 Sum_probs=256.5
Q ss_pred CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 84 TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 84 ~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
++..+.|+.|.+++.+.+.. ..+....+..+++++.+++++|+++++.+++++ |+++++..++.++
T Consensus 5 ~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~-~~t~al~~~~~~~--- 70 (356)
T cd06451 5 PGPSNVPPRVLKAMNRPMLG----------HRSPEFLALMDEILEGLRYVFQTENGLTFLLSG-SGTGAMEAALSNL--- 70 (356)
T ss_pred CCCcCCCHHHHHHhCCCccC----------CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEec-CcHHHHHHHHHHh---
Confidence 34456778888888543311 123445678899999999999996554677884 5566788887776
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEec
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSA 241 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~ 241 (625)
+.+|++ |+++...|++. ...++..|++++.++.+.++.+|++++++++++ .++++|++++
T Consensus 71 ------------~~~g~~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~----~~~~~v~i~~ 132 (356)
T cd06451 71 ------------LEPGDK--VLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ----HDIKAVTLTH 132 (356)
T ss_pred ------------CCCCCE--EEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc----cCCCEEEEec
Confidence 467885 88877777763 345667899999999987788999999999973 3789999999
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS 321 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~ 321 (625)
++|+||.+.|+++|.++|+++|+++++|++|++|..++++... ++|+++.|+||||++|.|+|++++++++. +.+
T Consensus 133 ~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~l~~p~g~G~l~~~~~~~--~~~ 207 (356)
T cd06451 133 NETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEW---GVDVAYTGSQKALGAPPGLGPIAFSERAL--ERI 207 (356)
T ss_pred cCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcccccccc---CccEEEecCchhccCCCCcceeEECHHHH--HHH
Confidence 9999999999999999999999999999999998888877665 78999999999999999999999998873 222
Q ss_pred CC--cccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 322 PP--STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 322 ~p--~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+ ...++.. .. . ....+.. ..++..+++++.++. .++++++ ...|++.+.++.+.+++++.+.|.+
T Consensus 208 ~~~~~~~~~~~-~~-~----~~~~~~~--~~~~~~~t~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~ 277 (356)
T cd06451 208 KKKTKPKGFYF-DL-L----LLLKYWG--EGYSYPHTPPVNLLYALREALDLI--LEEGLENRWARHRRLAKALREGLEA 277 (356)
T ss_pred HhcCCCCceee-cH-H----HHHhhhc--ccCCCCCCChHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111100 00 0 0000000 112556777776543 4566665 3467888999999999999999988
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
+ +++++++. ..+.+++.+...+. +++..++++.|.+++||.+++|..|.
T Consensus 278 ~-g~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~~~~L~~~~gI~~~~g~~~~--------------- 326 (356)
T cd06451 278 L-GLKLLAKP-ELRSPTVTAVLVPE--------------GVDGDEVVRRLMKRYNIEIAGGLGPT--------------- 326 (356)
T ss_pred c-CCeeccCc-ccCCCceEEEECCC--------------CCCHHHHHHHHHHhCCEEEecccccc---------------
Confidence 7 88887653 33456665555432 23467899999765599999876543
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++|+|++.+++++|+++++++|++++
T Consensus 327 --------------~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 327 --------------AGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred --------------cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=295.37 Aligned_cols=354 Identities=12% Similarity=0.056 Sum_probs=259.9
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+||+.+.+.+.|..|.+++...+. ++.| .+..+.++++++|+.+++++|++++++|+|+.+++|.+++.
T Consensus 11 ~~~~~f~~Gp~~~~~~~v~~a~~~~~~---~~~h-----r~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~ 82 (378)
T PRK03080 11 PADPRFSSGPCKKRPGWQLEALADALL---GRSH-----RQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEM 82 (378)
T ss_pred CCCCCcCCCCcCCChHHHHHHHHhhhc---ccCc-----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHH
Confidence 447899999999888879999976542 2223 33567899999999999999996554788875577888999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-H-HHcCC-eEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-W-RQSLA-EVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~-~~~G~-~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
++..+ +++++. .|++ ..+|.+.... + +..|+ +++.++.+.++.+|+++ ++
T Consensus 83 ~~~~l---------------~~~~~~-~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~----i~------ 135 (378)
T PRK03080 83 ALWSL---------------LGARRV-DHLA-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSA----VD------ 135 (378)
T ss_pred HHHhc---------------CCCCcc-eEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhh----cC------
Confidence 88776 343222 3444 5788887654 3 45688 99999988777788775 32
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
.+++|+++|++|.||.+.|+++|++ |++|++++||++|++|+.++|+++ +|++++|+||||++|.|+|+++++
T Consensus 136 ~~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-----iD~~~~s~~K~l~~P~G~g~l~v~ 208 (378)
T PRK03080 136 FDRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-----LDVYTFSWQKVLGGEGGHGMAILS 208 (378)
T ss_pred CCCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-----CcEEEEehhhhCCCCCceEEEEEC
Confidence 2567999999999999999999999 889999999999999999999974 699999999999999999999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC---CChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG---GTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDV 386 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~---gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~ 386 (625)
++. ++.+.|...|+....+. +..........+++. +||++.++. .++++++ ... |.+.+.+|.+.
T Consensus 209 ~~~--~~~~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gG~e~i~~r~~~ 279 (378)
T PRK03080 209 PRA--VERLESYTPARPIPKFF-----RLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWA--NSIGGLDALIARTAA 279 (378)
T ss_pred HHH--HHhhhcccCCCCCchhh-----eeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 998 55566655544321111 001100112234444 456766653 4677777 455 89999999999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++++.|.++++++++.+.+..+. .+++|.+.... ... ..++...|.+ .||.++.|.++.
T Consensus 280 l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~------------~~~-~~~~~~~l~~-~~i~v~~g~~~~--- 342 (378)
T PRK03080 280 NASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQ------------AAV-DAAAVAKLLR-ENGAVDIEPYRD--- 342 (378)
T ss_pred HHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCch------------HHH-HHHHHHHHHH-cCCeeccccccC---
Confidence 99999999999987888764333344 57787653200 001 2235555645 488888765431
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+.+|+|+++|++++||++++++|+++++..
T Consensus 343 --------------------------~~~~vRis~~~~~t~~di~~l~~al~~~~~~~ 374 (378)
T PRK03080 343 --------------------------APNGLRIWCGPTVEPADVEALTPWLDWAFERL 374 (378)
T ss_pred --------------------------CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 13789999999999999999999999987654
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=287.09 Aligned_cols=388 Identities=12% Similarity=0.058 Sum_probs=268.8
Q ss_pred CCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCC--------CCcchHHHHHHHHHhhCCCCCCCCCCcc
Q 043646 43 HHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTA--------SGRSLRYIEDYIINNVLPFYGNTHTSDS 113 (625)
Q Consensus 43 ~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~--------~~~~p~~v~ea~~~~l~~~~~n~~~~~~ 113 (625)
..+|+. .+.++.++.+...+ |+|+++ ++++.+.+.+.+...+...++||+..
T Consensus 15 ~~~p~~~~~~~~~~~~~~~~i-----------------yld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s~-- 75 (431)
T TIGR01788 15 YRMPEEEMPPDAAYQLIHDEL-----------------SLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEY-- 75 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHh-----------------hhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCcccC--
Confidence 344555 67788888886554 566666 67777788999988886666787652
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEE--eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCC
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQA-DAIIF--CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYE 190 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vif--t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~ 190 (625)
+. ..++++++++++++++|+++. ++++| |++||.+++..+..+... .+.++...-....+.+|+++..+
T Consensus 76 --~~-~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~-----~~~~~~~~g~~~~~~~ii~s~~~ 147 (431)
T TIGR01788 76 --PQ-TAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWR-----WRKRMEAAGKPTDKPNLVMGSNV 147 (431)
T ss_pred --cc-HHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHH-----HHHHHHhcCCCCCCcEEEEcCcc
Confidence 23 348999999999999999732 24555 666666655554333210 00000000001123479999999
Q ss_pred CchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc------C
Q 043646 191 HHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY------G 263 (625)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~------g 263 (625)
|+|+.++.+..|++++.||++++ +.+|+++|+++|+ ++|.+|++++++|.||.++|+++|+++|+++ |
T Consensus 148 H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~-----~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~ 222 (431)
T TIGR01788 148 QVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVD-----ENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWD 222 (431)
T ss_pred hHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHh-----hCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCC
Confidence 99999999889999999999875 5899999999998 5789999999999999999999999999999 9
Q ss_pred CEEEEeccCcCCC-------ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceEEee
Q 043646 264 GFACFDFAASGPY-------VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTVNYV 334 (625)
Q Consensus 264 ~~vivD~A~~~g~-------~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v~~~ 334 (625)
+|+|+|+|++++. .+.+++. .++|++++|+|||+.+|.|+|++++++.......+ .+.+.++....
T Consensus 223 ~~~HvDaaq~g~~~p~~~~~~~~~~~~---~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~-- 297 (431)
T TIGR01788 223 IPIHVDAASGGFIAPFVYPDLEWDFRL---PRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPT-- 297 (431)
T ss_pred ceEEEecccHHHHHHHhCCCchhhcCC---CCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCC--
Confidence 9999999999544 4444442 48999999999998789999999998762101111 12233322100
Q ss_pred ccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcce
Q 043646 335 NAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAI 414 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i 414 (625)
...+ ++.+....+..=+.+......|++.+.++..++++++.++|+++|+++++++. .+.++
T Consensus 298 ---------------~t~~-~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~--~~~~i 359 (431)
T TIGR01788 298 ---------------FTLN-FSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG--SGIPL 359 (431)
T ss_pred ---------------ccee-cCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC--CCceE
Confidence 0011 11111111110011111145688899999999999999999999999999762 37899
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
++|...+.. ...++..++.+.|.+ .|+.+.. +..|. .++ ..-
T Consensus 360 V~Fr~~~~~-----------~~~~~~~~l~~~L~~-~G~~~~~---~~~p~-----~~~------------------~~~ 401 (431)
T TIGR01788 360 VAFKLKDDA-----------DPGYTLYDLSHRLRE-RGWIVPA---YTLPK-----NAE------------------DIV 401 (431)
T ss_pred EEEEeCCCC-----------CCCcCHHHHHHHHHH-CCCcccC---CCCCC-----ccC------------------CeE
Confidence 999986521 123456789999865 6886531 11110 000 125
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+|+++....+.+.++.|++.|++++.+.
T Consensus 402 ~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 402 VMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 68999988899999999999999987653
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=281.50 Aligned_cols=347 Identities=10% Similarity=0.026 Sum_probs=246.2
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
+|.|..+.+++.+.+...+. + .+..+.+.++++++.+++++|++++ +.|++| +|++.++..++..+
T Consensus 8 ~pgp~~~~~~v~~~~~~~~~--~-----~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t-~~~t~al~~~~~~l----- 74 (363)
T TIGR02326 8 TPGPLTTSRTVKEAMLFDWC--T-----WDSDYNIVVEQIRQQLLALATAEEGYTSVLLQ-GSGTFAVEAVIGSA----- 74 (363)
T ss_pred cCCCCCCCHHHHHHhCCCCC--C-----CChHHHHHHHHHHHHHHHHhCCCCCceEEEEc-CCCHHHHHHHHHhc-----
Confidence 44454555555555533221 1 1245677899999999999999764 368898 56677788887766
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchh-HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSN-LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+.++|+ +|++++.+|++. ...++..|++++.++.+.++.+|+++++++++++ +++++|++++++|
T Consensus 75 ----------~~~~~~-vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~~ 140 (363)
T TIGR02326 75 ----------VPKDGK-LLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAAD---PAITHIALVHCET 140 (363)
T ss_pred ----------CCCCCe-EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC---CCccEEEEEeecC
Confidence 356664 566667777664 3445678999999999888889999999999842 3578899999999
Q ss_pred ccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 245 ~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
+||.+.|+++|+++||++|+++++|++|++|..++++..+ ++|++++|+|||+++|.|+|+++++++.. ..+.+.
T Consensus 141 ~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~G~G~l~~~~~~~--~~~~~~ 215 (363)
T TIGR02326 141 TTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAEL---HIDYLISSANKCIQGVPGFGFVIARQAEL--AACKGN 215 (363)
T ss_pred CccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhc---CccEEEecCccccccCCcceEEEECHHHH--HHhhcC
Confidence 9999999999999999999999999999999999999887 89999999999998899999999998873 222221
Q ss_pred ccCCceEEeecccccccccccc--chhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLE--DIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~--~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
..+ ...+.... ..+.. ....+| |++...+. .++++.+. +..|++.+.++.+.+++++++.|.++ +
T Consensus 216 ~~~-~~~~~~~~-----~~~~~~~~~~~~f---t~~~~~~~al~~al~~l~-~~g~~~~~~~~~~~~~~~l~~~L~~~-g 284 (363)
T TIGR02326 216 ARS-LSLDLYDQ-----WRCMEDNHGKWRF---TSPTHVVHAFAQALLELE-KEGGVAARHQRYQQNQKTLVAGMRAL-G 284 (363)
T ss_pred CCc-eeecHHHH-----HHHHhccCCCCCC---CCcHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 110 00000000 00000 001122 33333332 34555542 33468889999999999999999887 7
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHH
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~ 480 (625)
++++.+. ..+.++++++..++. ..++...+.+.|. ++||.+++|..+.
T Consensus 285 ~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~~~v~~~L~-~~gi~v~~g~~~~------------------ 332 (363)
T TIGR02326 285 FEPLLDD-EIQSPIITSFYSPED------------PDYRFADFYQRLK-EQGFVIYPGKVSQ------------------ 332 (363)
T ss_pred CeeccCc-ccCCceEEEEECCCC------------CCCCHHHHHHHHH-HCCEEEECCcCCC------------------
Confidence 7777553 335666555554421 0123567888885 4699999775431
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.+++||++..+++.+|+++++++|++++
T Consensus 333 ------------~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 333 ------------VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred ------------CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3689999877899999999999999864
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-31 Score=278.14 Aligned_cols=336 Identities=16% Similarity=0.127 Sum_probs=249.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~ 157 (625)
.|+-+......+...++.+.......++||... +..+..+.++.+++++++++++|+++++ ..+||++||.+++..+.
T Consensus 24 ~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~-~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~ 102 (380)
T PRK02769 24 FNVGYPEAADFDYSALKRFFSFSINNCGDPYSK-SNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCY 102 (380)
T ss_pred cccCCCchhhcCHHHHHHHHHhhhccCCCcccc-CCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHH
Confidence 344444445454455666666665667888763 4456667889999999999999998653 25888666666665544
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
.++. +.+++ +|++++.+|+|+.++++..|.+.+.|+.+++|.+|+++|+++|+++ +.+|.+|
T Consensus 103 ~ar~--------------~~~~~--~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~--~~~t~lv 164 (380)
T PRK02769 103 LARE--------------LFPDG--TLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN--KNQPPII 164 (380)
T ss_pred HHHH--------------hCCCc--EEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC--CCCcEEE
Confidence 4332 24555 5999999999999999999999999999888999999999999852 3469999
Q ss_pred EEecccCccccccCHHHHHHHHHHcC---CEEEEeccCcCCCcc-------ccCCCCCCCCCcEEEEcCCCCCCCCCCce
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYG---GFACFDFAASGPYVK-------INLRSRNIDGYDAIFLATHKFLGGPGTPG 307 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g---~~vivD~A~~~g~~~-------id~~~~~~~~~D~v~~S~hK~lggp~g~G 307 (625)
++++++|+||.++|+++|+++|+++| +|+|||+|++++..+ +|+.. ++|++++|+|||+++|.|+|
T Consensus 165 v~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~----~vDsis~s~HK~~~~P~g~G 240 (380)
T PRK02769 165 FANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD----GIDSIAISGHKFIGSPMPCG 240 (380)
T ss_pred EEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC----CCCEEEECCcccCCCCCCcE
Confidence 99999999999999999999999998 699999999998885 44432 79999999999999999999
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+++++++. +..+.+. ..|... ......||.+...++ .+++.++ ...|++++.+++.
T Consensus 241 ~l~~r~~~--~~~~~~~------~~yl~~------------~d~t~~GSR~g~~~l~lw~aL~~l--g~~G~~~~~~~~~ 298 (380)
T PRK02769 241 IVLAKKKY--VERISVD------VDYIGS------------RDQTISGSRNGHTALLLWAAIRSL--GSKGLRQRVQHCL 298 (380)
T ss_pred EEEEehhh--hhhcccC------ccccCC------------CCCCccCCCCcHHHHHHHHHHHHH--CHHHHHHHHHHHH
Confidence 99999877 3333221 111111 011236777655443 3445554 6778999999999
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
++++++.++|++. +++++.++ ...+++|.... .++. + |-.+.+
T Consensus 299 ~la~~l~~~L~~~-g~~~~~~p---~~~~v~f~~~~-------------------~~~~----~--~w~l~~-------- 341 (380)
T PRK02769 299 DMAQYAVDRLQAN-GIPAWRNP---NSITVVFPCPS-------------------ERIW----K--KWHLAT-------- 341 (380)
T ss_pred HHHHHHHHHHHhC-CCEEEcCC---CceEEEEcCCC-------------------HHHH----h--CeeEcc--------
Confidence 9999999999875 88887653 45666664321 1221 2 333321
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||.+...++.+.+|.|++.|......
T Consensus 342 --------------------------~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 342 --------------------------SGNQAHIITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred --------------------------cCCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 1367999999999999999999999887654
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=280.32 Aligned_cols=359 Identities=14% Similarity=0.160 Sum_probs=255.6
Q ss_pred CCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHH-HHHHHHHHHhCCCCCCcEEEe---CChHHHHHHHHHHH
Q 043646 86 SGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVH-EASNYIKRCLGGGQADAIIFC---GAGTTAAIKRLQEV 159 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~-~~~~~ia~~~g~~~~~~vift---~sGttaal~~l~~~ 159 (625)
-..+++.|++++...+...| +||++. +..|....+.++ .+++.+++++|++++ ++.++ .+|+.+ ...++.+
T Consensus 43 en~~s~~v~~~~~~~l~~~y~~g~p~s~-~~~g~~~~~~iE~~ar~~~a~lf~a~~~-~~~~~~~~~sgt~a-n~~v~~a 119 (452)
T PTZ00094 43 ENFTSRAVLECLGSCFTNKYAEGLPGNR-YYGGNEVVDKIENLCQKRALEAFGLDPE-EWGVNVQPYSGSPA-NFAVYTA 119 (452)
T ss_pred cccCCHHHHHHhcchhhccccCCCCCcc-ccccchHHHHHHHHHHHHHHHHhCCCcc-cceeecCCCchHHH-HHHHHHH
Confidence 34567789999998887777 899874 556766667666 489999999999776 56565 345544 4444454
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc----------CCeEEEEecCCCCCCCHHHHHHHHHHhh
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS----------LAEVVEIGLDDNGLLDIEALRSQLELYK 229 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~----------G~~vv~v~~~~~~~ld~~~L~~~l~~~~ 229 (625)
+ +++||. |++++.+|.++...+... +.++..++++.+|.+|+++|+++++.
T Consensus 120 l---------------~~~gd~--Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~-- 180 (452)
T PTZ00094 120 L---------------LQPHDR--IMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA-- 180 (452)
T ss_pred h---------------cCCCCE--EEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH--
Confidence 4 467885 999999999987665321 13445566777799999999999974
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
.++++|++. ++.+|...|+++|+++||++|+++++|++|++|.++.++......++|++++|+||||+||.| |++
T Consensus 181 --~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l 255 (452)
T PTZ00094 181 --FRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLI 255 (452)
T ss_pred --hCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEE
Confidence 367777664 346999999999999999999999999999999998877554334799999999999999998 888
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++... ..+.+... . ..+ . .+ .|+++...++. ++++++ ...+.+.+.++...+
T Consensus 256 ~~~~~~~--~~l~~~~~--~------------~~~----p-~~-~G~~~~~~iaal~~al~~~--~~~~~~~~~~~i~~l 311 (452)
T PTZ00094 256 FYRKKVK--PDIENKIN--E------------AVF----P-GL-QGGPHNHQIAAIAVQLKEV--QSPEWKEYAKQVLKN 311 (452)
T ss_pred EEecccc--hHHHHhhc--c------------ccC----C-CC-CCCchHHHHHHHHHHHHHH--hChhHHHHHHHHHHH
Confidence 8887651 11111000 0 000 0 11 35665555543 344443 345777889999999
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeee-ecCCCCCchhh
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA-RGGCACAGPYG 466 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v-~~G~~~~~~~~ 466 (625)
++++.+.|.+. |+++..+....+..++.|... ++++..+...| +++||.+ +.|..|+.. .
T Consensus 312 ~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~----------------~~~~~~~~~~L-~~~gI~vs~~~~p~~~~-~ 372 (452)
T PTZ00094 312 AKALAAALEKR-GYDLVTGGTDNHLVLVDLRPF----------------GITGSKMEKLL-DAVNISVNKNTIPGDKS-A 372 (452)
T ss_pred HHHHHHHHHhC-CcEEecCCCCCceEeecCCcC----------------CCCHHHHHHHH-HHCCcEEecccCCCCCc-C
Confidence 99999999875 888876432223333333221 34567788888 5589999 555555411 1
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHhhhhcccCccccccccccc
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS----NEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWC 540 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t----~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~~w~ 540 (625)
..++++|+|++++++ ++|+++++++|++++.....+.+.| ++++.+|.
T Consensus 373 ------------------------~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~ 424 (452)
T PTZ00094 373 ------------------------LNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQV--GKKLVDFK 424 (452)
T ss_pred ------------------------CCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhhhc--ccchhhhh
Confidence 135899999999987 9999999999999998876666666 66665554
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=276.76 Aligned_cols=339 Identities=15% Similarity=0.147 Sum_probs=237.6
Q ss_pred CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhh---HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 043646 84 TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVG---QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 84 ~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~---~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (625)
++..+.|+.|.+++.+.+..+. |++.+.+..+ ..+.+.++++|+.+++++|++.+++|+||.+++|.+++.++..+
T Consensus 5 pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 5 AGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 3446788999999999886654 8887666666 56779999999999999998555589999555999999998887
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCC-C-HHHHHHHHHHhhhCCCCeEEE
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLL-D-IEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~l-d-~~~L~~~l~~~~~~~~~~lv~ 238 (625)
-. ..++++ +|++.+..|.+. ...+..|++++.++.+.++.+ + ++..+..++ +++++|+
T Consensus 84 ~~------------~~~~~~--~i~~g~~~~~~~-~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~lV~ 143 (355)
T cd00611 84 LG------------DKGTAD--YVVTGAWSAKAA-KEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLA-----PDAAYVH 143 (355)
T ss_pred CC------------CCCeEE--EEECCHHHHHHH-HHHHhcCCCcEEEecccccCCCCCCCHhhcCCC-----CCCCEEE
Confidence 20 012444 466666666553 244667999999998654322 4 222223333 6899999
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
++|++|.||...+ ++++.||++++||++|++|+.++|++++ |++++|.||+|| |.|+|++++++++ +
T Consensus 144 ~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~-----~~~~ss~~K~lG-P~G~g~l~~~~~~--~ 210 (355)
T cd00611 144 YCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKF-----GVIYAGAQKNLG-PAGVTVVIVRKDL--L 210 (355)
T ss_pred EeCCcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHh-----CEEEeecccccC-CCceEEEEECHHH--H
Confidence 9999999999833 4455699999999999999999999876 456677999986 9999999999998 4
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHhh
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~l~~~L 395 (625)
..+.|.... .. .+..........|||++.+++ .++++++ ..+ |++.+.+|++.+++++++.|
T Consensus 211 ~~~~~~~~~--~~-----------~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l--~~~gg~e~i~~~~~~l~~~l~~~l 275 (355)
T cd00611 211 GKARKITPS--ML-----------NYKTHADNNSLYNTPPTFAIYMMGLVLKWL--KEQGGVEAMEKRNRQKAQLLYDTI 275 (355)
T ss_pred hhcccCCCC--cc-----------cHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHH
Confidence 444443211 00 000000112236899988875 4677777 566 79999999999999999999
Q ss_pred CCCCcEEEeCCCC-CCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 396 LPNQNIQVLGNTS-VKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 396 ~~l~gv~v~~~~~-~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.++||+.. .+.+ ..|.+ +++|.+... .+. .++. +|.++.|.+ . +.++.
T Consensus 276 ~~~~gl~~-~~~~~~~rs~~vvsf~~~~~--------------~l~-~~~~-------~~~~r~G~~-~-~~~~~----- 325 (355)
T cd00611 276 DNSNGFYR-GPVDKRARSRMNVPFRLGKE--------------ELE-KEFL-------KEAEAAGMI-G-LKGHR----- 325 (355)
T ss_pred HhCccccc-cCCCHHHcCceEEEEEcCCh--------------hhh-HHHH-------HHHHHCCCc-c-cCCCc-----
Confidence 99988521 2211 23664 588886420 000 1121 344444442 2 21221
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..|.+|+|+++|+|++|||+|+++|+++
T Consensus 326 ------------------~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 326 ------------------SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred ------------------ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 1378999999999999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=269.80 Aligned_cols=422 Identities=11% Similarity=0.030 Sum_probs=277.0
Q ss_pred cccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCC
Q 043646 33 RQTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTS 111 (625)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~ 111 (625)
.+..+.+++..++|+. .+.++.++++++.+......+.+| +.+.|+.. +..+..++..+.... -|+...
T Consensus 91 ~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP---~f~a~~~~---~~~~~~~lgd~l~sa----~n~~~~ 160 (539)
T PLN02590 91 QPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSP---SYFAYYAS---STSVAGFLGEMLNAG----LSVVGF 160 (539)
T ss_pred ChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCC---CeeEeccC---CCcHHHHHHHHHHHh----cccccC
Confidence 3455666677777776 788899999999887666666665 65666554 344444443333222 244444
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhCCCCC------CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEE
Q 043646 112 DSYVGQRMTKMVHEASNYIKRCLGGGQA------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVF 185 (625)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~ia~~~g~~~~------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vl 185 (625)
.+..++..+++..++.+|+++++|.+.. ...+|+++||.++|..+..++....+ .. +.....+.+|+
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~----~~---g~~~~~~~vvy 233 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILK----KV---GKTLLPQLVVY 233 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHh----hh---cccCCCCEEEE
Confidence 4667788899999999999999999753 24677878888888887776532110 00 01111245788
Q ss_pred EcCCCCchhHHHHHHcCC---eEEEEecCC--CCCCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccCHHHHHHHH
Q 043646 186 LGPYEHHSNLLSWRQSLA---EVVEIGLDD--NGLLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSDTRSIARLL 259 (625)
Q Consensus 186 v~~~~h~s~~~~~~~~G~---~vv~v~~~~--~~~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~l~~I~~la 259 (625)
++...|+|+.++++..|+ +++.||++. ++.+|+++|+++|.++... ..|.+|+.+..++.||.++|+++|+++|
T Consensus 234 ~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~ 313 (539)
T PLN02590 234 GSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIA 313 (539)
T ss_pred ecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHH
Confidence 899999999999999887 589999984 5799999999999865433 3588999999999999999999999999
Q ss_pred HHcCCEEEEeccCcCCCcccc-CCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC--CCCcccCCceEEee
Q 043646 260 HQYGGFACFDFAASGPYVKIN-LRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS--SPPSTCGGGTVNYV 334 (625)
Q Consensus 260 ~~~g~~vivD~A~~~g~~~id-~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~--~~p~~~ggg~v~~~ 334 (625)
++||+|+|||+|++......+ .+.+ +.+.+|++++++|||++.|.+||++++++.....+. ..+.+..... ..
T Consensus 314 ~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~-~~- 391 (539)
T PLN02590 314 KKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKV-SK- 391 (539)
T ss_pred HHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcc-cc-
Confidence 999999999999876553221 2111 345789999999999999999999999975311111 1111110000 00
Q ss_pred ccccccccccccchhhhhcCCChhHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc
Q 043646 335 NAFDEKDTLYLEDIEERENGGTPQIVQ-MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA 413 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~ 413 (625)
......+. ....+.+.. +-+ .+-.++... ...|+..+.++..++++++.+.|++.|+++++.+. ..+
T Consensus 392 ---~~~~~d~~---d~~i~lsRr-~raLklW~~lr~~--G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~---~l~ 459 (539)
T PLN02590 392 ---KDTVVNYK---DWQISLSRR-FRSLKLWMVLRLY--GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTR---YFS 459 (539)
T ss_pred ---cccCCCcc---ccCCCCCCc-hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---ceE
Confidence 00000000 001111111 111 111222222 44567788888889999999999999999999864 689
Q ss_pred eEEEEeccCCCCCCccccccCCCCCC--hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLH--GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~--~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
+++|...+....+ ...+ ...+.+.|++.-.+.+. ... + .
T Consensus 460 iVcFr~~~~~~~~---------~~~~~ln~~l~~~l~~~G~~~vs-~t~---------~------------------~-- 500 (539)
T PLN02590 460 LVCFRLAPVDGDE---------DQCNERNRELLAAVNSTGKIFIS-HTA---------L------------------S-- 500 (539)
T ss_pred EEEEEecCCCCCH---------HHHHHHHHHHHHHHHhCCCEEEE-eeE---------E------------------C--
Confidence 9999987632100 0000 12344444432222222 110 0 1
Q ss_pred CCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 492 KPGWTRITF-PYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 492 ~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
...++|+++ .+.++++||+.+++.|.+.+.+..
T Consensus 501 g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 501 GKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 136899998 688999999999999999876653
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=271.88 Aligned_cols=417 Identities=10% Similarity=0.050 Sum_probs=272.5
Q ss_pred ccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 34 QTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
+.++.+.++...|.. .+.++.++.+.+.+......+.+| +.+.|+..+. .+..++..+..... |+....
T Consensus 44 p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP---~f~~~~~~~~---~~~~~lad~l~~~~----n~~~~~ 113 (490)
T PLN02880 44 PGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSP---NYFAYYPSNS---SVAGFLGEMLSAGL----NIVGFS 113 (490)
T ss_pred HHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCC---CeeEeccCCC---cHHHHHHHHHHHhh----ccCCcc
Confidence 344555566665555 788999999999887665556665 5566655433 33344433333221 433333
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCC------CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQA------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL 186 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv 186 (625)
+..++..++++.++.+|+++++|.+.+ ...+||++||.++|..+..++....+ + .+.....+.+|++
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~----~---~g~~~~~~~vv~~ 186 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLR----K---VGKNALEKLVVYA 186 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHH----H---hcccccCCeEEEE
Confidence 556677889999999999999999753 13678878899988888777632110 0 0111123457888
Q ss_pred cCCCCchhHHHHHHcCC---eEEEEecCC--CCCCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccCHHHHHHHHH
Q 043646 187 GPYEHHSNLLSWRQSLA---EVVEIGLDD--NGLLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSDTRSIARLLH 260 (625)
Q Consensus 187 ~~~~h~s~~~~~~~~G~---~vv~v~~~~--~~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~l~~I~~la~ 260 (625)
+...|+|+.++++..|. .++.||++. ++.+|+++|+++|.++.. +..|.+|+.+.+++.||.++|+++|+++|+
T Consensus 187 S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~ 266 (490)
T PLN02880 187 SDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAK 266 (490)
T ss_pred cCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHH
Confidence 99999999999999988 488999975 568999999999986543 335889999999999999999999999999
Q ss_pred HcCCEEEEeccCcCCCccc-----cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeec
Q 043646 261 QYGGFACFDFAASGPYVKI-----NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVN 335 (625)
Q Consensus 261 ~~g~~vivD~A~~~g~~~i-----d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~ 335 (625)
+||+|+|||+|++++.... .++. .+++|++++++|||++.|.++|++++++.....+ +....+..+...
T Consensus 267 ~~~iwlHVDaA~gg~~~~~~~~~~~l~g--ie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~---~~~~~~~Yl~~~- 340 (490)
T PLN02880 267 SNGMWFHVDAAYAGSACICPEYRHYIDG--VEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQ---SLSTNPEFLKNK- 340 (490)
T ss_pred HcCCEEEEehhhHHHHHhCHHHHHHhcC--chhcCEEEECchhhcCCCccEEEEEEeCHHHHHH---HHccCHHHhcCc-
Confidence 9999999999988775432 1222 2478999999999999999999999996431111 111111000000
Q ss_pred cccccccccccchhhhhcCCChhHHHHHHHHHHHHH-HhhcCHHHHHHHHH---HHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWV-KEYIGYEVIKKQED---VYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~-~~~~g~~~i~~~~~---~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
........+......+.|.. ..++.+|. ....|.+.+.+++. ++++++.+.|++.++++++.+. .
T Consensus 341 --~~~~~~~~~~~~~~i~~~rr------~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~---~ 409 (490)
T PLN02880 341 --ASQANSVVDYKDWQIPLGRR------FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPR---I 409 (490)
T ss_pred --cccccCCCChhccCcCCCCc------ccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---c
Confidence 00000000000000011111 01244432 23456666666665 9999999999999999999874 5
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCC--hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLH--GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~--~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
.++++|...+..... ...+ ...+.+.|++...+.+......
T Consensus 410 ~~iv~Fr~~~~~~~~---------~~~~~~n~~l~~~l~~~g~~~v~~t~~~---------------------------- 452 (490)
T PLN02880 410 FSLVCFRLVPPKNNE---------DNGNKLNHDLLDAVNSSGKIFISHTVLS---------------------------- 452 (490)
T ss_pred eEEEEEEEeCCCCCh---------hhHHHHHHHHHHHHHhCCCEEEEEEEEC----------------------------
Confidence 789999886531000 0000 1234555555455555422111
Q ss_pred CCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhh
Q 043646 490 GVKPGWTRITFP-YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 490 g~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++|++++ +.++++|++.+++.|+++..+.
T Consensus 453 --g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 453 --GKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred --CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2478999996 5556799999999999987764
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=267.94 Aligned_cols=348 Identities=16% Similarity=0.191 Sum_probs=240.8
Q ss_pred CCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchH-HHHHHHHHhhCCCCCCCCCCcchhhHHH
Q 043646 42 DHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLR-YIEDYIINNVLPFYGNTHTSDSYVGQRM 119 (625)
Q Consensus 42 ~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~-~v~ea~~~~l~~~~~n~~~~~~~~~~~~ 119 (625)
...+|.. .+.++.++.+.+.+......+.+| +.+.|+..+ .++.- .+.+ +...+ |+....+..++..
T Consensus 59 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP---~f~g~~~~~--~p~~~~~l~~-l~~~l-----N~n~~~~~~spa~ 127 (522)
T TIGR03799 59 SAEIPEQPTFVSEHTQFLLDKLVAHSVHTASP---SFIGHMTSA--LPYFMLPLSK-LMVAL-----NQNLVKIETSKAF 127 (522)
T ss_pred ccCCCCCCCChHHHHHHHHHHHHcCCCCCCCC---CeEEeccCC--CchHHHHHHH-HHHHh-----cCCcceeecCcch
Confidence 4455555 677888999888886666666666 667787774 12111 1222 33322 4433346678888
Q ss_pred HHHHHHHHHHHHHHhCCCC------------CCcEEEeCChHHHHHHHHHHHhcccccc------hhhhhhhhccC--CC
Q 043646 120 TKMVHEASNYIKRCLGGGQ------------ADAIIFCGAGTTAAIKRLQEVMGITVPS------IMRDKLITSLR--DE 179 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~------------~~~vift~sGttaal~~l~~~l~~~~~~------~~~~~~~~~l~--~g 179 (625)
+++..++.+|++++++..+ ....+||++||.++|..+..++....+. ..++.+...+. ..
T Consensus 128 t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~ 207 (522)
T TIGR03799 128 TPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGY 207 (522)
T ss_pred HHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccC
Confidence 9999999999999985311 1146788889999999988877532110 00011000000 01
Q ss_pred CceEEEEcCCCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHH
Q 043646 180 ERWVVFLGPYEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSI 255 (625)
Q Consensus 180 d~~~Vlv~~~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I 255 (625)
++.+|+++..+|+|+.++.+..|. +++.||++.++.+|+++|+++|.+....+ ++.+|+.++.++.||.++|+++|
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eI 287 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEM 287 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHH
Confidence 245799999999999999888887 79999999999999999999997543222 34455555778899999999999
Q ss_pred HHHHHHcCCEEEEeccCcCCCcccc-----CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCC---cccC
Q 043646 256 ARLLHQYGGFACFDFAASGPYVKIN-----LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPP---STCG 327 (625)
Q Consensus 256 ~~la~~~g~~vivD~A~~~g~~~id-----~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p---~~~g 327 (625)
+++|+++|+|+|||+|++++....+ ++. .+++|++++++|||+++|.|+|++++++... ++.+.+ +...
T Consensus 288 a~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~g--le~aDSit~d~HK~l~~P~g~G~llvr~~~~-~~~~~~~~~Yl~~ 364 (522)
T TIGR03799 288 ADIAQELGCHFHVDAAWGGATLLSNTYRHLLKG--IERADSVTIDAHKQLYVPMGAGMVLFKDPAL-MSAIEHHAEYILR 364 (522)
T ss_pred HHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcC--chhCCEEEEChhhcCCcCcccEEEEEeCHHH-HHHhccCcchhcC
Confidence 9999999999999999998765544 232 2478999999999999999999999987542 222222 1100
Q ss_pred CceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCC
Q 043646 328 GGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNT 407 (625)
Q Consensus 328 gg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~ 407 (625)
.+. .. .....++.+.+...-.+.+++.++ ...|++.+.++...+++++.+.|++.|+++++.+.
T Consensus 365 ~~~-----------~d---~~~~~legsR~~~al~lw~aL~~l--G~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p 428 (522)
T TIGR03799 365 KGS-----------KD---LGSHTLEGSRPGMAMLVYAGLHII--GRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP 428 (522)
T ss_pred CCC-----------Cc---cccceeecCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC
Confidence 000 00 002334544443322234556655 67799999999999999999999999999999864
Q ss_pred CCCCcceEEEEeccC
Q 043646 408 SVKRQAILSFLVYST 422 (625)
Q Consensus 408 ~~~~~~i~~f~~~~~ 422 (625)
..++++|...+.
T Consensus 429 ---~l~iv~Fr~~p~ 440 (522)
T TIGR03799 429 ---ELCLLTYRYVPE 440 (522)
T ss_pred ---CccEEEEEEeCh
Confidence 678999998664
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=267.68 Aligned_cols=315 Identities=17% Similarity=0.123 Sum_probs=226.8
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEE
Q 043646 107 NTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVF 185 (625)
Q Consensus 107 n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vl 185 (625)
|++...|..+....++++++++++++++|.+ .+.+++||+ |++.++..++.++...... +.-..+..++++.+|+
T Consensus 24 n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~-ggt~a~~~al~~~~~~~~~---~~~~~~~~~~~~~~v~ 99 (345)
T cd06450 24 NAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTS-GGSESNLLALLAARDRARK---RLKAGGGRGIDKLVIV 99 (345)
T ss_pred CCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeC-ChhHHHHHHHHHHHHHhhh---hhhcccccccCCeEEE
Confidence 4443335566778899999999999999996 333789995 5555555555444110000 0000001244555799
Q ss_pred EcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccCHHHHHHHHHHcCC
Q 043646 186 LGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGG 264 (625)
Q Consensus 186 v~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~ 264 (625)
+++.+|+++..+++..|++++.+++++++.+|+++|+++++++.. +.++++|++++++|+||.+.|+++|+++|+++|+
T Consensus 100 ~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~ 179 (345)
T cd06450 100 CSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDL 179 (345)
T ss_pred EcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCC
Confidence 999999999888888899999999988889999999999974221 2268899999999999999999999999999999
Q ss_pred EEEEeccCcCCCccccCCC---CCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccc
Q 043646 265 FACFDFAASGPYVKINLRS---RNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 265 ~vivD~A~~~g~~~id~~~---~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (625)
++|+|+|++.+..+.+... ....++|++++|+|||+++|.|+|+++++ .
T Consensus 180 ~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~--~-------------------------- 231 (345)
T cd06450 180 WLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR--A-------------------------- 231 (345)
T ss_pred eEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH--H--------------------------
Confidence 9999999998776543221 11237899999999999989988877654 1
Q ss_pred cccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 342 TLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
....+++.++ ...|++.+.++..++++++.+.|.++++++++.+. +.++++|...+
T Consensus 232 -------------------~~~~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~iv~f~~~~ 287 (345)
T cd06450 232 -------------------LKLWATLRRF--GRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEP---NLSLVCFRLKP 287 (345)
T ss_pred -------------------HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---ceeEEEEEECC
Confidence 0112334443 44578888999999999999999999999887643 46788887654
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~ 501 (625)
.. ...++..++.+.|.+ +|+.+.++..+. .++++||+++
T Consensus 288 ~~-----------~~~~~~~~i~~~L~~-~g~~~~~~~~~~-----------------------------~~~~lRis~~ 326 (345)
T cd06450 288 SV-----------KLDELNYDLSDRLNE-RGGWHVPATTLG-----------------------------GPNVLRFVVT 326 (345)
T ss_pred cc-----------hhhHHHHHHHHHHHh-cCCEEEEeeEEC-----------------------------CeEEEEEEec
Confidence 10 011235678888865 555444332111 1478999998
Q ss_pred CC-CCHHHHHHHHHHHHH
Q 043646 502 YY-MSNEEFEFILAALEF 518 (625)
Q Consensus 502 ~~-~t~edid~ll~aL~~ 518 (625)
.+ +|++|+++++++|++
T Consensus 327 ~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 327 NPLTTRDDADALLEDIER 344 (345)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 76 599999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=254.38 Aligned_cols=346 Identities=16% Similarity=0.153 Sum_probs=264.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.+.++.|++++...+. ++.+..+..++.++.+.++..++++..+.++++|+|+.+ +...+..+
T Consensus 14 ~~v~~~V~~am~~~~~----------~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~a-mEAav~sl------ 76 (383)
T COG0075 14 VPVPPRVLLAMARPMV----------GHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLA-MEAAVASL------ 76 (383)
T ss_pred CCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHH-HHHHHHhc------
Confidence 5567778777754331 235677899999999999999999865467777666555 55555554
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
++|||+ |++.....++.. ..++..|++++.+...+...+|+++++++|+++ +..++|.++|+.+
T Consensus 77 ---------~~pgdk--VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~---~~~~~V~~vH~ET 142 (383)
T COG0075 77 ---------VEPGDK--VLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD---PDIKAVAVVHNET 142 (383)
T ss_pred ---------cCCCCe--EEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC---CCccEEEEEeccC
Confidence 589997 555444444433 235667999999999888889999999999953 5788999999999
Q ss_pred ccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 245 ~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
+||+..|+++|+++|++||++++||+++++|..++++++| ++|+++.+.+|++++|.|+|++.++++... .+...
T Consensus 143 STGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w---giDv~itgSQK~l~~PPGla~v~~S~~a~e--~~~~~ 217 (383)
T COG0075 143 STGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW---GIDVAITGSQKALGAPPGLAFVAVSERALE--AIEER 217 (383)
T ss_pred cccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhc---CccEEEecCchhccCCCccceeEECHHHHH--HHhcC
Confidence 9999999999999999999999999999999999999999 999999999999999999999999998732 22111
Q ss_pred ccCCceEEeeccccccccccccchhh-hhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEE-RENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~-~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
... +|+.+...+....+. +....||++..+. ..+++.+ ...|.+++.+|.+.+++++++.+.++ |+
T Consensus 218 ~~~--------~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~al-Gl 286 (383)
T COG0075 218 KHP--------SFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLI--LEEGLEARIARHRRLAEALRAGLEAL-GL 286 (383)
T ss_pred CCC--------ceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 100 112233333333333 4566788877664 4566666 56789999999999999999999998 99
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 402 QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 402 ~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
+++. .+..++++++-...|. +++..++...+.+++||.+.+|...
T Consensus 287 ~~~~-~~~~~s~tvta~~~P~--------------g~~~~~~~~~~~~~~g~~i~gg~~~-------------------- 331 (383)
T COG0075 287 ELFA-DPERRSPTVTAIKVPE--------------GVDDKKVRRALLKEYGVEIAGGQGP-------------------- 331 (383)
T ss_pred cccc-CcccCCCceEEEECCC--------------CCCcHHHHHHHHHhCCEEecccccc--------------------
Confidence 9988 3456777776666553 2344455556778899999766421
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++...+||+.--+.+.+|+...+.+|+.++.+.
T Consensus 332 ---------l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~ 364 (383)
T COG0075 332 ---------LKGKIFRIGHMGNVRPEDVLAALAALEAALREL 364 (383)
T ss_pred ---------cCccEEEEecCccCCHHHHHHHHHHHHHHHHHc
Confidence 135789999755899999999999999998775
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=258.84 Aligned_cols=324 Identities=15% Similarity=0.119 Sum_probs=233.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhh
Q 043646 92 YIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRD 170 (625)
Q Consensus 92 ~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (625)
.+++++...+...++||.+. +..+..+.++++++++++++++|+++++ ..+||++||.+++..+..+..
T Consensus 38 ~~~~~~~~~~~~~~gnP~s~-~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~--------- 107 (374)
T PLN03032 38 GELSQLMKYSINNLGDPFIE-SNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGRE--------- 107 (374)
T ss_pred HHHHHHHHhcccCCCCCccc-CCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHH---------
Confidence 46777888887778999884 5677889999999999999999998763 248997777777766654432
Q ss_pred hhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc
Q 043646 171 KLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS 250 (625)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~ 250 (625)
..+++ +|+++..+|+|+.++++..|.+++.||++.+|.+|+++|+++|+++ ..+|.+|++++++|+||.++
T Consensus 108 -----~~~~~--~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~--~~~~~lvv~tagtt~tG~id 178 (374)
T PLN03032 108 -----VFPDG--ILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKN--RDKPAILNVNIGTTVKGAVD 178 (374)
T ss_pred -----hCCCc--EEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHc--CCCCEEEEEEecCcCCccCC
Confidence 12333 6999999999999999999999999999999999999999999842 13688999999999999999
Q ss_pred CHHHHHHHHHHcC-----CEEEEeccCcCCCccccCCC--C-CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCC
Q 043646 251 DTRSIARLLHQYG-----GFACFDFAASGPYVKINLRS--R-NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSP 322 (625)
Q Consensus 251 ~l~~I~~la~~~g-----~~vivD~A~~~g~~~id~~~--~-~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~ 322 (625)
|+++|+++|+++| +|+|+|+|++++..++.... . ...++|++++|+|||+|.|.|+|++++++.. +..+.
T Consensus 179 pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~--~~~~~ 256 (374)
T PLN03032 179 DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALS 256 (374)
T ss_pred CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh--hHhhc
Confidence 9999999999996 59999999998887752210 0 0126999999999999889999999999876 22221
Q ss_pred CcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 323 PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
.. ..| +...... ..|+.+-...+ -+.+... ...|+..+.+++.++++++.++|++. +
T Consensus 257 ~~------~~Y-----------l~~~d~t-i~gSR~g~~~l~~w~~l~~~--G~~g~~~~~~~~~~~a~~l~~~l~~~-~ 315 (374)
T PLN03032 257 QN------VEY-----------LNSRDAT-IMGSRNGHAPLYLWYTLRRK--GYRGIKRDVQHCMRNAHYLKDRLTEA-G 315 (374)
T ss_pred cC------Ccc-----------cCCCCCc-ccCCCchHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 00 011 1000001 12333321111 1222222 45567788899999999999999886 6
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHH
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~ 480 (625)
++++.++ ...+++|..... .. +.+ |-.+.+
T Consensus 316 ~~~~~~p---~~~~V~f~~~~~------------------~~----~~~--~w~l~~----------------------- 345 (374)
T PLN03032 316 LTCRLNE---LSSTVVFERPMD------------------EA----FIK--KWQLAC----------------------- 345 (374)
T ss_pred CcEEECC---CceEEEEcCCCc------------------Hh----Hhh--eeeecc-----------------------
Confidence 6665442 344555443210 11 212 333321
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
.++++||.+.+.++.+.+|.|++.|++
T Consensus 346 -----------~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 346 -----------EGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -----------cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 135799999988999999999998875
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=262.44 Aligned_cols=325 Identities=13% Similarity=0.071 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh--
Q 043646 118 RMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN-- 194 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-- 194 (625)
.+.+.++++++.+++++|++++ +.+++++ +++.++..++..+ +.++++ |++....++..
T Consensus 34 ~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~-~gt~~l~~~~~~l---------------~~~~~~--vlv~~~~~~~~~~ 95 (368)
T PRK13479 34 DFNALTASVRAKLVAIATGEEGYTCVPLQG-SGTFSVEAAIGSL---------------VPRDGK--VLVPDNGAYGARI 95 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcC-CcHHHHHHHHHhc---------------cCCCCe--EEEEeCCchHHHH
Confidence 3456889999999999999754 3577884 5555677776665 356665 55544444333
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 195 LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
....+..|++++.++.+.++.+|++++++++++. +++++|.+++++|+||.+.|+++|+++||++|+++++|+++++
T Consensus 96 ~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~ 172 (368)
T PRK13479 96 AQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAAD---PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSF 172 (368)
T ss_pred HHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhC---CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEccccc
Confidence 2445668999999999877789999999998742 4678999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
|..++++..+ ++|++++|+|||+++|.|+|++++++++ ++.+.+.... ..++.... ..........++
T Consensus 173 g~~~~~~~~~---~~d~~v~s~~K~l~g~~G~G~l~~~~~~--~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~-- 240 (368)
T PRK13479 173 GAIPIDIAEL---GIDALISSANKCIEGVPGFGFVIARRSE--LEACKGNSRS-LSLDLYDQ----WAYMEKTGQWRF-- 240 (368)
T ss_pred CCcccccccc---CceEEEecCccccccCCCceEEEECHHH--HHHhhcCCCC-eeecHHHH----HhhhcccCCCCC--
Confidence 9888888877 7899999999999889889999999887 3333221110 00000000 000000011112
Q ss_pred CChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcce-EEEEeccCCCCCCcccc
Q 043646 355 GTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAI-LSFLVYSTTNSSPENMK 431 (625)
Q Consensus 355 gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i-~~f~~~~~~~~~~~~~~ 431 (625)
|+++..++ .++++.+. +..+.+++.++...+++++++.|.++ |++++.+. ..+.+. ++|.. +..
T Consensus 241 -t~~~~~~~~l~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~-~~~-------- 307 (368)
T PRK13479 241 -TPPTHVVAAFYQALLELE-EEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDA-EIQSPIIVTFHA-PAD-------- 307 (368)
T ss_pred -CCcHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCc-hhcCceEEEEEC-CCC--------
Confidence 55554433 45555542 33467888889999999999999887 77776542 223444 44443 221
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
..++..++.+.|.+ .||.+++|..+. .+++||+...+++++|+++
T Consensus 308 ----~~~~~~~l~~~L~~-~gi~v~~g~~~~------------------------------~~~iRis~~~~~t~edi~~ 352 (368)
T PRK13479 308 ----PAYDFKEFYERLKE-QGFVIYPGKLTQ------------------------------VDTFRIGCIGDVDAADIRR 352 (368)
T ss_pred ----CCcCHHHHHHHHHH-CCEEEecCCCCC------------------------------CCEEEEecCCCCCHHHHHH
Confidence 12345678888855 699998763221 3679999877899999999
Q ss_pred HHHHHHHHHHhh
Q 043646 512 ILAALEFIAAYG 523 (625)
Q Consensus 512 ll~aL~~~~~~~ 523 (625)
++++|++++.+.
T Consensus 353 ~l~~L~~~l~~~ 364 (368)
T PRK13479 353 LVAAIAEALYWM 364 (368)
T ss_pred HHHHHHHHHHHc
Confidence 999999987653
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=241.97 Aligned_cols=381 Identities=19% Similarity=0.224 Sum_probs=280.9
Q ss_pred ChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcch-hhHHHHHHHHHHHH
Q 043646 50 PSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSY-VGQRMTKMVHEASN 128 (625)
Q Consensus 50 ~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~-~~~~~~~~~~~~~~ 128 (625)
+..+-+..+|..|..- .+.+|||.++.|..|+.+.+...+.....|+.-....+. ....+.++-+.+-.
T Consensus 14 Da~dpl~~lr~~f~lp----------~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgd 83 (407)
T COG3844 14 DAADPLAKLRDRFALP----------GGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGD 83 (407)
T ss_pred cccCchhhhHhhccCC----------CCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHH
Confidence 3445667777777433 579999999999998665555544443222221111111 11234566777889
Q ss_pred HHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEE
Q 043646 129 YIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEI 208 (625)
Q Consensus 129 ~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v 208 (625)
+++.++|+.++ +|+.+ .+++.+|+.++.+.- ..++|++ +|+....++++-.....- -+++..+
T Consensus 84 klApLiGA~~~-Evvv~-dtts~nl~k~L~aal-------------r~~~~r~-vIv~E~~~fpTdly~a~g-~~~~~~~ 146 (407)
T COG3844 84 KLAPLIGARAG-EVVVT-DTTSINLFKVLAAAL-------------RPQEGRR-VIVSEGDNFPTDLYIAEG-LADLLGI 146 (407)
T ss_pred HhhhhhcCCCC-ceEEe-CCcchHHHHHHHHHh-------------ccCCCce-EEeecCCCCCcchhhhcc-hhhhhcc
Confidence 99999999988 88888 678887777665541 1344554 555555666665544321 1122222
Q ss_pred ecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCC
Q 043646 209 GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDG 288 (625)
Q Consensus 209 ~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~ 288 (625)
..+-.+.+.+.+++++++ +++.+|++++++.-||...|+.+|..++|++|+++++|-||++|.++++++.+ |
T Consensus 147 ~~~~~~~~~P~~~~~~~~-----dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~---g 218 (407)
T COG3844 147 GYDLEGVIAPRALEEAIT-----DDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAA---G 218 (407)
T ss_pred cccceeeeChHHHHHhhc-----cceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeeccc---C
Confidence 223345567889999998 68999999999999999999999999999999999999999999999999998 9
Q ss_pred CcEEEEcCCCCC-CCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HH
Q 043646 289 YDAIFLATHKFL-GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RA 365 (625)
Q Consensus 289 ~D~v~~S~hK~l-ggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~a 365 (625)
+||.+.+.||++ |||++++++++.++. .+...|...||+. ...+|.+.......+...+|..||+++.+.. ..
T Consensus 219 aDfaigcsyKYLNgGPGapa~l~v~~~h--~e~~~~~lsgW~g--ha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~ 294 (407)
T COG3844 219 ADFAIGCSYKYLNGGPGAPAGLFVAPRH--RERSWPPLSGWWG--HARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEG 294 (407)
T ss_pred CCeeeeeeceeccCCCCCceeEEecccc--ccccccccccccC--CCCcchhhhccCcCccccceeeCCcchhhhHHHhh
Confidence 999999999999 678889999999988 4455566667655 2333333322233344678999999988764 46
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC-C--cEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 366 ALAFWVKEYIGYEVIKKQEDVYIESALGRILPN-Q--NIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l-~--gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
+++.+ ...++..++++...|+.++.+.+... + ++++.+|.+ +.|++.++|.... ..
T Consensus 295 aLDif--a~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~------------------~~ 354 (407)
T COG3844 295 ALDIF--ADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH------------------GY 354 (407)
T ss_pred hhhhh--hhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc------------------HH
Confidence 77777 56789999999999999999988653 3 789998876 6899999998753 56
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~ 520 (625)
.|++.|.+ +||...- ..|+.+|+.| ++|++.+||-..+++|++++
T Consensus 355 ~V~qaLi~-rGVigD~---------------------------------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL 400 (407)
T COG3844 355 QVMQALID-RGVIGDF---------------------------------REPDVLRFGFTPLYVSFVDVWDAVDALEEVL 400 (407)
T ss_pred HHHHHHHH-cCccccc---------------------------------cCCCeeeecCccceechhHHHHHHHHHHHHH
Confidence 89999966 6886431 1479999999 69999999999999999998
Q ss_pred Hhh
Q 043646 521 AYG 523 (625)
Q Consensus 521 ~~~ 523 (625)
..+
T Consensus 401 ~t~ 403 (407)
T COG3844 401 DTL 403 (407)
T ss_pred Hhh
Confidence 764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=258.42 Aligned_cols=333 Identities=15% Similarity=0.083 Sum_probs=236.7
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
+|+.+. +++.+.+.+++.+++....+++.. + .....+.+++++++++++|.+++ .++|+++| ++++..++.+
T Consensus 24 ~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~la~~~g~~~~-~~~~~~gg-t~a~~~a~~~ 95 (371)
T PRK13520 24 ILSSMC-TEPHPIARKAHEMFLETNLGDPGL--F---PGTAKLEEEAVEMLGELLHLPDA-YGYITSGG-TEANIQAVRA 95 (371)
T ss_pred eeeeee-cCchHHHHHHHHHHHhcCCCCccc--C---ccHHHHHHHHHHHHHHHhCCCCC-CeEEecCc-HHHHHHHHHH
Confidence 566655 445567778888877654455432 1 23566778999999999998765 67887444 4445444443
Q ss_pred h-cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 160 M-GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 160 l-~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
+ .. ...+++ .|+++..+|+++....+..|++++.+|.+.++.+|+++|+++++ +++++|+
T Consensus 96 ~~~~------------~~~~~~--~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~~vi 156 (371)
T PRK13520 96 ARNL------------AKAEKP--NIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLID-----DNTIGIV 156 (371)
T ss_pred HHhh------------ccCCCc--eEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHh-----hCCEEEE
Confidence 3 10 012455 49999999999888888889999999998888999999999998 4688888
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc-------cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI-------NLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i-------d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|+||.+.|+++|+++|+++|+++++|+||+.+..+. ++.. .++|++++++|||.++|.++|++++
T Consensus 157 ~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~---~~vd~~~~s~~K~~~a~~~~G~~~~ 233 (371)
T PRK13520 157 GIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL---PGVDSITIDPHKMGLAPIPAGGILF 233 (371)
T ss_pred EEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC---CCCceEEECCccccCccCCceEEEE
Confidence 88899999999999999999999999999999998665332 2222 3789999999999877877888887
Q ss_pred ecc-ccccCCC---CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHH
Q 043646 312 SKA-LYQLGSS---PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 312 ~~~-~~~l~~~---~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+++ + ++.+ .|...++. +....||++...++ .++++.+ ...|.+.+.++..
T Consensus 234 ~~~~~--~~~l~~~~~~~~~~~--------------------~~~~~gt~~~~~~~~~~~al~~l--~~~g~~~~~~~~~ 289 (371)
T PRK13520 234 RDESY--LDALAVDTPYLTSKK--------------------QATLTGTRSGAGVAATYAVMKYL--GREGYRKVVERCM 289 (371)
T ss_pred cCHHH--HHhhcccCccccCCC--------------------CcceEeeccChHHHHHHHHHhhh--cHhHHHHHHHHHH
Confidence 654 4 2222 12111111 11123555433332 3444443 3457788889999
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
++++++.+.|.++ +++++.+. ..++++|... +..++.+.|.+ .||.++.+ .
T Consensus 290 ~~~~~l~~~L~~~-g~~~~~~~---~~~~v~~~~~------------------~~~~v~~~L~~-~gi~v~~~---~--- 340 (371)
T PRK13520 290 ENTRWLAEELKER-GFEPVIEP---VLNIVAFDDP------------------NPDEVREKLRE-RGWRVSVT---R--- 340 (371)
T ss_pred HHHHHHHHHHHhC-CCEEecCC---CceEEEEecC------------------CHHHHHHHHHH-CCceeccC---C---
Confidence 9999999999987 88743321 3455555432 14578888865 59998742 1
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++|||+++++|++|+++++++|+++++
T Consensus 341 --------------------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 341 --------------------------CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred --------------------------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 136799999999999999999999998754
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=256.11 Aligned_cols=322 Identities=14% Similarity=0.111 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh-H
Q 043646 118 RMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN-L 195 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~ 195 (625)
.+.+.++++++.+++++|++++. .++++++| +.++..++..+ +.++++ +|++.+.+|.+. .
T Consensus 28 ~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~g-t~~l~~~~~~~---------------~~~~~~-vi~~~~~~~~~~~~ 90 (355)
T TIGR03301 28 EFNDVTDQVRDRLLALAGGDDNHTCVLLQGSG-TFAVEATIGSL---------------VPRDGK-LLVLINGAYGERLA 90 (355)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCc-HHHHHHHHHhc---------------cCCCCe-EEEECCCchhhHHH
Confidence 34578999999999999998753 57788554 55677776665 356665 466666666553 3
Q ss_pred HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 196 LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
...+..|++++.++.+.++.+|+++++++++++ ++++++++++++|+||.+.|+++|+++|++||+++++|++++.|
T Consensus 91 ~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g 167 (355)
T TIGR03301 91 KICEYLGIPHTDLNFSEYEPPDLNRIEEALAAD---PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFG 167 (355)
T ss_pred HHHHHcCCceEEEecCCCCCCCHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccC
Confidence 445678999999998877889999999999742 46788999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
..++++..+ ++|++++|+|||+++|.|+|++++++++. +.+...... ...+... ...+.. ..+...+
T Consensus 168 ~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~~--~~~~~~~~~-~~~~~~~-----~~~~~~--~~~~~~~ 234 (355)
T TIGR03301 168 AIPIDIEEL---DVDALIASANKCLEGVPGFGFVIARRDLL--EASAGNARS-LYLDLYD-----QWAYME--KTGKWRF 234 (355)
T ss_pred Ccccchhhc---CccEEEecCCcccccCCceeEEEECHHHH--HHhhCCCCC-ceeeHHH-----HHHHhh--hcCCCCC
Confidence 888888776 88999999999998888899999999873 222211000 0000000 000000 0011234
Q ss_pred ChhHHHHH--HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 356 TPQIVQMI--RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 356 t~~~~~~~--~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
|++...+. .++++.+ ...| ++.+.++.+.+++++.+.|.++ +++++.+. ..+.+++.+...+..
T Consensus 235 t~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~-~~~~~~~~~~~~~~~--------- 301 (355)
T TIGR03301 235 TPPTHTVYAFAQALEEL--EAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPE-RWQSPIIVSFLYPDD--------- 301 (355)
T ss_pred CCcHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCC-CCCCCcEEEEECCCC---------
Confidence 56655443 3455554 2344 7888888899999999999887 77766553 234454433333321
Q ss_pred cCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 043646 433 ERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512 (625)
Q Consensus 433 ~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~l 512 (625)
...+..++.+.|.+ .||.+++|..+. .+++||+++.+++++|++++
T Consensus 302 ---~~~~~~~~~~~l~~-~gi~i~~~~~~~------------------------------~~~iRis~~~~~~~~~i~~~ 347 (355)
T TIGR03301 302 ---PDFDFDDFYQELKE-RGFVIYPGKLTL------------------------------ADTFRIGTIGEIDAADIERL 347 (355)
T ss_pred ---CcchHHHHHHHHHH-CCEEEECCcccc------------------------------ccEEEEecCCCCCHHHHHHH
Confidence 01234578888855 699998764321 27899999889999999999
Q ss_pred HHHHHHH
Q 043646 513 LAALEFI 519 (625)
Q Consensus 513 l~aL~~~ 519 (625)
+++|+++
T Consensus 348 ~~~l~~~ 354 (355)
T TIGR03301 348 LEAIKDA 354 (355)
T ss_pred HHHHHhh
Confidence 9999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=256.82 Aligned_cols=349 Identities=16% Similarity=0.150 Sum_probs=242.9
Q ss_pred CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 84 TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 84 ~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.-.+|+++.+++++.++. ..++||.+..+..+.......+++++.+++++|++ +++|+ +|+++++..++.++
T Consensus 27 ~~~~p~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~---~~~~~-~g~t~a~~~al~~l--- 98 (387)
T PRK09331 27 QRGGILTPEARKALIEYG-DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD---EARVT-HGAREGKFAVMHSL--- 98 (387)
T ss_pred hcCCCCCHHHHHHHHHHH-hccCCCcccccccccccChHHHHHHHHHHHHhCCC---cEEEe-CCHHHHHHHHHHHh---
Confidence 345899999999999887 34466644223334445567899999999999985 46777 67777787777766
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHHHhh--hCCCCeEEEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL--DDNGLLDIEALRSQLELYK--AAKRPMLGSF 239 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~~~ld~~~L~~~l~~~~--~~~~~~lv~~ 239 (625)
+++||+ |+++..+|.+...+++..|++++.++. ++++.+|++++++++++.. ..+++++|++
T Consensus 99 ------------~~~gd~--Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l 164 (387)
T PRK09331 99 ------------CKKGDY--VVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALL 164 (387)
T ss_pred ------------cCCCCE--EEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEE
Confidence 478885 999999999998888889999999998 6678899999999997421 1237899999
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG 319 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~ 319 (625)
++++|+||.+.|+++|+++||++|+++++|+||+.|..+++...+ ++|++++|+||++++|.|+|++++++++. +
T Consensus 165 ~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~---g~D~~~~s~~K~l~~~~~~G~l~~~~~~i--~ 239 (387)
T PRK09331 165 THVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKL---GADFIVGSGHKSMAASAPSGVLATTEEYA--D 239 (387)
T ss_pred ECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECHHHH--h
Confidence 999999999999999999999999999999999999999988876 89999999999999898999999998873 2
Q ss_pred CCCCcccCCceEEeeccccccccccccchhhhhcCCChh--HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ--IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~--~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+...... |... . ...+ .++.. ....+.+++..+... . ...++.+.+++++++.|.+
T Consensus 240 ~~~~~~~~---------~~~~---~----~~~~-~~~~~~~~~~~~~aal~~~~~~---~-~~~~~~~~~~~~l~~~L~~ 298 (387)
T PRK09331 240 KVFRTSRK---------FGVK---E----VELL-GCTLRGAPLVTLMASFPHVVER---V-KRWDEEVKKARWFVDELEK 298 (387)
T ss_pred hcccccCC---------Cccc---c----eeee-ceecCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHhc
Confidence 22111100 0000 0 0001 11111 111112334333211 1 2344556678899999999
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
++|++++... ....+++.+... ..... ..+....+..+.+.|.+ +||..-.. +
T Consensus 299 l~g~~~~~~~-~~~~~i~~~~~~-~~~~~------~~~~~~~~~~~~~~L~~-~gI~~~~~-------~----------- 351 (387)
T PRK09331 299 IEGFKQLGEK-PRNHDLMKFETP-SFDEI------AKKHKRRGFFLYEELKK-RGIHGIKP-------G----------- 351 (387)
T ss_pred CCCEEEeccC-cCcCCeEEEeCC-chhHH------hhhccccchhHHHHHHH-cCceEEcc-------C-----------
Confidence 9999998632 112344444322 11000 00112234578888854 69973210 0
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+|+.. ..++++|+++++++|++++.+
T Consensus 352 --------------~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 352 --------------ATKEFKLST-YGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred --------------CceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence 124566665 337999999999999998765
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=259.25 Aligned_cols=335 Identities=13% Similarity=0.117 Sum_probs=236.7
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcch---hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSY---VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~---~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
..|..|++++.+++..+. |.+.+.+. .+..+.++++++++.++++++++.+++|+|+.+++|.++..++..+
T Consensus 2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl---- 76 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL---- 76 (349)
T ss_pred CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc----
Confidence 468899999999987665 77765553 3445568999999999999998554578888555788899988876
Q ss_pred cchhhhhhhhccCCCCceEE-EEcCCCCchhHHHHHHcCCeEEEEecCC----CCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 165 PSIMRDKLITSLRDEERWVV-FLGPYEHHSNLLSWRQSLAEVVEIGLDD----NGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~V-lv~~~~h~s~~~~~~~~G~~vv~v~~~~----~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
+.++++..+ ..+...|.. ....+..|+ ++.+..++ ...+++++++ ++ +++++|++
T Consensus 77 -----------~~~~~~~l~i~~G~fg~r~-~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~v~~ 136 (349)
T TIGR01364 77 -----------LAEGKVADYIVTGAWSKKA-AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--IS-----EDAAYVHY 136 (349)
T ss_pred -----------CCCCCeEEEEECCHHHHHH-HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CC-----CCCCEEEE
Confidence 456776222 223333333 234556788 77777542 2356666554 22 57899999
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG 319 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~ 319 (625)
+|+.|.||+..| ++++.++++++||+++++|+.++|++++ |++++|.||+|| |.|+|++++++++ ++
T Consensus 137 th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~~-----d~~~~ssqK~lg-P~Glg~l~~s~~~--~~ 203 (349)
T TIGR01364 137 CANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSKF-----GLIYAGAQKNIG-PAGLTVVIVRKDL--LG 203 (349)
T ss_pred cCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHHHc-----cEEEEecccccC-CCceEEEEECHHH--Hh
Confidence 999999999877 6677789999999999999999999865 699999999997 9999999999998 44
Q ss_pred CCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHhhC
Q 043646 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~l~~~L~ 396 (625)
.+.|... ... .+..........|||++..+. .++++++ ..+ |++.+.+|++.+++++++.|+
T Consensus 204 ~~~~~~~--~~~-----------~~~~~~~~~~~~~Tp~~~~i~al~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 204 RASRITP--SML-----------NYKIHAENDSMYNTPPTFAIYVSGLVFKWL--KEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred hcccCCC--Ccc-----------hHHHHHhcCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4544211 000 000000112335899988875 4667776 566 799999999999999999999
Q ss_pred CCCcEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 397 PNQNIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
+++|+.........+. .+++|.+... .+ ..++...+ .+.||.+..|..
T Consensus 269 ~~~gl~~~~~~~~~rs~~v~sf~~~~~--------------~~-~~~~~~~~-~~~Gi~~~~~~~--------------- 317 (349)
T TIGR01364 269 NSNGFYRNPVDPRNRSRMNVVFTLGNE--------------EL-EKRFLKEA-EERGLVSLKGHR--------------- 317 (349)
T ss_pred hCCCeeccCCCHHHcCCeEEEEecCCh--------------hH-hHHHHHHH-HHCCCcccCCcc---------------
Confidence 9988655532212355 4577775321 11 12343444 235665443321
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+.+|+|+.+|+|.+|||+++++|+++.++
T Consensus 318 ----------------~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 318 ----------------SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ----------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 1378999999999999999999999987653
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=254.19 Aligned_cols=353 Identities=16% Similarity=0.085 Sum_probs=238.7
Q ss_pred HHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 043646 52 EEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131 (625)
Q Consensus 52 ~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia 131 (625)
++.+++|++.+-+. .|++.+. +|++.+..+. +.+.+++...+....++++. + ....++.++++++++
T Consensus 3 ~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~la 69 (373)
T TIGR03812 3 EEVLEELKEYRSED-----LKYSDGR--ILGSMCTNPH-PIAVKAYDMFIETNLGDPGL--F---PGTKKIEEEVVGSLG 69 (373)
T ss_pred HHHHHHHHHHHhcC-----CCCCCCc--EEEEEeCCch-HHHHHHHHHHhhcCCCCccc--C---ccHHHHHHHHHHHHH
Confidence 56778888866443 2333222 3444444443 34567776665544455542 1 234577889999999
Q ss_pred HHhCCCCCCcEEEeCChHHHHHHHHHHHhc-ccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec
Q 043646 132 RCLGGGQADAIIFCGAGTTAAIKRLQEVMG-ITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL 210 (625)
Q Consensus 132 ~~~g~~~~~~vift~sGttaal~~l~~~l~-~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (625)
+++|++++ .++++ +|++.++..++.++. +.. .-.+|++ |+++..+|+++...++..|++++.++.
T Consensus 70 ~~~g~~~~-~~~~~-~g~~~~~~~~~~~~~~~~~----------~~~~g~~--vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 70 NLLHLPDA-YGYIV-SGGTEANIQAVRAAKNLAR----------EEKRTPN--IIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred HHhCCCCC-CeEEe-ccHHHHHHHHHHHHHHHHh----------ccCCCcE--EEECCcchHHHHHHHHHcCCeEEEEee
Confidence 99999766 56666 445555544444331 000 0024554 999999999988888889999999999
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc----------ccc
Q 043646 211 DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV----------KIN 280 (625)
Q Consensus 211 ~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~----------~id 280 (625)
+.++.+|+++|+++++ +++..+++.+++|+||.+.|+++|+++||++|+++++|+||+.+.. +++
T Consensus 136 ~~~~~~d~~~l~~~l~-----~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d 210 (373)
T TIGR03812 136 DEDYTVDVKDVEDLID-----DNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD 210 (373)
T ss_pred CCCCCcCHHHHHHHHh-----hCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence 8888899999999997 3565445555789999999999999999999999999999975543 233
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEE-eccccccCCCC---CcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLI-SKALYQLGSSP---PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v-~~~~~~l~~~~---p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
+... ++|++++++|||+.+|.++|++++ ++++ ++.+. |+..+. ......||
T Consensus 211 ~~~~---~~d~~~~s~~K~~~~~~~~G~~~~~~~~~--~~~l~~~~~~~~~~--------------------~~~~~~gt 265 (373)
T TIGR03812 211 FSLP---GVQSITIDPHKMGLSPIPAGGILFRSKSY--LKYLSVDAPYLTVK--------------------KQATITGT 265 (373)
T ss_pred ccCC---CCCEEEECccccCCCcCCceEEEEeCHHH--HhhhcccCcccCCC--------------------CCcceEee
Confidence 3322 789999999998777777776665 5554 22221 111110 01122367
Q ss_pred hhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 357 PQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 357 ~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
++...++ .++++.+ ...|++.+.++..++++++++.|++++...++.+ ..++++|....
T Consensus 266 ~~~~~~~~~~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~v~~~~~~------------- 326 (373)
T TIGR03812 266 RSGASAAATYAVIKYL--GREGYRKIVAECMENTRYLVEELKKIGFEPVIEP----VLNIVAFEVDD------------- 326 (373)
T ss_pred chhHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC----CceEEEEEeCC-------------
Confidence 6655543 3444443 4567888899999999999999998843334432 34555554321
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
..++.+.|.+ .||.++.+. .++++||+++.++|++|++++++
T Consensus 327 -----~~~v~~~L~~-~gi~v~~~~--------------------------------~~~~iRis~~~~~t~edid~l~~ 368 (373)
T TIGR03812 327 -----PEEVRKKLRD-RGWYVSVTR--------------------------------CPKALRIVVMPHVTREHIEEFLE 368 (373)
T ss_pred -----HHHHHHHHHH-CCceeccCC--------------------------------CCCEEEEEEECCCCHHHHHHHHH
Confidence 3478888865 699987431 13789999999999999999999
Q ss_pred HHHH
Q 043646 515 ALEF 518 (625)
Q Consensus 515 aL~~ 518 (625)
+|++
T Consensus 369 ~L~~ 372 (373)
T TIGR03812 369 DLKE 372 (373)
T ss_pred HHhh
Confidence 9985
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=277.81 Aligned_cols=352 Identities=17% Similarity=0.110 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH----HHHHHHHHHhcccccchhhhhhhhccCC-CC--ceEEEEcC
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT----AAIKRLQEVMGITVPSIMRDKLITSLRD-EE--RWVVFLGP 188 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt----aal~~l~~~l~~~~~~~~~~~~~~~l~~-gd--~~~Vlv~~ 188 (625)
..++.+++.++++++++++|. ++|+|+. +++ .+++.++.++ +++ || +.+|+++.
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~---~~v~f~p-naga~ge~a~~~vi~~~---------------~~~~Gd~~r~~vli~~ 623 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGF---DSFSLQP-NAGAAGEYAGLMVIRAY---------------HLSRGDHHRNVCIIPV 623 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CeEEEcC-CCcHHHHHHHHHHHHHH---------------HhccCCCCCCEEEeCC
Confidence 456778999999999999999 3899985 455 4677776666 223 44 45799999
Q ss_pred CCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEE
Q 043646 189 YEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268 (625)
Q Consensus 189 ~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~viv 268 (625)
.+|.++..+|...|++++.|+.+.+|.+|+++|+++++.+ .+++++|++++++|.+|...|+++|+++||++|+++++
T Consensus 624 ~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~--~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~v 701 (993)
T PLN02414 624 SAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAH--KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYM 701 (993)
T ss_pred CcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhcc--CCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999831 13689999999999999999999999999999999999
Q ss_pred eccCcCCC-ccccCCCCCCCCCcEEEEcCCCCCCCCCC-----ceEEEEeccccccCCCCCcccCCceEEeecccccccc
Q 043646 269 DFAASGPY-VKINLRSRNIDGYDAIFLATHKFLGGPGT-----PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 269 D~A~~~g~-~~id~~~~~~~~~D~v~~S~hK~lggp~g-----~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
|+|+..+. ...+..++ |+|++++|.||+|++|.| +|++++++.+ . |..+|+.... ..++
T Consensus 702 DgAq~~a~~~l~~p~~~---GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L--~----p~lPg~~v~~-~~~~----- 766 (993)
T PLN02414 702 DGANMNAQVGLTSPGFI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--A----PFLPSHPVVP-TGGI----- 766 (993)
T ss_pred EecCHHhccCcCCcccc---CCCEEEecCCccCCcCcccCCCCeeeEEEchhh--c----ccCCCCcccc-CCCc-----
Confidence 99999887 34455566 999999999999987754 8999999876 2 3333322100 0000
Q ss_pred ccccchhhhhc---CCChhH-----HHHHHHHHHHHHHhhcCHHHH---HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 343 LYLEDIEEREN---GGTPQI-----VQMIRAALAFWVKEYIGYEVI---KKQEDVYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 343 ~~~~~~~~~~~---~gt~~~-----~~~~~aal~~~~~~~~g~~~i---~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
..|+. .||.+. ..++..+..++ ..+|.+.+ .++...+++|+.++|.+..++.+.++.+ ..
T Consensus 767 ------~~r~~~s~iGt~~~a~~g~al~l~~A~~yi--~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~-~~ 837 (993)
T PLN02414 767 ------PRPEKTQPLGTISAAPWGSALILPISYTYI--AMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNG-TC 837 (993)
T ss_pred ------ccccCCCCcCCccchhhhhHHHHHHHHHHH--HHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCC-Ce
Confidence 01111 355221 12233444554 45565544 8888999999999998754554444321 00
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
..-+.+-+. .. +...+++..++++.|. ++||....-.+ |
T Consensus 838 ~hEfv~~~~-~l---------~~~~g~~~~di~krL~-d~Gihapt~~~---p--------------------------- 876 (993)
T PLN02414 838 AHEFIIDLR-PF---------KNTAGIEPEDVAKRLM-DYGFHAPTMSW---P--------------------------- 876 (993)
T ss_pred eeeEEEecc-cc---------ccccCCCHHHHHHHHH-HcCcEEeeecc---c---------------------------
Confidence 001111111 10 1123456788999998 48998754221 1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCcccccccccccccccchh------hhhhh-hcccccCCc
Q 043646 492 KPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIK------DLIDK-ETNNNINNP 561 (625)
Q Consensus 492 ~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~~w~~~~~~~~------~~~~~-~~~~~~~~~ 561 (625)
.++.+||+++.+++++|+|+|+++|+.+..+... +++|.|...++.|| .+++. +|-..|+..
T Consensus 877 v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~--------~~~g~~~~~~~~l~~ap~~~~~~~~~~w~~~y~r~ 945 (993)
T PLN02414 877 VPGTLMIEPTESESKAELDRFCDALISIREEIAD--------IENGKADRENNVLKGAPHPPSLLMADKWDKPYSRE 945 (993)
T ss_pred cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH--------HhcCCCCCCCchhhcCCCChHHhhcCCCCCCcChh
Confidence 1488999999999999999999999999988654 78888888888877 34554 686555443
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=259.57 Aligned_cols=342 Identities=12% Similarity=0.102 Sum_probs=237.9
Q ss_pred ccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc---hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 81 ADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS---YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 81 ld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~---~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
|=+++.+..|+.|.+++.+.+..+. +.+.+.+ +.+..+.++++++++.+++++|++.+.+++|+.+++++++..++
T Consensus 6 l~~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~ 84 (360)
T PRK05355 6 NFSAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVP 84 (360)
T ss_pred eccCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHH
Confidence 3356667889999999988875432 4333322 34555669999999999999998544467777667777788776
Q ss_pred HHhcccccchhhhhhhhccCCCCce-EEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHH-HHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERW-VVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRS-QLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~-~l~~~~~~~~~ 234 (625)
..+ +.+|++. +|+.+..+|.+. ...+..|.. +.+..++ .+..+..++++ +|+ +++
T Consensus 85 ~nl---------------~~~g~~~l~i~~G~fg~r~~-~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~-----~~~ 142 (360)
T PRK05355 85 MNL---------------LGGGKKADYVDTGSWSKKAI-KEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS-----DDA 142 (360)
T ss_pred Hhc---------------CCCCCeEEEEECCHHHHHHH-HHHHHhCCc-eEEecccccCCCCCCChhhccCC-----CCC
Confidence 665 5677652 223334444443 345566865 6666554 45555555555 665 468
Q ss_pred eEEEEecccCcccccc-CHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 235 MLGSFSACSNVTGIYS-DTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~-~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
++|+++|+.|.||... |+++| +|++++||+++++|+.++|++++ |++++|.||+|| |.|+|++++++
T Consensus 143 ~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~-----d~~~~ssqK~lg-P~Glg~l~~s~ 210 (360)
T PRK05355 143 AYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF-----GLIYAGAQKNIG-PAGLTIVIVRE 210 (360)
T ss_pred CEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc-----cEEEEecccccc-CCceEEEEECH
Confidence 9999999999999998 77776 89999999999999999999865 699999999997 99999999999
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDVYIES 390 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~ 390 (625)
++ ++.+.|.. + +..++. .+ .......|||++..+. .++++++ ..+ |.+.+.+|++.++++
T Consensus 211 ~~--l~~~~~~~-~-~~~~~~--------~~---~~~~~~~~Tp~~~~i~aL~~aL~~i--~~~gG~e~i~~r~~~l~~~ 273 (360)
T PRK05355 211 DL--LGRALPSI-P-SMLDYK--------TH---ADNDSMYNTPPTFAIYLAGLVFKWL--KEQGGVAAMEKRNQEKAAL 273 (360)
T ss_pred HH--HhhcccCC-C-hHHHHH--------HH---HhcCCccCCCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHH
Confidence 98 44555531 1 121111 00 1122345899988876 4667776 567 899999999999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
+++.|++++.+..+.+. ..+. .+++|.+... ....++...+. +.||.+..|..
T Consensus 274 l~~~l~~~~~~~~~~~~-~~rs~~v~sf~~~~~---------------~~~~~~~~~~~-~~Gi~~~~~~~--------- 327 (360)
T PRK05355 274 LYDAIDSSDFYRNPVAP-EDRSRMNVPFTLADE---------------ELDKKFLAEAK-AAGLVGLKGHR--------- 327 (360)
T ss_pred HHHHHHhCCCcccCCCh-hhcCCcEEEEEcCCh---------------HHHHHHHHHHH-HCCCcccCCCC---------
Confidence 99999998643333321 2355 5678776331 11123333332 24555432211
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..|.+|+|+++|+|.+|||+|+++|++++..
T Consensus 328 ----------------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 328 ----------------------SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred ----------------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1378999999999999999999999997654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=257.78 Aligned_cols=343 Identities=11% Similarity=0.103 Sum_probs=236.9
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
...++.|.+++......... .++.+..+.+.++++++.+++++|++++++|+|+.+++|.++..++..+
T Consensus 12 ~~~~~~v~~a~~~~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l------ 80 (361)
T TIGR01366 12 SKVRLEQLQALTTTAASLFG-----TSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL------ 80 (361)
T ss_pred cCCCHHHHHHHHhcCccccc-----cCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc------
Confidence 45667788887643211111 1235567889999999999999999655478886456777888887765
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc---CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEeccc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS---LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACS 243 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~---G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~ 243 (625)
+.+ + .+++...+|.+....+... +.++..++.+.+..++.+ +. +++++|+++|++
T Consensus 81 ---------~~~-~--~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~lV~~~h~e 138 (361)
T TIGR01366 81 ---------IEK-K--SLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEPQ-----AD-----PGVDVIAWAHNE 138 (361)
T ss_pred ---------ccc-c--ccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCCc-----cC-----CCCCEEEEcccC
Confidence 222 2 2455556666554443321 337777777654444431 22 589999999999
Q ss_pred CccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCC
Q 043646 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPP 323 (625)
Q Consensus 244 n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p 323 (625)
|.||.+.|+++| +|++|+++|||++|++|+.++|+.. +|++++|+||++|+|+|++++++++++ ++.+.+
T Consensus 139 t~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-----~D~~~~s~~K~lg~~~Gl~~~~~s~~~--~~~~~~ 208 (361)
T TIGR01366 139 TSTGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-----TDVYYFAPQKNFASDGGLWLAIMSPAA--LERIEA 208 (361)
T ss_pred Cccceecccccc---cccCCCeEEEEcCccccCCCCCHHH-----CCEEEEEchhhcCCCCceEEEEECHHH--Hhhhhc
Confidence 999999999998 5889999999999999999999973 699999999999999888888999988 445555
Q ss_pred cccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
...++..+.+. .+...+.....+....+||++..+. .++++++ ... |.+.+.++++.+++++++.|.++++
T Consensus 209 ~~~~~~~~p~~----~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gg~e~~~~r~~~l~~~l~~~l~~~~~ 282 (361)
T TIGR01366 209 IAASGRWVPEF----LSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWM--NGNGGLDWAVARTADSSSRLYSWAQERPY 282 (361)
T ss_pred ccCCCCCCchh----hhHHHHHhccccCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55554332110 0111111111112345667776553 5667776 445 6999999999999999999999877
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHH
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~ 480 (625)
++++......+.+.+....+++ +++..++.+.|.+ +||.+.+|. +. +
T Consensus 283 ~~~~~~~~~~~s~~v~~v~~~~--------------g~~~~~v~~~L~~-~gI~i~~~~------~~--l---------- 329 (361)
T TIGR01366 283 ATPFVTDPGKRSQVVGTIDFVD--------------DIDAATVAKILRA-NGIVDTEPY------RK--L---------- 329 (361)
T ss_pred cccCCCChhhcccceEEEECCC--------------ccCHHHHHHHHHH-CCCeeccCc------cc--c----------
Confidence 7776532222233322222222 2467789998954 699986432 11 1
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|||++.|+|.+|+++++++|++++.+
T Consensus 330 -----------~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 330 -----------GRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred -----------CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 2468999999999999999999999998754
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=256.08 Aligned_cols=362 Identities=17% Similarity=0.170 Sum_probs=240.9
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDS-YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~-~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
....|+.+.+++.+.. .+.+-+.... ..+.+..+++.++++++++++|.+. ..++.++|+++.+..++.+...
T Consensus 79 ~~~~~p~i~~~~~~~~--~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~--~~l~~~~GA~a~~~~l~~~r~~-- 152 (481)
T PRK04366 79 TMKYNPKINEKVARLP--GFAELHPLQPEETVQGALELMYELQEWLKEITGMDA--VTLQPAAGAHGELTGLLMIRAY-- 152 (481)
T ss_pred CCCCCHHHHHHHHhCc--chhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCc--eEEEeCcHHHHHHHHHHHHHHH--
Confidence 3567778888887642 1223222111 2456678899999999999999973 3455557777765543321100
Q ss_pred cchhhhhhhhccCCCC--ceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecc
Q 043646 165 PSIMRDKLITSLRDEE--RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSAC 242 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~ 242 (625)
.+++|| +..|+++...|+++...++..|++++.++++.++.+|+++|+++++ +++++|+++++
T Consensus 153 ----------~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~-----~~t~~V~v~~P 217 (481)
T PRK04366 153 ----------HEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVG-----EDTAALMLTNP 217 (481)
T ss_pred ----------hhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcc-----cCCeEEEEeCC
Confidence 024443 2359999999999998888899999999998888999999999997 57999999987
Q ss_pred cCccccc-cCHHHHHHHHHHcCCEEEEeccCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCCC-----ceEEEEeccc
Q 043646 243 SNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPGT-----PGILLISKAL 315 (625)
Q Consensus 243 ~n~TG~~-~~l~~I~~la~~~g~~vivD~A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~g-----~G~l~v~~~~ 315 (625)
+ +||.+ .|+++|+++||++|++++||+|++.+.. .++..++ |+|++++++|||||+|.| +|++++++++
T Consensus 218 n-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~---GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~ 293 (481)
T PRK04366 218 N-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDM---GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL 293 (481)
T ss_pred C-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCcccc---CCCEEEEechhhcCCCCCCCCCCeeeeeehhhh
Confidence 6 99988 5899999999999999999999986633 2344444 899999999999987743 5799999887
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW-VKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~-~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
.+.+++...|...-.+... .......+|++.++.+.+.++.+ ..++ .....|++++.++...+++|+.++
T Consensus 294 --~~~lp~~~v~~~g~~~~l~------~~r~~~i~r~~a~t~~~l~~~~a-~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~ 364 (481)
T PRK04366 294 --APFLPVPVVEKDGDRYRLD------YDRPKSIGRVRAFYGNFGVLVRA-YAYIRSLGAEGLREVSEDAVLNANYLKAR 364 (481)
T ss_pred --HhhCCCCeeeccCCceeec------ccccccCCCcccccCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444332110011110 00111124666666665444333 3333 223445667777888889999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|.++ +++..+. ..+..|.+.... ..-.+++..++.+.|.+ +||.++......
T Consensus 365 L~~~--~~~~~~~----~~~~~~~~~~~~---------~~~~g~~~~~v~~~L~~-~Gi~~~~~~~p~------------ 416 (481)
T PRK04366 365 LKDI--YDLPYDR----PCMHEFVLSGKK---------LKETGVRTLDIAKRLLD-YGFHPPTIYFPL------------ 416 (481)
T ss_pred hHhh--CcccCCC----CeeEEEEEECcc---------ccccCCCHHHHHHHHHH-CCccCCcccccc------------
Confidence 9886 3332221 111122221100 00112356789999965 799865211100
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
...+.+|++++.++|++|||+++++|+++..+...
T Consensus 417 ----------------~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 417 ----------------IVPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred ----------------ccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 01478999999999999999999999999877544
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-26 Score=248.89 Aligned_cols=358 Identities=17% Similarity=0.101 Sum_probs=235.4
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh--hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV--GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~--~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
..+++..+..+..++.++++..... .. .+.++ .+.. ..+..++.+++++++++++|++.+ +++++.+|++++..
T Consensus 21 ~~~~l~~g~~~~~~p~~~~~~~~~~-~~-~~~~~-~~~~~~~~g~~~~~~~~~~~la~~~g~~~~-~v~~~~~g~~~~~~ 96 (398)
T cd00613 21 SMSFLGSGTYKHNPPAVIKRNILEN-EF-YTAYT-PYQPEISQGRLQALFELQTMLCELTGMDVA-NASLQDEATAAAEA 96 (398)
T ss_pred CcccccccccCCcCcHHHHHHhccc-cC-cccCC-CCChhhhhhHHHHHHHHHHHHHHHHCCCcc-ceeccCchHHHHHH
Confidence 4567777777766666666544433 11 11111 1111 345678899999999999999765 57676566666544
Q ss_pred HHHHHhcccccchhhhhhhhccCC--CCceEEEEcCCCCchhHHHHHHcC----CeEEEEecCCCCCCCHHHHHHHHHHh
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRD--EERWVVFLGPYEHHSNLLSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELY 228 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~--gd~~~Vlv~~~~h~s~~~~~~~~G----~~vv~v~~~~~~~ld~~~L~~~l~~~ 228 (625)
.+..++ +.+ ||+ |+++..+|+++...|...| ++++.++.+.++.+|+++|+++++
T Consensus 97 ~~~~~~---------------~~~~~gd~--Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-- 157 (398)
T cd00613 97 AGLAAI---------------RAYHKRNK--VLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS-- 157 (398)
T ss_pred HHHHHH---------------hcccCCCE--EEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC--
Confidence 444433 234 664 9999999999998888777 999999987777899999999987
Q ss_pred hhCCCCeEEEEecccCccccccCH-HHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCC----
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSDT-RSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGP---- 303 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~l-~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp---- 303 (625)
+++++|++++++ +||.+.|+ ++|+++|++||+++|+|++|+.+....+...+ ++|++++|+|||+ +|
T Consensus 158 ---~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~---~~d~~~~s~~K~~-~p~g~G 229 (398)
T cd00613 158 ---EEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY---GADIVVGNLQKTG-VPHGGG 229 (398)
T ss_pred ---CCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc---CCCEEEeeccccC-CCCCCC
Confidence 579999999985 89999885 99999999999999999998876655555454 7899999999998 44
Q ss_pred -CCceEEEEeccccccCCCCCcccCCceEEe-eccccccccccccchhhhhcCCChhHH-----HHHHHHHHHHHHhhcC
Q 043646 304 -GTPGILLISKALYQLGSSPPSTCGGGTVNY-VNAFDEKDTLYLEDIEERENGGTPQIV-----QMIRAALAFWVKEYIG 376 (625)
Q Consensus 304 -~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~-~~~~~~~~~~~~~~~~~~~~~gt~~~~-----~~~~aal~~~~~~~~g 376 (625)
.+.|++++++++ .+.+.+...|+..... ...|..... ......+++.|++++. ....++..+......|
T Consensus 230 gp~~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g 305 (398)
T cd00613 230 GPGAGFFAVKKEL--VRFLPGRLVGVTKDAEGNRAFRLALQ--TREQHIRREKATSNICTGQALLALMAAMYIVYLGPEG 305 (398)
T ss_pred CCceeEEEEhhhh--HhhCCCCeeccccccCCCcceEEecc--cchhhcccccccccceecHHHHHHHHHHHHHHhCHHH
Confidence 346899998877 3444444433322100 000000000 0001223445554322 1112222222224457
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee
Q 043646 377 YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR 456 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~ 456 (625)
.+++.++.++++++++++|.++++..... ..+.+++.|.+... .+.+..++++.|.+ .||.+.
T Consensus 306 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~~v~~~~~~~-------------~~~~~~~~~~~L~~-~gi~~~ 368 (398)
T cd00613 306 LKEIAERAHLNANYLAKRLKEVGGVLPFN---GPFFHEFVLRLPPL-------------YGIRAEDLAKALID-GGFHAP 368 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCeeEEEEEEcCCc-------------chHHHHHHHHhhhh-cCcccc
Confidence 78889999999999999999886544211 12334455444210 01235678888865 688753
Q ss_pred cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 457 GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 457 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
... +. .++.+|+|+++++|++|+|+++++|
T Consensus 369 ~~~----------~~--------------------~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 369 TMY----------LP--------------------VDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ccc----------cC--------------------CCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 210 00 2478999999999999999999874
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=242.43 Aligned_cols=344 Identities=15% Similarity=0.135 Sum_probs=234.4
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
++..+.+.+++.++. ..++|+....+..+........++++.+++++|. + +++++ +|++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~-~i~~~-~g~t~al~~~l~~~------ 79 (361)
T cd06452 11 GRLTPEARKALIEWG-DGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--D-EARVT-PGAREGKFAVMHSL------ 79 (361)
T ss_pred CCCCHHHHHHHHHHh-cccCCccccccccccccCchHHHHHHHHHHHcCC--c-eEEEe-CCHHHHHHHHHHHh------
Confidence 677788888887766 3346665422223333345688999999999998 3 68888 77888888887776
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC--CCCHHHHHHHHHHhhh--CCCCeEEEEecc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG--LLDIEALRSQLELYKA--AKRPMLGSFSAC 242 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~--~ld~~~L~~~l~~~~~--~~~~~lv~~~~~ 242 (625)
+++||+ |+++...|++....++..|++++.++.+.++ .+|+++|++++++... .+++++|+++++
T Consensus 80 ---------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p 148 (361)
T cd06452 80 ---------CEKGDW--VVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHV 148 (361)
T ss_pred ---------cCCCCE--EEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECC
Confidence 578885 9999999999987888899999999998654 8999999999874211 136899999999
Q ss_pred cCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCC
Q 043646 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSP 322 (625)
Q Consensus 243 ~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~ 322 (625)
+|+||.+.|+++|+++|+++|+++++|+|++.|..+++...+ +.|+++.|+||++++|.++|++++++++. +.+.
T Consensus 149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~~~~~G~l~~~~~~~--~~l~ 223 (361)
T cd06452 149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKEL---GADFIVGSGHKSMAASAPIGVLATTEEWA--DIVF 223 (361)
T ss_pred CCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHc---CCCEEEecCCccccCCCCeEEEEECHHHH--HHHh
Confidence 999999999999999999999999999999988877777665 78999999999998888899999998773 2221
Q ss_pred CcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 323 PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
.....+. +.. .....+++..... +.+++..+. +. .+. ..+..+.++++++.|+++++
T Consensus 224 ~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~al~~~~-~~--~~~-~~~~~~~~~~l~~~L~~l~g 282 (361)
T cd06452 224 RTSQMFK-IKE----------------VELLGCTLRGAPLVTLMASFPHVK-ER--VKR-WDEEVEKARWFVAELEKIEG 282 (361)
T ss_pred ccccccc-cce----------------eeeeccccCchHHHHHHHHHHHHH-HH--HHH-HHHHHHHHHHHHHHHhcCCC
Confidence 1110000 000 0011233322111 223333331 11 222 23334456899999999999
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHH
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~ 480 (625)
++++++. ....+++.+... .... ........+.++.+.|.+ +||.+. +. +
T Consensus 283 ~~v~~~~-~~~~n~~~~~~~-~~~~------~~~~~~~~~~~~~~~L~~-~gI~~~----~~--------~--------- 332 (361)
T cd06452 283 IKQLGEK-PKNHDLMFFETP-SFDE------IAKKHKRRGYFLYSELKK-RGIHGI----KP--------G--------- 332 (361)
T ss_pred eEEECCC-CCCCceEEEEcC-Ccch------hhhhccccchhHHHHHHH-cCceEE----cC--------C---------
Confidence 9998542 123344444432 1000 000001123468888855 699842 10 0
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
..+++|++... .+++|++.++++|+++.
T Consensus 333 -----------~~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 -----------LTRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -----------CceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 13689999822 59999999999999764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=250.29 Aligned_cols=322 Identities=19% Similarity=0.169 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
....+...+.++++++++|++.+ ++++| +|+++++..++.++. +.++++ |+++..+|+++..
T Consensus 108 ~g~~~~~~e~~~~la~l~g~~~~-~v~~~-~g~t~~~~~~~~a~~--------------~~~g~~--Vlv~~~~~~~~~~ 169 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTGMDVA-NASMY-DGATALAEAALMAVR--------------ITKRKK--VLVSGAVHPEYRE 169 (447)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcc-eEEec-CcHHHHHHHHHHHHH--------------hcCCCE--EEEeCccCHHHHH
Confidence 34666777888899999999877 78888 678888887776652 356775 9999999999988
Q ss_pred HHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEE--ec
Q 043646 197 SWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF--DF 270 (625)
Q Consensus 197 ~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~viv--D~ 270 (625)
.++. .|++++.++++++ .+|+++|+++++ +++++|+++++ |+||.+.|+++|+++||++|+++++ |.
T Consensus 170 ~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~-----~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~ 242 (447)
T PRK00451 170 VLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD-----DDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDP 242 (447)
T ss_pred HHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC-----CCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcCh
Confidence 8765 5899999999877 899999999997 57999999998 8999999999999999999999998 64
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCC-----CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKF-----LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
+ +.|.... ...+ ++|+++++.||| ++|| |+|++++++++ ++.+++...|+ +...............
T Consensus 243 ~-~~g~~~~-~~~~---~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~--~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 313 (447)
T PRK00451 243 V-SLGLLKP-PGEY---GADIVVGEGQPLGIPLSFGGP-YLGFFATRKKL--VRQMPGRLVGE-TVDADGKRGFVLTLQA 313 (447)
T ss_pred H-HhccCCC-cccC---CCCEEEECCCcCCCCCCCCCC-CchHHHhhHHH--HhhCCCCEeee-ecccCCCeeeEeeccc
Confidence 4 3443322 2333 889999999997 6777 58999999988 44555555544 2111110000000001
Q ss_pred cchhhhhcCCChhHH-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEec
Q 043646 346 EDIEERENGGTPQIV-----QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 346 ~~~~~~~~~gt~~~~-----~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~ 420 (625)
.....+++.++.++. ..+.++..+......|.+.+.++...+++++.++|.++++++++.. +.+.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~~~~~~~v 387 (447)
T PRK00451 314 REQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDG------PFFNEFVV 387 (447)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCC------CeEEEEEE
Confidence 111223444454332 2122222211124567889999999999999999999989988622 22222211
Q ss_pred cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee-cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR-GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
.- +.+..++++.|.+ +||.+. .+..+. . + .++++|+|
T Consensus 388 ~~--------------~~~~~~~~~~L~~-~gi~~~~~~~~~~----~---~--------------------~~~~~rvs 425 (447)
T PRK00451 388 RL--------------PKPAEEVNEALLE-KGILGGYDLGRYY----P---E--------------------LGNHLLVC 425 (447)
T ss_pred ec--------------CCCHHHHHHHHHh-cCCCCCccccccc----C---C--------------------cCCEEEEe
Confidence 10 0135688998865 577632 111110 0 1 13789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 043646 500 FPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~ 520 (625)
+++++|++|+++++++|++++
T Consensus 426 ~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 426 VTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=236.69 Aligned_cols=345 Identities=14% Similarity=0.154 Sum_probs=225.5
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
+|..++.+.+++.++-... +..+.........+....+++++.+++++|.++ ++++ +|+++++..++.++
T Consensus 17 ~g~~~~~~~~a~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~---~~i~-~g~~~a~~~~~~~l----- 86 (370)
T TIGR02539 17 GGVLTEAARKALVEFGDGY-SVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDE---ARVT-HGAREGKFAVMHAL----- 86 (370)
T ss_pred CCCCcHHHHHHHHHHhhcc-ccccccccccccccchHHHHHHHHHHHHhCCCc---eEEE-CChHHHHHHHHHHh-----
Confidence 5778888888887765321 111111111112234456778888999999963 4556 67788788888877
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh--CCCCeEEEEec
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA--AKRPMLGSFSA 241 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~--~~~~~lv~~~~ 241 (625)
+++||. |+++...|++....++..|++++.++.+. ++.+|+++|++++++... ..++++|++++
T Consensus 87 ----------~~~gd~--Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~ 154 (370)
T TIGR02539 87 ----------CKEGDW--VVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTH 154 (370)
T ss_pred ----------hCCCCE--EEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEEC
Confidence 467885 99999999999888888999999999863 478999999999974211 12688999999
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS 321 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~ 321 (625)
++|+||.+.|+++|+++|+++|+++++|+||+.|..+++...+ ++|+++.|+||++++++++|++++++++ ++.+
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~---~~di~v~s~sK~~~~~g~~G~l~~~~~~--i~~l 229 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEI---GADFIVGSGHKSMAASGPCGVLGMSEEW--EDIV 229 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECHHH--Hhhh
Confidence 9999999999999999999999999999999998766666554 6899999999999876778999999887 3333
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
......+ .+. ... ...++...... ..+++... ....+... +....++++++.|.++
T Consensus 230 ~~~~~~~-~~~--------~~~--------~~~~~~~~~~~~~~~~al~~~---~~~l~~~~-~~~~~~~~l~~~L~~~- 287 (370)
T TIGR02539 230 LRKSRYS-PVK--------EVE--------LLGCTSRGAPIVTMMASFPHV---VERVKRWD-EEVKKTRWFVAELEDI- 287 (370)
T ss_pred cccccCC-ccc--------eee--------eecccccccHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHhC-
Confidence 2221110 000 000 01122211111 11222221 11112222 2333467899999887
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee-eecCCCCCchhhHhhhcCChhhHH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ-ARGGCACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~-v~~G~~~~~~~~~~~l~~~~~~~~ 478 (625)
|+++++.. ....+++.+.+ +..... .-+..-....+.+.|.+ .||. ++.|
T Consensus 288 g~~~~~~~-~s~t~~v~~~~-~~~~~~------~~~~~~~~~~~~~~L~e-~GI~~ir~~-------------------- 338 (370)
T TIGR02539 288 GFIQLGQK-PKEHDLVKFET-PGFHEI------AQKHKRRGYFLYEELKK-RGIHGIRSG-------------------- 338 (370)
T ss_pred CcEEEccC-CCcCceEEEEC-CchhHH------hhhhccccHHHHHHHHh-CCCccccCC--------------------
Confidence 78876432 12344554433 211000 00000123468888865 6996 5421
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||++. ..+++|+++++++|++++.+
T Consensus 339 -------------~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 339 -------------QTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred -------------cceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 1368999983 46999999999999988654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=237.93 Aligned_cols=330 Identities=16% Similarity=0.130 Sum_probs=221.5
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYG-NTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~-n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
|||+++.++..+.+.+++.++....-. ..|...+....+..+.++++++.+++++|++ + .++|+ +|+++++. +..
T Consensus 14 YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-~-~l~~~-sG~~a~~~-~~~ 89 (370)
T PRK05937 14 FLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-E-AFIVP-SGYMANLG-LCA 89 (370)
T ss_pred ccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-e-EEEEC-ChHHHHHH-HHH
Confidence 999999999888888888776543300 1222222222337789999999999999995 2 47776 78887654 333
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhC-CCCeEE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAA-KRPMLG 237 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~-~~~~lv 237 (625)
.+ .++++ .|++...+|.++..+++......+.++ ..|+++|+++|+..... +.+.+|
T Consensus 90 ~~---------------~~~~d--~ii~d~~~H~sv~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v 147 (370)
T PRK05937 90 HL---------------SSVTD--YVLWDEQVHISVVYSLSVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFI 147 (370)
T ss_pred Hh---------------CCCCC--EEEEEhhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEE
Confidence 32 13455 588889999999999887644333343 46899999999742111 245688
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC----CCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR----SRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~----~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
++++++|++|.+.|+++|+++|+++|+++++|+||+.|..+.+.. .+.....++++.|++|++| |.|.|+++.++
T Consensus 148 ~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~~vl~~~~ 226 (370)
T PRK05937 148 FVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGAALLSSSE 226 (370)
T ss_pred EEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCceEEEcCHH
Confidence 899999999999999999999999999999999999998877763 2221233466788899987 66667665543
Q ss_pred cccccC-CCCCcccCCceEEeeccccccccccccchhhhhcCCChhH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLG-SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~-~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
....+. ...| .++..+.++. ...+.++++++ +..+ +.++++.+.+++++
T Consensus 227 ~~~~~~~~~~~--------------------------~~~s~~~~~~~~~a~~aal~~l--~~~~-~~~~~~l~~l~~~l 277 (370)
T PRK05937 227 VKQDLMLNSPP--------------------------LRYSTGLPPHLLISIQVAYDFL--SQEG-ELARKQLFRLKEYF 277 (370)
T ss_pred HHHHHHHhCCC--------------------------CeecCCCCHHHHHHHHHHHHHH--HhCc-HHHHHHHHHHHHHH
Confidence 221110 0111 1122333322 22234566665 3345 45678888899999
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
.+.|.... + ..+..+.+ +. .....+.+.|. ++||.++..|..
T Consensus 278 ~~~l~~~~------~-----~~~~~i~~-~~---------------~~~~~~~~~L~-~~gi~v~~~~~~---------- 319 (370)
T PRK05937 278 AQKFSSAA------P-----GCVQPIFL-PG---------------ISEQELYSKLV-ETGIRVGVVCFP---------- 319 (370)
T ss_pred HHhcCCCC------C-----CCEEEEEe-CC---------------hhHHHHHHHHH-HCCeeEEeeCCC----------
Confidence 88875421 1 11222333 21 12457777774 479988743321
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++|||+++++|++|+++++++|++++.+.
T Consensus 320 --------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 320 --------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred --------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 13689999999999999999999999987654
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=238.60 Aligned_cols=357 Identities=20% Similarity=0.209 Sum_probs=231.1
Q ss_pred cccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc
Q 043646 35 TCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS 113 (625)
Q Consensus 35 ~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~ 113 (625)
.++.+.++..+|+. .+.++.++++++.+......+.+| + |+.+-.+++.+..++..+..... |+....+
T Consensus 2 ~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P---~---~~~~~~~~~~~~~i~~~~l~~~~----n~n~~~~ 71 (373)
T PF00282_consen 2 GELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHP---R---FFGFVPGGPSPASILADLLASAL----NQNGFTW 71 (373)
T ss_dssp TSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTST---T---BESSSHT--CHHHHHHHHHHHHH----T-BTTST
T ss_pred hhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCCh---h---HhhhccCCccHHHHHHHHHHhhh----ccccccc
Confidence 34566777787777 778999999998876554445544 3 34444445555555554444332 3333345
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCC------CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQA------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG 187 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~ 187 (625)
..++..++++.++.+++++++|.+.+ ...+||++||.+++..+..+.....+.... .+....++++|+++
T Consensus 72 ~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~----~~~~~~~~~~i~~s 147 (373)
T PF00282_consen 72 EASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKA----KGVEEIPKPVIYVS 147 (373)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHH----HTTTHCSSEEEEEE
T ss_pred ccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhh----cccccccccccccc
Confidence 56788899999999999999999821 246888788888888887765322111000 11111355789999
Q ss_pred CCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC-CeEEEEecccCccccccCHHHHHHHHHHcCCEE
Q 043646 188 PYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR-PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFA 266 (625)
Q Consensus 188 ~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~-~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~v 266 (625)
...|+|+.++++..|..++.||+++++.+|+++|+++|.+....+. |.+|+.+.+++.||.++|+++|+++|+++++|+
T Consensus 148 ~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wl 227 (373)
T PF00282_consen 148 EQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWL 227 (373)
T ss_dssp TTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EE
T ss_pred cccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceee
Confidence 9999999999999999999999999999999999999986544443 558999999999999999999999999999999
Q ss_pred EEeccCcCCCcc-ccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceEEeeccccccc
Q 043646 267 CFDFAASGPYVK-INLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 267 ivD~A~~~g~~~-id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~ 341 (625)
|||+|.+....- ...+.+ +.+.+|++++++|||++.|.++|+++++++....... .+.+.+... ...+
T Consensus 228 HVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~-------~~~~ 300 (373)
T PF00282_consen 228 HVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDD-------RESD 300 (373)
T ss_dssp EEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S--------SSS-
T ss_pred eecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccc-------cccc
Confidence 999998763321 112221 3457899999999999999999999999865211111 111111000 0000
Q ss_pred cccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEe
Q 043646 342 TLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLV 419 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~ 419 (625)
.. .+. ...--.++-...++ +-..+.. ....|+.++.++..++++++.++|++.++++++.+. ..++++|..
T Consensus 301 ~~-~~~-~~~tl~~SR~~~alk~w~~l~~--~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~---~~~~vcFr~ 372 (373)
T PF00282_consen 301 ES-YDY-GDYTLQGSRRFRALKLWATLKS--LGREGYRERIRRCIELARYLADRLRKDPRFELVNEP---DLNIVCFRY 372 (373)
T ss_dssp GG-GCE-EEGSSSSSGHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTT---SSSEEEEEE
T ss_pred cc-ccc-ccccccccccchHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC---CceEEEEEe
Confidence 00 000 00000112111111 1111222 245667788888889999999999999999998854 789999975
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=234.99 Aligned_cols=345 Identities=15% Similarity=0.080 Sum_probs=243.1
Q ss_pred ceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal 153 (625)
.++.|..+.. .+.|+.+.+++.+.+..- +. .|....+..++.+.+.+++.+.+|.+ ++++|++| +|++++|
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~----~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt-~Ga~~al 102 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEG----GT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVT-AGAKEAL 102 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcc----cC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEe-CCHHHHH
Confidence 3555555444 467888999998877531 11 12234456788888888888888743 44359998 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC---CCCCCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD---DNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~---~~~~ld~~~L~~~l~~~~~ 230 (625)
..++.++ ++|||+ |+++.+.|+++....+..|++++.++++ .++.+|+++|+++++
T Consensus 103 ~~~~~a~---------------~~pGDe--Vlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~---- 161 (393)
T COG0436 103 FLAFLAL---------------LNPGDE--VLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT---- 161 (393)
T ss_pred HHHHHHh---------------cCCCCE--EEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC----
Confidence 9998888 689997 9999999999998999999999999975 267999999999999
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC-Cc---cccCCCCCCC-CCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV---KINLRSRNID-GYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g-~~---~id~~~~~~~-~~D~v~~S~hK~lgg 302 (625)
++||++++++|+||||.+.+ +++|+++|++||++++.|+++.-- +. +..+-..... ..-+.+.|++|.++.
T Consensus 162 -~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~m 240 (393)
T COG0436 162 -PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGM 240 (393)
T ss_pred -ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccc
Confidence 68999999999999999977 678999999999999999995421 11 1111111100 123555689999984
Q ss_pred CC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--cCHH
Q 043646 303 PG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY--IGYE 378 (625)
Q Consensus 303 p~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~--~g~~ 378 (625)
++ .+|+++++ +.+.+ .+. .+......+.+.+.+.+ +...+.... ...+
T Consensus 241 tGwRvG~~v~~~~~l~~--~~~------------------------~~~~~~~~~~~~~~Q~a--a~~aL~~~~~~~~~~ 292 (393)
T COG0436 241 TGWRIGWVVGPPEELIA--ALR------------------------KLKSYLTSCAPTPAQYA--AIAALNGPQSDEVVE 292 (393)
T ss_pred cccceeEeecChHHHHH--HHH------------------------HHHHhcccCCCHHHHHH--HHHHhcCccchHHHH
Confidence 43 39999998 55521 110 00122233445555532 222221111 2344
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 379 VIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 379 ~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
..++..+..++.+.+.|.+++|+.+..+. .++.+.|.-.+. ..+..+++..|+++.||.+.+|
T Consensus 293 ~~~~~~~~rrd~l~~~l~~~~g~~~~~~p---~Ga~Y~~~~i~~--------------~~d~~~f~~~Ll~~~gV~v~PG 355 (393)
T COG0436 293 EMREEYRERRDLLVEALNEIGGLSVVKPP---EGAFYLFPKIPE--------------LLDSEEFAKKLLEEAGVAVVPG 355 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeeeccCC---CeeEEEEeecCC--------------CCCHHHHHHHHHHhCCEEEecc
Confidence 55566777899999999999889988732 234444443332 1457789999999999999999
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..|+.+. ..+++|||+.. +.++++..++.|++.+..
T Consensus 356 ~~Fg~~~--------------------------g~~~vRis~~~--~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 356 SGFGEPP--------------------------GEGYVRLSLAT--SEETLEEALRRLARFLAE 391 (393)
T ss_pred cccCCCC--------------------------CCCeEEEEEec--CHHHHHHHHHHHHHHHHh
Confidence 9887321 24899999973 558888888888877654
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=225.24 Aligned_cols=377 Identities=13% Similarity=0.097 Sum_probs=269.2
Q ss_pred eEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCC--hHHHHHH
Q 043646 78 LTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGA--GTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~s--Gttaal~ 154 (625)
.+|+.+-..+- ..+.|.+++.+.+..+.+..+......| ......++++.+|++++-+.. ++|++. ...+.|.
T Consensus 174 tVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG--~s~~hv~LE~eLA~LHqK~aA--LlFsSCfVANDstLf 249 (570)
T KOG1360|consen 174 TVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISG--HSKHHVRLEAELADLHQKEAA--LLFSSCFVANDSTLF 249 (570)
T ss_pred EEEecCccccccCChHHHHHHHHHHHHcCCCcCCccccCC--CCchhhhHHHHHHHHhcCcce--eeeeeeeeccchHHH
Confidence 35554433332 2458999999988776544443222222 345566788999999997654 788631 2334677
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.+...+ ||.+ |+....+|.|++.++|..+++-.....+ |+++|+++|++ .....|
T Consensus 250 tLak~l-----------------pgce--i~SD~gNHASMI~GIrns~v~K~IFrHN-----D~~hL~~lL~~-~~~svP 304 (570)
T KOG1360|consen 250 TLAKKL-----------------PGCE--IFSDEGNHASMIQGIRNSRVPKHIFRHN-----DLDHLEQLLQS-SPKSVP 304 (570)
T ss_pred HHHHHC-----------------CCcE--EeccccchHHHHHHhhhcCCcceeeccC-----CHHHHHHHHHh-CCCCCC
Confidence 776654 6663 8888999999999999999876666654 89999999985 223468
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK-----INLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
|+|.|..+++++|.++|+++|++++|+||++.++|++|++|... +.-+++.++.+|+++.+..|.||+-+ |++
T Consensus 305 KivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG--GYI 382 (570)
T KOG1360|consen 305 KIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG--GYI 382 (570)
T ss_pred ceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc--cee
Confidence 99999999999999999999999999999999999999987653 23334445678999999999999766 788
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC--hhH-HHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT--PQI-VQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt--~~~-~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
.....+++ .++.+ ..+|...| |+. +.-+..++.++ +..+|... +...+.
T Consensus 383 Aat~~LvD--miRSy------------------------AaGFIFTTSLPP~vl~GAleaVr~l-k~~eg~~l-R~~hqr 434 (570)
T KOG1360|consen 383 AATRKLVD--MIRSY------------------------AAGFIFTTSLPPMVLAGALEAVRIL-KSEEGRVL-RRQHQR 434 (570)
T ss_pred hhhhhHHH--HHHHh------------------------cCceEEecCCChHHHHhHHHHHHHH-hhhhhHHH-HHHHHH
Confidence 77777743 22111 12222222 333 33233444443 34455543 444555
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
...|+++.|.++ |+-|+..+ ..|+-..+-+.. -...+++.|..+|||+|..-.+++.+.|
T Consensus 435 nv~~~kq~l~~~-GiPVi~~p----SHIiPv~vgda~---------------l~~~~sd~Li~~h~iYvQaINyPTV~rG 494 (570)
T KOG1360|consen 435 NVKYVKQLLMEL-GIPVIPNP----SHIIPVRVGDAA---------------LAKQASDILISKHNIYVQAINYPTVARG 494 (570)
T ss_pred HHHHHHHHHHHc-CCcccCCC----cceeeeeccCHH---------------HHHHHHHHHHHhcCeEEEeccCCccccc
Confidence 688999999886 77666543 245555553321 1457888899999999998777665543
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCcc-cccccccccccccc
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYH-FNVKAGNWCSSQKA 545 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~-~~~~~~~w~~~~~~ 545 (625)
...+||.+.+.+|++.++.|+++|..+..+ +.|.. -+|.+..+.||...
T Consensus 495 --------------------------~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~----v~l~~~~~~s~~~c~fc~~~ 544 (570)
T KOG1360|consen 495 --------------------------TERLRIAPTPHHTPQMMNILVNALLDVWNE----VGLPRVRDWSSAGCNFCVGE 544 (570)
T ss_pred --------------------------ceeeecCCCCCCCHHHHHHHHHHHHHHHHH----cCCcccCCccccccccccCc
Confidence 367999999999999999999999976555 55555 68999999999988
Q ss_pred -hhhhhhhhcccccCCcch
Q 043646 546 -IKDLIDKETNNNINNPLA 563 (625)
Q Consensus 546 -~~~~~~~~~~~~~~~~~~ 563 (625)
.++++|++|.++|+++-+
T Consensus 545 ~~hf~~ls~~e~~~~~~~~ 563 (570)
T KOG1360|consen 545 LWHFEVLSETEDSYFPNVR 563 (570)
T ss_pred ccccccccccccccCCCcc
Confidence 899999999998888744
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=249.02 Aligned_cols=391 Identities=17% Similarity=0.134 Sum_probs=250.4
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH-HH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS-YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI-KR 155 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~-~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal-~~ 155 (625)
.+.|.. .+....+.+...+... +.+.+-|...- ..+.+..+++.++.+++++++|.+ .+.+..+|++.+- ..
T Consensus 501 ~i~lGs-ct~~~~p~~~~~~~~~--~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d---~~sl~~~~ga~ge~ag 574 (954)
T PRK05367 501 MIPLGS-CTMKLNAAAEMIPITW--PEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD---AVSLQPNAGAQGEYAG 574 (954)
T ss_pred eeeCCc-CCCcCCHHHHHHHHhC--ccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC---CEEECccHHHHHHHHH
Confidence 455555 4455555555555432 22222222111 245567899999999999999986 3455544444332 33
Q ss_pred HHHHhcccccchhhhhhhhccCCCC--ceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEE--RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.+... ..++|+ +.+|+++...|+++..++...|++++.++++.+|.+|+++|+++++.+ ..+
T Consensus 575 L~a~r~~------------~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~--~~~ 640 (954)
T PRK05367 575 LLAIRAY------------HESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEH--ADN 640 (954)
T ss_pred HHHHHHH------------hhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhcc--CCC
Confidence 3222210 023443 457999999999999999999999999999988999999999999731 135
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC-CCCCCCCCcEEEEcCCCCCCCCCC-----ce
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL-RSRNIDGYDAIFLATHKFLGGPGT-----PG 307 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~-~~~~~~~~D~v~~S~hK~lggp~g-----~G 307 (625)
+.+|+++++++..+...|+++|+++||++|+++++|+|+..+...+.- ..+ |+|++++++||||+.|.| +|
T Consensus 641 la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~---GADi~~~s~HK~f~~P~G~GGPg~G 717 (954)
T PRK05367 641 LAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDI---GADVSHLNLHKTFCIPHGGGGPGVG 717 (954)
T ss_pred eEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhc---CCCEEEecCcccCCCCcCCCCCceE
Confidence 788889988877444589999999999999999999999866555432 233 899999999999976654 66
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHH---HHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIK---KQE 384 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~---~~~ 384 (625)
++++++.+ .|...|+.... .. +. . ..... .+.++.+...+...+......|.+.++ ++.
T Consensus 718 ~l~vr~~l------~p~lpg~~v~~--~~----~~----~-~~g~v-~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~ 779 (954)
T PRK05367 718 PIGVKAHL------APFLPGHPVQI--AG----GE----T-GIGAV-SAAPFGSASILPISWMYIRMMGAEGLRQATEVA 779 (954)
T ss_pred EEeecccc------cccCCCCccCc--CC----CC----C-CcCcc-hhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 99998655 23444432100 00 00 0 00000 122222222221122222456666554 445
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 385 DVYIESALGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
..+++|+.++|.+...+...++.. -.+-.++.+...+ ...++...++++.|.+ +||....-.+.
T Consensus 780 ~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~------------~~~g~~~~di~krL~d-~G~~~~t~~~p-- 844 (954)
T PRK05367 780 ILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLK------------ESTGITVDDIAKRLID-YGFHAPTMSFP-- 844 (954)
T ss_pred HHHHHHHHHHHHhhcCccccCCCCCcccceEEEeeccc------------ccCCCCHHHHHHHHHH-CCCeEeecCCc--
Confidence 589999999997753333333211 0112233332111 1123456789999955 89998652211
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCcccccccccccccc
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQ 543 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~~w~~~~ 543 (625)
.++.+||++..+++++|+|+|+++|+.+..+..+ +.+|+|...+
T Consensus 845 ----------------------------v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~--------~~~~~~~~~~ 888 (954)
T PRK05367 845 ----------------------------VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE--------VEAGEWPAED 888 (954)
T ss_pred ----------------------------cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH--------hhcCCCCCCc
Confidence 1488999999999999999999999999988655 8899999998
Q ss_pred cchh------hhhhh-hcccccCC
Q 043646 544 KAIK------DLIDK-ETNNNINN 560 (625)
Q Consensus 544 ~~~~------~~~~~-~~~~~~~~ 560 (625)
+.+| .+++. ||-..|+.
T Consensus 889 ~~~~~ap~~~~~~~~~~w~~~y~r 912 (954)
T PRK05367 889 NPLKNAPHTAADLVADEWDHPYSR 912 (954)
T ss_pred chhhhCCCCHHHhccCCCCCCCCH
Confidence 8888 33443 67544443
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=234.52 Aligned_cols=345 Identities=15% Similarity=0.072 Sum_probs=232.4
Q ss_pred CceEeccCCCCC--cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG--RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~--~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGtta 151 (625)
.+.++|+++... ++|+.+.+++.+.+... +...|....+..++.+.+.+++++.+|.+ ++++|++| +|+++
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it-~Ga~~ 113 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERG----GVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIIT-PGTQG 113 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcC----CCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEe-CCcHH
Confidence 456788876654 35567888887766321 11112222234667788888888888863 31479998 89999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-----CCCCCHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-----NGLLDIEALRSQLE 226 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-----~~~ld~~~L~~~l~ 226 (625)
++..++.++ +++||+ |++..+.|+.+...++..|++++.++++. +..+|+++|+++++
T Consensus 114 al~~~~~~l---------------~~~Gd~--Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~ 176 (405)
T PRK06207 114 ALFLAVAAT---------------VARGDK--VAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFK 176 (405)
T ss_pred HHHHHHHHh---------------cCCCCE--EEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhh
Confidence 999998887 578986 89999999998888888999999999862 46799999999987
Q ss_pred HhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC-CCCcEEEEcCCC
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI-DGYDAIFLATHK 298 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~-~~~D~v~~S~hK 298 (625)
+++++|++++|+||||.+.+ +++|+++|++||+++++|++++.-. ....+..+.. ..--+++.|++|
T Consensus 177 -----~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK 251 (405)
T PRK06207 177 -----AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSK 251 (405)
T ss_pred -----hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchh
Confidence 47899999999999999987 6778889999999999999966321 1112221110 011267789999
Q ss_pred CCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcC-
Q 043646 299 FLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIG- 376 (625)
Q Consensus 299 ~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g- 376 (625)
.|+.|+ .+|+++.++++. +.+... ......+.+.+.+ .++..++.+..+
T Consensus 252 ~~~lpGlRiG~ii~~~~l~--~~~~~~------------------------~~~~~~~~~~~~q---~a~~~~l~~~~~~ 302 (405)
T PRK06207 252 TESLSGYRLGVAFGSPAII--DRMEKL------------------------QAIVSLRAAGYSQ---AVLRTWFSEPDGW 302 (405)
T ss_pred hccCcccceEEEEcCHHHH--HHHHHH------------------------HhHhccCCCHHHH---HHHHHHHhCcHHH
Confidence 998554 389999887762 221100 0001112222222 222222222111
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee
Q 043646 377 YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR 456 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~ 456 (625)
.+...++.+..++.+.+.|.+++++++..+ .++.+.|...+.. .++..++++.|.+++||.++
T Consensus 303 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~gg~fl~~~l~~~-------------~~~~~~~~~~l~~~~gV~v~ 365 (405)
T PRK06207 303 MKDRIARHQAIRDDLLRVLRGVEGVFVRAP----QAGSYLFPRLPRL-------------AVSLHDFVKILRLQAGVIVT 365 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceecCC----CeeEEEEEeCccc-------------CCCHHHHHHHHHHhcCEEEe
Confidence 344445556667888888888777776654 3456666555421 13456788888766899999
Q ss_pred cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 457 GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 457 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+|..|... .++++||+++. +.++++..++.|.+++++
T Consensus 366 pG~~F~~~---------------------------~~~~~Ris~~~--~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 366 PGTEFSPH---------------------------TADSIRLNFSQ--DHAAAVAAAERIAQLIER 402 (405)
T ss_pred CchHhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 98766411 24899999984 678899988888887654
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=213.03 Aligned_cols=350 Identities=16% Similarity=0.132 Sum_probs=260.5
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
-.+..|.+++.. |..+ +.++....+++++++-++..|.+..+...++.|+|+.+ +...+..+
T Consensus 27 nl~~~V~~A~~~--------~~lg--h~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g-~E~al~N~------- 88 (385)
T KOG2862|consen 27 NLSGRVQEAMSR--------PSLG--HMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSG-WEAALVNL------- 88 (385)
T ss_pred CCCHHHHHhhcC--------Cccc--cCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcch-HHHHHHhh-------
Confidence 356677777643 2221 25677889999999999999999877667787776665 44443333
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
+.|||+ |++....-.+- ....+..|++|..|+.+..+.+.++.+++++.+ .++++|+++|..+.
T Consensus 89 --------lePgd~--vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsq----h~p~~vfv~hgdsS 154 (385)
T KOG2862|consen 89 --------LEPGDN--VLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQ----HKPKAVFVTHGDSS 154 (385)
T ss_pred --------cCCCCe--EEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHh----cCCceEEEEecCcc
Confidence 689997 44433222222 245677899999999988889999999999996 58999999999999
Q ss_pred cccccC-HHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 246 TGIYSD-TRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 246 TG~~~~-l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
||+..| ++.+.++||+|+++++||.+++.|..++.|++| ++|+.....+|.+++|.|++.+..++.. +..++..
T Consensus 155 TgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDew---gVDvaytgSQKaL~aP~GLsiisfS~ka--~~~~~~r 229 (385)
T KOG2862|consen 155 TGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEW---GVDVAYTGSQKALGAPAGLSIISFSDKA--LEAIRDR 229 (385)
T ss_pred ccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhh---cccEEEecchhhcCCCCCcceeecCHHH--HHHHhhc
Confidence 999999 677899999999999999999999999999999 9999999999999999999998888776 2222111
Q ss_pred ccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~ 402 (625)
..+-- ..|.+ +..-...+..+.+.+....|+++..+ +++|++.+. ..|.+++.++.++++++++..|.++ |++
T Consensus 230 K~~~~-~~yFd-~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~--eeGL~~~~~rH~e~s~~l~~~l~~~-GLq 304 (385)
T KOG2862|consen 230 KTKPV-SFYFD-ILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIA--EEGLENSWRRHREMSKWLKLSLEAL-GLQ 304 (385)
T ss_pred cCCce-EEEEe-HHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh-Ccc
Confidence 11000 01110 00000111122234556678877665 478888874 5699999999999999999999987 888
Q ss_pred EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHH
Q 043646 403 VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRS 482 (625)
Q Consensus 403 v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~ 482 (625)
........+++.++-...+. +++..+++.++.+.+++.+.+|....
T Consensus 305 ~fv~~e~~rlptvttv~vp~--------------gvDw~dVv~~~~~~~~vei~gglg~~-------------------- 350 (385)
T KOG2862|consen 305 LFVVDEELRLPTVTTVKVPY--------------GVDWKDVVAYAMSHYVVEIGGGLGPT-------------------- 350 (385)
T ss_pred ceecChhhccCcceeeecCC--------------CCCHHHHHHHHHHhcCEEeccccCCC--------------------
Confidence 77665567888777766553 46788999999998899987665432
Q ss_pred HHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Q 043646 483 AIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 483 ~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+..+||.+ +...+.+-|+..++.|+..+++
T Consensus 351 ---------~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 351 ---------VGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ---------cccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 247899997 6667889999999999887765
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-24 Score=226.93 Aligned_cols=356 Identities=13% Similarity=0.092 Sum_probs=238.4
Q ss_pred hHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 043646 51 SEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNY 129 (625)
Q Consensus 51 ~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
+++.++.+++.+.... ..+|.+..+.-. +..+.+ +......-.+.|... +.++..+.++..++.+|
T Consensus 75 ~~~~l~~~~~~~~~~~-----------~~~~gYp~n~~~d~s~l~~-~l~~~~nN~Gdp~~~-s~~~~~s~~~E~~Vi~w 141 (470)
T PLN02263 75 MASVLARYRKTLVERT-----------KHHLGYPYNLDFDYGALGQ-LQHFSINNLGDPFIE-SNYGVHSRQFEVGVLDW 141 (470)
T ss_pred HHHHHHHHHHHHHhcc-----------cceeCCCCcccCChhhHHH-HHHhhccCCCCcccc-CCcchhHHHHHHHHHHH
Confidence 4777888888775431 113333222222 223333 333333333555442 22233678999999999
Q ss_pred HHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEE
Q 043646 130 IKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEI 208 (625)
Q Consensus 130 ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v 208 (625)
+++++|.++++ ..++|++||.++|..+..++.. .+. .+++++...|+|+.++.+..|.+++.|
T Consensus 142 la~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~--------------~~~--~vvy~S~~aH~Sv~KAa~llgi~~~~V 205 (470)
T PLN02263 142 FARLWEIEKNEYWGYITNCGTEGNLHGILVGREV--------------FPD--GILYASRESHYSVFKAARMYRMECVKV 205 (470)
T ss_pred HHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh--------------cCC--cEEEEcCCccHHHHHHHHhcCCcceEe
Confidence 99999997642 4678878888899988777631 122 269999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCC-----EEEEeccCcCCCcccc--C
Q 043646 209 GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGG-----FACFDFAASGPYVKIN--L 281 (625)
Q Consensus 209 ~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~-----~vivD~A~~~g~~~id--~ 281 (625)
|+++++.+|+++|+++|.++ ..+|.+|+.+.+++++|.++|+++|+++|+++|+ |+|||+|.++...++- .
T Consensus 206 p~d~~g~mD~~aL~~aI~~d--~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 206 DTLVSGEIDCADFKAKLLAN--KDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred ccCCCCcCcHHHHHHHHHhC--CCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccc
Confidence 99999999999999999853 1358899999999999999999999999999997 9999999876555321 1
Q ss_pred CCC-CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 282 RSR-NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 282 ~~~-~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
..+ ....+|++++++|||++.|.++|++++++... ..+.. ...|+..... -..|+-+..
T Consensus 284 ~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~--~~~~~-----------------~~~Yl~~~d~-ti~gSR~g~ 343 (470)
T PLN02263 284 PKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHI--NVLSS-----------------NVEYLASRDA-TIMGSRNGH 343 (470)
T ss_pred cccCCCcCccEEEECCccccCCCcCEEEEEEehhhH--hhhcc-----------------ChHhhCCCCC-CcCCCCCcH
Confidence 111 11259999999999999999999999997652 11100 0011110000 012232221
Q ss_pred HH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 361 QM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 361 ~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
.. +-+.+... ...|+..+.++..++++++.++|+++ ++.++.++ ...++.|....+
T Consensus 344 ~al~lW~~L~~~--G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p---~s~~V~f~~p~~---------------- 401 (470)
T PLN02263 344 APIFLWYTLNRK--GYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNE---LSSTVVFERPKD---------------- 401 (470)
T ss_pred HHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCC---CceEEEEecCch----------------
Confidence 11 11222221 44567777888888999999999988 66655432 356666653211
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+. . . .|-++.. .++.++|.+.+..+.+.+|.|++.|++
T Consensus 402 ---~~---~-~-~gW~L~~----------------------------------~~~~~Hivvmphv~~~~id~fi~DL~~ 439 (470)
T PLN02263 402 ---EE---F-V-RRWQLAC----------------------------------QGNIAHVVVMPSVTIEKLDYFLKELVE 439 (470)
T ss_pred ---HH---h-h-cceEEcc----------------------------------CCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 11 1 1 2444431 135699999888899999999999988
Q ss_pred HHH
Q 043646 519 IAA 521 (625)
Q Consensus 519 ~~~ 521 (625)
...
T Consensus 440 ~~~ 442 (470)
T PLN02263 440 KRS 442 (470)
T ss_pred HHh
Confidence 755
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=231.69 Aligned_cols=316 Identities=16% Similarity=0.135 Sum_probs=217.8
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
++.|+.|.+++.+....+ + ...++.+++++++++++|++ ++++| +|+|++++.++.++
T Consensus 23 s~~~~~v~~a~~~~~~~~----~--------~~~~~~~~~~~~~a~~~g~~---~~~~~-~g~t~al~~al~al------ 80 (363)
T TIGR01437 23 STVSDEVADAQKRGAQNY----F--------EIKELVNKTGEYIANLLGVE---DAVIV-SSASAGIAQSVAAV------ 80 (363)
T ss_pred CCCCHHHHHHHHHHHhcC----C--------CHHHHHHHHHHHHHHhhCCC---eEEEE-cCHHHHHHHHHHHH------
Confidence 457889999998876322 0 14577899999999999975 56888 67888888887776
Q ss_pred hhhhhhhhccCCCCc-------------eEEEEcCCCCchh----HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh
Q 043646 167 IMRDKLITSLRDEER-------------WVVFLGPYEHHSN----LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK 229 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~-------------~~Vlv~~~~h~s~----~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~ 229 (625)
+++||+ ..|+++.+.+..+ ....+..|+++++++.+ +.+|+++++++|+
T Consensus 81 ---------~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~--~~~d~~~le~ai~--- 146 (363)
T TIGR01437 81 ---------ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA--NECSAEQLEAAIT--- 146 (363)
T ss_pred ---------hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC--CCCCHHHHHHhcC---
Confidence 344540 1377765333322 23456689999999864 5699999999998
Q ss_pred hCCCCeEEE-EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceE
Q 043646 230 AAKRPMLGS-FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 230 ~~~~~~lv~-~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
++|++++ +++++|++|.+.|+++|+++||+||+++++|+||+.... ....+ ++|++++|+||+++||. .|+
T Consensus 147 --~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~---g~D~~~~S~~K~l~gp~-~G~ 218 (363)
T TIGR01437 147 --EKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRL---GADLVIYSGAKAIEGPT-SGL 218 (363)
T ss_pred --hhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHc---CCCEEEEeCCcccCCCc-eEE
Confidence 5788655 567789999999999999999999999999999873210 01122 68999999999999998 699
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
++.+++.. ..+.+...+. ...++.|+.++.++ .++++++. ..+.+.+.++.+. +
T Consensus 219 l~~~~~~i--~~~~~~~~~~--------------------~~~~~~~~~~~~gl-~aAl~~~~--~~~~~~~~~~~~~-~ 272 (363)
T TIGR01437 219 VLGKKKYI--EWVKLQSKGI--------------------GRAMKVGKENILGL-TAALEQYL--STGKESGAEMVAK-L 272 (363)
T ss_pred EEEcHHHH--HHHHhccCCC--------------------cceeccCHHHHHHH-HHHHHHHH--ccCcccHHHHHHH-H
Confidence 88877663 3332322221 12234556555444 34566653 4566666666654 6
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCc----ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC--eeeecCCCCC
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQ----AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG--IQARGGCACA 462 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~----~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g--I~v~~G~~~~ 462 (625)
+++.++|.++|+++++.+.+.... ..++|.. ++.++++.++.+.|.+ ++ |.+|. ++.
T Consensus 273 ~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~--------------~~~g~~~~~l~~~L~~-~~~~I~~r~--~~~ 335 (363)
T TIGR01437 273 TPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDE--------------SELGMTAADVVQALRQ-GEPAIYTRG--YKA 335 (363)
T ss_pred HHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEec--------------cCCCCCHHHHHHHHhc-CCCCEEEee--eee
Confidence 689999999999998854221111 1122222 1235678899999954 46 77763 110
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+.+|+++.. ++++|++.++++|+++
T Consensus 336 -----------------------------~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 336 -----------------------------NEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred -----------------------------cCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 24789999975 5699999999999876
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-25 Score=235.01 Aligned_cols=328 Identities=15% Similarity=0.129 Sum_probs=222.4
Q ss_pred chHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 89 SLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
.++.+.+++.+.+..+ ++++.+. +.. +..+...++++.+++++|.+ + .++|+ +|+ .++..++.++
T Consensus 53 ~~~~v~~~~~~~~~~~~~~~~~s~-~~~--G~~~~~~~le~~ia~~~g~~-~-~ii~~-~~~-~a~~~~~~~l------- 118 (393)
T TIGR01822 53 SHPDLIQAAKDALDEHGFGMSSVR-FIC--GTQDIHKELEAKIAAFLGTE-D-TILYA-SCF-DANGGLFETL------- 118 (393)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcC-ccc--CChHHHHHHHHHHHHHhCCC-c-EEEEC-chH-HHHHHHHHHh-------
Confidence 3668888888888653 4444432 222 23567788999999999984 2 45553 454 6666776665
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCeEEEEecccCcc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPMLGSFSACSNVT 246 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~T 246 (625)
+++||. |++++.+|+++...++..+++.+.++ .+|+++|++++++... ..++++|++++++|+|
T Consensus 119 --------~~~gd~--vi~~~~~~~s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~t 183 (393)
T TIGR01822 119 --------LGAEDA--IISDALNHASIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMD 183 (393)
T ss_pred --------CCCCCE--EEEeccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCC
Confidence 578885 99999999999988888887765543 3689999999974211 1278999999999999
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCC----CC-CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC
Q 043646 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRS----RN-IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS 321 (625)
Q Consensus 247 G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~----~~-~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~ 321 (625)
|.+.|+++|+++|++||+++++|++|+.|........ .+ ..++|+++.|+||+++|+. .|++++++++.. .+
T Consensus 184 G~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r-~G~~~~~~~~~~--~l 260 (393)
T TIGR01822 184 GVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGAS-GGFTTARKEVVE--LL 260 (393)
T ss_pred CCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCC-cEEEEeCHHHHH--HH
Confidence 9999999999999999999999999987765322110 11 1257999999999998776 499998877632 22
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
.+... . . ...++.+... .+.++++.+ + ..+.+.++.+.+++++.+.|.++
T Consensus 261 ~~~~~---~-------------------~-~~~~~~~~~~~~a~~~al~~~--~--~~~~~~~~~~~~~~~l~~~L~~~- 312 (393)
T TIGR01822 261 RQRSR---P-------------------Y-LFSNSLPPAVVGASIKVLEML--E--ASNELRDRLWANTRYFRERMEAA- 312 (393)
T ss_pred HHhCc---c-------------------c-eecCCCCHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHHHHHHHHHHc-
Confidence 11000 0 0 0112322222 223334433 1 34567788888999999999875
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLE 479 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~ 479 (625)
++++..+ ..+++.+...+. ....++++.|.+ .||.+. +..+. ....
T Consensus 313 g~~~~~~----~~~~~~i~~~~~---------------~~~~~l~~~L~~-~gI~v~-~~~~~--~~~~----------- 358 (393)
T TIGR01822 313 GFDIKPA----DHPIIPVMLYDA---------------VLAQRFARRLLE-EGIYVT-GFFYP--VVPK----------- 358 (393)
T ss_pred CCCCCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCeeEe-eeCCC--CCCC-----------
Confidence 6665433 235555443221 124578888866 599997 33221 0000
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+|+|+++++|++|+++++++|+++..+
T Consensus 359 ------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 359 ------------GQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred ------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1256999999999999999999999988654
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-25 Score=246.25 Aligned_cols=361 Identities=16% Similarity=0.130 Sum_probs=244.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
.+.++.+.+.++++++++++|.+.. .+.-++|+.+.+..++...... . . -....+.+|+++...|+++
T Consensus 537 ~sQG~lq~i~elq~~l~eLtGmd~~--Sl~p~sGA~gE~A~Lmair~yh-~----~-----~Ge~~r~~vLIp~saHgtN 604 (954)
T PRK12566 537 QAEGYRAMIDELEAWLCAITGFDAI--CMQPNSGAQGEYAGLLAIRRYH-R----S-----RGQSQRDICLIPSSAHGTN 604 (954)
T ss_pred hhcCHHHHHHHHHHHHHHHHCCCeE--eecCCchHHHHHHHHHHHHHHH-H----h-----cCCCCCCEEEecccccccC
Confidence 3567888999999999999999744 2343355555433333322100 0 0 0112244799999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 195 LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...+...|++++.++.+++|.+|+++|++++++. .+++.+|.++++++..+...|+++|++++|++|+++++|+|+..
T Consensus 605 pasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~--~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~ 682 (954)
T PRK12566 605 PASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAA--GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLN 682 (954)
T ss_pred HHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhcc--CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChh
Confidence 8888889999999999989999999999999731 25788889999888877778899999999999999999999998
Q ss_pred CCcccc-CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 275 PYVKIN-LRSRNIDGYDAIFLATHKFLGGPGTPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 275 g~~~id-~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
+...++ ..++ |+|++++++||||++|.|.|..++.. .. .+.+.|+..++..++.. ..+-
T Consensus 683 a~~~l~~Pg~~---GADi~~~s~HKtf~~P~G~GGP~vG~iav--~~~L~pfLp~~P~~d~~--------------G~~~ 743 (954)
T PRK12566 683 AQVGLARPADI---GADVSHMNLHKTFCIPHGGGGPGMGPIGV--RAHLAPFVANHPVVPVE--------------GPDP 743 (954)
T ss_pred hccCCCChhhc---CCCEEEecCCcccCcCccCCCCccchhhh--hhhhhhhccCCCCcCCC--------------CCCC
Confidence 777766 3555 99999999999999887766666554 22 12233444433211100 0000
Q ss_pred cCCCh-----hHHHHHHHHHHHHHHhhcCHHHHHHHH--HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEec-cCCC
Q 043646 353 NGGTP-----QIVQMIRAALAFWVKEYIGYEVIKKQE--DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY-STTN 424 (625)
Q Consensus 353 ~~gt~-----~~~~~~~aal~~~~~~~~g~~~i~~~~--~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~-~~~~ 424 (625)
+.|+. +...++..+..|+ ..+|.+..+.+. ..+++|+.++|.+..++.. .+. ..+ -..-|.+. ...
T Consensus 744 r~ga~S~~~~gsa~~l~~A~~Yi--~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~-~~~-~~~-~~hEfii~~~~l- 817 (954)
T PRK12566 744 NNGAVSAAPWGSASILPISWMYI--AMMGPQLADASEVAILSANYLANQLGGAFPVLY-RGR-NER-VAHECILDLRPL- 817 (954)
T ss_pred CCCceeecccchHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCc-CCC-CCC-eeeEEEEEcccc-
Confidence 12332 1222334455555 567877334344 6689999999976433333 221 111 01112111 111
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
....+.+..++.+.|. ++||....-. + | .++.+||+++.++
T Consensus 818 --------~~~~g~~~~dvakRL~-d~Gihapt~~-f--P---------------------------v~~~LmIepTE~e 858 (954)
T PRK12566 818 --------KAQTGISEEDVAKRLM-DYGFHAPTMS-F--P---------------------------VPGTLMVEPTESE 858 (954)
T ss_pred --------ccccCCCHHHHHHHHH-HCCcEEeEEe-e--c---------------------------cCCEEEEEeeeeC
Confidence 1123456778999998 5899875421 1 1 1488999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcccCcccccccccccccccchh------hhhhhhcccccCCc
Q 043646 505 SNEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIK------DLIDKETNNNINNP 561 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~~w~~~~~~~~------~~~~~~~~~~~~~~ 561 (625)
+++|+|+|+++|+.+.++..+ +++|.|...+++|| .+++.+|-..|+..
T Consensus 859 skeEIDrf~eAL~~I~~e~~~--------v~~g~~~~~~n~l~~apht~~~~~~~w~~~y~r~ 913 (954)
T PRK12566 859 SKAELDRFVEAMLSIRAEIGK--------VQEGNWPAEDNPLKRAPHTLADVTGVWQRPYSIE 913 (954)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------HHcCCCCcccCcccCCCCchHHhhccCCCCcChh
Confidence 999999999999999999766 88999999999988 34677887655554
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.3e-24 Score=228.16 Aligned_cols=344 Identities=13% Similarity=0.026 Sum_probs=231.3
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal 153 (625)
+.++|+.+... ++|+.+.+++.+.+.. +....|....+..++.+.+++++++.+|.. +.++|++| +|++.++
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t-~G~~~~l 102 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLAN----PENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVT-AGSNMAF 102 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEe-CChHHHH
Confidence 46777776654 5678899998876632 111123333445678888999999999974 23478888 7888888
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
..++.++ +++||. |+++.+.|..+...++..|++++.++.+.++.+|+++|+++++ ++
T Consensus 103 ~~~~~~~---------------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~ 160 (389)
T PRK05957 103 MNAILAI---------------TDPGDE--IILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAIT-----PK 160 (389)
T ss_pred HHHHHHh---------------cCCCCE--EEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcC-----cC
Confidence 8887766 478885 8888888888877778889999999998777899999999987 57
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-c---ccCCCC-CCCCCcEEEEcCCCCCCCCC-
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-K---INLRSR-NIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-~---id~~~~-~~~~~D~v~~S~hK~lggp~- 304 (625)
+++|++++++||||.+.| +++|+++|+++|+++++|+++.--.. . ...... ....-.+++.|++|.+|.|+
T Consensus 161 ~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl 240 (389)
T PRK05957 161 TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASW 240 (389)
T ss_pred ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccc
Confidence 999999999999999988 88899999999999999999652111 0 011010 01123467789999997554
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIKKQ 383 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~~~ 383 (625)
.+|++++++++. +.+.... .....+++...+.+ +..++ .+ ....++..++
T Consensus 241 RiG~~~~~~~~~--~~~~~~~------------------------~~~~~~~~~~~q~~--~~~~l-~~~~~~~~~~~~~ 291 (389)
T PRK05957 241 RIGYMVIPIHLL--EAIKKIQ------------------------DTILICPPVVSQYA--ALGAL-QVGKSYCQQHLPE 291 (389)
T ss_pred eeEEEecCHHHH--HHHHHHH------------------------hhcccCCCcHHHHH--HHHHH-hCChHHHHHHHHH
Confidence 389999987762 2221100 00111223333322 12222 11 1113444555
Q ss_pred HHHHHHHHHHhhCCCCcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 384 EDVYIESALGRILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
.++.++++.+.|.+++++ .+..+ .++.+.+.-.+. +++..++++.|.+++||.+++|..|+
T Consensus 292 ~~~~r~~l~~~L~~~~~~~~~~~~----~gg~~~~~~~~~--------------~~~~~~~~~~l~~~~gv~v~pg~~f~ 353 (389)
T PRK05957 292 IAQVRQILLKSLGQLQDRCTLHPA----NGAFYCFLKVNT--------------DLNDFELVKQLIREYRVAVIPGTTFG 353 (389)
T ss_pred HHHHHHHHHHHHHhcCCCccccCC----CeeEEEEEeCCC--------------CCChHHHHHHHHHHCCEEEccchhhC
Confidence 667788888888877664 44333 334444433332 24567888888777899999988764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ .++++|||++.. ++++++..++.|.+.+.+
T Consensus 354 ~~---------------------------~~~~iRis~~~~-~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 354 MK---------------------------NGCYLRIAYGAL-QKATAKEGIERLVQGLKT 385 (389)
T ss_pred CC---------------------------CCCEEEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 11 147999999753 677888888777776554
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=232.60 Aligned_cols=328 Identities=13% Similarity=0.109 Sum_probs=220.6
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|||.+ ..+.|.+++.+.+..+..+++....... ......++++.+++++|.+ .++|+++|+.+ ...++.+
T Consensus 64 YL~l~----~~p~v~~a~~~~~~~~~~~~~~s~~~~~--~~~~~~~le~~la~~~g~~---~~~~~~sG~~A-n~~~l~~ 133 (407)
T PRK07179 64 YLNLS----GHPDIIKAQIAALQEEGDSLVMSAVFLH--DDSPKPQFEKKLAAFTGFE---SCLLCQSGWAA-NVGLLQT 133 (407)
T ss_pred ccCCC----CCHHHHHHHHHHHHHhCCCCCccccccC--CchHHHHHHHHHHHHhCCC---cEEEECCHHHH-HHHHHHH
Confidence 55544 3467888888888766556543221111 1235667889999999984 35677666665 4555555
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
+ ..+|+. |+++..+|.+....++..|++++.++. .|+++|++++++ .++++|++
T Consensus 134 l---------------~~~g~~--v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~----~~~~lV~v 187 (407)
T PRK07179 134 I---------------ADPNTP--VYIDFFAHMSLWEGVRAAGAQAHPFRH-----NDVDHLRRQIER----HGPGIIVV 187 (407)
T ss_pred h---------------CCCCCE--EEEECCcCHHHHHHHHHCCCeEEEecC-----CCHHHHHHHHHh----cCCeEEEE
Confidence 5 356764 888999999998888888888766643 489999999973 25789999
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc----CCCCCC-CCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN----LRSRNI-DGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id----~~~~~~-~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++++|+||.+.|+++|.++|+++|+++++|++|+.|....+ +...+. .++|+++.|+||++|++ +|+++++++
T Consensus 188 ~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~--~G~l~~~~~ 265 (407)
T PRK07179 188 DSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR--AGIITCPRE 265 (407)
T ss_pred CCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc--CeEEEeCHH
Confidence 99999999999999999999999999999999987654222 111111 25799999999999853 699998877
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
+.. .+..... . ....+|++...+ +.++++.. +. .+.+.++.+.++++++
T Consensus 266 ~~~--~~~~~~~----------------------~-~~~~~t~~~~~~aa~~aal~~~--~~--~~~~~~~l~~~~~~l~ 316 (407)
T PRK07179 266 LAE--YVPFVSY----------------------P-AIFSSTLLPHEIAGLEATLEVI--ES--ADDRRARLHANARFLR 316 (407)
T ss_pred HHH--HHHHhCc----------------------C-eeeCCCCCHHHHHHHHHHHHHH--hc--CHHHHHHHHHHHHHHH
Confidence 622 1110000 0 001234333322 23334443 11 2456778888999999
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|.++ ++++.++ .+++.+..... .....+.+.|.+ +||.+. .+|. |...
T Consensus 317 ~~L~~~-g~~v~~~-----~~i~~l~~~~~---------------~~~~~~~~~L~~-~GI~~~--~~~~-p~~~----- 366 (407)
T PRK07179 317 EGLSEL-GYNIRSE-----SQIIALETGSE---------------RNTEVLRDALEE-RNVFGA--VFCA-PATP----- 366 (407)
T ss_pred HHHHHc-CCCCCCC-----CCEEEEEeCCH---------------HHHHHHHHHHHH-CCceEe--eecC-CCCC-----
Confidence 999887 6766532 35665553211 013467777754 799854 2232 1100
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..++.+||+++.++|++|+++++++|++++.+
T Consensus 367 ------------------~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 367 ------------------KNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred ------------------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 02478999999999999999999999998776
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-24 Score=227.70 Aligned_cols=338 Identities=16% Similarity=0.155 Sum_probs=236.7
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHH
Q 043646 45 PPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124 (625)
Q Consensus 45 ~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~ 124 (625)
++...+.+..++++..+.+-.....+ | ++..++-....+.+++.+.+.+...+.. |. .++...+.+..+.+
T Consensus 34 p~~g~p~~~v~~~l~~~~~~d~~~~~---~-~p~~~~~~~~~~~~~~~a~~~~~~~~~~---nl--~d~~~~p~a~~~E~ 104 (460)
T COG0076 34 PEKGEPLEEVLDELAELLIKDELYLD---G-HPRANLAGFCPTRVPPVAAELLVSALNK---NL--GDPDESPAAAELEE 104 (460)
T ss_pred CccCCchhhHHHHHHHHhhccccccc---C-CcceEEEccCCCCCHHHHHHHHHHHHhh---cC--CCcccChhHHHHHH
Confidence 34447777888888887433222222 1 2334555555566777777777776643 22 22334567889999
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhh-ccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLIT-SLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~-~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
++..++++++|.+..-...||.+||.+++..+..+.... +..... ...+++.++|+++...|+|..++++..|.
T Consensus 105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~-----~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~ 179 (460)
T COG0076 105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERW-----RKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGL 179 (460)
T ss_pred HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHH-----HHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCC
Confidence 999999999999744367888778888887776665322 111111 23344566899999999999999999999
Q ss_pred eEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC
Q 043646 204 EVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR 282 (625)
Q Consensus 204 ~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~ 282 (625)
+++.+++++ +..+|+++|+++|+++...+ +|+.+.++++||.++|+++|+++|+++++|+|||+|.+....++.-.
T Consensus 180 ~~~~v~~~~~~~~id~~~l~~~i~~~t~~g---~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~ 256 (460)
T COG0076 180 GLRRVPTVPTDYRIDVDALEEAIDENTIGG---VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEP 256 (460)
T ss_pred CceeEEeccCccccCHHHHHHHHHhhccCc---eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCc
Confidence 999999988 78999999999999632211 58999999999999999999999999999999999988766654322
Q ss_pred ----CCCCCCCcEEEEcCCCCCCCCCCceEEEEecc-ccc-cCCCCCcccCC-ceEEeeccccccccccccchhhhhcCC
Q 043646 283 ----SRNIDGYDAIFLATHKFLGGPGTPGILLISKA-LYQ-LGSSPPSTCGG-GTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 283 ----~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~-l~~~~p~~~gg-g~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
....+++|++++++|||+..|.|+|+++++++ .++ .......+.++ ...++ -..+
T Consensus 257 ~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~------------------ti~~ 318 (460)
T COG0076 257 DGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNF------------------TILG 318 (460)
T ss_pred cchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCce------------------eEee
Confidence 12345899999999999999999999999988 321 11122222222 11110 1123
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEec
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~ 420 (625)
+.+-...+.+-..+......|+..+.++..++++++.+.|.+++.++++.+. .+++++|...
T Consensus 319 sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p---~l~~V~fr~~ 380 (460)
T COG0076 319 SRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP---ELPIVAFRLK 380 (460)
T ss_pred ccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC---ccceEEEEcC
Confidence 3332222222222222245677888999999999999999999889999864 7899999983
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-24 Score=228.85 Aligned_cols=338 Identities=16% Similarity=0.069 Sum_probs=230.1
Q ss_pred eEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~ 154 (625)
.+.|+.+.. .++++.+.+++.+.+... .. .|....+..++.+.+.+++++.+| .+++ +|++| +|+++++.
T Consensus 26 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~----~~-~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~-~i~~t-~g~~~al~ 98 (382)
T PRK06108 26 VLPLWFGESDLPTPDFIRDAAAAALADG----ET-FYTHNLGIPELREALARYVSRLHGVATPPE-RIAVT-SSGVQALM 98 (382)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHhCCCcCcc-eEEEe-CChHHHHH
Confidence 444444332 344678888887766431 11 122223355677777777877778 5555 78888 78888898
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC---CCCCCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD---NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~~~ld~~~L~~~l~~~~~~ 231 (625)
.++..+ +++||+ |+++.+.|+.+...++..|++++.++.+. ++.+|+++|+++++
T Consensus 99 ~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~----- 156 (382)
T PRK06108 99 LAAQAL---------------VGPGDE--VVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT----- 156 (382)
T ss_pred HHHHHh---------------cCCCCE--EEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC-----
Confidence 888776 478885 88889999988888888999999999874 24689999999886
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc--------ccCCCCCCCCCcEEEEcCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK--------INLRSRNIDGYDAIFLATHKFL 300 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~--------id~~~~~~~~~D~v~~S~hK~l 300 (625)
++++++++++++||||.+.+ +++|+++|+++|+++++|++++..... .++.. .....+++.|++|.+
T Consensus 157 ~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~ 234 (382)
T PRK06108 157 PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--PDDRIIFVNSFSKNW 234 (382)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC--CcCCEEEEeechhhc
Confidence 57899999999999999876 578899999999999999996643221 11111 112357788999998
Q ss_pred CCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|.|+ .+|++++++++. +.+.... .....+.+.+.+. ++...+.......+.
T Consensus 235 g~~G~RiG~~~~~~~~~--~~~~~~~------------------------~~~~~~~~~~~q~--a~~~~l~~~~~~~~~ 286 (382)
T PRK06108 235 AMTGWRLGWLVAPPALG--QVLEKLI------------------------EYNTSCVAQFVQR--AAVAALDEGEDFVAE 286 (382)
T ss_pred cCcccceeeeeCCHHHH--HHHHHHH------------------------HhcccCCChHHHH--HHHHHHhCChHHHHH
Confidence 7554 489999987762 2221100 0001122233221 222222111112456
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
++++.+.+++++.+.|.+++++++..+ .++.+.+...+.. .+..++++.|.+++||.+++|.
T Consensus 287 ~~~~~~~~~~~l~~~L~~~~~~~~~~p----~~g~~~~~~l~~~--------------~~~~~~~~~ll~~~gV~v~pg~ 348 (382)
T PRK06108 287 LVARLRRSRDHLVDALRALPGVEVAKP----DGAMYAFFRIPGV--------------TDSLALAKRLVDEAGLGLAPGT 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccCC----CeeEEEEEeCCCC--------------CCHHHHHHHHHHhCCEEEeCch
Confidence 677888888999999988888887655 3455555444321 2356788888777899999887
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.|... .++++|||++. ++++++..++.|+++++
T Consensus 349 ~f~~~---------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 349 AFGPG---------------------------GEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred hhCCC---------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 65311 24899999987 88999999999987653
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=212.51 Aligned_cols=334 Identities=15% Similarity=0.108 Sum_probs=246.4
Q ss_pred CcchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~ 164 (625)
.+.|+.|.+++.+.+.. .++.| ....++.+.+..|.++.++..... .|+|+ .|..-+|..+++++.
T Consensus 37 f~~pp~i~~Al~~rvdhGvfGY~--------~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~-p~VVpgi~~~I~~~T--- 104 (388)
T COG1168 37 FPTPPEIIEALRERVDHGVFGYP--------YGSDELYAAIAHWFKQRHQWEIKPEWIVFV-PGVVPGISLAIRALT--- 104 (388)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCC--------CCCHHHHHHHHHHHHHhcCCCCCcceEEEc-CcchHhHHHHHHHhC---
Confidence 46788999999998853 23333 335678899999999999886432 67776 788889999999884
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CC--CCCHHHHHHHHHHhhhCCCCeEEEEec
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NG--LLDIEALRSQLELYKAAKRPMLGSFSA 241 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~--~ld~~~L~~~l~~~~~~~~~~lv~~~~ 241 (625)
++||. |++..+.|+.+.......|.+++..|+-. ++ .+|.++|++++.+ ++++++++|+
T Consensus 105 ------------~~gd~--Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~----~~vkl~iLCn 166 (388)
T COG1168 105 ------------KPGDG--VVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD----ERVKLFILCN 166 (388)
T ss_pred ------------cCCCe--eEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc----CCccEEEEeC
Confidence 78997 77777777777788888999999999863 44 6799999999985 5789999999
Q ss_pred ccCccccc---cCHHHHHHHHHHcCCEEEEeccCcC----CCccccCCCCCCCCC--cEEEEcCCCCCCCCC-CceEEEE
Q 043646 242 CSNVTGIY---SDTRSIARLLHQYGGFACFDFAASG----PYVKINLRSRNIDGY--DAIFLATHKFLGGPG-TPGILLI 311 (625)
Q Consensus 242 ~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~----g~~~id~~~~~~~~~--D~v~~S~hK~lggp~-g~G~l~v 311 (625)
|+||||.+ ..++.|+++|.+||+.||.|+.|+- |+..+.+..+..... -+.+.|++|.|+-++ .++.+++
T Consensus 167 PHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii 246 (388)
T COG1168 167 PHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIII 246 (388)
T ss_pred CCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEe
Confidence 99999998 5688899999999999999999883 333343333322223 466678999998665 3677777
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
.++..+.+ +... -.+...+.++.+++++.-.++- ......+.+.++.+.+.+++
T Consensus 247 ~n~~lr~~------------------------~~~~-l~~~~~~~~n~lg~~A~~aAY~-~G~~WLd~L~~yl~~N~~~~ 300 (388)
T COG1168 247 SNRELRAK------------------------FLKR-LKRNGLHGPSALGIIATEAAYN-QGEPWLDELLEYLKDNRDYV 300 (388)
T ss_pred cCHHHHHH------------------------HHHH-HHHhcCCCCchHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHH
Confidence 76652210 1111 1122345678888765544443 12234668889999999999
Q ss_pred HHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 392 LGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 392 ~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
.+.|.+ +|++++..|++ .-+.+.-+ ++.+++.+++.+.|+++.+|.+..|..|+..
T Consensus 301 ~~~l~~~~P~v~v~~p~g----TYL~WLD~-------------r~l~l~d~~l~~~ll~~akVal~~G~~FG~~------ 357 (388)
T COG1168 301 ADFLNKHLPGVKVTEPQG----TYLAWLDC-------------RELGLDDSELAEFLLEEAKVALSPGSTFGEE------ 357 (388)
T ss_pred HHHHHhhCCCcEEecCCC----ceeeeeec-------------cccCCChHHHHHHHHHhhcEeccCCCccCcC------
Confidence 999975 69999998862 33333332 4567777899999999999999999988621
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..|++|++++ ++.+-+++.++.|+..+..
T Consensus 358 ---------------------g~gf~RlN~a--cpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 358 ---------------------GSGFVRLNFA--CPRAILEEALERLKRALKK 386 (388)
T ss_pred ---------------------CCceEEEecC--CCHHHHHHHHHHHHHHHhc
Confidence 2499999997 5778888888888766543
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=227.65 Aligned_cols=324 Identities=16% Similarity=0.074 Sum_probs=218.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.|.+++.+.+..+ ++... .+.........++++++.+++++|++ + .++++ +|+.+++ .++.++
T Consensus 17 ~~~v~~a~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~-~-~iv~~-sg~~a~~-~~~~~~--------- 81 (349)
T cd06454 17 HPEVIEAAKEALDKY-GVGAG-GSRLISGTSDLHEELEEELAEFHGKE-A-ALVFS-SGYAAND-GVLSTL--------- 81 (349)
T ss_pred CHHHHHHHHHHHHHh-CCCCC-CcCeecCCchHHHHHHHHHHHHhCCC-C-EEEec-cHHHHHH-HHHHHh---------
Confidence 678999999988653 33322 11111234667788999999999975 2 45554 6766544 444444
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~ 249 (625)
+++||+ |+++.++|+++...++..|++++.++. +|.+++++++++.....+++++++++++|+||.+
T Consensus 82 ------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~ 148 (349)
T cd06454 82 ------AGKGDL--IISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDI 148 (349)
T ss_pred ------cCCCCE--EEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCc
Confidence 467885 999999999998888889999988763 4788899988742112467899999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCccccCC-----CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLR-----SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~-----~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
.|+++|+++|+++|+++|+|++++.|....... .....+.|+++.|+||+++. .| |+++.++++. +.+.+.
T Consensus 149 ~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-G~i~~~~~~~--~~~~~~ 224 (349)
T cd06454 149 APLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-GYIAGSKELI--DYLRSY 224 (349)
T ss_pred cCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-CEEECCHHHH--HHHHHh
Confidence 999999999999999999999998765432110 01123779999999999985 44 7887777662 211110
Q ss_pred ccCCceEEeeccccccccccccchhhhh-cCCChhH--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQI--VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~--~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
. ..+ ..++.+. ...+.++++.. .. .+.+.++.+.+++++.+.|.++ ++
T Consensus 225 ~------------------------~~~~~~~~~~~~~~~a~~~~l~~~--~~--~~~~~~~~~~~~~~l~~~l~~~-g~ 275 (349)
T cd06454 225 A------------------------RGFIFSTSLPPAVAAAALAALEVL--QG--GPERRERLQENVRYLRRGLKEL-GF 275 (349)
T ss_pred c------------------------hhhhccCCCCHHHHHHHHHHHHHH--hc--CHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 0 001 1122222 22334445544 22 3566788888999999999876 66
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 402 QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 402 ~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
+++.+. ...++.+...++ .+..++.+.|.+ .||.++++.....+.
T Consensus 276 ~~~~~~---~~~~~~~~~~~~---------------~~~~~~~~~L~~-~gI~~~~~~~~~~~~---------------- 320 (349)
T cd06454 276 PVGGSP---SHIIPPLIGDDP---------------AKAVAFSDALLE-RGIYVQAIRYPTVPR---------------- 320 (349)
T ss_pred cccCCC---CCcEEEEeCCCh---------------HHHHHHHHHHHh-CCceEEEecCCccCC----------------
Confidence 666542 122333322211 135678888866 499998642211000
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+++||+++.+++++|+++++++|+++
T Consensus 321 ----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 321 ----------GTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred ----------CCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1378999999999999999999999864
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=230.88 Aligned_cols=345 Identities=17% Similarity=0.141 Sum_probs=222.9
Q ss_pred CCCCCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 83 HTASGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 83 ~~~~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
+++.+..++.|.+++.+.+...+ ++++...+ .+.... .+.+.+++.+++++|++.. .|+++ +|+ .++..++.+
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~-~~~~~~~~l~~~~~~~~~~~~g~~~~-~v~~~-sgt-~a~~~~l~~ 100 (402)
T cd00378 25 IASENFTSPAVMEAMGSDLTNKYAEGYPGKRYY-GGCEYVDEIEDLAIERAKKLFGAEYA-NVQPH-SGS-QANLAVYFA 100 (402)
T ss_pred eccCCcCCHHHHHHhcccccccccCCCCCCccc-CCchHHHHHHHHHHHHHHHHhCCCce-eeecC-CcH-HHHHHHHHH
Confidence 34446678899999987764333 56654322 333333 4444478889999999754 56555 565 567777777
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-----HHHcCCeEEEEecCC---CCCCCHHHHHHHHHHhhhC
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-----WRQSLAEVVEIGLDD---NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-----~~~~G~~vv~v~~~~---~~~ld~~~L~~~l~~~~~~ 231 (625)
+ +++||+ |++++++|+++... ++..|++++.++++. ++.+|++++++++..
T Consensus 101 l---------------~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~---- 159 (402)
T cd00378 101 L---------------LEPGDT--IMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE---- 159 (402)
T ss_pred h---------------cCCCCE--EEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh----
Confidence 6 578886 88888888776543 445688777777643 578999999999864
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
++++++++++++| |...|+++|+++||++|+++++|++|+.+....+.......++|+++.|+||+|+||.| |+++.
T Consensus 160 ~~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~g-g~i~~ 236 (402)
T cd00378 160 FKPKLIVAGASAY--PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRG-GLILT 236 (402)
T ss_pred CCCCEEEecCccc--CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCc-eEEEe
Confidence 4789998887765 56789999999999999999999998765432111010011569999999999987876 77777
Q ss_pred ec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 312 SK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 312 ~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
++ ++. +.+.... .....+++....+.. .++.... ..+.+...++..+++
T Consensus 237 ~~~~~~--~~l~~~~------------------------~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~ 288 (402)
T cd00378 237 RKGELA--KKINSAV------------------------FPGLQGGPHLHVIAAKAVALKEAL--EPEFKAYAKQVVENA 288 (402)
T ss_pred ccHHHH--HHHHHHh------------------------CccccCCchHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHH
Confidence 66 552 1211000 000123332222222 2222221 124556677888889
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++ |++++... ..+.+.+...++. +.+..++.+.| +++||.++.+.....+.+.
T Consensus 289 ~~l~~~L~~~-g~~~~~~~---~~~~~v~v~~~~~-------------~~~~~~~~~~l-~~~gI~v~~~~~p~~~~~~- 349 (402)
T cd00378 289 KALAEALKER-GFKVVSGG---TDNHLVLVDLRPK-------------GITGKAAEDAL-EEAGITVNKNTLPWDPSSP- 349 (402)
T ss_pred HHHHHHHHhC-CCeEeecC---CCCeEEEEeCCcc-------------CCCHHHHHHHH-HHcCcEEcCCcCCCCCCCC-
Confidence 9999999887 78776321 1234443333321 12345666666 5689999875443321100
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhhh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~~~ 524 (625)
..+.++|++++.. ++++|++.+++.|++++.+..
T Consensus 350 ----------------------~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 350 ----------------------FVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred ----------------------CCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 0246899999764 479999999999999887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=241.87 Aligned_cols=364 Identities=14% Similarity=0.070 Sum_probs=256.6
Q ss_pred CCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCc----chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHH
Q 043646 47 HSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGR----SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKM 122 (625)
Q Consensus 47 ~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~----~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~ 122 (625)
...+..+.+..+++.-. ++.+|+++.+.|. .|..|.+++.+...- +..-+...-..+.+..+.
T Consensus 83 ~~~sE~e~~~~~~~la~------------kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~-~TaytPYqaEisQG~lqa 149 (993)
T PLN02414 83 EGLTESQMLEHMKSLAS------------KNKVFKSYIGMGYYNTHVPPVILRNILENPGW-YTQYTPYQAEIAQGRLES 149 (993)
T ss_pred CCCCHHHHHHHHHHHHh------------cCCccccccCCCCCCccCCHHHHHHHHhChHH-HhhcCCCchHHHHHHHHH
Confidence 45555666666666542 3456888888888 777777888764421 111111111234667788
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH--
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-- 200 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-- 200 (625)
..+.+..|++++|.+.+ ++.++ .++|++...++.++. +.+|++..|+++..+|+++...|+.
T Consensus 150 l~~~Qt~ia~LtG~~~a-naSL~-d~aTAaaea~~~a~~--------------~~~g~~~~VlVs~~~hP~~~~v~~t~a 213 (993)
T PLN02414 150 LLNYQTMITDLTGLPMS-NASLL-DEGTAAAEAMAMCNN--------------ILKGKKKKFLIASNCHPQTIDVCQTRA 213 (993)
T ss_pred HHHHHHHHHHHhCCChh-hEeec-CChHHHHHHHHHHHh--------------cccCCCCEEEEcCccCHhHHHHHHHhh
Confidence 89999999999999988 78888 678888887776663 4555444699999999999988854
Q ss_pred --cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 201 --SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 201 --~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
.|++|+.++.+.. + ... +.+ +.++.+..|.+|.+.|+++|+++||++|+++++ +|+..+...
T Consensus 214 ~~~GieV~~v~~~~~---~------~~~-----~~v-~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~ 277 (993)
T PLN02414 214 DGLGLEVVVADEKDF---D------YSS-----GDV-CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTM 277 (993)
T ss_pred hhcCCEEEEecchhh---c------ccc-----Cce-EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcC
Confidence 4899999987431 1 111 123 334566677899999999999999999999999 888877777
Q ss_pred c-cCCCCCCCCCcEEEEcCCCCC-----CCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 279 I-NLRSRNIDGYDAIFLATHKFL-----GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 279 i-d~~~~~~~~~D~v~~S~hK~l-----ggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
+ +..++ |+|+++.++|||+ |||. .|++++++++ .+.+++...|++ ++..................|+
T Consensus 278 l~~pge~---GADi~vgsgqKwg~P~G~GGP~-aGflavr~~~--~r~~PgriVG~s-~d~~g~~~~~l~LqtReqhiRr 350 (993)
T PLN02414 278 LKPPGEW---GADIVVGSAQRFGVPMGYGGPH-AAFLATSQEY--KRLMPGRIIGVS-VDSSGKPALRMAMQTREQHIRR 350 (993)
T ss_pred CCCHhhc---cCcEEEECCCccccCCCCCCCC-eeEEEECHHH--HhhCCCcccCcc-cCCCCCcccccccccccchhhh
Confidence 7 46666 9999999999998 6666 7999999988 445554566653 2211000001122234556788
Q ss_pred cCCChhHHHHH--HHHHHHH---HHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 353 NGGTPQIVQMI--RAALAFW---VKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 353 ~~gt~~~~~~~--~aal~~~---~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
+.+|.|++... .++++.. .....|.+++.++++.++.++.++|... |+++..+. ...+++|.+. .
T Consensus 351 EkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~~---~f~~vt~~~~--~---- 420 (993)
T PLN02414 351 DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-GFQVQSLP---FFDTVKVKCS--D---- 420 (993)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-CCccCCCC---CcCeEEEecC--C----
Confidence 99999986542 2333322 2245899999999999999999999774 78876542 3456777652 1
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
..++.+.|.+ .||.++.. ..+.+|+|+++++|++
T Consensus 421 ------------~~~v~~~L~~-~gI~l~~~---------------------------------~~~~lrvs~~e~~T~e 454 (993)
T PLN02414 421 ------------ADAIADAAAK-VGINLRVV---------------------------------DANTVTVSFDETTTLE 454 (993)
T ss_pred ------------HHHHHHHHHH-CCCeeEEe---------------------------------cCCeEEEEeeccCCHH
Confidence 4578888855 79987621 1267999999999999
Q ss_pred HHHHHHHHHHH
Q 043646 508 EFEFILAALEF 518 (625)
Q Consensus 508 did~ll~aL~~ 518 (625)
|||+|+++|..
T Consensus 455 dId~L~~~l~~ 465 (993)
T PLN02414 455 DVDKLFKVFAG 465 (993)
T ss_pred HHHHHHHHHcc
Confidence 99999999974
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=235.33 Aligned_cols=365 Identities=15% Similarity=0.105 Sum_probs=241.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
.+.++.+++.++.+||++++|.+. .-++.++|+.+.+..++.+... ++ .-..+.+.+|+++...|.++
T Consensus 524 ~sqG~lq~i~elq~~l~eltGmd~--~Sl~p~aGA~gE~agL~aiR~y------~~----~rge~~R~~vlip~saHgtn 591 (939)
T TIGR00461 524 QVEGYQELIAQLEKWLCSITGFDA--ISLQPNSGAQGEYAGLRVIRSY------HE----SRGENHRNICLIPVSAHGTN 591 (939)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCC--cccCCchHHHHHHHHHHHHHHH------HH----hcCCCCCCEEEEEccccCcC
Confidence 456688999999999999999984 3466656666544333332210 00 00122345799999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC-HHHHHHHHHHcCCEEEEeccCc
Q 043646 195 LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD-TRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~-l~~I~~la~~~g~~vivD~A~~ 273 (625)
..+++..|++++.|+.+.+|.+|+++|++++++ +++++++|++++++| +|.+.| +++|+++||++|.++++|+|+.
T Consensus 592 Pasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~--~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~ 668 (939)
T TIGR00461 592 PASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQ--HGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANM 668 (939)
T ss_pred HHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhh--cCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecCh
Confidence 988999999999999998999999999999983 224799999999999 799977 9999999999999999999997
Q ss_pred CCCcccc-CCCCCCCCCcEEEEcCCCCCCCC-----CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 274 GPYVKIN-LRSRNIDGYDAIFLATHKFLGGP-----GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 274 ~g~~~id-~~~~~~~~~D~v~~S~hK~lggp-----~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
.+...+. ..++ ++|++++|.||+|++| .|+|++.+++.+ .|..+|+........ ....
T Consensus 669 ~al~~l~~Pg~~---GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L------~~~lPg~~v~~t~d~---~gre---- 732 (939)
T TIGR00461 669 NAQVGLTSPGDL---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHL------IPFLPKHDVVSMITG---IGGS---- 732 (939)
T ss_pred hhCCCCCCcccc---CCCEEEecCCccCCCCCCCCCCCeEEEEEhhhc------hhhcCCCcccccccC---CCCc----
Confidence 7554443 3344 8999999999999845 446999999875 233344322110000 0000
Q ss_pred hhhhhcCC--ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC-CCcceEEEEeccCCC
Q 043646 348 IEERENGG--TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV-KRQAILSFLVYSTTN 424 (625)
Q Consensus 348 ~~~~~~~g--t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~-~~~~i~~f~~~~~~~ 424 (625)
...+.... +.+..-++++.+-+......|+.++.+....+++|+.++|.+ +++++.+... ....-+.|...+.
T Consensus 733 q~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~-- 808 (939)
T TIGR00461 733 KSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL-- 808 (939)
T ss_pred cccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch--
Confidence 00010111 111111112211111224455667777888889999999987 4455543211 1111133333221
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
....++...++++.|.+ +|+...+-. + | -.+.+-|.+.-..
T Consensus 809 --------~~~~g~~~~dIakrL~d-~G~hapt~~-~--p---------------------------v~g~lmiepTE~e 849 (939)
T TIGR00461 809 --------KAKTGIEAIDVAKRLQD-YGFHAPTLS-F--P---------------------------VPGTLMVEPTESE 849 (939)
T ss_pred --------hhhcCCCHHHHHHHHHh-CCeeccccC-C--c---------------------------cCCeEEEEeeccC
Confidence 12345667899999977 799864311 1 1 1245666666688
Q ss_pred CHHHHHHHHHHHHHHHHhhhhcccCcccccccccccccccchh------hhhhh-hcccccCCc
Q 043646 505 SNEEFEFILAALEFIAAYGHRFLPLYHFNVKAGNWCSSQKAIK------DLIDK-ETNNNINNP 561 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~~w~~~~~~~~------~~~~~-~~~~~~~~~ 561 (625)
|.+|+|+++++|..+.++... ++.|.|.-.++.|| .+++. +|-..|+..
T Consensus 850 skeelD~f~~al~~I~~e~~~--------~~~g~~~~~~~~l~~ap~~~~~~~~~~w~~~y~r~ 905 (939)
T TIGR00461 850 SLEELDRFCDAMIAIKEEINA--------LVAGQPKGQDNPLKNAPHSLQSLITSEWWHPYSRE 905 (939)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------hhcCCCCCCcchHhhCCCCHHHhhcCCCCCCcChh
Confidence 999999999999999988655 78899988888877 34554 786555443
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=224.21 Aligned_cols=323 Identities=17% Similarity=0.150 Sum_probs=222.8
Q ss_pred CCCceEeccCCC-CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 74 GKRRLTYADHTA-SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 74 g~~~~~Yld~~~-~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
|...++.|..+. ..+.|+.+.+++.+++......+.. ...++|+.+++++|++++ +|+++ +|++++
T Consensus 17 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~~-~G~~~~ 83 (346)
T TIGR01141 17 GGKEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDP-----------DPAELKQALADYYGVDPE-QILLG-NGSDEI 83 (346)
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCC-----------CHHHHHHHHHHHhCcChH-HEEEc-CCHHHH
Confidence 334566775433 3456778999988765321111110 025799999999998766 89998 788988
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||+ |+++.+.|+.+...++..|++++.++++.++.+|++++++++. +
T Consensus 84 l~~~~~~l---------------~~~gd~--v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~-----~ 141 (346)
T TIGR01141 84 IELLIRAF---------------LEPGDA--VLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAID-----D 141 (346)
T ss_pred HHHHHHHh---------------cCCCCE--EEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcC-----C
Confidence 88887766 467875 8888888877766778889999999998888899999999875 5
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
++++|++++++||||.+.|++++.++|+.+ |+++++|++++.-.. ..+.-.. ...++++.|++|++|.|+ ++
T Consensus 142 ~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~--~~~~i~~~S~sK~~g~~G~r~ 219 (346)
T TIGR01141 142 KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAE--YPNLIVLRTLSKAFGLAGLRI 219 (346)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhh--CCCEEEEehhhHhhhchhhhc
Confidence 799999999999999999999999999887 999999999762111 1111111 123466789999997553 48
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
|++++++++. +.+.+... ..+.+.+.+ .++.+++. .....+.+.++.++
T Consensus 220 G~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~--~~~~~~l~-~~~~~~~~~~~~~~ 268 (346)
T TIGR01141 220 GYAIANAEII--DALNKVRA--------------------------PFNLSRLAQ--AAAIAALR-DDDFIEKTVEEINA 268 (346)
T ss_pred eeeecCHHHH--HHHHhccC--------------------------CCCCCHHHH--HHHHHHhC-CHHHHHHHHHHHHH
Confidence 9999988762 22221110 011111211 22233331 11135677788888
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.+++++++..+ .+.++.+.+ +. +..++.+.|.+ +||.+++|..+..
T Consensus 269 ~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~-~~----------------~~~~~~~~L~~-~gI~v~~g~~f~~--- 323 (346)
T TIGR01141 269 ERERLYDGLKKLPGLEVYPS----DANFVLIRF-PR----------------DADALFEALLE-KGIIVRDLNSYPG--- 323 (346)
T ss_pred HHHHHHHHHHhcCCCEECCC----cCCEEEEec-CC----------------CHHHHHHHHHH-CCeEEEeCCCcCC---
Confidence 89999999988888886533 234444433 21 25678888865 7999998876531
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.++++|||++ +++|+++++++|+
T Consensus 324 -------------------------~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 324 -------------------------LPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred -------------------------CCCeEEEecC---CHHHHHHHHHHhC
Confidence 1488999987 8999999999874
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=230.59 Aligned_cols=339 Identities=17% Similarity=0.119 Sum_probs=225.0
Q ss_pred eccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 80 YADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 80 Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
||..+.. ..+++.+.+++.++- . +++.+....+.....+++++.+|+++|.+ + .++|+ +|..+++..+ .
T Consensus 110 YLgl~~~~~~~~~~~~~ai~~~g----~--~~~~sr~~~g~~~~~~ele~~lA~~~g~~-~-ai~~~-~G~~an~~~i-~ 179 (489)
T PLN02483 110 YLGFAAADEYCTPRVIESLKKYS----A--STCSSRVDGGTTKLHRELEELVARFVGKP-A-AIVFG-MGYATNSTII-P 179 (489)
T ss_pred ccCcCCCCHHHHHHHHHHHHHhC----C--CCCccccccCCcHHHHHHHHHHHHHhCCC-c-EEEEC-CHHHHHHHHH-H
Confidence 4554432 234456666665532 1 11122222345677889999999999964 3 68886 7877766433 3
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh--CCC---
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA--AKR--- 233 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~--~~~--- 233 (625)
++ +++||. |+++..+|+++...++..|++++.++.+ |+++|++.+++... .++
T Consensus 180 al---------------~~~Gd~--Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~ 237 (489)
T PLN02483 180 AL---------------IGKGGL--IISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHR 237 (489)
T ss_pred Hh---------------CCCCCE--EEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhcccccccc
Confidence 34 478885 9999999999999999999999999864 67777777653110 122
Q ss_pred --Ce-EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc------cCCCCCCCCCcEEEEcCCCCCCCCC
Q 043646 234 --PM-LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI------NLRSRNIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 234 --~~-lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i------d~~~~~~~~~D~v~~S~hK~lggp~ 304 (625)
.+ +|++.++.|++|.+.++++|.++|++||+++++|+||+.++... +.......++|+++.|++|.||+ .
T Consensus 238 p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~ 316 (489)
T PLN02483 238 PWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-C 316 (489)
T ss_pred CCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-C
Confidence 24 67777788999999999999999999999999999998765321 11111123679999999999984 4
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh-cCCChhHHHHHHHHHHHHHHhh--cCHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQIVQMIRAALAFWVKEY--IGYEVIK 381 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~aal~~~~~~~--~g~~~i~ 381 (625)
| |+++.++++. +.+.....+ ..+ ....|...+.+.++++++..+. .-.....
T Consensus 317 G-G~i~~~~~li--~~l~~~~~~----------------------~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~ 371 (489)
T PLN02483 317 G-GYIAGSKELI--QYLKRTCPA----------------------HLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKL 371 (489)
T ss_pred c-eEEEcCHHHH--HHHHHhCcc----------------------ccccCCcCHHHHHHHHHHHHHHHhCccccchHHHH
Confidence 4 8998888773 222111100 000 0123344444455666653221 1123345
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+++++++++.|.++ |+.++++. ..+++.+.+.... ...++++.|.+ .||.+.+..++
T Consensus 372 ~~l~~~~~~l~~~L~~~-G~~v~~~~---~sp~~~l~l~~~~---------------~~~~~~~~Ll~-~GI~v~~~~fp 431 (489)
T PLN02483 372 AQIRENSNFFRSELQKM-GFEVLGDN---DSPVMPIMLYNPA---------------KIPAFSRECLK-QNVAVVVVGFP 431 (489)
T ss_pred HHHHHHHHHHHHHHHHC-CCcccCCC---CCCEEEEEECCHH---------------HHHHHHHHHHH-CCcEEeeeCCC
Confidence 67888899999999887 77777653 3466666554321 13467788866 69999864443
Q ss_pred CchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 462 AGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.|. ..+.+||+++..+|++|+++++++|+++++.
T Consensus 432 ~~p~--------------------------~~~~vRi~isa~~t~edId~~l~~L~~~~~~ 466 (489)
T PLN02483 432 ATPL--------------------------LLARARICISASHSREDLIKALEVISEVGDL 466 (489)
T ss_pred CCCC--------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 3221 1378999999999999999999999998764
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=220.10 Aligned_cols=321 Identities=15% Similarity=0.022 Sum_probs=212.5
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+... ++|+.+++++.+.+..... |.. ....++|+.++++++++++ +|++| +|+++++..
T Consensus 21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~------y~~-----~~~~~lr~~ia~~~~~~~~-~i~it-~Ga~~~l~~ 87 (356)
T PRK08056 21 QLLDFSANINPLGMPVSLKRAIIDNLDCAER------YPD-----VEYRHLHQALARHHQVPAS-WILAG-NGETESIFA 87 (356)
T ss_pred hEEEeccccCCCCCCHHHHHHHHHHHHhccc------CcC-----ccHHHHHHHHHHHhCcChh-hEEEC-CCHHHHHHH
Confidence 45677655433 5677889998776642211 111 1146799999999999877 89998 899999998
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ .+|+ +++..+.|..+...++..|++++.++++++ ..+| +++.+.+. ++
T Consensus 88 ~~~~l----------------~~g~---viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-----~~ 142 (356)
T PRK08056 88 VVSGL----------------KPRR---AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-----PD 142 (356)
T ss_pred HHHHh----------------CCCC---EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-----CC
Confidence 87765 4554 444556677776778888999999998753 2444 34555554 57
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----cccc-CCCCCCCCCcEEEEcCCCCCCCCC-
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKIN-LRSRNIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id-~~~~~~~~~D~v~~S~hK~lggp~- 304 (625)
+++|++++|+||||.+.+ +++|+++|+++|+++|+|+++.--. ..++ +... ..++++.|++|+||.|+
T Consensus 143 ~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~---~~~i~~~S~SK~~~~~G~ 219 (356)
T PRK08056 143 LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADN---PHLWVLRSLTKFYAIPGL 219 (356)
T ss_pred CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccC---CCEEEEEechhhccCcch
Confidence 899999999999999988 7889999999999999999953211 0111 2221 34688899999998564
Q ss_pred CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|++++++ .+ +..+.. .....+.+..+ +.+...++........++++
T Consensus 220 RiG~~v~~~~~~--~~~l~~---------------------------~~~~~~~~~~~--~~~a~~~l~~~~~~~~~~~~ 268 (356)
T PRK08056 220 RLGYLVNSDDAA--VARMRR---------------------------QQMPWSINAFA--ALAGEVILQDRAYQQATWQW 268 (356)
T ss_pred hheeeecCCHHH--HHHHHH---------------------------hCCCCchhHHH--HHHHHHHhCCHHHHHHHHHH
Confidence 489998853 33 111110 00111222222 22222222122223455666
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.++.++++.+.|+.++++.+..+ .+.+.|...+. +..++++.|.+ +||.+++|..+.+
T Consensus 269 ~~~~r~~l~~~L~~~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~~~~l~~-~gI~v~~~~~f~~ 326 (356)
T PRK08056 269 LAEEGARFYQALCALPLLTVWPG-----RANYLFLRCER----------------PDIDLQRALLT-QRILIRSCANYPG 326 (356)
T ss_pred HHHHHHHHHHHHhcCCCcEEcCC-----CCcEEEEEcCC----------------ChHHHHHHHHH-CCeEEEECCCCCC
Confidence 77778889999988888776533 23443433321 13578888865 7999998876531
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
..++++||+++ +.++.++++++|++++.
T Consensus 327 ---------------------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 327 ---------------------------LDSRYYRVAIR---SAAENERLLAALRNVLT 354 (356)
T ss_pred ---------------------------CCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence 12479999997 88999999999998754
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=222.48 Aligned_cols=321 Identities=14% Similarity=0.038 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
...++++.+++++|.+ +++++++| +.++..++.++. +.+||+ |+++..+|+++..++...
T Consensus 19 ~~~~~~~~la~~~~~~---~~~~~~sg-t~al~~~l~~l~--------------~~~gd~--vl~~~~~~~~~~~~~~~~ 78 (352)
T cd00616 19 KVREFEKAFAEYLGVK---YAVAVSSG-TAALHLALRALG--------------IGPGDE--VIVPSFTFVATANAILLL 78 (352)
T ss_pred HHHHHHHHHHHHhCCC---eEEEECCH-HHHHHHHHHHcC--------------CCCCCE--EEeCCcchHHHHHHHHHc
Confidence 4677899999999963 57777555 446777777652 467875 999999999999999999
Q ss_pred CCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 202 LAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 202 G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
|++++.+++++ ++.+|+++|+++++ +++++|++++ ++|...|+++|.++|+++|+++++|++|+.|....+
T Consensus 79 g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~ 150 (352)
T cd00616 79 GATPVFVDIDPDTYNIDPELIEAAIT-----PRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKG 150 (352)
T ss_pred CCeEEEEecCCCcCCcCHHHHHHhcC-----cCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECC
Confidence 99999999987 67899999999886 5789888764 689999999999999999999999999998876432
Q ss_pred CCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 281 LRSRNIDGYDAIFLATH--KFLGGPGTPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
. ..+ ...|+.++|+| |+++++.| |++++++ ++ .+.+++...++....+ .. +......+..+++
T Consensus 151 ~-~~~-~~~d~~~~S~~~~K~~~~~~g-g~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~ 216 (352)
T cd00616 151 R-KVG-TFGDAGAFSFHPTKNLTTGEG-GAVVTNDEEL--AERARLLRNHGRDRDR--------FK-YEHEILGYNYRLS 216 (352)
T ss_pred E-Ecc-cCcceeEEcCCCCCCCcccCc-eEEEECCHHH--HHHHHHHHHcCCCCCC--------Cc-cccceeeeccCcC
Confidence 1 111 12477787765 99965554 7777764 44 2222222212111000 00 0000011122333
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CCcceEEEEeccCCCCCCccccccCC
Q 043646 358 QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV--KRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~--~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
++... +... ...+.+.+.++.+++++++++.|.++++++++.+... ...++++|.+...
T Consensus 217 ~~~aa----~~~~--~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------------- 277 (352)
T cd00616 217 EIQAA----IGLA--QLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE------------- 277 (352)
T ss_pred HHHHH----HHHH--HHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc-------------
Confidence 33322 2222 2234577888889999999999999999998875421 2345666666321
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh------c-CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL------A-FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l------~-~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
.+.+..++.+.|.+ .||.++. +|......... . -+.+.+..+ ..+.+||++++++|++|
T Consensus 278 ~~~~~~~v~~~L~~-~gI~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------~~~~l~l~~~~~~t~~d 343 (352)
T cd00616 278 AGESRDELIEALKE-AGIETRV--HYPPLHHQPPYKKLLGYPPGDLPNAEDL-----------AERVLSLPLHPSLTEEE 343 (352)
T ss_pred CCCCHHHHHHHHHH-CCCCeee--ecCccccCHhhhhccCCCcCCChHHHHH-----------HhCeEEccCCCCCCHHH
Confidence 12356789999954 6997654 34321110000 0 000111111 24799999999999999
Q ss_pred HHHHHHHHH
Q 043646 509 FEFILAALE 517 (625)
Q Consensus 509 id~ll~aL~ 517 (625)
|++++++|+
T Consensus 344 i~~i~~~l~ 352 (352)
T cd00616 344 IDRVIEALR 352 (352)
T ss_pred HHHHHHHhC
Confidence 999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=221.17 Aligned_cols=341 Identities=11% Similarity=0.038 Sum_probs=217.2
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaa 152 (625)
+..++|+.+... ++|+.+.+++.+.+... . . .|....+..++.+.+.+++.+..| ++++ +|++| +|++++
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~-~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~it-~G~~~a 104 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAG---H-T-RYTAARGLPALREAIAGFYAQRYGVDVDPE-RILVT-PGGSGA 104 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcC---C-C-ccCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEc-cCcHHH
Confidence 467899988877 56889999998877421 1 1 121122223334444444443334 4454 89998 899999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~ 230 (625)
|..++.++ +++||+ |+++.++|+.+...++..|++++.++++.+ +.+|+++++++++
T Consensus 105 l~~~~~~~---------------~~~gd~--vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---- 163 (387)
T PRK08960 105 LLLASSLL---------------VDPGKH--WLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN---- 163 (387)
T ss_pred HHHHHHHh---------------cCCCCE--EEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC----
Confidence 99998877 578886 999999999999888889999999998764 4789999999887
Q ss_pred CCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCccccCCC-CCCCCCcEEEEcCCCCCCCCC-C
Q 043646 231 AKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVKINLRS-RNIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~~id~~~-~~~~~~D~v~~S~hK~lggp~-g 305 (625)
++++++++++++||||.+.+. ++|+++|++||+++++|+++..-...-+... .....-.+++.|++|.+|.|+ .
T Consensus 164 -~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlR 242 (387)
T PRK08960 164 -ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWR 242 (387)
T ss_pred -ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccE
Confidence 578899999999999999885 5677789999999999999642111100101 111122356779999998554 3
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--cCHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY--IGYEVIKKQ 383 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~--~g~~~i~~~ 383 (625)
+|++++++++. +.+... ......+++.+.+.+ +..++ .+. .-.+..++.
T Consensus 243 iG~~~~~~~~~--~~~~~~------------------------~~~~~~~~s~~~q~a--~~~~l-~~~~~~~l~~~~~~ 293 (387)
T PRK08960 243 LGWLVAPPAAV--PELEKL------------------------AQNLYISASTPAQHA--ALACF-EPETLAILEARRAE 293 (387)
T ss_pred EEEEEcCHHHH--HHHHHH------------------------HhhhccCCCHHHHHH--HHHHh-hcCcHHHHHHHHHH
Confidence 89999988762 222110 011112223333221 22222 111 112344445
Q ss_pred HHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 384 EDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
..+.++.+.+.|++. ++.+. .+ .++.+.|.-.+.. ..+..++++.|.+++||.+++|..|+
T Consensus 294 ~~~~~~~l~~~L~~~-~~~~~~~p----~g~~f~~~~~~~~-------------~~~~~~~~~~ll~~~gi~v~pg~~f~ 355 (387)
T PRK08960 294 FARRRDFLLPALREL-GFGIAVEP----QGAFYLYADISAF-------------GGDAFAFCRHFLETEHVAFTPGLDFG 355 (387)
T ss_pred HHHHHHHHHHHHHhc-CCcCCcCC----CeeEEEEEecccc-------------CCCHHHHHHHHHHhCCEEEcCchHhC
Confidence 555677788888775 44432 22 2345544443321 12356788777667899999987764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.+ + .++++||+++. +.+.+...++.|++++
T Consensus 356 ~~--~------------------------~~~~iRi~~~~--~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 356 RH--Q------------------------AGQHVRFAYTQ--SLPRLQEAVERIARGL 385 (387)
T ss_pred CC--C------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 21 0 14799999984 5566666666665543
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=221.39 Aligned_cols=325 Identities=15% Similarity=0.071 Sum_probs=223.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+..++|+.+... ++|+.+++++.+.+... ... .|.. . -..++|+.+++++|.+.+++|++| +|+++++.
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~Y~~-~----~~~~lr~~ia~~~~~~~~~~I~~t-~G~~~~i~ 95 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEV---ALN-RYPD-P----RAAALKAALRAAMGVPAGADVLLG-NGSDELIQ 95 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhcc---ccc-cCCC-C----CHHHHHHHHHHHhCcCCCCcEEEc-CCHHHHHH
Confidence 468889877665 56789999998776320 000 1111 0 135688999999998754478887 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.+..++ +++||+ |+++.+.|..+...++..|++++.+++++++.+|+++|++++.. .++
T Consensus 96 ~~~~~~---------------~~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~----~~~ 154 (356)
T PRK04870 96 LLALAC---------------AKPGAT--VLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE----HRP 154 (356)
T ss_pred HHHHHh---------------cCCCCE--EEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc----CCC
Confidence 988876 478886 99999999988888888999999999987788999999999873 478
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC-cc-c-cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY-VK-I-NLRSRNIDGYDAIFLATHKFLGGPG-TPGILL 310 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~-~~-i-d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~ 310 (625)
+++++++++||||.+.+.+++.++++..++++++|+++..-. .. . .+... .-.+++.|++| ++.|+ .+|+++
T Consensus 155 ~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~vi~~~S~SK-~~~~GlRiG~~i 230 (356)
T PRK04870 155 ALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARF---PNLLVMRTVSK-LGLAGLRLGYLA 230 (356)
T ss_pred CEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhC---CCEEEEecchh-hhhHHHhhhhhh
Confidence 999999999999999999998888887789999999964211 11 0 11111 22467789999 66454 389999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
.++++. +.+...... .+...+.+.+ ....+.+....+...++.+..+++
T Consensus 231 ~~~~~i--~~~~~~~~~--------------------------~~~~~~~q~~---a~~~l~~~~~~~~~~~~~~~~~~~ 279 (356)
T PRK04870 231 GHPAWI--AELDKVRPP--------------------------YNVNVLTQAT---ALFALEHVDVLDAQAAQLRAERTR 279 (356)
T ss_pred CCHHHH--HHHHHccCC--------------------------CcCCHHHHHH---HHHHHhCHHHHHHHHHHHHHHHHH
Confidence 887762 222111100 0111122211 111211211245566677778888
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|+.++++.+..+ . +.+.+...+ +..++.+.| .++||.+++|..+..
T Consensus 280 l~~~L~~~~~~~~~~~----~-~~~~~~~~~-----------------~~~~~~~~l-~~~gI~v~~~~~f~~------- 329 (356)
T PRK04870 280 LAAALAALPGVTVFPS----A-ANFILVRVP-----------------DAAAVFDGL-KTRGVLVKNLSGMHP------- 329 (356)
T ss_pred HHHHHHhCCCcEECCC----C-CeEEEEECC-----------------CHHHHHHHH-HHCCEEEEECCCCCC-------
Confidence 9999988888876432 2 333333332 145677777 558999998765421
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++++||+++ +.+++++|+++|+++
T Consensus 330 --------------------~~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 330 --------------------LLANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred --------------------CCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 02489999998 899999999999875
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=222.48 Aligned_cols=321 Identities=16% Similarity=0.099 Sum_probs=217.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+... .+++.+.+++.+.+......|. ....+++++++++++++++ +|++| +|+++++..
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p~-----------~g~~~lr~~ia~~~~~~~~-~i~~t-~G~~~~l~~ 96 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDELALYPD-----------GYAPELRTKVAKHLGVDEE-QLLFG-AGLDEVIQM 96 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC-----------CcHHHHHHHHHHHhCCCHH-HEEEC-CCHHHHHHH
Confidence 34555433222 2456788888776532111111 1246688999999998776 89998 899999998
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++.++ +++||. |+++.++|+.+...+...|++++.+|++ ++.+|+++++++++ ++++
T Consensus 97 ~~~~~---------------~~~gd~--v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~-----~~~~ 153 (359)
T PRK03158 97 ISRAL---------------LNPGTN--TVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAID-----EQTK 153 (359)
T ss_pred HHHHH---------------hCCCCE--EEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcC-----CCCC
Confidence 88776 478885 9999999998877788889999999987 56789999998876 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
++++++|+||||.+.+.++|.++++. +|+++++|++++.... +..+.........+++.|++|.||.|+ .+|+
T Consensus 154 ~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 233 (359)
T PRK03158 154 IVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGY 233 (359)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhheh
Confidence 99999999999999999999999987 5999999999753221 111110011133577789999998554 3799
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
+++++++. +.+.... ...+++.+.+. ++.+++ .+....+.+.+..+..+
T Consensus 234 ~v~~~~~~--~~~~~~~--------------------------~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~~~~~~~ 282 (359)
T PRK03158 234 GIASEELI--EKLNIAR--------------------------PPFNTTRIAQY--AAIAAL-EDQAFLKECVEKNAEGL 282 (359)
T ss_pred hcCCHHHH--HHHHHhc--------------------------CCCCCCHHHHH--HHHHHh-cCHHHHHHHHHHHHHHH
Confidence 99887762 2221100 00122222221 112222 12222344555566667
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.+. ++.++.+. +.+.+...+ .+..++.+.|.+ +||.+++|..|+
T Consensus 283 ~~~~~~l~~~-~~~~~~~~-----g~~i~~~~~----------------~~~~~~~~~l~~-~gv~v~~g~~f~------ 333 (359)
T PRK03158 283 EQYYAFCKEY-GLFYYPSQ-----TNFIFVDTG----------------RDANELFEALLK-KGYIVRSGAALG------ 333 (359)
T ss_pred HHHHHHHHHC-CCeeCCCc-----CcEEEEECC----------------CCHHHHHHHHHH-CCeEEeeCCCCC------
Confidence 7788888776 66665331 334443322 135678888865 799999987663
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++||+++ +.+|+++++++|+++
T Consensus 334 -----------------------~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 334 -----------------------FPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred -----------------------CCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 1489999998 899999999999875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-23 Score=225.21 Aligned_cols=344 Identities=17% Similarity=0.135 Sum_probs=221.7
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.+.|..+...+. .++.+.+++.+.+..+..+.+. +..-+.......++++.|++++|.+ + .++|+ +|++++..
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~Le~~la~~~g~~-~-~i~~~-sG~~a~~~ 121 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGG--TRNISGTSHPHVLLERELADLHGKE-S-ALLFT-SGYVSNDA 121 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCch--hhhcccChHHHHHHHHHHHHHhCCC-C-EEEEC-cHHHHHHH
Confidence 3456666555555 4678999998887654322221 1111123334678999999999963 3 57775 89876444
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.+. .+. .+.+|+ +|+++..+|.++..+++..|++++.++.+ |.+++++.+.+. ..+++
T Consensus 122 ~i~-~l~-------------~~~~g~--~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~t 179 (410)
T PRK13392 122 ALS-TLG-------------KLLPGC--VILSDALNHASMIEGIRRSGAEKQVFRHN-----DLADLEEQLASV-DPDRP 179 (410)
T ss_pred HHH-HHh-------------cCCCCC--EEEEehhhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhc-cCCCC
Confidence 332 221 123666 48888889999988888889998877643 566777777531 12478
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc---CCC--CCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN---LRS--RNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id---~~~--~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
++|++++++||||.+.|+++|.++|++||+++++|+||+.|..... +.. ...+.+|+++.+++|+||.++ |++
T Consensus 180 ~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~ 257 (410)
T PRK13392 180 KLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYI 257 (410)
T ss_pred EEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc--chh
Confidence 9999999999999999999999999999999999999986543111 100 011357888899999998765 777
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
+.++++.. .+.....+ ..+..+.++. ...+.++++.. +.. ....++.+.++
T Consensus 258 ~~~~~~~~--~l~~~~~~----------------------~~~s~~~~~~~~~a~~aaL~~~--~~~--~~~~~~~~~~~ 309 (410)
T PRK13392 258 AASADLID--FVRSFAPG----------------------FIFTTALPPAVAAGATAAIRHL--KTS--QTERDAHQDRV 309 (410)
T ss_pred hcCHHHHH--HHHHhCcc----------------------hhccCcCCHHHHHHHHHHHHHH--hcC--HHHHHHHHHHH
Confidence 77776622 11110000 0011122222 22233455543 222 23345667778
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++ |+++..+ ..+++.+.+... ....++++.|.+++||.++++.....+.
T Consensus 310 ~~l~~~L~~~-g~~~~~~----~~~~~~i~~~~~---------------~~~~~~~~~L~~~~GI~v~~~~~p~~~~--- 366 (410)
T PRK13392 310 AALKAKLNAN-GIPVMPS----PSHIVPVMVGDP---------------TLCKAISDRLMSEHGIYIQPINYPTVPR--- 366 (410)
T ss_pred HHHHHHHHHc-CCCCCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHHhCCEEEeeeCCCCCCC---
Confidence 8899999876 6665533 345543333210 1135788888666899998754332111
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+++||+++.++|++|+++++++|+++.++
T Consensus 367 -----------------------~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 367 -----------------------GTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred -----------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999988665
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=220.87 Aligned_cols=339 Identities=12% Similarity=0.041 Sum_probs=223.5
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+... ++++.+.+++.+.+.....+ .|. ...-..++|+++++++|.+++ +|++| +|+++++..
T Consensus 29 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~----~y~----~~~g~~~lr~~ia~~l~~~~~-~v~~~-~g~t~al~~ 98 (380)
T PRK06225 29 EMIWMGQNTNHLGPHEEVREAMIRCIEEGEYC----KYP----PPEGFPELRELILKDLGLDDD-EALIT-AGATESLYL 98 (380)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCC----CCC----CCcchHHHHHHHHHhcCCCCC-cEEEe-CCHHHHHHH
Confidence 57778765443 45678888888877431111 111 112256789999999999876 89998 788899999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC---CCCCCHHHHHHHHHHhhhCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD---NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~~~ld~~~L~~~l~~~~~~~ 232 (625)
++.++ +.+||+ |+++.+.|......+...|++++.++++. ++.+|+++++++++ +
T Consensus 99 ~~~~~---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~-----~ 156 (380)
T PRK06225 99 VMRAF---------------LSPGDN--AVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD-----E 156 (380)
T ss_pred HHHHh---------------cCCCCE--EEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC-----C
Confidence 88876 467775 88888888877767788899999999743 35799999999887 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC---CCccccCCCCCCCCCcEEEEcCCCCCCCCC-C
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG---PYVKINLRSRNIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~---g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g 305 (625)
+++++++++++||||.+.+ +++|+++|+++|+++++|+++.. +.... .... ....+++.|++|++|.|+ .
T Consensus 157 ~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~-~~~~i~~~s~SK~~g~~G~R 233 (380)
T PRK06225 157 NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLA--AEYA-PEHTVTSYSFSKIFGMAGLR 233 (380)
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCch--hhcC-CCCEEEEeechhhcCCccce
Confidence 7899999999999999865 88899999999999999998531 11111 1110 133566779999997443 3
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+|++++++++. +.+.+.. ....+...+.+.+ +...+.....-.+.+.+..+
T Consensus 234 iG~i~~~~~l~--~~~~~~~-------------------------~~~~~~~~~~~~~--a~~~l~~~~~~~~~~~~~~~ 284 (380)
T PRK06225 234 IGAVVATPDLI--EVVKSIV-------------------------INDLGTNVIAQEA--AIAGLKVKDEWIDRIRRTTF 284 (380)
T ss_pred eEEEecCHHHH--HHHHHHH-------------------------hcccCCCHHHHHH--HHHHHhcchHHHHHHHHHHH
Confidence 79999988773 2221110 0011222222221 11111101111344555555
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
.+.+.+.+.|++++++.+.... ..+.+.+..++.. +++..++++.|. ++||.+++|..|....
T Consensus 285 ~~~~~l~~~L~~~~~~~~~~~~---~~g~~~~~~~~~~-------------~~~~~~l~~~l~-~~gi~v~~g~~~~~~~ 347 (380)
T PRK06225 285 KNQKLIKEAVDEIEGVFLPVYP---SHGNMMVIDISEA-------------GIDPEDLVEYLL-ERKIFVRQGTYTSKRF 347 (380)
T ss_pred HHHHHHHHHHHhCcCCccccCC---CCCeEEEEEcccc-------------cCCHHHHHHHHH-HCCEEEcCCcccCcCC
Confidence 6677777888877665432111 1233333333221 245678888886 5799999987664211
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
.++++|+|++. +++++++++++|++++++.+
T Consensus 348 --------------------------~~~~iR~s~~~--~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 348 --------------------------GDRYIRVSFSI--PREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred --------------------------CCceEEEEeCC--CHHHHHHHHHHHHHHHHHhh
Confidence 24799999873 78999999999999987654
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-23 Score=219.46 Aligned_cols=323 Identities=14% Similarity=0.070 Sum_probs=215.0
Q ss_pred ceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
.++.|+.+.. -.+++.+.+++.+.+......+.. ...++++.+++++|++++ +++++++|+++++..
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVE-NIIVGGDGMDEVIDT 102 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHH-HEEEeCCCHHHHHHH
Confidence 5777865532 234567788877665432222211 126789999999999876 788855899999988
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++.++ +++||+ |+++.+.|+.+...++..|++++.++.+.++.+|+++++++++ ++++
T Consensus 103 ~~~~~---------------~~~gd~--vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~ 160 (361)
T PRK00950 103 LMRTF---------------IDPGDE--VIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAIT-----EKTK 160 (361)
T ss_pred HHHHh---------------cCCCCE--EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc-----cCCC
Confidence 87776 468885 8888888887777788889999999977777899999999886 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
++++++++||||.+.|.++|.++|+++|+++++|+++.... ..+...+ .....-+++.|++|.+|.|+ .+|++++++
T Consensus 161 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~ 239 (361)
T PRK00950 161 VIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE 239 (361)
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCH
Confidence 99999999999999999999999999999999999976322 1111111 00012356679999998665 479998887
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
++.. .+.... . ..+.+.+.+ .++..++ .+....++..++.+.+++++.+
T Consensus 240 ~~~~--~~~~~~------------------------~--~~~~~~~~~--~~a~~~l-~~~~~~~~~~~~~~~~r~~l~~ 288 (361)
T PRK00950 240 WLID--YYMRAK------------------------T--PFSLTRLSQ--AAAIAAL-SDKEYIEKSIEHGIKSREYLYN 288 (361)
T ss_pred HHHH--HHHHhc------------------------C--CCCCCHHHH--HHHHHHh-cCHHHHHHHHHHHHHHHHHHHh
Confidence 7621 111000 0 001111111 1222222 1211234555666666677776
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|. +.+..+ .+.++.+.+ +. .+..++++.|.+ +||.+++|..+..
T Consensus 289 ~l~----~~~~~~----~~~~i~~~~-~~---------------~~~~~~~~~l~~-~gv~v~~~~~f~~---------- 333 (361)
T PRK00950 289 ELP----FKVYPS----EANFVLVDV-TP---------------MTAKEFCEELLK-RGVIVRDCTSFRG---------- 333 (361)
T ss_pred hcC----eeECCC----cceEEEEEC-CC---------------CCHHHHHHHHHH-CCEEEeeCCccCC----------
Confidence 665 444322 223333323 21 346788988865 7999998764420
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
..++++|||++ +.+|+++++++|++++
T Consensus 334 -----------------~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 334 -----------------LGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred -----------------CCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 12579999998 7899999999999864
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=218.07 Aligned_cols=338 Identities=15% Similarity=0.131 Sum_probs=219.1
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal 153 (625)
..+.|..+... .+++.+.+++.+.+... ..+ .|....+..++.+.+.+++++.+|.+ ++++|++| +|++++|
T Consensus 30 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t-~G~~~~l 104 (383)
T TIGR03540 30 DVISLGIGDPDLPTPKHIVEALCKAAENP--ENH--RYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSL-IGSKEGI 104 (383)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCC--CCC--CCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEEC-CCcHHHH
Confidence 44555544433 34667888887765321 001 12111223455666666666666663 33257887 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~ 231 (625)
..++..+ +++||. |+++.+.|+.+...++..|++++.+|++.+ ..+|++++++++.
T Consensus 105 ~~~~~~~---------------~~~gd~--vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~----- 162 (383)
T TIGR03540 105 AHIPLAF---------------VNPGDI--VLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA----- 162 (383)
T ss_pred HHHHHHh---------------CCCCCE--EEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc-----
Confidence 9998877 578885 999999999988888889999999999753 3579999998886
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC----CCccccCCCCC-CCCCcEEEEcCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVKINLRSRN-IDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~----g~~~id~~~~~-~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++|+||||.+.+ +++|+++|++||+++++|++++. +.....+..+. .....+++.|++|.||.|
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~ 242 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMT 242 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCc
Confidence 57999999999999999988 68889999999999999999752 21223332221 012346678999999755
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|+++.++++. +.+... ......+++...+. ++..++.......+.+++
T Consensus 243 GlRiG~~i~~~~l~--~~~~~~------------------------~~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~ 294 (383)
T TIGR03540 243 GWRIGMAVGNADLI--AGLGKV------------------------KTNVDSGVFQAIQY--AAIAALNGPQDVVKEIRK 294 (383)
T ss_pred cceeeEEeCCHHHH--HHHHHH------------------------HHhcccCCChHHHH--HHHHHHhCCHHHHHHHHH
Confidence 4 389999887762 221100 00111222222222 222222111112345566
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+..++.+.+.|.+. ++.++.+. ++.+.+...++ .++..++++.|.+++||.+++|..|.
T Consensus 295 ~~~~~~~~~~~~L~~~-~~~~~~~~----~~~~~~~~l~~--------------~~~~~~~~~~ll~~~gi~v~~g~~f~ 355 (383)
T TIGR03540 295 IYQRRRDLLLEALKKI-GIDVEKPK----ATFYVWVPVPE--------------GYTSAEFAARLLEETGVVVTPGVGFG 355 (383)
T ss_pred HHHHHHHHHHHHHHhC-CCEecCCC----cceEEEEECCC--------------CCCHHHHHHHHHHHCCEEEecchhhC
Confidence 6677788888999887 77776553 34444444332 23466788887667899999988764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.. .++++||+++ .++++++..++.|+
T Consensus 356 ~~---------------------------~~~~~Ris~~--~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 356 EY---------------------------GEGYIRISLT--VPDERLEEAVARIK 381 (383)
T ss_pred cc---------------------------CCCeEEEEec--CCHHHHHHHHHHHh
Confidence 11 2479999997 35677666666654
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=221.41 Aligned_cols=328 Identities=15% Similarity=0.131 Sum_probs=219.1
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+++.+.+++.+.+..... .|....+..++.+.+.+++.+.+| .+++ +|++| +|+++++..++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~-----~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l------ 113 (391)
T PRK08361 47 TPKNIKEAAKRALDEGWT-----HYTPNAGIPELREAIAEYYKKFYGVDVDVD-NVIVT-AGAYEATYLAFESL------ 113 (391)
T ss_pred CCHHHHHHHHHHHhcCCC-----CCCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEe-CChHHHHHHHHHHh------
Confidence 356777877765532110 111112234444555555554445 4444 89998 78888898888776
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+++|+. |+++.++|......+...|++++.++++.+ +.+|+++++++++ ++++++++++++|
T Consensus 114 ---------~~~g~~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-----~~~~~v~i~~p~N 177 (391)
T PRK08361 114 ---------LEEGDE--VIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELIT-----KRTRMIVINYPNN 177 (391)
T ss_pred ---------cCCCCE--EEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc-----cccEEEEEeCCCC
Confidence 478885 999999999988888888999999998763 4799999999887 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEecccc
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALY 316 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~ 316 (625)
|||.+.| +++|+++|+++++++++|++++... ....+.... ...++++.|++|.+|.|+ .+|++++++++.
T Consensus 178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~ 256 (391)
T PRK08361 178 PTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA-PDNTILANSFSKTFAMTGWRLGFVIAPEQVI 256 (391)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcC-CCCEEEEecCchhcCCcHhhhhhhccCHHHH
Confidence 9999999 7889999999999999999965321 111111111 134678899999998563 289999987762
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhh-cCCChhHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQIVQMIRAALAFWVKEYI---GYEVIKKQEDVYIESAL 392 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~aal~~~~~~~~---g~~~i~~~~~~l~~~l~ 392 (625)
..+... ... ..+.+.+.+. ++..++ .+.. ..+.++++.++.++.+.
T Consensus 257 --~~~~~~-------------------------~~~~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T PRK08361 257 --KDMIKL-------------------------HAYIIGNVASFVQI--AGIEAL-RSKESWKAVEEMRKEYNERRKLVL 306 (391)
T ss_pred --HHHHHH-------------------------HhhhccCCChHHHH--HHHHHh-cCCcccHHHHHHHHHHHHHHHHHH
Confidence 211000 000 1122222221 222222 1211 24566777777888899
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|++++++++..+. ++.+.+...+. .+++..++++.|.+++||.+++|..|...
T Consensus 307 ~~L~~~~~~~~~~p~----g~~~~~~~l~~-------------~~~~~~~l~~~l~~~~gv~v~pg~~f~~~-------- 361 (391)
T PRK08361 307 KRLKEMPHIKVFEPK----GAFYVFANIDE-------------TGMSSEDFAEWLLEKARVVVIPGTAFGKA-------- 361 (391)
T ss_pred HHHHhCCCCeecCCC----EEEEEEEECCC-------------CCCCHHHHHHHHHHhCCEEEcCchhhCCC--------
Confidence 999888888876653 34444444332 12346678888876789999988765311
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++. ++++++..++.|++++++
T Consensus 362 -------------------~~~~iRi~~~~--~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 362 -------------------GEGYIRISYAT--SKEKLIEAMERMEKALEE 390 (391)
T ss_pred -------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHhc
Confidence 24899999983 678888888888877643
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=219.20 Aligned_cols=337 Identities=10% Similarity=0.058 Sum_probs=219.3
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|+.+... ++++.+.+++.+.+... ....|. ..+..++.+.+.+++.+..|. +++++|++| +|++++|
T Consensus 33 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~----~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it-~G~~~al 106 (399)
T PRK07681 33 KMIDLSIGNPDMPPADFVREEMVHTANQK----ESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLL-MGSQDGL 106 (399)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcc----ccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEC-CCcHHHH
Confidence 34555444332 34667888887765321 110111 112344455555555555454 442478888 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.+.|+.+...++..|++++.++++++ ..+|++++++++.
T Consensus 107 ~~~~~~~---------------~~~Gd~--Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~----- 164 (399)
T PRK07681 107 VHLPMVY---------------ANPGDI--ILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA----- 164 (399)
T ss_pred HHHHHHh---------------CCCCCE--EEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc-----
Confidence 9998877 578886 999999999998888889999999999754 3679999998886
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++|+||||.+.+ +++|+++|++||+++|+|++++.-. ....+.... .....+++.|++|.+|.|
T Consensus 165 ~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 244 (399)
T PRK07681 165 DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLA 244 (399)
T ss_pred ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCc
Confidence 57999999999999999988 6778889999999999999976221 111221111 012346777999999755
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIK 381 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~ 381 (625)
+ .+|+++.++++. +.+.... .....+.+.+.+. ++..++ .+ ....+..+
T Consensus 245 GlRiG~~i~~~~l~--~~~~~~~------------------------~~~~~~~s~~~q~--~~~~~l-~~~~~~~~~~~ 295 (399)
T PRK07681 245 GSRIGYMIGNEEIV--RALTQFK------------------------SNTDYGVFLPIQK--AACAAL-RNGAAFCEKNR 295 (399)
T ss_pred cceeEEEecCHHHH--HHHHHHH------------------------hhcccCCCHHHHH--HHHHHH-hCcHHHHHHHH
Confidence 4 389999887762 2211000 0001122222221 122222 11 11233445
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+..++++.+.|.+. ++++..+ .++.+.|...++ .++..++++.|.+++||.+++|..|
T Consensus 296 ~~~~~~~~~l~~~L~~~-g~~~~~p----~~g~f~~~~l~~--------------~~~~~~~~~~l~~~~gv~v~pg~~f 356 (399)
T PRK07681 296 GIYQERRDTLVDGFRTF-GWNVDKP----AGSMFVWAEIPK--------------GWTSLSFAYALMDRANVVVTPGHAF 356 (399)
T ss_pred HHHHHHHHHHHHHHHHC-CCcccCC----CeeeEEEEECCC--------------CCCHHHHHHHHHHhCCEEEeCChhh
Confidence 55666677888888876 6766544 235555555442 2345678888877789999998766
Q ss_pred CchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 462 AGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
..+ .++++||+++ .++++++.+++.|++
T Consensus 357 ~~~---------------------------~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 357 GPH---------------------------GEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred CcC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 411 2489999998 468999999999987
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-23 Score=221.38 Aligned_cols=348 Identities=16% Similarity=0.139 Sum_probs=220.6
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHH-HHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHE-ASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~-~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
..+.|..+. .+.|+.|.+++...+...+ ++++.. +..+....+..++ +++.+++++|++.. .|+++ +|+. ++
T Consensus 26 ~~~~l~~~~-n~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~-~i~~~-sgt~-al 100 (416)
T PRK00011 26 EHIELIASE-NFVSPAVMEAQGSVLTNKYAEGYPGKR-YYGGCEYVDVVEQLAIDRAKELFGAEYA-NVQPH-SGSQ-AN 100 (416)
T ss_pred cCeeeeccc-CcCCHHHHHHHhchhhcccccCCCCcc-ccccchHHHHHHHHHHHHHHHHhCCCce-eeecC-CchH-HH
Confidence 345555444 3478899999877764333 344332 2233334444544 78899999999765 56665 6765 56
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-----HHcCCeEEEEecCC-CCCCCHHHHHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-----RQSLAEVVEIGLDD-NGLLDIEALRSQLEL 227 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-----~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~ 227 (625)
..++.++ +++||+ |+++.++|.++...+ ...|++++.++++. ++.+|+++|++++++
T Consensus 101 ~~~l~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~ 163 (416)
T PRK00011 101 AAVYFAL---------------LKPGDT--ILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE 163 (416)
T ss_pred HHHHHHh---------------cCCCCE--EEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh
Confidence 6676666 578886 999999987653221 23467888888874 578999999999974
Q ss_pred hhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCce
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPG 307 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G 307 (625)
.++++|++++. .+|...|+++|+++|+++|+++++|+||+.|............++|++++|+||+++||.| |
T Consensus 164 ----~~~k~v~~~~~--~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~g-g 236 (416)
T PRK00011 164 ----HKPKLIIAGAS--AYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG-G 236 (416)
T ss_pred ----cCCCEEEECCC--cCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCc-e
Confidence 37888888643 4577789999999999999999999999876542211111112579999999999987886 7
Q ss_pred EEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHH
Q 043646 308 ILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 308 ~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~ 384 (625)
+++.++ ++. +.+..... ....+++......+ +++... ...+.+.+.++.
T Consensus 237 ~i~~~~~~~~--~~l~~~~~------------------------~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~ 288 (416)
T PRK00011 237 LILTNDEELA--KKINSAVF------------------------PGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQV 288 (416)
T ss_pred EEEeCCHHHH--HHHHHHhC------------------------ccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHH
Confidence 888754 542 11111000 00112222222222 222221 123567778888
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+++++++++.|.++ |+++... .....++.+.+.+. .++...+.+.|. +.||.++.+...-..
T Consensus 289 ~~~~~~l~~~L~~~-g~~~~~~--~~~~~~~~i~~~~~--------------~~~~~~~~~~L~-~~GI~v~~~~~p~~~ 350 (416)
T PRK00011 289 VKNAKALAEALAER-GFRVVSG--GTDNHLVLVDLRSK--------------GLTGKEAEAALE-EANITVNKNAVPFDP 350 (416)
T ss_pred HHHHHHHHHHHHhC-CCeeeec--CCCCeEEEEeCccc--------------CCCHHHHHHHHH-HcCcEEccCcCCCCC
Confidence 99999999999886 7777631 11233444433211 234567888784 579999754321100
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY----YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~----~~t~edid~ll~aL~~~~~~ 522 (625)
... ..++.+|++... .++++|+++++++|++++..
T Consensus 351 -~~~----------------------~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 351 -RSP----------------------FVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred -CCC----------------------CCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 000 013568996532 46799999999999987664
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=219.37 Aligned_cols=342 Identities=16% Similarity=0.126 Sum_probs=222.2
Q ss_pred eEeccCCCCCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 78 LTYADHTASGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 78 ~~Yld~~~~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
+.+..+...+.. ++.|.+++.+++..+..+++. +...........++++.+++++|.+ . .+++ ++|+.++...+
T Consensus 48 ~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~g~~~~~~~Le~~la~~~g~~-~-~l~~-~sG~~an~~ai 122 (402)
T TIGR01821 48 TVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGG--TRNISGTNIPHVELEAELADLHGKE-S-ALVF-TSGYVANDATL 122 (402)
T ss_pred EEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcc--hhhhhCCcHHHHHHHHHHHHHhCCC-e-EEEE-CchHHHHHHHH
Confidence 344445555543 457999998888665333321 2112223556788999999999963 2 4555 48877744443
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
..+.. ..+++ +|+....+|.+...+++..|+++..++. .|++++++.++.. ..+++++
T Consensus 123 ~~l~~--------------~~~~~--~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~~~~ 180 (402)
T TIGR01821 123 ATLAK--------------IIPGC--VIFSDELNHASMIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSV-DPNRPKI 180 (402)
T ss_pred HHhhC--------------CCCCC--EEEEcchHhHHHHHHHHHcCCeEEEECC-----CCHHHHHHHHHhc-cCCCCeE
Confidence 22221 12444 4777778999998889888988776653 3788888888631 1136899
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc---cC-CCCC-CCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI---NL-RSRN-IDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i---d~-~~~~-~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
|++++++|++|.+.|+++|.++|++||+++++|+||+.|.... .. ...+ .+.+|++..+++|.||+++ |+++.
T Consensus 181 v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G--G~i~~ 258 (402)
T TIGR01821 181 IAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG--GYIAA 258 (402)
T ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC--ceeec
Confidence 9999999999999999999999999999999999998664211 10 1111 1246888889999998655 77777
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ-IVQMIRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~-~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
++++.. .+.....+ ..+..+.++ ....+.++++.+ +.. +.+.++.+.++++
T Consensus 259 ~~~~~~--~l~~~~~~----------------------~~~t~~~~~~~~aaa~aaL~~~--~~~--~~~~~~~~~~~~~ 310 (402)
T TIGR01821 259 SRKLID--AIRSYAPG----------------------FIFTTSLPPAIAAGATASIRHL--KES--QDLRRAHQENVKR 310 (402)
T ss_pred CHHHHH--HHHHhCcC----------------------ceecCcCCHHHHHHHHHHHHHh--hcC--HHHHHHHHHHHHH
Confidence 777622 11100000 001112222 233334555554 222 4555666778999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|+++ ++.++.+ .++++.+.+... ....++.+.|.+++||.+++...++.+.
T Consensus 311 l~~~L~~~-g~~~~~~----~~~i~~i~~~~~---------------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~----- 365 (402)
T TIGR01821 311 LKNLLEAL-GIPVIPN----PSHIVPVIIGDA---------------ALCKKVSDLLLNKHGIYVQPINYPTVPR----- 365 (402)
T ss_pred HHHHHHHc-CCCcCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHhcCCEEEEeECCCCCCC-----
Confidence 99999876 6665543 345655543210 0134688887666799998754433221
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
...++||+++.++|++|+++++++|++++++
T Consensus 366 ---------------------g~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 366 ---------------------GTERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred ---------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999998765
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=213.53 Aligned_cols=324 Identities=14% Similarity=0.071 Sum_probs=218.3
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
..-|+.+... ++|+.+.+++.+.+... ....|. . ....++|+.++++++++++ +|++| +|++++|..+
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~----~~~~y~-~----~~~~~lr~~ia~~~~~~~~-~i~it-~G~~~~l~~~ 92 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKSS----QVNIYP-D----PTAEKLREELARYCSVVPT-NIFVG-NGSDEIIHLI 92 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhcC----cccCCC-C----ccHHHHHHHHHHHhCCCcc-cEEEe-cCHHHHHHHH
Confidence 3556655554 46788999987766321 111111 1 1136789999999999876 89998 8999999998
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
+.++ +++||+ |+++.+.|..+...++..|++++.+++++++.+|+++++++++. .++++
T Consensus 93 ~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~----~~~k~ 151 (351)
T PRK14807 93 MLAF---------------INKGDV--VIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK----YQPKL 151 (351)
T ss_pred HHHh---------------cCCCCE--EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc----cCCCE
Confidence 8876 578886 88888888877777788899999999987778999999999873 37999
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCC-CCCCCCcEEEEcCCCCCCCCC-CceEEEEecc
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRS-RNIDGYDAIFLATHKFLGGPG-TPGILLISKA 314 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~-~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~ 314 (625)
+++++++||||.+.+.+++.+++++++.++++|+++..-+ .-.... .....-.+++.|++|.+|.|+ .+|+++.+++
T Consensus 152 v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~ 230 (351)
T PRK14807 152 VFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFY-GNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANEN 230 (351)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhc-ccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHH
Confidence 9999999999999999999999999889999999974211 100100 111122477789999998554 4899998877
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+.. .+.... . ....+.+.+. ++..++ +....++..++.+..++++.+.
T Consensus 231 ~~~--~~~~~~------------------------~--~~~~~~~~q~--~~~~~l--~~~~~~~~~~~~~~~r~~l~~~ 278 (351)
T PRK14807 231 ILK--YLNLVK------------------------S--PYNINSLSQV--IALKVL--RTGVLKERVNYILNERERLIKE 278 (351)
T ss_pred HHH--HHHHcc------------------------C--CCCcCHHHHH--HHHHHH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 622 111000 0 0111122221 222222 1122344445566667788888
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|.+++++.+..+ . +.+.+...+ +..++++.|.+ +||.++.+.... +
T Consensus 279 l~~~~g~~~~~~----~-~~~~~i~~~-----------------~~~~~~~~l~~-~gV~v~~~~~~~--------~--- 324 (351)
T PRK14807 279 LSKIPGIKVYPS----K-TNFILVKFK-----------------DADYVYQGLLE-RGILVRDFSKVE--------G--- 324 (351)
T ss_pred HHhCCCcEECcC----C-ccEEEEEcC-----------------CHHHHHHHHHH-CCEEEEECCCCC--------C---
Confidence 887788876432 2 333333322 14577888755 799998532110 0
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||+++ +.++.++++++|++++
T Consensus 325 -----------------~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 325 -----------------LEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred -----------------CCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 2478999997 7899999999998753
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=217.34 Aligned_cols=329 Identities=16% Similarity=0.105 Sum_probs=219.6
Q ss_pred chHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 89 SLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
.++.+.+++.+.+... +..+. +....+..++.+++++++++++|.+ + +|++| +|+++ +..++.++
T Consensus 57 ~~~~i~~a~~~~~~~~~~~~~~---~~~~~G~~~l~~~l~~~la~~~g~~-~-~i~~t-sG~~a-~~~~~~~l------- 122 (397)
T PRK06939 57 NHPELIAAAKAALDSHGFGMAS---VRFICGTQDLHKELEEKLAKFLGTE-D-AILYS-SCFDA-NGGLFETL------- 122 (397)
T ss_pred CCHHHHHHHHHHHHHcCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC-c-EEEEc-ChHHH-HHHHHHHh-------
Confidence 5778888888877542 11111 1111234567889999999999975 3 67787 67554 44455554
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCeEEEEecccCcc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPMLGSFSACSNVT 246 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv~~~~~~n~T 246 (625)
+++||. |+++.++|+++...++..|++++.++. .|++++++++++.. ...++++|+..++.|++
T Consensus 123 --------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~ 187 (397)
T PRK06939 123 --------LGKEDA--IISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMD 187 (397)
T ss_pred --------CCCCCE--EEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCC
Confidence 578885 999999999998888888998887764 48899998886421 11378899999999999
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc----CCCCC-CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC
Q 043646 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN----LRSRN-IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS 321 (625)
Q Consensus 247 G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id----~~~~~-~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~ 321 (625)
|.+.++++|.++|++||+++++|++++.+....+ ..... ..++|+++.|+||+++++. .|++++++++. +.+
T Consensus 188 G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~--~~l 264 (397)
T PRK06939 188 GDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEVI--DWL 264 (397)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHHH--HHH
Confidence 9999999999999999999999999976543221 11111 1257899999999997665 59999887763 222
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCC--hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT--PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
..... . . ...++ +.....+.+++++. +. .+.++++.+.+++++.+.|.++
T Consensus 265 ~~~~~---~-------------------~-~~~~~~~~~~~~a~~~al~~~--~~--~~~~~~~~~~~~~~l~~~L~~~- 316 (397)
T PRK06939 265 RQRSR---P-------------------Y-LFSNSLAPAIVAASIKVLELL--EE--SDELRDRLWENARYFREGMTAA- 316 (397)
T ss_pred HHhCc---c-------------------c-cccCCCCHHHHHHHHHHHHHH--hc--CHHHHHHHHHHHHHHHHHHHHc-
Confidence 11000 0 0 00112 22222223344443 21 2466778888899999999876
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLE 479 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~ 479 (625)
++++..+ ..+++.+..... .+..++++.|.++ ||.+.++.++..+.
T Consensus 317 ~~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~L~~~-gI~v~~~~~~~~~~-------------- 362 (397)
T PRK06939 317 GFTLGPG----EHPIIPVMLGDA---------------KLAQEFADRLLEE-GVYVIGFSFPVVPK-------------- 362 (397)
T ss_pred CCCcCCC----CCCEEEEEECCH---------------HHHHHHHHHHHHC-CceEeeeCCCCCCC--------------
Confidence 5554432 234443332111 1245788888775 99998544321110
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++|++++++++++|+++++++|++++++.
T Consensus 363 ------------~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 363 ------------GQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred ------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 13689999999999999999999999887653
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=216.86 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=215.7
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~ 154 (625)
.+.|+.+... ++++.+.+++.+.+... ... .|....+..++.+.+.+++.+.+|. ++++.|++| +|+++++.
T Consensus 33 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t-~G~~~~i~ 107 (385)
T PRK09276 33 VISLGIGDPDLPTPDHIIEAMCKAVEDP--ENH--QYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISL-IGSKEGIA 107 (385)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHhCC--CCC--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEc-cCcHHHHH
Confidence 4455544433 34667888887766421 011 1211112344555566666655565 343357877 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~ 232 (625)
.++..+ +++||+ |+++.+.|+.+...++..|++++.++++.+ ..+|++++++++. +
T Consensus 108 ~~~~~~---------------~~~gd~--Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~-----~ 165 (385)
T PRK09276 108 HIPLAF---------------VNPGDV--VLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA-----K 165 (385)
T ss_pred HHHHHh---------------CCCCCE--EEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc-----c
Confidence 998877 578886 999999999888888889999999998743 4589999988876 5
Q ss_pred CCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (625)
++++|++++|+||||.+.+. ++|+++|++||+++++|+++.... ....+..+. ..+..+++.|++|.||.|+
T Consensus 166 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 166 KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc
Confidence 78999999999999999884 788889999999999999976321 112222221 0133567789999998554
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|+++.++++. +.+.... .....+.+...+. ++..++.......+.++++
T Consensus 246 lRiG~~i~~~~l~--~~~~~~~------------------------~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~ 297 (385)
T PRK09276 246 WRIGFAVGNADLI--AGLGKVK------------------------SNVDSGVFQAIQE--AGIAALNGPQEVVEELRKI 297 (385)
T ss_pred hhheeeeCCHHHH--HHHHHHH------------------------hhccCCCCHHHHH--HHHHHHcCcHHHHHHHHHH
Confidence 389999887762 2221100 0001112212221 1222221111123455666
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+..++++.+.|+++ +++++.+. ++.+.+...++ .++..++++.|.+++||.+++|..|..
T Consensus 298 ~~~~~~~l~~~L~~~-~~~~~~~~----~~~~~~v~~~~--------------~~~~~~l~~~ll~~~gi~v~~g~~f~~ 358 (385)
T PRK09276 298 YQERRDILVEGLRKL-GLEVEPPK----ATFYVWAPVPK--------------GYTSAEFATLLLDKAGVVVTPGNGFGE 358 (385)
T ss_pred HHHHHHHHHHHHHhC-CCcccCCC----cceEEEEECCC--------------CCCHHHHHHHHHHhCCEEECCchhhCC
Confidence 677788888999886 67766542 34444443332 234667888876668999999876641
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
+ .++++||+++ .+++++...++.|.
T Consensus 359 ~---------------------------~~~~~Ris~~--~~~~~l~~~l~~l~ 383 (385)
T PRK09276 359 Y---------------------------GEGYFRIALT--VPDERIEEAVERIK 383 (385)
T ss_pred C---------------------------CCCeEEEEeC--CCHHHHHHHHHHHh
Confidence 1 2479999997 36677666666654
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=201.58 Aligned_cols=404 Identities=16% Similarity=0.163 Sum_probs=292.2
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCCC-ccc-----cCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh
Q 043646 42 DHHPPHSKPSEEKLAWLRSQIIGND-VEF-----DYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV 115 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~~lr~~~~~~~-~~~-----~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~ 115 (625)
|+......+.++.++.+|..|.... ..+ .-..-..+.+||-.++.|.+|+.+.+.+.+.+..+..-. ...+..
T Consensus 26 d~~~Al~Ld~~d~l~~~Rd~F~iPk~~~lp~~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~a-v~gH~~ 104 (465)
T KOG3846|consen 26 DMEKALELDGSDYLESLRDEFNIPKFKSLPDADPSLVSDDKPVIYLCGNSLGLMPKSTRNSINAELDKWAKCA-VEGHFK 104 (465)
T ss_pred CHHHHhhcCcchhHHHHHHHhcCCccccCCCCCccccCCCCCeEEEeccccccCchhhHhHHHHHHHHHHhhh-hhcccc
Confidence 4444445667899999999886321 001 011123578999999999999999999988885432111 111112
Q ss_pred hHH-HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCC----
Q 043646 116 GQR-MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPY---- 189 (625)
Q Consensus 116 ~~~-~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~---- 189 (625)
|.. +....+-+...++..+|+... +|.++ ++-|.+|+.++..|- +|. .+..|+...-
T Consensus 105 GkvPW~~~De~il~l~~~iVGA~e~-Evavm-NsLTvNlh~Ll~sFy---------------KPTekR~KILlE~kaFPS 167 (465)
T KOG3846|consen 105 GKVPWVSIDEPILPLLAPIVGAQEN-EVAVM-NSLTVNLHSLLISFY---------------KPTEKRFKILLEKKAFPS 167 (465)
T ss_pred cccceeecchhhhhhhhhhccCCch-hhhhH-hhhhhHHHHHHHHhc---------------CCcchhhhhhhccCCCCc
Confidence 221 223345567788999999877 78887 789999999988772 222 2334666544
Q ss_pred CCchhHHHHHHcCCeE----EEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCC
Q 043646 190 EHHSNLLSWRQSLAEV----VEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGG 264 (625)
Q Consensus 190 ~h~s~~~~~~~~G~~v----v~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~ 264 (625)
.|++....++..|..+ +.+...+ ...+..+++...|.. .++...+|+|+.++..||...++.+|...-+..|+
T Consensus 168 DhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEk--ngDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc 245 (465)
T KOG3846|consen 168 DHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEK--NGDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGC 245 (465)
T ss_pred hHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHh--cCCeEEEEEeecceeecccccchhhhhhcccCCCc
Confidence 4555555566677753 2333222 336777888888873 34568899999999999999999999966666899
Q ss_pred EEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCC-CCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 265 FACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL-GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 265 ~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~l-ggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
+|-+|-||++|.+++.++.| ++||.|++.+|++ .|++|+|.+++..+. .....|...||+......+|.++...
T Consensus 246 ~VGfDLAHAvgNVpL~LHdW---gVDFACWCSYKYlnaGaGgIgGlFvHekh--~~~~~prl~GWwgh~~s~RF~Mdnvl 320 (465)
T KOG3846|consen 246 LVGFDLAHAVGNVPLQLHDW---GVDFACWCSYKYLNAGAGGIGGLFVHEKH--TKESLPRLAGWWGHDPSKRFQMDNVL 320 (465)
T ss_pred EechhhhhhhcCCceEEeec---CCceEEEeeecccccCCCccceeeeehhh--hcchhhHHhhhccCCcchhhhhcccc
Confidence 99999999999999999999 9999999999999 457889999999888 55677888999887777777776666
Q ss_pred cccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC-----------CcEEEeCCCC-C
Q 043646 344 YLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN-----------QNIQVLGNTS-V 409 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l-----------~gv~v~~~~~-~ 409 (625)
.+.+...+|+...|++...+ +..++.+ .+..+++++.+...++.|+...++.. +-+.++.|.. .
T Consensus 321 ~lipGa~GfRiSNPpi~~v~al~~SLe~F--~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~ 398 (465)
T KOG3846|consen 321 ELIPGALGFRISNPPIIDVVALRSSLELF--AQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTD 398 (465)
T ss_pred ccCccccccccCCCcHhHHHHHHhhHHHH--HHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccc
Confidence 67777788888999988765 4556655 55668899999988888887776543 2356666654 4
Q ss_pred CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 410 KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 410 ~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
.|+..++.....+ ...+...|.+ +|+....
T Consensus 399 erGcQLsl~Fssp-----------------~~~vfqeL~k-rGv~~Dk-------------------------------- 428 (465)
T KOG3846|consen 399 ERGCQLSLYFSSP-----------------TPKVFQELHK-RGVIGDK-------------------------------- 428 (465)
T ss_pred cccceEEEEeCCC-----------------chHHHHHHHH-cCeeccc--------------------------------
Confidence 5666666665432 2367777754 5665431
Q ss_pred CCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 490 GVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 490 g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..|+.||+++ +.|++..|+..++++|.+++...
T Consensus 429 -R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 429 -RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred -cCCCceEeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 1578999997 89999999999999999987653
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=217.02 Aligned_cols=313 Identities=15% Similarity=0.049 Sum_probs=212.8
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
+++.+.+++.+.+......+.. ...++|+.+++++|++++ +|++| +|+++++..++.++
T Consensus 46 ~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~t-~G~~~~l~~~~~~l-------- 104 (367)
T PRK02731 46 PSPKAIEAIRAAADELHRYPDG-----------SGFELKAALAEKFGVDPE-RIILG-NGSDEILELLARAY-------- 104 (367)
T ss_pred CCHHHHHHHHHHHHhhcCCCCC-----------cHHHHHHHHHHHhCcCHH-HEEEc-CCHHHHHHHHHHHh--------
Confidence 3566888887765332212211 024689999999999766 89998 89999998888776
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||. |+++.+.|..+...++..|++++.++.+ ++.+|+++++++++ +++++|++++++||||.
T Consensus 105 -------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~-----~~~~~v~l~~p~nptG~ 169 (367)
T PRK02731 105 -------LGPGDE--VIYSEHGFAVYPIAAQAVGAKPVEVPAK-DYGHDLDAMLAAVT-----PRTRLVFIANPNNPTGT 169 (367)
T ss_pred -------cCCCCE--EEEecCCHHHHHHHHHHcCCeEEEeccc-CCCCCHHHHHHHhC-----CCCcEEEEeCCCCCCCc
Confidence 467885 8888888877766677789999999984 46789999999886 57899999999999999
Q ss_pred ccCHHHHHHHHHHc--CCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCC
Q 043646 249 YSDTRSIARLLHQY--GGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSS 321 (625)
Q Consensus 249 ~~~l~~I~~la~~~--g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~ 321 (625)
+.|.++|.++++.+ |+++++|+++..... ...+.......-.+++.|+.|.+|.|+ .+|++++++++. +.+
T Consensus 170 ~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~--~~l 247 (367)
T PRK02731 170 YLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEII--DAL 247 (367)
T ss_pred CCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHH--HHH
Confidence 99999999999875 899999999653221 111110111122356678999987554 479999988762 222
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
.... ..+ +.+.+.+ .++.+++ ......+.+.++.+.+.+++.+.|.+. ++
T Consensus 248 ~~~~------------------------~~~--~~~~~~~--~~a~~~l-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 297 (367)
T PRK02731 248 NRVR------------------------QPF--NVNSLAL--AAAVAAL-DDDAFVEKSRALNAEGMAWLTEFLAEL-GL 297 (367)
T ss_pred HHcc------------------------CCC--CCCHHHH--HHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 1110 000 1111111 2223333 122235567777777888888988876 66
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 402 QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 402 ~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
.+..+ .++++.+.+ +. ..+..++++.|.+ +||.++++..++
T Consensus 298 ~~~~~----~g~~~~i~~-~~--------------~~~~~~~~~~L~~-~gI~v~~~~~~~------------------- 338 (367)
T PRK02731 298 EYIPS----VGNFILVDF-DD--------------GKDAAEAYQALLK-RGVIVRPVAGYG------------------- 338 (367)
T ss_pred ccCCC----CceEEEEEC-CC--------------CCCHHHHHHHHHH-CCEEEEeCCCCC-------------------
Confidence 65422 234444433 21 1246788888865 799999875432
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +.+|+++++++|++++.
T Consensus 339 ----------~~~~iRis~~---~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 339 ----------LPNALRITIG---TEEENRRFLAALKEFLA 365 (367)
T ss_pred ----------CCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence 1478999997 78999999999998764
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=219.72 Aligned_cols=342 Identities=16% Similarity=0.100 Sum_probs=226.0
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+-+.|..+...+. ..+.|.+++.+++..+..+++. +...........++++.+++++|.+ ..++|+ +|++++..
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~le~~la~~~g~~--~~~~~~-SG~~An~~ 120 (406)
T PRK13393 46 EVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGG--TRNISGTNHYHVLLEAELADLHGKE--AALLFT-SGYVSNWA 120 (406)
T ss_pred cEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHhCCC--cEEEeC-CcHHHHHH
Confidence 4467777878887 5678999999988765333321 1111123456788999999999963 245665 88876444
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.+ ..+. ...+++ +|++...+|.++..+++..|++++.++. .|++++++.+... ..+++
T Consensus 121 ai-~~l~-------------~~~~g~--~I~~~~~~H~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~~ 178 (406)
T PRK13393 121 AL-STLG-------------SRLPGC--VILSDELNHASMIEGIRHSRAEKRIFRH-----NDPADLERKLSDL-DPHRP 178 (406)
T ss_pred HH-HHhh-------------cCCCCC--EEEEccchhHHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHhc-cCCCC
Confidence 33 3221 012555 5888889999999999988998887764 3788888877631 11367
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc-ccc--C-CCCC-CCCCcEEEEcCCCCCCCCCCceEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-KIN--L-RSRN-IDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~-~id--~-~~~~-~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
++|++++++|++|.+.|+++|.++|+++|+++++|++|+.|.. +.. + ...+ .+.+|+++.++.|.+|.++ |++
T Consensus 179 ~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G--G~~ 256 (406)
T PRK13393 179 KLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG--GYI 256 (406)
T ss_pred EEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC--cee
Confidence 8999999999999999999999999999999999999986652 111 1 0000 1246888889999998655 777
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhh--hcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER--ENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~--~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.++++.. .+... ... +..+. |.....+.++++.. +..+. .+++.++
T Consensus 257 ~~~~~~~~--~l~~~------------------------~~~~~~t~~~~p~~~aa~~aaL~~~--~~~~~--~~~~~~~ 306 (406)
T PRK13393 257 TGSAALCD--FIRSF------------------------ASGFIFTTSLPPAVAAGALASVRHL--KASSA--ERERHQD 306 (406)
T ss_pred eCCHHHHH--HHHHh------------------------CcCceecCccCHHHHHHHHHHHHHH--hhCHH--HHHHHHH
Confidence 77766521 11110 011 11112 22233344556654 22222 2345567
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++++.|.++ ++.++.+ .++++.+.+... .....+.+.|.+++||.++++...+.|.
T Consensus 307 ~~~~l~~~L~~~-g~~~~~~----~~~i~~v~~~~~---------------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~- 365 (406)
T PRK13393 307 RVARLRARLDKA-GIPHLPN----PSHIVPVMVGDP---------------VLCKQISDELLDRYGIYVQPINYPTVPR- 365 (406)
T ss_pred HHHHHHHHHHHc-CCCcCCC----CCCeEEEEeCCH---------------HHHHHHHHHHHHhCCEEEEeECCCCCCC-
Confidence 788899988775 5554432 345665543210 1135688888766799998765433221
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+.+||+++.++|++|+++++++|++++.+
T Consensus 366 -------------------------g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 366 -------------------------GTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred -------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 1367999999999999999999999998765
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=215.60 Aligned_cols=333 Identities=12% Similarity=0.032 Sum_probs=223.5
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|+.+.+++.+.+... .. .|....+..++.+.+.+++.+..|.+ ++++|++| +|+++++..++..+
T Consensus 68 ~~~~~~~~~~~~~~~~----~~-~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt-~G~~~al~~~~~~l------ 135 (413)
T PLN00175 68 GPDFVKEAAIQAIRDG----KN-QYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVT-SGCTEAIAATILGL------ 135 (413)
T ss_pred CCHHHHHHHHHHHhcC----CC-CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEe-CCHHHHHHHHHHHh------
Confidence 4677888887766431 11 12223345566677777777766753 33368888 78999998888776
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
+++||+ |++..+.|+.+...++..|++++.++++. ++.+|+++|++++. +++++|++++++||
T Consensus 136 ---------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~-----~~~k~i~i~~p~NP 199 (413)
T PLN00175 136 ---------INPGDE--VILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT-----SKTRAILINTPHNP 199 (413)
T ss_pred ---------CCCCCE--EEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC-----cCceEEEecCCCCC
Confidence 578986 89899999998888899999999999975 56899999999987 57999999999999
Q ss_pred cccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCC-CCCCcEEEEcCCCCCCCCC-CceEEEEeccccc
Q 043646 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRN-IDGYDAIFLATHKFLGGPG-TPGILLISKALYQ 317 (625)
Q Consensus 246 TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~ 317 (625)
||.+.+ +++|+++|++||+++++|+++..... ...+..+. .....+++.|++|.|+.|+ .+|++++++++.
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~- 278 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLT- 278 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHH-
Confidence 999976 67789999999999999999653221 11222211 1133577789999998665 489999988772
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
..+... ......+++.+.+.+ +..++.......+.++++.+..++.+.+.|.+
T Consensus 279 -~~l~~~------------------------~~~~~~~~s~~~Q~a--~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (413)
T PLN00175 279 -WGVRQA------------------------HSFLTFATATPMQWA--AVAALRAPESYYEELKRDYSAKKDILVEGLKE 331 (413)
T ss_pred -HHHHHH------------------------HhhccCCCCHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211000 000112333333322 22222111112455666777778888899987
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC-ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL-HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
. ++.+..+. ++.+.|...... ++ +..++++.|.+++||.+.+|..|.....
T Consensus 332 ~-g~~~~~p~----g~~f~~~~~~~~-------------~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~---------- 383 (413)
T PLN00175 332 V-GFKVYPSS----GTYFVMVDHTPF-------------GFENDIAFCEYLIEEVGVAAIPPSVFYLNPE---------- 383 (413)
T ss_pred C-CCeecCCC----eeEEEEEecccc-------------CCCCHHHHHHHHHHhCCEEEeCchHhCCCCC----------
Confidence 6 67766542 455544433211 12 2467888887778999998876531000
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
...+++||+++. ++++++..++.|+++++
T Consensus 384 --------------~~~~~iRls~~~--~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 384 --------------DGKNLVRFAFCK--DEETLRAAVERMKTKLK 412 (413)
T ss_pred --------------CCCCEEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 024799999983 78999999999987754
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=215.71 Aligned_cols=318 Identities=13% Similarity=0.089 Sum_probs=218.9
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+..+|||.+... ++|+.+.+++.+.+... + .|.. . ...++|+.|++++|.+++ +|++| +|++.+|.
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~----~Y~~----~-~~~~Lr~aia~~~~v~~e-~I~it-~Gs~~ai~ 109 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALS--G----RYDL----E-LEDDLRTLFAAQEGLPAD-HVMAY-AGSSEPLN 109 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHh--c----CCCC----c-hHHHHHHHHHHHhCcChh-hEEEc-CChHHHHH
Confidence 467899988765 45788899887765321 1 1211 1 156688899999999877 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||+ |+++.++|+.+...++..|++++.++.+.++.+|++++++. . +++
T Consensus 110 ~~~~~l---------------~~~gd~--Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~-----~~~ 166 (370)
T PRK09105 110 YAVLAF---------------TSPTAG--LVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-D-----PNA 166 (370)
T ss_pred HHHHHH---------------cCCCCE--EEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-C-----CCC
Confidence 998887 478886 99999999999888889999999999987778999998765 2 468
Q ss_pred eEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCC-Ccc--ccCCCCCCCCCc-EEEEcCCCCCCCCC-Cce
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGP-YVK--INLRSRNIDGYD-AIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g-~~~--id~~~~~~~~~D-~v~~S~hK~lggp~-g~G 307 (625)
+++++++|+||||.+.+.++|.++++. +|+++++|+++..- ..+ .++.. ...+ +++.|++|.+|.|+ .+|
T Consensus 167 ~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~---~~~~vi~~~SfSK~~g~~GlRiG 243 (370)
T PRK09105 167 GLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVA---QRKDLIVLRTFSKLYGMAGMRLG 243 (370)
T ss_pred CEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHh---hCCCEEEEecccHhhcCCcccee
Confidence 999999999999999999998888764 48999999996421 111 11111 1234 45569999998554 389
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
+++.++++. +.+.+. ....++.... .++.+.+. +....+...++....
T Consensus 244 ~~v~~~~~i--~~l~~~----------------------------~~~~~~~~~~-~aa~~~L~-~~~~~~~~~~~~~~~ 291 (370)
T PRK09105 244 LAAARPDLL--AKLARF----------------------------GHNPLPVPAA-AAGLASLR-DPKLVPQRRAENAAV 291 (370)
T ss_pred eeecCHHHH--HHHHhc----------------------------CCCCcCHHHH-HHHHHHHh-CHHHHHHHHHHHHHH
Confidence 999987762 222111 0011222221 22222221 222244556677777
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ ++++..+. ++.+. ...+ .+..++++.|.+ +||.++.+ |. .
T Consensus 292 r~~l~~~L~~~-g~~~~~~~----~~f~~-~~~~----------------~~~~~l~~~L~~-~gI~v~~~--~~-~--- 342 (370)
T PRK09105 292 REDTIAWLKKK-GYKCTPSQ----ANCFM-VDVK----------------RPAKAVADAMAK-QGVFIGRS--WP-I--- 342 (370)
T ss_pred HHHHHHHHHHC-CCCcCCCC----CcEEE-EeCC----------------CCHHHHHHHHHH-CCcEEecC--CC-C---
Confidence 88888888876 66665442 33332 2111 135678888866 59998422 21 0
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||+++ +++++++++++|+++.
T Consensus 343 ------------------------~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 343 ------------------------WPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred ------------------------CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 1489999998 7899999999999875
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-23 Score=217.77 Aligned_cols=297 Identities=13% Similarity=0.002 Sum_probs=202.7
Q ss_pred HHHHHHHHHHhC-CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 124 HEASNYIKRCLG-GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 124 ~~~~~~ia~~~g-~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.++|+.|+++++ .+++ +|++| +|+++++..++.++ +++||+ |+++.+.|.+....++..|
T Consensus 65 ~~lr~~ia~~~~~~~~~-~vi~t-~G~~~al~~~~~~l---------------~~~gd~--Vl~~~P~y~~~~~~~~~~g 125 (373)
T PRK07324 65 PEFKEAVASLYQNVKPE-NILQT-NGATGANFLVLYAL---------------VEPGDH--VISVYPTYQQLYDIPESLG 125 (373)
T ss_pred HHHHHHHHHHhcCCChh-hEEEc-CChHHHHHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcC
Confidence 458888888875 4555 89998 78899899888876 578886 8888889988887888899
Q ss_pred CeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 203 AEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 203 ~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
++++.++++.+ ..+|+++++++++ ++++++++++++||||.+.+ +++|+++|++||+++++|++++.-..
T Consensus 126 ~~v~~v~~~~~~~~~~d~~~l~~~~~-----~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~ 200 (373)
T PRK07324 126 AEVDYWQLKEENGWLPDLDELRRLVR-----PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDE 200 (373)
T ss_pred CEEEEEecccccCCCCCHHHHHHhCC-----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccc
Confidence 99999998753 3589999988876 58999999999999999988 88899999999999999999653111
Q ss_pred cccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 278 KINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 278 ~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
....... ....-.+++.|++|.+|.|+ .+|++++++++. ..+..... ....+
T Consensus 201 ~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li--~~~~~~~~------------------------~~~~~ 254 (373)
T PRK07324 201 DGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVI--DILRKYRD------------------------YTMIC 254 (373)
T ss_pred CCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHH--HHHHHHhC------------------------cEEec
Confidence 1111111 01122466779999998554 389999977662 22211100 00011
Q ss_pred ChhHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 356 TPQIVQMIRAALAFWVKE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
.+.+.+.++ ...+ .. ..-.+..++..+..++.+.+.|.+.+++.+..|. ++.+.|...+.
T Consensus 255 ~~~~~q~~a--~~~l-~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~----gg~~~~i~~~~------------ 315 (373)
T PRK07324 255 AGVFDDMLA--SLAL-EHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPK----AVSTSFVKLDV------------ 315 (373)
T ss_pred CChHHHHHH--HHHH-cCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCC----ceEEEEEEeCC------------
Confidence 222222211 1111 11 1112344455555677788888877777776653 34444444432
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
.++..++++.|++++||.+++|..|. .++++|||++. +++.++..++
T Consensus 316 --~~~~~~~~~~ll~~~gv~v~pg~~F~-----------------------------~~~~iRis~~~--~~~~l~~~l~ 362 (373)
T PRK07324 316 --DMPSEDFCLKLLKETGVLLVPGNRFD-----------------------------LEGHVRIGYCC--DTETLKKGLK 362 (373)
T ss_pred --CCCHHHHHHHHHHhcCEEEECccccC-----------------------------CCCeEEEEecC--CHHHHHHHHH
Confidence 13466788887777899999987664 24799999973 6788888888
Q ss_pred HHHHHHHh
Q 043646 515 ALEFIAAY 522 (625)
Q Consensus 515 aL~~~~~~ 522 (625)
.|++++++
T Consensus 363 rl~~~l~~ 370 (373)
T PRK07324 363 KLSEFLRE 370 (373)
T ss_pred HHHHHHHh
Confidence 88887653
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-22 Score=214.22 Aligned_cols=333 Identities=15% Similarity=0.066 Sum_probs=218.6
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+++.+.+++.+.+... .. .|....+...+.+.+.+++.+.+|. +++ ++++| +|+++++..++.++
T Consensus 45 ~~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~-~g~~~a~~~~~~~~------ 111 (393)
T PRK05764 45 TPEHIKEAAIEALDDG----KT-KYTPAAGIPELREAIAAKLKRDNGLDYDPS-QVIVT-TGAKQALYNAFMAL------ 111 (393)
T ss_pred CCHHHHHHHHHHHhcC----CC-CcCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEe-CCcHHHHHHHHHHh------
Confidence 3567888877766421 11 1211222344444555555444453 444 79998 78888898888776
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+++||. |+++.+.|..+...++..|++++.++.+. +..+|++++++++. +++++|++++++|
T Consensus 112 ---------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~p~N 175 (393)
T PRK05764 112 ---------LDPGDE--VIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT-----PKTKALILNSPSN 175 (393)
T ss_pred ---------cCCCCE--EEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC-----ccceEEEEECCCC
Confidence 467885 99999999998888888899999999874 34789999999886 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCC--CCCCCcEEEEcCCCCCCCCC-CceEEEEecc
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSR--NIDGYDAIFLATHKFLGGPG-TPGILLISKA 314 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~--~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~ 314 (625)
|||.+.+ +++|+++|++||+++++|++++.... ...+... ...+.++++.|++|.++.|+ .+|+++.+++
T Consensus 176 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~ 255 (393)
T PRK05764 176 PTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKE 255 (393)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHH
Confidence 9999976 77899999999999999999763221 0111111 11245788889999998564 3799998877
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+. +.+.... .....+++.+.+. ++..++.......+...++....++++.+.
T Consensus 256 ~~--~~~~~~~------------------------~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 307 (393)
T PRK05764 256 LI--KAMSKLQ------------------------SHSTSNPTSIAQY--AAVAALNGPQDEVEEMRQAFEERRDLMVDG 307 (393)
T ss_pred HH--HHHHHHH------------------------hhcccCCChHHHH--HHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 62 2211100 0011122223221 112222101112345566666678888899
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|.+++++.+..+. ++.+.+...+... ...+.+..++.+.|.+++||.+++|..|..
T Consensus 308 L~~~~g~~~~~~~----g~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~----------- 363 (393)
T PRK05764 308 LNEIPGLECPKPE----GAFYVFPNVSKLL---------GKSITDSLEFAEALLEEAGVAVVPGIAFGA----------- 363 (393)
T ss_pred HhhCCCCcccCCC----cceEEEEeccccc---------ccccCCHHHHHHHHHHhCCEEEccccccCC-----------
Confidence 9888888876552 3444444433210 001123467888776778999998876641
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||+++. ++++++.++++|.+++.+
T Consensus 364 ------------------~~~vRis~~~--~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 364 ------------------PGYVRLSYAT--SLEDLEEGLERIERFLES 391 (393)
T ss_pred ------------------CCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 3899999973 799999999999988764
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=213.99 Aligned_cols=325 Identities=13% Similarity=0.037 Sum_probs=217.1
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
...++|+.+... .+|+.+.+++.+.. ..+ .|.. . ...++|++|++++|++++ +|++| +|+++++.
T Consensus 52 ~~~i~l~~n~~p~~~~~~v~~a~~~~~-----~~~--~Yp~-~----~~~~lr~~ia~~~~~~~~-~I~~t-~Ga~~~i~ 117 (380)
T PLN03026 52 EDIVKLDANENPYGPPPEVLEALGNMK-----FPY--VYPD-P----ESRRLRAALAEDSGLESE-NILVG-CGADELID 117 (380)
T ss_pred cceEEccCCCCCCCCCHHHHHHHHhhH-----hhc--cCCC-C----CHHHHHHHHHHHhCcChh-hEEEc-CCHHHHHH
Confidence 467888877543 45566888775421 111 0110 0 134699999999999876 89887 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||+ |+++.+.|+.+...++..|++++.++.+.++.+|+++|++++.. +++
T Consensus 118 ~~~~~~---------------~~~gd~--Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~----~~~ 176 (380)
T PLN03026 118 LLMRCV---------------LDPGDK--IIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVET----HKP 176 (380)
T ss_pred HHHHHh---------------cCCCCE--EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhc----cCC
Confidence 988876 578885 88888888877767778899999999877778999999998842 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc-CCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEe
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN-LRSRNIDGYDAIFLATHKFLGGPG-TPGILLIS 312 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id-~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~ 312 (625)
++|++++|+||||.+.+.+++.++++.. +++++|+++.--...-. ........-.+++.|++|.+|.|+ .+|+++.+
T Consensus 177 ~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~ 255 (380)
T PLN03026 177 KLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFP 255 (380)
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecC
Confidence 9999999999999999999999999865 99999999642110000 000101123477789999998454 48999988
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
+++. +.+.... .....+.... .++.+.+ .+..-.+..+++.++.++++.
T Consensus 256 ~~~i--~~l~~~~---------------------------~~~~~~~~~q-~aa~~aL-~~~~~~~~~~~~~~~~r~~l~ 304 (380)
T PLN03026 256 LSII--EYLWRAK---------------------------QPYNVSVAAE-VAACAAL-SNPKYLEDVKNALVEERERLF 304 (380)
T ss_pred HHHH--HHHHHhc---------------------------CCCCCCHHHH-HHHHHHh-hCHHHHHHHHHHHHHHHHHHH
Confidence 7762 2211000 0011121111 1122222 121224455666777788888
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|++++++.+. +. .+.+.+...+. .++..++.+.|. ++||.++.+....
T Consensus 305 ~~L~~~~~~~~~-p~----~~~f~~~~~~~--------------~~~~~~~~~~l~-~~gI~v~~~~~~~---------- 354 (380)
T PLN03026 305 GLLKEVPFLEPY-PS----DANFILCRVTS--------------GRDAKKLKEDLA-KMGVMVRHYNSKE---------- 354 (380)
T ss_pred HHHHHCCCCeEC-CC----CCeEEEEECCC--------------CCCHHHHHHHHH-HCCeEEEECCCCC----------
Confidence 999887656553 22 24444443331 134567888886 5799998653211
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++|||++ +.+++++++++|+.+
T Consensus 355 -------------------~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 355 -------------------LKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred -------------------CCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 2479999998 789999999999864
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-22 Score=219.68 Aligned_cols=341 Identities=13% Similarity=0.020 Sum_probs=216.1
Q ss_pred CceEeccCCCC----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh------CCCCCCcEEEe
Q 043646 76 RRLTYADHTAS----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL------GGGQADAIIFC 145 (625)
Q Consensus 76 ~~~~Yld~~~~----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~------g~~~~~~vift 145 (625)
+.++.|+.+.. .+.|+.+.+++.+.+..... |....+.. ++|+.|++++ +.+++ +|++|
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~------Y~~~~G~~----~lReaia~~~~~~~~~~~~~~-~I~it 214 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEG------YSDSKGLF----SARKAIMQYAQLKGLPNVDVD-DIYTG 214 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCC------CCCCcChH----HHHHHHHHHHHhcCCCCCChh-HEEEe
Confidence 45677776444 34578888888877642211 22222233 4555555555 45555 89887
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRS 223 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~ 223 (625)
+|++++|..++.++ +++||+ |+++.+.|+.+...++..|++++.+++++ ++.+|+++|++
T Consensus 215 -~G~~eal~~~~~~l---------------~~~Gd~--Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~ 276 (517)
T PRK13355 215 -NGVSELINLSMSAL---------------LDDGDE--VLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRS 276 (517)
T ss_pred -CcHHHHHHHHHHHh---------------CCCCCE--EEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHH
Confidence 89999999998887 578986 99999999999888888999999999875 35799999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC----CCccccCCCCCCCCCcEEEEcC
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVKINLRSRNIDGYDAIFLAT 296 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~----g~~~id~~~~~~~~~D~v~~S~ 296 (625)
+++ ++++++++++|+||||.+.+ +++|+++|++||+++++|+++.- +.....+..+..+..-+++.|+
T Consensus 277 ~~~-----~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~ 351 (517)
T PRK13355 277 KIT-----SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGL 351 (517)
T ss_pred hcC-----cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecc
Confidence 887 68999999999999999988 78899999999999999999652 1111111111111111334689
Q ss_pred CCCCCCCC-CceEEEEe--ccccc--cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHH
Q 043646 297 HKFLGGPG-TPGILLIS--KALYQ--LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWV 371 (625)
Q Consensus 297 hK~lggp~-g~G~l~v~--~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~ 371 (625)
+|.++.|+ .+|+++++ +++.. ...+.. ......+.+.+.+. ++...+
T Consensus 352 SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~~~q~--a~~~aL- 403 (517)
T PRK13355 352 SKSHMIAGYRIGWMILSGNKRIAKDYIEGLNM-------------------------LANMRLCSNVPAQS--IVQTAL- 403 (517)
T ss_pred hhhccCcccceEEEEeeCchhhHHHHHHHHHH-------------------------HhcCcCCcChHHHH--HHHHHh-
Confidence 99987554 38999965 32200 000000 00001111122221 111111
Q ss_pred HhhcCHH-HH--HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC-ChHHHHHHh
Q 043646 372 KEYIGYE-VI--KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL-HGPFVATLF 447 (625)
Q Consensus 372 ~~~~g~~-~i--~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~L 447 (625)
......+ .+ ..+..+.++++.+.|.++|++++..|. ++.+.|.-.+.. ..++ +..+++..+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p~----g~fy~~~~l~~~-----------~~~~~~~~~~~~~l 468 (517)
T PRK13355 404 GGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVKPK----AAFYIFPKIDVK-----------KFNIHDDEQFALDL 468 (517)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCC----eeeEEEeecCcc-----------cCCCCCHHHHHHHH
Confidence 1111111 11 122334478888999888888877663 345444333210 0011 233455554
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.||.+++|..|+.+ .++++||++. .++++++..++.|.+++..
T Consensus 469 l~~~gV~v~pg~~F~~~---------------------------~~~~~Ris~~--~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 469 LHDKKVLIVQGTGFNWD---------------------------KPDHFRVVYL--PRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred HHhCCEEEeCcchhCCC---------------------------CcCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 46689999999877421 2589999995 6889999999999988754
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=211.13 Aligned_cols=324 Identities=16% Similarity=0.115 Sum_probs=213.1
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.++.+.+++.+........+. ..+..++.+.+.+++.+.+|.+ ++++|++| +|++.++..++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit-~Gs~~ai~~~~~~~------ 80 (350)
T TIGR03537 14 TPPFIRKALIDAVPEVSQYPS------ALGTKALREAISGWFERRFGVKLDPDAQVLPS-AGSKEAIFHFPLVF------ 80 (350)
T ss_pred CCHHHHHHHHHHHhccCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEc-CChHHHHHHHHHHH------
Confidence 356777777765432211111 1123455666666666666753 43379988 89999999988877
Q ss_pred hhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-C-CCCCHHHHHHHHHHhhhCCCCeEEEEeccc
Q 043646 167 IMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-N-GLLDIEALRSQLELYKAAKRPMLGSFSACS 243 (625)
Q Consensus 167 ~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~ 243 (625)
+++|| ...|+++.+.|+.+...++..|++++.++++. + ..+|++++++++. ++++++++++++
T Consensus 81 ---------~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~~~i~i~~p~ 146 (350)
T TIGR03537 81 ---------IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL-----EETKIVWINYPH 146 (350)
T ss_pred ---------cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh-----hccEEEEEeCCC
Confidence 35652 12499999999999989999999999999974 3 3589999999887 478999999999
Q ss_pred CccccccC---HHHHHHHHHHcCCEEEEeccCcCCC---ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEecccc
Q 043646 244 NVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY---VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALY 316 (625)
Q Consensus 244 n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~---~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~ 316 (625)
||||.+.+ +++|+++|++||+++++|++++... ....+..... .-.+++.|++|.+|.|+ .+|+++.++.+.
T Consensus 147 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~ 225 (350)
T TIGR03537 147 NPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGI-ENVLAFHSLSKRSGMTGYRSGFVAGDEKLI 225 (350)
T ss_pred CCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCc-CCEEEEeecccccCCccccceeeecCHHHH
Confidence 99999988 7889999999999999999976321 1112222111 12366779999998664 379988776652
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
..+... ...+..++++..+.+. ...+. .....+.++.+.+...+.+.+.|.
T Consensus 226 --~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~l~-~~~~~~~~r~~l~~~~~~~~~~l~ 276 (350)
T TIGR03537 226 --SFLRKL------------------------RANFGVASPDFVQAAA--KAAWS-DDNHVLERRKIFKRKRDLFIEFFN 276 (350)
T ss_pred --HHHHHH------------------------HHhhccCCCHHHHHHH--HHHhC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 1111122333322211 12221 222234556677777888888887
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
+. ++++..+ .++.+.+...+. .++..++++.|.+ +||.+++|..|+..
T Consensus 277 ~~-g~~~~~~----~g~~~~~~~~~~--------------~~~~~~l~~~L~~-~gv~v~~g~~f~~~------------ 324 (350)
T TIGR03537 277 KV-GLEYLYP----DATFYLWVKVPS--------------GIDAKDYALRLLE-NGIVVAPGENFGSG------------ 324 (350)
T ss_pred HC-CCcccCC----CeEEEEEEECCC--------------CCCHHHHHHHHHH-CCEEEcCchhhCCC------------
Confidence 76 6665544 234444444432 1345688888866 79999998766411
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
.++++||++. .++++++..++.|++
T Consensus 325 ---------------~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 325 ---------------EEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred ---------------CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 2488999985 578999998888764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=214.49 Aligned_cols=321 Identities=13% Similarity=0.124 Sum_probs=204.6
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+.+++.+.+++..... + +. .+.++ ....++++.+++++|.+. ++++++|+.+++ .++.++
T Consensus 16 ~~~~~~~~~a~~~~~~----~-~~-~~~~~----~~~~~l~~~la~~~~~~~---~~~~~~Gs~a~~-~~l~~~------ 75 (353)
T PLN02721 16 TKPTDAMRAAMANAEV----D-DD-VLGYD----PTALRLEEEMAKIFGKEA---ALFVPSGTMGNL-ISVLVH------ 75 (353)
T ss_pred cCCCHHHHHHHHhccC----C-Cc-ccCCC----HHHHHHHHHHHHHhCCce---eEEecCccHHHH-HHHHHH------
Confidence 3456778888754311 1 11 11111 225779999999999853 456657887765 333333
Q ss_pred hhhhhhhhccC-CCCceEEEEcCCCCchhHH---HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh--CCCCeEEEEe
Q 043646 167 IMRDKLITSLR-DEERWVVFLGPYEHHSNLL---SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA--AKRPMLGSFS 240 (625)
Q Consensus 167 ~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~--~~~~~lv~~~ 240 (625)
.. +||+ |+++.++|.+... .....|++++.++.++++.+|++++++++++... .+++++|+++
T Consensus 76 ---------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~ 144 (353)
T PLN02721 76 ---------CDVRGSE--VILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLE 144 (353)
T ss_pred ---------ccCCCCe--EEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEe
Confidence 24 7885 9999999877665 3456799999999888888999999999973110 1368999997
Q ss_pred cc-cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 241 AC-SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 241 ~~-~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
++ +|+||.+.| +++|.++|+++|+++++|+|+..+.. ..+.... ..++|++++++||++++|.| ++++.++
T Consensus 145 ~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~l~~~~G-~~~~~~~ 222 (353)
T PLN02721 145 NTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL-VKAADSVSVCLSKGLGAPVG-SVIVGSK 222 (353)
T ss_pred ccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHH-hhhCCEEEEecccccCCcee-eEEecCH
Confidence 75 577899877 68999999999999999999765431 1111111 12689999999999997764 4566666
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
++. ..+.+... ...+++...+. ..+++..+ +. ..+.+ ++...+++++.
T Consensus 223 ~~~--~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l--~~-~~~~~-~~~~~~~~~l~ 271 (353)
T PLN02721 223 SFI--RKAKRLRK-------------------------TLGGGMRQVGVLAAAALVAL--QE-NVPKL-EDDHKKAKLLA 271 (353)
T ss_pred HHH--HhHHHHHH-------------------------hcCCCeehhHHHHHHHHHHH--HH-HHHHH-HHHHHHHHHHH
Confidence 652 22111100 00111111111 11111111 11 12222 23355678899
Q ss_pred HhhCCCCcEEE-eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 393 GRILPNQNIQV-LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 393 ~~L~~l~gv~v-~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
+.|.+++++++ +.+. ..+++.+.+... .+.+...+++.|. ++||.++++.
T Consensus 272 ~~L~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~~~~~L~-~~gi~v~~~~------------ 322 (353)
T PLN02721 272 EGLNQIKGLRVNVAAV---ETNIVYFDITDG-------------SRITAEKLCKSLE-EHGVLLMPGN------------ 322 (353)
T ss_pred HHHHhCCCcEEecCCc---cceEEEEEccCC-------------ccccHHHHHHHHH-hCCcEEecCC------------
Confidence 99988888865 3332 234444433221 1124568999996 5899998651
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++++|++++++++++|+++++++|++++.
T Consensus 323 ---------------------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 323 ---------------------SSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred ---------------------CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999998764
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=214.72 Aligned_cols=330 Identities=12% Similarity=0.044 Sum_probs=219.3
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
+..+.+++.+.+.... . .|....+..++.+.+.+++.+.+|.. ++++|++| +|+++++..++.++
T Consensus 35 ~~~~~~~~~~~~~~~~----~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~l------- 101 (378)
T PRK07682 35 PWNVREASIRSLEQGY----T-SYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVT-VGASQALDVAMRAI------- 101 (378)
T ss_pred CHHHHHHHHHHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CChHHHHHHHHHHh-------
Confidence 4556777766553210 0 11112234556666666666665653 33379998 78889999888877
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
+++||+ |+++.+.|+.+...++..|++++.++++. ++.+|+++|++++. ++++++++++|+||
T Consensus 102 --------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~~~~p~NP 166 (378)
T PRK07682 102 --------INPGDE--VLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT-----AKTKAILLCSPNNP 166 (378)
T ss_pred --------CCCCCE--EEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC-----cccEEEEEECCCCC
Confidence 578886 88999999988877888899999998863 46799999999887 57899999999999
Q ss_pred cccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccc
Q 043646 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK---INLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQ 317 (625)
Q Consensus 246 TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~ 317 (625)
||.+.+ +++|+++|++|++++++|++++..... ..+..+ ......+++.|++|.|+.|+ .+|++++++++.
T Consensus 167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i- 245 (378)
T PRK07682 167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFS- 245 (378)
T ss_pred cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHH-
Confidence 999976 788999999999999999996633211 111111 01133577889999998554 489999988773
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
+.+.... .....+++.+.+ .++.+++.......+.++++.++.++++.+.|++
T Consensus 246 -~~l~~~~------------------------~~~~~~~~~~~q--~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 298 (378)
T PRK07682 246 -EAMLKIH------------------------QYSMMCAPTMAQ--FAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE 298 (378)
T ss_pred -HHHHHHH------------------------HhhccCCCHHHH--HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221100 000112233322 2223333111122456667777788889999988
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
+ ++++..+. ++.+.|...+. .+++..++++.|.+++||.+++|..|+..
T Consensus 299 ~-~~~~~~p~----g~~~~~~~~~~-------------~~~~~~~~~~~ll~~~gv~v~pg~~f~~~------------- 347 (378)
T PRK07682 299 I-GLTCHVPG----GAFYAFPSISS-------------TGLSSEEFAEQLLLEEKVAVVPGSVFGES------------- 347 (378)
T ss_pred C-CCccCCCC----eeEEEEEeccC-------------CCCCHHHHHHHHHHhCCEEEcCchhhCcC-------------
Confidence 7 67665542 34444443321 12346678888766689999998766411
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|||++. ++++++..++.|+++++.
T Consensus 348 --------------~~~~iRis~~~--~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 348 --------------GEGFIRCSYAT--SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred --------------CCCeEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 24899999984 689999999999987754
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=217.02 Aligned_cols=330 Identities=17% Similarity=0.123 Sum_probs=216.2
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.|.+++.+.+..+..+.+ .+...........++++.+++++|.+ + .++|+ +|++++...+..+..
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~l~~~la~~~g~~-~-~~~~~-sG~~an~~ai~~l~~-------- 128 (407)
T PRK09064 62 HPKVIEAMIEALDRCGAGAG--GTRNISGTNHYHVELERELADLHGKE-A-ALVFT-SGYVSNDATLSTLAK-------- 128 (407)
T ss_pred CHHHHHHHHHHHHHcCCCCC--CcCcCccCHHHHHHHHHHHHHHhCCC-c-EEEEC-cHHHHHHHHHHHHhC--------
Confidence 45799999888765422222 11122223567788999999999953 3 56665 888775554433321
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~ 249 (625)
..+++ +|+...+.|.+...+++..|+++..++. .|+++|++.++.. ..+++++|++++++|++|.+
T Consensus 129 ------~~~~~--~i~~~~~~h~s~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-~~~~~~~v~~~~v~s~~G~~ 194 (407)
T PRK09064 129 ------LIPDC--VIFSDELNHASMIEGIRRSRCEKHIFRH-----NDVAHLEELLAAA-DPDRPKLIAFESVYSMDGDI 194 (407)
T ss_pred ------CCCCC--EEEEeCcchHHHHHHHHHcCCcEEEECC-----CCHHHHHHHHHhc-cCCCCeEEEEeCCCCCCccc
Confidence 23444 4677778899888888888888776664 3788999888631 11468999999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCc-cc--cCCC-CC-CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYV-KI--NLRS-RN-IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~-~i--d~~~-~~-~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
.|+++|.++|++||+++++|+||+.|.. +. .+.. .+ .+.+|+++.+++|.||.++ |+++.++++.. .+...
T Consensus 195 ~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G--G~~~~~~~~~~--~l~~~ 270 (407)
T PRK09064 195 APIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG--GYIAGSAALVD--AVRSY 270 (407)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC--ceEecCHHHHH--HHHHh
Confidence 9999999999999999999999985532 11 1100 01 1256899999999998544 78888777622 11110
Q ss_pred ccCCceEEeeccccccccccccchhhhhcCCChhHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQV 403 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v 403 (625)
.. ...+..+.++.. ..+.+++++. +.. +...++.+.+++++.+.|.++ ++++
T Consensus 271 ~~----------------------~~~~t~~~~~~~~~aa~~al~~~--~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~ 323 (407)
T PRK09064 271 AP----------------------GFIFTTSLPPAIAAAALASIRHL--KES--NEERERHQERAAKLKAALDAA-GIPV 323 (407)
T ss_pred Cc----------------------cccccCcCCHHHHHHHHHHHHHH--hcC--HHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence 00 000112233322 2233455554 222 334567788899999999876 6666
Q ss_pred eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHH
Q 043646 404 LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSA 483 (625)
Q Consensus 404 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~ 483 (625)
+.+ ..+++.+.+... ....++.+.|.+++||.+++....+.+.
T Consensus 324 ~~~----~~~iv~i~~~~~---------------~~~~~l~~~L~~~~gi~v~~~~~p~~~~------------------ 366 (407)
T PRK09064 324 MPN----ESHIVPVMVGDP---------------EKCKKASDMLLEEHGIYVQPINYPTVPR------------------ 366 (407)
T ss_pred CCC----CCCEEEEEeCCH---------------HHHHHHHHHHHHhCCEEEeeECCCCCCC------------------
Confidence 543 245555544211 1245788887666799998644322110
Q ss_pred HHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 484 IQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 484 ~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+++||+++.++|++|+++++++|++++.+
T Consensus 367 --------~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 367 --------GTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred --------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367999999999999999999999998764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=216.91 Aligned_cols=334 Identities=15% Similarity=0.089 Sum_probs=217.3
Q ss_pred EeccCCCC---Cc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 79 TYADHTAS---GR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~---~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
-|+|.++. +. +++.|.+++.+.+..+. .... .+..........++++++++++++. ++.++++ +|+.+++.
T Consensus 40 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~~~--~~~i~~~-~g~~~~~~ 114 (385)
T PRK05958 40 RMLNFASNDYLGLARHPRLIAAAQQAARRYG-AGSG-GSRLVTGNSPAHEALEEELAEWFGA--ERALLFS-SGYAANLA 114 (385)
T ss_pred eEEEeeCCCcccCCCCHHHHHHHHHHHHhcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCC--CcEEEEC-cHHHHHHH
Confidence 35555543 33 56789999988885432 1111 1111122345678899999999984 2245554 77776654
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
++..+ +++||. |++++++|+++...+...|++++.++. .|+++++++++.. .+.+
T Consensus 115 -~l~~~---------------~~~gd~--V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~--~~~~ 169 (385)
T PRK05958 115 -VLTAL---------------AGKGDL--IVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKW--RAGR 169 (385)
T ss_pred -HHHHh---------------CCCCCE--EEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhc--cCCC
Confidence 43443 478885 999999999999888888999988875 3889999988731 1246
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc---C---CCCCCCCCcEEEEcCCCCCCCCCCceE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN---L---RSRNIDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id---~---~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
+++++.++.|+||.+.|+++|+++|++||+++|+|++|+.+..... . ........++++.|+||+|+. .| |+
T Consensus 170 ~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-g~ 247 (385)
T PRK05958 170 ALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SG-AA 247 (385)
T ss_pred eEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CC-cE
Confidence 7888888999999999999999999999999999999976543211 0 011111334778899999974 44 78
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++.++++.+ .+.... . ...+..+.+++. ..+.+++++. +.. +.+.++...+
T Consensus 248 ~~~~~~~~~--~~~~~~---~-------------------~~~~~~~~~~~~~aa~~aal~~~--~~~--~~~~~~~~~~ 299 (385)
T PRK05958 248 VLGSETLID--YLINRA---R-------------------PFIFTTALPPAQAAAARAALRIL--RRE--PERRERLAAL 299 (385)
T ss_pred EEcCHHHHH--HHHHhC---c-------------------cceecCCCCHHHHHHHHHHHHHH--hcC--HHHHHHHHHH
Confidence 877766521 110000 0 000111222222 1223444443 221 5677888888
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|+++ ++++..+ .++++.|.+... .+..++.+.|.+ +||.++++..+..+.
T Consensus 300 ~~~l~~~L~~~-~~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~l~~-~gI~v~~~~~~~~~~-- 356 (385)
T PRK05958 300 IARLRAGLRAL-GFQLMDS----QSAIQPLIVGDN---------------ERALALAAALQE-QGFWVGAIRPPTVPA-- 356 (385)
T ss_pred HHHHHHHHHHc-CCCcCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCceEecccCCCCCC--
Confidence 99999999876 5665433 345666654211 124578888865 699998643221110
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++||+++.+++++|+++++++|+++
T Consensus 357 ------------------------~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 357 ------------------------GTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred ------------------------CCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 1368999999999999999999999875
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=215.76 Aligned_cols=338 Identities=11% Similarity=0.072 Sum_probs=214.8
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~ 154 (625)
.+.|+.+... +.|..+.+++.+.+.. +....|....+..++.+++.+++.+.+|. ++++.|++| +|++++|.
T Consensus 37 ~i~l~~g~p~~~~p~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt-~G~~~al~ 111 (394)
T PRK05942 37 LIDLGMGNPDGAAPQPVIEAAIAALAD----PQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPL-LGSKEGLT 111 (394)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHhC----CCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEc-cChHHHHH
Confidence 4455543322 2455677776665531 11111221222345556666666665564 343247777 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++ +++||+ |+++.++|+.+...+...|++++.++++.+ +.+|++++++++. +
T Consensus 112 ~~~~~~---------------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~ 169 (394)
T PRK05942 112 HLALAY---------------VNPGDV--VLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA-----Q 169 (394)
T ss_pred HHHHHh---------------CCCCCE--EEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc-----c
Confidence 998877 578986 999999999988778888999999998753 4699999999886 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (625)
+++++++++|+||||.+.+ +++|+++|+++|+++|+|++++... ....+.... .....+++.|++|.||.|+
T Consensus 170 ~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~G 249 (394)
T PRK05942 170 QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAG 249 (394)
T ss_pred cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChh
Confidence 8999999999999999988 7788999999999999999965221 111221110 0123466789999997554
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~ 382 (625)
.+|++++++++. +.+.... .....+.+.+.+.+ .+++.. .....+.+++
T Consensus 250 lRiG~i~~~~~l~--~~l~~~~------------------------~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~ 300 (394)
T PRK05942 250 WRVGFVVGNRHII--QGLRTLK------------------------TNLDYGIFSALQKAAETALQL---PDSYLQQVQE 300 (394)
T ss_pred hheeeeecCHHHH--HHHHHHH------------------------hhcccCCCHHHHHHHHHHHhC---cHHHHHHHHH
Confidence 489999888772 2221100 00011222332221 222221 1123456677
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.++.++++.+.|.+. ++.+..+ .++.+.|...+. +++..+++..+++++||.+++|..|.
T Consensus 301 ~~~~~~~~~~~~L~~~-~~~~~~~----~~~~f~~~~~~~--------------~~~~~~~~~~~l~~~gV~v~~g~~f~ 361 (394)
T PRK05942 301 RYRTRRDFLIQGLGEL-GWNIPPT----KATMYLWVPCPV--------------GMGSTDFALNVLQKTGVVVTPGNAFG 361 (394)
T ss_pred HHHHHHHHHHHHHHHC-CCeecCC----CeeeEEEEECCC--------------CCCHHHHHHHHHHHCCEEEeCChhhC
Confidence 7777788888888776 6766544 345555544432 13355676666566899999887553
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.. .++++||+++ .+.+.+.++|+.+...
T Consensus 362 ~~---------------------------~~~~iRis~~-----~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 362 EG---------------------------GEGYVRISLI-----ADCDRLGEALDRLKQA 389 (394)
T ss_pred cC---------------------------CCCeEEEEec-----CCHHHHHHHHHHHHHh
Confidence 10 2489999996 2356667777666543
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-22 Score=213.71 Aligned_cols=345 Identities=14% Similarity=0.038 Sum_probs=223.9
Q ss_pred CceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC----C--CCCCcEEE
Q 043646 76 RRLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG----G--GQADAIIF 144 (625)
Q Consensus 76 ~~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g----~--~~~~~vif 144 (625)
++++.|..+.. .+.|+.+.+++.+.+..-..+ .|....+ ..++|+.++++++ . +++ +|++
T Consensus 52 ~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~----~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~-~v~i 122 (430)
T PLN00145 52 RPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYN----SYSTCVG----LLPARRAIAEYLSRDLPYELSTD-DIYL 122 (430)
T ss_pred CCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCC----CCCCCcc----CHHHHHHHHHHHhhccCCCCChh-hEEE
Confidence 46788887643 456788999998877431111 1111112 2345555555553 2 344 7999
Q ss_pred eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHH
Q 043646 145 CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALR 222 (625)
Q Consensus 145 t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~ 222 (625)
| +|++++|..++.++ +++||+ |+++.+.|+.+.......|++++.+++.+ ++.+|+++|+
T Consensus 123 t-~G~~~al~l~~~~l---------------~~~Gd~--Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 184 (430)
T PLN00145 123 T-AGCAQAIEIIMSVL---------------AQPGAN--ILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVE 184 (430)
T ss_pred e-CCHHHHHHHHHHHh---------------cCCCCE--EEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHH
Confidence 8 89999999998887 478886 99999999988777778899999998753 4679999999
Q ss_pred HHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEc
Q 043646 223 SQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLA 295 (625)
Q Consensus 223 ~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S 295 (625)
++++ ++++++++++|+||||.+.+ +++|+++|+++|+++|+|++++.-. ....+..+.....-+++.|
T Consensus 185 ~~~~-----~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S 259 (430)
T PLN00145 185 ALAD-----ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGS 259 (430)
T ss_pred HHhC-----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEec
Confidence 9887 57999999999999999988 7788899999999999999965311 1122211111122366679
Q ss_pred CCCCCCCCC-CceEEEEec--cccccCCCCCcccCCceEEeeccccccccccccchhhhhc--CCChhHHHHHHHHHHHH
Q 043646 296 THKFLGGPG-TPGILLISK--ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN--GGTPQIVQMIRAALAFW 370 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v~~--~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~~aal~~~ 370 (625)
++|.++.|+ .+|++++.. .+. .... .. ..+..... .+++.+.+ .++..+
T Consensus 260 ~SK~~~~pG~RlG~iv~~~~~~~~--~~~~-~~--------------------~~~~~~~~~~~~~~~~~Q---~a~~~~ 313 (430)
T PLN00145 260 ISKRWVVPGWRLGWIATCDPNGIL--KETK-VV--------------------DSIRNYLNISTDPATFVQ---GAIPQI 313 (430)
T ss_pred cccccCCCCeeEEEEEEecchhhh--hhhH-HH--------------------HHHHHHhcccCCCCHHHH---HHHHHH
Confidence 999988775 489999843 221 1000 00 00000001 11222222 222222
Q ss_pred HHh--hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCccccccCCCCC-ChHHHHHH
Q 043646 371 VKE--YIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL-HGPFVATL 446 (625)
Q Consensus 371 ~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~ 446 (625)
+.+ ....+...+..+..++.+.+.|+.++++.+. .| .++.+.|.-.+.. ....+ +..+++..
T Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P----~ga~y~~v~l~~~----------~~~~~~~~~~~~~~ 379 (430)
T PLN00145 314 IANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKP----EGSMFVMVKLDLS----------CLSGIKDDMDFCCK 379 (430)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCC----CeeeEEEeccChh----------hcCCCCCHHHHHHH
Confidence 221 1224566667777788899999888887653 33 3455554433210 00011 34567766
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|+++.||.+.+|..|+ .++|+||+++ .+.++++..++.|++++...
T Consensus 380 ll~~~gV~v~pG~~fg-----------------------------~~~~lRis~~--~~~~~l~~al~rl~~~~~~~ 425 (430)
T PLN00145 380 LAKEESVVVLPGSALG-----------------------------MKNWLRITFA--IDPPSLEDGLERLKSFCLRH 425 (430)
T ss_pred HHHhCCEEEeCccccC-----------------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 7677899999998764 2489999998 37888999999888887654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=214.99 Aligned_cols=319 Identities=14% Similarity=0.073 Sum_probs=213.2
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
...+.|+.+... ++|+.+.+++.+.+......|.. -..++|+.|++++|++++ +|++| +|++++|.
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~-----------g~~~Lr~aia~~~~~~~~-~I~vt-~Gs~e~i~ 95 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSWLDHALYPDG-----------GATTLRQTIANKLHVKME-QVLCG-SGLDEVIQ 95 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCCC-----------CHHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHH
Confidence 456777766655 46678888887765322111211 134588999999999877 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||. |+++.+.|+.+...++..|++++.|+++. +.+|+++|+++++ +++
T Consensus 96 ~~~~~l---------------~~~gd~--vlv~~P~y~~~~~~~~~~g~~v~~v~~~~-~~~d~~~l~~~~~-----~~~ 152 (366)
T PRK01533 96 IISRAV---------------LKAGDN--IVTAGATFPQYRHHAIIEGCEVKEVALNN-GVYDLDEISSVVD-----NDT 152 (366)
T ss_pred HHHHHh---------------cCCCCE--EEEcCCcHHHHHHHHHHcCCEEEEeecCC-CCcCHHHHHHHhC-----cCC
Confidence 998887 578885 99999999999888889999999999864 5689999999886 578
Q ss_pred eEEEEecccCccccccCHHHHHHHHH---HcCCEEEEeccCcCCCccc---c-CCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLH---QYGGFACFDFAASGPYVKI---N-LRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~---~~g~~vivD~A~~~g~~~i---d-~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
+++++++|+||||.+.+.+++.++++ +++ ++++|+++..-...- . +.......--+++.|++|.||.|+ .+
T Consensus 153 ~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRi 231 (366)
T PRK01533 153 KIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRV 231 (366)
T ss_pred cEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHH
Confidence 99999999999999999777666655 444 678899964211000 0 011101123467789999998564 38
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
|+++.++++. +.+.... .....+.+.. .++..++ .+....+.+.+..++
T Consensus 232 G~~i~~~~~~--~~l~~~~---------------------------~~~~~~~~~q-~aa~~~l-~~~~~~~~~~~~~~~ 280 (366)
T PRK01533 232 GYAVGHEELI--EKLNVVR---------------------------LPFNVSSLAQ-KAATIAF-GDDEFIEEIVRVNTE 280 (366)
T ss_pred hHHhCCHHHH--HHHHHhc---------------------------CCCCcCHHHH-HHHHHHh-CCHHHHHHHHHHHHH
Confidence 9999887762 2221100 0111222221 1222222 222223444555566
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
.++++.+.|+.+ +++++.+. +++.+...+ +..++.+.|.+ +||.|++ |
T Consensus 281 ~r~~~~~~l~~~-g~~~~~~~-----~nf~~~~~~-----------------~~~~~~~~l~~-~GI~Vr~---~----- 328 (366)
T PRK01533 281 GLRQYESFCKEN-EIPFYQSQ-----TNFIFLPVE-----------------NGGEIYEACAH-AGFIIRP---F----- 328 (366)
T ss_pred HHHHHHHHHHhC-CCccCCCc-----CcEEEEeCC-----------------CHHHHHHHHHH-CCcEEcc---C-----
Confidence 677777777666 66665442 334333332 14578888865 8999994 2
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++++||+++ +.+|+++|+++|+++++.-
T Consensus 329 --------------------------~~~iRis~~---~~~~~~~l~~al~~~~~~~ 356 (366)
T PRK01533 329 --------------------------PNGVRITVG---TREQNEGVISVLQQHFENK 356 (366)
T ss_pred --------------------------CCceEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence 267999998 8999999999999887553
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=209.66 Aligned_cols=322 Identities=18% Similarity=0.162 Sum_probs=231.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhh
Q 043646 91 RYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRD 170 (625)
Q Consensus 91 ~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (625)
+.+++++.+.+..+....+ .+..-.++.....++++.||+++|.+. .++|+ +|-.+++..+....
T Consensus 56 ~~~~~a~~~~~~~~g~g~~--gsR~i~G~~~~h~~LE~~lA~f~g~e~--al~f~-SGy~AN~~~i~~l~---------- 120 (388)
T COG0156 56 PELIEAAKAAIRRYGVGAG--GSRLISGTSDLHVELEEELADFLGAEA--ALLFS-SGFVANLGLLSALL---------- 120 (388)
T ss_pred HHHHHHHHHHHHHhCCCCC--CcCcccCCcHHHHHHHHHHHHHhCCCc--EEEEc-ccchhHHHHHHHhc----------
Confidence 3477777777765422222 222334567888999999999999974 58886 89999887775543
Q ss_pred hhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccc
Q 043646 171 KLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIY 249 (625)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~ 249 (625)
+++| +|+....+|.|++.+++..+++++.++. .|+++|++.|.+....+ +.++|++..+.++.|.+
T Consensus 121 ------~~~d--li~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdi 187 (388)
T COG0156 121 ------KKGD--LIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDI 187 (388)
T ss_pred ------CCCc--EEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCc
Confidence 4566 6999999999999999999999999886 48999999998632212 57899999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCC----C--CCCCcEEEEcCCCCCCCCCCceEEEEeccccc-c-CCC
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR----N--IDGYDAIFLATHKFLGGPGTPGILLISKALYQ-L-GSS 321 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~----~--~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~-l-~~~ 321 (625)
.|+++|++++++||++++||+||++|....+-+.. + ...+|+++.++.|.||+-+ |++..+..+.. + ...
T Consensus 188 ApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G--g~v~g~~~~~d~L~~~a 265 (388)
T COG0156 188 APLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG--GYIAGSAALIDYLRNRA 265 (388)
T ss_pred CCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC--ceeeCcHHHHHHHHHhC
Confidence 99999999999999999999999998765332211 1 1245899999999998544 77777777632 1 111
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
+|+. |..+.|+. .+...++++.+. . ....+++.+.+..+++..+... +
T Consensus 266 r~~i--------------------------fStalpP~~aaa~~~al~~l~---~-~~~~r~~L~~~~~~~~~~~~~~-~ 314 (388)
T COG0156 266 RPFI--------------------------FSTALPPAVAAAALAALRILE---E-GPERRERLQELAAFFRSLLKAL-G 314 (388)
T ss_pred Ccee--------------------------ccCCCCHHHHHHHHHHHHHHH---h-CHHHHHHHHHHHHHHHHHHHhc-C
Confidence 2221 12223333 333455565552 1 2355677777888888666543 4
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHH
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~ 480 (625)
+.+... ..+|+.+.+.+.. ....+...|.++ ||.+.+...+++|.+
T Consensus 315 ~~~~~s----~s~I~pv~~gd~~---------------~a~~~s~~l~~~-Gi~v~~i~~PTVp~g-------------- 360 (388)
T COG0156 315 LVLLPS----ESPIIPVILGDEE---------------RALEASRALLEE-GIYVSAIRPPTVPKG-------------- 360 (388)
T ss_pred CccCCC----CCCeeeeEeCCHH---------------HHHHHHHHHHHC-CeeEeeecCCCCCCC--------------
Confidence 444222 4588887776532 145678888776 999999888876643
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+|+++...+|++||+++++++.++
T Consensus 361 ------------tarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 361 ------------TARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ------------cceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 367999999999999999999999865
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=213.17 Aligned_cols=324 Identities=16% Similarity=0.052 Sum_probs=217.3
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
...++|+.+.... +++.+.+++.+.+... .. .|.. . ...++|++++++++++++ +|++| +|++++|.
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~---~~--~y~~----~-~~~~lr~aia~~~~~~~~-~I~it-~G~~~al~ 91 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDD---LR--LYPD----P-NADALRQAIAAYYGLDPE-QVFVG-NGSDEVLA 91 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhh---hh--cCCC----C-cHHHHHHHHHHHhCCCHH-HEEEc-CCHHHHHH
Confidence 3568888777654 4678888887765321 00 1110 0 125799999999998876 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||+ |+++.+.|+.+....+..|++++.++.++++.+|+++|++ .+
T Consensus 92 ~~~~~l---------------~~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---------~~ 145 (353)
T PRK05387 92 HAFLAF---------------FNHDRP--LLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR---------PN 145 (353)
T ss_pred HHHHHh---------------cCCCCE--EEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh---------cC
Confidence 998887 578886 9999999877766667789999999998778899998752 35
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHc-CCEEEEeccCcCC--CccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGP--YVKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILL 310 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~-g~~vivD~A~~~g--~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~ 310 (625)
+++++++|+||||.+.+.+++.++++.+ ++++|+|++++.- .....+. ....-.+++.|++|.+|.|+ .+|+++
T Consensus 146 ~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~GlR~G~~~ 223 (353)
T PRK05387 146 GGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLI--DRYPNLLVVQTFSKSRSLAGLRVGFAI 223 (353)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHH--hhCCCEEEEEehhHhhcchhhhceeee
Confidence 7889999999999999999999999876 9999999996421 1111111 11133588889999997554 489999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
.++++. ..+.... ......+.+..... ++...+ .+....++.+++.++.+++
T Consensus 224 ~~~~~~--~~l~~~~------------------------~~~~~~~~~~~~q~-~~~~~l-~~~~~~~~~~~~~~~~~~~ 275 (353)
T PRK05387 224 GHPELI--EALNRVK------------------------NSFNSYPLDRLAQA-GAIAAI-EDEAYFEETRAKVIATRER 275 (353)
T ss_pred cCHHHH--HHHHHhh------------------------ccCCCCCcCHHHHH-HHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence 887762 2221100 00001122222211 111222 1222245666777778888
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|.++ ++++..+ .+.+.|...++ .+..++++.|. ++||.++. |..+ .
T Consensus 276 l~~~L~~~-g~~~~~~-----~~~~~~~~~~~---------------~~~~~~~~~l~-~~gi~v~~---~~~~--~--- 325 (353)
T PRK05387 276 LVEELEAL-GFEVLPS-----KANFVFARHPS---------------HDAAELAAKLR-ERGIIVRH---FNKP--R--- 325 (353)
T ss_pred HHHHHHHC-CCeECCC-----cCcEEEEECCC---------------CCHHHHHHHHH-HCCEEEEE---CCCC--C---
Confidence 99999887 6765432 13333333321 24568888885 47999973 2211 0
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +.+++++++++|++++.
T Consensus 326 ---------------------~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 326 ---------------------IDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred ---------------------CCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 2489999997 77999999999998754
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=213.53 Aligned_cols=323 Identities=16% Similarity=0.097 Sum_probs=215.4
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.++.+.+++.+.+..+ +.... .+...........++++.++++++.+ + .++++ +|+++++. ++.++
T Consensus 31 ~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~-~G~~~~~~-~l~~~-------- 96 (360)
T TIGR00858 31 SHPEVIQAAQQGAEQY-GAGST-ASRLVSGNSPLHEELEEELAEWKGTE-A-ALLFS-SGYLANVG-VISAL-------- 96 (360)
T ss_pred CCHHHHHHHHHHHHhc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCCC-C-EEEEC-chHHHHHH-HHHHh--------
Confidence 5578999998888542 22211 11111223456778999999999853 3 56676 78877665 34444
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||. |++..++|+++...++..|++++.++. +|+++|++.++.. ..++++++++++++|+||.
T Consensus 97 -------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~-~~~~~~~v~~~~~~~~~G~ 161 (360)
T TIGR00858 97 -------VGKGDL--ILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKN-RGERRKLIVTDGVFSMDGD 161 (360)
T ss_pred -------CCCCCE--EEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHc-ccCCCeEEEEeCCccCCCC
Confidence 467885 889999999999888889999988873 5899999988742 0125789999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEeccCcCCCcccc------CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCC
Q 043646 249 YSDTRSIARLLHQYGGFACFDFAASGPYVKIN------LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSP 322 (625)
Q Consensus 249 ~~~l~~I~~la~~~g~~vivD~A~~~g~~~id------~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~ 322 (625)
+.|+++|.++|+++|+++|+|++++.+....+ ......++.|+++.|++|+|++ .| |+++.++++.+ .+.
T Consensus 162 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G~~~~~~~~~~--~~~ 237 (360)
T TIGR00858 162 IAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-AYVAGSQALID--YLI 237 (360)
T ss_pred CcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cC-cEEEcCHHHHH--HHH
Confidence 99999999999999999999999986543322 1111113668999999999985 44 88888777621 111
Q ss_pred CcccCCceEEeeccccccccccccchhhhhcCCChhHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 323 PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ-MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
+... ...+..++++... ...+++++. +. .+.+.++.+++++++.+.|.++ ++
T Consensus 238 ~~~~----------------------~~~~~~~~~~~~~~a~~~al~~~--~~--~~~~~~~~~~~~~~l~~~L~~~-~~ 290 (360)
T TIGR00858 238 NRAR----------------------TLIFSTALPPAVAAAALAALELI--QE--EPWRREKLLALIARLRAGLEAL-GF 290 (360)
T ss_pred HhCc----------------------cceecCCCCHHHHHHHHHHHHHH--hh--CHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 1000 0001112222221 223444433 21 2466788888999999999886 56
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 402 QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 402 ~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
++..+ .++++.+..... .+..++.+.|.+ +||.++++..+..+.
T Consensus 291 ~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~l~~-~gI~v~~~~~~~~~~---------------- 334 (360)
T TIGR00858 291 TLMPS----CTPIVPVIIGDN---------------ASALALAEELQQ-QGIFVGAIRPPTVPA---------------- 334 (360)
T ss_pred ccCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCeeEeeeCCCCCCC----------------
Confidence 65432 344555444211 124578888855 799998654332110
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.++++||+++.+++++|+++++++|+
T Consensus 335 ----------~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 335 ----------GTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred ----------CCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 13689999999999999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=211.53 Aligned_cols=333 Identities=14% Similarity=0.064 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
...++++.+++++|++ .++++ +|+++++..++.+++ +++||+ |+++..+|.++...+...
T Consensus 34 ~~~~le~~la~~~g~~---~~v~~-~sgt~al~lal~al~--------------~~~Gd~--Viv~~~~~~~~~~~~~~~ 93 (379)
T PRK11658 34 KNQALEQAFCQLTGNQ---HAIAV-SSATAGMHITLMALG--------------IGPGDE--VITPSLTWVSTLNMIVLL 93 (379)
T ss_pred hHHHHHHHHHHHhCCC---eEEEE-CCHHHHHHHHHHHcC--------------CCCCCE--EEECCCcHHHHHHHHHHc
Confidence 3678999999999985 45666 456677888887774 578886 999999999998888889
Q ss_pred CCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 202 LAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 202 G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
|++++.++++.+ +.+|+++++++++ +++++|+ +.|++|...|+++|.++|+++|+++++|+||+.|....+
T Consensus 94 G~~~v~vd~~~~~~~~d~~~l~~~i~-----~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~ 165 (379)
T PRK11658 94 GATPVMVDVDRDTLMVTPEAIEAAIT-----PRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKG 165 (379)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHhcc-----cCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECC
Confidence 999999999864 4689999999997 5789887 445689999999999999999999999999998865442
Q ss_pred --CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 281 --LRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 281 --~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
+... +.++++++.+|.+.++.| |+++.+ +++ ...+++...+|...+....+..... .....+..|+.
T Consensus 166 ~~~g~~---g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~--~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~G~n 235 (379)
T PRK11658 166 RHIGAR---GTAIFSFHAIKNITCAEG-GLVVTDDDEL--ADRLRSLKFHGLGVDAFDRQTQGRA----PQAEVLTPGYK 235 (379)
T ss_pred eecCCC---CCEEEeCCCCCcCcccCc-eEEEECCHHH--HHHHHHHHHcCCCcchhhhhcccCC----Ccceeeccccc
Confidence 3332 667888888999876554 666665 344 2233333322222111000000000 00011233442
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc--eEEEEeccCCCCCCccccccCC
Q 043646 358 QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA--ILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~--i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
.-..-+.+|+.+. +..+.+.+.++.+.+++++.+.|++++...+..+....+.. .+.+.+... .
T Consensus 236 ~~~~~l~AAl~~~--ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 301 (379)
T PRK11658 236 YNLADINAAIALV--QLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEE------------R 301 (379)
T ss_pred cCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCc------------c
Confidence 2122334555555 33467888899999999999999988654343332111112 223333211 1
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh-----cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL-----AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
.+++..++.+.|.+ .||.++..+.+. +.+.+. ..+-+.++++ ....+.+.++...|++|++
T Consensus 302 ~~~~r~~~~~~L~~-~gI~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~-----------~~~~l~lP~~~~l~~~~~~ 367 (379)
T PRK11658 302 CGISRDALMEALKE-RGIGTGLHFRAA--HTQKYYRERFPTLSLPNTEWN-----------SERICSLPLFPDMTDADVD 367 (379)
T ss_pred ccCCHHHHHHHHHH-CCCCCcccCcCc--ccChhhhccCCCCCChHHHHH-----------HhCeEEccCCCCCCHHHHH
Confidence 23457789999954 799876433211 111110 0111222222 2477899999999999999
Q ss_pred HHHHHHHHHH
Q 043646 511 FILAALEFIA 520 (625)
Q Consensus 511 ~ll~aL~~~~ 520 (625)
+++++|++++
T Consensus 368 ~i~~~i~~~~ 377 (379)
T PRK11658 368 RVITALQQIA 377 (379)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=210.87 Aligned_cols=345 Identities=10% Similarity=0.036 Sum_probs=222.5
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG---QADAIIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~---~~~~vift~sGttaal 153 (625)
.+.|..+... .+++.+.+++.+.+... ....|.. .+...+.+.+.+++.+..|.. ++++|++| +|++++|
T Consensus 46 ~i~L~~g~p~~~~~~~~~~~l~~~~~~~----~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it-~Gs~~al 119 (410)
T PRK06290 46 LIDMGVGEPDEMADESVVEVLCEEAKKP----ENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHS-IGSKPAL 119 (410)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEc-cCHHHHH
Confidence 4555544333 24556777776654211 1111111 223455566666666555643 43368888 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||. |+++.+.|+.+...++..|++++.++++.+ ..+|++++++++.
T Consensus 120 ~~~~~~~---------------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~----- 177 (410)
T PRK06290 120 AMLPSCF---------------INPGDV--TLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK----- 177 (410)
T ss_pred HHHHHHh---------------CCCCCE--EEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc-----
Confidence 9998887 578885 999999999888888889999999999853 4679999998886
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCC-CCCCcEEEEcCCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRN-IDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (625)
+++++|++++|+||||.+.+ +++|.++|++||+++++|++++.... +..+.... ....++++.|++|.+|.|+
T Consensus 178 ~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G 257 (410)
T PRK06290 178 EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG 257 (410)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCch
Confidence 57999999999999999988 46788889999999999999663211 11221111 1134688889999997665
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|+++.++.+. ..+.... .....+++...+. ++..++ .+..-.+.+.++
T Consensus 258 lRiG~ii~~~~l~--~~l~~~~------------------------~~~~~~~~~~~q~--aa~~~l-~~~~~~~~~~~~ 308 (410)
T PRK06290 258 WRLAFVVGNELIV--KAFATVK------------------------DNNDSGQFIAIQK--AGIYAL-DHPEITEKIREK 308 (410)
T ss_pred hheEeEEeCHHHH--HHHHHHH------------------------hccccCCcHHHHH--HHHHHh-hCcHHHHHHHHH
Confidence 389999887762 1111000 0011122222221 222222 121124456666
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+..++++.+.|.++ ++.+..+ .++.+.|...++.... +....+..++++.|+++.+|.+.+|..|
T Consensus 309 ~~~~~~~l~~~L~~~-g~~~~~p----~g~f~l~v~lp~~~~~-------~~~~~~~~~~~~~Ll~~~~v~~~p~~~~-- 374 (410)
T PRK06290 309 YSRRLDKLVKILNEV-GFKAEMP----GGTFYLYVKAPKGTKS-------GIKFENAEEFSQYLIKEKLISTVPWDDA-- 374 (410)
T ss_pred HHHHHHHHHHHHHhC-CCeecCC----CeeeEEEEECCCcccc-------CCCCCCHHHHHHHHHHhCCEEEECCccc--
Confidence 777788888999886 6776654 3455555444421000 0001246688898988666776665432
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHh
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP-YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||+++ .-.++++.++++++|++.+..
T Consensus 375 -----------------------------~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 375 -----------------------------GHFLRFSVTFEAKDEEEEDRILEEIKRRLSD 405 (410)
T ss_pred -----------------------------cCeEEEEEEcccccccchhHHHHHHHHHHhh
Confidence 278999995 556899999999999988765
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=211.67 Aligned_cols=354 Identities=17% Similarity=0.163 Sum_probs=227.2
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHH-HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQR-MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~-~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
...++.|.+++...+...| +.|+.- |+.|.. ..++...+.++.+++||++.. +|-.- ||+.+++..+...+.-.
T Consensus 59 N~~s~~v~~a~~s~l~nkyaeg~pg~r-yy~g~~~~d~ie~l~~~ra~~lf~a~~a-nvqp~-Sg~~An~~v~~all~~~ 135 (493)
T PRK13580 59 NYSSLAVQLAMGNLLTDKYAEGTPGHR-FYAGCQNVDTVEWEAAEHAKELFGAEHA-YVQPH-SGADANLVAFWAILAHK 135 (493)
T ss_pred ccCCHHHHHHhcccccccCcCCCCCcc-ccCCCchHHHHHHHHHHHHHHHhCCCcc-cccCC-CcHHHHHHHHHHHhccc
Confidence 3456688888877775544 344443 333333 455667788999999999876 56555 78988777666554210
Q ss_pred --cc-----c---------hhhhhhhhccCCCCceEEEEcCCCCchhH-----HHHHHcCCeEEEEecCC-CCCCCHHHH
Q 043646 164 --VP-----S---------IMRDKLITSLRDEERWVVFLGPYEHHSNL-----LSWRQSLAEVVEIGLDD-NGLLDIEAL 221 (625)
Q Consensus 164 --~~-----~---------~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-----~~~~~~G~~vv~v~~~~-~~~ld~~~L 221 (625)
.| + ..++.+.+.+ .||+ |+..+..|...+ ..+.....+++..+++. ++.+|++++
T Consensus 136 ~~~p~~~~~g~~~~~~~~~~~~~~~~~~~-~gd~--i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l 212 (493)
T PRK13580 136 VESPALEKLGAKTVNDLTEEDWEALRAEL-GNQR--LLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEI 212 (493)
T ss_pred ccCcchhccccccccccchhhhhhhhccC-CCCE--EEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHH
Confidence 00 0 0000000000 1454 555444332221 11111234667777775 689999999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCC---CCCCCCcEEEEcCCC
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRS---RNIDGYDAIFLATHK 298 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~---~~~~~~D~v~~S~hK 298 (625)
++.+. +++++|++++.+|.++ ..|+++|.++|+++|+++++|+||++|.+..+... ....++|++++|+||
T Consensus 213 ~~~~~-----~~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hK 286 (493)
T PRK13580 213 AALAR-----EFKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHK 286 (493)
T ss_pred HHHHh-----hcCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChh
Confidence 99998 4678888889999955 77999999999999999999999999998766522 112478999999999
Q ss_pred CCCCCCCceEEEEeccccc-cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 299 FLGGPGTPGILLISKALYQ-LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 299 ~lggp~g~G~l~v~~~~~~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
+|+||.| |++++++++.. ++...|.. .|++....++++++++........
T Consensus 287 aL~GP~G-G~I~~~~~l~~~L~~a~P~i----------------------------~gg~l~p~iAA~avAl~e~~~~ef 337 (493)
T PRK13580 287 TLRGPRG-GLVLAKKEYADAVDKGCPLV----------------------------LGGPLPHVMAAKAVALAEARTPEF 337 (493)
T ss_pred hccCCCe-EEEEecHHHHHHHhhCCCcc----------------------------cCCCccHHHHHHHHHHHHHhCccH
Confidence 9988997 99999988632 11112222 234333333333444332122234
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
...+++...+++++.+.|.+. |+.++... ...+++.+.+.+. ......+.+.| .+.||.+..
T Consensus 338 ~~y~~~l~~Na~~La~~L~~~-G~~vv~gg--TdshIV~V~lg~~--------------~~~g~~a~~~L-~e~GI~vn~ 399 (493)
T PRK13580 338 QKYAQQVVDNARALAEGFLKR-GARLVTGG--TDNHLVLIDVTSF--------------GLTGRQAESAL-LDAGIVTNR 399 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCccCCC--CCCCEEEEEeCCH--------------HHHHHHHHHHH-HHCCeEEcc
Confidence 567888999999999999886 77776421 1347777666432 11233566677 457999976
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~ 522 (625)
-..++.|.+.. .+..|||++... ++++|++++++.|.+++..
T Consensus 400 i~~Ptvp~g~~-----------------------~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 400 NSIPSDPNGAW-----------------------YTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred ccCCCCCCCCC-----------------------CCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 55554332210 146799999874 4699999999999988764
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=212.79 Aligned_cols=322 Identities=15% Similarity=0.072 Sum_probs=216.6
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.++.+.+++.+.+... .... ..+....+..++.+++++++++++|.+ . .++++ +|+++++ .++.++
T Consensus 48 ~~~~~~~a~~~~~~~~-~~~~-~~~~~~~g~~~l~~~l~~~l~~~~g~~-~-~i~~~-sG~~a~~-~a~~~~-------- 113 (385)
T TIGR01825 48 DHPRLKEAAAQAIQQY-GVGA-GAVRTIAGTLRLHEELEEKLAKFKKTE-A-ALVFQ-SGFNTNQ-GVLSAL-------- 113 (385)
T ss_pred CCHHHHHHHHHHHHHc-CCCC-CccCcccCCcHHHHHHHHHHHHHhCCC-c-EEEEC-cHHHHHH-HHHHHh--------
Confidence 6678888888877532 1111 111122234678889999999999964 3 57776 7877765 444444
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||. |++..++|+++...+...|++++.++ .+|++++++.+.+. ..+++++|++++++|+||.
T Consensus 114 -------~~~gd~--vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~-~~~~~~~v~~~~v~~~tG~ 178 (385)
T TIGR01825 114 -------LRKGDI--VLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLREN-PSYGKKLIVTDGVFSMDGD 178 (385)
T ss_pred -------CCCCCE--EEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhh-ccCCCeEEEEecCCcCCCC
Confidence 468884 88899999999888888888877664 46889999888742 1136899999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEeccCcCCCcc---------ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC
Q 043646 249 YSDTRSIARLLHQYGGFACFDFAASGPYVK---------INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG 319 (625)
Q Consensus 249 ~~~l~~I~~la~~~g~~vivD~A~~~g~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~ 319 (625)
+.|+++|.++|++||+++++|++++.+... +++. .+.|+++.|++|+|++++ |+++.++++. +
T Consensus 179 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~s~sK~~~~~g--G~~~~~~~~~--~ 250 (385)
T TIGR01825 179 VAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE----DKVDIQVGTLSKAIGVVG--GYAAGHKELI--E 250 (385)
T ss_pred ccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC----cCCcEEEEeccHHhhcCC--CEEecCHHHH--H
Confidence 999999999999999999999998765432 1222 267899999999997554 7888777662 2
Q ss_pred CCCCcccCCceEEeeccccccccccccchhhhhcCC---ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG---TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g---t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
.+.... ..+..+ .+.....+.++++.+. . ...+.++...+++++.+.|.
T Consensus 251 ~~~~~~------------------------~~~~~~~~~~~~~~~a~~~al~~~~--~--~~~~~~~~~~~~~~l~~~L~ 302 (385)
T TIGR01825 251 YLKNRA------------------------RPFLFSTAQPPAVVAALAAAVDELQ--R--SPELMERLWDNTRFFKAGLG 302 (385)
T ss_pred HHHHhC------------------------ccccccCCCCHHHHHHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHH
Confidence 211000 001111 1222222334444431 1 12456666778889999998
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
++ ++++..+. .+++.+..... .+..++++.|.++ ||.++++.++..+.
T Consensus 303 ~~-g~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~L~~~-gi~v~~~~~~~~~~----------- 350 (385)
T TIGR01825 303 KL-GYDTGGSE----TPITPVVIGDE---------------KAAQEFSRRLFDE-GIFAQSIVFPTVPR----------- 350 (385)
T ss_pred Hc-CCCCCCCC----CCEEEEEECCH---------------HHHHHHHHHHHHC-CcEEcccCCCCCCC-----------
Confidence 76 67766542 34554443211 1245788888775 99987544332110
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+++|++++++++++|+++++++|++++++
T Consensus 351 ---------------~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 351 ---------------GTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred ---------------CCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999998754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=210.23 Aligned_cols=320 Identities=15% Similarity=0.100 Sum_probs=213.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
++.+.|+.+... .+|+.+.+++.+.+......|.. .-..++|+++++++|++++ +|++| +|++++|.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~aia~~~~~~~~-~I~it-~Ga~~al~ 89 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPST----------EDERRARAAVAARHGRTPD-EVLLL-AGAAEGFA 89 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCc----------cchHHHHHHHHHHhCcChh-hEEEC-CCHHHHHH
Confidence 456777766553 46778899888766432222221 1245688999999999876 89998 89999998
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++. + .+++ +++..+.+......++..|++++.++++.++.+|++++ . +++
T Consensus 90 ~~~~-l----------------~~~~---viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l----~-----~~~ 140 (349)
T PRK07908 90 LLAR-L----------------RPRR---AAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV----P-----DDA 140 (349)
T ss_pred HHHh-c----------------CCCe---EEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHh----c-----cCC
Confidence 8876 4 3443 55566777777777788899999999987677888744 3 468
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC--CCccccCCCCCCCCCc-EEEEcCCCCCCCCC-CceEEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG--PYVKINLRSRNIDGYD-AIFLATHKFLGGPG-TPGILL 310 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~--g~~~id~~~~~~~~~D-~v~~S~hK~lggp~-g~G~l~ 310 (625)
+++++++++||||.+.+.++|.++|+ ++.++|+|++++- ......+... +..+ +++.|++|.++.|+ .+|+++
T Consensus 141 ~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~ 217 (349)
T PRK07908 141 DLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPGEPESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYAL 217 (349)
T ss_pred CEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccCCccccccc--cCCCEEEEeecccccCCccceeeeee
Confidence 89999999999999999999999996 4788999999752 1122233222 1123 45559999987443 379999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY--IGYEVIKKQEDVYI 388 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~--~g~~~i~~~~~~l~ 388 (625)
+++++. +.+.+.... +..+++ . .+++..++... ...+.++++.+..+
T Consensus 218 ~~~~~~--~~~~~~~~~------------------------~~~~~~---~--~~a~~~~~~~~~~~~~~~~~~~~~~~r 266 (349)
T PRK07908 218 GAPDVL--ARLTRGRAH------------------------WPVGTL---Q--LEAIAACCAPRAVAEAAADAARLAADR 266 (349)
T ss_pred cCHHHH--HHHHhcCCC------------------------CCccHH---H--HHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 987762 222111100 011111 1 11122221110 11345677778888
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++ ++++..+. .+.+.+...++ ..++.+.| +++||.+++|..|..
T Consensus 267 ~~l~~~L~~~-~~~~~~p~----~g~~~~~~~~~-----------------~~~~~~~l-~~~gI~v~~g~~f~~----- 318 (349)
T PRK07908 267 AEMVAGLRAV-GARVVDPA----AAPFVLVRVPD-----------------AELLRKRL-RERGIAVRRGDTFPG----- 318 (349)
T ss_pred HHHHHHHHhC-CcEeccCC----CceEEEEECCc-----------------HHHHHHHH-HhCCEEEEECCCCCC-----
Confidence 8899999887 78877653 24444444331 34677777 558999998876531
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++++|||++ +++|+++++++|+.++..+
T Consensus 319 ----------------------~~~~~vRis~~---~~~~~~~l~~al~~~~~~~ 348 (349)
T PRK07908 319 ----------------------LDPDYLRLAVR---PRAEVPVLVQALAEILKAG 348 (349)
T ss_pred ----------------------CCCCeEEEEeC---CCccHHHHHHHHHHHHhcc
Confidence 02589999996 7899999999999887543
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=211.45 Aligned_cols=347 Identities=12% Similarity=-0.019 Sum_probs=217.6
Q ss_pred ceEeccCCCCC----cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHH
Q 043646 77 RLTYADHTASG----RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTT 150 (625)
Q Consensus 77 ~~~Yld~~~~~----~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGtt 150 (625)
+++.|..+..+ ++++.+.+++.+.+... .. .|....+..++.+.+.+++.+.+| .+++ +|++| +|++
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~it-~G~~ 103 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG----HN-YYGPSEGLPELREAIVKREKRKNGVDITPD-DVRVT-AAVT 103 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC----CC-CCCCCCCcHHHHHHHHHHHHHhcCCCCChh-hEEEe-CCHH
Confidence 45566555432 46778888887766421 00 111112233444444444444445 4454 89998 7899
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEE-ecCCC-CCCCHHHHHHHHHHh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEI-GLDDN-GLLDIEALRSQLELY 228 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v-~~~~~-~~ld~~~L~~~l~~~ 228 (625)
+++..++.++ +++||. |+++.++|..+...++..|++++.+ +.+++ +.+|++.|++++.
T Consensus 104 ~al~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~-- 164 (398)
T PRK08363 104 EALQLIFGAL---------------LDPGDE--ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT-- 164 (398)
T ss_pred HHHHHHHHHh---------------CCCCCE--EEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCC--
Confidence 9999988877 578885 9999999999988888889988888 55543 4689999998886
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCCCCCCCcEEEEcCCCCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK---INLRSRNIDGYDAIFLATHKFLGG 302 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~~~~~~D~v~~S~hK~lgg 302 (625)
++++++++++++||||.+.+ +++|+++|+++|+++++|++++.-... ..+..+....--+++.|++|+++.
T Consensus 165 ---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 241 (398)
T PRK08363 165 ---EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFA 241 (398)
T ss_pred ---cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCC
Confidence 57899999999999999987 788999999999999999996532111 111111111113556799999876
Q ss_pred CC-CceEEEE--eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 303 PG-TPGILLI--SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 303 p~-g~G~l~v--~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|+ ++|++++ ++.+. ..+..... . ......+...+.+.+ +..++.......+.
T Consensus 242 ~GlRiG~~~~~~~~~~~--~~l~~~~~--------------------~-~~~~~~~~s~~~q~~--~~~~l~~~~~~l~~ 296 (398)
T PRK08363 242 TGWRLGYIYFVDPEGKL--AEVREAID--------------------K-LARIRLCPNTPAQFA--AIAGLTGPMDYLEE 296 (398)
T ss_pred ccceEEEEEEeCcHHHH--HHHHHHHH--------------------H-HhcccccCChHHHHH--HHHHHhCChHHHHH
Confidence 65 5899998 44331 11100000 0 000011222222211 11121101122345
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
.+++.+..++++.+.|.+++++++..+ .++.+.|...++. ...+..+++..+++++||.+++|.
T Consensus 297 ~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~~~~~~l~~~------------~~~~~~~~~~~~l~~~gV~v~~g~ 360 (398)
T PRK08363 297 YMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPRIEEG------------PWKDDKEFVLDVLHEAHVLFVHGS 360 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEecCC----CeEEEEEEEeccC------------CCCCHHHHHHHHHHhCCEEEeCch
Confidence 566677778888899988888876554 3455655444321 001234555454466899999987
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|+.. .++++||+++ .++++++..++.|++++.+
T Consensus 361 ~f~~~---------------------------~~~~iRis~~--~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 361 GFGEY---------------------------GAGHFRLVFL--PPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred hhCCC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 66411 2489999996 4689999999999887654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=209.37 Aligned_cols=329 Identities=13% Similarity=0.054 Sum_probs=216.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
...+.|+.+..+ ++|+.+.+++.+.+......+.. ...++|+.|+++++++++ +|++| +|++++|.
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~-~I~it-~G~~~~l~ 98 (369)
T PRK08153 32 PFRARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPE-NIMVG-EGIDGLLG 98 (369)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHH-HEEEc-CCHHHHHH
Confidence 344577766544 45678888887765321111110 135689999999998776 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||. |++..+.|+.+...+...|++++.+|.+.+ .+|++++.+.+.. +++
T Consensus 99 ~~~~~~---------------~~~gd~--vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~~----~~~ 156 (369)
T PRK08153 99 LIVRLY---------------VEPGDP--VVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-REDLDALLDAARR----ENA 156 (369)
T ss_pred HHHHHh---------------cCCCCE--EEECCCcchHHHHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhcc----cCC
Confidence 998876 478885 999999999988778888999999998665 4788888777653 578
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
+++++++|+||||.+.+.+++.++++.. |+++++|++++.-.. ...+... ..-.+++.|++|.+|.|+ .+|+
T Consensus 157 ~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~GlRiG~ 234 (369)
T PRK08153 157 PLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTD--DPNVIRMRTFSKAYGLAGARVGY 234 (369)
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhc--CCCEEEEecchHhccCcchheee
Confidence 9999999999999999998888877654 899999999652111 1111111 112366779999998565 3899
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
++.++++. +.+.... ...+.+.+.+. ++..++ .+..-.+.+.+..+..+
T Consensus 235 ~v~~~~~~--~~l~~~~--------------------------~~~~~s~~~q~--~~~~~l-~~~~~~~~~~~~~~~~r 283 (369)
T PRK08153 235 AIGAPGTI--KAFDKVR--------------------------NHFGMNRIAQA--AALAAL-KDQAYLAEVVGKIAAAR 283 (369)
T ss_pred eecCHHHH--HHHHHhh--------------------------cCCCCCHHHHH--HHHHHh-cCHHHHHHHHHHHHHHH
Confidence 99987762 1111000 00111122211 112222 22222445566667777
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee-cCCCCCchhhH
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR-GGCACAGPYGH 467 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~-~G~~~~~~~~~ 467 (625)
+++.+.|+.. ++.++ +. .+.+.+...+.. ......+.+.|.+ +||.++ +|...
T Consensus 284 ~~~~~~L~~~-g~~~~-p~----~~~f~~~~~~~~-------------~~~a~~l~~~l~~-~Gi~v~~p~~~~------ 337 (369)
T PRK08153 284 DRIAAIARAN-GLTPL-PS----ATNFVAIDCGRD-------------GAFARAVLDGLIA-RDIFVRMPGVAP------ 337 (369)
T ss_pred HHHHHHHHHC-CCccC-CC----cCcEEEEECCCC-------------cccHHHHHHHHHH-CCeEEeeCCCCC------
Confidence 7888888765 55533 21 233433332211 1225577777754 799996 33210
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
.++++||+++ +++|+++++++|++++...++
T Consensus 338 ------------------------~~~~iRis~~---~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 338 ------------------------LDRCIRVSCG---PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred ------------------------CCCeEEEecC---CHHHHHHHHHHHHHHHHHhhc
Confidence 1479999998 799999999999998876543
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=226.52 Aligned_cols=371 Identities=16% Similarity=0.121 Sum_probs=248.8
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHH
Q 043646 43 HHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTK 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~ 121 (625)
..+|...+..+.++++++.---.. -...|++.+..... |+.|.+.+.+.- .+|..-+.-.-..+++..+
T Consensus 52 l~lp~~~sE~e~~~~~~~la~~N~---------~~~~~ig~G~y~~~~P~vi~~~i~~~~-~~~t~ytPyQ~EisQG~Le 121 (954)
T PRK05367 52 LDLPAALSEAEALAELRAIASKNK---------VFRSYIGQGYYGTHTPPVILRNILENP-AWYTAYTPYQPEISQGRLE 121 (954)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC---------CCCcccCCCCCCCcCcHHHHHHHHhCc-chhhccCCCChHHHHHHHH
Confidence 455666666777777776542210 01235555444433 333445554421 1222111111224667778
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ- 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~- 200 (625)
...+.+..+++++|.+.. ++.++ .++|++...++.++. +.++.+..|+++...|+++...|+.
T Consensus 122 al~~~Qt~la~LtG~~~a-naSl~-d~aTAa~ea~~~a~~--------------~~~~~~~~vlv~~~~hP~~~~v~~t~ 185 (954)
T PRK05367 122 ALLNFQTMVADLTGLEIA-NASLL-DEATAAAEAMALAKR--------------VSKSKSNRFFVDDDVHPQTLDVLRTR 185 (954)
T ss_pred HHHHHHHHHHHHHCCChh-hcccc-ccHHHHHHHHHHhhh--------------hccCCCCEEEEcCccCHHHHHHHHHH
Confidence 889999999999999987 67887 578887777776653 3443112499999999999987754
Q ss_pred ---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 201 ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 201 ---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
.|++|+.++.+.+ ++ . +++.. ++.+..|.+|.+.|+++|+++||++|+++++|+.+.....
T Consensus 186 a~~~G~ev~~~~~~~d--~~--------~-----~~~~~-vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~ 249 (954)
T PRK05367 186 AEPLGIEVVVGDAAKA--LD--------H-----DDVFG-VLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTL 249 (954)
T ss_pred HHhCCCEEEEecCccC--CC--------c-----ccEEE-EEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccC
Confidence 5999999987542 11 1 24444 4566678999999999999999999999999997644444
Q ss_pred cccCCCCCCCCCcEEEEcCCCC-----CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 278 KINLRSRNIDGYDAIFLATHKF-----LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
..+..++ |+|+++++.||| ||||+ .|++++++++ .+.+++...|+.. +....-......+..+...|+
T Consensus 250 l~~pge~---GaDi~vgs~qkfg~P~g~GGP~-aGflavr~~~--~r~lpgrivG~s~-d~~g~~~~~lalqtReqhiRr 322 (954)
T PRK05367 250 LTPPGEM---GADIAVGSAQRFGVPMGFGGPH-AAYFAVRDAY--KRSMPGRIVGVSV-DAAGNPALRLALQTREQHIRR 322 (954)
T ss_pred CCChhhc---CCCEEEeeCcccCCCCCCCCCC-EEEEEECHHH--HhhCCCCeeeeec-ccCCCcccccccccccccccc
Confidence 4456666 999999999999 78884 8999999988 5567777666532 110000001112233445678
Q ss_pred cCCChhHHHH--HHHHHHH---HHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 353 NGGTPQIVQM--IRAALAF---WVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 353 ~~gt~~~~~~--~~aal~~---~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
+.+|.|++.. +.+.++. ......|.++|.++.+.++.++.++|.. .|+++..+. ...++++.+ +
T Consensus 323 ekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~---~f~~~~~~~-~------ 391 (954)
T PRK05367 323 EKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHDS---FFDTLTVEV-G------ 391 (954)
T ss_pred cccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCC---CCCeEEEeC-C------
Confidence 8999887642 1121211 2235679999999999999999999977 588876542 335555553 1
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
.+..++.+.|.+ +||.++.- .++.+|||++.++|++
T Consensus 392 ----------~~~~~i~~~l~~-~gi~~~~~---------------------------------~~~~l~is~~e~~t~~ 427 (954)
T PRK05367 392 ----------GDAAAVLARALA-AGINLRRV---------------------------------DDDHVGISLDETTTRE 427 (954)
T ss_pred ----------CCHHHHHHHHHH-CCceeccc---------------------------------cCCEEEEEecccCCHH
Confidence 135689999965 69988521 1367999999999999
Q ss_pred HHHHHHHHHH
Q 043646 508 EFEFILAALE 517 (625)
Q Consensus 508 did~ll~aL~ 517 (625)
||++++++|.
T Consensus 428 did~l~~~l~ 437 (954)
T PRK05367 428 DLAALLAVFG 437 (954)
T ss_pred HHHHHHHHHc
Confidence 9999999997
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=209.16 Aligned_cols=340 Identities=14% Similarity=0.032 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
..++++.+++++|.+. .++++ + +++++..++.+++ +++||+ |++++++|.+...++...|
T Consensus 31 ~~~le~~la~~~g~~~--~v~~~-s-gt~al~~~l~al~--------------~~~Gd~--Viv~~~~~~~~~~~~~~~G 90 (380)
T TIGR03588 31 VPAFEEALAEYVGAKY--AVAFN-S-ATSALHIACLALG--------------VGPGDR--VWTTPITFVATANCALYCG 90 (380)
T ss_pred HHHHHHHHHHHHCCCe--EEEEc-C-HHHHHHHHHHHcC--------------CCCCCE--EEeCCcchHHHHHHHHHcC
Confidence 5678999999999852 35554 4 4667888887763 578886 9999999999988888899
Q ss_pred CeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC
Q 043646 203 AEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL 281 (625)
Q Consensus 203 ~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~ 281 (625)
++++.+++++ ++.+|++++++++++. ..+++++|++++ ++|...|+++|.++|++||+++|+|++|+.|.. ++.
T Consensus 91 ~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~~t~~v~~~~---~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~ 165 (380)
T TIGR03588 91 AKVDFVDIDPDTGNIDEDALEKKLAAA-KGKLPKAIVPVD---FAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGG 165 (380)
T ss_pred CEEEEEecCCCcCCcCHHHHHHHhhcc-cCCCceEEEEeC---CCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCC
Confidence 9999999975 6789999999999731 113688887654 689999999999999999999999999999875 454
Q ss_pred CCCCC-CCCcEEEEcCC--CCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC---C
Q 043646 282 RSRNI-DGYDAIFLATH--KFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG---G 355 (625)
Q Consensus 282 ~~~~~-~~~D~v~~S~h--K~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~---g 355 (625)
+.++. ...|+.++|+| |+++.+.| |+++.+++.. .+.+++...+|....... ..........++. |
T Consensus 166 ~~~g~~~~~d~~~~S~~~~K~~~~~~G-G~v~~~~~~~-~~~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~g 237 (380)
T TIGR03588 166 KPVGNCRYADATVFSFHPVKIITTAEG-GAVTTNDEEL-AERMRLLRSHGITKDPLL------FEKQDEGPWYYEQQELG 237 (380)
T ss_pred EeCCCccccceEEEecCCCCcccccCc-eEEEECCHHH-HHHHHHHHHCCCCCCccc------ccccccCcceeeeeccc
Confidence 44411 12399999988 99976665 6666654431 122222221111100000 0000000011111 1
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
...-+.-+.+++... +....+.+.++.+++++++.+.|.+++++.++.+..........+.+.-.. .
T Consensus 238 ~n~~m~~l~aa~g~~--qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~ 304 (380)
T TIGR03588 238 FNYRMTDIQAALGLS--QLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQ-----------E 304 (380)
T ss_pred cccCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECC-----------c
Confidence 110011112222222 112257788888999999999999998877654421111122222221110 0
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCc--hhhHhhhc-CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAG--PYGHTLLA-FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l~-~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~l 512 (625)
.+.+..++.+.|. +.||.++..+.+.. |+.....+ .+-+.+..+ ....++++++...|++|++++
T Consensus 305 ~~~~r~~l~~~L~-~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~-----------~~~~l~lP~~~~l~~~dv~~i 372 (380)
T TIGR03588 305 FGCTRKEVFEALR-AAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENF-----------YLAEISLPLHPALTLEQQQRV 372 (380)
T ss_pred CCCCHHHHHHHHH-HCCCCcccCCcccccChhhhccCCcCCCcHHHHH-----------HhceEEcCCCCCCCHHHHHHH
Confidence 1245778999995 57999987654321 11111000 011112211 247899999999999999999
Q ss_pred HHHHHHHH
Q 043646 513 LAALEFIA 520 (625)
Q Consensus 513 l~aL~~~~ 520 (625)
+++|++++
T Consensus 373 ~~~l~~~~ 380 (380)
T TIGR03588 373 VETLRKVL 380 (380)
T ss_pred HHHHHHhC
Confidence 99999763
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-21 Score=207.28 Aligned_cols=338 Identities=10% Similarity=0.060 Sum_probs=213.4
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|+.+... +.++.+.+++.+.+... ....|....+..++.+++.+++.+.+|. +++++|++| +|+++++
T Consensus 33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it-~G~~~~l 107 (389)
T PRK08068 33 DVINLGQGNPDQPTPEHIVEALQEAAENP----ANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAIL-FGGKAGL 107 (389)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEc-CCcHHHH
Confidence 34555544323 34567788887766421 1111211122345555555555555564 333268887 7888888
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||. |+++.+.|+.+...++..|++++.++++. +..+|++++++++.
T Consensus 108 ~~~~~~~---------------~~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~----- 165 (389)
T PRK08068 108 VELPQCL---------------MNPGDT--ILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA----- 165 (389)
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc-----
Confidence 8887776 478885 99999999999888888999999999975 34689999998886
Q ss_pred CCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcC-CC---ccccCCCC-CCCCCcEEEEcCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASG-PY---VKINLRSR-NIDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~-g~---~~id~~~~-~~~~~D~v~~S~hK~lggp 303 (625)
.++++|++++|+||||.+.+. ++|+++|++|++++++|++++. .+ .+..+... +.....+++.|++|.||.|
T Consensus 166 ~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 166 EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA 245 (389)
T ss_pred ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc
Confidence 478999999999999999886 5778889999999999999642 11 11111111 1112347778999999866
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|+++.++++. +.+... ......++++..+. ++..++.....-.+..++
T Consensus 246 GlRiG~~~~~~~l~--~~l~~~------------------------~~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~ 297 (389)
T PRK08068 246 GWRVAFAVGNESVI--EAINLL------------------------QDHLFVSLFGAIQD--AAIEALLSDQSCVAELVA 297 (389)
T ss_pred cceeEeEecCHHHH--HHHHHH------------------------HhhccCCCChHHHH--HHHHHHhCcHHHHHHHHH
Confidence 5 489999887762 221100 01111233332222 222333211122345566
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+..++++.+.|.++ ++.+..+ .++.+.+...++ .++..++++.|.+++||.+++|..|+
T Consensus 298 ~~~~~r~~~~~~L~~~-g~~~~~~----~g~~~~~v~~~~--------------~~~~~~~~~~l~~~~gi~v~pg~~f~ 358 (389)
T PRK08068 298 RYESRRNAFISACREI-GWEVDAP----KGSFFAWMPVPK--------------GYTSEQFADLLLEKAHVAVAPGNGFG 358 (389)
T ss_pred HHHHHHHHHHHHHHHC-CCcccCC----CeeEEEEEECCC--------------CCCHHHHHHHHHHhCCEEEecchHhC
Confidence 6777788888888776 6665543 234444444332 13467888988776899999887653
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.. .++++||+++. .++.+...++.|+
T Consensus 359 ~~---------------------------~~~~iRi~~~~--~~~~l~~al~~l~ 384 (389)
T PRK08068 359 EH---------------------------GEGYVRVGLLT--DEERLREAVERIG 384 (389)
T ss_pred cc---------------------------CCCeEEEEEcC--CHHHHHHHHHHHH
Confidence 10 24799999973 4555555555544
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=210.41 Aligned_cols=350 Identities=13% Similarity=0.051 Sum_probs=221.4
Q ss_pred CCceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCC
Q 043646 75 KRRLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGA 147 (625)
Q Consensus 75 ~~~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~s 147 (625)
.+.+++|.++-. .+.|+.+.+++.+.+..- ... .|....+..++.+.+.+++.+.++ ++++ +|++| +
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~---~~~-~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~-~I~it-~ 138 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSG---KGN-SYGPGAGILPARRAVADYMNRDLPHKLTPE-DIFLT-A 138 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCC---CCC-CCCCCCChHHHHHHHHHHHHHhcCCCCCcc-cEEEe-C
Confidence 367899988743 234577888888776421 111 121222233344444444433333 4555 89998 8
Q ss_pred hHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHH
Q 043646 148 GTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQL 225 (625)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l 225 (625)
|++++|..++.++ ++|||+ |+++.+.|+.+....+..|++++.+++.+ ++.+|+++|++++
T Consensus 139 G~~~al~~~~~~l---------------~~pGd~--Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~ 201 (462)
T PLN02187 139 GCNQGIEIVFESL---------------ARPNAN--ILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIA 201 (462)
T ss_pred CHHHHHHHHHHHh---------------cCCCCE--EEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhc
Confidence 9999999999887 578986 99999999988777888899999998853 5689999999888
Q ss_pred HHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcCCC
Q 043646 226 ELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLATHK 298 (625)
Q Consensus 226 ~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~hK 298 (625)
+ ++++++++++|+||||.+.+ +++|+++|++||+++|+|++++--. ....+..+.....-+++.|++|
T Consensus 202 ~-----~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK 276 (462)
T PLN02187 202 D-----ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISK 276 (462)
T ss_pred C-----CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchh
Confidence 6 57899999999999999987 7788999999999999999965311 1112222211112356679999
Q ss_pred CCCCCC-CceEEEEec-c-ccc-cCCCCCcccCCceEEeeccccccccccccchhhhhcC--CChhHHHHHHHHHHHHHH
Q 043646 299 FLGGPG-TPGILLISK-A-LYQ-LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG--GTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 299 ~lggp~-g~G~l~v~~-~-~~~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~--gt~~~~~~~~aal~~~~~ 372 (625)
.|+.|+ .+|++++.+ + ... ...+... ...... +.+.+.+ .++..++.
T Consensus 277 ~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~~Q---~a~~~~L~ 329 (462)
T PLN02187 277 GWVVPGWKIGWIALNDPEGVFETTKVLQSI------------------------KQNLDVTPDPATIIQ---AALPAILE 329 (462)
T ss_pred hcCCccceeEEEEecCchhHHHHHHHHHHH------------------------HHhccccCCCCHHHH---HHHHHHHh
Confidence 998776 389999843 2 100 0001000 000111 1122222 22222221
Q ss_pred h--hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCccccccCCCCC-ChHHHHHHhh
Q 043646 373 E--YIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL-HGPFVATLFN 448 (625)
Q Consensus 373 ~--~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~L~ 448 (625)
+ ..-.+.+++..++.++++.+.|++++++... .| .++.+.|.-.+... ..++ +..+++..+.
T Consensus 330 ~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P----~gg~fl~~~l~~~~----------~~~~~~~~~~~~~ll 395 (462)
T PLN02187 330 KADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKP----ESCTYLLTKLELSL----------MDNIKDDIDFCVKLA 395 (462)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCC----CEeEEEEeecChhh----------CCCCCCHHHHHHHHH
Confidence 1 1224455666677788888999887654322 22 33555555332100 0011 2445655555
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
.++||.+++|..|+ .++++||+++. .++.++..++.|.++++...
T Consensus 396 ~~~gV~v~pG~~fg-----------------------------~~~~iRis~~~--~~e~l~~al~rL~~~l~~~~ 440 (462)
T PLN02187 396 REENLVFLPGDALG-----------------------------LKNWMRITIGV--EAHMLEDALERLKGFCTRHA 440 (462)
T ss_pred hhCCEEEECccccC-----------------------------CCCeEEEEeCC--CHHHHHHHHHHHHHHHHHhh
Confidence 67899999988664 14899999983 68889999999998886543
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=210.71 Aligned_cols=345 Identities=13% Similarity=0.037 Sum_probs=218.8
Q ss_pred ceEeccCCCCC-----cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--------CCCCCcEE
Q 043646 77 RLTYADHTASG-----RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--------GGQADAII 143 (625)
Q Consensus 77 ~~~Yld~~~~~-----~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--------~~~~~~vi 143 (625)
+.+-|..+... .+++.+.+++.+.+.. .....|....+..++.+.+.+++.+.++ .+++ +|+
T Consensus 34 ~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~-~i~ 108 (412)
T PTZ00433 34 SIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS----QECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD-NVV 108 (412)
T ss_pred CeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc----CCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh-hEE
Confidence 45555544432 3577888888776642 1111121111233444444444443322 3444 899
Q ss_pred EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHH
Q 043646 144 FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEAL 221 (625)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L 221 (625)
+| +|++++|..++.++ +++||+ |+++.++|+.+...++..|++++.++++. ++.+|+++|
T Consensus 109 it-~G~~~al~~~~~~~---------------~~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l 170 (412)
T PTZ00433 109 LC-SGVSHAILMALTAL---------------CDEGDN--ILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEI 170 (412)
T ss_pred Ee-CChHHHHHHHHHHh---------------cCCCCE--EEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHH
Confidence 98 89999999998887 478885 99999999999888889999999999864 458999999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEE
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFL 294 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~ 294 (625)
++++. +++++|++++++||||.+.+ +++|+++|+++|+++++|+++..-.. ...+..+.....-+++.
T Consensus 171 ~~~~~-----~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 245 (412)
T PTZ00433 171 RRLVD-----DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILG 245 (412)
T ss_pred HHHhc-----cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEc
Confidence 98887 47899999999999999876 67778999999999999999652111 01111221111235667
Q ss_pred cCCCCCCCCC-CceEEEEec------cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHH
Q 043646 295 ATHKFLGGPG-TPGILLISK------ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAAL 367 (625)
Q Consensus 295 S~hK~lggp~-g~G~l~v~~------~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal 367 (625)
|++|.||.|+ .+|++++.. ++ +..+.. ......+.+.+.+. ++.
T Consensus 246 SfSK~~~~pGlRlG~~i~~~p~~~~~~~--~~~~~~-------------------------~~~~~~~~~~~~q~--a~~ 296 (412)
T PTZ00433 246 GTAKNLVVPGWRLGWLLLVDPHGNGGDF--LDGMKR-------------------------LGMLVCGPCSVVQA--ALG 296 (412)
T ss_pred cchhhcCCCCeeEEEEEEeCCcccHHHH--HHHHHH-------------------------HhhccCCCChHHHH--HHH
Confidence 9999997675 489999731 12 111100 00001123333332 122
Q ss_pred HHHHHh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 368 AFWVKE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 368 ~~~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
.++... ..-.+.++++.+..++.+.+.|.+..++.+..+ .++.+.+...+... -....+..++++.
T Consensus 297 ~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~gg~f~~~~l~~~~---------~~~~~~~~~~~~~ 363 (412)
T PTZ00433 297 EALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMP----RGSMFLMSRLDLEK---------FRDIKSDVEFYEK 363 (412)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CeeEEEEEEechhh---------cCCCCCHHHHHHH
Confidence 222111 112445666677778888888887666665544 34555554443200 0000134578888
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+++||.+++|..|+ .++++||+++. .+++++..++.|.+++..
T Consensus 364 ll~~~gV~v~pg~~f~-----------------------------~~~~iRis~~~--~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 364 LLEEENVQVLPGEIFH-----------------------------MPGFTRLTISR--PVEVLREAVERIKAFCER 408 (412)
T ss_pred HHHhcCEEEeCccccC-----------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 8766899999987664 14899999984 578899999999888764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=208.86 Aligned_cols=334 Identities=12% Similarity=0.005 Sum_probs=217.4
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|+.+.+++.+.+... .. .|....+..++.+.+.+++.+.+|.+ ++++|++| +|++.++..++..+
T Consensus 40 ~p~~~~~~~~~~~~~~----~~-~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~~------ 107 (387)
T PRK08912 40 GPEDVRRAAADALLDG----SN-QYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVT-SGATEALAAALLAL------ 107 (387)
T ss_pred CCHHHHHHHHHHHhcC----CC-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEe-CCcHHHHHHHHHHh------
Confidence 3566777776655321 11 12222234556666666666666653 33378998 78888898887776
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
+++||+ |+++.+.|+.+...++..|++++.++++. ++.+|+++|++++. ++++++++++++||
T Consensus 108 ---------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~NP 171 (387)
T PRK08912 108 ---------VEPGDE--VVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS-----PRTKAVLLNNPLNP 171 (387)
T ss_pred ---------cCCCCE--EEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC-----ccceEEEEeCCCCC
Confidence 578885 99999999998888888999999999875 56899999999886 57899999999999
Q ss_pred cccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEecccc
Q 043646 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALY 316 (625)
Q Consensus 246 TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~ 316 (625)
||.+.+ +++|.++|++||+++|+|++++... ....+... +....++++.|++|.||.|+ .+|++++++++.
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~ 251 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLL 251 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHH
Confidence 999987 6678999999999999999965211 11111111 11134688899999998443 389999987762
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
+.+.... .....++++..+. ++...+.....-.+.++++.+..++++.+.|.
T Consensus 252 --~~l~~~~------------------------~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 303 (387)
T PRK08912 252 --RVLAKAH------------------------QFLTFTTPPNLQA--AVAYGLGKPDDYFEGMRADLARSRDRLAAGLR 303 (387)
T ss_pred --HHHHHHH------------------------hhccccCChHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211000 0001122222221 11111111111234566777777888889998
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
.. ++++..+. ++.+.+...+.. +...+..++++.|.+++||.+.+|..|.... .
T Consensus 304 ~~-g~~~~~~~----g~~~l~~~l~~~-----------~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~-~--------- 357 (387)
T PRK08912 304 RI-GFPVLPSQ----GTYFLTVDLAPL-----------GLAEDDVAFCRRLVEEAGVAAIPVSAFYEED-P--------- 357 (387)
T ss_pred hC-CCcccCCC----cceEEEeccccc-----------CCCCCHHHHHHHHHhcCCEEEecchhhCCCC-C---------
Confidence 86 67766542 344444433320 0123456788887667899999887653110 0
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++. .+++++..++.|++++.
T Consensus 358 ---------------~~~~iRl~~~~--~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 358 ---------------VTSVVRFCFAK--RDATLDEAVERLAAARR 385 (387)
T ss_pred ---------------CCCEEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 24899999985 57888888888887654
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-22 Score=210.97 Aligned_cols=340 Identities=10% Similarity=-0.006 Sum_probs=220.3
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~ 154 (625)
.+.|+.+... ++++.+.+++.+.+.. ... .|....+..++.+.+++++++++|.+ ++++|++| +|+++++.
T Consensus 31 ~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it-~g~~~al~ 104 (384)
T PRK12414 31 ALNLSQGAPNFAPDPALVEGVARAMRD----GHN-QYAPMAGIAALREALAEKTERLYGARYDPASEVTVI-ASASEGLY 104 (384)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHHh----CCC-CcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEE-CChHHHHH
Confidence 4555554333 3467788887765532 111 12222335677888999999998985 33379998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++.++ +++||+ |+++.++|..+...++..|++++.++++. ++.+|++.|+++++ ++
T Consensus 105 ~~~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~~ 162 (384)
T PRK12414 105 AAISAL---------------VHPGDE--VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT-----PR 162 (384)
T ss_pred HHHHHh---------------cCCCCE--EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcC-----cc
Confidence 888876 578886 88899999888777888899999999875 55799999999887 57
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCCCCCCC-
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~lggp~- 304 (625)
+++|++++++||||.+.+ +++|+++|++||+++++|+++..-. ....+.... ..+-.+++.|++|.||.|+
T Consensus 163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl 242 (384)
T PRK12414 163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGW 242 (384)
T ss_pred cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccc
Confidence 999999999999999854 7788999999999999999965311 111121110 0122477889999997564
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
.+|++++++++. ..+.... .....+++.+.+. ++..++ .+......+.+..
T Consensus 243 RiG~~v~~~~l~--~~l~~~~------------------------~~~~~~~s~~~q~--a~~~~l-~~~~~~~~~~~~~ 293 (384)
T PRK12414 243 RVGYCLAPAELM--DEIRKVH------------------------QFMVFSADTPMQH--AFAEAL-AEPASYLGLGAFY 293 (384)
T ss_pred eEEEEecCHHHH--HHHHHHH------------------------hheecCCCcHHHH--HHHHHh-cCChHHHHHHHHH
Confidence 489999988762 2211100 0001122222222 112222 1211223455566
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
++.++++.+.|.+. ++++..+ .++.+.|...+.. ......+++..+++++||.+.+|..|...
T Consensus 294 ~~~r~~l~~~L~~~-g~~~~~~----~gg~~~~~~~~~~------------~~~~~~~~~~~~l~~~gV~v~pg~~f~~~ 356 (384)
T PRK12414 294 QRKRDLLARELAGS-RFELLPS----EGSFFMLARFRHF------------SDESDSDFVLRLIRDARVATIPLSAFYTD 356 (384)
T ss_pred HHHHHHHHHHHHhC-CCeecCC----CcceEEEEccccc------------CCCCHHHHHHHHHHhCCEEEecchhhcCC
Confidence 67788888888876 6776544 2455555333210 01123456655556689999998766411
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+...+++||+++. ++++++..++.|.+
T Consensus 357 -------------------------~~~~~~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 357 -------------------------GTDTGLIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred -------------------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 0124899999984 67888888877753
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=210.68 Aligned_cols=352 Identities=16% Similarity=0.151 Sum_probs=224.2
Q ss_pred CcchHHHHHHHHHhhCCCCC--CCCCCcchhhHHH-HHHHHHHHHHHHHHhCCCCCCcEEE---eCChHHHHHHHHHHHh
Q 043646 87 GRSLRYIEDYIINNVLPFYG--NTHTSDSYVGQRM-TKMVHEASNYIKRCLGGGQADAIIF---CGAGTTAAIKRLQEVM 160 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~--n~~~~~~~~~~~~-~~~~~~~~~~ia~~~g~~~~~~vif---t~sGttaal~~l~~~l 160 (625)
...++.|.+++...+...|+ .|+.. +..|... .++.+.++++.+++|++..+ .+++ ..+|+.+++..+...
T Consensus 44 n~~s~~v~~a~~s~~~~ky~~G~~g~r-~~~G~~~~d~lE~~~~~~~~~~f~~~~~-~~~~nv~~~SG~~AN~av~~aL- 120 (475)
T PLN03226 44 NFTSRAVMEALGSCLTNKYSEGLPGAR-YYGGNEYIDQIETLCQKRALEAFRLDPE-KWGVNVQPLSGSPANFAVYTAL- 120 (475)
T ss_pred ccCCHHHHHHHhhHHhccccCCCCCCc-CcCCChhHHHHHHHHHHHHHHHhCCCcc-eeEEecCcCchHHHHHHHHHHh-
Confidence 34566888888888744333 33332 3333333 34445566778899998876 4545 137888877665443
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcC------CCCchhHHHHHHcCCeEE----EEecC-CCCCCCHHHHHHHHHHhh
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGP------YEHHSNLLSWRQSLAEVV----EIGLD-DNGLLDIEALRSQLELYK 229 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~------~~h~s~~~~~~~~G~~vv----~v~~~-~~~~ld~~~L~~~l~~~~ 229 (625)
++|||+ |+..+ ..|.+.....+..+..+. .++++ .++.+|+++|++++.+
T Consensus 121 ---------------~~pgD~--Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~-- 181 (475)
T PLN03226 121 ---------------LQPHDR--IMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAML-- 181 (475)
T ss_pred ---------------CCCCCE--EEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh--
Confidence 478986 77744 333333322222223222 33444 3689999999999874
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
.++++|++. .+.+|...|+++|.++|+++|+++++|+||++|....+......+++|++++++||||+||.| |++
T Consensus 182 --~~pklIv~~--~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I 256 (475)
T PLN03226 182 --FRPKLIIAG--ASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMI 256 (475)
T ss_pred --cCCeEEEEe--cCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEE
Confidence 467876553 235789999999999999999999999999999988776543334799999999999988998 899
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccc-hhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED-IEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+++++. ..... +| ...+.. + ...... ....+ .|+|++..++ .+++.++ ...+.+.+.++...
T Consensus 257 ~~~~~~--~~~~~----~g-~~~~~d-~----~~~i~~a~~~~~-~g~p~~~~iaal~aAl~~i--~~~~~~~~~~~~~~ 321 (475)
T PLN03226 257 FFRKGP--KPPKG----QG-EGAVYD-Y----EDKINFAVFPGL-QGGPHNHTIAALAVALKQA--MTPEFKAYQKQVKA 321 (475)
T ss_pred EEchhh--ccccc----CC-CccHHH-H----HHHhccccCCcc-CCCchHHHHHHHHHHHHHH--hCcCHHHHHHHHHH
Confidence 988775 22221 11 100000 0 000000 00112 3456555554 3445544 45678888999999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.+ .|++++++... ..++.+.+.+ .++++.++.+.| ++.||.+..+.-+...
T Consensus 322 na~~L~~~L~~-~G~~l~~~~t~--~hi~lv~~~~--------------~gi~~~~~~~~L-~~~~I~~nk~~~p~~~-- 381 (475)
T PLN03226 322 NAAALANRLMS-KGYKLVTGGTD--NHLVLWDLRP--------------LGLTGSRVEKVL-DLAHITLNKNAVPGDS-- 381 (475)
T ss_pred HHHHHHHHHHh-CCCEEEcCCCC--CCEEEEEccC--------------CCCCHHHHHHHH-HHCCCEECCCCCCCCc--
Confidence 99999999988 49999875322 2333332222 235677788888 5689998766532210
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe----cCCCCCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT----FPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis----~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. ...+..+|+. ...-++++|++++.+.|.+++..
T Consensus 382 ~----------------------~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 382 S----------------------ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred c----------------------cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0134568883 34567899999999999998875
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=210.24 Aligned_cols=342 Identities=11% Similarity=0.019 Sum_probs=217.1
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|+.+... ++++.+.+++.+.+.. +....|....+..++.+.+.+++.+..|. +++++|++| +|++++|
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it-~Gs~~al 105 (388)
T PRK07366 31 ELIDLSLGSSDLPAPAHALEAIAQSLHD----PSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPL-IGSQEGT 105 (388)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhC----cccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEEC-CCcHHHH
Confidence 35555544433 3467888888776532 11111211122344555555555555564 444258877 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |++..+.|+.+...++..|++++.++++.+ ..+|++++++.+.
T Consensus 106 ~~~~~~l---------------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~----- 163 (388)
T PRK07366 106 AHLPLAV---------------LNPGDF--ALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL----- 163 (388)
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc-----
Confidence 9998887 578886 999999999998888889999999999753 3678888887775
Q ss_pred CCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCC----c-cccCCCCCCCC-CcEEEEcCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----V-KINLRSRNIDG-YDAIFLATHKFLGG 302 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~----~-~id~~~~~~~~-~D~v~~S~hK~lgg 302 (625)
++++++++++++||||.+.+. ++|+++|++||+++++|+++.--. . ...+....... .-+++.|++|.+|.
T Consensus 164 ~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~ 243 (388)
T PRK07366 164 AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNM 243 (388)
T ss_pred ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence 478999999999999999875 567778999999999999965211 1 11122211111 23567799999986
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIK 381 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~ 381 (625)
|+ .+|+++.++++. +.+.... .....++++.. ..+++..+.....-.+.++
T Consensus 244 ~GlRiG~~v~~~~li--~~l~~~~------------------------~~~~~~~~~~~--~~~a~~~l~~~~~~l~~~~ 295 (388)
T PRK07366 244 GGFRIGFAIGNAQLI--QALRQVK------------------------AVVDFNQYRGI--LNGAIAALTGPQATVQQTV 295 (388)
T ss_pred cchhheehcCCHHHH--HHHHHHH------------------------hhcccCCCHHH--HHHHHHHHhCcHHHHHHHH
Confidence 65 489999887762 2221100 00111221211 1222222211112244566
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+..++++.+.|.++ ++.+..+ .++.+.|.-.++. ...+..++++.|.+++||.+++|..|
T Consensus 296 ~~~~~~r~~l~~~L~~~-~~~~~~p----~~g~f~~~~~~~~------------~~~~~~~~~~~l~~~~gv~v~pg~~f 358 (388)
T PRK07366 296 QIFRQRRDAFINALHQI-GWPVPLP----EATMYVWAKLPEP------------WQGNSVEFCTQLVAQTGVAASPGSGF 358 (388)
T ss_pred HHHHHHHHHHHHHHHHC-CCcccCC----CeeEEEEEECCcc------------cCCCHHHHHHHHHHhCCEEEeCchHh
Confidence 66777788888888776 5554433 3455555554421 01124567777766789999998766
Q ss_pred CchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 462 AGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+.. .++++||+++. ++++++..++.|+++
T Consensus 359 ~~~---------------------------~~~~iRi~~~~--~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 359 GKS---------------------------GEGYVRFALVH--DPDILEEAVERIAAF 387 (388)
T ss_pred CcC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHh
Confidence 311 24899999973 688999998888764
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=207.52 Aligned_cols=343 Identities=13% Similarity=0.074 Sum_probs=218.5
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~ 154 (625)
.+.|..+... ..++.+.+++.+.+..... .|....+..++.+.+.+++.+.+|.. ++++|++| +|+++++.
T Consensus 32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it-~G~~~al~ 105 (391)
T PRK07309 32 ILKLTLGEPDFTTPDHVKEAAKRAIDANQS-----HYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVT-IGATEALS 105 (391)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CChHHHHH
Confidence 4444433332 2356677777766532110 11111123455555666665555553 33479998 78999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++..+ +++||+ |++..+.|..+...++..|++++.++.+.+ ..+|++.|++++++. .++
T Consensus 106 ~~~~~~---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~ 166 (391)
T PRK07309 106 ASLTAI---------------LEPGDK--VLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQ--GDK 166 (391)
T ss_pred HHHHHh---------------cCCCCE--EEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhcc--CCC
Confidence 988876 578885 888889999888888889999999998764 478999999998731 136
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-C
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g 305 (625)
++++++++|+||||.+.+ +++|+++|++||+++++|++++.-.. ..++..... .-.+++.|++|.||.|+ .
T Consensus 167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~-~~~i~~~S~SK~~g~~GlR 245 (391)
T PRK07309 167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLP-DQTILINGLSKSHAMTGWR 245 (391)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhcc-CCEEEEecChhhccCccce
Confidence 899999999999999876 78889999999999999999763221 112211111 22367789999998664 3
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHHHHHHHHHHhh-cCHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIRAALAFWVKEY-IGYEVIKKQ 383 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~-~g~~~i~~~ 383 (625)
+|+++.++++. +.+... ..+. .+++.+.+. ++..++ .+. .-....+++
T Consensus 246 vG~~v~~~~~~--~~~~~~-------------------------~~~~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~~~ 295 (391)
T PRK07309 246 IGLIFAPAEFT--AQLIKS-------------------------HQYLVTAATTMAQF--AAVEAL-TNGKDDALPMKKE 295 (391)
T ss_pred eEEEEeCHHHH--HHHHHH-------------------------HhhcccCCChHHHH--HHHHHH-hCChhHHHHHHHH
Confidence 89999988873 221100 0011 112222221 222222 121 112234455
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.++.++++.+.|.+. ++++..+. ++.+.+...+.. ...+..++++.|.++.||.+.+|..+..
T Consensus 296 ~~~~~~~~~~~l~~~-~~~~~~p~----gg~~~~~~l~~~------------~~~~~~~~~~~l~~~~gv~v~pg~~f~~ 358 (391)
T PRK07309 296 YIKRRDYIIEKMTDL-GFKIIKPD----GAFYIFAKIPAG------------YNQDSFKFLQDFARKKAVAFIPGAAFGP 358 (391)
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----eeEEEEEECCCC------------CCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence 566677888888876 67766553 344444333321 1123457787666668999998876531
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. .++++||+++. +.++++..+++|++++++
T Consensus 359 ~---------------------------~~~~iRi~~~~--~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 359 Y---------------------------GEGYVRLSYAA--SMETIKEAMKRLKEYMEE 388 (391)
T ss_pred C---------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 1 24899999974 678999999999988755
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=208.65 Aligned_cols=427 Identities=16% Similarity=0.122 Sum_probs=265.2
Q ss_pred CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHH
Q 043646 49 KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASN 128 (625)
Q Consensus 49 ~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~ 128 (625)
.+.++.++++.+.+......+.+| | + |+.|-.+.+.++.++..+...+ -|++...+..++.++.+.+++.+
T Consensus 60 ~~~~~~l~~l~~~l~~~sv~~~~P-~-r---y~ghm~~~~~~paila~~~a~~----~N~n~~~~e~SP~~t~lE~~vi~ 130 (608)
T TIGR03811 60 NNMKDVLDELSSRLRTESVPWHSA-G-R---YWGHMNSETLMPAILAYNYAML----WNGNNVAYESSPATSQMEEEVGK 130 (608)
T ss_pred cCHHHHHHHHHHHHhcCCCCCCCc-c-c---eEEECcCCCCHHHHHHHHHHHH----hCCCCCccccCchHHHHHHHHHH
Confidence 457888888888775443333332 1 2 6666666777777776665544 36665566678889999999999
Q ss_pred HHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc-ccchhhh---h-------------------------------hh
Q 043646 129 YIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT-VPSIMRD---K-------------------------------LI 173 (625)
Q Consensus 129 ~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~-~~~~~~~---~-------------------------------~~ 173 (625)
++++++|.+.. ...||++||.+++..+..++... .|-.+++ . +.
T Consensus 131 ~la~l~G~~~~-~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~ 209 (608)
T TIGR03811 131 EFATLMGYKNG-WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIK 209 (608)
T ss_pred HHHHHhCCCCC-CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhh
Confidence 99999999865 45678789999999988887642 1100000 0 00
Q ss_pred h-ccCCC---Cc-eEEEEcCCCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhCCC-CeEEEEecccC
Q 043646 174 T-SLRDE---ER-WVVFLGPYEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAAKR-PMLGSFSACSN 244 (625)
Q Consensus 174 ~-~l~~g---d~-~~Vlv~~~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~-~~lv~~~~~~n 244 (625)
+ +..+| .+ .+++++...|+|+.+++...|. .++.||+|.++++|+++|+++|.+....+. +.+|+.+.+++
T Consensus 210 ~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT 289 (608)
T TIGR03811 210 AHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGST 289 (608)
T ss_pred hhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCc
Confidence 0 00010 11 1588888889999999999888 699999999999999999999986443343 46788999999
Q ss_pred ccccccCHHHHHHHH---HHcCC--EEEEeccCcCCCc-----------ccc-----------C-------CC-----C-
Q 043646 245 VTGIYSDTRSIARLL---HQYGG--FACFDFAASGPYV-----------KIN-----------L-------RS-----R- 284 (625)
Q Consensus 245 ~TG~~~~l~~I~~la---~~~g~--~vivD~A~~~g~~-----------~id-----------~-------~~-----~- 284 (625)
.+|.++|+++|+++| +++|+ |+|||+|.++... |.+ + .+ +
T Consensus 290 ~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~ 369 (608)
T TIGR03811 290 EEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYK 369 (608)
T ss_pred CCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHh
Confidence 999999999999999 67887 6999999776320 100 0 00 0
Q ss_pred CCCCCcEEEEcCCCCCCCCCCceEEEEeccccc--cCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHHH
Q 043646 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQ--LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIVQ 361 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~ 361 (625)
+.+.+|.+++++|||+..|.++|++++++.... +....++....+. ...... ......|+ +...+
T Consensus 370 gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~---------~~p~~~---g~~~legSR~ga~A 437 (608)
T TIGR03811 370 AISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGA---------DIPALL---GAYILEGSKAGATA 437 (608)
T ss_pred cCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccc---------cCcccc---cccceecCCccHHH
Confidence 235899999999999999999999999976421 1111121110000 000000 00001112 11111
Q ss_pred H-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC------CcEEE--eCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 362 M-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN------QNIQV--LGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 362 ~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l------~gv~v--~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
+ +-+++..+-....|+..+..+...+++++.+.|.+. +.+++ +.+ ....+++|...+....+
T Consensus 438 lklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~---pdlniV~Fr~~~~g~~~------ 508 (608)
T TIGR03811 438 ASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTK---PDFNMVDYVFNEKGNDD------ 508 (608)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCC---CCcceEEEEEecCCCcc------
Confidence 0 111122210134477788999999999999999873 45665 443 25789999986542110
Q ss_pred cCCCCCChHHHHHHhhhhcCee----------eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCC--------CCCCCc
Q 043646 433 ERNKPLHGPFVATLFNDLFGIQ----------ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGY--------LGVKPG 494 (625)
Q Consensus 433 ~~~~~l~~~~v~~~L~~~~gI~----------v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~--------~g~~~g 494 (625)
.-..+++.+.+.++..+. +..-.++...||+.+.. +.+.+ .+.+=.
T Consensus 509 ----l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~------------~~~~~~~~~~~~~~~~~~~ 572 (608)
T TIGR03811 509 ----LVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFA------------FVNSLGFSDEEWQRAGKVT 572 (608)
T ss_pred ----HHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHH------------HHHHcCCChhhhccCCceE
Confidence 001345666665554432 11111222223332211 11111 111235
Q ss_pred EEEEec--CCCCCHHHHHHHHHHHHHHHHh
Q 043646 495 WTRITF--PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 495 ~iRis~--~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+|-++ ++.+.++-++.+++.|+..+.+
T Consensus 573 ~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~ 602 (608)
T TIGR03811 573 ILRASVMTPYMNDKENFDEYAPKIKAAMQE 602 (608)
T ss_pred EEEEEecCcccCChhhHHHHHHHHHHHHHH
Confidence 789987 4666778899999999887765
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=213.46 Aligned_cols=342 Identities=15% Similarity=0.048 Sum_probs=227.8
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.++.+.+++.+.+..+..+ .+.....+.+.+...++++.|+++++.+ + .|+|+ +|.++ +..++.++
T Consensus 124 ~~~~i~ea~~~al~~~G~g--~~g~r~~yg~~~~~~~Lee~La~~~~~~-~-~i~~s-~G~~a-~~sai~a~-------- 189 (481)
T PLN02822 124 GNEKIKESCTSALEKYGVG--SCGPRGFYGTIDVHLDCETKIAKFLGTP-D-SILYS-YGLST-IFSVIPAF-------- 189 (481)
T ss_pred CCHHHHHHHHHHHHHhCCC--CcccCccccCHHHHHHHHHHHHHHhCCC-C-EEEEC-CHHHH-HHHHHHHh--------
Confidence 5788999999988664221 1111112345678889999999999975 3 68887 66665 45555555
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh----CCCC-eEEEEeccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA----AKRP-MLGSFSACS 243 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~----~~~~-~lv~~~~~~ 243 (625)
.++|| +|++....|.+...+++..|++++.++.+ |.++++..+++... .+++ ++|+++.++
T Consensus 190 -------~~~gd--~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~ 255 (481)
T PLN02822 190 -------CKKGD--IIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIY 255 (481)
T ss_pred -------CCCCC--EEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence 46787 48899999999988888889999999866 56777776653211 1234 799999999
Q ss_pred CccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC----CCCC--CCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL----RSRN--IDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 244 n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~----~~~~--~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
+++|.+.|+++|.++|++||+++++|++|+.|...-.- ...+ ...+|+++.|++|.+| +.| |+++.++++..
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~G-G~i~g~~~ii~ 333 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TEG-GFCTGSARVVD 333 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hCC-eEEEcCHHHHH
Confidence 99999999999999999999999999999866532110 0011 1257999999999998 444 89888887732
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
.+... +.+. -|....|+..+.+ .++++.. +. .+.+.++.+++++++++.|.
T Consensus 334 --~~~~~--~~~~--------------------~fsa~lPp~~~~Aa~~aL~~l--~~--~~~~~~~l~~~~~~l~~~L~ 385 (481)
T PLN02822 334 --HQRLS--SSGY--------------------VFSASLPPYLASAAITAIDVL--ED--NPSVLAKLKENIALLHKGLS 385 (481)
T ss_pred --HHHhc--CCce--------------------eeccccCHHHHHHHHHHHHHH--Hh--CHHHHHHHHHHHHHHHHHHH
Confidence 22110 0000 0112224443322 2344433 21 24677888999999999999
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
+++++.+..+. ..+++.+.+..... . ..+..-...++++.|++++||.+.++.....+.+
T Consensus 386 ~~~g~~~~~~~---~spi~~l~l~~~~~-~------~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~---------- 445 (481)
T PLN02822 386 DIPGLSIGSNT---LSPIVFLHLEKSTG-S------AKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKC---------- 445 (481)
T ss_pred hcCCcccCCCC---CCCEEEEEeCCCcc-c------ccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCC----------
Confidence 88788775442 45666666532100 0 0000000246788887568999987643221000
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+.++|++++..+|++||++++++|++++.+
T Consensus 446 --------------~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 446 --------------RLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred --------------CCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 01357999999999999999999999988765
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=204.76 Aligned_cols=328 Identities=17% Similarity=0.128 Sum_probs=226.6
Q ss_pred CCCCceEeccCCCCCcch-HHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC-CCCCCcEEEeCChHH
Q 043646 73 FGKRRLTYADHTASGRSL-RYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG-GGQADAIIFCGAGTT 150 (625)
Q Consensus 73 ~g~~~~~Yld~~~~~~~p-~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g-~~~~~~vift~sGtt 150 (625)
.|....+.|+.+-+...| +.+.+++.+.+......|.. ...++++.+++++| .+++ .|+. |+|++
T Consensus 19 ~g~~~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~-~V~~-gnGsd 85 (356)
T COG0079 19 YGLPGIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPE-NVLV-GNGSD 85 (356)
T ss_pred cCCccceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcc-eEEE-cCChH
Confidence 343457888877766554 77888887766432222322 24568999999999 5444 5666 59999
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
+.|..+++++ ..+||+ |+++.++|..+...++..|++++.++.++ ..+|++.+.+++.
T Consensus 86 e~i~~l~~~~---------------~~~gd~--vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~---- 143 (356)
T COG0079 86 ELIELLVRAF---------------VEPGDT--VLIPEPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIR---- 143 (356)
T ss_pred HHHHHHHHHh---------------hcCCCE--EEEcCCChHHHHHHHHhcCCeEEEecccc-cccCHHHHHHhhh----
Confidence 9999999998 578886 99999999999888999999999999988 8899999999988
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCc--EEEEcCCCCCCCCC-C
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYD--AIFLATHKFLGGPG-T 305 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D--~v~~S~hK~lggp~-g 305 (625)
+++++|++|+|+||||...+.++|.+++... +.+|++|+|+.--.. .+.-.+.. ..+ ++.-|++|+||-++ .
T Consensus 144 -~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~-~~~~~l~~-~~~nlivlRTfSKa~gLAGlR 220 (356)
T COG0079 144 -DKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP-ESSLELLK-YPPNLIVLRTFSKAFGLAGLR 220 (356)
T ss_pred -cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC-chhhhhcc-CCCCEEEEEecHHhhhcchhc
Confidence 5799999999999999999999988888864 789999999432111 11111101 233 55569999998765 3
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+|+++.+.++.. .+.+.. ..-+.+..+. .++.+.+ ....-++...++..
T Consensus 221 lGy~ia~~~~i~--~l~~vr---------------------------~p~~v~~~a~-~aa~aal-~~~~~~~~~~~~~~ 269 (356)
T COG0079 221 VGYAIANPELIA--ALNKVR---------------------------PPFNVSSPAL-AAAIAAL-RDADYLEESVERIR 269 (356)
T ss_pred eeeccCCHHHHH--HHHHhc---------------------------CCCCCCHHHH-HHHHHHc-ccHHHHHHHHHHHH
Confidence 999999888732 221111 0001111111 1111111 12233556677788
Q ss_pred HHHHHHHHhhCCCCcEE-EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 386 VYIESALGRILPNQNIQ-VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~-v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
..++++.+.|+.++ +. ++... ++|.+...+.. - ...+.+.|.+ +||.+|.... .
T Consensus 270 ~~r~rl~~~l~~~~-~~~v~pS~-----aNFvlv~~~~~--------------~-~~~l~~~L~~-~giivR~~~~-~-- 324 (356)
T COG0079 270 EERERLYAALKALG-LFGVFPSQ-----ANFVLVRVPDA--------------E-AAALAEALLK-KGILVRDCSS-V-- 324 (356)
T ss_pred HHHHHHHHHHHhCC-CCeecCCC-----CcEEEEECCCc--------------c-HHHHHHHHHH-CCEEEEeCCC-C--
Confidence 88999999999986 54 44332 55555554321 1 3368888865 6999994321 1
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+..++++||+++ |++|.++++++|++++..
T Consensus 325 -------------------------~~~~~~lRitvg---t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 325 -------------------------GLLPGYLRITVG---TPEENDRLLAALREVLKG 354 (356)
T ss_pred -------------------------CCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 113589999999 999999999999988754
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-21 Score=207.01 Aligned_cols=344 Identities=14% Similarity=0.043 Sum_probs=213.7
Q ss_pred CceEeccCCCC----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh------CCCCCCcEEEe
Q 043646 76 RRLTYADHTAS----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL------GGGQADAIIFC 145 (625)
Q Consensus 76 ~~~~Yld~~~~----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~------g~~~~~~vift 145 (625)
+..+.|+.+.. .+.|+.+.+++.+.+......+. ..+ ..++|+.+++++ +++++ +|++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~------~~G----~~~lr~~ia~~~~~~~~~~~~~~-~i~~t 101 (404)
T PRK09265 33 HKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSD------SKG----LFSARKAIMQYYQQKGIPDVDVD-DIYIG 101 (404)
T ss_pred CCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCC------CCC----cHHHHHHHHHHHhccCCCCCCcc-cEEEe
Confidence 35667765433 23677888888776532211111 111 234666666666 56665 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRS 223 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~ 223 (625)
+|+++++..++.++ +++||+ |+++.++|..+...++..|++++.++.+. ++.+|++++++
T Consensus 102 -~G~~~~l~~~~~~~---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~ 163 (404)
T PRK09265 102 -NGVSELIVMAMQAL---------------LNNGDE--VLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRS 163 (404)
T ss_pred -CChHHHHHHHHHHh---------------CCCCCE--EEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHH
Confidence 89999999888876 578885 99999999998888888899999888764 35689999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcC
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLAT 296 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~ 296 (625)
++. +++++|++++|+||||.+.+ +++|+++|+++|+++++|++++.-. ....+.....+..-+++.|+
T Consensus 164 ~~~-----~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 238 (404)
T PRK09265 164 KIT-----PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGL 238 (404)
T ss_pred hcc-----ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecc
Confidence 886 57999999999999999998 8889999999999999999965211 11111111111112445688
Q ss_pred CCCCCCCC-CceEEEEeccccccCCC-CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh
Q 043646 297 HKFLGGPG-TPGILLISKALYQLGSS-PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY 374 (625)
Q Consensus 297 hK~lggp~-g~G~l~v~~~~~~l~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~ 374 (625)
.|.+|.|+ .+|++++.......+.+ .... . ......+++.+.+.+ +..++ .+.
T Consensus 239 SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~~~~q~~--~~~~l-~~~ 293 (404)
T PRK09265 239 SKAYRVAGFRVGWMVLSGPKKHAKGYIEGLD---------------------M-LASMRLCANVPAQHA--IQTAL-GGY 293 (404)
T ss_pred hhhccCcccceEEEEEeCchHHHHHHHHHHH---------------------H-HhccccCCCcHHHHH--HHHHh-cCc
Confidence 99998665 38999874211000000 0000 0 000011222222221 11111 111
Q ss_pred cCHHHH---HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh-HHHHHHhhhh
Q 043646 375 IGYEVI---KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG-PFVATLFNDL 450 (625)
Q Consensus 375 ~g~~~i---~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~-~~v~~~L~~~ 450 (625)
...+.+ .++..+.++++.+.|.+++++++..+ .++.+.|...+... . ...+. ..+.+.| .+
T Consensus 294 ~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p----~~g~~l~~~~~~~~---------~-~~~~~~~~~~~~l-~~ 358 (404)
T PRK09265 294 QSINELILPGGRLYEQRDRAWELLNAIPGVSCVKP----KGALYAFPKLDPKV---------Y-PIHDDEQFVLDLL-LQ 358 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CcceEEEEEecccc---------c-CCCCHHHHHHHHH-Hh
Confidence 111211 12445557778888888778776655 34566665443210 0 00112 3455555 56
Q ss_pred cCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 451 ~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+||.+.+|..|... .++++||+++ .++++++..++.|++++..
T Consensus 359 ~gv~v~pg~~F~~~---------------------------~~~~~Ri~~~--~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 359 EKVLLVQGTGFNWP---------------------------EPDHFRIVTL--PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred CCEEEECchhhCCC---------------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 89999998766311 2489999995 6789999999999987753
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=212.04 Aligned_cols=356 Identities=14% Similarity=0.051 Sum_probs=219.0
Q ss_pred cCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHH
Q 043646 82 DHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 82 d~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~ 159 (625)
|.++....|..+.+++.+.+..... ....|....+..++.+.+.+++.+..|. +++ +|++| +|++++|..++.+
T Consensus 82 ~~~~~~~~P~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it-~Ga~~al~~~~~~ 157 (481)
T PTZ00377 82 DPSVSSLFPADVVARAKEYLNAIGG--GTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPS-DIFLT-DGASSGIKLLLQL 157 (481)
T ss_pred CccccccCCHHHHHHHHHHHHhCCC--cccCcCcccCCHHHHHHHHHHHHHhcCCCCChh-hEEEc-CCHHHHHHHHHHH
Confidence 4445555677888887765543211 1222333334455555555555554454 344 89998 8999999999888
Q ss_pred hcccccchhhhhhhhcc-CCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhh-CCCCe
Q 043646 160 MGITVPSIMRDKLITSL-RDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKA-AKRPM 235 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~-~~~~~ 235 (625)
+ + ++||+ |+++.+.|+.+...++..|++++.++++++ +.+|+++|++++++... ..+++
T Consensus 158 l---------------~~~~gD~--Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k 220 (481)
T PTZ00377 158 L---------------IGDPSDG--VMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPR 220 (481)
T ss_pred h---------------ccCCCCE--EEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCee
Confidence 7 4 58886 999999999999889999999999998753 47999999999874211 12789
Q ss_pred EEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC-C----ccccC----CCCCCC---CC-cEEEEcCCCC
Q 043646 236 LGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-Y----VKINL----RSRNID---GY-DAIFLATHKF 299 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g-~----~~id~----~~~~~~---~~-D~v~~S~hK~ 299 (625)
++++++|+||||.+.+ +++|+++|++||+++|+|+++.-- + ....+ ..+..+ +. -+++.|++|.
T Consensus 221 ~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~ 300 (481)
T PTZ00377 221 ALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKG 300 (481)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcc
Confidence 9999999999999988 788999999999999999996521 1 00111 011000 01 1455699997
Q ss_pred C-CCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-
Q 043646 300 L-GGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE- 373 (625)
Q Consensus 300 l-ggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~- 373 (625)
+ +-|+ .+|++++ ++++. +.+... .....+.+.+.+.+ +..++..
T Consensus 301 ~~~~~GlRiG~~~~~~~p~~li--~~l~~~-------------------------~~~~~~~~~~~Q~a---~~~~l~~~ 350 (481)
T PTZ00377 301 IIGECGRRGGYFELTNIPPEVR--EQIYKL-------------------------ASINLCSNVVGQLM---TGLMCNPP 350 (481)
T ss_pred cccCCcCceEEEEEeCCCHHHH--HHHHHH-------------------------hheecCCChHHHHH---HHHHhCCC
Confidence 5 4233 3899987 55552 111100 00011222223322 1111110
Q ss_pred --hcC--------HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC-hHH
Q 043646 374 --YIG--------YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH-GPF 442 (625)
Q Consensus 374 --~~g--------~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~-~~~ 442 (625)
..+ ++.+.++.++.++.+.+.|.+++++++..+. ++.+.|.-..-...- .. . .+...+. ..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~----gg~fl~~~~~l~~~~-~~-~-~~~~~~~~~~~ 423 (481)
T PTZ00377 351 REGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVE----GAMYAFPRIELPEKA-IQ-E-AKERGLAPDVL 423 (481)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCC----eeEEEEeeccCchhh-HH-H-HHhcCCCcHHH
Confidence 001 1222233456677888999888888887653 455555322100000 00 0 0001111 234
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++..+++++||.+.+|..|+... .++++|||++ .++++++..++.|+++++.
T Consensus 424 ~~~~ll~~~gV~v~pG~~F~~~~--------------------------~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~ 475 (481)
T PTZ00377 424 YCLELLESTGIVVVPGSGFGQKP--------------------------GTYHFRITIL--PPEEQIEEMVKKIKEFHES 475 (481)
T ss_pred HHHHHHHHcCEEEeCCcccCCCC--------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 45555567899999998775210 1378999998 6788999999999988765
Q ss_pred h
Q 043646 523 G 523 (625)
Q Consensus 523 ~ 523 (625)
.
T Consensus 476 ~ 476 (481)
T PTZ00377 476 F 476 (481)
T ss_pred H
Confidence 4
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=210.98 Aligned_cols=315 Identities=13% Similarity=0.047 Sum_probs=198.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
+++.+.+++.+.+... . .+ ......+++++++++++| ++ +++++++|+ +++..++.++
T Consensus 10 ~~~~v~~a~~~~~~~~----~--~~----~~~~~~~~l~~~~a~~~g--~~-~~~~~~~gt-~a~~~~~~~l-------- 67 (338)
T cd06502 10 PTPEMLEAMAAANVGD----D--VY----GEDPTTAKLEARAAELFG--KE-AALFVPSGT-AANQLALAAH-------- 67 (338)
T ss_pred CCHHHHHHHHhcccCC----c--cc----CCCHHHHHHHHHHHHHhC--CC-eEEEecCch-HHHHHHHHHh--------
Confidence 5668888887654211 0 11 112457788999999999 33 577776665 6677777766
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHH---HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh--hCCCCeEEEEeccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLS---WRQSLAEVVEIGLDDNGLLDIEALRSQLELYK--AAKRPMLGSFSACS 243 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~--~~~~~~lv~~~~~~ 243 (625)
+++||+ |++++.+|.++... .+..|++++.++.+. +.+|+++|++++++.. ..+++++|++++++
T Consensus 68 -------~~~gd~--v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~ 137 (338)
T cd06502 68 -------TQPGGS--VICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTT 137 (338)
T ss_pred -------cCCCCe--EEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeec
Confidence 478885 88999999876532 344799999999765 6799999999997310 01268999999999
Q ss_pred Ccccc--ccCHHHHHHHHHHcCCEEEEeccCcCCC---ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 244 NVTGI--YSDTRSIARLLHQYGGFACFDFAASGPY---VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 244 n~TG~--~~~l~~I~~la~~~g~~vivD~A~~~g~---~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
|++|. ..++++|+++|+++|+++++|+|+..+. ....+..+ ..++|+++.|+||+++.|+| ++++.++++.
T Consensus 138 n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~~~~~~g-~~~~~~~~~~-- 213 (338)
T cd06502 138 EGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY-KSGVDSVSFCLSKGGGAPVG-AVVVGNRDFI-- 213 (338)
T ss_pred CCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHH-HhcCCEEEEeccccCCCccc-eEEECCHHHH--
Confidence 97443 3557889999999999999999863221 11111111 12689999999999998874 4555676662
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
+.+.+... ...++....+.. .+++..+ +..+...+.++...+++++.+.|.+
T Consensus 214 ~~~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~L--~~~~~~~~~~~~~~~~~~l~~~L~~ 266 (338)
T cd06502 214 ARARRRRK-------------------------QAGGGMRQSGFLAAAGLAAL--ENDLWLRRLRHDHEMARRLAEALEE 266 (338)
T ss_pred HHHHHHHH-------------------------HhCCChhhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHh
Confidence 22211110 001222222222 2222222 2334555667888889999999988
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhh--hcCeeeecCCCCCchhhHhhhcCChh
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFND--LFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~--~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
++ +.+..+ ..+++.+...... .-...+.+.+.+ ++||.++..
T Consensus 267 ~~-~~~~~~----~~~~~~v~~~~~~--------------~~~~~l~~~l~~~~~~gi~~~~~----------------- 310 (338)
T cd06502 267 LG-GLESEV----QTNIVLLDPVEAN--------------AVFVELSKEAIERRGEGVLFYAW----------------- 310 (338)
T ss_pred cC-CCcccc----cCCeEEEecCCcc--------------HHHHHHHHHHHHhhhCCEEEEec-----------------
Confidence 74 433322 3455544432110 001122222210 358877531
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
..+++||+++++++++|+++++++++.
T Consensus 311 ----------------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 311 ----------------GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ----------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 126799999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=205.49 Aligned_cols=342 Identities=18% Similarity=0.107 Sum_probs=220.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|..+... +.++.+.+++.+.+.... . .|....+..++.+++.+++.+..|. +++.+|++| +|++.++
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~----~-~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t-~G~~~al 102 (387)
T PRK07683 29 NLISLTIGQPDFPTPSHVKEAAKRAITENY----T-SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVT-IGASEAI 102 (387)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CChHHHH
Confidence 34555555433 345678888877664321 1 1211122344444555555444454 333268998 7899999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~ 232 (625)
..++..+ +++||+ |+++.+.|+.+...++..|++++.++.+.+ ..+|.+++++.+. +
T Consensus 103 ~~~~~~l---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-----~ 160 (387)
T PRK07683 103 DIAFRTI---------------LEPGTE--VILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAIT-----E 160 (387)
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcC-----c
Confidence 9988876 578885 999999988888788889999999998764 4678899999886 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-CCCCCcEEEEcCCCCCCCCC-
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-NIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~~~~~D~v~~S~hK~lggp~- 304 (625)
+++++++++++||||.+.+ +++|+++|+++|+++++|++++.... ...+... +..+-.+++.|++|.+|.|+
T Consensus 161 ~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGl 240 (387)
T PRK07683 161 KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGW 240 (387)
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccc
Confidence 7899999999999999976 78889999999999999999764321 1112211 01123577889999998664
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC-CChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG-GTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|++++++++.+ .+... ..+.. +.+.+.+ .++..++.....-.+.++++
T Consensus 241 RiG~i~~~~~l~~--~~~~~-------------------------~~~~~~~~~~~~q--~~~~~~l~~~~~~~~~~~~~ 291 (387)
T PRK07683 241 RIGFLFAPSYLAK--HILKV-------------------------HQYNVTCASSISQ--YAALEALTAGKDDAKMMRHQ 291 (387)
T ss_pred eeEEEEcCHHHHH--HHHHH-------------------------HHhccCCCChHHH--HHHHHHHhCChHHHHHHHHH
Confidence 4899999887622 11100 01111 1222222 22233331111123455666
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+..++++.+.|.+. ++.+..+ .++.+.+...+.. .++..+++..+.+++||.+++|..|..
T Consensus 292 ~~~~~~~~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~ll~~~gI~v~pg~~f~~ 353 (387)
T PRK07683 292 YKKRRDYVYNRLISM-GLDVEKP----TGAFYLFPSIGHF-------------TMSSFDFALDLVEEAGLAVVPGSAFSE 353 (387)
T ss_pred HHHHHHHHHHHHHHc-CCcccCC----CeeEEEEEecccC-------------CCCHHHHHHHHHHhCCEEEcCchhhCC
Confidence 677788888888775 6665544 3455555444321 234556776655678999998876641
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. .++++||+++. +++++...++.|.+++..
T Consensus 354 ~---------------------------~~~~~Ri~~~~--~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 354 Y---------------------------GEGYVRLSYAY--SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred C---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 1 24899999984 688999999998887654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=209.51 Aligned_cols=342 Identities=15% Similarity=0.098 Sum_probs=219.7
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
...++|+.+... +.++.+.+++.+.+... .. .|....+..++.+.+.+++.+.+|. +++ +|++| +|++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~t-~G~~~a 102 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG----VT-QYTSALGLAPLREAIAAWYARRFGLDVAPE-RIVVT-AGASAA 102 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHhCCCCChH-hEEEe-cCcHHH
Confidence 457888887765 35678888887766421 01 1211222344555555555555564 444 79998 789999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
|..++.++ +++||+ |+++.++|+.+...++..|++++.++++. ++.+|+++|++.+.
T Consensus 103 l~~~~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~---- 161 (388)
T PRK07337 103 LLLACLAL---------------VERGDE--VLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG---- 161 (388)
T ss_pred HHHHHHHh---------------cCCCCE--EEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC----
Confidence 99988877 578886 99999999999888888899999999875 35899999999887
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC-CCcc--ccCCCCCCCCCcE-EEEcCCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG-PYVK--INLRSRNIDGYDA-IFLATHKFLGGP 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~-g~~~--id~~~~~~~~~D~-v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.+ +++|+++|+++|+++++|+++.. .+.. .....+ +.++ ++.|++|.||.|
T Consensus 162 -~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~vi~~~S~SK~~~~~ 237 (388)
T PRK07337 162 -ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL---GDDVITINSFSKYFNMT 237 (388)
T ss_pred -ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhc---cCCEEEEEechhhcCCc
Confidence 57899999999999999876 67888999999999999998652 2111 111111 2344 456999999856
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh-cCHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY-IGYEVIK 381 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~-~g~~~i~ 381 (625)
+ .+|++++++++. ..+.... .....+.+.+.+.+ +..++..+. ...++.+
T Consensus 238 G~RiG~~~~~~~l~--~~l~~~~------------------------~~~~~~~s~~~q~~--~~~~l~~~~~~~~~~~~ 289 (388)
T PRK07337 238 GWRLGWLVVPEALV--GTFEKLA------------------------QNLFICASALAQHA--ALACFEPDTLAIYERRR 289 (388)
T ss_pred hhheeeeecCHHHH--HHHHHHH------------------------HHhccCCChHHHHH--HHHHhccCchHHHHHHH
Confidence 5 389999987762 2211100 00111222222221 122221010 1133445
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
++.++.++++.+.|.++ ++.+. .| .++.+.|.-.+... ....++..++++.|.+++||.+.+|..
T Consensus 290 ~~~~~~r~~~~~~L~~~-~~~~~~~p----~~g~f~~~~~~~~~---------~~~~~~~~~~~~~ll~~~gv~v~pg~~ 355 (388)
T PRK07337 290 AEFKRRRDFIVPALESL-GFKVPVMP----DGAFYVYADCRGVA---------HPAAGDSAALTQAMLHDAGVVLVPGRD 355 (388)
T ss_pred HHHHHHHHHHHHHHHhc-CCccccCC----CeeEEEEEeccccc---------CCCCCCHHHHHHHHHHhCCEEEeCchh
Confidence 56666677888888775 55432 23 34555555443210 001134567887766778999999877
Q ss_pred CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 461 CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 461 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
|+.+ . .++++||+++. ++++++..++.|.++
T Consensus 356 f~~~--~------------------------~~~~~Ri~~~~--~~~~l~~~l~rl~~~ 386 (388)
T PRK07337 356 FGPH--A------------------------PRDYIRLSYAT--SMSRLEEAVARLGKL 386 (388)
T ss_pred hCCC--C------------------------CCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 6421 0 24899999984 577777777777654
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=215.44 Aligned_cols=309 Identities=16% Similarity=0.147 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.+++++|++ . .+++ ++|+.+ +..++. + +++||+ |+++...|+++
T Consensus 48 y~r~~~p~~~~le~~lA~l~g~~-~-~v~~-~sG~~a-i~~~l~-~---------------l~~Gd~--Vlv~~~~y~~~ 105 (390)
T PRK08064 48 YSRSGNPTREALEDIIAELEGGT-K-GFAF-ASGMAA-ISTAFL-L---------------LSKGDH--VLISEDVYGGT 105 (390)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC-C-eEEE-CCHHHH-HHHHHH-H---------------hCCCCE--EEEccCccchH
Confidence 34444556788999999999986 3 5666 488764 555544 2 468886 88899999876
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...| +..|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|.++||++|+++++|+
T Consensus 106 ~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~-----~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~ 175 (390)
T PRK08064 106 YRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIK-----PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDN 175 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEEC
Confidence 5444 3479999999864 7899999887 589999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.+.....+ ++ ++|+++.|+||+++|+.+ .|++++++ ++ .+.+.+...++
T Consensus 176 a~~~~~~~~~~-~~---g~Divv~S~tK~~~G~~~~laG~~v~~~~~~--~~~l~~~~~~~------------------- 230 (390)
T PRK08064 176 TFLTPLLQKPL-DL---GADVVLHSATKFLAGHSDVLAGLAVVKDEEL--AQKLYFLQNSF------------------- 230 (390)
T ss_pred CCCcccccCch-hh---CCcEEEeecceeccCCccceeEEEEeCCHHH--HHHHHHHHHhc-------------------
Confidence 98876543333 23 789999999999998876 48787764 33 12222221111
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCC-------------CCCCcc
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNT-------------SVKRQA 413 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~-------------~~~~~~ 413 (625)
|...... .+.+.. ..........++....+..+.+.|++.|.+ +++.|. ....++
T Consensus 231 -------g~~~~~~--~a~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg 299 (390)
T PRK08064 231 -------GAVLGVQ--DCWLVL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGA 299 (390)
T ss_pred -------CCCCCHH--HHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcce
Confidence 1110000 000100 011112333444455567777777776654 333331 124677
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe---eeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI---QARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI---~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
+++|.+.. ...+.+.+ +..++ .++-|..++. |..-.+..+..+...
T Consensus 300 ~~sf~~~~------------------~~~~~~f~-~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~--------- 351 (390)
T PRK08064 300 VLSFTLQS------------------EEAVRQFV-SHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERD--------- 351 (390)
T ss_pred EEEEEECC------------------HHHHHHHH-HhCCcceEcccCCCCcceeECCcccccccCCHHHHH---------
Confidence 88988732 12333333 33455 6666632210 100000011111100
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 488 YLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 488 ~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..|+.++.+|+|+|.++.++.++.|.++|+++
T Consensus 352 ~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 352 ERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred hcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 13456799999999999999999999999874
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=206.50 Aligned_cols=337 Identities=11% Similarity=0.027 Sum_probs=215.2
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-----CCCCCCcEEEeCChHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-----GGGQADAIIFCGAGTT 150 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-----g~~~~~~vift~sGtt 150 (625)
..++|+.+... +.|+.+.+++.+........+. ..+ ..++|+.+++++ +++++ +|++| +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~------~~g----~~~lr~~ia~~~~~~~~~~~~~-~i~~t-~G~~ 98 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSH------SQG----IPELREAFAKYYKKWGIDVEPD-EILIT-NGGS 98 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCC------CCC----CHHHHHHHHHHHHHhCCCCCcc-eEEEc-CChH
Confidence 47889888765 4677888888665432211111 111 234556666655 34555 89998 7889
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CC-C-CCHHHHHHHHHH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NG-L-LDIEALRSQLEL 227 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~-~-ld~~~L~~~l~~ 227 (625)
+++..++..+ +++||+ |+++.+.|..+...++..|++++.++++. ++ . .++++|+++++
T Consensus 99 ~al~~~~~~l---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~- 160 (397)
T PRK07568 99 EAILFAMMAI---------------CDPGDE--ILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT- 160 (397)
T ss_pred HHHHHHHHHh---------------cCCCCE--EEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC-
Confidence 9999888776 478885 88888777776666677899999999863 33 2 36789998886
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKF 299 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~ 299 (625)
+++++|++++|+||||.+.+ +++|+++|+++|+++++|++++.-. ....+.... ...--+++.|++|.
T Consensus 161 ----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~ 236 (397)
T PRK07568 161 ----PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR 236 (397)
T ss_pred ----ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhh
Confidence 57899999999999999975 6889999999999999999965211 111111110 01123667799999
Q ss_pred CCCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcC
Q 043646 300 LGGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIG 376 (625)
Q Consensus 300 lggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g 376 (625)
++.|+ .+|+++++ +++. ..+... .. ...+++.+.+.+ +..++.. ...
T Consensus 237 ~~~~G~R~G~~~~~~~~~~--~~~~~~------------------------~~-~~~~~s~~~q~~---~~~~l~~~~~~ 286 (397)
T PRK07568 237 YSACGARIGCLISKNKELI--AAAMKL------------------------CQ-ARLSPPTLEQIG---AAALLDTPESY 286 (397)
T ss_pred ccCCCcceEEEecCCHHHH--HHHHHH------------------------hh-ccCCCCcHHHHH---HHHHhhCCHHH
Confidence 98554 48998875 3442 111000 00 011223333321 1112111 112
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh-----c
Q 043646 377 YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL-----F 451 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~-----~ 451 (625)
.+.+.+..+..++.+.+.|.+++++.+..+. ++.+.+.-.+.. +..++++.|.++ .
T Consensus 287 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~----g~~~~~~~l~~~---------------~~~~~~~~l~~~~~~~~~ 347 (397)
T PRK07568 287 FDEVREEYKKRRDILYEELNKIPGVVCEKPK----GAFYIIAKLPVD---------------DAEDFAKWLLTDFNYNGE 347 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceecCCC----cceEEEEecCCC---------------CHHHHHHHHHhhcccccc
Confidence 3455666677788888999888777765442 344444433321 245777777653 6
Q ss_pred CeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 452 GIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 452 gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
||.+.+|..|... .+..++++||+++ .++++++..++.|++++++
T Consensus 348 gv~v~pg~~f~~~------------------------~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~ 392 (397)
T PRK07568 348 TVMVAPASGFYAT------------------------PGLGKNEIRIAYV--LNEEDLKRAMEILKEALEK 392 (397)
T ss_pred eEEEeCchHhcCC------------------------CCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHHH
Confidence 9999988765311 0112479999997 3679999999999987765
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=209.00 Aligned_cols=333 Identities=12% Similarity=0.017 Sum_probs=215.5
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
|+.+.+++.+.+... .. .|....+..++.+.+.+++.+.+|.+ ++++|++| +|+++++..++.++
T Consensus 39 ~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~~------- 105 (387)
T PRK07777 39 PPEMLEAAQEAIAGG----VN-QYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVT-VGATEAIAAAVLGL------- 105 (387)
T ss_pred CHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCcHHHHHHHHHHh-------
Confidence 345666666655321 11 12222334566666777777777765 33369998 78888888877766
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC---CCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN---GLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~---~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+++||+ |++..+.|+.+...++..|++++.++++++ +.+|+++|++++. +++++|++++++|
T Consensus 106 --------~~~gd~--vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~l~~p~N 170 (387)
T PRK07777 106 --------VEPGDE--VLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT-----PRTRALIVNSPHN 170 (387)
T ss_pred --------cCCCCE--EEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC-----cccEEEEEcCCCC
Confidence 468885 888888898888778888999999998754 4689999999886 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccc
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKAL 315 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~ 315 (625)
|||.+.+ +++|.++|+++++++++|++++... ....+... ...+.++++.|++|.||.|+ .+|++++++++
T Consensus 171 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l 250 (387)
T PRK07777 171 PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPL 250 (387)
T ss_pred CCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHH
Confidence 9999875 7788999999999999999975311 11112211 11245788899999998664 37999988776
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
. +.+.... .......+...+.+ +..++.....-.+.++++..+.++++.+.|
T Consensus 251 ~--~~~~~~~------------------------~~~~~~~~~~~q~~--~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 302 (387)
T PRK07777 251 I--AAVRAAK------------------------QYLTYVGGAPFQPA--VAHALDHEDAWVAALRDSLQAKRDRLAAGL 302 (387)
T ss_pred H--HHHHHHH------------------------hhcccCCCCHHHHH--HHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111000 00001111222211 111221111123455667777788888888
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
.++ ++++..+. ++.+.+...+.. ...+..++++.|.+++||.+.+|..|..+...
T Consensus 303 ~~~-~~~~~~~~----g~~~~~~~~~~~------------~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~-------- 357 (387)
T PRK07777 303 AEA-GFEVHDSA----GTYFLCADPRPL------------GYDDGTEFCRALPERVGVAAIPMSVFYDPADA-------- 357 (387)
T ss_pred HhC-CCCccCCC----cceEEEeccccc------------CCCCHHHHHHHHHHhCCEEEeCchHhCCCCcC--------
Confidence 876 66665442 344444332211 01245688999977789999998766421000
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++. ++++++..++.|+++..
T Consensus 358 ----------------~~~~~Ri~~~~--~~~~l~~~l~~l~~~~~ 385 (387)
T PRK07777 358 ----------------WNHLVRFAFCK--RDDTLDEAIRRLRALRG 385 (387)
T ss_pred ----------------CCCeEEEEecC--CHHHHHHHHHHHHHHhc
Confidence 24789999974 68999999998887653
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-21 Score=205.97 Aligned_cols=302 Identities=15% Similarity=0.110 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH
Q 043646 120 TKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (625)
..+.+.+.+++.+..| .+++ +|++| +|++.++..++.++ +++||+ |+++.+.|+.+...
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~~-~i~it-~G~~~al~~~~~~~---------------~~~gd~--vlv~~p~y~~~~~~ 129 (384)
T PRK06348 69 VELIEEIIKYYSKNYDLSFKRN-EIMAT-VGACHGMYLALQSI---------------LDPGDE--VIIHEPYFTPYKDQ 129 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCChh-hEEEc-CChHHHHHHHHHHh---------------cCCCCE--EEEeCCCCcchHHH
Confidence 3455555566655444 4454 89998 89999999998887 578886 99999999999888
Q ss_pred HHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccC
Q 043646 198 WRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAA 272 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~ 272 (625)
++..|++++.++.++ +..+|+++|+++++ +++++|++++++||||.+.+ +++|.++|+++|+++++|+++
T Consensus 130 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y 204 (384)
T PRK06348 130 IEMVGGKPIILETYEEDGFQINVKKLEALIT-----SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVY 204 (384)
T ss_pred HHHcCCEEEEecCCcCcCCcCCHHHHHHhhC-----cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccc
Confidence 888999999998743 34699999999886 57899999999999999987 677888899999999999996
Q ss_pred cCCCc---cccCCCCC-CCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 273 SGPYV---KINLRSRN-IDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 273 ~~g~~---~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+.... ...+.... .....+++.|++|.++.|+ .+|++++++.+. ..+...
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~--~~~~~~----------------------- 259 (384)
T PRK06348 205 DGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYII--ETAKII----------------------- 259 (384)
T ss_pred ccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHH--HHHHHH-----------------------
Confidence 63211 11222211 0123467789999998554 489999987762 111100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
......+.+.+.+. ++..++.....-.+.+++..+..++++.+.|..++++++..+ .++.+.|...+..
T Consensus 260 -~~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p----~gg~~~~~~~~~~---- 328 (384)
T PRK06348 260 -NEGICFSAPTISQR--AAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPP----KGSIYAFINIKKT---- 328 (384)
T ss_pred -HHhccCCCCHHHHH--HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeEEEEEecccC----
Confidence 00001122232222 112222110111334555666667888888888777776654 3455555444321
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
+++..++++.+.+++||.+.+|..|+.. .++++||+++ .+++
T Consensus 329 ---------~~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------~~~~iRi~~~--~~~~ 370 (384)
T PRK06348 329 ---------GLSSVEFCEKLLKEAHVLVIPGKAFGES---------------------------GEGYIRLACT--VGIE 370 (384)
T ss_pred ---------CCCHHHHHHHHHHhCCEEEcCchhhccC---------------------------CCCeEEEEec--CCHH
Confidence 2346678888767789999998776411 2489999996 4788
Q ss_pred HHHHHHHHHHHH
Q 043646 508 EFEFILAALEFI 519 (625)
Q Consensus 508 did~ll~aL~~~ 519 (625)
+++..++.|+++
T Consensus 371 ~l~~al~~l~~~ 382 (384)
T PRK06348 371 VLEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHHhh
Confidence 888888887653
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-21 Score=209.98 Aligned_cols=357 Identities=14% Similarity=0.131 Sum_probs=226.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCC-------CCCCCCcchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEEE
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFY-------GNTHTSDSYVGQRMTKMVHEASNYIKRCLG----GGQADAIIF 144 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~-------~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g----~~~~~~vif 144 (625)
..++-|+.+-...+.+.+.+.+.+...... ..++...|....+..++.+.+.+++.+..| .+++ +|++
T Consensus 46 ~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-~Ivi 124 (496)
T PLN02376 46 HGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-RVVM 124 (496)
T ss_pred CceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-hEEE
Confidence 468999998888777777777766543210 111111122222345566666666666655 5565 8999
Q ss_pred eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCC--CCCCCHHHH
Q 043646 145 CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDD--NGLLDIEAL 221 (625)
Q Consensus 145 t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~~~ld~~~L 221 (625)
| +|+++++..++.++ .+|||. |+++.+.|+.+...++ ..|++++.|+++. +..+|++++
T Consensus 125 t-~Ga~~al~~l~~~l---------------~~pGD~--Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~l 186 (496)
T PLN02376 125 S-GGATGANETIMFCL---------------ADPGDV--FLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAA 186 (496)
T ss_pred c-cchHHHHHHHHHHh---------------CCCCCE--EEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHH
Confidence 8 89999999999988 589986 9999999999987777 4799999999963 457899999
Q ss_pred HHHHHHhh-hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCC----CCC--
Q 043646 222 RSQLELYK-AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSR----NID-- 287 (625)
Q Consensus 222 ~~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~----~~~-- 287 (625)
++++.... ...++++|++++|+||||.+.+ +++|+++|++||+++|+|++++.-. ....+..+ ...
T Consensus 187 e~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~ 266 (496)
T PLN02376 187 DWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEV 266 (496)
T ss_pred HHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhcccccccc
Confidence 88764311 1247899999999999999988 5567889999999999999976421 11111111 000
Q ss_pred CCc--EEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC-ChhHHHHH
Q 043646 288 GYD--AIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG-TPQIVQMI 363 (625)
Q Consensus 288 ~~D--~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g-t~~~~~~~ 363 (625)
..+ +++.|++|.||.|+ .+|+++..++... .... .....+ .+.+.+
T Consensus 267 ~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~-~~~~---------------------------~~~~~~~vs~~~Q-- 316 (496)
T PLN02376 267 NVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVV-SCAR---------------------------KMSSFGLVSSQTQ-- 316 (496)
T ss_pred CCCeEEEEEeccccCCCCcceEEEEEECCHHHH-HHHH---------------------------HHhhcCCCCHHHH--
Confidence 113 34679999998665 4999998544311 1100 000111 222222
Q ss_pred HHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIG----YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g----~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.++..++.+... ....+++.....+.+.+.|.+. ++.++.+ .++.+.|.-.+....+ ....-.
T Consensus 317 -~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~----~aG~flwi~l~~~~~~-------~~~~~~ 383 (496)
T PLN02376 317 -LMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTS----NAGLFAWMDLRHLLRD-------RNSFES 383 (496)
T ss_pred -HHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCC----CceEEEEEEchhhhcc-------CCchhH
Confidence 222222212111 1223445555566777777764 6665544 3466666655421000 000111
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++++.|.++.||.+.+|..|... .+||+||+|+. .++++++..++.|+++
T Consensus 384 e~~l~~~ll~~~gV~v~pGs~F~~~---------------------------~~g~~Ri~fa~-~~~~~l~~al~rl~~~ 435 (496)
T PLN02376 384 EIELWHIIIDKVKLNVSPGSSFRCT---------------------------EPGWFRICFAN-MDDDTLHVALGRIQDF 435 (496)
T ss_pred HHHHHHHHHHcCCEEEeCccccCCC---------------------------CCCEEEEEeeC-CCHHHHHHHHHHHHHH
Confidence 2467787777789999999877411 25899999984 4578999999999988
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 436 l~~ 438 (496)
T PLN02376 436 VSK 438 (496)
T ss_pred HHH
Confidence 764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=206.61 Aligned_cols=343 Identities=15% Similarity=0.107 Sum_probs=210.6
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCC-cchhhHHHHHHHHH-HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTS-DSYVGQRMTKMVHE-ASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~-~~~~~~~~~~~~~~-~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
...++.|.+++...+...|+....+ ....|....+..++ +++.+++++|.+. .+++++||+.+++ .++.++
T Consensus 38 n~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~--alv~~~SG~~A~~-~~l~al---- 110 (416)
T PRK13034 38 NFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY--ANVQPHSGSQANG-AVYLAL---- 110 (416)
T ss_pred cCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc--eEEecCCcHHHHH-HHHHHh----
Confidence 3457899999988863333321111 12223222222232 5559999999873 3455557766644 445554
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchh-HHHHHH--cCCeE--EEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSN-LLSWRQ--SLAEV--VEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~--~G~~v--v~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
+++||+ |++++..|.+. ....+. .+... +.++++. ++.+|++++++++.. .++++|+
T Consensus 111 -----------~~~GD~--Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----~~~klVi 173 (416)
T PRK13034 111 -----------LKPGDT--ILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE----HKPKLII 173 (416)
T ss_pred -----------cCCCCE--EEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh----cCCeEEE
Confidence 578996 99999999873 222221 12222 3444443 467999999999864 3688887
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
++. ..+|...|+++|.++|++||+++++|+||++|....+.......++|++++|+||+++||.| |+++.+++...
T Consensus 174 ~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~- 249 (416)
T PRK13034 174 AGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIA- 249 (416)
T ss_pred ECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHH-
Confidence 754 34688899999999999999999999999988776544332224689999999999988887 77777655421
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
..+.+..+.+. .+.+.....+++++++......+....+++.+++++++++.|.++
T Consensus 250 ~~~~~~~~~~~------------------------~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~ 305 (416)
T PRK13034 250 KKINSAVFPGL------------------------QGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER 305 (416)
T ss_pred HHHHhhcCCcc------------------------cCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence 11111111110 011112222222223321111233456789999999999999887
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~ 478 (625)
|+.+..+. ...+++.+.+... ......+.+.| ++.||.+..-.... ...
T Consensus 306 -G~~~~~~~--~~t~i~~v~~~~~--------------~~~~~~~~~~L-~~~GI~v~~~~~p~---~~~---------- 354 (416)
T PRK13034 306 -GYDLVSGG--TDNHLLLVDLRPK--------------GLSGKDAEQAL-ERAGITVNKNTVPG---DTE---------- 354 (416)
T ss_pred -CCEeccCC--CCCcEEEEEcCCC--------------CCCHHHHHHHH-HhCCcEEeccCCCC---CCc----------
Confidence 88886531 1345554444321 12345666777 45799987421110 000
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPY----YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~----~~t~edid~ll~aL~~~~~~ 522 (625)
+.. -+..+|++++. .++++|+++++++|++++..
T Consensus 355 ---------~p~-~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 355 ---------SPF-VTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred ---------CCC-CCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 000 13569999887 66799999999999998763
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=206.50 Aligned_cols=350 Identities=15% Similarity=0.010 Sum_probs=220.7
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~sGttaal~~ 155 (625)
++.|..+... +.++.+.+++.+.+... . ..|....+..++.+.+.+++++.+|.. .+++|++| +|++.++..
T Consensus 35 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~---~--~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t-~G~~~al~~ 108 (402)
T PRK06107 35 IVDLTVGEPDFDTPDHIKQAAVAAIERG---E--TKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVG-GGAKQAIFL 108 (402)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHcC---C--CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEe-CCHHHHHHH
Confidence 3444433333 23567778777766321 0 012222234567778888888888874 22389998 899999998
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ +++||. |+++.+.|+.+...+...++.++.++++. ++.+|+++|++++. ++
T Consensus 109 ~~~~~---------------~~~gd~--vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----~~ 166 (402)
T PRK06107 109 ALMAT---------------LEAGDE--VIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT-----PR 166 (402)
T ss_pred HHHHh---------------cCCCCE--EEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC-----cC
Confidence 87765 578885 88988888887777777888888888763 34689999999886 57
Q ss_pred CeEEEEecccCccccccCH---HHHHHHHHHc-CCEEEEeccCcCC-C---ccccCCCCCC--CCCcEEEEcCCCCCCCC
Q 043646 234 PMLGSFSACSNVTGIYSDT---RSIARLLHQY-GGFACFDFAASGP-Y---VKINLRSRNI--DGYDAIFLATHKFLGGP 303 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l---~~I~~la~~~-g~~vivD~A~~~g-~---~~id~~~~~~--~~~D~v~~S~hK~lggp 303 (625)
++++++++++||||.+.+. ++|+++|+++ |+++|+|++++.- + ....+..... ...-+++.|++|.|+.|
T Consensus 167 ~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p 246 (402)
T PRK06107 167 TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMT 246 (402)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCc
Confidence 8999999999999999874 6678888998 9999999986521 1 0111111100 12346667899999756
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIK 381 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~ 381 (625)
+ .+|+++.++++. +.+.... .....+...+.+ +++..++.+ ....+...
T Consensus 247 GlRiG~~~~~~~~~--~~~~~~~------------------------~~~~~~~s~~~q---~~~~~~l~~~~~~~~~~~ 297 (402)
T PRK06107 247 GWRIGYAAGPADLI--AAINKLQ------------------------SQSSSCPSSISQ---AAAAAALNGDQSFVTESV 297 (402)
T ss_pred ccceeeeecCHHHH--HHHHHHH------------------------HhcccCCChHHH---HHHHHHhcCChHHHHHHH
Confidence 5 389999888762 2211100 000112222222 222222211 11133445
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC-CChHHHHHHhhhhcCeeeecCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP-LHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~-l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
+...+.++.+.+.|.+++++.+..+. ++.+.|...+..... ....+.. .+..+++..|.+++||.+++|..
T Consensus 298 ~~~~~~~~~~~~~L~~~~g~~~~~p~----gg~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~ 369 (402)
T PRK06107 298 AVYKQRRDYALALLNAIPGLSCLVPD----GAFYLYVNCAGLIGK----TTPEGKVLETDQDVVLYLLDSAGVAVVQGTA 369 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCC----cceEEeeeccccccc----ccccccCCCCHHHHHHHHHHhCCEEEeCccc
Confidence 55666677888888887777766543 455555443210000 0000111 13456776676778999999987
Q ss_pred CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 461 CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 461 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|+ .++++||+++. +++++++.++.|.++++++
T Consensus 370 Fg-----------------------------~~~~iRis~~~--~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 370 YG-----------------------------LSPYFRLSIAT--SLETLEEACARIERAVAAL 401 (402)
T ss_pred cC-----------------------------CCCeEEEEeCC--CHHHHHHHHHHHHHHHHhc
Confidence 64 13899999984 7899999999999887653
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=209.32 Aligned_cols=345 Identities=11% Similarity=-0.031 Sum_probs=218.0
Q ss_pred ceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC-----CCCCCcEEEeC
Q 043646 77 RLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG-----GGQADAIIFCG 146 (625)
Q Consensus 77 ~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g-----~~~~~~vift~ 146 (625)
..+.|..+.. .++++.+.+++.+.+... +...|....+ ..++|+.++++++ ++++ +|++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g----~~~lr~aia~~~~~~~~~~~~~-~i~~t- 101 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSG----KYNGYAPTVG----ALSAREAIASYYHNPDGPIEAD-DVVLC- 101 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhcc----CCCCCCCCCC----CHHHHHHHHHHHhhcCCCCCHH-HEEEC-
Confidence 4555555443 345678888887766431 1001111111 2346666666665 4444 78887
Q ss_pred ChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHH
Q 043646 147 AGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQ 224 (625)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~ 224 (625)
+|+++++..++.++ +++||+ |+++.+.|..+...++..|++++.++++. ++.+|++.|+++
T Consensus 102 ~G~~~al~~~~~~l---------------~~~gd~--v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~ 164 (401)
T TIGR01264 102 SGCSHAIEMCIAAL---------------ANAGQN--ILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESL 164 (401)
T ss_pred cChHHHHHHHHHHh---------------CCCCCE--EEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHH
Confidence 89999999998887 468885 88888888888878888999999998864 457999999988
Q ss_pred HHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcCC
Q 043646 225 LELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLATH 297 (625)
Q Consensus 225 l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~h 297 (625)
+. .+++++++++++||||.+.+ +++|+++|+++|+++++|+++..-. ....+........-+++.|++
T Consensus 165 ~~-----~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfS 239 (401)
T TIGR01264 165 ID-----EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLA 239 (401)
T ss_pred hc-----cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCc
Confidence 86 46899999999999999976 7788999999999999999965211 111222221111135677999
Q ss_pred CCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh--cCCChhHHHHHHHHHHHHHHh-
Q 043646 298 KFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE--NGGTPQIVQMIRAALAFWVKE- 373 (625)
Q Consensus 298 K~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~--~~gt~~~~~~~~aal~~~~~~- 373 (625)
|.|+.|+ .+|++++++....+... ........ ..+.+.+.+. ++..++...
T Consensus 240 K~~~~~GlRiG~iv~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~q~--a~~~~l~~~~ 294 (401)
T TIGR01264 240 KRWLVPGWRLGWIIIHDRRGILRDI-----------------------RDGLVKLSQRILGPCTIVQG--ALPSILLRTP 294 (401)
T ss_pred ccCCCccceEEEEEecCcchhHHHH-----------------------HHHHHHHhhccCCCCcHHHH--HHHHHHHhCc
Confidence 9987665 38999987421000000 00000000 1122222221 122222110
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 374 YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
..-.+..+++.+..++++.+.|..++++.+..| .++.+.|.-.+... -....+..++++.|.+++||
T Consensus 295 ~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~~~~~~~~~---------~~~~~~~~~~~~~l~~~~gI 361 (401)
T TIGR01264 295 QEYFDGTLSVLESNAMLCYGALAAVPGLRPVMP----SGAMYMMVGIEMEH---------FPEFKNDVEFTERLVAEQSV 361 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC----CeeeEEEEEecccc---------cCCCCCHHHHHHHHHHhCCE
Confidence 112345556666667788888888777665444 34666666543100 00012345777777667899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|..|. .++++||+++. .+++++..++.|.+++.+
T Consensus 362 ~v~pg~~f~-----------------------------~~~~iRis~~~--~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 362 FCLPGSCFE-----------------------------YPGFFRVVLTV--PVVMMEEACSRIQEFCER 399 (401)
T ss_pred EEeCchhcC-----------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 999887653 24899999984 578999999999887754
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=212.70 Aligned_cols=305 Identities=14% Similarity=0.154 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR- 199 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~- 199 (625)
...+++++.+++++|++ . .++|+ +|++ ++..++. + +++||+ |++++..|.++...|+
T Consensus 47 p~~~~le~~la~l~g~~-~-~l~~~-sG~~-al~~~l~-l---------------l~~Gd~--Vl~~~~~y~~~~~~~~~ 104 (378)
T TIGR01329 47 PTRTALESLLAKLDKAD-R-AFAFS-SGMA-ALDVITR-L---------------LNNGDE--IIAGDDLYGGTDRLLTQ 104 (378)
T ss_pred hHHHHHHHHHHHHhCCC-c-EEEEC-CHHH-HHHHHHH-H---------------hCCCCE--EEEcCCCchHHHHHHHH
Confidence 34678999999999983 2 45554 7765 6776655 3 478885 8898889988765543
Q ss_pred ---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 200 ---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 200 ---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
..|++++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|+++||++|+++++|++++.++
T Consensus 105 ~~~~~G~~v~~vd~~-----d~~~le~~i~-----~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 105 VVPRSGVVVVHVDTT-----DLDKVKAALG-----PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred HHHHcCcEEEEeCCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 369999999864 8999999987 689999999999999999999999999999999999999998776
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
....+ .+ ++|++++|+||+++||.+ .|+++++++.. .+.+.+... ..
T Consensus 175 ~~~~l-~~---g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~-~~~~~~~~~--------------------------~~ 223 (378)
T TIGR01329 175 LCNPL-EL---GADIVYHSATKFLAGHSDVMAGVLAVKGEEI-AKKVYFLQN--------------------------ST 223 (378)
T ss_pred cCChh-hc---CCcEEEEecceeccCCccceeEEEEeCcHHH-HHHHHHHHH--------------------------hc
Confidence 54444 23 789999999999998876 78888865541 112211111 01
Q ss_pred CC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCC-------------CCCCcceEEEEe
Q 043646 355 GT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNT-------------SVKRQAILSFLV 419 (625)
Q Consensus 355 gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~-------------~~~~~~i~~f~~ 419 (625)
|. .+... +. +..........+.++...++..+.++|++.|.+ +++.|. ....+++++|.+
T Consensus 224 G~~~~~~~---a~--l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~ 298 (378)
T TIGR01329 224 GSGLAPFD---CW--LLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET 298 (378)
T ss_pred CCcCCHHH---HH--HHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE
Confidence 11 11111 11 111122234444555555677777777766655 233221 124678999998
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
.+.. ....++..| +.++|.++.|...+. |..-....+.++... ..|+.++.|
T Consensus 299 -~~~~--------------~~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~li 353 (378)
T TIGR01329 299 -GSVA--------------LSKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVRE---------ERGLPEDLV 353 (378)
T ss_pred -CCHH--------------HHHHHHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHHH---------hcCCCCCeE
Confidence 3210 145788888 678999988765431 221111222221111 256778999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|||+|. ||++.+++-|++.++.
T Consensus 354 R~svGl----E~~~dl~~dl~~al~~ 375 (378)
T TIGR01329 354 RLSVGI----EDVDDLISDLDIAFVT 375 (378)
T ss_pred EEEecc----CCHHHHHHHHHHHHHh
Confidence 999996 5667777777666553
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=209.48 Aligned_cols=341 Identities=12% Similarity=0.051 Sum_probs=224.3
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC--CCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ--ADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~--~~~vift~sGttaal~ 154 (625)
.+.|..+... +.++.+.+++.+.+.... . .|....+...+.+.+.+++.+++|.+. +++|++| +|++.++.
T Consensus 32 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t-~G~~~al~ 105 (386)
T PRK09082 32 AINLSQGFPDFDGPPYLVEALAYAMAAGH----N-QYPPMTGVAALREAIAAKTARLYGRQYDADSEITVT-AGATEALF 105 (386)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCHHHHHH
Confidence 3445443322 335678888877653211 1 122223456778888889988888753 2368888 78888898
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++..+ +++||. |+++.+.|.++...++..|++++.++++. ++.+|+++++++++ ++
T Consensus 106 ~~~~~~---------------~~~gd~--Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~ 163 (386)
T PRK09082 106 AAILAL---------------VRPGDE--VIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS-----PR 163 (386)
T ss_pred HHHHHH---------------cCCCCE--EEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcC-----cc
Confidence 888776 478885 99999999999888888999999999974 56899999999887 57
Q ss_pred CeEEEEecccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCC-CCCCCcEEEEcCCCCCCCCC-
Q 043646 234 PMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPYV----KINLRSR-NIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~-~~~~~D~v~~S~hK~lggp~- 304 (625)
++++++++++||||.+ .++++|.++|++||+++|+|++++.... ...+... ......+++.|++|.+|.|+
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~ 243 (386)
T PRK09082 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGW 243 (386)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhh
Confidence 8999999999999988 4578899999999999999999653211 1112111 11134577789999998665
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
.+|+++.++++. ..+... ......+.+.+.+.+ +.+++.......+.+++..
T Consensus 244 RiG~iv~~~~l~--~~~~~~------------------------~~~~~~~~~~~~q~~--~~~~l~~~~~~~~~~~~~~ 295 (386)
T PRK09082 244 KVGYCVAPAALS--AEFRKV------------------------HQYNTFTVNTPAQLA--LADYLRAEPEHYLELPAFY 295 (386)
T ss_pred hhhhhhCCHHHH--HHHHHH------------------------HhhhcCCCChHHHHH--HHHHHhCChHHHHHHHHHH
Confidence 489999887762 111100 000111223333322 2233311111234455666
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
++.++++.+.|.+. ++++..+ .++.+.+...+.. ..++..++++.|.+++||.+.+|..|...
T Consensus 296 ~~~~~~~~~~L~~~-~~~~~~~----~g~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~v~v~pg~~f~~~ 358 (386)
T PRK09082 296 QAKRDRFRAALANS-RFKLLPC----EGTYFQLVDYSAI------------SDLDDVEFCQWLTREHGVAAIPLSVFYAD 358 (386)
T ss_pred HHHHHHHHHHHHhC-CCcccCC----CeeEEEEEecccc------------CCCCHHHHHHHHHHhCCEEEeCcHHhCCC
Confidence 67788888888774 6666543 3455554443311 02346688888767789999988755310
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+...+++||+++. ++++++..++.|++
T Consensus 359 -------------------------~~~~~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 359 -------------------------PFPHRLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred -------------------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 0024899999984 68888888888764
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=201.95 Aligned_cols=342 Identities=14% Similarity=0.020 Sum_probs=220.4
Q ss_pred ceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEEe
Q 043646 77 RLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG------GQADAIIFC 145 (625)
Q Consensus 77 ~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~------~~~~~vift 145 (625)
+.+.|..+.. .++++.+.+++.+.+.....+ .|.. ..-..++|+.++++++. +++ +|++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~-~ii~t 102 (403)
T TIGR01265 32 PIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN----GYAP----SVGALAAREAVAEYLSSDLPGKLTAD-DVVLT 102 (403)
T ss_pred CeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC----CCCC----CCCCHHHHHHHHHHHHhhcCCCCCHH-HEEEe
Confidence 4666666643 356788999888776432111 1111 11244577777777764 233 79998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRS 223 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~ 223 (625)
+|+++++..++.++ .++||+ |+++.++|......++..|++++.++++. ++.+|++++++
T Consensus 103 -~G~t~al~~~~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 164 (403)
T TIGR01265 103 -SGCSQAIEICIEAL---------------ANPGAN--ILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEA 164 (403)
T ss_pred -cChHHHHHHHHHHh---------------CCCCCE--EEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHH
Confidence 78899999998887 367886 88999998887777788899999998754 45799999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcC
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLAT 296 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~ 296 (625)
++. ++++++++++++||||.+.+ +++|.++|+++|+++|+|++++.-.. ...+..+..+.--+++.|+
T Consensus 165 ~~~-----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 239 (403)
T TIGR01265 165 LAD-----EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGI 239 (403)
T ss_pred HhC-----cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeec
Confidence 886 57899999999999999976 78899999999999999999653211 1122222111113566799
Q ss_pred CCCCCCCC-CceEEEEec--cccc---cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH
Q 043646 297 HKFLGGPG-TPGILLISK--ALYQ---LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW 370 (625)
Q Consensus 297 hK~lggp~-g~G~l~v~~--~~~~---l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~ 370 (625)
+|.|+.|+ .+|++++.+ .+.. +..+.. ......+.+.+.+ .++..+
T Consensus 240 SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~q---~~~~~~ 291 (403)
T TIGR01265 240 SKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN-------------------------LLQRILGPATIVQ---GALPDI 291 (403)
T ss_pred ccccCCCcceEEEEEEeCchhhhHHHHHHHHHH-------------------------HhhhhcCCChHHH---HHHHHH
Confidence 99988775 489998853 2200 000000 0000112222222 222222
Q ss_pred HHh--hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 371 VKE--YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 371 ~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
+.+ ..-++..+++.++.++++.+.|..++++++..|. ++.+.+...+... -....+..++++.|.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~----~g~f~~~~~~~~~---------~~~~~~~~~~~~~l~ 358 (403)
T TIGR01265 292 LENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPE----GAMYLMVKLELEL---------FPEIKDDVDFCEKLV 358 (403)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC----ceeEEEEeccccc---------cCCCCCHHHHHHHHH
Confidence 211 1123455556666678888899887777755442 3555554443210 000123567878776
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++||.+++|..|+ .++++||+++. .++.++..++.|.+++.+
T Consensus 359 ~~~gv~v~pg~~f~-----------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 359 REESVICLPGSAFG-----------------------------LPNWVRITITV--PESMLEEACSRIKEFCER 401 (403)
T ss_pred HhCCEEEeCccccC-----------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 77899999988664 14899999983 577888888888877643
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=203.13 Aligned_cols=343 Identities=13% Similarity=0.125 Sum_probs=233.7
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCC--CCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYG--NTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~--n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
.|+=.++-...|+.|++++.+.+..+.+ -.....++.+..+.++++++++.++++++.+.+.+|+|..+|.|.++..+
T Consensus 8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~ 87 (365)
T PLN02452 8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAI 87 (365)
T ss_pred eEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHH
Confidence 4444555567889999999887754321 11112345677889999999999999999865556776656777778877
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCC---CCCHHHHHHHHHHhhhC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNG---LLDIEALRSQLELYKAA 231 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~---~ld~~~L~~~l~~~~~~ 231 (625)
...+ +.+|++ +++......+.. ...+..|...+........ .++++++ +.+
T Consensus 88 ~~nl---------------~~~~~~--~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~--- 143 (365)
T PLN02452 88 PLNL---------------CKPGDK--ADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT--- 143 (365)
T ss_pred HHhc---------------CCCCCe--EEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC---
Confidence 7765 567776 443333444432 2244567644444222222 4666654 211
Q ss_pred CCCeEEEEecccCcccc-ccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 232 KRPMLGSFSACSNVTGI-YSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~-~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
+..+.|.++|..+.||+ +.|++++.+ +++++|+++++++.++|+.++ ++| ++|.||.+| |.|+|+++
T Consensus 144 ~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~~---~v~--~~saqK~lG-P~Gl~~v~ 211 (365)
T PLN02452 144 PDAKFVHICANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSKY---GVI--YAGAQKNVG-PSGVTIVI 211 (365)
T ss_pred CCCcEEEECCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHHc---CEE--EEecccccC-CCCeEEEE
Confidence 46899999999999999 488887753 899999999999999999987 554 469999996 99999999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
+++++ ++...+... ...++ ..+ .......+||++..+. .++++++. +..|.+.+.+|+++++
T Consensus 212 vr~~~--l~~~~~~~~--~~~~~--------~~~---~~~~s~~~TP~v~~i~~l~~aL~~l~-~~gGl~~~~~r~~~~a 275 (365)
T PLN02452 212 IRKDL--IGNARPITP--GMLDY--------KIH---AENDSLYNTPPCFGIYMCGLVFEDLL-AQGGLKAMEKRNIRKA 275 (365)
T ss_pred EcHHH--HhhcccCCC--chhhH--------HHH---HhcCCccCChhHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence 99998 444332211 01000 000 0112334799988875 46677663 2348999999999999
Q ss_pred HHHHHhhCCCCcEEEeCC-CC-C-CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 389 ESALGRILPNQNIQVLGN-TS-V-KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~-~~-~-~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++.|.+++|+ +.+ .+ . .+..+++|.+.... ....+.+.+. +.|+..-.|...
T Consensus 276 ~~l~~~l~~~~G~--y~~~~~~~~rs~~~vsF~~~~~~---------------~~~~f~~~~~-~~g~~~~~G~r~---- 333 (365)
T PLN02452 276 DLLYDAIDESNGF--YVCPVEKSVRSLMNVPFTLGGSE---------------LEAEFVKEAA-KAGMVQLKGHRS---- 333 (365)
T ss_pred HHHHHHHHhCCCc--ccCCCChHHhCCeEEEEEcCCch---------------hHHHHHHHHH-HCCCcccCCccc----
Confidence 9999999988777 222 21 2 34458888874321 2456777774 478887655321
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ |.+|+|+-..++.++++.|++.+++..++
T Consensus 334 -------------------------~--gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 334 -------------------------V--GGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred -------------------------c--CceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 1 33999998889999999999999987654
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-21 Score=201.54 Aligned_cols=326 Identities=14% Similarity=-0.006 Sum_probs=211.8
Q ss_pred ceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+.. .++|+.+.+++.+.+......+. .. ..++|+.|+++++++++ +|++| +|++++|..
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~----------~~-~~~Lr~aia~~~~v~~~-~I~it-~G~~~~i~~ 89 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSALRHYPD----------PD-YRELRLALAQHHQLPPE-WILPG-NGAAELLTW 89 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC----------cC-HHHHHHHHHHHhCcChh-hEEEC-CCHHHHHHH
Confidence 4566765533 45667888888765532111111 01 24688899999998877 89998 899999998
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCC-----CCHHHHHHHHHHhhh
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGL-----LDIEALRSQLELYKA 230 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~-----ld~~~L~~~l~~~~~ 230 (625)
++.++ .+|++ |+++.+.|+.+...++..|++++.++++.++. .+++.+++..
T Consensus 90 ~~~~l----------------~~g~~--vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~----- 146 (360)
T PRK07392 90 AGREL----------------AQLRA--VYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL----- 146 (360)
T ss_pred HHHHh----------------CCCCe--EEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-----
Confidence 88765 35664 88899999999888999999999999976443 3455554332
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc---ccC-CCCCCCCCcEEEEcCCCCCCCCC-C
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK---INL-RSRNIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~---id~-~~~~~~~~D~v~~S~hK~lggp~-g 305 (625)
.+++++++++++||||.+.+.++|.++++++++ +++|+++.--... ... .......--+++.|++|.|+.|+ .
T Consensus 147 -~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlR 224 (360)
T PRK07392 147 -TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLR 224 (360)
T ss_pred -cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchh
Confidence 368999999999999999999999999999985 6669996522110 010 00110111366679999998554 4
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+|++++++++. +.+.... ...+.+.+.+ .++..++.+..-.+...++.+
T Consensus 225 iG~~v~~~~~~--~~~~~~~--------------------------~~~~~s~~~q---~~~~~~l~~~~~~~~~~~~~~ 273 (360)
T PRK07392 225 LGYAIAHPDRL--QRWQQWR--------------------------DPWPVNGLAA---AAAIAALADRDFQQQTWAWLP 273 (360)
T ss_pred eeeeeCCHHHH--HHHHhhC--------------------------CCCCCCHHHH---HHHHHHhccHHHHHHHHHHHH
Confidence 89999887762 2211000 0011222222 111222212111233445566
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
..++++.+.|+.++++.+..+ .+.+.+.-.+. +..++++.+.+++||.+++|..++..
T Consensus 274 ~~r~~l~~~L~~~~~~~~~~~-----~~~fl~~~~~~----------------~~~~l~~~ll~~~gv~v~pg~~f~~~- 331 (360)
T PRK07392 274 PAREALFQGLASLPGLTPLPS-----AANFLLVQSQG----------------SALQLQEKLLQQHRILIRDCLSFPEL- 331 (360)
T ss_pred HHHHHHHHHHHhCCCcEECCC-----CCCEEEEEcCC----------------CHHHHHHHHHhhCCEEEEeCCCCCCC-
Confidence 677888899988888876532 24444433221 24577777656689999998866411
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +.++.+++.++|+.+.++
T Consensus 332 --------------------------~~~~iRi~~~---~~~~~~~l~~al~~~~~~ 359 (360)
T PRK07392 332 --------------------------GDRYFRVAVR---TEAENQRLLEALAAILAN 359 (360)
T ss_pred --------------------------CCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 2489999998 677889999999887654
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=207.87 Aligned_cols=163 Identities=19% Similarity=0.174 Sum_probs=132.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.++++.|+.. .++|+| .+++++.++.++ +++||+ ||+++.+|.+.
T Consensus 58 y~R~~~p~~~~le~~lA~l~g~~~---av~~sS-Gt~Al~~al~~l---------------l~~Gd~--Vi~~~~~y~~t 116 (433)
T PRK08134 58 YSRISNPTVAVLEERVAALEGGVG---AIATAS-GQAALHLAIATL---------------MGAGSH--IVASSALYGGS 116 (433)
T ss_pred eecCcChHHHHHHHHHHHHhCCCc---EEEeCC-HHHHHHHHHHHH---------------hCCCCE--EEEeCCccHHH
Confidence 334444568889999999999863 477745 455677766655 478885 99999999876
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+ ...|+++++++.+ |+++++++|+ ++|++|++++++||+|.+.|+++|+++||++|+++++|+
T Consensus 117 ~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~-----~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~ 186 (433)
T PRK08134 117 HNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIR-----PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDS 186 (433)
T ss_pred HHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEEC
Confidence 5544 3469999999875 7999999998 689999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
+++.|+...++ .+ ++|++++|.|||++|++. +|.+++.
T Consensus 187 t~a~~~~~~pl-~~---GaD~vv~S~tK~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 187 TFTTPYLLRPF-EH---GADLVYHSATKFLGGHGTAIGGVLVD 225 (433)
T ss_pred CCcccccCCch-hc---CCCEEEeccccccCCCCCceEEEEEe
Confidence 99998876555 44 899999999999997764 5666553
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-20 Score=200.76 Aligned_cols=367 Identities=13% Similarity=0.055 Sum_probs=226.9
Q ss_pred hHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHH
Q 043646 51 SEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHE 125 (625)
Q Consensus 51 ~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 125 (625)
....+..+++.+... ..++.+.|..+.. .++|+.+.+++.+.+... ....|....+..++.+.
T Consensus 15 ~~~~~~~~~~~~~~~--------~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~----~~~~Y~~~~G~~~lr~a 82 (409)
T PLN00143 15 IDDAVKFLKENFNED--------DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSA----KFNSYAPTGGILPARRA 82 (409)
T ss_pred HHHHHHHHHHhcccC--------CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCc----CCCCCCCCCCCHHHHHH
Confidence 566677777754221 0145666665555 478889999988876421 10012111223344444
Q ss_pred HHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 126 ASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 126 ~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
+.+++.+..| .+++ +|++| +|+++++..++.++ +++||+ |+++.+.|+.+....+..|+
T Consensus 83 ia~~~~~~~g~~~~~~-~I~it-~G~~~al~~~~~~l---------------~~~gd~--v~v~~P~y~~~~~~~~~~g~ 143 (409)
T PLN00143 83 IADYLSNDLPYQLSPD-DVYLT-LGCKHAAEIIIKVL---------------ARPEAN--ILLPRPGFPDVETYAIFHHL 143 (409)
T ss_pred HHHHHHhhcCCCCCHh-hEEEe-cChHHHHHHHHHHH---------------cCCCCE--EEEcCCCCcCHHHHHHHcCC
Confidence 5555544434 3444 89998 89999999998887 578886 99999999998878888999
Q ss_pred eEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-
Q 043646 204 EVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV- 277 (625)
Q Consensus 204 ~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~- 277 (625)
+++.++++. +..+|+++|+++++ ++++++++++|+||||.+.+ +++|+++|++|++++++|+++..-..
T Consensus 144 ~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~ 218 (409)
T PLN00143 144 EIRHFDLLPEKGWEVDLDAVEAIAD-----ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFG 218 (409)
T ss_pred EEEEEeccCCCCCcCCHHHHHHhcc-----cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccC
Confidence 999999853 34689999998876 57899999999999999988 66788889999999999999653111
Q ss_pred --c-ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 278 --K-INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 278 --~-id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
+ ..+........-+++.|++|.|+.|+ .+|+++++ +... ++... . ...+....
T Consensus 219 ~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~-~~~~~-~--------------------~~~~~~~~ 276 (409)
T PLN00143 219 SKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGL-LQICE-I--------------------ADSIKKAL 276 (409)
T ss_pred CCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhh-hhhHH-H--------------------HHHHHHHH
Confidence 1 11111111112366779999988775 48999984 3210 11000 0 00000000
Q ss_pred --cCCChhHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 353 --NGGTPQIVQMIRAALAFWVKE--YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 353 --~~gt~~~~~~~~aal~~~~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
....+.+.+ .++..++.+ ....+...++.+...+++.+.|.++++...... ..++.+.|...+...
T Consensus 277 ~~~~~~~~~~q---~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~---p~gg~f~w~~l~~~~---- 346 (409)
T PLN00143 277 NPAPFPPTFIQ---AAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQK---AEGAFFALVKLNLLL---- 346 (409)
T ss_pred hccCCCCchHH---HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC---CCeeEEEEEecchhh----
Confidence 011112222 222222211 112445556666667778888877654332211 234666665543200
Q ss_pred cccccCCCCC-ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 429 NMKIERNKPL-HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 429 ~~~~~~~~~l-~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
-.++ +..+++..+..++||.+++|..|+ .++++||+++ .+++
T Consensus 347 ------~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------------~~~~iRi~~~--~~~~ 389 (409)
T PLN00143 347 ------LEDIEDDMEFCLKLAKEESLIILPGVTVG-----------------------------LKNWLRITFA--VEQS 389 (409)
T ss_pred ------cCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------------CCCeEEEEEc--CCHH
Confidence 0011 244565555566899999997663 2489999998 4689
Q ss_pred HHHHHHHHHHHHHHh
Q 043646 508 EFEFILAALEFIAAY 522 (625)
Q Consensus 508 did~ll~aL~~~~~~ 522 (625)
+++..++.|++++..
T Consensus 390 ~l~~al~rl~~~l~~ 404 (409)
T PLN00143 390 SLEDGLGRLKSFCGR 404 (409)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887753
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=202.95 Aligned_cols=299 Identities=18% Similarity=0.144 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (625)
..++.+.+.+.+...++... .++++++ +|+++++..++.++ ..+|++ |+++...|+++...
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~-~~~t~a~~~~~~~~---------------~~~g~~--vl~~~~~~~~~~~~ 99 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPEEIVVT-NGAQEALSLLLRAL---------------LNPGDE--VLVPDPTYPGYEAA 99 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcceEEEe-cCcHHHHHHHHHHh---------------CCCCCE--EEEcCCCchhHHHH
Confidence 34455555555555554211 2278887 78888888888877 356775 99999999999999
Q ss_pred HHHcCCeEEEEecCCCCCCCH--HHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHH---HHHHHHcCCEEEEeccC
Q 043646 198 WRQSLAEVVEIGLDDNGLLDI--EALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSI---ARLLHQYGGFACFDFAA 272 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~--~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I---~~la~~~g~~vivD~A~ 272 (625)
++..|++++.++.++++..+. +.++..+. +++++|++++++|+||.+.|++++ .++|+++|+++++|+|+
T Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~ 174 (350)
T cd00609 100 ARLAGAEVVPVPLDEEGGFLLDLELLEAAKT-----PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAY 174 (350)
T ss_pred HHHCCCEEEEEecccccCCccCHHHHHhhcC-----ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecch
Confidence 999999999999987766555 55555443 689999999999999999986655 48999999999999998
Q ss_pred cCCCccc-cC---CCCCCCCCcEEEEcCCCCCC-CCCCceEEEEec-cccccCCCCCcccCCceEEeecccccccccccc
Q 043646 273 SGPYVKI-NL---RSRNIDGYDAIFLATHKFLG-GPGTPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 273 ~~g~~~i-d~---~~~~~~~~D~v~~S~hK~lg-gp~g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
+.+...- .. ......+.|+++.|+||+++ ++.++|++++++ .+. +.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~--~~~~~----------------------- 229 (350)
T cd00609 175 AELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL--ERLKK----------------------- 229 (350)
T ss_pred hhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHH--HHHHH-----------------------
Confidence 7643211 10 11122367899999999997 344589999988 552 11110
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEY-IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
..+...++++....... ..+++.. .+.+.+.++.+.+++++.+.|.+++...+..+ ..+.+.+...+..
T Consensus 230 --~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~g~~~~~~~~~~-- 299 (350)
T cd00609 230 --LLPYTTSGPSTLSQAAA--AAALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVKP----SGGFFLWLDLPEG-- 299 (350)
T ss_pred --HHHhcccCCChHHHHHH--HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC----CccEEEEEecCCC--
Confidence 11122234444433222 2222121 45778888889999999999988755543222 3355555443321
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS 505 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t 505 (625)
.+...+.++| .++||.++.+..+.. ..+.++||+++..
T Consensus 300 ------------~~~~~~~~~l-~~~gi~i~~~~~~~~---------------------------~~~~~iRi~~~~~-- 337 (350)
T cd00609 300 ------------DDEEFLERLL-LEAGVVVRPGSAFGE---------------------------GGEGFVRLSFATP-- 337 (350)
T ss_pred ------------ChHHHHHHHH-HhCCEEEeccccccc---------------------------CCCCeEEEEeeCC--
Confidence 1244566666 558999987765531 0257899999877
Q ss_pred HHHHHHHHHHHH
Q 043646 506 NEEFEFILAALE 517 (625)
Q Consensus 506 ~edid~ll~aL~ 517 (625)
.+|+++++++|+
T Consensus 338 ~~~i~~~~~al~ 349 (350)
T cd00609 338 EEELEEALERLA 349 (350)
T ss_pred HHHHHHHHHHhh
Confidence 999999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-21 Score=203.13 Aligned_cols=323 Identities=17% Similarity=0.050 Sum_probs=210.4
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+... .+++.+.+++.+........+.. .. .++++++++++|++++ +|++| +|+++++..
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~----------~g-~~lr~~ia~~~~~~~~-~i~~t-~G~~~~l~~ 103 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDP----------QG-RALREAIAARTGVPAD-RIILG-NGSEDLIAV 103 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC----------cH-HHHHHHHHHHhCcCHH-HEEEc-CCHHHHHHH
Confidence 45666654332 34567777776543221111111 01 2588899999998766 89998 899999999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++.++ +++||. |++..+.|+.....++..|++++.++.+.++.+|+++++++++ ++++
T Consensus 104 ~~~~~---------------~~~gd~--vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~-----~~~~ 161 (371)
T PRK05166 104 ICRAV---------------LRPGDR--VVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVA-----RAPR 161 (371)
T ss_pred HHHHh---------------cCCCCE--EEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhh-----cCCC
Confidence 88876 578885 8889899988877778889999999998778899999999887 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCcc---ccC-CCCC-CCCCcEEEEcCCCCCCCCC-Cce
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVK---INL-RSRN-IDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~---id~-~~~~-~~~~D~v~~S~hK~lggp~-g~G 307 (625)
+|++++++||||.+.+.+++.++++. +++++++|+++..-... ... .... ...--+++.|++|.||.|+ .+|
T Consensus 162 ~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG 241 (371)
T PRK05166 162 MLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVG 241 (371)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhhee
Confidence 99999999999999998877777764 48899999996521110 010 0000 0012367789999998554 489
Q ss_pred EEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 308 ILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 308 ~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
++++. +.+. +.+.... ...+.+.+.+ .+++..+. +....+...+..+.
T Consensus 242 ~~i~~~~~l~--~~~~~~~--------------------------~~~~~~~~~q--~~~~~~l~-~~~~~~~~~~~~~~ 290 (371)
T PRK05166 242 YGLVSDPELV--GLLDRVR--------------------------TPFNVNGAAQ--AAALAALD-DEEHLAKGVALALA 290 (371)
T ss_pred eeecCCHHHH--HHHHHhc--------------------------cCCCCCHHHH--HHHHHHhc-CHHHHHHHHHHHHH
Confidence 98874 4441 1110000 0011222222 12222221 22224455556666
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
.++++.+.|++. ++.+..+ . +.+.+.-.+. +..++++.|.+ +||.+++|..++
T Consensus 291 ~r~~l~~~L~~~-g~~~~p~----~-g~fl~~~~~~----------------~~~~l~~~l~~-~gi~v~p~~~~~---- 343 (371)
T PRK05166 291 ERERLKKELAEM-GYRIAPS----R-ANFLFFDARR----------------PASAVAEALLR-QGVIVKPWKQPG---- 343 (371)
T ss_pred HHHHHHHHHHHC-cCeeCCC----c-CCEEEEeCCC----------------CHHHHHHHHHH-CCeEEecCCCCC----
Confidence 677888888876 6665322 2 3333332211 24678888866 699999875321
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||+++ +.++.++++++|+.+.
T Consensus 344 -------------------------~~~~iRi~~~---~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 344 -------------------------FETFIRVSIG---SPEENDHFVAALDKVL 369 (371)
T ss_pred -------------------------CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 2489999998 7888999999998764
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-21 Score=204.09 Aligned_cols=328 Identities=12% Similarity=0.009 Sum_probs=212.9
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+++.+.+++.+.+.. .+...|....+..++.+.+.+++.+..|. +++ +|++| +|+++++..++.++
T Consensus 43 ~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l------ 110 (386)
T PRK07550 43 PPPELLRALAEAAAD----PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPE-QVHIT-SGCNQAFWAAMVTL------ 110 (386)
T ss_pred CCHHHHHHHHHHHhC----cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEe-cCcHHHHHHHHHHh------
Confidence 456777777665531 11111211223456666677777776664 344 89998 78898899988887
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+++||+ |+++.+.|......++..|++++.++.++ ++.+|+++|+++++ .++++|++++++|
T Consensus 111 ---------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~~v~~~~P~N 174 (386)
T PRK07550 111 ---------AGAGDE--VILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT-----PRTRAIALVTPNN 174 (386)
T ss_pred ---------cCCCCE--EEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc-----ccCcEEEEeCCCC
Confidence 478886 99999999888778888999999999974 34689999999987 4789999999999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccc
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKAL 315 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~ 315 (625)
|||.+.+ +++|+++|++||+++|+|++++.... +...... ....-.+++.|++|.+|.|+ .+|+++.++++
T Consensus 175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~ 254 (386)
T PRK07550 175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPAR 254 (386)
T ss_pred CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHH
Confidence 9999987 67899999999999999999653211 1111000 00112356789999998554 48999988776
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
. ..+.... .....+.+.+.+.+ ..++.-. ....+..+++.++.++++.+.
T Consensus 255 ~--~~~~~~~------------------------~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~ 305 (386)
T PRK07550 255 I--AEIEKFM------------------------DTVAICAPRIGQIAVAWGLPNL---ADWRAGNRAEIARRRDAFRAV 305 (386)
T ss_pred H--HHHHHHH------------------------hhcccCCCcHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111000 00011222222221 1111110 111234455566677788888
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|...+++.+. + .++.+.+...+. .+++..++++.|.+++||.+++|..++..
T Consensus 306 L~~~~~~~~~-~----~g~~~~~~~~~~-------------~~~~~~~l~~~l~~~~gv~v~pg~~f~~~---------- 357 (386)
T PRK07550 306 FARLPGWELL-A----SGAYFAYVRHPF-------------PDRPSREVARRLAKEAGILCLPGTMFGPG---------- 357 (386)
T ss_pred HHhCCCceeC-C----CceEEEEecCCC-------------CCCCHHHHHHHHHHhcCEEEeCchhhCCC----------
Confidence 8776565543 2 234555544432 02346788888767789999998765310
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+++||+++. .++++++.+++.|.++
T Consensus 358 -----------------~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 358 -----------------QEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred -----------------CCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 24799999974 4689999999998764
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=209.03 Aligned_cols=283 Identities=14% Similarity=0.038 Sum_probs=192.6
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.++++.+++++|++++ +|++| +|++++|..++.++ .++| |+ |+++.+.|+.+...++..|
T Consensus 63 ~~Lr~aia~~~~~~~~-~I~it-~Gs~~~i~~~~~~~---------------~~~g~d~--vlv~~P~y~~y~~~~~~~g 123 (354)
T PRK04635 63 PELINAYSAYAGVAPE-QILTS-RGADEAIELLIRAF---------------CEPGQDS--IACFGPTYGMYAISAETFN 123 (354)
T ss_pred HHHHHHHHHHhCcCHH-HEEEe-CCHHHHHHHHHHHh---------------cCCCCCe--EEEcCCChHHHHHHHHHcC
Confidence 4588999999999887 89998 89999999999887 4677 64 8888889888877788889
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc-CCEEEEeccCcCCCccccC
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPYVKINL 281 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~-g~~vivD~A~~~g~~~id~ 281 (625)
++++.+|++.++.+|++.+++ + +++++|++++|+||||.+.+.+++.++++.. ++++++|+++.-......+
T Consensus 124 ~~v~~v~~~~~~~~~~~~l~~-~------~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~ 196 (354)
T PRK04635 124 VGVKALPLTADYQLPLDYIEQ-L------DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSV 196 (354)
T ss_pred CEEEEEecCCCCCCCHHHHHh-c------cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcch
Confidence 999999998777889988862 2 3799999999999999999999999999873 7999999996432111111
Q ss_pred CCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 282 RSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 282 ~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
..+ ....--+++.|++|++|.|+ .+|++++++++. +.+...... .+.+..
T Consensus 197 ~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~--~~l~~~~~~--------------------------~~~~~~ 248 (354)
T PRK04635 197 ADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELI--EILMRVIAP--------------------------YPVPLP 248 (354)
T ss_pred HHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHH--HHHHhhcCC--------------------------CCCCHH
Confidence 011 00011256679999997443 389999988773 222111100 111222
Q ss_pred HHHHHHHHHHHHHhhcCHHHH---HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVI---KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i---~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
.+ .++++++ +..+.+.+ .++....++++.+.|+++++++++.+. +.+.+.-.+
T Consensus 249 ~~--~~a~~~l--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-----g~f~~~~~~--------------- 304 (354)
T PRK04635 249 VS--EIATQAL--SEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN-----GNYVLAKFD--------------- 304 (354)
T ss_pred HH--HHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC-----CcEEEEECC---------------
Confidence 22 2233333 22333333 334455568888999888767776542 223222222
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
+..++.+.|. ++||.++.+.... .++++|||++ +.+|+++++++|
T Consensus 305 --~~~~~~~~l~-~~gv~v~~~~~~~-----------------------------~~~~lRis~~---~~e~~~~l~~al 349 (354)
T PRK04635 305 --DVDAVFKALW-DAGIVARAYKDPR-----------------------------LANCIRFSFS---NRAETDKLIGLI 349 (354)
T ss_pred --CHHHHHHHHH-HCCEEEEECCCCC-----------------------------CCCeEEEEeC---CHHHHHHHHHHH
Confidence 1456777774 5899998432100 2479999987 899999999999
Q ss_pred HHH
Q 043646 517 EFI 519 (625)
Q Consensus 517 ~~~ 519 (625)
++.
T Consensus 350 ~~~ 352 (354)
T PRK04635 350 RNQ 352 (354)
T ss_pred HHh
Confidence 864
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=205.22 Aligned_cols=341 Identities=13% Similarity=0.047 Sum_probs=215.4
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC----CCCCcEEEeCChHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG----GQADAIIFCGAGTTA 151 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~----~~~~~vift~sGtta 151 (625)
..+.|+.+... .+|+.+.+++.+.+......+. ..+..++.+.+.+++.+.+|. +++++|++| +|+++
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it-~Ga~~ 101 (393)
T TIGR03538 29 PPIALSIGEPKHPTPAFVLEALRENLHGLSTYPT------TKGLPELRQAIARWLERRFDLPTGVDPERHVLPV-NGTRE 101 (393)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCC------CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEEC-CCcHH
Confidence 45566554433 4567888888776532211111 122344555556666555454 343368887 89999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~ 229 (625)
+|..++.++ ++|||+..|+++.+.|+.+....+..|++++.++++++ ..+|++++++++.
T Consensus 102 al~~~~~~l---------------~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--- 163 (393)
T TIGR03538 102 ALFAFAQAV---------------INPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVW--- 163 (393)
T ss_pred HHHHHHHHH---------------cCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh---
Confidence 999998887 57888545889999998887778888999999999643 4689999998886
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-----cccC----CCCCC--CCCcEEEEc
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-----KINL----RSRNI--DGYDAIFLA 295 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-----~id~----~~~~~--~~~D~v~~S 295 (625)
.+++++++++++||||.+.+ +++|+++|++||+++++|+++..-.. +... ..... ..--+++.|
T Consensus 164 --~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 241 (393)
T TIGR03538 164 --RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS 241 (393)
T ss_pred --hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence 47899999999999999988 67888899999999999999653211 1110 00100 011267789
Q ss_pred CCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh
Q 043646 296 THKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY 374 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~ 374 (625)
++|.++.|+ .+|+++.++++. ..+... ......+.+.+.+.+ ++..+ ...
T Consensus 242 ~SK~~~~~GlRvG~~i~~~~l~--~~~~~~------------------------~~~~~~~~~~~~q~~--~~~~l-~~~ 292 (393)
T TIGR03538 242 LSKRSNLPGLRSGFVAGDAEIL--KAFLRY------------------------RTYHGCAMPIPTQLA--SIAAW-NDE 292 (393)
T ss_pred chhhcCCcccceEEEecCHHHH--HHHHHH------------------------HHhhccCcCHHHHHH--HHHHh-cCh
Confidence 999877665 489999887762 111000 000011222222221 12222 111
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
...+..+++.++.++.+.+.|.+. +.+..+ .++.+.|.-.+. +..++++.|.+++||.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p----~gg~f~~~~~~~----------------~~~~~~~~l~~~~gV~ 350 (393)
T TIGR03538 293 QHVRENRALYREKFAAVLEILGQV--LDLELP----DAGFYLWPKVPG----------------DDEAFARALYEEENVT 350 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CcccCC----CeeEEEEEECCC----------------CHHHHHHHHHHHCCEE
Confidence 224455556666677777777653 223222 345555555431 2457887776678999
Q ss_pred eecCCCCCchh-hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 455 ARGGCACAGPY-GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 455 v~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+.+|..|.... +.. ...+++||++.. ++++++..+++|+++
T Consensus 351 v~pg~~f~~~~~~~~----------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 351 VLPGRFLAREAEGVN----------------------PGEGRVRIALVA--PLEECVEAAERIRSF 392 (393)
T ss_pred EeCCccccccccCCC----------------------CCCCEEEEEecC--CHHHHHHHHHHHHHh
Confidence 99998764210 000 024799999974 678899888888754
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=198.87 Aligned_cols=310 Identities=16% Similarity=0.060 Sum_probs=205.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.|+.+.+++.+.+......|. . ...++|+.++++++.+++ +|++| +|+++++..++.++
T Consensus 33 ~p~~~~~a~~~~~~~~~~Y~~----------~-~~~~lr~~ia~~~~~~~~-~i~it-~Ga~~~l~~~~~~~-------- 91 (354)
T PRK06358 33 VPESLKQAITENLDKLVEYPD----------P-DYLELRKRIASFEQLDLE-NVILG-NGATELIFNIVKVT-------- 91 (354)
T ss_pred CCHHHHHHHHHHHHhhhcCCC----------c-cHHHHHHHHHHHhCCChh-hEEEC-CCHHHHHHHHHHHh--------
Confidence 367888888776532111111 1 145789999999999877 89998 89999999888765
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
.+ ++ |++..+.|+.+...++..|++++.++++.+ ..+| +++.+.+. .+++++++++|+|||
T Consensus 92 --------~~-~~--v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~-----~~~~~v~~~~P~NPt 154 (354)
T PRK06358 92 --------KP-KK--VLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK-----EEIDLVFLCNPNNPT 154 (354)
T ss_pred --------CC-Cc--EEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc-----cCCCEEEEeCCCCCC
Confidence 23 33 888888988888888889999999998753 3678 56655554 468999999999999
Q ss_pred ccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---ccc-CCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEe-ccccc
Q 043646 247 GIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KIN-LRSRNIDGYDAIFLATHKFLGGPG-TPGILLIS-KALYQ 317 (625)
Q Consensus 247 G~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id-~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~-~~~~~ 317 (625)
|.+.+ +++|.++|++||+++++|+++.--.. +.. +.......--+++.|++|.||.|+ .+|+++++ +.+.
T Consensus 155 G~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~- 233 (354)
T PRK06358 155 GQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA- 233 (354)
T ss_pred CCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHH-
Confidence 99987 67788889999999999999642111 011 111111112366779999998554 48999885 3441
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
..+.... ...+.+... +.+...++.+..-.+...+..+..++++.+.|.+
T Consensus 234 -~~~~~~~---------------------------~~~~~~~~~--q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 283 (354)
T PRK06358 234 -EKLLQMR---------------------------EPWSINTFA--DLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE 283 (354)
T ss_pred -HHHHHhC---------------------------CCCcchHHH--HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1110000 011112111 1111222111111244556666778889999988
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
++++.+..+. +.+.+.-.++ ..++.+.|.+ +||.+++|..+.+
T Consensus 284 ~~~~~~~~~~-----g~f~~~~~~~-----------------~~~~~~~l~~-~gI~v~~~~~f~~-------------- 326 (354)
T PRK06358 284 FKGIKVYKPS-----VNFIFFKLEK-----------------PIDLRKELLK-KGILIRSCSNYRG-------------- 326 (354)
T ss_pred CCCcEEcCCc-----ceEEEEEcCc-----------------hHHHHHHHHH-CCeEEEECCCCCC--------------
Confidence 8887776552 3343333321 3578888865 7999999876631
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
..++++||+++ +++++++|+++|+.++
T Consensus 327 -------------~~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 327 -------------LDENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred -------------CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 02489999998 8999999999998765
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=208.91 Aligned_cols=284 Identities=14% Similarity=0.059 Sum_probs=192.5
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.++++++++++|++++ +|++| +|++++|..++.++ +++| ++ |+++.++|+.+...++..|
T Consensus 60 ~~l~~~~a~~~g~~~~-~I~~~-~Gs~e~i~~~~~~~---------------~~~g~~~--vli~~P~y~~y~~~~~~~G 120 (351)
T PRK01688 60 KAVIENYAAYAGVKPE-QVLVS-RGADEGIELLIRAF---------------CEPGKDA--ILYCPPTYGMYSVSAETIG 120 (351)
T ss_pred HHHHHHHHHHhCCCHH-HEEEc-CCHHHHHHHHHHHh---------------cCCCCCE--EEEcCCCHHHHHHHHHHcC
Confidence 5688999999999887 89997 89999999999887 4676 54 8889899988887888899
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCcccc
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKIN 280 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id 280 (625)
++++.+++++++.+|++++++++. ++++|++++|+||||.+.+.++|.++++.. ++++++|+|+.--.....
T Consensus 121 ~~~~~v~~~~~~~~d~~~l~~~~~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s 194 (351)
T PRK01688 121 VEIRTVPTLDNWQLDLPAIADNLD------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQAS 194 (351)
T ss_pred CEEEEeecCCCCCCCHHHHHHhcc------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCC
Confidence 999999998778899999988763 689999999999999999988877777542 689999999542211111
Q ss_pred CCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 281 LRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 281 ~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
+..+ ....--+++.|++|++|.|+ .+|++++++++. +.+..... ....+
T Consensus 195 ~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i--~~l~~~~~---------------------------~~~v~ 245 (351)
T PRK01688 195 LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVI--NLLLKVIA---------------------------PYPLS 245 (351)
T ss_pred hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHH--HHHHhccC---------------------------CCCCC
Confidence 1110 00122356679999997443 379999888773 22211110 00111
Q ss_pred HHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 359 IVQMIRAALAFWVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
.... .++.+++ +..+ .+...+.....++++.+.|.++++++.+.+. .+++.+...+
T Consensus 246 ~~~~-~~a~~~L--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps----~~nfi~~~~~-------------- 304 (351)
T PRK01688 246 TPVA-DIAAQAL--SPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDS----ETNYILARFT-------------- 304 (351)
T ss_pred HHHH-HHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC----CCcEEEEEcC--------------
Confidence 1111 1222222 1112 2333445555678899999888777533342 2344333222
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
+..++.+.|.+ +||.++.+..+. + .++++|||++ +++|+++++++
T Consensus 305 ---~~~~l~~~L~~-~gi~vr~~~~~~--------~--------------------~~~~iRis~~---~~~e~~~l~~a 349 (351)
T PRK01688 305 ---ASSAVFKSLWD-QGIILRDQNKQP--------G--------------------LSNCLRITIG---TREECQRVIDA 349 (351)
T ss_pred ---CHHHHHHHHHH-CCeEEEECCCcC--------C--------------------CCCeEEEeCC---CHHHHHHHHHh
Confidence 24578888864 799999654321 1 1489999998 88999999998
Q ss_pred HH
Q 043646 516 LE 517 (625)
Q Consensus 516 L~ 517 (625)
|+
T Consensus 350 l~ 351 (351)
T PRK01688 350 LR 351 (351)
T ss_pred hC
Confidence 74
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=203.63 Aligned_cols=348 Identities=10% Similarity=0.069 Sum_probs=217.7
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal 153 (625)
..+.|+.+... ++|+.+.+++.+.+.. +....|....+..++.+.+.+++.+.+|.+ ++++|++| +|++.+|
T Consensus 31 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it-~G~~~al 105 (405)
T PRK09148 31 DIIDLGMGNPDLPTPQHIVDKLCETAQD----PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVAT-LGSKEGF 105 (405)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHcC----cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEc-CChHHHH
Confidence 34556554433 3456777777665531 111112222223455555666665555643 43368888 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
..++.++ +++||. |+++.+.|+.+...++..|++++.++++.++. +++++++++.. ..++
T Consensus 106 ~~~~~~l---------------~~~gd~--Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~--~~~~ 165 (405)
T PRK09148 106 ANMAQAI---------------TAPGDV--ILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRH--SIPK 165 (405)
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhh--cccc
Confidence 9998887 578885 99999999998888888999999999875432 34555555542 1257
Q ss_pred CeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCCCCCCC-
Q 043646 234 PMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~lggp~- 304 (625)
++++++++|+||||.+.+. ++|+++|++||+++++|++++.-. ....+.... ..+..+++.|++|.+|.|+
T Consensus 166 ~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl 245 (405)
T PRK09148 166 PIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW 245 (405)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcch
Confidence 8999999999999999886 678899999999999999965321 111111110 0123356789999998665
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIKKQ 383 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~~~ 383 (625)
.+|+++.++++. +.+... ......+.+.+.+. ++..++ .+ ..-.+..+++
T Consensus 246 R~G~~v~~~~~i--~~l~~~------------------------~~~~~~~~~~~~q~--~~~~~L-~~~~~~~~~~~~~ 296 (405)
T PRK09148 246 RMGFAVGNERLI--AALTRV------------------------KSYLDYGAFTPIQV--AATAAL-NGPQDCIAEMREL 296 (405)
T ss_pred heeeeeCCHHHH--HHHHHH------------------------HHHhccCCChHHHH--HHHHHH-hCcHHHHHHHHHH
Confidence 489999887762 222100 00011122222222 112222 11 1123455666
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+..++++.+.|.++ ++.+..+ .++.+.|.-.+... ..++..++++.|.++.||.+++|..|..
T Consensus 297 ~~~~r~~l~~~L~~~-~~~~~~p----~~g~f~~~~l~~~~-----------~~~~~~~~~~~ll~~~gV~v~pg~~f~~ 360 (405)
T PRK09148 297 YKKRRDVLVESFGRA-GWDIPPP----AASMFAWAPIPEAF-----------RHLGSLEFSKLLVEKADVAVAPGVGFGE 360 (405)
T ss_pred HHHHHHHHHHHHHHc-CCccCCC----CeeEEEEEECCCcc-----------CCCCHHHHHHHHHHhCCEEEeCchhhCC
Confidence 677788888888775 5554433 34666665554310 0123457877776668999999876531
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
. .++++||++. .+.++++..++.|.+++...
T Consensus 361 ~---------------------------~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~~ 391 (405)
T PRK09148 361 H---------------------------GDGYVRIALV--ENEQRIRQAARNIKRFLSSA 391 (405)
T ss_pred C---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 1 1489999997 46788888888888776543
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=208.31 Aligned_cols=294 Identities=17% Similarity=0.094 Sum_probs=199.5
Q ss_pred HHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 124 HEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 124 ~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
.++++.++++++. .++++|++| +|++++|..++.++ ++|||. |++..+.|+.+...++..
T Consensus 124 ~~lr~~ia~~~~~~~~~~~~Iiit-~G~~~al~~~~~~l---------------~~pgd~--Vlv~~P~y~~~~~~~~~~ 185 (431)
T PRK15481 124 PELHAWAARWLRDDCPVAFEIDLT-SGAIDAIERLLCAH---------------LLPGDS--VAVEDPCFLSSINMLRYA 185 (431)
T ss_pred HHHHHHHHHHHhhccCCcCeEEEe-cCcHHHHHHHHHHh---------------CCCCCE--EEEeCCCcHHHHHHHHHc
Confidence 3466666666652 233378888 89999999999887 578986 999999999999889999
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEe-cccCccccccCHH---HHHHHHHHc-CCEEEEeccCcCCC
Q 043646 202 LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS-ACSNVTGIYSDTR---SIARLLHQY-GGFACFDFAASGPY 276 (625)
Q Consensus 202 G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~-~~~n~TG~~~~l~---~I~~la~~~-g~~vivD~A~~~g~ 276 (625)
|++++.+++++++ +|+++|+++++ +++++++++ +++||||.+.+.+ +|.++|+++ ++++++|++++--.
T Consensus 186 g~~~~~v~~~~~g-~~~~~l~~~~~-----~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~ 259 (431)
T PRK15481 186 GFSASPVSVDAEG-MQPEKLERALA-----QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLS 259 (431)
T ss_pred CCeEEeeccCCCC-CCHHHHHHHHh-----cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhc
Confidence 9999999997665 89999999987 468888886 9999999999976 899999999 99999999865211
Q ss_pred c-c-ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 277 V-K-INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 277 ~-~-id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
. + ...-.. ...--+++.|++|.|+ |+ .+|+++.++++. ..+.... ....
T Consensus 260 ~~~~~~~~~~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~--~~~~~~~------------------------~~~~ 311 (431)
T PRK15481 260 SSPYHSVIPQ-TTQRWALIRSVSKALG-PDLRLAFVASDSATS--ARLRLRL------------------------NSGT 311 (431)
T ss_pred cCCCCCCCcC-CCCCEEEEeeeccccC-CCceeEEEeCCHHHH--HHHHHHH------------------------hccc
Confidence 0 0 111111 0122467789999999 64 489999887762 1111000 0000
Q ss_pred CCChhHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccc
Q 043646 354 GGTPQIVQMIRAALAFWVKEYI---GYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENM 430 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~~---g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~ 430 (625)
.+.+.+.+. ++..++ .+.. -.+..++..+..++++.+.|.+. ++++..| .++.+.|.-.+.
T Consensus 312 ~~~s~~~q~--a~~~~l-~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p----~gg~f~~~~l~~-------- 375 (431)
T PRK15481 312 QWVSHLLQD--LVYACL-TDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIPSP----GDGLNLWLPLDT-------- 375 (431)
T ss_pred cCCCHHHHH--HHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccC----CCeEEEEEECCC--------
Confidence 112222221 222222 2211 13345666667777888888775 5655444 346666655442
Q ss_pred cccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 431 KIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 431 ~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
+..++++.|. ++||.+++|..|..+ . ..+++||+++. .++++++
T Consensus 376 --------~~~~~~~~l~-~~gV~v~pg~~f~~~--~------------------------~~~~iRis~~~-~~~~~i~ 419 (431)
T PRK15481 376 --------DSQATALTLA-KSGWLVREGEAFGVS--A------------------------PSHGLRITLST-LNDAEIN 419 (431)
T ss_pred --------CHHHHHHHHH-HCCcEEecCCccccC--C------------------------CCCeEEEEcCC-CChHHHH
Confidence 1457888885 489999999876411 0 13689999975 4689999
Q ss_pred HHHHHHHHHHH
Q 043646 511 FILAALEFIAA 521 (625)
Q Consensus 511 ~ll~aL~~~~~ 521 (625)
.+++.|.+++.
T Consensus 420 ~~~~~l~~~~~ 430 (431)
T PRK15481 420 RLAADLHQALN 430 (431)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-20 Score=199.59 Aligned_cols=338 Identities=11% Similarity=0.042 Sum_probs=215.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|..+.+++.+.+... ....|....+...+.+.+.+++.+..|.. ++++|++| +|+.++|..++.++
T Consensus 47 ~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it-~G~~~al~~~~~~l------ 115 (403)
T PRK08636 47 TPQHIIDKLCESAQKP----KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVAT-MGSKEGYVHLVQAI------ 115 (403)
T ss_pred CCHHHHHHHHHHhcCC----ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEC-CChHHHHHHHHHHh------
Confidence 4566677766655321 11112222234456666777777666753 33269998 89999999999887
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHh--hhCCCCeEEEEecc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELY--KAAKRPMLGSFSAC 242 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~--~~~~~~~lv~~~~~ 242 (625)
+++||. |+++.+.|+.+...++..|++++.|+++ .+..+|++.+.+.+++. ....+++++++++|
T Consensus 116 ---------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P 184 (403)
T PRK08636 116 ---------TNPGDV--AIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFP 184 (403)
T ss_pred ---------CCCCCE--EEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCC
Confidence 578885 9999999999988888899999999985 34578887654433321 11247899999999
Q ss_pred cCccccccCH---HHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC-CCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 243 SNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI-DGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 243 ~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~-~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
+||||.+.+. ++|+++|++|++++++|++++.-. ....+..+.. ....+++.|++|.||.|+ .+|+++.++
T Consensus 185 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~ 264 (403)
T PRK08636 185 HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNK 264 (403)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCH
Confidence 9999999885 678889999999999999965221 1111222210 112244679999997665 489999887
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~l~ 392 (625)
++.. .+... ......+++.+.+.+.. ..+.. ....+.+++.....++.+.
T Consensus 265 ~li~--~~~~~------------------------~~~~~~~~~~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 315 (403)
T PRK08636 265 KLVG--ALKKI------------------------KSWLDYGMFTPIQVAAT---IALDGDQSCVEEIRETYRKRRDVLI 315 (403)
T ss_pred HHHH--HHHHH------------------------HHHhcccCChHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 7621 11100 00011233333333221 11111 1123445556666677788
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|... ++.+..+ .++.+.|.-.++.. ..++..+++..+.+++||.+.+|..|+..
T Consensus 316 ~~L~~~-~~~~~~p----~~g~~~~~~l~~~~-----------~~~~~~~l~~~ll~~~gV~v~pg~~f~~~-------- 371 (403)
T PRK08636 316 ESFANA-GWELQKP----RASMFVWAKIPEPA-----------RHLGSLEFSKQLLTEAKVAVSPGIGFGEY-------- 371 (403)
T ss_pred HHHHHC-CCcccCC----CcceEEEEECCCcc-----------CCCCHHHHHHHHHHhCCEEEecchhhCcC--------
Confidence 888775 5655444 34566665554210 01235677777666689999998766411
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ .++++++..++.|++++..
T Consensus 372 -------------------~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 372 -------------------GDEYVRIALI--ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred -------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 2489999997 5789999999999887754
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=204.34 Aligned_cols=320 Identities=15% Similarity=0.046 Sum_probs=208.3
Q ss_pred ceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+.... +++.+.+++.+.+......|. .-..++|+.++++++++++ +|+++ +|+++++..
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-----------~g~~~lr~~ia~~~~~~~~-~I~~~-~G~~~~l~~ 89 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPD-----------MGAVELRAALAEHLGVPPE-HVAVG-CGSVALCQQ 89 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CcHHHHHHHHHHHhCcCHH-HEEEC-CCHHHHHHH
Confidence 457777665443 566888888776532211221 1256789999999998766 79987 899998888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++..+ +++||+ |+++.+.+..+...++..|++++.++.++++.+|+++++++++ ++++
T Consensus 90 ~~~~~---------------~~~gd~--Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~-----~~~~ 147 (352)
T PRK03321 90 LVQAT---------------AGPGDE--VIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAIT-----DRTR 147 (352)
T ss_pred HHHHh---------------cCCCCE--EEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhc-----cCCC
Confidence 87766 578885 8888777777666677789999999998667899999999887 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
+|++++++||||.+.|.++|.++|+. +|+++++|+++..... +..+.......--+++.|++|.||.|+ .+|+
T Consensus 148 ~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 227 (352)
T PRK03321 148 LIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGY 227 (352)
T ss_pred EEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhh
Confidence 99999999999999999999999997 5999999999652111 011111100111255668999998554 4899
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
+++++++. +.+.... ...+.+..... ++.+.+.......+.+ ++....+
T Consensus 228 ~v~~~~~~--~~~~~~~---------------------------~~~~~s~~~q~-~a~~~l~~~~~~~~~~-~~~~~~r 276 (352)
T PRK03321 228 AVGHPEVI--AALRKVA---------------------------VPFSVNSLAQA-AAIASLAAEDELLERV-DAVVAER 276 (352)
T ss_pred hcCCHHHH--HHHHHhc---------------------------CCCCCCHHHHH-HHHHHhcCHHHHHHHH-HHHHHHH
Confidence 99987762 2221110 01122222211 1122221011112222 2233345
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.+. ++.+..+ . +.+.+...+. +..++.+.|. ++||.+++ |+
T Consensus 277 ~~~~~~L~~~-~~~~~~~----~-g~~i~i~l~~----------------~~~~~~~~l~-~~gI~v~~---~~------ 324 (352)
T PRK03321 277 DRVRAALRAA-GWTVPPS----Q-ANFVWLPLGE----------------RTADFAAAAA-EAGVVVRP---FA------ 324 (352)
T ss_pred HHHHHHHHHC-CCccCCC----C-CCEEEEeCCC----------------CHHHHHHHHH-HCCEEEEc---cC------
Confidence 5677777765 5544222 2 3333332221 2457888884 58999974 21
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+.++||+++ +.+++++++++|+++++
T Consensus 325 ------------------------~~~iRi~~~---~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 325 ------------------------GEGVRVTIG---APEENDAFLRAARAWRA 350 (352)
T ss_pred ------------------------CCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence 245999986 89999999999998754
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=202.27 Aligned_cols=340 Identities=15% Similarity=0.068 Sum_probs=213.6
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG---QADAIIFCGAGTTAA 152 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~---~~~~vift~sGttaa 152 (625)
..+.|..+... ++++.+.+++.+.+..... |....+..++.+.+.+++.+.+|.+ ++++|++| +|++.+
T Consensus 30 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it-~G~~~a 102 (396)
T PRK09147 30 PPISLSIGEPKHPTPAFIKDALAANLDGLAS------YPTTAGLPALREAIAAWLERRYGLPALDPATQVLPV-NGSREA 102 (396)
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHhhhhcC------CCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEEC-CChHHH
Confidence 45556554433 3467788887765532111 2112223456666666666666743 33378887 899999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCC---CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRD---EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLEL 227 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~---gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~ 227 (625)
|..++.++ +++ || .|+++.+.|+.+...++..|++++.||++++ +.+|++++++.+.
T Consensus 103 l~~~~~~l---------------~~~~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~- 164 (396)
T PRK09147 103 LFAFAQTV---------------IDRDGPGP--LVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW- 164 (396)
T ss_pred HHHHHHHH---------------cCCCCCCC--EEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh-
Confidence 99998887 467 55 4999999998888888889999999999753 4799999988876
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-----ccc-CC---CCCCC--CCcEEE
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-----KIN-LR---SRNID--GYDAIF 293 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-----~id-~~---~~~~~--~~D~v~ 293 (625)
++++++++++|+||||.+.+ +++|+++|++|++++++|++++.-.. +.. +. ..+.+ .--+++
T Consensus 165 ----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 240 (396)
T PRK09147 165 ----ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVF 240 (396)
T ss_pred ----hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEE
Confidence 47999999999999999986 56788888999999999999663211 110 10 11001 112777
Q ss_pred EcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHH
Q 043646 294 LATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~ 372 (625)
.|++|.++.|+ .+|+++.++++. +.+.... .....+.+.+.+. +++..+.
T Consensus 241 ~S~SK~~~~~GlRiG~~~~~~~l~--~~~~~~~------------------------~~~~~~~~~~~q~--a~~~~~~- 291 (396)
T PRK09147 241 HSLSKRSNVPGLRSGFVAGDAALL--KKFLLYR------------------------TYHGCAMPPAVQA--ASIAAWN- 291 (396)
T ss_pred eccccccCCccceeeeecCCHHHH--HHHHHHh------------------------hhcccCCCHHHHH--HHHHHhc-
Confidence 89999887665 489999887762 2111000 0000111122221 1122221
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 373 EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
...-....++..++.++.+.+.|.+. +.+..+ .++.+.|.-.+ ++..++++.|.+++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p----~~g~f~~~~~~----------------~~~~~~~~~ll~~~g 349 (396)
T PRK09147 292 DEAHVRENRALYREKFDAVTPILAPV--LDVQLP----DAGFYLWAKVP----------------GDDTEFARRLYADYN 349 (396)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCC----CeeEEEEEECC----------------CCHHHHHHHHHHhCC
Confidence 11123344555566666677777653 333222 34555555443 124567777766689
Q ss_pred eeeecCCCCCch-hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 453 IQARGGCACAGP-YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 453 I~v~~G~~~~~~-~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
|.+.+|..|+.. .+.. ...+++||+++. ++++++..++.|++++
T Consensus 350 v~v~pg~~f~~~~~~~~----------------------~~~~~iRi~~~~--~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 350 VTVLPGSYLAREAHGVN----------------------PGAGRVRIALVA--PLAECVEAAERIVDFC 394 (396)
T ss_pred EEEeCCccccccccCCC----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 999999876421 0000 024899999974 5788999998888765
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=203.10 Aligned_cols=344 Identities=12% Similarity=0.034 Sum_probs=215.8
Q ss_pred CceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCCh
Q 043646 76 RRLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAG 148 (625)
Q Consensus 76 ~~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sG 148 (625)
++++-|..+.. .++|+.+.+++.+.+... ....|....+..++.+.+.+++.+..| .+++ +|++| +|
T Consensus 31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G 104 (409)
T PLN02656 31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSN----KFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLD-DVFIT-SG 104 (409)
T ss_pred CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcC----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcc-cEEEe-CC
Confidence 45667766555 366789999888776431 111121112233444444444444434 3444 89998 78
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHH
Q 043646 149 TTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLE 226 (625)
Q Consensus 149 ttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~ 226 (625)
+++++..++.++ +++||+ |+++.+.|+.+....+..|++++.+++++ ++.+|+++|+++++
T Consensus 105 ~~~al~~~~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 105 CTQAIDVALSML---------------ARPGAN--ILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred hHHHHHHHHHHH---------------hCCCCe--EEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 999999988877 478886 99999999888777777899999999864 35799999999887
Q ss_pred HhhhCCCCeEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcCCCC
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLATHKF 299 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~hK~ 299 (625)
++++++++++|+||||.+. ++++|+++|+++|+++++|++++.-. ....+........-+++.|++|.
T Consensus 168 -----~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 242 (409)
T PLN02656 168 -----QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKR 242 (409)
T ss_pred -----cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchh
Confidence 5789999999999999996 47888999999999999999965211 11111111111223566799999
Q ss_pred CCCCC-CceEEEEec--------cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH
Q 043646 300 LGGPG-TPGILLISK--------ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW 370 (625)
Q Consensus 300 lggp~-g~G~l~v~~--------~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~ 370 (625)
|+.|+ .+|+++.++ ++. ..+. . ......+.+.+.+ .++..+
T Consensus 243 f~~pGlRiG~~i~~~~~~~~~~~~~~--~~~~------------------------~-~~~~~~~~s~~~q---~a~~~~ 292 (409)
T PLN02656 243 WIVPGWRLGWFVTTDPSGSFRDPKIV--ERIK------------------------K-YFDILGGPATFIQ---AAVPTI 292 (409)
T ss_pred ccCcceeEEEEEEeCcccccccHHHH--HHHH------------------------H-HHhhhcCCCHHHH---HHHHHH
Confidence 87775 499999853 221 1110 0 0000112222222 222222
Q ss_pred HHh--hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCccccccCCCCC-ChHHHHHH
Q 043646 371 VKE--YIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL-HGPFVATL 446 (625)
Q Consensus 371 ~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~ 446 (625)
+.+ ....+..+++.+..++.+.+.|..++++... .| .++.+.|...+... -..+ +..+++..
T Consensus 293 l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p----~gg~~~w~~l~~~~----------~~~~~~~~~~~~~ 358 (409)
T PLN02656 293 LEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKP----EGSMAVMVKLNLSL----------LEDISDDIDFCFK 358 (409)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCC----CeEEEEEEecchhh----------cCCCCCHHHHHHH
Confidence 211 1124455666667778888888877554322 22 34555555443100 0001 23344433
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+..+.||.+.+|..|+ .++++||+++. ++++++..++.|++++..
T Consensus 359 ~l~~~gV~v~pg~~fg-----------------------------~~~~iRi~~~~--~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 359 LAREESVIILPGTAVG-----------------------------LKNWLRITFAA--DPSSLEEALGRIKSFYLR 403 (409)
T ss_pred HHHhCCEEEecchhcC-----------------------------CCCeEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 4356899999987664 14899999984 789999999999887654
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=197.17 Aligned_cols=315 Identities=16% Similarity=0.069 Sum_probs=216.5
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
.++|+.|.+++.+.+.. +....|..+++..++...+++.+++++|.. ++++|++| .|+.++|...+.++
T Consensus 43 ~~~P~fv~ea~~~~~~~----~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT-~GA~~ai~~~~~~l---- 113 (420)
T KOG0257|consen 43 FPPPKFVTEAAKNAAKE----PSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVT-AGANEAISSALLGL---- 113 (420)
T ss_pred CCCcHHHHHHHHHHhcc----chhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEe-cCchHHHHHHHHHH----
Confidence 57889999999887743 222235566778889999999999988874 44589998 89999888666666
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--------CCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--------DNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--------~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
+++||+ |++-.+.+.++....+..|..++.|++. .++.+|.+.|+.+++ ++||+
T Consensus 114 -----------~~~GDe--Vii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t-----~kTk~ 175 (420)
T KOG0257|consen 114 -----------LNPGDE--VIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT-----EKTKA 175 (420)
T ss_pred -----------cCCCCE--EEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc-----CCccE
Confidence 689997 8888999999998999999999999987 257899999999999 79999
Q ss_pred EEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC----CCccccCCCC-CCCCCcEEEEcCCCCCCCCCC--c
Q 043646 237 GSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVKINLRSR-NIDGYDAIFLATHKFLGGPGT--P 306 (625)
Q Consensus 237 v~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~----g~~~id~~~~-~~~~~D~v~~S~hK~lggp~g--~ 306 (625)
|++++|+||||.+.+ |++|+++|++||+++|.|+++.. |...+.+..+ ++...-+-+.|+.|+|+ ..| +
T Consensus 176 Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~-~TGWrl 254 (420)
T KOG0257|consen 176 IILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFG-VTGWRL 254 (420)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceee-eeeeee
Confidence 999999999999976 78899999999999999999442 2211211111 11223455679999997 444 8
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHH--HhhcC---HHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWV--KEYIG---YEVI 380 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~--~~~~g---~~~i 380 (625)
|+++.++.++ ....+ +..++....+..++.+ .++++... .+..| ...+
T Consensus 255 GW~igp~~L~--~~~~~------------------------vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~ 308 (420)
T KOG0257|consen 255 GWAIGPKHLY--SALFP------------------------VHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITEL 308 (420)
T ss_pred eeeechHHhh--hhHHH------------------------HhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHH
Confidence 9999966662 22211 1223333333333322 22222211 11222 2235
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC--CCChHHHHHHhhhhcCeeeecC
Q 043646 381 KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK--PLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~--~l~~~~v~~~L~~~~gI~v~~G 458 (625)
.+..++.++.+.+.|.++ |+++.+|+ ++.+.+.-++... + -....+. .-+...++..|.++.|+.+-++
T Consensus 309 ~~~y~~krdil~k~L~~l-g~~v~~p~----gayyl~adfs~~~-~---~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~ 379 (420)
T KOG0257|consen 309 VKEYKEKRDILAKALEEL-GLKVTGPE----GAYYLWADFSLAK-S---WPFFEEILEKPDDFKFVRWLIKEGGVVVIPP 379 (420)
T ss_pred HHHHHHHHHHHHHHHHhc-CCccccCC----CceEEEEeccccc-c---CCcchhhccCCCceeeehhhhccCcEEEeCc
Confidence 666777799999999998 99999885 3555555544100 0 0000000 0122356788888999999999
Q ss_pred CCCCch
Q 043646 459 CACAGP 464 (625)
Q Consensus 459 ~~~~~~ 464 (625)
+.+...
T Consensus 380 saF~s~ 385 (420)
T KOG0257|consen 380 SAFGSR 385 (420)
T ss_pred hhcCCc
Confidence 988743
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=206.65 Aligned_cols=303 Identities=16% Similarity=0.139 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ- 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~- 200 (625)
..+++++.+++++|.+ + .+++ ++|+. ++..++.++ +++||+ |+++...|......+..
T Consensus 62 t~~~Le~~lA~l~G~~-~-al~~-~sG~~-Ai~~~l~al---------------~~~Gd~--Vv~~~~~y~~~~~~~~~~ 120 (386)
T PRK06767 62 TVKLFEERMAVLEGGE-E-ALAF-GSGMA-AISATLIGF---------------LKAGDH--IICSNGLYGCTYGFLEVL 120 (386)
T ss_pred chHHHHHHHHHHhCCC-c-EEEE-CCHHH-HHHHHHHHH---------------hCCCCE--EEEcCCcHHHHHHHHHHH
Confidence 3577999999999974 2 4555 47775 566666555 478885 88888888877655433
Q ss_pred ---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 201 ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 201 ---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
.|+++..++. .|+++++++++ +++++|++++++||||.+.|+++|.++||++|+++++|++++.++.
T Consensus 121 ~~~~gi~~~~~~~-----~d~~~l~~~i~-----~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 190 (386)
T PRK06767 121 EEKFMITHSFCDM-----ETEADIENKIR-----PNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL 190 (386)
T ss_pred HhhcCeEEEEeCC-----CCHHHHHHhhC-----cCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 3666666654 37899999887 5799999999999999999999999999999999999999987665
Q ss_pred cccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 278 KINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
..++. . ++|+++.|++|+++|++. .|+++.+++.. ..+... .+...|
T Consensus 191 ~~pl~-~---g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i--~~~~~~-------------------------~~~~~g 239 (386)
T PRK06767 191 QRPLE-L---GCDAVVHSATKYIGGHGDVVAGVTICKTRAL--AEKIRP-------------------------MRKDIG 239 (386)
T ss_pred CCchh-c---CCcEEEecCcceecCCCCceeEEEEeChHHH--HHHHHH-------------------------HHHHhC
Confidence 44432 2 789999999999998875 48888887762 111000 000111
Q ss_pred -C-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEE-eCCCC-------CCCcceEEEEeccCCCC
Q 043646 356 -T-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQV-LGNTS-------VKRQAILSFLVYSTTNS 425 (625)
Q Consensus 356 -t-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v-~~~~~-------~~~~~i~~f~~~~~~~~ 425 (625)
. .++.+ ++... .......+.++.++++.++.++|+++|+++. ..|.. ...+++++|.+....
T Consensus 240 ~~~~~~~a----~l~~~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~-- 311 (386)
T PRK06767 240 GIMAPFDA----WLLLR--GLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGK-- 311 (386)
T ss_pred CCCCHHHH----HHHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCH--
Confidence 1 11111 11111 1112344556677789999999999999874 43321 124678999874210
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~ 502 (625)
.....+.+.| +.+++.++-|...+. |.......+..+... ..|+.++.||||+|.
T Consensus 312 ------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~l~R~svGl 369 (386)
T PRK06767 312 ------------EETQAFINDL-HFITIAVSLGDTETLIQHPATMTHAAIPAELRQ---------EMGIYDNLIRLSVGL 369 (386)
T ss_pred ------------HHHHHHHHhC-CccEEecCCCCcCccccCCCccccccCCHHHHH---------hcCCCCCeEEEEecc
Confidence 1245678888 567888876654331 211111122221111 256778999999996
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 043646 503 YMSNEEFEFILAALEFIA 520 (625)
Q Consensus 503 ~~t~edid~ll~aL~~~~ 520 (625)
||.+.+++-|++.+
T Consensus 370 ----E~~~dl~~dl~~al 383 (386)
T PRK06767 370 ----ESWEDIVSDLEQAL 383 (386)
T ss_pred ----CCHHHHHHHHHHHH
Confidence 45556666555544
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-20 Score=197.95 Aligned_cols=340 Identities=12% Similarity=0.065 Sum_probs=211.4
Q ss_pred ceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal 153 (625)
..+.|..+.. .++|+.+.+++.+.+.....+.+ .|....+...+.+.+.+++.+.++ ++++ +|++| +|++.+|
T Consensus 34 ~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~--~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t-~G~~~al 109 (394)
T PRK06836 34 NVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLH--GYMPNAGYPEVREAIAESLNRRFGTPLTAD-HIVMT-CGAAGAL 109 (394)
T ss_pred CeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcc--cCCCCCCCHHHHHHHHHHHHHHhCCCCCcC-cEEEe-CChHHHH
Confidence 3444443332 24567888888776643211111 121111223333333444433333 3454 89998 7899999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~ 232 (625)
..++..+ +++||+ |+++.+.|..+...++..|++++.++++++ +.+|+++|+++++ +
T Consensus 110 ~~~~~~l---------------~~~gd~--Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~-----~ 167 (394)
T PRK06836 110 NVALKAI---------------LNPGDE--VIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAIT-----P 167 (394)
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcC-----c
Confidence 9988876 478885 888988998887777888999999999875 6899999999997 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHH------cCCEEEEeccCcCCCcc-ccCCC-CCCCCCcEEEEcCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQ------YGGFACFDFAASGPYVK-INLRS-RNIDGYDAIFLATHKFLG 301 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~------~g~~vivD~A~~~g~~~-id~~~-~~~~~~D~v~~S~hK~lg 301 (625)
++++|++++++||||.+.| +++|+++|++ ||+++++|+++..-... -.... .....-.+++.|++|.||
T Consensus 168 ~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 247 (394)
T PRK06836 168 KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLS 247 (394)
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhcc
Confidence 7999999999999999988 5667778888 89999999996521110 00000 000123577789999998
Q ss_pred CCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc--CCChhHHHHHHHHHHHHHHhhcCHH
Q 043646 302 GPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN--GGTPQIVQMIRAALAFWVKEYIGYE 378 (625)
Q Consensus 302 gp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~~~~~aal~~~~~~~~g~~ 378 (625)
.|+ .+|++++++.......+...... ..+.. ..++++. +.++..++.+. .
T Consensus 248 ~pGlRiG~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~---q~~~~~~l~~~--~- 300 (394)
T PRK06836 248 LPGERIGYIAVNPEMEDADDLVAALVF---------------------ANRILGFVNAPALM---QRVVAKCLDAT--V- 300 (394)
T ss_pred CcceeeEEEecCHHHhhhHHHHHHHHH---------------------HhhccccccCCHHH---HHHHHHHhCCh--H-
Confidence 665 58999987665210000000000 00000 1122222 22222222221 1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 379 VIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 379 ~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
...+.++.++.+.+.|.++ ++++..+. ++.+.|...+. .+..++++.| .++||.+++|
T Consensus 301 -~~~~~~~~r~~l~~~L~~~-g~~~~~~~----gg~~~~~~~~~---------------~~~~~~~~~l-~~~gv~v~~g 358 (394)
T PRK06836 301 -DVSIYKRNRDLLYDGLTEL-GFECVKPQ----GAFYLFPKSPE---------------EDDVAFCEKA-KKHNLLLVPG 358 (394)
T ss_pred -HHHHHHHHHHHHHHHHHhC-CCEeecCC----ceEEEEEeCCC---------------CCHHHHHHHH-HhCCEEEECc
Confidence 1233444567777888776 67765542 35555544332 1355777777 4589999988
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..|. .++++||+++ .++++++..++.|+++++.
T Consensus 359 ~~f~-----------------------------~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 359 SGFG-----------------------------CPGYFRLSYC--VDTETIERSLPAFEKLAKE 391 (394)
T ss_pred hhcC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 7653 1389999997 4789999999999988753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=204.52 Aligned_cols=340 Identities=13% Similarity=0.070 Sum_probs=208.3
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
..+|++++...+.+..+.+.... ... .+.+++.......++++.+++++|++.. +++ ++|+.+. ..+
T Consensus 30 ~pi~~~~~~~~~~~~~~~~~~~~-------~~~--~~~y~r~~~p~~~~Le~~lA~l~G~~~~--~~~-~sG~~Ai-~~~ 96 (398)
T PRK07504 30 EALFLTQGFVYDTAEAAEARFKG-------EDP--GFIYSRYSNPTVDMFEKRMCALEGAEDA--RAT-ASGMAAV-TAA 96 (398)
T ss_pred CCeECCCCccCCCHHHHHHHhcc-------CcC--CceeecCCCchHHHHHHHHHHHhCCCee--eEe-cCHHHHH-HHH
Confidence 46999999988877665543211 111 1222222233467899999999998754 444 4777654 443
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+.++ +++||+ |+++...|.+....+. ..|++++.++ .+|+++++++++ +
T Consensus 97 l~~~---------------l~~Gd~--Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~-----~ 149 (398)
T PRK07504 97 ILCQ---------------VKAGDH--VVAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVR-----P 149 (398)
T ss_pred HHHH---------------hCCCCE--EEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcC-----c
Confidence 3333 578886 8888888887655443 4588888885 268999999987 6
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc-eEEE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP-GILL 310 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G~l~ 310 (625)
+|++|++++++||||.+.|+++|.++|+++|+++++|++++.+.....+ .+ ++|+++.|+||++++++ .+ |+++
T Consensus 150 ~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~-~~---gaDivv~S~sK~l~g~g~~~GG~vv 225 (398)
T PRK07504 150 NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL-EL---GAHIVVYSATKHIDGQGRCLGGVVL 225 (398)
T ss_pred CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch-hh---CCCEEEeeccccccCCccceEEEEE
Confidence 8999999999999999999999999999999999999998876543222 22 78999999999998775 24 4565
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC-ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG-TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g-t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
.+++... +.+. ......| .++... +++... .........++..+++.
T Consensus 226 ~~~~~i~-~~~~--------------------------~~~~~~g~~~s~~~---A~~~l~--~L~tl~~R~~~~~~na~ 273 (398)
T PRK07504 226 SDKAWIE-EHLQ--------------------------DYFRHTGPSLSPFN---AWTLLK--GLETLPVRVRQQTESAA 273 (398)
T ss_pred eCcHHHH-HHHH--------------------------HHHHHhCCCCCHHH---HHHHHh--ccchHHHHHHHHHHHHH
Confidence 5555411 0000 0000112 111111 111111 12223444555667889
Q ss_pred HHHHhhCCCCcEE-EeCCCC--C-----------CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeee
Q 043646 390 SALGRILPNQNIQ-VLGNTS--V-----------KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA 455 (625)
Q Consensus 390 ~l~~~L~~l~gv~-v~~~~~--~-----------~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v 455 (625)
.+.+.|.+.|++. |+.|.- . ..+++++|.+..+. -....+++.| +.+.+.+
T Consensus 274 ~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--------------~~~~~~~~~l-~~~~~~~ 338 (398)
T PRK07504 274 AIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGK--------------EAAFRFLNAL-KIVRISN 338 (398)
T ss_pred HHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCH--------------HHHHHHHHhC-Ccceecc
Confidence 9999999888774 544421 1 12678888884211 0123455655 4455555
Q ss_pred ecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 456 RGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 456 ~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.-|...+. |.......+..+... ..|+.++.||||+|.- |.+.+++-|+..+
T Consensus 339 slG~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~liR~svGlE----~~~dl~~dl~~al 393 (398)
T PRK07504 339 NLGDAKSLITHPATTTHKNLSPEARA---------ELGISEGFLRLSAGLE----DTDDLIEDLAAAL 393 (398)
T ss_pred cCCCCCeeeeCCCCCCcccCCHHHHH---------hcCCCCCeEEEEeccC----CHHHHHHHHHHHH
Confidence 54443321 111111222221111 2567789999999974 4445555444444
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=195.65 Aligned_cols=336 Identities=11% Similarity=0.047 Sum_probs=213.9
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|+.+.+++.+.+... ....|....+..++.+.+.+++.+.+|.. +++++++| +|+++++..++..+
T Consensus 43 ~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t-~G~~~~l~~~~~~~------ 111 (395)
T PRK08175 43 TPPHIVEKLCEVAQRP----DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVT-IGSKEGLAHLMLAT------ 111 (395)
T ss_pred CCHHHHHHHHHHHhCC----CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEc-cCcHHHHHHHHHHh------
Confidence 4556777776655321 11112222234556666666666665653 33368888 89999999888776
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
++|||+ |+++.+.|+.....++..|++++.++++.++. +.++|++++++ ..++++++++++|+|||
T Consensus 112 ---------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~--~~~~~~~v~i~~p~NPt 177 (395)
T PRK08175 112 ---------LDHGDT--VLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD-FFNELERAIRE--SYPKPKMMILGFPSNPT 177 (395)
T ss_pred ---------CCCCCE--EEEcCCCCcchHHHHHHcCCeEEEEecccCCC-cHHHHHHHHhh--ccCCceEEEEeCCCCCC
Confidence 578886 99999999998888888999999999876432 57888888863 12478999999999999
Q ss_pred ccccCH---HHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEEEcCCCCCCCCC-CceEEEEeccccc
Q 043646 247 GIYSDT---RSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIFLATHKFLGGPG-TPGILLISKALYQ 317 (625)
Q Consensus 247 G~~~~l---~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~ 317 (625)
|.+.+. ++|+++|++||+++|+|++++.-. ....+..+. ..+..+++.|++|.||.|+ .+|+++.++++.+
T Consensus 178 G~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~ 257 (395)
T PRK08175 178 AQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVS 257 (395)
T ss_pred CCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHH
Confidence 999887 689999999999999999965311 111111110 0123356789999998675 3899998877622
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+... ......++....+.+ +..++.......+.++++.++.++++.+.|..
T Consensus 258 --~~~~~------------------------~~~~~~~~~~~~q~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 309 (395)
T PRK08175 258 --ALARI------------------------KSYHDYGTFTPLQVA--AIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE 309 (395)
T ss_pred --HHHHH------------------------HhhcccCCCcHHHHH--HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21100 000112222222221 12222101111345566666677888888887
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
+ ++.+..+ .++.+.+...+... ..++..+++..|.+++||.+.+|..|...
T Consensus 310 ~-~~~~~~p----~~g~~i~i~l~~~~-----------~~~~~~~~~~~l~~~~gv~v~p~~~f~~~------------- 360 (395)
T PRK08175 310 A-GWMVEMP----KASMYVWAKIPEPY-----------AAMGSLEFAKKLLNEAKVCVSPGIGFGDY------------- 360 (395)
T ss_pred c-CCcccCC----CEEEEEEEECCccc-----------CCCCHHHHHHHHHHhCCEEEeCchhhCcC-------------
Confidence 6 5665443 23444444443210 01235678877766789999988765311
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||++. .+++.+...++.|.+++..
T Consensus 361 --------------~~~~lRis~~--~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 361 --------------GDTHVRFALI--ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred --------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 2478999996 4778888888888877753
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=192.17 Aligned_cols=351 Identities=12% Similarity=0.043 Sum_probs=226.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhh
Q 043646 91 RYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRD 170 (625)
Q Consensus 91 ~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (625)
...++++.+.+..-+-++ .....++++++++++|+.. .+.++|||. +|.+.+.+++
T Consensus 15 ~~e~~~v~~vl~sg~i~~-----------G~~v~~FE~~~ae~~G~k~---ava~~sgT~-AL~laL~al~--------- 70 (374)
T COG0399 15 EEELAAVQEVLKSGWLTG-----------GPFVRRFEQAFAEYLGVKY---AVAVSSGTA-ALHLALLALA--------- 70 (374)
T ss_pred hHHHHHHHHHHHcCCeec-----------ChHHHHHHHHHHHHhCCCe---EEEecChHH-HHHHHHHhcC---------
Confidence 456666666664321111 2346778899999999973 455545554 5888878774
Q ss_pred hhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc
Q 043646 171 KLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249 (625)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~ 249 (625)
+.|||+ ||+++.++.+...++...|+++++|++|+ ++.+|++.++++|+ ++||+|+..|.. |..
T Consensus 71 -----ig~GDe--VI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt-----~~tKAIipVhl~---G~~ 135 (374)
T COG0399 71 -----IGPGDE--VIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAIT-----PRTKAIIPVHLA---GQP 135 (374)
T ss_pred -----CCCCCE--EEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcc-----cCCeEEEEehhc---cCC
Confidence 679996 99999999999999999999999999997 58999999999999 689999888754 999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCc
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGG 329 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg 329 (625)
.|+++|.++|++||++||.|+||+.|...-+-+.+....+-+++|.+.|.++...| |+++.+++-. .+.++.+...|-
T Consensus 136 ~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEG-Gav~tnd~el-a~k~~~lr~hG~ 213 (374)
T COG0399 136 CDMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEG-GAVVTNDEEL-AEKARSLRNHGL 213 (374)
T ss_pred CCHHHHHHHHHHcCCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCc-eEEEeCCHHH-HHHHHHHHHhCc
Confidence 99999999999999999999999999876655444332334444556699975544 8888876542 111211111111
Q ss_pred eEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC
Q 043646 330 TVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV 409 (625)
Q Consensus 330 ~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~ 409 (625)
.... ...| .. .+.|...=+.-+++|+-+. +....+.+.++.+.+++++.+.|++++++.+......
T Consensus 214 ~~~~-------~~~y-~~----~~~G~N~rm~~iqAAigl~--QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~ 279 (374)
T COG0399 214 SRDA-------VFKY-LH----EELGYNYRLTEIQAAIGLA--QLERLDEINERRREIAQIYAEALKGLPGITLPPEPDG 279 (374)
T ss_pred CCCc-------cccc-ee----eecccccCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCC
Confidence 1000 0011 11 1123221112223333333 2233567777788889999999999887665544322
Q ss_pred CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc----hhhHhh-hc--CChhhHHHHHH
Q 043646 410 KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG----PYGHTL-LA--FDQTRSLEIRS 482 (625)
Q Consensus 410 ~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~----~~~~~~-l~--~~~~~~~~~~~ 482 (625)
...+..-+.+.-+. . +.+...+.+.|.+ .||.. +..+-. ++...+ .. ...+.+.++
T Consensus 280 ~~~~~~~~~i~~~~-----------~-~~~R~~l~~~L~~-~gi~~--~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~-- 342 (374)
T COG0399 280 AVHAWHLYTILVDE-----------E-GISRDALMESLKE-AGVGA--VVYFRPLHLQPAYRQLGYFPEGDLPNAEDL-- 342 (374)
T ss_pred ceeeeeeeEEEecC-----------C-CCCHHHHHHHHHh-CCCCc--eEEeeccccchhhhcccccccCCCchHHHH--
Confidence 22223333332211 1 4567889999966 58772 222221 111111 00 112223322
Q ss_pred HHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 483 AIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 483 ~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+++.++..++++|+++++++|++++..
T Consensus 343 ---------~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 343 ---------SERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred ---------hhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999988753
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-21 Score=202.42 Aligned_cols=298 Identities=21% Similarity=0.179 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhC------CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 123 VHEASNYIKRCLG------GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 123 ~~~~~~~ia~~~g------~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
..++++.++++++ .+++..|+++ +|+.+++..+...+. .++|+. |+++.+.|+.+..
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~i~~~-~G~~~~~~~~~~~~~--------------~~~~~~--vlv~~P~y~~~~~ 108 (363)
T PF00155_consen 46 YPELREAIADFLGRRYGVPVDPEANILVT-SGAQAALFLLLRLLK--------------INPGDT--VLVPDPCYPSYIE 108 (363)
T ss_dssp HHHHHHHHHHHHHHHHTHHTTGGEGEEEE-SHHHHHHHHHHHHHH--------------SSTTSE--EEEEESSSTHHHH
T ss_pred hHHHHHHHHHHhhhccCcccccceEEEEe-cccccchhhhhhccc--------------cccccc--ceecCCccccccc
Confidence 4456777777777 3333267777 899999998887762 257775 9999999999999
Q ss_pred HHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHH---HHHHHHcCCEEEEec
Q 043646 197 SWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSI---ARLLHQYGGFACFDF 270 (625)
Q Consensus 197 ~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I---~~la~~~g~~vivD~ 270 (625)
.++..|++++.++++ .++.+|+++|++.+++..... ++++|++++++||||...+.+++ +++|++||+++++|+
T Consensus 109 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De 188 (363)
T PF00155_consen 109 AARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDE 188 (363)
T ss_dssp HHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeee
Confidence 999999999999975 467899999999998532222 57899999999999999886554 555999999999999
Q ss_pred cCcCCCcc-ccC----CCCCCCCC-cEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 271 AASGPYVK-INL----RSRNIDGY-DAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 271 A~~~g~~~-id~----~~~~~~~~-D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
+++..... .+. .... ... .+++.|++|.||.|+ .+|++++++++.+ .+..
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~--~l~~-------------------- 245 (363)
T PF00155_consen 189 AYSDLIFGDPDFGPIRSLLD-EDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIE--RLRR-------------------- 245 (363)
T ss_dssp TTTTGBSSSSHTHHHHGHHT-TTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHH--HHHH--------------------
T ss_pred ceeccccCCCccCccccccc-ccccceeeeeccccccccccccccccchhhhhh--hhhh--------------------
Confidence 97754332 111 1111 133 377789999998775 5899999877622 1100
Q ss_pred cccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccC
Q 043646 344 YLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~ 422 (625)
..... ..++..+. +...+.-......-.+.+.++.+..++++.+.|.+. ++.+..+. .+++.+...+.
T Consensus 246 ----~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~----~~~~~~~~~~~ 314 (363)
T PF00155_consen 246 ----FQRSG--LSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPE----AGFFLWVRLDP 314 (363)
T ss_dssp ----HHHHT--TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS----BSSEEEEEESH
T ss_pred ----ccccc--cccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeecc----CccEEEEEccc
Confidence 00111 11222221 111111110000134567777888888999999777 88888663 46777766542
Q ss_pred CCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC
Q 043646 423 TNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~ 502 (625)
. +..++.+.|.+++||.+.+|..++. ++++||++ .
T Consensus 315 ~---------------~~~~l~~~L~~~~gi~v~pg~~~~~-----------------------------~~~iRi~~-a 349 (363)
T PF00155_consen 315 N---------------DAEELAQELLEEYGILVRPGSYFGV-----------------------------PGYIRISL-A 349 (363)
T ss_dssp H---------------HHHHHHHHHHHHHTEEEEEGGGGTS-----------------------------TTEEEEEG-G
T ss_pred c---------------hHHHHHHHHHHhCCEEEEecCCCCC-----------------------------CCEEEEEe-c
Confidence 1 2457888888877999998876651 48999999 6
Q ss_pred CCCHHHHHHHHHHH
Q 043646 503 YMSNEEFEFILAAL 516 (625)
Q Consensus 503 ~~t~edid~ll~aL 516 (625)
..+++++++++++|
T Consensus 350 ~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 350 SHSEEDLEEALERL 363 (363)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhC
Confidence 67999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=197.21 Aligned_cols=333 Identities=15% Similarity=0.067 Sum_probs=223.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
.+.+.++..+.+.++.. +.+.+..-.+.....+++++.|++++|.+. .++|. +|..+++..+......... ..
T Consensus 118 ~p~v~~a~~~ai~~yG~--g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~--all~s-SGy~AN~~~i~aL~~~~~~--~~ 190 (476)
T PLN02955 118 HPTISNAAANAAKEYGM--GPKGSALICGYTTYHRLLESSLADLKKKED--CLVCP-TGFAANMAAMVAIGSVASL--LA 190 (476)
T ss_pred CHHHHHHHHHHHHHcCC--CCCCcCccccChHHHHHHHHHHHHHHCCCc--EEEEC-ChHHHHHHHHHHHhhcccc--cc
Confidence 45677777777766532 222333444567788899999999999863 46665 8999977776543210000 00
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHc----CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQS----LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~----G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
.. .....++...|++....|.|...+++.. +++++.++.+ |+++|+++|++. .++.++|++..+.++
T Consensus 191 ~~--~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~--~~~~~~Vv~EgV~Sm 261 (476)
T PLN02955 191 AS--GKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSC--KMKRKVVVTDSLFSM 261 (476)
T ss_pred cc--ccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhC--CCCceEEEEeCCCCC
Confidence 00 0001233446999999999999999876 5777777754 899999999742 234679999999999
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCC----CC-CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRS----RN-IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS 320 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~----~~-~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~ 320 (625)
.|.+.|+++|.++|++||+++++|+||+.|.....-+. .+ ....|+++.++.|.||..+ |+++++++..+ .
T Consensus 262 dGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G--Gfi~gs~~~~~--~ 337 (476)
T PLN02955 262 DGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG--GFIACSKKWKQ--L 337 (476)
T ss_pred CCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC--ceeecHHHHHH--H
Confidence 99999999999999999999999999997654331110 00 1267899999999998655 77888876522 1
Q ss_pred CCCcccCCceEEeeccccccccccccchhhhhcCCC---hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 321 SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT---PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
+... + ..+..+| |+..+.+.+++..... + ...+++.+++.+++++.+
T Consensus 338 l~~~--~----------------------~~~ifStalpp~~aaa~laal~l~~~---~-~~~r~~L~~n~~~fr~~~-- 387 (476)
T PLN02955 338 IQSR--G----------------------RSFIFSTAIPVPMAAAAYAAVVVARK---E-KWRRKAIWERVKEFKALS-- 387 (476)
T ss_pred HHHh--C----------------------CCCeecccccHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHhc--
Confidence 1100 0 1111222 2333444455555422 2 235667777788887742
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
|+.+ ..||+.+.+.... ....+.+.|.+ .||.+.+...+++|.+
T Consensus 388 --G~~~-------~sPI~pI~ig~~~---------------~a~~~~~~L~~-~Gi~v~~i~yPtVP~g----------- 431 (476)
T PLN02955 388 --GVDI-------SSPIISLVVGNQE---------------KALKASRYLLK-SGFHVMAIRPPTVPPN----------- 431 (476)
T ss_pred --CCCC-------CCCEEEEEeCCHH---------------HHHHHHHHHHH-CCCEEEEECCCCCCCC-----------
Confidence 3322 2578877775432 23467888866 6999998777765532
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...+||++...+|++||++++++|.++....
T Consensus 432 ---------------~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~ 462 (476)
T PLN02955 432 ---------------SCRLRVTLSAAHTTEDVKKLITALSSCLDFD 462 (476)
T ss_pred ---------------CceEEEeeCCCCCHHHHHHHHHHHHHHHhhh
Confidence 2569999999999999999999999886553
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-20 Score=198.58 Aligned_cols=329 Identities=15% Similarity=0.054 Sum_probs=208.3
Q ss_pred eEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~ 154 (625)
.+.|+.+.. .++|+.+.+++.+.+.....+.. .|.. .+...+.+.+.+++.+..| ++++ +|++| +|++++|.
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~--~Y~~-~g~~~lr~aia~~~~~~~~~~~~~~-~I~it-~G~~~~l~ 102 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLN--RYPD-RDAVALRADLAAYLTAQTGVGLTVE-NVWAA-NGSNEILQ 102 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhc--cCCC-CchHHHHHHHHHHhhhhccCCCChh-hEEEC-CCHHHHHH
Confidence 355555443 35677888888876532111111 1211 1223334444444444334 4455 88887 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||. |++..+.|+.+....+..|++++.++.++++.+|++++++++.+ .++
T Consensus 103 ~~~~~~---------------~~~gd~--v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~----~~~ 161 (368)
T PRK03317 103 QLLQAF---------------GGPGRT--ALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAE----HRP 161 (368)
T ss_pred HHHHHh---------------cCCCCE--EEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc----cCC
Confidence 999887 478886 88888999888877888899988888776678999999999874 468
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC-cc-ccCCCCCCCCCc-EEEEcCCCCCCCCC-CceEEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY-VK-INLRSRNIDGYD-AIFLATHKFLGGPG-TPGILL 310 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~-~~-id~~~~~~~~~D-~v~~S~hK~lggp~-g~G~l~ 310 (625)
+++++++++||||.+.+.+++.++++..++++|+|++++.-. .. ...........+ +++.|++|.+|.|+ .+|+++
T Consensus 162 ~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~ 241 (368)
T PRK03317 162 DVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLA 241 (368)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhh
Confidence 899999999999999999999999999999999999976321 11 000000000123 55669999998554 479999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
.++++. +.+.... ...+.+.+.+. ++.+.+ ..........++....+++
T Consensus 242 ~~~~~~--~~l~~~~--------------------------~~~~~s~~~~~--a~~~~l-~~~~~~~~~~~~~~~~~~~ 290 (368)
T PRK03317 242 AAPAVV--DALRLVR--------------------------LPYHLSAVTQA--AARAAL-RHADELLASVAALRAERDR 290 (368)
T ss_pred CCHHHH--HHHHhcC--------------------------CCCCCCHHHHH--HHHHHh-hCHHHHHHHHHHHHHHHHH
Confidence 887772 2221100 00111222221 111222 1111122223344555677
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|.+. ++.+..+. ++.+.|.... +..++.+.|.+ +||.+++. +
T Consensus 291 l~~~L~~~-g~~~~~~~----~~~~~~~~~~-----------------~~~~~~~~l~~-~Gv~v~~~---~-------- 336 (368)
T PRK03317 291 VVAWLREL-GLRVAPSD----ANFVLFGRFA-----------------DRHAVWQGLLD-RGVLIRDV---G-------- 336 (368)
T ss_pred HHHHHHHC-CCEeCCCC----CcEEEEeccC-----------------CHHHHHHHHHH-CCEEEEeC---C--------
Confidence 77888776 67665442 3333332211 24578888855 79999742 1
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +.+++++++++|++++.
T Consensus 337 ---------------------~~~~iRi~~~---~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 337 ---------------------IPGWLRVTIG---TPEENDAFLAALAEVLA 363 (368)
T ss_pred ---------------------CCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 1489999987 78999999999998764
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=197.21 Aligned_cols=344 Identities=16% Similarity=0.109 Sum_probs=225.0
Q ss_pred HHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcE-EEeCChHHHHHHHHHHHhcccccchhhhh
Q 043646 93 IEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAI-IFCGAGTTAAIKRLQEVMGITVPSIMRDK 171 (625)
Q Consensus 93 v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~v-ift~sGttaal~~l~~~l~~~~~~~~~~~ 171 (625)
..+++.+.+. +. ++.+..+.+++.++++.++++++++.+..+ +++ ++.|.++..++..+
T Consensus 19 ~~~~~~~~~~---~~-----~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~-GsGT~a~Eaa~~nl----------- 78 (374)
T TIGR01365 19 SIEELKNAPL---GR-----SHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVP-ASDTGAVEMALWSM----------- 78 (374)
T ss_pred hHHHHhhhhc---cc-----CcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEC-CchHHHHHHHHHHc-----------
Confidence 5556655443 22 235678899999999999999998544345 556 55666677776665
Q ss_pred hhhcc-CCCCceEEEEcCCCCchhH---HHHHHcCC-eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 172 LITSL-RDEERWVVFLGPYEHHSNL---LSWRQSLA-EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 172 ~~~~l-~~gd~~~Vlv~~~~h~s~~---~~~~~~G~-~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
+ ++|++ |++.. .++.. ...+..|+ ++..+..+.+..+|+++++. . +.|+++|..+.|
T Consensus 79 ----~~~~g~~--vLv~g--~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~--------~~v~~vhnETST 140 (374)
T TIGR01365 79 ----LGCRGVD--VLAWE--SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K--------NDVVFTWNGTTS 140 (374)
T ss_pred ----CCCCCCe--EEEEC--HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C--------CCEEEecCCCch
Confidence 4 36665 55532 33332 34556798 58888877777889998872 1 126799999999
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCC--Cc
Q 043646 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSP--PS 324 (625)
Q Consensus 247 G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~--p~ 324 (625)
|+..|+++|+..+ ++++++||+++++|..++++. ++|+++++.+|+|++|+|+++++++++.. +... +.
T Consensus 141 Gv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d-----~iDv~~tgsQK~L~~ppGls~v~vs~~Al--~~~~~~~~ 211 (374)
T TIGR01365 141 GVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYH-----KLDVVTFSWQKVLGGEGAHGMLILSPRAV--ARLESYTP 211 (374)
T ss_pred heecccccccccc--CCCcEEEEccchhcCCCCChh-----HCcEEEEechhccCCCCceEEEEECHHHH--HHHhhcCC
Confidence 9999998776433 589999999999999999987 47999999999999999999999999984 2221 11
Q ss_pred ccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~ 402 (625)
++.+.. +.. +... ..++.+........||++..+.. .++.++. +..|++.+.+|.+++++.+++.+.+++.+.
T Consensus 212 y~~~~~--~~~-~~~~-~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~-~egGle~~~~Rh~~~a~~l~~~l~~lg~l~ 286 (374)
T TIGR01365 212 AWPLPK--IFR-LTKG-GKLNKKIFEGSTINTPSMLCVEDWLDALKWAE-SIGGLKPLIARADDNLAVLEAFVAKNNWIH 286 (374)
T ss_pred CCCChh--hhc-cccc-cchhhhhhcCCCCCChHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 100000 000 0000 00011111223456777766643 3343332 224899999999999999999999985477
Q ss_pred EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC-hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 403 VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH-GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 403 v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~-~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
++......+++.++....+....+ .+......+ ..++.+.|.+ +||.+.+|....
T Consensus 287 ~~~~~~~~rS~tvt~v~~~~~~~~----~~~~~~~~~~~~~~~~~l~~-~gi~i~~G~~~~------------------- 342 (374)
T TIGR01365 287 FLAETPEIRSNTSVCLKVVDPAID----ALDEDAQADFAKELISTLEK-EGVAYDIGSYRD------------------- 342 (374)
T ss_pred cCCCChhhcCCCeEEEEeCCcccc----ccccchhhHHHHHHHHHHHH-CCEEEecccccc-------------------
Confidence 776422345564444333221000 000000111 3578888855 699987664221
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+..+||+.....+.+|++.++++|..++++
T Consensus 343 ----------~~~~fRIg~~G~i~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 343 ----------APSGLRIWCGATVEKSDLECLCPWLDWAFAL 373 (374)
T ss_pred ----------CCCceEEecCCcCCHHHHHHHHHHHHHHHhc
Confidence 2477999998889999999999999988654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-20 Score=196.52 Aligned_cols=356 Identities=16% Similarity=0.144 Sum_probs=225.6
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHH-HHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHh
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRM-TKMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~-~~~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l 160 (625)
....+.|++++...+...| +.|+.- |+.|... .++..-+.++.+++||++.++ +|-.- ||+.+++..+.. +
T Consensus 158 N~~S~av~~algS~ltnkYaEG~pG~R-yy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~A-L 234 (586)
T PLN02271 158 NFVCRAVMEALGSHLTNKYSEGMPGAR-YYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTG-L 234 (586)
T ss_pred ccCCHHHHHHhcCcccccCCCCCCCCc-CCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHH-h
Confidence 3456678888777665544 344443 3334333 456667788899999987621 45555 788887666543 3
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---------HHcCCeEEEEe--cC-CCCCCCHHHHHHHHHHh
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---------RQSLAEVVEIG--LD-DNGLLDIEALRSQLELY 228 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---------~~~G~~vv~v~--~~-~~~~ld~~~L~~~l~~~ 228 (625)
++|||+ |+..+.+|....... ...|..+..++ ++ .++.+|.++|++.+..
T Consensus 235 ---------------l~PGD~--IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~- 296 (586)
T PLN02271 235 ---------------LLPGDR--IMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD- 296 (586)
T ss_pred ---------------cCCCCE--EEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh-
Confidence 589996 888888777765432 22455444444 65 4789999999995543
Q ss_pred hhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceE
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
.+|++|++.+..++ ...|+++|.++|+++|+++++|.||..|.+..++..-...++|+++++.||||.||.| |+
T Consensus 297 ---~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~ 370 (586)
T PLN02271 297 ---FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GI 370 (586)
T ss_pred ---cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eE
Confidence 68999999888888 6789999999999999999999999999998776533334789999999999999999 99
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchh----hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE----ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~----~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
++++++. .....+...+++. ......+...+. -.+..|+.+.. +++.+.++............+++
T Consensus 371 I~~r~~~--~~~~~g~~gs~s~-------~~~~~d~~~kI~~aVfPglqgGphn~~-IAalAvalkea~~~efk~Ya~QV 440 (586)
T PLN02271 371 IFYRKGP--KLRKQGMLLSHGD-------DNSHYDFEEKINFAVFPSLQGGPHNNH-IAALAIALKQVATPEYKAYMQQV 440 (586)
T ss_pred EEecccc--cccccCCcccccc-------ccccHHHHHHhhcccCCccccChhHHH-HHHHHHHHHHHhChHHHHHHHHH
Confidence 8888765 2222222222221 000011111000 13444443322 33333333211222345667777
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
..+++.|.+.|.+. |+++++.-. ....+.+.+ +..++++..+.+.| ++.||.+..-.-+.
T Consensus 441 v~NAkaLA~~L~~~-G~~vv~ggT--dnHlvLvDl--------------~~~g~~G~~ae~~L-e~~~I~~Nkn~iP~-- 500 (586)
T PLN02271 441 KKNAQALASALLRR-KCRLVTGGT--DNHLLLWDL--------------TTLGLTGKNYEKVC-EMCHITLNKTAIFG-- 500 (586)
T ss_pred HHHHHHHHHHHHHC-CCeEeeCCC--CcceeeecC--------------cccCCCHHHHHHHH-HHcCeEeccccCCC--
Confidence 78888888888775 888876421 112222222 12356676676666 67899875322211
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHH
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAA 521 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~ 521 (625)
.. ....++.+||..... ..++|++.+.+.|.+++.
T Consensus 501 -d~---------------------~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 501 -DN---------------------GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred -CC---------------------CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 00 001357799987544 357999999999998876
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=195.63 Aligned_cols=333 Identities=14% Similarity=0.082 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
...+++++++++++|.+ ++++| +|++++|..++.+++ ++|||+ |++++++|.++..++..
T Consensus 31 ~~~~~~e~~la~~~g~~---~~v~~-~sgt~aL~~~l~al~--------------~~pGd~--Viv~~~t~~~~~~~~~~ 90 (376)
T TIGR02379 31 PFSRRCETWLENRTGTK---KALLT-PSCTAALEMAALLLD--------------IQPGDE--VIMPSYTFVSTANAFVL 90 (376)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHcC--------------CCCcCE--EEECCCCcHHHHHHHHH
Confidence 35677889999998874 68888 677778888877763 578986 99999999999989999
Q ss_pred cCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc
Q 043646 201 SLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279 (625)
Q Consensus 201 ~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i 279 (625)
.|++++.++++++ ..+|+++++++++ +++++|+ ++|++|...|+++|.++|++||+++|+|+||+.+.. .
T Consensus 91 ~G~~~v~vd~d~~~~~~d~~~le~~i~-----~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~-~ 161 (376)
T TIGR02379 91 RGAKIVFVDIRPDTMNIDETLIESAIT-----HRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST-Y 161 (376)
T ss_pred cCCEEEEEecCCCcCCCCHHHHHHhcC-----cCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc-c
Confidence 9999999999875 5799999999987 5789886 456789999999999999999999999999998764 2
Q ss_pred cCCCCCCCCCcEEEEcCCC--CCC-CCCCceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 280 NLRSRNIDGYDAIFLATHK--FLG-GPGTPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK--~lg-gp~g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
+-+..+. ..|+.++|+|+ .+. |+.| |++++++ ++ .+.+++....|....... +.......+......++.+
T Consensus 162 ~~~~~g~-~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~--~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~g~n~~~~ 236 (376)
T TIGR02379 162 KGRALGS-IGHLGTFSFHETKNYTSGGEG-GALLINDQAF--IERAEIIREKGTNRSQFF-RGEVDKYTWRDIGSSYLPS 236 (376)
T ss_pred CCcccCC-CCCEEEEeCCCCCcCcccCCc-eEEEECCHHH--HHHHHHHHHhCCCCcccc-ccCCCcceeeeecccCCcc
Confidence 3223211 23777888764 443 2343 7777764 44 223333332221100000 0000000000011111111
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC--c-EEEeCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ--N-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~--g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
.+. +++-.. +....+.+.++.++++++..+.|..++ + +++....+........|.+.-..
T Consensus 237 --~~~----Aa~g~~--qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------- 299 (376)
T TIGR02379 237 --ELQ----AAYLWA--QLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKD--------- 299 (376)
T ss_pred --HHH----HHHHHH--HHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECC---------
Confidence 122 222211 112245566666777888888887764 2 33322111111122223332111
Q ss_pred cCCCCCChHHHHHHhhhhcCeeeecCCCCCc--hhhHhhh--cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 433 ERNKPLHGPFVATLFNDLFGIQARGGCACAG--PYGHTLL--AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 433 ~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l--~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
..+..++.+.|.+ +||.++.+..+.. |....+. .-+.+.++++ ....+.+.++..+|++|
T Consensus 300 ----~~~r~~l~~~L~~-~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~-----------~~~~l~LP~~~~l~~~~ 363 (376)
T TIGR02379 300 ----EDDRNELIKYLKE-QEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKE-----------SERLVRLPLYYGLSKED 363 (376)
T ss_pred ----cCCHHHHHHHHHH-CCCCccccCcCCCcchhHHhhCCCCCCChHHHHH-----------HhceEEccCCCCCCHHH
Confidence 1246789999955 7999885543221 1100010 0011222222 24679999999999999
Q ss_pred HHHHHHHHHHHH
Q 043646 509 FEFILAALEFIA 520 (625)
Q Consensus 509 id~ll~aL~~~~ 520 (625)
+++++++|++++
T Consensus 364 ~~~i~~~i~~~~ 375 (376)
T TIGR02379 364 QARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHHh
Confidence 999999999764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=203.57 Aligned_cols=304 Identities=14% Similarity=0.171 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-- 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (625)
...++++++++++.|.+. .++|+ +|+ +++..+.. + +++||+ |+++...|.++...+
T Consensus 133 pt~~aLE~~lA~leg~e~--ai~~~-SG~-aAi~~il~-l---------------l~~GD~--VI~~~~~y~~t~~ll~~ 190 (464)
T PLN02509 133 PTRDALESLLAKLDKADR--AFCFT-SGM-AALSAVTH-L---------------IKNGEE--IVAGDDVYGGSDRLLSQ 190 (464)
T ss_pred HHHHHHHHHHHHHhCCCE--EEEeC-cHH-HHHHHHHH-H---------------hCCCCE--EEEcCCchhhHHHHHHH
Confidence 467889999999998642 35554 665 56766554 3 478996 889999998876443
Q ss_pred --HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 199 --RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 199 --~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
...|++++.++. .|+++++++++ +++++|++++++||+|.+.|+++|+++||+||+++++|+|++.++
T Consensus 191 ~l~~~G~~v~~vd~-----~d~e~l~~ai~-----~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~ 260 (464)
T PLN02509 191 VVPRSGVVVKRVNT-----TNLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_pred HHHHCCeEEEEeCC-----CCHHHHHHhCC-----cCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 356999888864 37899998887 689999999999999999999999999999999999999998887
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
....+. . ++|++++|++||++|+++ .|+++++++.. ...+.. .+...
T Consensus 261 ~~~pl~-~---gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l-~~~~~~--------------------------~~~~~ 309 (464)
T PLN02509 261 LSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGEKL-AKEVYF--------------------------LQNSE 309 (464)
T ss_pred cCChhh-c---CCcEEEecCcccccCCCccceeEEEeccHHH-HHHHHH--------------------------HHHhc
Confidence 543332 2 789999999999998876 57777765531 000000 00011
Q ss_pred CC--hhHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCC--C-----------CCCcceEEE
Q 043646 355 GT--PQIVQ-MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNT--S-----------VKRQAILSF 417 (625)
Q Consensus 355 gt--~~~~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~--~-----------~~~~~i~~f 417 (625)
|+ .+..+ ++..+++ -.+.+.++..+++.++.+.|++.|.| +|+.|. + ..-+++++|
T Consensus 310 g~~l~p~~A~l~lr~L~-------tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf 382 (464)
T PLN02509 310 GSGLAPFDCWLCLRGIK-------TMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSF 382 (464)
T ss_pred CCCcCHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEE
Confidence 11 11111 1111121 23455667777899999999999887 455442 0 123678888
Q ss_pred EeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 418 LVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
.+ .+.. ....+++.| +.+.+.+.-|...+. |.......+..+.-. ..|+.++
T Consensus 383 ~~-~~~~--------------~~~~f~~~l-~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~---------~~Gi~~~ 437 (464)
T PLN02509 383 IT-GSVA--------------LSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVRE---------ARGLTED 437 (464)
T ss_pred Ee-CCHH--------------HHHHHHHcC-CcceEcccCCCCCceeeCCcccccccCCHHHHH---------hcCCCCC
Confidence 77 2210 123455555 445555554443221 211111222221111 2567789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.||||+|. ||++.|++-|++.++.+
T Consensus 438 liRlSvGl----E~~~DLi~Dl~~Al~~~ 462 (464)
T PLN02509 438 LVRISAGI----EDVDDLISDLDIAFRTG 462 (464)
T ss_pred eEEEEecc----CCHHHHHHHHHHHHccc
Confidence 99999996 56777777777766543
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=201.12 Aligned_cols=307 Identities=16% Similarity=0.132 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-- 197 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-- 197 (625)
....+++++.+++++|.+. .++++ +|+. ++..++.++ +++||+ |+++...|.+....
T Consensus 62 ~p~~~~le~~lA~l~g~~~--av~~~-sG~~-Ai~~al~al---------------~~~Gd~--Vl~~~~~y~~t~~~~~ 120 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAED--ARGFA-SGMA-AISSTVLSF---------------VEPGDR--IVAVRHVYPDAFRLFE 120 (389)
T ss_pred ChhHHHHHHHHHHHhCCCc--EEEEC-CHHH-HHHHHHHHH---------------hCCCCE--EEEeCCCchHHHHHHH
Confidence 3457889999999999863 46664 7775 566555554 578986 88888888876543
Q ss_pred --HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 198 --WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 198 --~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
....|++++.++.+ |++++++++. ++++|++++++|+++.+.|+++|+++||++|+++++|++++.+
T Consensus 121 ~~~~~~G~~v~~vd~~-----d~~~l~~~i~------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 121 TILKRMGVEVDYVDGR-----DEEAVAKALP------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred HHHHHcCceEEEeCCC-----CHHHHHHhcc------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 34469999988754 7888888763 5899999999999999999999999999999999999998876
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
.....+ .+ ++|++++|++|+++||++ .|+++.++++. +.+.... ....
T Consensus 190 ~~~~p~-~~---g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~--~~l~~~~------------------------~~~~ 239 (389)
T PRK05968 190 VFQRPI-TL---GVDLVIHSASKYLGGHSDTVAGVVAGSKEHI--ARINAEA------------------------YPYL 239 (389)
T ss_pred hccCch-hc---CCcEEEeeccccccCCCCeEEEEEEECHHHH--HHHHHHH------------------------HHhC
Confidence 532222 22 789999999999998865 57777777652 2211100 0000
Q ss_pred CCCh-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeC-CCC--------CCCcceEEEEeccCC
Q 043646 354 GGTP-QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG-NTS--------VKRQAILSFLVYSTT 423 (625)
Q Consensus 354 ~gt~-~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~-~~~--------~~~~~i~~f~~~~~~ 423 (625)
.+.. ++.+. +.. ..........++..+.++++.+.|+++|+++.+. |.- ...+++++|.+..+
T Consensus 240 g~~~~~~~A~----~~l--~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~- 312 (389)
T PRK05968 240 GAKLSPFEAW----LLL--RGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREG- 312 (389)
T ss_pred CCCCChHHHH----HHH--cccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCH-
Confidence 1111 11111 111 1222344455555666999999999999885443 310 12456888887421
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc--hhhHhhhcC-ChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG--PYGHTLLAF-DQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l~~-~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
.+...+++.| +.+++.++-|..|+- |....+... ..+.. ...|+.++.+|+|+
T Consensus 313 --------------~~~~~f~~~L-~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~---------~~~gi~~~liR~Sv 368 (389)
T PRK05968 313 --------------IDVRAFADAL-KLFRLGVSWGGHESLVVPAEVVLQQKAQPNSA---------ARFGVSPRSVRLHV 368 (389)
T ss_pred --------------HHHHHHHHhC-CccEEecCCCCCCceeeeCcccccccCCHHHH---------HhcCCCCCeEEEEe
Confidence 2356788888 568899998888762 211110110 01111 11356679999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 043646 501 PYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 501 ~~~~t~edid~ll~aL~~~ 519 (625)
|+.++++=++.+-++|+.+
T Consensus 369 GlE~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 369 GLEGTEALWADLEQALAAA 387 (389)
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 9987766667776666643
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=193.63 Aligned_cols=329 Identities=13% Similarity=-0.026 Sum_probs=204.9
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEeCCh
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--------GGQADAIIFCGAG 148 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--------~~~~~~vift~sG 148 (625)
.+.|+.+... ++|+.+.+++.+.+.... +. . .|.. .+ ..++|++|+++++ ++++ +|++| +|
T Consensus 30 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~Y~~-~G----~~~Lr~aia~~~~~~~~~~~~v~~~-~I~it-~G 99 (374)
T PRK02610 30 LDRLDTNEFPYDLPPDLKQKLAWLYQQGI-ES-N-RYPD-GG----HEALKQAIAEYVNESAAGSSQITPA-NISVG-NG 99 (374)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhcc-cc-c-CCCC-Cc----hHHHHHHHHHHhCccccccCCCCHH-HEEEc-CC
Confidence 5566655544 466788888877653210 00 0 1111 11 2446667777766 5555 89998 89
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHH
Q 043646 149 TTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLEL 227 (625)
Q Consensus 149 ttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~ 227 (625)
++++|..++.++ +.+|+. .|+++.+.|+.+...++..|++++.++++. +..+|+++|++++++
T Consensus 100 a~~al~~~~~~~---------------~~~g~~-~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 163 (374)
T PRK02610 100 SDELIRSLLIAT---------------CLGGEG-SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ 163 (374)
T ss_pred hHHHHHHHHHHH---------------cCCCCC-eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence 999998776655 345652 489999999999888899999999999876 468999999998863
Q ss_pred hhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-C
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g 305 (625)
. ...+++++++++++||||.+.+.+++.++++- +++++|+|+++.--.....+.......--+++.|++|.||.|+ .
T Consensus 164 ~-~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlR 242 (374)
T PRK02610 164 T-QNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHR 242 (374)
T ss_pred h-cCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccc
Confidence 1 11378999999999999999998776666532 4899999999652111101111110011256779999998675 4
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcC-HHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIG-YEVIKKQE 384 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g-~~~i~~~~ 384 (625)
+|+++.++++. +.+.... ...+.+.+.+.+ +...+ .+... .+.+...
T Consensus 243 iG~~v~~~~l~--~~l~~~~--------------------------~~~~~~~~~q~a--~~~~l-~~~~~~~~~~~~~- 290 (374)
T PRK02610 243 VGYAIGHPELI--AVLEKVR--------------------------LPYNLPSFSQLA--AQLAL-EHRQELLAAIPEI- 290 (374)
T ss_pred eeeeecCHHHH--HHHHHhc--------------------------CCCCCCHHHHHH--HHHHh-cCHHHHHHHHHHH-
Confidence 89999887762 2221100 001122222221 11111 11111 2223323
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
.+.++.+.+.|+.++++.+. + ..+.+.|.-.+. .++..++++.| .++||.++.+
T Consensus 291 ~~~r~~l~~~L~~~~~~~~~-p----~~g~f~~~~l~~--------------~~~~~~~~~~l-~~~gi~v~~~------ 344 (374)
T PRK02610 291 LQERDRLYQALQELPQLRVW-P----SAANFLYLRLSQ--------------DAALAALHQAL-KAQGTLVRHT------ 344 (374)
T ss_pred HHHHHHHHHHHHhCCCcEeC-C----CcceEEEEeCCC--------------CCCHHHHHHHH-HHCCEEEEeC------
Confidence 23356677778777777654 3 234554444332 13456788887 4589999731
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||+++ +.+++++++++|++++..
T Consensus 345 ----------------------------~~~lRls~~---~~~~~~~~l~~l~~~l~~ 371 (374)
T PRK02610 345 ----------------------------GGGLRITIG---TPEENQRTLERLQAALTQ 371 (374)
T ss_pred ----------------------------CCeEEEeCC---CHHHHHHHHHHHHHHHhh
Confidence 378999997 568899999999988754
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-20 Score=195.18 Aligned_cols=343 Identities=12% Similarity=0.064 Sum_probs=213.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhh
Q 043646 91 RYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRD 170 (625)
Q Consensus 91 ~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (625)
+.+.+++.+.+.++..+... +...+.......++++++++++|.+ + .++|+ +|+++++..+.. +
T Consensus 15 ~~~~~~~~~a~~~~g~~~~~--sr~~yg~~~~~~~LE~~lA~~~g~e-~-al~~~-sG~~a~~~~i~~-l---------- 78 (392)
T PLN03227 15 PTLRQTALESLSHYGCGSCG--PRGFYGTIDAHLELEQCMAEFLGTE-S-AILYS-DGASTTSSTVAA-F---------- 78 (392)
T ss_pred HHHHHHHHHHHHHhCCCCcc--cccccCChHHHHHHHHHHHHHhCCC-c-EEEec-CcHHHHHHHHHH-h----------
Confidence 35666666666554322222 1111233447889999999999986 3 67886 899998855544 3
Q ss_pred hhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh---------hCCCCeEEEEec
Q 043646 171 KLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK---------AAKRPMLGSFSA 241 (625)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~---------~~~~~~lv~~~~ 241 (625)
+++||. |+++...|.++...++..+++++.++.+ |++++++.+.... ..+++++|+++.
T Consensus 79 -----~~~GD~--Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~ 146 (392)
T PLN03227 79 -----AKRGDL--LVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG 146 (392)
T ss_pred -----CCCCCE--EEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence 478985 9999999999998888888888877754 4555555443211 113689999999
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc---------cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI---------NLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i---------d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
+.|++|.+.|+++|.++|++||+++++|++|++|...- ++.+ ..++|++++|++|.+| |.| |+++.+
T Consensus 147 v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p--~~~~Div~~slsk~~g-~~g-g~v~~~ 222 (392)
T PLN03227 147 LYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKP--MVHAEIVTFSLENAFG-SVG-GMTVGS 222 (392)
T ss_pred CcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCC--CCCceEEEeechhhhh-ccC-cEEecC
Confidence 99999999999999999999999999999998664321 1221 1367999999999987 554 777778
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
+++.. .+... +.+ ..+....+++... ..+++.... . .+.+.++.+++.+++
T Consensus 223 ~~~~~--~~~~~--~~~--------------------~~~~~~~~p~~~~aa~~al~~~~---~-~~~~~~~l~~~~~~l 274 (392)
T PLN03227 223 EEVVD--HQRLS--GSG--------------------YCFSASAPPFLAKADATATAGEL---A-GPQLLNRLHDSIANL 274 (392)
T ss_pred HHHHH--HHHHh--CcC--------------------ccccCCCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHH
Confidence 77631 11110 000 0011112333222 222332221 1 245677788889999
Q ss_pred HHhhCCCCcEEEeCCC-------CCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 392 LGRILPNQNIQVLGNT-------SVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~-------~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
++.|.+. +...+... ....++++.+.+.+... . . ......-...+++.+.+ +||.++....+.
T Consensus 275 ~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~-~----~-~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~-- 344 (392)
T PLN03227 275 YSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSDQEA-T----R-RTDETLILDQIAHHSLS-EGVAVVSTGGHV-- 344 (392)
T ss_pred HHHHHhc-CCccccccccccccCCCCCCCEEEEEeCCHHH-h----h-hhhhhhHHHHHHHHHHH-CCCEEEeccccc--
Confidence 9988642 22111100 01245677776633110 0 0 00000012367777755 699886321110
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
... +.-+++..+|++++..+|++|+++++++|++++...
T Consensus 345 -~~~-------------------~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 345 -KKF-------------------LQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred -CCc-------------------CCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 011246789999999999999999999999998764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=198.09 Aligned_cols=308 Identities=13% Similarity=0.076 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
......+++.++++.|. + .++++ +|+++++..++.++ +++||. |+++.+.|.+....+.
T Consensus 52 npt~~~Le~~lA~leg~--e-~ivvt-~gg~~Ai~~~l~al---------------l~~Gd~--Il~~~~~y~~~~~~~~ 110 (388)
T PRK08861 52 NPNRGLLEQTLSELESG--K-GAVVT-NCGTSALNLWVSAL---------------LGPDDL--IVAPHDCYGGTYRLFN 110 (388)
T ss_pred CchHHHHHHHHHHHhCC--C-eEEEE-CCHHHHHHHHHHHH---------------cCCCCE--EEEcCCchHHHHHHHH
Confidence 34466799999999995 2 67887 67888898888876 578885 8888888887655442
Q ss_pred ----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 200 ----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 200 ----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
..|++++.++. .|+++++++++ ++|++|++++|+||||.+.|+++|+++|+++|+++++|++++.+
T Consensus 111 ~~~~~~gi~v~~vd~-----~d~e~l~~~i~-----~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 111 TRANKGDFKVQFVDQ-----SDAAALDAALA-----KKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred HHHhcCCeEEEEECC-----CCHHHHHHhcC-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccc
Confidence 24678777753 48899999887 58999999999999999999999999999999999999999877
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
....++. + ++|+++.|.|||++|+.+ .|+++.+++.. .+.++ ..+..
T Consensus 181 ~~~~pl~-~---GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~-~~~~~--------------------------~~~~~ 229 (388)
T PRK08861 181 VLQKPLE-L---GADFVIHSTTKYINGHSDVIGGVLITKTKEH-AEELA--------------------------WWGNC 229 (388)
T ss_pred ccCCCcc-c---CCCEEEeecceeccCCCcceeEEEEecHHHH-HHHHH--------------------------HHHhc
Confidence 5443332 2 899999999999999875 46666654321 11110 01111
Q ss_pred CCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEE
Q 043646 354 GGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFL 418 (625)
Q Consensus 354 ~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~ 418 (625)
.|. .+.... . +++........+.++..+.+..+.++|++.|.|. |+.|.- ..-+++++|.
T Consensus 230 ~G~~~~p~~a---~--l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~ 304 (388)
T PRK08861 230 IGATGTPFDS---Y--MTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFE 304 (388)
T ss_pred cCCCCChHHH---H--HHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEE
Confidence 122 111111 0 1111222344445566667888999999888874 554420 1246788888
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
+..+. + ....+++.| +.+.+.+.-|...+. |.......+..+.-. ..|+.++.
T Consensus 305 ~~~~~--~------------~~~~f~~~l-~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~~gi~~~l 360 (388)
T PRK08861 305 FAGSF--E------------QLKVFVKAL-ALFSLAESLGGVESLICHPASMTHRAMGEEALA---------EAGVSQQL 360 (388)
T ss_pred eCCCH--H------------HHHHHHhcC-CcceEccCCCCCcceeeCCCcccccccCHHHHH---------hcCCCCCe
Confidence 74211 0 022344545 344444444432210 111111122211111 25677899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 043646 496 TRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~ 518 (625)
||||+|.-..++=++.|-++|+.
T Consensus 361 iRlsvGlE~~~dli~Dl~~al~~ 383 (388)
T PRK08861 361 LRLSVGLEDAQDLIADLDQAFAK 383 (388)
T ss_pred EEEEeCcCCHHHHHHHHHHHHHH
Confidence 99999974443334444444443
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-20 Score=195.17 Aligned_cols=331 Identities=14% Similarity=0.064 Sum_probs=204.1
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..+.|+.+... +.++.+.+++.+....... |....+..++.+.+.+++++.+|. +++ +|++| +|++++
T Consensus 24 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~------Y~~~~G~~~lr~aia~~l~~~~g~~~~~~-~I~it-~G~~~a 95 (374)
T PRK05839 24 YKGLDLTIGEPQFETPKFIQDALKNNAHLLNK------YPKSAGEESLREAQRGFFKRRFKIELKEN-ELIPT-FGTREV 95 (374)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHhhccCC------CCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEe-cCcHHH
Confidence 356666654433 3467777777664422111 111122345666777777777774 454 89998 899999
Q ss_pred HHHHHHHhcccccchhhhhhhhcc-CCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSL-RDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYK 229 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~ 229 (625)
|..++.++. . ++|| .|+++.+.|+.+...++..|++++.++++.+ ..+|+.+. .+
T Consensus 96 l~~~~~~~~--------------~~~~gd--~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~---- 153 (374)
T PRK05839 96 LFNFPQFVL--------------FDKQNP--TIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL---- 153 (374)
T ss_pred HHHHHHHHh--------------cCCCCC--EEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hh----
Confidence 988877651 1 3566 4999999999998888999999999999753 34554332 22
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCccccCCCC-C------CC--CCcEEEEcCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKINLRSR-N------ID--GYDAIFLATH 297 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~-~------~~--~~D~v~~S~h 297 (625)
.++++|++++|+||||.+.+ +++|+++|+++|+++++|++++--+..-..... . .. .--+++.|++
T Consensus 154 --~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfS 231 (374)
T PRK05839 154 --QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSIS 231 (374)
T ss_pred --ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccc
Confidence 36899999999999999977 466778889999999999996531110000000 0 00 1226677999
Q ss_pred CCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcC
Q 043646 298 KFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIG 376 (625)
Q Consensus 298 K~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g 376 (625)
|.|+.|+ .+|+++.++++. ..+... ......+++.+.+.+ +...+ ....-
T Consensus 232 K~~~~~GlRiG~ii~~~~~~--~~~~~~------------------------~~~~~~~~~~~~q~~--~~~~l-~~~~~ 282 (374)
T PRK05839 232 KRSSAPGLRSGFIAGDASIL--KKYKAY------------------------RTYLGCASPLPLQKA--AAVAW-LDDEH 282 (374)
T ss_pred cccCCccceeEEEecCHHHH--HHHHHH------------------------HhhcCCCCChHHHHH--HHHHh-ccchH
Confidence 9987675 489999887762 111000 000011223332321 11122 12222
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee
Q 043646 377 YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR 456 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~ 456 (625)
.+.++++.++.++.+.+.|. +. .+ .++.+.+.-.++ ..++++.|.+++||.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~l~----~~--~p----~gg~fi~~~~~~-----------------~~~~~~~l~~~~gi~v~ 335 (374)
T PRK05839 283 AEFFRNIYAKNLKLAREILG----IT--IP----PATFYVWLPVDN-----------------DEEFTKKLYQNEGIKVL 335 (374)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CC--CC----CeeEEEEEeCCC-----------------hHHHHHHHHHHCCEEEe
Confidence 34455555555666665542 22 12 234444443321 34677888666899999
Q ss_pred cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 457 GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 457 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+|..|+.+ +..++++||+++. +++++...++.|+++++
T Consensus 336 pg~~f~~~-------------------------~~~~~~iRis~~~--~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 336 PGSFLGRN-------------------------GIGKGYVRIALVY--DTPKLEKALEIIKTYLE 373 (374)
T ss_pred CchhhCCC-------------------------CCCCCeEEEEecC--CHHHHHHHHHHHHHHhh
Confidence 98765411 1125899999973 68999999999988764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-19 Score=192.69 Aligned_cols=404 Identities=14% Similarity=0.064 Sum_probs=239.6
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh
Q 043646 36 CSEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV 115 (625)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~ 115 (625)
+..++...++....+.+...+.+++.-. ..+.-..|. .+.|..+-.... .+.+++.+.+.. +. . .|..
T Consensus 9 ~~~r~~~v~~~~~~~~~~~~~~l~~~g~---~~~~L~~g~---p~~D~~tds~t~-a~~~a~~~a~~~--g~--~-~Y~~ 76 (460)
T PRK13238 9 EPFRIKMVEPIRLTTREERERALAEAGY---NPFLLKSED---VFIDLLTDSGTG-AMSDRQWAAMMR--GD--E-AYAG 76 (460)
T ss_pred cceeeceeccccccCHHHHHHHHHHcCC---CEEeCCCCC---CCCCCCCCCCch-hhhHHHHHHHHh--CC--c-ccCC
Confidence 4455555556666777777777765432 123333332 234433322111 345555444421 11 0 1211
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
+ .-..++++.++++++.. .+++| +|+++++..++.++ ++||| |+++.+.|.++.
T Consensus 77 ~----~g~~~Lreaia~~~~~~---~vv~t-~ggt~A~~~~~~al---------------l~pGD---Vii~~p~~~~~~ 130 (460)
T PRK13238 77 S----RSYYRLEDAVKDIFGYP---YTIPT-HQGRAAEQILFPVL---------------IKKGD---VVPSNYHFDTTR 130 (460)
T ss_pred C----CCHHHHHHHHHHHhCCC---cEEEC-CCHHHHHHHHHHHh---------------CCCCC---EEccCCcccchH
Confidence 1 12456888999999874 68888 67777788887776 68998 667777777776
Q ss_pred HHHHHcCCeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc-cccC---HHHHHHHHHH
Q 043646 196 LSWRQSLAEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG-IYSD---TRSIARLLHQ 261 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG-~~~~---l~~I~~la~~ 261 (625)
..+...|++++.+++++ .|.+|+++|++++++. ..+++++|++++++|+|| .+.+ +++|.++|++
T Consensus 131 ~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~-~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~ 209 (460)
T PRK13238 131 AHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEV-GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKK 209 (460)
T ss_pred HHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhc-CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 66778899999999853 2459999999999841 113699999999999998 6655 6789999999
Q ss_pred cCCEEEEeccCcCC-----------CccccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEec-cccccCCCCCccc
Q 043646 262 YGGFACFDFAASGP-----------YVKINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISK-ALYQLGSSPPSTC 326 (625)
Q Consensus 262 ~g~~vivD~A~~~g-----------~~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~-~~~~l~~~~p~~~ 326 (625)
||+++++|+|+... +....+..+ -....|++++|++|.+.+|.| |+++.++ ++. ..++....
T Consensus 210 ~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~--~~~~~~~~ 286 (460)
T PRK13238 210 YGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLF--TECRTLCI 286 (460)
T ss_pred cCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHH--HHhhhccc
Confidence 99999999987542 222222111 012579999999999888886 8888885 452 22222211
Q ss_pred CCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCC
Q 043646 327 GGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGN 406 (625)
Q Consensus 327 ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~ 406 (625)
.. +.....|..+... .+|++..+.+....+.+..+.. .++++.+.|.+. |+.+..|
T Consensus 287 ~~--------------------~g~~t~~g~~~~~--~~Ala~~l~e~~~~~~~~~~~~-~~~~l~~~L~~~-G~~~~~p 342 (460)
T PRK13238 287 LY--------------------EGFPTYGGLAGRD--MEALAVGLYEGMDEDYLAYRIG-QVEYLGEGLEEA-GVPIQTP 342 (460)
T ss_pred cc--------------------CCcccccCcHHHH--HHHHHhhHHHhhChHHHHHHHH-HHHHHHHHHHHC-CCCeEcc
Confidence 00 0000123322221 1222221112222233333322 468888999876 8888877
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHh
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQK 486 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 486 (625)
. ++++.|.-....... ..+.+.....++..|.++.||.+.++..+..+... ..+.. .
T Consensus 343 ~----Gg~~v~~d~~~~~~~------~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~-~~~~~--~---------- 399 (460)
T PRK13238 343 A----GGHAVFVDAGKFLPH------IPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDP-KTGEQ--L---------- 399 (460)
T ss_pred C----CceEEEEEchhcCCC------CCCCCCchHHHHHHHHHHcCeeeecccceecccCC-CCccc--c----------
Confidence 4 344444332211000 01112234668888888999999877655422100 00000 0
Q ss_pred CCCCCCCcEEEEecCC-CCCHHHHHHHHHHHHHHHHhhhhcccCccc
Q 043646 487 GYLGVKPGWTRITFPY-YMSNEEFEFILAALEFIAAYGHRFLPLYHF 532 (625)
Q Consensus 487 g~~g~~~g~iRis~~~-~~t~edid~ll~aL~~~~~~~~~~~~~y~~ 532 (625)
--....+|+++.- --|.++++.+.++|+.+.++... ++-|.|
T Consensus 400 ---~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~ 442 (460)
T PRK13238 400 ---PAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENRES-IKGLRF 442 (460)
T ss_pred ---CCccceEEEecccccCCHHHHHHHHHHHHHHHHhHhh-cCCeEE
Confidence 0024789999972 33889999999999998866433 444444
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=194.35 Aligned_cols=276 Identities=19% Similarity=0.162 Sum_probs=190.0
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
.++|+++++++|.+++ +|++| +|+++++..+..++ .+| + |++..+.|..+...++..|+
T Consensus 50 ~~lr~~la~~~~~~~~-~i~~t-~G~~~~i~~~~~~l----------------~~g-~--vl~~~p~y~~~~~~~~~~g~ 108 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA-SVLPV-NGAQEAIYLLPRLL----------------APG-R--VLVLAPTYSEYARAWRAAGH 108 (330)
T ss_pred HHHHHHHHHHhCCChh-hEEEC-CCHHHHHHHHHHHh----------------CCC-e--EEEeCCCcHHHHHHHHHcCC
Confidence 6789999999998766 79998 89999999876654 455 3 78888889998888888999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 204 EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 204 ~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
+++.++ |++.+++++. +++++++++|+||||.+.+ +++|+++|+++|+++++|+++.......+
T Consensus 109 ~~~~~~-------d~~~l~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~ 175 (330)
T TIGR01140 109 EVVELP-------DLDRLPAALE------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS 175 (330)
T ss_pred EEEEeC-------CHHHHHhhcc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc
Confidence 998887 7888888774 4679999999999999998 56678888999999999999753221112
Q ss_pred CCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 281 LRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 281 ~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
+... .....++++.|++|+||.|+ ++|++++++++. ..+.+... ..+.+
T Consensus 176 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~--~~l~~~~~---------------------------~~~~s 226 (330)
T TIGR01140 176 LAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALL--ARLREALG---------------------------PWTVN 226 (330)
T ss_pred hhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHH--HHHHhcCC---------------------------CCCch
Confidence 2111 01134688889999998564 479999988762 22221110 01112
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
..+ ..++..++ .+....+.++++.+.+++++.+.|++++.+++..+ .+.+.+.-.+
T Consensus 227 ~~~-q~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~f~~~~~~----------------- 282 (330)
T TIGR01140 227 GPA-RAAGRAAL-ADTAWQAATRARLAAERARLAALLARLGGLEVVGG-----TALFLLVRTP----------------- 282 (330)
T ss_pred HHH-HHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-----CCeEEEEEcC-----------------
Confidence 121 12222333 22222346677888889999999998866665432 2444333222
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
+..++++.|.+ +||.+++|..+.+ ..++++||+++. ..++ ++++++|+
T Consensus 283 ~~~~l~~~l~~-~gi~v~pg~~f~~---------------------------~~~~~iRi~~~~--~~~~-~~~~~~l~ 330 (330)
T TIGR01140 283 DAAALHEALAR-RGILIRDFDNFPG---------------------------LDPRYLRFALPT--DEEN-DRLEEALA 330 (330)
T ss_pred CHHHHHHHHHH-CCEEEEECCCCCC---------------------------CCCCEEEEEecC--HHHH-HHHHHhhC
Confidence 14578888876 7999999987631 124799999973 3344 88888763
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=195.78 Aligned_cols=291 Identities=16% Similarity=0.060 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
.++|+.+++++|++++ +|++| +|++++|..++.++ +.+|+. .|+++.+.|..+....+..|+
T Consensus 62 ~~lr~~ia~~~~~~~~-~I~~t-~G~~~~l~~~~~~~---------------~~~g~~-~vlv~~p~y~~~~~~~~~~g~ 123 (364)
T PRK04781 62 PGLRSALAALYGCAPE-QLLIG-RGSDEAIDLLVRAL---------------CVPGRD-AVLVTPPVFGMYAVCARLQNA 123 (364)
T ss_pred HHHHHHHHHHhCcChH-HEEEe-CCHHHHHHHHHHHh---------------cCCCCC-eEEEcCCChHHHHHHHHHcCC
Confidence 5688999999999876 89998 89999999998887 467732 488888887766655677899
Q ss_pred eEEEEecCC--CC-CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCcc
Q 043646 204 EVVEIGLDD--NG-LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVK 278 (625)
Q Consensus 204 ~vv~v~~~~--~~-~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~ 278 (625)
+++.++++. ++ .+|++++.+.+.. +++++|++++++||||.+.+.+++.++++. +++++|+|+++.--...
T Consensus 124 ~~~~v~~~~~~~~~~~d~~~l~~~~~~----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~ 199 (364)
T PRK04781 124 PLVEVPLVDGADGFHADVPAIVAAALA----SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDV 199 (364)
T ss_pred EEEEEecCCCccCCCcCHHHHHHHHhc----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCC
Confidence 999999842 33 5788888665542 579999999999999999999988888875 48999999996521111
Q ss_pred ccCCC-CCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 279 INLRS-RNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 279 id~~~-~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
..... .....--+++.|++|.||.|+ .+|+++.++++. +.+..... ..+.
T Consensus 200 ~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~--~~l~~~~~--------------------------~~~~ 251 (364)
T PRK04781 200 PSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELI--AVLRRCQA--------------------------PYPV 251 (364)
T ss_pred cchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHH--HHHHhccC--------------------------CCCC
Confidence 01000 000112366679999998554 489999988773 22211100 0111
Q ss_pred hhHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcccccc
Q 043646 357 PQIVQMIRAALAFWVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE 433 (625)
Q Consensus 357 ~~~~~~~~aal~~~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~ 433 (625)
..+.+. ++..++ +... .....+..+..++.+.+.|+.++++..+.+. .+.+.|...+
T Consensus 252 ~~~~~~--~a~~~l--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~----~g~f~~~~~~------------ 311 (364)
T PRK04781 252 PTPCAA--LAEQAL--SAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPS----QGNFLLVRFD------------ 311 (364)
T ss_pred CHHHHH--HHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC----CCcEEEEEcC------------
Confidence 112221 222232 1111 2233334566678888889888776433342 2444444332
Q ss_pred CCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 434 RNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 434 ~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
+..++.+.|. ++||.+++|..+.+ .++++||+++ +++++++++
T Consensus 312 -----~~~~~~~~l~-~~gI~v~~~~~~~~----------------------------~~~~~Ris~~---~~~~~~~l~ 354 (364)
T PRK04781 312 -----DAEAAFQALL-AAGVVVRDQRAAPR----------------------------LSDALRITLG---TPEQNDRVL 354 (364)
T ss_pred -----CHHHHHHHHH-HCCeEEeeCCCCCC----------------------------CCCeEEEeCC---CHHHHHHHH
Confidence 1457777775 58999998764320 1479999998 799999999
Q ss_pred HHHHHHHH
Q 043646 514 AALEFIAA 521 (625)
Q Consensus 514 ~aL~~~~~ 521 (625)
++|+++.+
T Consensus 355 ~al~~~~~ 362 (364)
T PRK04781 355 AALQRTQA 362 (364)
T ss_pred HHHHHHHh
Confidence 99998654
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-20 Score=192.25 Aligned_cols=202 Identities=13% Similarity=0.098 Sum_probs=149.1
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
...++|+.+... +.|+.+.+++.+.+... +.+ .|.. .-..++|+++++++|.+++ +|++| +|++++|.
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~Y~~-----~g~~~lr~~ia~~~~~~~~-~I~~t-~G~~~~l~ 86 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKRV--PFN--RYPH-----ITSDPLREAIAEFYGLDAE-NIAVG-NGSDELIS 86 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhcC--ccc--cCCC-----CCHHHHHHHHHHHhCcCcc-eEEEc-CCHHHHHH
Confidence 357899988866 56688888888766321 001 1110 1245688999999998776 89998 89999998
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++..+ +||+ |+++.+.|+.+...++..|++++.++++.++.+|++.+++++ +++
T Consensus 87 ~~~~~~-----------------~gd~--V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~------~~~ 141 (337)
T PRK03967 87 YLVKLF-----------------EGKH--IVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA------KNA 141 (337)
T ss_pred HHHHHh-----------------CCCe--EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc------cCC
Confidence 876643 5675 888989998776667788999999999877789999998754 367
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCC-CCCCCCcEEEEcCCCCCCCCC-CceEEEEe
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRS-RNIDGYDAIFLATHKFLGGPG-TPGILLIS 312 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~-~~~~~~D~v~~S~hK~lggp~-g~G~l~v~ 312 (625)
+++++++|+||||.+.+.++|.++++ +++++|+|++++.-. ...... .....--+++.|++|.|+.|+ .+|+++++
T Consensus 142 ~~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~-~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~ 219 (337)
T PRK03967 142 SAVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS-GKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIAN 219 (337)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc-ccchHHHHhhCCCEEEEecchHhhcchhhhheeeecC
Confidence 89999999999999999999999995 799999999975211 101000 000011356679999998564 48999998
Q ss_pred ccc
Q 043646 313 KAL 315 (625)
Q Consensus 313 ~~~ 315 (625)
+++
T Consensus 220 ~~~ 222 (337)
T PRK03967 220 EEI 222 (337)
T ss_pred HHH
Confidence 776
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=194.93 Aligned_cols=359 Identities=14% Similarity=0.102 Sum_probs=224.8
Q ss_pred CCceEeccCCCCCcchHHHHHHHHHhhCCC------CCCCCC-CcchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEE
Q 043646 75 KRRLTYADHTASGRSLRYIEDYIINNVLPF------YGNTHT-SDSYVGQRMTKMVHEASNYIKRCLG----GGQADAII 143 (625)
Q Consensus 75 ~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~------~~n~~~-~~~~~~~~~~~~~~~~~~~ia~~~g----~~~~~~vi 143 (625)
+.+++-|..+-...+.+.+.+.+.+..... ...++. ..|....+...+.+++.+.+.+.+| .+++ +|+
T Consensus 46 p~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~-~Iv 124 (447)
T PLN02607 46 PSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD-RIV 124 (447)
T ss_pred CCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH-HeE
Confidence 345788888888888888888887654210 001111 0111112334455555555555544 3444 899
Q ss_pred EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCCC--CCCCHHH
Q 043646 144 FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDDN--GLLDIEA 220 (625)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~~--~~ld~~~ 220 (625)
+| +|+++++..++.++ .+|||. |+++.+.|+.+...++ ..|++++.|+.+.. ..+|+++
T Consensus 125 it-~G~t~al~~l~~~l---------------~~pGD~--Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~ 186 (447)
T PLN02607 125 LT-AGATAANELLTFIL---------------ADPGDA--LLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQA 186 (447)
T ss_pred Ec-CChHHHHHHHHHHh---------------CCCCCE--EEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHH
Confidence 98 89999999998877 478986 9999999998876676 46999999998742 4689999
Q ss_pred HHHHHHHhhh-CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCC----CC-C-
Q 043646 221 LRSQLELYKA-AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRS----RN-I- 286 (625)
Q Consensus 221 L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~----~~-~- 286 (625)
+++++++... +.+++++++++|+||||.+.+ +++|.++|++||+++|+|++++.... ...+.. .. .
T Consensus 187 le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~ 266 (447)
T PLN02607 187 LEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKG 266 (447)
T ss_pred HHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCC
Confidence 9999874222 247899999999999999988 67788899999999999999764211 111110 00 0
Q ss_pred -CCCcEEEEcCCCCCCCCC-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH
Q 043646 287 -DGYDAIFLATHKFLGGPG-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI 363 (625)
Q Consensus 287 -~~~D~v~~S~hK~lggp~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 363 (625)
..--.++.|++|.||.|+ .+|+++..+ .+. ..+... ..+ .+.+.+.+.
T Consensus 267 ~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~--~~~~~~-------------------------~~~-~~~s~~~q~- 317 (447)
T PLN02607 267 VAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV--TTARRM-------------------------SSF-TLVSSQTQH- 317 (447)
T ss_pred CcCcEEEEEcchhcCCCCcceEEEEEEcCHHHH--HHHHHH-------------------------hhc-CCCCHHHHH-
Confidence 011256679999998665 489999843 331 111000 000 011222222
Q ss_pred HHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIG----YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g----~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
++..++.+..- .+..+++..+..+.+.+.|++. ++.+..+ .++.+.|.-.+.... ....-.
T Consensus 318 --~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~----~ag~fvw~~L~~~~~--------~~~~~~ 382 (447)
T PLN02607 318 --LLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKG----NAGLFCWMNLSPLLE--------TPTREG 382 (447)
T ss_pred --HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccC----CeeEEEEEEchHhhc--------CCCchh
Confidence 11222212111 2234455555666777788775 6665443 346666665542100 000011
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|.+++||.+.+|..|... .+||+||+|+. .++++++..++.|..+
T Consensus 383 e~~l~~~ll~~~gV~v~pG~~f~~~---------------------------~~g~fRi~fa~-~~~~~l~~gl~Ri~~~ 434 (447)
T PLN02607 383 ELALWDSILREVKLNISPGSSCHCS---------------------------EPGWFRVCFAN-MSEDTLEVALKRIHRF 434 (447)
T ss_pred HHHHHHHHHHhCCEEEcCccccCCC---------------------------CCCEEEEEecc-CCHHHHHHHHHHHHHH
Confidence 2356766767789999999877421 36999999984 4689999999999988
Q ss_pred HHhhh
Q 043646 520 AAYGH 524 (625)
Q Consensus 520 ~~~~~ 524 (625)
+....
T Consensus 435 l~~~~ 439 (447)
T PLN02607 435 MDRRK 439 (447)
T ss_pred HHHHH
Confidence 86543
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=197.70 Aligned_cols=162 Identities=22% Similarity=0.243 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
.....+++++.+++++|++ .++++++|+ +++..++.++ +++||+ |+++...|.+....+
T Consensus 59 ~~p~~~~le~~la~l~g~~---~~v~~ssG~-~Ai~~al~al---------------~~~Gd~--Vi~~~~~y~~t~~~~ 117 (390)
T PRK08133 59 TNPTVTMFQERLAALEGAE---ACVATASGM-AAILAVVMAL---------------LQAGDH--VVSSRSLFGSTVSLF 117 (390)
T ss_pred CChHHHHHHHHHHHHhCCC---cEEEECCHH-HHHHHHHHHH---------------hCCCCE--EEEccCcchhHHHHH
Confidence 3455788999999999975 356664554 5566655555 478885 899988888766543
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|++++.++++ |+++++++++ ++|++|++++++||||.+.|+++|+++||++|+++++|++++.
T Consensus 118 ~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-----~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~ 187 (390)
T PRK08133 118 EKIFARFGIETTFVDLT-----DLDAWRAAVR-----PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCT 187 (390)
T ss_pred HHHHHHcCcEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcc
Confidence 4579999999874 7899999887 6899999999999999999999999999999999999999876
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC-c-eEEEEeccc
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT-P-GILLISKAL 315 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~-G~l~v~~~~ 315 (625)
+.....+ .. ++|+++.|++|++++++. + |+++.+++.
T Consensus 188 ~~~~~pl-~~---g~Divv~S~sK~~~g~g~~~GG~vv~~~~~ 226 (390)
T PRK08133 188 PALQQPL-KL---GADVVIHSATKYLDGQGRVLGGAVVGSKEL 226 (390)
T ss_pred cccCCch-hh---CCcEEEeecceeecCCcceEeEEEEcCHHH
Confidence 6543332 22 789999999999987653 3 666666654
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=197.52 Aligned_cols=358 Identities=13% Similarity=0.118 Sum_probs=220.6
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCC-CCCC------CCCcchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEEE
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPF-YGNT------HTSDSYVGQRMTKMVHEASNYIKRCLG----GGQADAIIF 144 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~-~~n~------~~~~~~~~~~~~~~~~~~~~~ia~~~g----~~~~~~vif 144 (625)
...+.|+.+....+++.+.+.+....... ..+. ....|....+..++.+.+.+++.+.+| ++++ +|++
T Consensus 38 ~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~-~Iii 116 (468)
T PLN02450 38 SGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN-KLVL 116 (468)
T ss_pred CeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH-HeEE
Confidence 46788888887777755555554321100 0000 000111112233455555555555444 3454 7888
Q ss_pred eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCC--CCCCCHHHH
Q 043646 145 CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDD--NGLLDIEAL 221 (625)
Q Consensus 145 t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~~~ld~~~L 221 (625)
| +|++++|..++.++ ++|||. |+++.+.|+.+...+. ..|++++.|+++. +..+|+++|
T Consensus 117 t-~Ga~~al~~l~~~l---------------~~pGd~--Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~l 178 (468)
T PLN02450 117 T-AGATSANETLMFCL---------------AEPGDA--FLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESAL 178 (468)
T ss_pred c-cChHHHHHHHHHHh---------------CCCCCE--EEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHH
Confidence 8 89999999998887 578986 9999999998877777 4799999999863 446788999
Q ss_pred HHHHHHhh-hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC-Cc---c---ccC-CC-----C
Q 043646 222 RSQLELYK-AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV---K---INL-RS-----R 284 (625)
Q Consensus 222 ~~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g-~~---~---id~-~~-----~ 284 (625)
++++.+.. ...+++++++++|+||||.+.+ +++|.++|++||+++|+|++++.- +. . +.+ .. .
T Consensus 179 e~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~ 258 (468)
T PLN02450 179 EEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENT 258 (468)
T ss_pred HHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccC
Confidence 99886421 1237899999999999999987 456788899999999999997631 11 1 111 00 0
Q ss_pred CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH
Q 043646 285 NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI 363 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 363 (625)
....--+++.|++|.|+.|+ .+|+++.+++.. ...+.. ...+ ...+.+.+.
T Consensus 259 ~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l-~~~~~~-------------------------~~~~-~~~s~~~Q~- 310 (468)
T PLN02450 259 DVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMV-VSAATK-------------------------MSSF-GLVSSQTQY- 310 (468)
T ss_pred CCCCcEEEEEeccccCCCCCccEEEEEECCHHH-HHHHHH-------------------------Hhhc-CCCCHHHHH-
Confidence 00122366779999997554 489999876541 111100 0000 112222222
Q ss_pred HHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYI----GYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~----g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
++..++.+.. -.+..+++.++.++.+.+.|.++ ++.+..+ .++.+.|...+.... ......
T Consensus 311 --a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~----~~g~flwi~l~~~~~--------~~~~~~ 375 (468)
T PLN02450 311 --LLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKS----NAGLFCWVDMRHLLK--------SNTFEA 375 (468)
T ss_pred --HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCC----CceEEEEEEchHhcC--------cCCchH
Confidence 2222221211 13344566666677888888876 6666544 345555554432100 000011
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|.+++||.+.+|..|..+ .+||+||+++. .++++++..++.|+++
T Consensus 376 ~~~l~~~ll~~~gV~v~PG~~f~~~---------------------------~~g~~Rl~f~~-~~~~~l~~~l~ri~~~ 427 (468)
T PLN02450 376 EMELWKKIVYEVKLNISPGSSCHCT---------------------------EPGWFRVCFAN-MSEETLDLAMKRLKSF 427 (468)
T ss_pred HHHHHHHHHHhCCEEEeCccccCCC---------------------------CCCEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 2346666667789999999877521 25899999985 4679999999999988
Q ss_pred HHhh
Q 043646 520 AAYG 523 (625)
Q Consensus 520 ~~~~ 523 (625)
+...
T Consensus 428 l~~~ 431 (468)
T PLN02450 428 VESD 431 (468)
T ss_pred HHhc
Confidence 7553
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=197.61 Aligned_cols=306 Identities=14% Similarity=0.115 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-- 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (625)
...+++++.+++++|.+. .+++++|+. ++..++.++ +++||+ |+++...|.+....+
T Consensus 59 p~~~~le~~lA~l~g~~~---av~~~sG~~-Ai~~~l~al---------------~~~Gd~--Vi~~~~~y~~t~~~~~~ 117 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEA---AVATSSGMG-AIAATLLTI---------------LKAGDH--LISDECLYGCTFALLEH 117 (391)
T ss_pred chHHHHHHHHHHHhCCCc---EEEECCHHH-HHHHHHHHH---------------hCCCCE--EEEecCcchHHHHHHHH
Confidence 446779999999999863 345547765 566666555 478885 888888877654433
Q ss_pred --HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 199 --RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 199 --~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
...|++++.++++ |+++++++++ +++++|++++++||+|.+.|+++|+++||++|+++++|++++.+.
T Consensus 118 ~~~~~G~~~~~vd~~-----d~e~l~~~i~-----~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~ 187 (391)
T TIGR01328 118 ALTKFGIQVDFINMA-----IPEEVKAHIK-----DNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPM 187 (391)
T ss_pred HHhcCCeEEEEECCC-----CHHHHHHhhc-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhc
Confidence 3468999988875 7899999887 579999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
....+. . ++|++++|++|++++++. .|+++.++++. ..+... ..+...
T Consensus 188 ~~~~~~-~---g~Divv~S~sK~lgg~g~~~gG~v~~~~~li--~~l~~~------------------------~~~~~~ 237 (391)
T TIGR01328 188 LTNPVA-L---GVDVVVHSATKYIGGHGDVVAGLICGKAELL--QQIRMV------------------------GIKDMT 237 (391)
T ss_pred cCCchh-c---CCCEEEccccccccCCCCceEEEEEcCHHHH--HHHHHH------------------------HHHhCC
Confidence 533332 2 789999999999998875 47777777652 111100 000011
Q ss_pred C-Ch-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEE
Q 043646 355 G-TP-QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFL 418 (625)
Q Consensus 355 g-t~-~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~ 418 (625)
| .. ++.+. +... .......+.++.++++.++.++|.+.|+++ ++.|.- ..-+++++|.
T Consensus 238 g~~l~~~~a~----l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~ 311 (391)
T TIGR01328 238 GSVISPFDAW----LILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFE 311 (391)
T ss_pred CCCCCcHHHH----HHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEE
Confidence 2 11 11111 1111 112234455667778999999999988874 433310 1236788888
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
+..+. -....+.+.| +.+.+.+.-|...+- |.......+..+... ..|+.++.
T Consensus 312 ~~~~~--------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi~~~l 367 (391)
T TIGR01328 312 LKGGF--------------AGAKKLLNNL-KLIRLAVSLGDAETLIQHPASMTHAVVPKEERE---------AAGITDGM 367 (391)
T ss_pred eCCCH--------------HHHHHHHHhC-CcceEecCCCCCcccCcCCCccccccCCHHHHH---------hcCCCCCe
Confidence 74211 0122344444 333333433332210 111111122211111 25677899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 496 TRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
||||+|. ||.+.|++-|++.+.
T Consensus 368 iR~svGl----E~~~dl~~dl~~al~ 389 (391)
T TIGR01328 368 IRLSVGL----EDADDLIADLKQALD 389 (391)
T ss_pred EEEEeCc----CCHHHHHHHHHHHHh
Confidence 9999996 566667776666554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=197.15 Aligned_cols=307 Identities=15% Similarity=0.128 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-- 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (625)
...+++++.|+++.|.. + .+++ ++|+ ++|..++.++ +++||+ |+++.+.|......+
T Consensus 60 p~~~~Le~~lA~l~g~~-~-~v~~-~sG~-~Ai~~~l~al---------------l~pGD~--Vvv~~p~Y~~t~~~~~~ 118 (405)
T PRK08776 60 PTRDLLGEALAELEGGA-G-GVIT-ATGM-GAINLVLNAL---------------LQPGDT--LVVPHDAYGGSWRLFNA 118 (405)
T ss_pred hHHHHHHHHHHHHhCCC-c-eEEE-cCHH-HHHHHHHHHH---------------hCCCCE--EEEccCCchHHHHHHHH
Confidence 34567889999999974 3 4555 4774 7788888776 578986 888888887744333
Q ss_pred --HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 199 --RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 199 --~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
...|.+++.++. .|+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++++|++++.+.
T Consensus 119 ~~~~~g~~v~~v~~-----~d~~~l~~~i~-----~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 119 LAKKGHFALITADL-----TDPRSLADALA-----QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred HHHhcCcEEEEECC-----CCHHHHHHhcC-----cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 334778887765 37899999887 579999999999999999999999999999999999999988765
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
....+ .+ ++|++++|+||+++|+++ .|+++.+++.. .+.+.. .+...
T Consensus 189 ~~~pl-~~---gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l-~~~l~~--------------------------~~~~~ 237 (405)
T PRK08776 189 LQKPL-EF---GADLVLHSTTKYINGHSDVVGGAVVARDAEL-HQQLVW--------------------------WANAL 237 (405)
T ss_pred cCCcc-cc---cCCEEEecCceeecCCCCceEEEEEeCCHHH-HHHHHH--------------------------HHHhc
Confidence 43223 23 789999999999998875 47776654321 111100 00011
Q ss_pred C-ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEEe
Q 043646 355 G-TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFLV 419 (625)
Q Consensus 355 g-t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~~ 419 (625)
| .++..... +.. ......+.+.++..+++..+.+.|++.|.+. |+.|.- ...+++++|.+
T Consensus 238 g~~~s~~~a~---l~~--~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~ 312 (405)
T PRK08776 238 GLTGSPFDAF---LTL--RGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFEL 312 (405)
T ss_pred CCCCCHHHHH---HHH--hhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEE
Confidence 1 12222211 100 0112245566677778999999999988874 444321 12466888887
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
..+. -....+.+.| +.+.+.+.-|...+. |....+..+.++.-. ..|+.++.|
T Consensus 313 ~~~~--------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~~gi~~~li 368 (405)
T PRK08776 313 EGGE--------------AAVRAFVDGL-RYFTLAESLGGVESLIAHPASMTHAAMTAEARA---------AAGISDGLL 368 (405)
T ss_pred cCCH--------------HHHHHHHHhC-CcceEccCCCCCceEEECCcccccccCCHHHHH---------hcCCCCCeE
Confidence 4211 0022445555 334444444432221 111111122221111 256778999
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 043646 497 RITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~ 518 (625)
|||+|.-..++=++.+-++|+.
T Consensus 369 R~svGlE~~~dli~dl~~al~~ 390 (405)
T PRK08776 369 RLSVGIESAEDLLIDLRAGLAR 390 (405)
T ss_pred EEEeCcCCHHHHHHHHHHHHHH
Confidence 9999975444334444444443
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=190.90 Aligned_cols=319 Identities=13% Similarity=0.042 Sum_probs=203.2
Q ss_pred ceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..+.|+.+.. ..+|+.+.+++.+.+......|.. -..++|+.++++++.+++ +|++| +|++++|..
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~-~I~it-~G~~~al~~ 97 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAERVHSYPKA-----------SHADLTAALADRWDVSPE-QVWLA-NGGDGALDY 97 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCCCC-----------CHHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHHH
Confidence 3556655433 234567778877665322111211 134688899999999877 89988 899999999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ +++||+ |+++.+.|+.+....+..|++++.++++. +..++++++.+... +
T Consensus 98 ~~~~~---------------~~~gd~--V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~------~ 154 (357)
T PRK14809 98 LARAM---------------LDPGDT--VLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD------G 154 (357)
T ss_pred HHHHh---------------cCCCCE--EEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc------C
Confidence 98877 578986 89888888777666777899999999864 34567777665542 5
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCcccc-CCCCCCCCCcEEEEcCCCCCCCCC-CceEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKIN-LRSRNIDGYDAIFLATHKFLGGPG-TPGIL 309 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id-~~~~~~~~~D~v~~S~hK~lggp~-g~G~l 309 (625)
++++++++++||||.+.+.+++.++++.. ++++++|+++..-..... ........--+++.|++|.||.|+ .+|++
T Consensus 155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~ 234 (357)
T PRK14809 155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYA 234 (357)
T ss_pred CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheee
Confidence 79999999999999999988887777653 789999999653211101 000100112356679999998554 48999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
+.++++. +.+.... ...+.+.+.+ .+++..+ .+..-.+...+..+..++
T Consensus 235 ~~~~~~~--~~~~~~~--------------------------~~~~~~~~~~--~~a~~~l-~~~~~~~~~~~~~~~~r~ 283 (357)
T PRK14809 235 VVPEEWA--DAYARVN--------------------------TPFAASELAC--RAGLAAL-DDDEHVERTVETARWARE 283 (357)
T ss_pred ecCHHHH--HHHHHhC--------------------------CCCCCCHHHH--HHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 9988762 2221100 0011112211 2222322 111113344445555566
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|... .+ + ..+.+.+...+ +..++++.| .++||.+++|..|+
T Consensus 284 ~l~~~L~~~----~~-~----~~g~f~~~~~~-----------------~~~~~~~~l-~~~gv~v~~g~~f~------- 329 (357)
T PRK14809 284 YIREELDAP----TW-E----SAGNFVLAEVG-----------------DASAVAEAA-QERGVIVRDCTSFG------- 329 (357)
T ss_pred HHHHHhcCc----cC-C----CCCCEEEEECC-----------------CHHHHHHHH-HHCCEEEEECccCC-------
Confidence 677777542 11 2 12334343322 145788887 45799999987664
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +.++++.++++|+.+++
T Consensus 330 ----------------------~~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 330 ----------------------LPECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred ----------------------CCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1378999986 57999999999988753
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=186.75 Aligned_cols=360 Identities=15% Similarity=0.154 Sum_probs=237.6
Q ss_pred ccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 34 QTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
+.++..+++.+++.. .+++..++..|.-+.- .+.-.+| -|+|.-+++.-+-...... .....|++...
T Consensus 64 P~~L~~l~nlel~~~~esl~qil~~cr~tl~y-~vKTgHp------rffNQl~~glD~~~Lag~w----lT~t~Ntn~~T 132 (510)
T KOG0629|consen 64 PDELKELFNLELRDQPESLAQILEDCRDTLKY-SVKTGHP------RFFNQLSSGLDPIGLAGEW----LTSTANTNMFT 132 (510)
T ss_pred hHHHHHHhCcccCCChhhHHHHHHHHHHHHHh-hhccCCC------cchhhhccCCCHHHHHHHH----HHhccCCCCce
Confidence 455666777777777 6667777777765532 1222222 2555555555443332222 22336777777
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
|...+.+.-+..++-..+.+..|.+....-+|+.+|+.++++.+..+.--..|...... ...+++ -+++++..+|+
T Consensus 133 YEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~G-m~~~p~---lilFtSeesHY 208 (510)
T KOG0629|consen 133 YEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKG-MFALPP---LILFTSEESHY 208 (510)
T ss_pred EEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhh-hhcCCc---EEEEecccchh
Confidence 77888888888899999999999987434688888999999998877633333211111 112332 36788899999
Q ss_pred hhHHHHHHcC---CeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEE
Q 043646 193 SNLLSWRQSL---AEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268 (625)
Q Consensus 193 s~~~~~~~~G---~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~viv 268 (625)
|+.++.+..| -+++.|+.++.|.+++++||+.|.+....+ -|.+|..++.+++-|+++|++.|+++|++|+.|+||
T Consensus 209 Si~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHv 288 (510)
T KOG0629|consen 209 SIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHV 288 (510)
T ss_pred hHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEe
Confidence 9999988887 489999999999999999999997643322 479999999999999999999999999999999999
Q ss_pred eccCcCCCccccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 269 DFAASGPYVKINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 269 D~A~~~g~~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
|+|.+.|..--..+.. +.+.+|+++.++||++|+|.-|+.++.+.+.. +..... ....|. |. .+..|
T Consensus 289 DAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gl-l~~Cn~-----~~A~YL--Fq-~dK~Y- 358 (510)
T KOG0629|consen 289 DAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGL-LQRCNQ-----MSAIYL--FQ-QDKFY- 358 (510)
T ss_pred ecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHH-HHhhcc-----cchhhh--hc-cCcee-
Confidence 9998876542211111 33578999999999999999899888876652 111100 000000 00 00111
Q ss_pred cchhhhhcCCChhH-HHHHHHHHHHH----HHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEec
Q 043646 346 EDIEERENGGTPQI-VQMIRAALAFW----VKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 346 ~~~~~~~~~gt~~~-~~~~~aal~~~----~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~ 420 (625)
...++.|.-.+ ++--.-.+.+| .+...|.+...++..++++|+.++|++-++.+.+-.. ++..-+++|...
T Consensus 359 ---dvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~-~pe~~nv~fw~v 434 (510)
T KOG0629|consen 359 ---DVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFEL-EPEHVNVCFWYV 434 (510)
T ss_pred ---ecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcC-CCceEEEeeccC
Confidence 01111221111 00001123344 3456788999999999999999999998887655432 234567788776
Q ss_pred cC
Q 043646 421 ST 422 (625)
Q Consensus 421 ~~ 422 (625)
|.
T Consensus 435 p~ 436 (510)
T KOG0629|consen 435 PP 436 (510)
T ss_pred ch
Confidence 64
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=197.35 Aligned_cols=310 Identities=17% Similarity=0.109 Sum_probs=193.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.++++.|++. .++|+ +|+ +++..++.++ +++||+ |+++...|.+.
T Consensus 58 y~r~~~p~~~~le~~lA~l~g~~~--~i~~s-sG~-~Ai~~~l~al---------------l~~GD~--Vi~~~~~y~~~ 116 (398)
T PRK08249 58 YSRNTNPTVQAFEEKVRILEGAEA--ATAFS-TGM-AAISNTLYTF---------------LKPGDR--VVSIKDTYGGT 116 (398)
T ss_pred ccCCCChHHHHHHHHHHHHhCCCe--EEEeC-ChH-HHHHHHHHHh---------------cCCCCE--EEEcCCchHHH
Confidence 444455667889999999999742 45554 675 5576666655 578885 99999999886
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+ +..|++++.++. .|+++++++|+ ++|++|++++++||||.+.|+++|+++||++|+++++|+
T Consensus 117 ~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~-----~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~ 186 (398)
T PRK08249 117 NKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIA-----KGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDN 186 (398)
T ss_pred HHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcC-----CCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEEC
Confidence 5444 346888887763 48999999997 589999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+++.++....+ .+ ++|+++.|++|+++|++. .|+++.++++. +.+...
T Consensus 187 t~a~~~~~~~l-~~---~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~--~~l~~~------------------------ 236 (398)
T PRK08249 187 TFATPINQNPL-AL---GADLVIHSATKFLSGHADALGGVVCGSKELM--EQVYHY------------------------ 236 (398)
T ss_pred CcCccccCCch-hh---CCCEEeccCceecCCCCCceEEEEECCHHHH--HHHHHH------------------------
Confidence 98866543222 22 789999999999987653 36666655552 111100
Q ss_pred hhhhcCCCh-hHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 349 EERENGGTP-QIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 349 ~~~~~~gt~-~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
.....++. ++.+. +..++ ...+...++..+++..+.++|++.|.++ |+.|.- ...+
T Consensus 237 -~~~~g~~~s~~~a~l~l~~l-------~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g 308 (398)
T PRK08249 237 -REINGATMDPMSAYLILRGM-------KTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFG 308 (398)
T ss_pred -HHhcCCCCCHHHHHHHHhCc-------chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCC
Confidence 00111121 22221 11111 1233444566677888999999888775 444321 1246
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
++++|.+..+. -....+.+.| +.+.+.+.-|...+. |.......+..+... ..
T Consensus 309 ~~~sf~~~~~~--------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~ 364 (398)
T PRK08249 309 GILSFVLKGGM--------------DTVKRLLPKL-RYAHRAANLGAVETIYGPARTTSHVENTLEERA---------AL 364 (398)
T ss_pred ceEEEEEcCCH--------------HHHHHHHHhC-CcceEccCCCCCCceeeCCcccccccCCHHHHH---------hc
Confidence 78888874211 0123445555 334444443332210 111111122221111 25
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
|+.++.||||+|.-..++=++.|.++|+
T Consensus 365 gi~~~liR~svGlE~~~dl~~dl~~al~ 392 (398)
T PRK08249 365 GIPEGLVRISVGIEDTEDLIADLEQAFA 392 (398)
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 6778999999997444433444444443
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=194.89 Aligned_cols=347 Identities=16% Similarity=0.074 Sum_probs=212.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
.++|+.+.+++.+.+.. +....|....+..++.+.+.+++++..|. +++ +|++| +|++++|..++. +
T Consensus 47 ~~~p~~~~~a~~~~~~~----~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~-~I~it-~G~~~al~~~~~-l---- 115 (433)
T PRK06855 47 EKIPDWMKEIVAELVMD----DKSYGYCPTKGVLETREFLAELNNKRGGAQITPD-DIIFF-NGLGDAIAKIYG-L---- 115 (433)
T ss_pred CCCCHHHHHHHHHHhhc----CCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHh-HEEEc-CcHHHHHHHHHH-h----
Confidence 36677788887765532 11111222233455556666666665454 444 89998 899999988865 3
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-HHcCCeEEEEecCC-C-CCCCHHHHHHHHHHhhhCCCCeEEEEec
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-RQSLAEVVEIGLDD-N-GLLDIEALRSQLELYKAAKRPMLGSFSA 241 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-~~~G~~vv~v~~~~-~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~ 241 (625)
+.+||+ |++..+.|+.+.... ...|++++.+++++ + ..+|+++|++++.+. ++++++++++
T Consensus 116 -----------~~~Gd~--Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~i~l~~ 179 (433)
T PRK06855 116 -----------LRREAR--VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN---PSIAGILLIN 179 (433)
T ss_pred -----------cCCCCe--EEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC---CCceEEEEEC
Confidence 468886 888888888765332 34588889999874 3 468999999998631 3678999999
Q ss_pred ccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 242 CSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 242 ~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
|+||||.+.+ +++|+++|++||+++|+|++++--. ....+.....+...+++.|++|.|+.|+ .+|++++..
T Consensus 180 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~ 259 (433)
T PRK06855 180 PDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYN 259 (433)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeC
Confidence 9999999988 4667888999999999999965221 1111111111122377789999997565 489999842
Q ss_pred cc-----cc-cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh---cCHHHHHHHH
Q 043646 314 AL-----YQ-LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY---IGYEVIKKQE 384 (625)
Q Consensus 314 ~~-----~~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~---~g~~~i~~~~ 384 (625)
.. .. +..+.. ......+.+.+.+. ++..++ .+. .-.+..++..
T Consensus 260 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~Q~--a~~~~l-~~~~~~~~~~~~~~~~ 311 (433)
T PRK06855 260 ADKDEVFKKYINSILN-------------------------AKMIEVCSTTLPQM--AIPRIM-SHPEYKNYLKERNKRY 311 (433)
T ss_pred CchhhHHHHHHHHHHH-------------------------hhccccCCChHHHH--HHHHhh-cCCcHHHHHHHHHHHH
Confidence 11 00 000000 00011122233222 222222 111 1133455566
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCC--CCCccccc------------cCCCCCChHHHHHHhhhh
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN--SSPENMKI------------ERNKPLHGPFVATLFNDL 450 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~--~~~~~~~~------------~~~~~l~~~~v~~~L~~~ 450 (625)
++.++.+.+.|.+++++.+..+ .++.+.|...++.. +.. .... .++...+..+++..|.++
T Consensus 312 ~~r~~~~~~~L~~~~~~~~~~p----~gg~~~w~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (433)
T PRK06855 312 EKRSNIAYEKLKDVPGLKVNRT----NGAFYMTVVFEDGVLNNKQ-SLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLAS 386 (433)
T ss_pred HHHHHHHHHHHhcCCCeeccCC----CeeEEEeeccccccccccc-cCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 6677888888988777776554 34666666554310 000 0000 000001244566666677
Q ss_pred cCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 451 ~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.||.+.+|..|+.. ...+|||+.. .+.++++..++.|.+++.+
T Consensus 387 ~gV~v~PG~~F~~~----------------------------~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 387 TGICVVPLSSFCTE----------------------------LNGFRVTLLE-RDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred cCEEEecCCcCCCC----------------------------CCceEEEECC-CcHHHHHHHHHHHHHHHHH
Confidence 89999999877511 2349999975 4789999999999988865
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=188.19 Aligned_cols=325 Identities=14% Similarity=0.085 Sum_probs=201.8
Q ss_pred hHHHHHHHHHhhcCCCccccCCCCCCc-eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHH
Q 043646 51 SEEKLAWLRSQIIGNDVEFDYSFGKRR-LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNY 129 (625)
Q Consensus 51 ~~~~~~~lr~~~~~~~~~~~~p~g~~~-~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 129 (625)
.+.-|+.+|+..-.. |++. .=||..+.... +.++..+.+..+ + +..++.+++++.
T Consensus 7 ~~~~~~~~~~~~~~~--------~~~~~~~ylgl~~~~~----~~~~~~~~~~~~-~-----------g~~~~~~~Le~~ 62 (346)
T TIGR03576 7 REKALEIIREKISRG--------GRDSLYDLTGLAGGFK----IDEEDLELLETY-V-----------GPAIFEEKVQEL 62 (346)
T ss_pred HHHHHHHHHHHHhcc--------CCccccccccCCCChh----HHHHHHHHHHHh-c-----------CCHHHHHHHHHH
Confidence 467788888877433 2111 23666554444 444444444332 1 134778899999
Q ss_pred HHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc---CCCCchhHHHHHHcCCeEE
Q 043646 130 IKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG---PYEHHSNLLSWRQSLAEVV 206 (625)
Q Consensus 130 ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~---~~~h~s~~~~~~~~G~~vv 206 (625)
+++++|.+++ +++++ +|+++++..++.++ +++||. |+++ .+.|.++...++..|++++
T Consensus 63 lA~~~g~~~e-~ilv~-~gg~~a~~~~~~al---------------~~~gd~--Vli~~~d~p~~~s~~~~~~l~ga~~~ 123 (346)
T TIGR03576 63 GREHLGGPEE-KILVF-NRTSSAILATILAL---------------EPPGRK--VVHYLPEKPAHPSIPRSCKLAGAEYF 123 (346)
T ss_pred HHHHcCCCcc-eEEEE-CCHHHHHHHHHHHh---------------CCCCCE--EEECCCCCCCchhHHHHHHHcCCEEe
Confidence 9999999776 67777 67777788887777 578885 6653 4699999888998998864
Q ss_pred EEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCCccc-cCC
Q 043646 207 EIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPYVKI-NLR 282 (625)
Q Consensus 207 ~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~~~i-d~~ 282 (625)
.+ .++++++. . +++++|+++. ++++|.+ .|+++|+++|+++|+++++|+||+.+.... +..
T Consensus 124 ~~-------~~l~~l~~--~-----~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~ 188 (346)
T TIGR03576 124 ES-------DELSELKK--I-----DGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP 188 (346)
T ss_pred cc-------CCHHHHhh--C-----cCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCC
Confidence 32 14554321 1 4678888865 6899998 689999999999999999999998765321 111
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH-HH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQ 361 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~ 361 (625)
.....+.|+++.|++|+++|+. .|++++++++. +.+.... ..+....++. ..
T Consensus 189 ~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li--~~l~~~~------------------------~~~~~s~~~~~~~ 241 (346)
T TIGR03576 189 PALDLGADLVVTSTDKLMDGPR-GGLLAGRKELV--DKIKSVG------------------------EQFGLEAQAPLLA 241 (346)
T ss_pred CHHHcCCcEEEeccchhccccc-eEEEEeCHHHH--HHHHHhh------------------------cCcccCccHHHHH
Confidence 1101157899999999987677 49999998873 2221110 0011111222 22
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
.+.++++ ....+.+++..+...+++.+.+..+ .+..+. ..+.|.-.+. .+..
T Consensus 242 aa~~aL~-----~~~~~~~~~~l~~r~~~~~~~l~~~---~~~~~~-----~~f~~~~~~~---------------~~~~ 293 (346)
T TIGR03576 242 AVVRALE-----EFELSRIRDAFKRKEEVYLRLFDKL---NVERTP-----TGFVIKGVEE---------------EKLI 293 (346)
T ss_pred HHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHhC---CCCcCC-----CeEEEEeCCC---------------CCHH
Confidence 2222222 2223455666666666666666643 332211 2233332221 1123
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH----HHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE----EFEFILAALE 517 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e----did~ll~aL~ 517 (625)
+++..+++++||.+++|..+. + .++|+|||++ +++ +++.++++|+
T Consensus 294 ~~~~~ll~~~gV~v~~~~~f~--------~--------------------~~~~vRis~~---~~~~~~~~~~~~~~al~ 342 (346)
T TIGR03576 294 EIGLDLLRNYGIITITAVGMP--------G--------------------ASKTLRFDLA---AKDAERIGDDYLVEAVK 342 (346)
T ss_pred HHHHHHHHhCCEEEeCCcccC--------C--------------------CCCeEEEEEe---cChHHhcCHHHHHHHHH
Confidence 445555577899999876442 0 2489999998 334 7999999998
Q ss_pred HH
Q 043646 518 FI 519 (625)
Q Consensus 518 ~~ 519 (625)
+.
T Consensus 343 ~~ 344 (346)
T TIGR03576 343 DS 344 (346)
T ss_pred hc
Confidence 64
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-20 Score=197.29 Aligned_cols=327 Identities=19% Similarity=0.142 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW- 198 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (625)
....+.+++.++++.|++. .+++++|+.+ +..++.++ +++||+ |+++...|.+....+
T Consensus 68 ~p~~~~Le~~lA~l~g~~~---av~~sSG~aA-i~~al~al---------------l~~Gd~--Vv~~~~~y~~t~~~~~ 126 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVA---ALLLASGQAA-ETFAILNL---------------AGAGDH--IVSSPRLYGGTYNLFH 126 (436)
T ss_pred CchHHHHHHHHHHHhCCCe---EEEEccHHHH-HHHHHHHH---------------hCCCCE--EEEeCCcchHHHHHHH
Confidence 3446689999999999863 3444477664 66555555 578885 888888888766443
Q ss_pred ---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 199 ---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 199 ---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
...|++++.++ +. .|+++++++++ +++++|++++++||+|.+.|+++|+++||++|+++++|++++.|
T Consensus 127 ~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~-----~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~ 197 (436)
T PRK07812 127 YTLPKLGIEVSFVE-DP---DDLDAWRAAVR-----PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATP 197 (436)
T ss_pred HHhhcCeEEEEEEC-CC---CCHHHHHHhCC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 33688888885 32 28999999887 68999999999999999999999999999999999999999887
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEeccccccCCCCCcccCCceEEeecccccccccccc--------
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE-------- 346 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~-------- 346 (625)
+....+ .+ ++|+++.|+||++||+++ +|.+++......... +.....-+ .+..|..
T Consensus 198 ~~~~pl-~~---GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~ 262 (436)
T PRK07812 198 YLIRPL-EH---GADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQ--GRFPGFTT---------PDPSYHGVVFAELGP 262 (436)
T ss_pred ccCCch-hc---CCCEEEEecccccCCCCCeEEEEEEcCCcccccc--cccccccc---------CCcccccchhhhcch
Confidence 664443 23 899999999999997754 666666443211111 11100000 0000000
Q ss_pred -----ch--hhhhcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCC--C-------
Q 043646 347 -----DI--EERENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNT--S------- 408 (625)
Q Consensus 347 -----~~--~~~~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~--~------- 408 (625)
.. ......|. .+... +. +++........+.++..+.+..+.+.|++.|.+ +|+.|. +
T Consensus 263 ~~~~~~~~~~~~~~~G~~l~p~~---a~--l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~ 337 (436)
T PRK07812 263 PAYALKARVQLLRDLGSAISPFN---AF--LIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERA 337 (436)
T ss_pred hHHHHHHHHHHHHhcCCCCCHHH---HH--HHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHH
Confidence 00 00111121 11111 11 111122335555666777799999999999887 354441 1
Q ss_pred -----CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHH
Q 043646 409 -----VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 409 -----~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~ 480 (625)
..-+++++|.+..+. -....+.+.| +.+.+.+.-|...+ .|....+..+..+...
T Consensus 338 ~~~~~~g~gg~~sf~l~~~~--------------~~~~~f~~~l-~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~-- 400 (436)
T PRK07812 338 KRLAPKGTGAVLSFELAGGV--------------EAGKAFVNAL-TLHSHVANIGDVRSLVIHPASTTHSQLTPEEQL-- 400 (436)
T ss_pred HHhCcCCCceEEEEEecCCH--------------HHHHHHHHhC-CcceEecccCCCcceeeCCCCCCcccCCHHHHH--
Confidence 124678888874321 0123455555 34444443333222 0111111222222111
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
..|+.++.||||+|. ||++.+++-|++.++...
T Consensus 401 -------~~gi~~~liRlSvGl----Ed~~dli~dl~~Al~~~~ 433 (436)
T PRK07812 401 -------ATGVTPGLVRLAVGI----EGIDDILADLEAGFAAAK 433 (436)
T ss_pred -------hcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence 257778999999996 566666666666665443
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=194.78 Aligned_cols=223 Identities=17% Similarity=0.149 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
...++++++.+++++|++. .++++ +|+++++..++.++ +++||+ |+++...|.++..++.
T Consensus 58 ~g~i~~~~~~~A~~~ga~~--~~~~~-~Gst~a~~~~l~al---------------~~~gd~--Vlv~~~~h~s~~~~~~ 117 (294)
T cd00615 58 TGPIKEAQELAARAFGAKH--TFFLV-NGTSSSNKAVILAV---------------CGPGDK--ILIDRNCHKSVINGLV 117 (294)
T ss_pred ChHHHHHHHHHHHHhCCCC--EEEEc-CcHHHHHHHHHHHc---------------CCCCCE--EEEeCCchHHHHHHHH
Confidence 3467889999999999752 34446 78888888777766 578886 9999999999999999
Q ss_pred HcCCeEEEEecCCC------CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc
Q 043646 200 QSLAEVVEIGLDDN------GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 200 ~~G~~vv~v~~~~~------~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~ 273 (625)
..|+++++++.+.+ +.+|++++++++++. +++++|+++++ |++|.+.|+++|+++||++|+++++|+||+
T Consensus 118 ~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~---~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~ 193 (294)
T cd00615 118 LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEH---PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHG 193 (294)
T ss_pred HCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhC---CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcch
Confidence 99999999977542 378999999999742 46899999987 789999999999999999999999999987
Q ss_pred CC-----CccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 274 GP-----YVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 274 ~g-----~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
.. ..+.+.... ++|+++.|+||+++++.+.|++.+++....... +...
T Consensus 194 ~~~~~~~~~~~~~~~~---~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~------------------------~~~~ 246 (294)
T cd00615 194 AHFRFHPILPSSAAMA---GADIVVQSTHKTLPALTQGSMIHVKGDLVNPDR------------------------VNEA 246 (294)
T ss_pred hhhccCcccCcchhhc---CCcEEEEchhcccchHhHHHHHHhCCCcCCHHH------------------------HHHH
Confidence 53 223333222 789999999999988876678777665311000 0011
Q ss_pred hhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 349 EERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 349 ~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
...+..++|++..+.. ++++++ ...|.+ ..++..+++++++++|.
T Consensus 247 ~~~~~ttsps~~~~asl~~a~~~~--~~~g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 247 LNLHQSTSPSYLILASLDVARAMM--ALEGKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHHHCCCCcHHHHHHHHHHHHHHH--HHHhHH-HHHHHHHHHHHHHHHHh
Confidence 2345566777766543 344444 334554 45567777888888775
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=189.54 Aligned_cols=283 Identities=12% Similarity=-0.051 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
..++++.+++++|.+++ +|++| +|++++|..++..+ ++++ |++..+.|+.+...++..|
T Consensus 42 ~~~lr~~ia~~~~~~~~-~I~it-~Gs~~~l~~~~~~~----------------~~~~---vv~~~P~y~~y~~~~~~~G 100 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKI-KVLIG-PGLTHFIYRLLSYI----------------NVGN---IIIVEPNFNEYKGYAFTHG 100 (332)
T ss_pred HHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHHHHHHHh----------------CCCc---EEEeCCChHHHHHHHHHcC
Confidence 46699999999999877 78887 89999999887643 4553 5566888999888899999
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCcc-
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVK- 278 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~~- 278 (625)
++++.+|++.. ..|.+.++ . .+++++++++|+||||.+.+. ++|+++|+++|+++++|+++.--...
T Consensus 101 ~~v~~vp~~~~-~~~~~~l~----~----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~ 171 (332)
T PRK06425 101 IRISALPFNLI-NNNPEILN----N----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR 171 (332)
T ss_pred CeEEEEeCCcc-cCcHHHHh----h----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc
Confidence 99999998753 34544433 2 378999999999999999884 56777888999999999995421110
Q ss_pred -ccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 279 -INLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 279 -id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
...... ....--+++.|++|.+|.|+ .+|+++.++++.+ .+.... ...
T Consensus 172 ~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~--~l~~~~---------------------------~~~ 222 (332)
T PRK06425 172 AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMK--ISRKIT---------------------------EPW 222 (332)
T ss_pred chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHH--HHHHcC---------------------------CCC
Confidence 011111 00012356679999998565 4899999887732 221100 000
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
+.+. .+.+++.... ...-.+...+..++.++++.+.|.++ +++++.+. . +.+.+...+
T Consensus 223 ~~~~--~~~~~l~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~---~-g~f~~~~~~-------------- 280 (332)
T PRK06425 223 SVCD--PAIDFIRSID-LDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDP---S-ANFITFMIP-------------- 280 (332)
T ss_pred ccCH--HHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCC---C-ceEEEEEcC--------------
Confidence 0011 1111111100 00012344566666788888888877 67765432 2 333333322
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
+..++++.|.+ +||.+++|..|... .++++||+++ +.+++++++++
T Consensus 281 ---~~~~~~~~l~~-~gi~v~~~~~f~~~---------------------------~~~~iRis~~---~~~~~~~l~~a 326 (332)
T PRK06425 281 ---DAHDFYSYLLK-NGILVRLLDDYECL---------------------------GEQYIRIAIR---RRSFNIKLVNA 326 (332)
T ss_pred ---CHHHHHHHHHH-CCeEEEECCCCCCC---------------------------CCCEEEEEeC---CHHHHHHHHHH
Confidence 14578888866 79999998766311 2479999998 88999999999
Q ss_pred HHHHH
Q 043646 516 LEFIA 520 (625)
Q Consensus 516 L~~~~ 520 (625)
|++++
T Consensus 327 l~~~~ 331 (332)
T PRK06425 327 LRNFL 331 (332)
T ss_pred HHHHh
Confidence 99764
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=191.83 Aligned_cols=305 Identities=14% Similarity=0.090 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
....+.++++++++.|.+ .++++ +|+++++..++.++ +++||+ |+++.+.|++....+.
T Consensus 51 ~pt~~~L~~~lA~l~g~~---~~i~~-~sg~~Ai~~~l~~l---------------~~~GD~--Vl~~~~~y~~~~~~~~ 109 (386)
T PRK08045 51 NPTRDVVQRALAELEGGA---GAVLT-NTGMSAIHLVTTVF---------------LKPGDL--LVAPHDCYGGSYRLFD 109 (386)
T ss_pred CccHHHHHHHHHHHhCCC---eEEEE-CCHHHHHHHHHHHH---------------cCCCCE--EEEcCCCcHHHHHHHH
Confidence 334667999999999953 46776 45567788887766 578985 9999889987554443
Q ss_pred H----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 200 Q----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 200 ~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
. .|.+++.++ ..|+++++++++ +++++|++++++||||.+.|+++|.++|+++|+++++|++++.+
T Consensus 110 ~~~~~~gi~v~~vd-----~~d~e~l~~~l~-----~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 110 SLAKRGCYRVLFVD-----QGDEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred HHHhhCCeEEEEeC-----CCCHHHHHHhcc-----cCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 2 244666664 258999999887 57999999999999999999999999999999999999998877
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
.....+ .+ ++|+++.|++||++|+.+ .|++++++ ++. ..+.. ....
T Consensus 180 ~~~~pl-~~---gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~--~~l~~-------------------------~~~~ 228 (386)
T PRK08045 180 ALQNPL-AL---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV--TELAW-------------------------WANN 228 (386)
T ss_pred ccCCch-hh---CCCEEEeecceeccCCCCceeEEEEeCcHHHH--HHHHH-------------------------HHHh
Confidence 554333 22 789999999999998875 57766643 331 11100 0000
Q ss_pred cCCChh-HHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEE
Q 043646 353 NGGTPQ-IVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILS 416 (625)
Q Consensus 353 ~~gt~~-~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~ 416 (625)
...+.+ +.+. +..++ ...+...++..+.+..+.++|++.|.++ |+.|.- ..-+++++
T Consensus 229 ~g~~~~p~~~~l~~rgl-------~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s 301 (386)
T PRK08045 229 IGVTGGAFDSYLLLRGL-------RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLS 301 (386)
T ss_pred cCCCCCHHHHHHHHhhh-------ccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEE
Confidence 011111 1111 11111 1244556677777888999999888874 444320 12367888
Q ss_pred EEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCC
Q 043646 417 FLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKP 493 (625)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~ 493 (625)
|.+..+. -....+.+.| +.+.+.+.-|...+. |....+..+.++... ..|+.+
T Consensus 302 ~~~~~~~--------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi~~ 357 (386)
T PRK08045 302 FELDGDE--------------QTLRRFLGGL-SLFTLAESLGGVESLISHAATMTHAGMAPEARA---------AAGISE 357 (386)
T ss_pred EEecCcH--------------HHHHHHHHhc-cceeEeccCCCCceeEeCCCCcccccCCHHHHH---------hcCCCC
Confidence 8874211 0023455555 344444444432221 111111222221111 256778
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHH
Q 043646 494 GWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 494 g~iRis~~~~~t~edid~ll~aL~ 517 (625)
+.||+|+|.-..++-++.+.++|+
T Consensus 358 ~liR~svGlE~~~dl~~dl~~al~ 381 (386)
T PRK08045 358 TLLRISTGIEDGEDLIADLENGFR 381 (386)
T ss_pred CeEEEEeCcCCHHHHHHHHHHHHH
Confidence 999999997444444444444443
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-19 Score=192.51 Aligned_cols=339 Identities=13% Similarity=0.013 Sum_probs=206.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh---CCCCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL---GGGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~---g~~~~~~vift~sGtta 151 (625)
++.+.|+.+... ++++.+.+++.+.+...........|... .-..++|+.+++++ +++++ +|++| +|+++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~----~g~~~lr~aia~~~~~~~~~~d-~I~it-~Ga~~ 106 (402)
T TIGR03542 33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPE----QGYPFLREAIAENDYRGRIDPE-EIFIS-DGAKC 106 (402)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCC----CCCHHHHHHHHHHHHhcCCCHH-HEEEC-CCcHH
Confidence 456777766554 35677888887766432111111111111 12344666676654 56665 89998 89999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------eEEEEecCCCCCCCHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-----------EVVEIGLDDNGLLDIEA 220 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv~v~~~~~~~ld~~~ 220 (625)
++..+... +.+||+ |++..+.|+.+...++..|+ +++.++.+..+.++++
T Consensus 107 al~~l~~l----------------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 167 (402)
T TIGR03542 107 DVFRLQSL----------------FGSDNT--VAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPD- 167 (402)
T ss_pred HHHHHHHh----------------cCCCCE--EEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCC-
Confidence 89876443 357775 99999999999888888999 9999988653222222
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC-CCCcEE
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI-DGYDAI 292 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~-~~~D~v 292 (625)
+. .. .++++|++++++||||.+.+ +++|+++|++||+++|+|++++--. .+..+..... ...-++
T Consensus 168 ~~---~~----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~ 240 (402)
T TIGR03542 168 LP---EE----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIE 240 (402)
T ss_pred cc---cc----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEE
Confidence 11 11 46899999999999999988 6788999999999999999965311 1112211110 012355
Q ss_pred EEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh--cC-CChhHHHHHHHHHH
Q 043646 293 FLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE--NG-GTPQIVQMIRAALA 368 (625)
Q Consensus 293 ~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~--~~-gt~~~~~~~~aal~ 368 (625)
+.|++|.||.|+ .+|++++++++. ........ ....... .. +.+.+.+.+ +..
T Consensus 241 ~~SfSK~~g~pGlRiG~~i~~~~l~--~~~~~~~~-------------------~~~~~~~~~~~~~~s~~~q~~--~~~ 297 (402)
T TIGR03542 241 FRSFSKTAGFTGVRLGWTVVPKELT--YADGHSVI-------------------QDWERRQCTKFNGASYPVQRA--AEA 297 (402)
T ss_pred EecCccccCCCCcceEEEEecHHHh--hcchhhHH-------------------HHHHHHhhhcccCCCHHHHHH--HHH
Confidence 779999998665 489999988762 11000000 0000000 01 122222221 222
Q ss_pred HHHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 369 FWVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 369 ~~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
++ ...+ .....+..+..++++.+.|.+. ++++..+ .++.+.+.-.+. .++..++.+
T Consensus 298 ~l--~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~----~~~~f~~v~l~~--------------~~~~~~l~~ 356 (402)
T TIGR03542 298 AY--AGEGLQPILEAISYYMENARILRKALEAA-GFKVYGG----EHAPYLWVKTPE--------------GISSWDFFD 356 (402)
T ss_pred HH--cCcchhHHHHHHHHHHHHHHHHHHHHHhc-CceecCC----CceeEEEEECCC--------------CCCHHHHHH
Confidence 22 1111 2233444556677788888775 6666544 235555555442 234567888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.|.+++||.+++|..|+.. .++++||++. .++++++..++.|+++
T Consensus 357 ~l~~~~gv~v~pg~~f~~~---------------------------~~~~iRis~~--~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 357 FLLYQYHVVGTPGSGFGPS---------------------------GEGFVRFSAF--GKRENIVEACERIKEA 401 (402)
T ss_pred HHHHhCCEEEeCchhhCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHhh
Confidence 8777789999988765310 2489999974 3788888888888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=193.27 Aligned_cols=311 Identities=19% Similarity=0.174 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.+++++|.+ ..+++++|+ +++..++.++ +++||+ |+++...|++.
T Consensus 34 y~r~~~p~~~~le~~la~l~g~~---~a~~~~sG~-~Ai~~~l~~l---------------~~~gd~--Vl~~~~~y~~~ 92 (369)
T cd00614 34 YSRIGNPTVDALEKKLAALEGGE---AALAFSSGM-AAISTVLLAL---------------LKAGDH--VVASDDLYGGT 92 (369)
T ss_pred eECCCChhHHHHHHHHHHHHCCC---CEEEEcCHH-HHHHHHHHHH---------------cCCCCE--EEECCCCcchH
Confidence 34444566788999999999974 234444675 5677766665 478885 88998888887
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+ +..|++++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|+++||++|+++++|+
T Consensus 93 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~ 162 (369)
T cd00614 93 YRLFERLLPKLGIEVTFVDPD-----DPEALEAAIK-----PETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDN 162 (369)
T ss_pred HHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 6544 3568898888765 6889999887 579999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.+...-.+ .+ ++|+++.|++|+++|++. .|+++.++ ++. +.+...
T Consensus 163 t~~~~~~~~~~-~~---g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~--~~l~~~----------------------- 213 (369)
T cd00614 163 TFATPYLQRPL-EL---GADIVVHSATKYIGGHSDVIAGVVVGSGEALI--QRLRFL----------------------- 213 (369)
T ss_pred CCcchhcCChh-hh---CCcEEEeccceeccCCCCceEEEEEeCcHHHH--HHHHHH-----------------------
Confidence 99877542222 22 789999999999997753 58888876 542 111100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCC-------------CCCCcc
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNT-------------SVKRQA 413 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~-------------~~~~~~ 413 (625)
.+...++.+.... .+++. .....+...++..+++.++.++|.+.|++. +..|. ....++
T Consensus 214 --~~~~g~~~~p~~a-~~~l~----~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~ 286 (369)
T cd00614 214 --RLALGTILSPFDA-WLLLR----GLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGG 286 (369)
T ss_pred --HHhhCCCCCHHHH-HHHHc----CCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCce
Confidence 0000111121111 11111 112344455667778999999999988764 43331 012478
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
+++|.+..+. -....+.+.| +.+.+.+.-|...+. +.......+..+.. ...|
T Consensus 287 i~s~~l~~~~--------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~---------~~~g 342 (369)
T cd00614 287 VFSFELKGGL--------------EAAKKFLNAL-KLFSLAVSLGGVESLVEHPASMTHSQLPPEER---------AAAG 342 (369)
T ss_pred EEEEEeCCCH--------------HHHHHHHHcC-CcceEcccCCCCceeeeCCcccccccCCHHHH---------HhcC
Confidence 8888875211 0122344444 233333333332210 11111111111111 1246
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+.++.+|+|+|. ||++.+++-|+..+
T Consensus 343 ~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 343 ITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred CCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 778999999996 77888888777653
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=193.52 Aligned_cols=314 Identities=14% Similarity=0.066 Sum_probs=190.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
+.+++......+++++.+++++|++. .++|+ +|+ +++..++.++ +++||+ |+++...|.
T Consensus 37 ~~y~r~~~p~~~~L~~~lA~l~g~~~--~v~~~-sG~-~ai~~~l~al---------------~~~Gd~--Vl~~~~~~~ 95 (376)
T PRK06460 37 YRYSREANPTVLELTKKIVELENAEM--GVAFS-SGM-GAISTTALAL---------------LKPGNS--VLVHRDMFG 95 (376)
T ss_pred cceeCCCCccHHHHHHHHHHHhCCCc--EEEeC-CHH-HHHHHHHHHH---------------hCCCCE--EEEecCCcC
Confidence 33455556677889999999999853 57775 676 5677777666 578986 777765443
Q ss_pred h----hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEE
Q 043646 193 S----NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268 (625)
Q Consensus 193 s----~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~viv 268 (625)
. +...++..|++++.++.+. .+.+++.++ +++++|++++++||||.+.|+++|+++|+++|+++++
T Consensus 96 ~ty~~~~~~~~~~G~~v~~~~~~~-----~~~l~~~~~-----~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~viv 165 (376)
T PRK06460 96 RSYRFFTDYLKNWGVNVDASNPGS-----DNIIEKAKS-----KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIV 165 (376)
T ss_pred cHHHHHHHHHHhhCcEEEEECCCC-----HHHHHHhcC-----CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 2 2234566799998887652 334444433 5799999999999999999999999999999999999
Q ss_pred eccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 269 DFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 269 D~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
|++++.+.....+ .. +.|+++.|++|+++|+++ .|+++.++++. +.+...
T Consensus 166 Dea~~~~~~~~~l-~~---~~divv~S~sK~l~G~~~~~~G~~~~~~~l~--~~l~~~---------------------- 217 (376)
T PRK06460 166 DATFSTPINQKPL-EL---GADIVVHSASKFLAGHNDVIAGLAAGYGKLL--NVIDQM---------------------- 217 (376)
T ss_pred ECCcCccccCChh-hc---CCCEEEeecceeccCCCCceEEEEecCHHHH--HHHHHH----------------------
Confidence 9998865322222 12 679999999999987753 68888777652 111100
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCC--C-----------CCCc
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNT--S-----------VKRQ 412 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~--~-----------~~~~ 412 (625)
...+.....+..+. .++. .....+...++..++++++.+.|++.|.++ |+.|. + ...+
T Consensus 218 --~~~~g~~~~~~~a~--~~l~----~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g 289 (376)
T PRK06460 218 --RRTLGTSLDPHAAY--LTLR----GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFG 289 (376)
T ss_pred --HHhcCCCCCHHHHH--HHHh----chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCc
Confidence 00111111111111 1100 111234556677778999999998888763 44431 0 1347
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
+.++|.+..+. -....+.+.| +.+.+.+.-|..-. .|+......+..+... -.
T Consensus 290 g~~s~~~~~~~--------------~~~~~~~~~l-~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~---------~~ 345 (376)
T PRK06460 290 GVLSFEVNGGQ--------------ESALKVMKSL-KLIIPAQTLGGVNSVISHPATMSHRTLSLEERK---------IV 345 (376)
T ss_pred eEEEEEEcCcH--------------HHHHHHHHhC-CcceeccCCCCCceEEeCccccccccCCHHHHH---------hc
Confidence 78888875321 0122344444 23333333231111 0211111122211111 14
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
|+.++.||+|+|. ||.+.+++-|++.+.
T Consensus 346 gi~~~liR~svGl----E~~~dl~~dl~~al~ 373 (376)
T PRK06460 346 GITDSLLRLSVGI----EDVNDLIEDLDRALS 373 (376)
T ss_pred CCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 6778999999996 566666666665554
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-20 Score=195.72 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++.++++.|.+.. ++++ +| ++++..++.++ +++||+ |+++.+.|.+....+..
T Consensus 61 p~~~~Le~~lA~~~g~~~~--i~~~-sG-~~Ai~~~l~al---------------l~~Gd~--Vl~~~~~y~~t~~~~~~ 119 (388)
T PRK07811 61 PTRTALEEQLAALEGGAYG--RAFS-SG-MAATDCLLRAV---------------LRPGDH--IVIPNDAYGGTFRLIDK 119 (388)
T ss_pred ccHHHHHHHHHHHhCCCce--EEeC-CH-HHHHHHHHHHH---------------hCCCCE--EEEcCCCchHHHHHHHH
Confidence 3467799999999998743 6664 67 47788887776 578986 89999999876554433
Q ss_pred ----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 201 ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 201 ----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
.|++++.++. .|+++|+++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.++
T Consensus 120 ~~~~~gi~~~~~d~-----~d~e~l~~~i~-----~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 120 VFTRWGVEYTPVDL-----SDLDAVRAAIT-----PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPY 189 (388)
T ss_pred hCcCCCeEEEEeCC-----CCHHHHHHhcC-----cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 4778777765 38999999987 579999999999999999999999999999999999999998776
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
....+. . ++|++++|++|+++||++ .|+++++++.
T Consensus 190 ~~~p~~-~---gaDivv~S~sK~l~g~~~~~gG~vv~~~~~ 226 (388)
T PRK07811 190 LQQPLA-L---GADVVVHSTTKYIGGHSDVVGGALVTNDEE 226 (388)
T ss_pred cCCchh-h---CCcEEEecCceeecCCCCcEEEEEEECCHH
Confidence 543332 2 789999999999998865 4888876543
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=195.11 Aligned_cols=158 Identities=17% Similarity=0.176 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-- 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (625)
...+.+++.++++.|.+ ..+++++|+.+ +..++..+ +++||+ |+++...|+.....+
T Consensus 64 p~~~~Le~~lA~leg~~---~al~~~sG~~A-i~~al~~l---------------l~~GD~--Vlv~~~~y~~t~~~~~~ 122 (431)
T PRK08248 64 PTTDVFEKRIAALEGGI---GALAVSSGQAA-ITYSILNI---------------ASAGDE--IVSSSSLYGGTYNLFAH 122 (431)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCHHHH-HHHHHHHH---------------hCCCCE--EEEccCchhhHHHHHHH
Confidence 34667899999999964 34555566655 55554444 478886 888888887655443
Q ss_pred --HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 199 --RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 199 --~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
+..|++++.++.. |+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.+.
T Consensus 123 ~~~~~Gv~v~~vd~~-----d~e~l~~ai~-----~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~ 192 (431)
T PRK08248 123 TLPKLGITVKFVDPS-----DPENFEAAIT-----DKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPY 192 (431)
T ss_pred HHHhCCEEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccc
Confidence 4579999999863 8999999987 579999999999999999999999999999999999999988665
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEec
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISK 313 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~ 313 (625)
...++ ++ ++|+++.|+||++|+|+. +|.+++.+
T Consensus 193 ~~~pl-~~---gaDivv~S~tK~lgg~g~~~Gg~v~~~ 226 (431)
T PRK08248 193 LLRPI-EH---GADIVVHSATKFIGGHGTSIGGVIVDS 226 (431)
T ss_pred cCChh-Hc---CCCEEEEcCccccCCCCCceEEEEEeC
Confidence 44443 33 899999999999998874 77777743
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=193.84 Aligned_cols=303 Identities=17% Similarity=0.152 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-- 197 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-- 197 (625)
.....++++.+++++|++ .++++++|+. ++..++.++ +++||+ |+++...|.+....
T Consensus 53 ~p~~~~le~~la~l~g~~---~~~~~~sG~~-Ai~~al~al---------------~~~Gd~--Vl~~~~~~~~t~~~~~ 111 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAE---RAVATATGMS-AIQAALMTL---------------LQAGDH--VVASRSLFGSTVGFIS 111 (380)
T ss_pred CchHHHHHHHHHHHhCCC---cEEEECCHHH-HHHHHHHHH---------------hCCCCE--EEEecCCcchHHHHHH
Confidence 445778999999999984 3455646554 566655555 478886 88888777665433
Q ss_pred --HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 198 --WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 198 --~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
....|++++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|+++||++|+++++|++++.+
T Consensus 112 ~~~~~~g~~v~~v~~~-----d~~~l~~~i~-----~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~ 181 (380)
T TIGR01325 112 EILPRFGIEVSFVDPT-----DLNAWEAAVK-----PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATP 181 (380)
T ss_pred HHHHHhCCEEEEECCC-----CHHHHHHhcC-----CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 34569999998864 7889988886 57999999999999999999999999999999999999998755
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC-c-eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT-P-GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~-G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
.....+ +. ++|+++.|++|+++|++. + |+++.++++. +.+.... +..
T Consensus 182 ~~~~pl-~~---g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~--~~l~~~~-------------------------~~~ 230 (380)
T TIGR01325 182 VLQQPL-KL---GADVVVYSATKHIDGQGRVMGGVIAGSEELM--AEVAVYL-------------------------RHT 230 (380)
T ss_pred ccCCch-hh---CCCEEEeeccceecCCCCeEEEEEEeCHHHH--HHHHHHH-------------------------Hhh
Confidence 432222 22 789999999999998753 3 6777676652 2111100 001
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEEe
Q 043646 354 GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFLV 419 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~~ 419 (625)
.++.+.... .+.. ......+...++..+.+.++.+.|++.|+++ |+.|.- ...+++++|.+
T Consensus 231 g~~~~p~~a---~~~l--~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l 305 (380)
T TIGR01325 231 GPAMSPFNA---WVLL--KGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDV 305 (380)
T ss_pred CCCCCHHHH---HHHH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence 111111111 1111 1122234445566667888889999888775 333320 12367888887
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
. +.. ....+.+.| +.+.+.+.-|...+. |+......+.++... ..|+.++.|
T Consensus 306 ~-~~~--------------~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~li 360 (380)
T TIGR01325 306 A-DRA--------------AAWKVLDAV-ELVSITNNLGDAKSTITHPATTTHGRMQPEERA---------AAGIGDGLV 360 (380)
T ss_pred C-CHH--------------HHHHHHHcC-CcceEcccCCCCCeeeeCCCccCcccCCHHHHH---------hcCCCCCeE
Confidence 4 210 123455555 334444433332210 221111222221111 256778999
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 043646 497 RITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~ 518 (625)
|||+|. ||.+.+++-|++
T Consensus 361 R~svGl----E~~~dl~~dl~~ 378 (380)
T TIGR01325 361 RLSVGL----EDVDDLIADLKR 378 (380)
T ss_pred EEEecc----CCHHHHHHHHHh
Confidence 999996 556666665554
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=195.24 Aligned_cols=163 Identities=17% Similarity=0.106 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.++++.|+. . .|+|+ +|+++ +..++..+ +++||+ |++++.+|.+.
T Consensus 63 Y~r~~~pt~~~le~~la~l~g~~-~-~v~fs-SG~~A-i~~al~~l---------------l~~Gd~--VI~~~~~y~~t 121 (437)
T PRK05613 63 YSRLTNPTVEALENRIASLEGGV-H-AVAFA-SGQAA-ETAAILNL---------------AGAGDH--IVTSPRLYGGT 121 (437)
T ss_pred eeCccChHHHHHHHHHHHHhCCC-e-EEEeC-CHHHH-HHHHHHHh---------------cCCCCE--EEECCCccHHH
Confidence 44444566788999999999984 2 57776 78855 44544444 478885 99999999988
Q ss_pred HHH----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLS----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
... +...|+++++++ +. .|+++++++++ ++|++|+++++.|++|.+.|+++|+++||++|+++++|+
T Consensus 122 ~~~~~~~l~~~Gi~v~~vd-~~---~d~e~l~~~l~-----~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~ 192 (437)
T PRK05613 122 ETLFLVTLNRLGIEVTFVE-NP---DDPESWQAAVQ-----PNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDN 192 (437)
T ss_pred HHHHHHHHHhcCeEEEEEC-CC---CCHHHHHHhCC-----ccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEEC
Confidence 533 355799999997 32 27899999998 579999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEE
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLI 311 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v 311 (625)
+++.|... +...+ |+|++++|+||+++|++ ++|.+++
T Consensus 193 t~a~g~~~-~p~~~---GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 193 TIATAALV-RPLEL---GADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred CCcccccc-ChHHh---CCCEEEeeccceecCCCcceeEEEE
Confidence 99887653 22234 89999999999998764 4555555
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-18 Score=193.27 Aligned_cols=325 Identities=13% Similarity=0.034 Sum_probs=203.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhcc-CCCCceEEEEcCC
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL-RDEERWVVFLGPY 189 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~ 189 (625)
|....+..++.+.+.+++.+..|. +++ +|++| +|++++|..++.++ + .+||+ |+++.+
T Consensus 164 Y~~s~G~~~lReaIA~~~~~r~g~~~~pe-~I~iT-~Ga~~ai~~~~~~l---------------~~~~gd~--Vli~~P 224 (534)
T PLN02231 164 YSHSQGIKGLRDAIAAGIEARDGFPADPN-DIFLT-DGASPAVHMMMQLL---------------IRSEKDG--ILCPIP 224 (534)
T ss_pred cCCCCCcHHHHHHHHHHHHhccCCCCCcc-cEEEe-CCHHHHHHHHHHHh---------------ccCCCCE--EEEeCC
Confidence 333334555556666666555454 344 89998 89999999999887 3 36785 999999
Q ss_pred CCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccC---HHHHHHHHHHcC
Q 043646 190 EHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYG 263 (625)
Q Consensus 190 ~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g 263 (625)
.|+.+...++..|++++.++++++ +.+|+++|++++++.... .+++++++++|+||||.+.+ +++|+++|++||
T Consensus 225 ~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~ 304 (534)
T PLN02231 225 QYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEG 304 (534)
T ss_pred CChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 999998888999999999999863 589999999999742211 26899999999999999976 567899999999
Q ss_pred CEEEEeccCcCC-C----ccccCCCC----CC--CCCc-EEEEcCCCCC-CCCC-CceEEEE---eccccccCCCCCccc
Q 043646 264 GFACFDFAASGP-Y----VKINLRSR----NI--DGYD-AIFLATHKFL-GGPG-TPGILLI---SKALYQLGSSPPSTC 326 (625)
Q Consensus 264 ~~vivD~A~~~g-~----~~id~~~~----~~--~~~D-~v~~S~hK~l-ggp~-g~G~l~v---~~~~~~l~~~~p~~~ 326 (625)
+++++|+++.-- + ....+... +. .... +++.|++|.+ |-|+ .+|++++ ++++. +.+...
T Consensus 305 l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~--~~l~k~-- 380 (534)
T PLN02231 305 LVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVR--EQIYKV-- 380 (534)
T ss_pred CEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHH--HHHHHH--
Confidence 999999996521 1 11111111 00 0112 3455899966 4233 3799886 34441 111000
Q ss_pred CCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh----cC-------HHHHHHHHHHHHHHHHHhh
Q 043646 327 GGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY----IG-------YEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 327 ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~----~g-------~~~i~~~~~~l~~~l~~~L 395 (625)
. ....+++...+. +...++... .. .+.+.+..++.++.+.+.|
T Consensus 381 ----------------------~-~~~~~s~~~~Q~---~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L 434 (534)
T PLN02231 381 ----------------------A-SVNLCSNISGQI---LASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDAL 434 (534)
T ss_pred ----------------------H-hhhcCCChHHHH---HHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011122222222 111211110 01 1234566777788899999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEec--cCCCCCCccccccCCCC-CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVY--STTNSSPENMKIERNKP-LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~--~~~~~~~~~~~~~~~~~-l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
++++++++..+. ++.+.|.-. +....+ .....+ .....++..|+++.||.+.+|..|+...
T Consensus 435 ~~~~gi~~~~p~----Ggfylw~~l~lp~~~~~-----~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~------- 498 (534)
T PLN02231 435 NSLEGVTCNKAE----GAMYLFPRIHLPQKAIK-----AAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVP------- 498 (534)
T ss_pred hcCCCceecCCC----eeeEEeccccCcHHHHH-----HHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCC-------
Confidence 988888887653 455555211 110000 000000 1133466767777899999998875210
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++|+++. .++++++..++.|.++..+.
T Consensus 499 -------------------g~~~~Rit~~--~~~e~l~eal~RL~~~~~~~ 528 (534)
T PLN02231 499 -------------------GTWHFRCTIL--PQEDKIPAIVSRLTEFHKSF 528 (534)
T ss_pred -------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence 1357999984 58899999999888776553
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=192.83 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
.....+++++.+++++|.+ + .+++ ++|+. ++..++..+ +++||+ |+++...|.++...+
T Consensus 51 ~np~~~~lE~~lA~l~g~~-~-~l~~-~sG~~-Ai~~~l~~l---------------l~~GD~--Vlv~~~~y~~~~~~~ 109 (385)
T PRK08574 51 ENPTLRPLEEALAKLEGGV-D-ALAF-NSGMA-AISTLFFSL---------------LKAGDR--VVLPMEAYGTTLRLL 109 (385)
T ss_pred CCccHHHHHHHHHHHhCCC-c-EEEe-CCHHH-HHHHHHHHH---------------hCCCCE--EEEcCCCchhHHHHH
Confidence 3445677999999999974 2 4454 46654 565555554 578885 999999999887666
Q ss_pred H---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 199 R---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 199 ~---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
+ ..|++++.+. +|++++++++++ .++++|++++++||||.+.|+++|+++||++|+++++|++++.|
T Consensus 110 ~~~~~~g~~v~~~~------~d~~~l~~~i~~----~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~ 179 (385)
T PRK08574 110 KSLEKFGVKVVLAY------PSTEDIIEAIKE----GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATP 179 (385)
T ss_pred HHhhccCcEEEEEC------CCHHHHHHhcCc----cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 4 3588877764 257889998872 27999999999999999999999999999999999999999877
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK 313 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~ 313 (625)
.....+ .. ++|++++|++|+++||+. .|++++++
T Consensus 180 ~~~~~l-~~---GaDivv~S~sK~l~g~~d~~gG~vi~~~ 215 (385)
T PRK08574 180 LLYRPL-RH---GADFVVHSLTKYIAGHNDVVGGVAVAWS 215 (385)
T ss_pred ccCChh-hh---CCcEEEeeCceeecCCCCceeEEEEECc
Confidence 543323 22 789999999999998864 36566543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-19 Score=191.56 Aligned_cols=347 Identities=11% Similarity=0.020 Sum_probs=205.2
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh--CCCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL--GGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~--g~~~~~~vift~sGttaal 153 (625)
..+.|..+... ++++.+.+++.+.+.....+.....|....+..++.+.+.+++.+.. +++++ +|++| +|+.++|
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it-~Ga~~al 112 (409)
T PRK07590 35 KIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISAD-EIFIS-DGAKCDT 112 (409)
T ss_pred ceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChh-hEEEC-CCHHHHH
Confidence 45555544433 34567888887766432111111112122223444444444444443 44555 89998 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-----------EEEEecCCCCCCCHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-----------VVEIGLDDNGLLDIEALR 222 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-----------vv~v~~~~~~~ld~~~L~ 222 (625)
..+... +.+||+ |++..+.|+.+...++..|++ ++.++++.++.+.++ +
T Consensus 113 ~~l~~~----------------~~~gd~--V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~- 172 (409)
T PRK07590 113 GNILDI----------------FGPDNT--IAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPE-L- 172 (409)
T ss_pred HHHHHh----------------cCCCCE--EEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCccc-C-
Confidence 886543 468886 999999999998888888986 888998753322222 1
Q ss_pred HHHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC-CCCcEEEE
Q 043646 223 SQLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI-DGYDAIFL 294 (625)
Q Consensus 223 ~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~-~~~D~v~~ 294 (625)
.+ ++++++++++|+||||.+.+. ++|+++|++||+++++|++++.-. .+..+..... ...-+++.
T Consensus 173 ---~~----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~ 245 (409)
T PRK07590 173 ---PE----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFR 245 (409)
T ss_pred ---cc----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEe
Confidence 11 478999999999999999874 567888999999999999965211 1111211100 01235567
Q ss_pred cCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHHHHHHHHHH
Q 043646 295 ATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 295 S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~ 372 (625)
|++|.+|.|+ .+|++++++++. +.... +... .....+.. ..... .+.+.+.+.+ +..++
T Consensus 246 SfSK~~~~pGlRiG~~i~~~~li--~~~~~---~~~~---------~~~~~~~~-~~~~~~~~~s~~~q~a--~~~~l-- 306 (409)
T PRK07590 246 SFSKTAGFTGTRCAYTVVPKELK--GKTSD---GEGV---------SLNSLWNR-RQSTKFNGVSYIVQRA--AEAVY-- 306 (409)
T ss_pred cCccccCCcCceeEEEEcCHHHh--hhccc---cchh---------hhHHHHHH-HHhhcccCcCHHHHHH--HHHHh--
Confidence 9999997665 489999988772 21100 0000 00000000 00001 1222222221 11222
Q ss_pred hhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhh
Q 043646 373 EYIG---YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFND 449 (625)
Q Consensus 373 ~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 449 (625)
...+ .+.+.++.+..++++.+.|.+. ++++..+ .++.+.|...++ .++..++++.|.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~----~g~~f~wi~~~~--------------~~~~~~~~~~l~~ 367 (409)
T PRK07590 307 SPEGKAQIKELIDYYMENAKIIREGLESA-GFEVYGG----VNAPYIWVKTPD--------------GMSSWDFFDKLLQ 367 (409)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CcceEEEEECCC--------------CCCHHHHHHHHHH
Confidence 1112 2344556666677888888876 6666544 235555555442 1345677777777
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++||.+++|..|+.. ..+++||++. .++++++..++.|.++
T Consensus 368 ~~gv~v~pg~~f~~~---------------------------~~~~iRi~~~--~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 368 EANVVGTPGSGFGPS---------------------------GEGYFRLSAF--GSRENVLEAMERIKKA 408 (409)
T ss_pred HCCEEEeChhHhCCC---------------------------CCCEEEEEcc--CCHHHHHHHHHHHHhh
Confidence 789999988766310 2479999963 4789999999888754
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=190.94 Aligned_cols=307 Identities=16% Similarity=0.159 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--- 198 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--- 198 (625)
...++++.|++++|.+ .++++++|+.+ +..++.++ +++||+ |+++.+.|.+....+
T Consensus 65 ~~~~Le~~iA~~~g~~---~~l~~~sG~~A-i~~al~~l---------------l~~Gd~--Vl~~~~~y~~~~~~~~~~ 123 (400)
T PRK06234 65 TSTEVENKLALLEGGE---AAVVAASGMGA-ISSSLWSA---------------LKAGDH--VVASDTLYGCTFALLNHG 123 (400)
T ss_pred cHHHHHHHHHHHhCCC---cEEEEcCHHHH-HHHHHHHH---------------hCCCCE--EEEecCccchHHHHHHHH
Confidence 4567999999999974 34555466654 66555554 578985 888888887765443
Q ss_pred -HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCC
Q 043646 199 -RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGP 275 (625)
Q Consensus 199 -~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g 275 (625)
+..|++++.++.+ |+++++++++ +++++|++++|+||||.+.|+++|+++|+++ |+++++|++++.+
T Consensus 124 ~~~~G~~v~~vd~~-----d~e~l~~~i~-----~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 124 LTRYGVEVTFVDTS-----NLEEVRNALK-----ANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HhhCCeEEEEECCC-----CHHHHHHHhc-----cCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 5579999998864 7999999997 5799999999999999999999999999997 9999999998877
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
+....+ .. ++|+++.|++|++++++. .|++++++++. +.+... + . ...+.
T Consensus 194 ~~~~~l-~~---g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~--~~l~~~--~--~------------------~~~~g 245 (400)
T PRK06234 194 YIQRPL-QL---GADVVVHSATKYLNGHGDVIAGFVVGKEEFI--NQVKLF--G--I------------------KDMTG 245 (400)
T ss_pred hcCCch-hh---CCcEEEeeccccccCCCCceeEEEEecHHHH--HHHHHH--H--H------------------HHhcC
Confidence 543322 22 789999999999997763 48888887762 221100 0 0 00000
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------------CCCcceEEEEe
Q 043646 354 GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------------VKRQAILSFLV 419 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------------~~~~~i~~f~~ 419 (625)
....++.+. +... ...-.+.+.++..+++.++.+.|.+.|.+ +|+.|.- ...+++++|.+
T Consensus 246 ~~l~p~~a~----l~~~--~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l 319 (400)
T PRK06234 246 SVIGPFEAF----LIIR--GMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFEL 319 (400)
T ss_pred CCCCHHHHH----HHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEe
Confidence 111122111 1111 11223445556667788899999888877 3444320 12466888877
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
..+. -....+.+.| +.+++.+.-|...+. |.......+..+... ..|+.++.+
T Consensus 320 ~~~~--------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~l~ 375 (400)
T PRK06234 320 KGGV--------------EEGKVVMNNV-KLATLAVSLGDAETLIQHPASMTHSPYTAEERK---------EAGISDGLV 375 (400)
T ss_pred cCcH--------------HHHHHHHHhC-CcceEeccCCCCCceecCCccCCCCCCCHHHHH---------hcCCCCCeE
Confidence 4211 0124566666 456766666654331 211111122221111 146778999
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 043646 497 RITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~ 517 (625)
|||+|.-..++=++.+.++|+
T Consensus 376 R~svGlE~~~dl~~dl~~al~ 396 (400)
T PRK06234 376 RLSVGLEDVDDIIADLKQALD 396 (400)
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 999997544444444444444
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=192.89 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-- 197 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-- 197 (625)
....+++++.+++++|++. .+++ ++|+. ++..++..+ +++||+ |+++...|......
T Consensus 64 ~p~~~~le~~lA~l~g~~~--~i~~-~sG~~-Al~~~l~~l---------------l~~Gd~--Viv~~~~y~~t~~~~~ 122 (403)
T PRK07503 64 NPTLALLEQRMASLEGGEA--AVAL-ASGMG-AITATLWTL---------------LRPGDE--VIVDQTLYGCTFAFLH 122 (403)
T ss_pred CchHHHHHHHHHHHhCCCc--EEEE-cCHHH-HHHHHHHHH---------------cCCCCE--EEEccCccchHHHHHH
Confidence 3456779999999999853 3555 47765 577666655 578986 88888777654322
Q ss_pred --HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 198 --WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 198 --~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
++..|++++.++.+ |+++++++++ ++|++|++++++||||.+.|+++|+++|+++|+++++|++++.+
T Consensus 123 ~~~~~~G~~v~~vd~~-----d~~~l~~~i~-----~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 123 HGLGEFGVTVRHVDLT-----DPAALKAAIS-----DKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred HHHhhCCEEEEEeCCC-----CHHHHHHhcC-----ccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 34579999988864 7899999987 57999999999999999999999999999999999999999877
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
+....+. + ++|+++.|++|+++++++ .|+++.++++
T Consensus 193 ~~~~~l~-~---g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l 230 (403)
T PRK07503 193 YLQRPLE-L---GADLVVHSATKYLGGHGDITAGLVVGGKAL 230 (403)
T ss_pred ccCCchh-h---CCCEEEccccccccCCCceeEEEEEcCHHH
Confidence 5433332 2 789999999999998764 5887766665
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-19 Score=191.71 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
....+++++.|+++.|... .+ ++++|+ +++..++.++ +++||+ |+++...|+.....+.
T Consensus 57 ~pt~~~Le~~lA~l~g~~~--~l-~~ssG~-~Ai~~al~al---------------~~~Gd~--Vl~~~~~Y~~t~~~~~ 115 (425)
T PRK06084 57 NPTNDVLEQRVAALEGGVG--AL-AVASGM-AAITYAIQTI---------------AEAGDN--IVSVAKLYGGTYNLLA 115 (425)
T ss_pred CchHHHHHHHHHHHhCCCc--ee-EehhHH-HHHHHHHHHH---------------hCCCCE--EEEeCCCcchHHHHHH
Confidence 3445679999999999642 34 444666 6677777766 478886 7787777776555543
Q ss_pred H----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 200 Q----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 200 ~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
. .|+++.+++. .|+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.+
T Consensus 116 ~~l~~~gi~v~~~d~-----~d~e~le~ai~-----~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~ 185 (425)
T PRK06084 116 HTLPRIGIETRFAAH-----DDIAALEALID-----ERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATP 185 (425)
T ss_pred HhcccceeEEEEECC-----CCHHHHHHHhc-----cCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 3 4677776664 38999999997 57999999999999999999999999999999999999999877
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
.....+ .+ ++|+++.|++|+++|++. +|.+++.
T Consensus 186 ~~~~p~-~~---gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 186 VLCRPF-EH---GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred ccCChh-hc---CCCEEEECchhcccccccceeEEEEe
Confidence 653332 22 899999999999998864 4555554
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=187.85 Aligned_cols=333 Identities=13% Similarity=0.114 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
...+++++++++++|.+ +++++ +|++++|..++.+++ +++||+ |+++.++|+++..+++.
T Consensus 31 ~~~~~~e~~la~~~g~~---~~v~~-~sgt~al~~~l~~~~--------------~~~Gd~--Viv~~~t~~~~~~~~~~ 90 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSA---KVLLT-PSCTAALEMAALLLD--------------IQPGDE--VIMPSYTFVSTANAFVL 90 (375)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEE-CCHHHHHHHHHHHhC--------------CCCCCE--EEECCCCcHHHHHHHHH
Confidence 35677888999999884 67888 566777877666553 578886 99999999999999999
Q ss_pred cCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc
Q 043646 201 SLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279 (625)
Q Consensus 201 ~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i 279 (625)
.|++++.++++++ +.+|+++++++++ +++++|++++ ++|...++++|.++|+++|+++|+|+||+.+.. .
T Consensus 91 ~G~~~v~~d~d~~~~~~d~~~le~~i~-----~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~ 161 (375)
T PRK11706 91 RGAKIVFVDIRPDTMNIDETLIEAAIT-----PKTRAIVPVH---YAGVACEMDTIMALAKKHNLFVVEDAAQGVMST-Y 161 (375)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcC-----CCCeEEEEeC---CCCCccCHHHHHHHHHHcCCEEEEECccccccc-c
Confidence 9999999999875 4799999999987 5789888764 689999999999999999999999999998763 2
Q ss_pred cCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 280 NLRSRNIDGYDAIFLATH--KFLGGPGTPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
+-+..+. ..|+-++|+| |.++.+.| |++++++ ++. ..++.....|...... +. .....+ .....|+
T Consensus 162 ~~~~~g~-~~~~~~~Sf~~~K~l~~g~g-G~~~~~~~~~~--~~~~~~~~~g~~~~~~--~~-~~~~~~----~~~~~g~ 230 (375)
T PRK11706 162 KGRALGT-IGHIGCFSFHETKNYTAGEG-GALLINDPALI--ERAEIIREKGTNRSQF--FR-GQVDKY----TWVDIGS 230 (375)
T ss_pred CCeeeec-CcCEEEEeCCCCccccccCC-eEEEECCHHHH--HHHHHHHHcCCCcchh--hc-cCCCcc----eeeeccc
Confidence 2222211 2478888888 99974334 5566654 331 1121111111100000 00 000000 0011233
Q ss_pred hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc---EEEeCCCCCCCcceEEEEeccCCCCCCcccccc
Q 043646 357 PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN---IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE 433 (625)
Q Consensus 357 ~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g---v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~ 433 (625)
.....-+.+++... +....+.+.++.+++++++.+.|.++++ +++.............|.+.-..
T Consensus 231 ~~~~~~~~aa~~~~--ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 298 (375)
T PRK11706 231 SYLPSELQAAYLWA--QLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD---------- 298 (375)
T ss_pred ccCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC----------
Confidence 22222222332222 1122566777777888899999988762 44321111111112222221111
Q ss_pred CCCCCChHHHHHHhhhhcCeeeecCCCCCc--hhhHhh--hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 434 RNKPLHGPFVATLFNDLFGIQARGGCACAG--PYGHTL--LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 434 ~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~--l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
..+..++.+.|.+ +||.++....+.. +....+ ..-+-+.++++ ....+.+.++...+++|+
T Consensus 299 ---~~~r~~l~~~L~~-~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~-----------~~~~l~lP~~~~l~~~~~ 363 (375)
T PRK11706 299 ---LEDRSALINFLKE-AGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKE-----------SERLLRLPLFYNLTDVEQ 363 (375)
T ss_pred ---cCCHHHHHHHHHH-CCCCccccCCccCcchhhHhcCCCCCCChHHHHH-----------HhCcEeccCCCCCCHHHH
Confidence 1246789998965 7999875432211 111110 00011222222 246788999999999999
Q ss_pred HHHHHHHHHHH
Q 043646 510 EFILAALEFIA 520 (625)
Q Consensus 510 d~ll~aL~~~~ 520 (625)
++++++|++++
T Consensus 364 ~~i~~~i~~~~ 374 (375)
T PRK11706 364 RTVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-19 Score=190.77 Aligned_cols=306 Identities=16% Similarity=0.108 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
...+++++.++++.|. + .++++ +|++++|..++.++ +++||. |+++.+.|.++...+..
T Consensus 51 p~~~~le~~lA~l~g~--~-~v~~~-~gg~~Ai~~~l~al---------------l~~GD~--Vl~~~p~y~~~~~~~~~ 109 (382)
T TIGR02080 51 PTRDLLQQALAELEGG--A-GAVVT-NTGMSAIHLVTTAL---------------LGPDDL--LVAPHDCYGGTYRLLNA 109 (382)
T ss_pred chHHHHHHHHHHHhCC--C-cEEEE-cCHHHHHHHHHHHH---------------cCCCCE--EEEcCCCcHHHHHHHHH
Confidence 3456788999999984 3 57777 67888899988877 578885 88898999876554432
Q ss_pred ----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 201 ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 201 ----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
.|+++..++. .|+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.+.
T Consensus 110 ~~~~~~~~v~~~d~-----~d~~~l~~ai~-----~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~ 179 (382)
T TIGR02080 110 LAKKGCFRVLFVDQ-----GDEQALRAALA-----QKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA 179 (382)
T ss_pred HHhhcCeEEEEECC-----CCHHHHHHhcC-----cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 2466666542 37899999987 579999999999999999999999999999999999999988765
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
...++. . ++|+++.|++|+++|+.+ .|++++++... .+.+. ..+...
T Consensus 180 ~~~pl~-~---gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~-~~~l~--------------------------~~~~~~ 228 (382)
T TIGR02080 180 LQNPLA-L---GADLVLHSCTKYLNGHSDVIAGAVIAKDPQV-AEELA--------------------------WWANNL 228 (382)
T ss_pred cCCchh-h---CCCEEEeecceeccCCCCceeEEEEeCCHHH-HHHHH--------------------------HHHHcc
Confidence 433332 2 789999999999988765 57766654321 11110 000111
Q ss_pred C-ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEEe
Q 043646 355 G-TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFLV 419 (625)
Q Consensus 355 g-t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~~ 419 (625)
| +.+.... .+.. ....-.....++..+++..+.++|++.|.++ |+.|.- ..-+++++|.+
T Consensus 229 g~~~sp~~a---~l~l--r~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~ 303 (382)
T TIGR02080 229 GVTGGAFDS---YLTL--RGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFEL 303 (382)
T ss_pred CCCCCHHHH---HHHH--cccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 1 1111111 1111 0111223334555677888889998888875 444420 12467888887
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
..+. -....+.+.| +.+.+.+.-|..-+. |.......+.++.- ...|+.++.|
T Consensus 304 ~~~~--------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~---------~~~gi~~~li 359 (382)
T TIGR02080 304 KGGE--------------QTVRRFLGGL-SLFTLAESLGGVESLIAHPATMTHAAMGPEAR---------AEAGISDTLL 359 (382)
T ss_pred cCcH--------------HHHHHHHHcC-CcceEeccCCCCcceeECCCccCcccCCHHHH---------HhcCCCcCeE
Confidence 4211 0023455555 445555544432210 21111112221111 1256778999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~ 521 (625)
|||+|. ||++.+++-|++.++
T Consensus 360 RlsvGl----E~~~dl~~dl~~al~ 380 (382)
T TIGR02080 360 RLSVGL----EDADDLIADLEQGLR 380 (382)
T ss_pred EEEecc----CCHHHHHHHHHHHHh
Confidence 999996 566666666666553
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=190.58 Aligned_cols=302 Identities=14% Similarity=0.054 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH---
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--- 197 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (625)
.....+++.++++.|++ .++++ +|+++++..++.++ +++||+ |++++..|+.....
T Consensus 50 Pt~~~lE~~lA~l~g~~---~~~~~-~sG~~Ai~~al~al---------------l~~GD~--Vl~~~~~y~~t~~~~~~ 108 (377)
T TIGR01324 50 LTHFALQDAMCELEGGA---GCYLY-PSGLAAVTNSILAF---------------VKAGDH--VLMVDSAYEPTRYFCDI 108 (377)
T ss_pred ccHHHHHHHHHHHhCCC---cEEEE-CcHHHHHHHHHHHh---------------cCCCCE--EEEcCCCcHHHHHHHHH
Confidence 34567899999999974 45666 34566677776665 578986 88888787665432
Q ss_pred -HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 198 -WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 198 -~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
....|+++..++.+ +.++++++++ ++|++|++++++|++|.+.|+++|+++||++|+++++|++++.|+
T Consensus 109 ~~~~~gi~v~~~d~~-----~~e~l~~~i~-----~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~ 178 (377)
T TIGR01324 109 VLKRMGVDITYYDPL-----IGEDIATLIQ-----PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL 178 (377)
T ss_pred HHHhcCcEEEEECCC-----CHHHHHHhcC-----CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 23468888877543 2377888887 689999999999999999999999999999999999999999887
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
..-.+ .+ ++|+++.|.+||++|+.+ .|+++.+++.. ..+. ......
T Consensus 179 ~~~pl-~~---gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~--~~l~--------------------------~~~~~~ 226 (377)
T TIGR01324 179 LFKPL-EH---GVDISIQAGTKYLVGHSDIMIGTVVANARTW--DQLR--------------------------EHSYLM 226 (377)
T ss_pred ccCcc-cc---CceEEEecCceeccCCCCceEEEEEeCHHHH--HHHH--------------------------HHHHHh
Confidence 63322 23 899999999999998865 47777776552 1110 001112
Q ss_pred CC-hhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------------CCCcceEEE
Q 043646 355 GT-PQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------------VKRQAILSF 417 (625)
Q Consensus 355 gt-~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------------~~~~~i~~f 417 (625)
|+ .+.... +..+++. .....++....+..+.+.|.+.|.+ +++.|.- ...+++++|
T Consensus 227 G~~l~p~~a~~~~rgl~t-------l~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~ 299 (377)
T TIGR01324 227 GQMVDADDAYTTLRGLRT-------LGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSF 299 (377)
T ss_pred CCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEE
Confidence 22 111111 1111111 2233445555677788888887776 4555420 124678888
Q ss_pred EeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 418 LVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.+.... .-....+.+.| +.+++.+.-|...+.- ......+.... + . ..|+.++.||
T Consensus 300 ~l~~~~-------------~~~~~~~~~~l-~~~~~~~slG~~~sl~-~~~~~~~~~~~----~--~---~~~~~~~liR 355 (377)
T TIGR01324 300 VLQRLT-------------QKQVHAFLDHL-QLFGLGYSWGGYESLA-LCNQPELGHRP----N--I---KRNLEGPLIR 355 (377)
T ss_pred EECCCC-------------HHHHHHHHHhC-CcceEeccCCCcccee-ecCCCCCCHHH----H--H---hccCCCCEEE
Confidence 884311 01134677777 4567776665533210 00000111111 0 0 1234458999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 043646 498 ITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~ 520 (625)
+|+|.- |.+.+++-|++.+
T Consensus 356 ~svGlE----~~~dl~~dl~~al 374 (377)
T TIGR01324 356 VHIGLE----NVDDLKADLKAGF 374 (377)
T ss_pred EEeCCC----CHHHHHHHHHHHH
Confidence 999974 4555555555443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-19 Score=182.77 Aligned_cols=341 Identities=12% Similarity=0.092 Sum_probs=230.5
Q ss_pred CCCCcchHHHHHHHHHhhCCCCCC--CCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhc
Q 043646 84 TASGRSLRYIEDYIINNVLPFYGN--THTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMG 161 (625)
Q Consensus 84 ~~~~~~p~~v~ea~~~~l~~~~~n--~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~ 161 (625)
++-+..|+.|++++++.+..+.+. .-.+.++.+..+.++++++++.++++++.+.+.+|+|..+|.|.++..+...+
T Consensus 10 aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl- 88 (364)
T PRK12462 10 GGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF- 88 (364)
T ss_pred CCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc-
Confidence 334567899999999888654221 11123557788899999999999999999766678777777888888887766
Q ss_pred ccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecC----CCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 162 ITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLD----DNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~----~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
+.+|++..-++. ..+.+.. .-.+..| ++..+... ....++++.++ +. ++.+
T Consensus 89 --------------l~~g~~~~~~~~-tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~-----~d~~ 145 (364)
T PRK12462 89 --------------SRPGAAAPEYVT-TGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WD-----ARAP 145 (364)
T ss_pred --------------CCCCCcEEEEEe-CCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cC-----CCCc
Confidence 577876220233 3333332 1233445 55554321 12355666541 22 3578
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
.|.+++..+.||+..| ++.+.+++++++|++++++..++|+.++ |+++.+.+|.+| |.|++++++++++
T Consensus 146 ~v~~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~-----dvi~agsQKnlg-P~Gltvvivs~~a 214 (364)
T PRK12462 146 FRHYVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY-----GMVYAHAQKNLG-PAGVTVAIIRRAL 214 (364)
T ss_pred EEEEccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHHc-----cEEEeeccccCC-CCceEEEEECHHH
Confidence 9999999999999987 3344479999999999999999999864 999999999998 9899999999999
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhh-cCHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEY-IGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~-~g~~~i~~~~~~l~~~l~ 392 (625)
++...+..+ .. ..|...........||++..+. ..+++++. +. .|.+.+.++.++.++.++
T Consensus 215 --l~~~~~~~p--~~-----------ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~-~e~GGl~~~~~r~~~ka~~ly 278 (364)
T PRK12462 215 --LERVPDTLP--PM-----------LDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR-DEIGGVHAMRDINARKAAMLY 278 (364)
T ss_pred --HhhccccCC--ch-----------hhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHH
Confidence 433322111 01 0111111222334588888875 45666664 33 499999999999999999
Q ss_pred HhhCCCCcEEEeCCCCC-CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 393 GRILPNQNIQVLGNTSV-KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~-~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
+.+.+++++-...-... +..-+++|.+..+. + ...+.+.+ +++|+.--.|.
T Consensus 279 ~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~--------------l-~~~f~~~a-~~~gl~~lkGh------------ 330 (364)
T PRK12462 279 ATLDALNEVIDCHAHRAARSTMNVAFRFRQPR--------------L-DTLFKEQS-TEAGFCGLSGH------------ 330 (364)
T ss_pred HHHHhCCCcccCCCChhhcCcceEEEEcCCHH--------------H-HHHHHHHH-HHCCCccccCC------------
Confidence 99999876543322223 33446777654321 1 23455555 34677654332
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.. -|.+|+|+-..++.++++.|++.++++.++
T Consensus 331 -----------------r~--vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 331 -----------------RS--IGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred -----------------cc--cCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 11 266999998889999999999999987654
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=190.39 Aligned_cols=158 Identities=14% Similarity=0.073 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH----H
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS----W 198 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~----~ 198 (625)
...+++.|+++.+.. .++++ +|+++++..++.++ +++||+ |+++...|...... +
T Consensus 63 ~~~Le~~iA~le~~~---~~~~~-~sG~~Ai~~~l~al---------------l~~GD~--Vvv~~~~Y~~t~~l~~~~l 121 (394)
T PRK09028 63 HFAFQAAIVELEGGA---GTALY-PSGAAAISNALLSF---------------LKAGDH--LLMVDSCYEPTRDLCDKIL 121 (394)
T ss_pred HHHHHHHHHHHhCCC---cEEEE-CCHHHHHHHHHHHH---------------hCCCCE--EEEECCCcHHHHHHHHHhh
Confidence 456889999998764 45666 45666677776665 588996 88878788666532 2
Q ss_pred HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 199 RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 199 ~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
...|+++..++.+ +.+.++++++ ++|++|++++|+||||.+.|+++|+++||++|+++++|++++.|...
T Consensus 122 ~~~Gi~v~~v~~~-----~~e~l~~~l~-----~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~ 191 (394)
T PRK09028 122 KGFGIETTYYDPM-----IGEGIRELIR-----PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINS 191 (394)
T ss_pred hhcceEEEEECCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccC
Confidence 3468888877643 5677888886 68999999999999999999999999999999999999999887532
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
+.-++ |+|+++.|.|||++|+.. .|+++.+++.
T Consensus 192 -~Pl~~---GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~ 226 (394)
T PRK09028 192 -RPFEM---GVDISIQAATKYIVGHSDVMLGTATANEKH 226 (394)
T ss_pred -Ccccc---CceEEEEeCCeEecCCCCEEEEEEECCHHH
Confidence 22233 899999999999999964 3555444443
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=190.36 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
......++++.++++.|.+. .++ +++|+. ++..++. + +++||+ |+++.+.|.+....+
T Consensus 48 ~~p~~~~Le~~lA~l~g~~~--~~~-~~sG~a-ai~~~~~-~---------------l~~Gd~--Viv~~~~y~~~~~~~ 105 (377)
T PRK07671 48 GNPTRAALEELIAVLEGGHA--GFA-FGSGMA-AITAVMM-L---------------FSSGDH--VILTDDVYGGTYRVM 105 (377)
T ss_pred CChHHHHHHHHHHHHhCCCc--eEE-eCCHHH-HHHHHHH-H---------------hCCCCE--EEECCCccchHHHHH
Confidence 34557789999999999853 355 458875 5655543 2 478886 888888888655433
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|++++.++.. |+++++++++ +++++|++++|+||||.+.|+++|+++|+++|+++++|++++.
T Consensus 106 ~~~~~~~G~~v~~v~~~-----d~~~l~~ai~-----~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~ 175 (377)
T PRK07671 106 TKVLNRFGIEHTFVDTS-----NLEEVEEAIR-----PNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMT 175 (377)
T ss_pred HHHHhcCCeEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCc
Confidence 3469999988743 8999999997 5899999999999999999999999999999999999999876
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
++....+ .+ ++|+++.|++|+++||.+ .|+++++++.. .+.+.. .+..
T Consensus 176 ~~~~~p~-~~---g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l-~~~~~~-------------------------~~~~ 225 (377)
T PRK07671 176 PYWQSPI-SL---GADIVLHSATKYLGGHSDVVAGLVVVNSPEL-AEDLHF-------------------------VQNS 225 (377)
T ss_pred cccCChh-hh---CCeEEEecCcccccCCccceeEEEEeCcHHH-HHHHHH-------------------------HHHh
Confidence 5543222 22 789999999999998864 46666654321 111100 0001
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEE
Q 043646 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFL 418 (625)
Q Consensus 353 ~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~ 418 (625)
..+..+.... .+.. ..........++..+++..+.++|.+.|++. ++.|.- ...+++++|.
T Consensus 226 ~g~~~~~~~a---~l~~--~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~ 300 (377)
T PRK07671 226 TGGILGPQDS---WLLL--RGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFD 300 (377)
T ss_pred hcCCCCHHHH---HHHH--cCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEE
Confidence 1122211111 0111 0111133345566677888999999888874 444421 1236788887
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
+ .+. -....+...| +.+.+.+.-|...+. |....+..+..+... -.|+.++.
T Consensus 301 ~-~~~--------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi~~~l 355 (377)
T PRK07671 301 V-GSE--------------ETANKVLERL-QYFTLAESLGAVESLISIPSQMTHASIPADRRK---------ELGITDGL 355 (377)
T ss_pred e-CCH--------------HHHHHHHHhC-CcceEccCCCCCCeEeECCCccccccCCHHHHH---------hcCCCCCe
Confidence 7 221 0122344444 334444444443221 111111222221111 15777899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Q 043646 496 TRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~~ 519 (625)
||||+|. ||.+.+++-|+..
T Consensus 356 iR~svGl----E~~~dl~~dl~~a 375 (377)
T PRK07671 356 IRISVGI----EDGEDLIEDLAQA 375 (377)
T ss_pred EEEEecc----CCHHHHHHHHHHH
Confidence 9999996 5566666666554
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-19 Score=187.52 Aligned_cols=329 Identities=13% Similarity=0.071 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
...+++++.+++++|.+ .++.++|| |++|.+++.+++ +++||+ |++++.++++...++..
T Consensus 25 ~~~~~fE~~~a~~~g~~---~~~~~~sg-t~Al~~al~~l~--------------~~~gde--Vi~p~~t~~~~~~ai~~ 84 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK---YAVAVSSG-TSALHLALRALG--------------LGPGDE--VIVPAYTFPATASAILW 84 (363)
T ss_dssp HHHHHHHHHHHHHHTSS---EEEEESSH-HHHHHHHHHHTT--------------GGTTSE--EEEESSS-THHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCCh-hHHHHHHHHhcC--------------CCcCce--EecCCCcchHHHHHHHH
Confidence 45778899999999975 56777566 555888888885 678996 99999999999999999
Q ss_pred cCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc
Q 043646 201 SLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279 (625)
Q Consensus 201 ~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i 279 (625)
.|++++++++++ ++.+|+++++++|+ +++++|+++|.. |...|+++|.++|+++|++||.|+||+.|...-
T Consensus 85 ~G~~pv~~Di~~~~~~id~~~~~~~i~-----~~t~ai~~~h~~---G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~ 156 (363)
T PF01041_consen 85 AGAEPVFVDIDPETLNIDPEALEKAIT-----PKTKAILVVHLF---GNPADMDAIRAIARKHGIPLIEDAAQAFGARYK 156 (363)
T ss_dssp TT-EEEEE-BETTTSSB-HHHHHHHHH-----TTEEEEEEE-GG---GB---HHHHHHHHHHTT-EEEEE-TTTTT-EET
T ss_pred hccEEEEEeccCCcCCcCHHHHHHHhc-----cCccEEEEecCC---CCcccHHHHHHHHHHcCCcEEEccccccCceeC
Confidence 999999999995 78999999999999 689999988865 999999999999999999999999999987543
Q ss_pred cCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 280 NLRSRNIDGYDAIFLATH--KFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
+-..+ . .-|+.++|+| |.+....| |+++++++... +.++.+...|.... ....+.......+.....
T Consensus 157 g~~~G-~-~gd~~~fSf~~~K~i~~geG-G~v~~~~~~~~-~~~~~~~~~g~~~~-------~~~~~~~~~~~g~n~rm~ 225 (363)
T PF01041_consen 157 GRPVG-S-FGDIAIFSFHPTKIITTGEG-GAVVTNDPELA-ERARALRNHGRSRD-------AFRRYRHELPPGYNFRMS 225 (363)
T ss_dssp TEETT-S-SSSEEEEESSTTSSS-SSS--EEEEESTHHHH-HHHHHHTBTTEETS-------ECSTTEESSSS--B-B-B
T ss_pred CEecc-C-CCCceEecCCCCCCCcCCCC-eeEEecHHHHH-HHhhhhhccCcCcc-------ccccccccccCCcccccH
Confidence 32211 1 2388888875 99865555 88888875421 11111111110000 000000000001111112
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC-cceEEEEeccCCCCCCccccccCCC
Q 043646 358 QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKR-QAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~-~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
++ .+++... +..-.+.+.++.+++++++.+.|.+++++.......... .....|.+.-+. ..
T Consensus 226 ~~----~AAigl~--QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~-----------~~ 288 (363)
T PF01041_consen 226 EL----QAAIGLA--QLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPD-----------EA 288 (363)
T ss_dssp HH----HHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETC-----------CG
T ss_pred HH----HHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc-----------cc
Confidence 22 2222222 222356677777888999999999999987765433221 233233332221 11
Q ss_pred CCChHHHHHHhhhhcCeeeecCCC-CCc--hhhHhhh---cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCA-CAG--PYGHTLL---AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~-~~~--~~~~~~l---~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
..+...+.+.|.+ .||.++.... +-. +...... .-+-+.+..+ ....+.+.++..++++|++
T Consensus 289 ~~~rd~l~~~L~~-~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l-----------~~r~l~LP~~~~lt~edv~ 356 (363)
T PF01041_consen 289 LADRDELVEALRA-RGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERL-----------SQRLLSLPIHPRLTEEDVD 356 (363)
T ss_dssp CSTHHHHHHHHHH-TTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHH-----------HHHEEEEEHSTTSCHHHHH
T ss_pred cchHHHHHHHHHH-CCCcccccccCchhhhHHHHhcCccccCCCHHHHHH-----------HhCeEECcCCCCCCHHHHH
Confidence 1346789999966 6999987551 111 1101110 0011233322 2478999999999999999
Q ss_pred HHHHHHH
Q 043646 511 FILAALE 517 (625)
Q Consensus 511 ~ll~aL~ 517 (625)
+++++|+
T Consensus 357 ~I~~~ir 363 (363)
T PF01041_consen 357 YIAEAIR 363 (363)
T ss_dssp HHHHHHH
T ss_pred HHhhccC
Confidence 9999985
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=190.06 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--- 196 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--- 196 (625)
....+++++.++++.|+.. .++|+ +| ++++..++.++ +++||+ |+++...|++...
T Consensus 46 ~p~~~~lE~~la~leg~~~--~v~~s-sG-~~Ai~~~l~al---------------l~~Gd~--Vv~~~~~y~~t~~~~~ 104 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVG--TVCFA-TG-MAAIAAVFLTL---------------LRAGDH--LVSSQFLFGNTNSLFG 104 (397)
T ss_pred CHHHHHHHHHHHHHhCCCe--EEEeC-CH-HHHHHHHHHHH---------------cCCCCE--EEECCCccccHHHHHH
Confidence 4456779999999999863 46665 77 46677776665 578986 8888888876543
Q ss_pred HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 197 SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 197 ~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
.+...|++++.++.. |+++++++++ ++|++|++++++||||.+.|+++|+++||++|+++++|++++.++
T Consensus 105 ~l~~~G~~v~~v~~~-----d~e~l~~~l~-----~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 105 TLRGLGVEVTMVDAT-----DVQNVAAAIR-----PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred HHHhcCCEEEEECCC-----CHHHHHHhCC-----CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 355679999999863 7899999987 689999999999999999999999999999999999999988764
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
.++...+ ++|+++.|++|+++|++. +|.+++.
T Consensus 175 -~~~~~~~---gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 175 -LFRPKDV---GASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred -ccCcccc---CCEEEEecCeecccCCCCeEEEEEec
Confidence 2344344 899999999999998654 4555554
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=189.67 Aligned_cols=309 Identities=16% Similarity=0.139 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH---
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--- 197 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (625)
...+++++.++++.|.+ ..+++++|+.+ +..++.++ +++||+ |+++...|......
T Consensus 70 p~~~~le~~lA~l~g~~---~al~~~sG~~A-i~~~l~al---------------l~~Gd~--Vl~~~~~~~~t~~~~~~ 128 (403)
T PRK07810 70 PTVSMFEERLRLIEGAE---ACFATASGMSA-VFTALGAL---------------LGAGDR--LVAARSLFGSCFVVCNE 128 (403)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECChHHH-HHHHHHHH---------------hCCCCE--EEEccCCcchHHHHHHH
Confidence 34677999999999975 23444577766 44444444 478885 88887777554433
Q ss_pred -HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 198 -WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 198 -~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
++..|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.+.
T Consensus 129 ~~~~~G~~v~~vd~~-----d~~~l~~ai~-----~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~ 198 (403)
T PRK07810 129 ILPRWGVETVFVDGE-----DLSQWEEALS-----VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPL 198 (403)
T ss_pred HHHHcCcEEEEECCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 34569999999753 8999999997 579999999999999999999999999999999999999998776
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
....+ .. ++|++++|++|+++|.+. .|+++.+++... ..+... .+...
T Consensus 199 ~~~~~-~~---gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~-~~l~~~-------------------------~~~~g 248 (403)
T PRK07810 199 LQRGL-PL---GADVVVYSGTKHIDGQGRVLGGAILGDREYID-GPVQKL-------------------------MRHTG 248 (403)
T ss_pred cCChh-hc---CCcEEEccCCceecCCcCceeEEEEeChHHHH-HHHHHH-------------------------HHHhC
Confidence 53333 22 789999999999987653 477777766421 011000 00111
Q ss_pred CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEEec
Q 043646 355 GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFLVY 420 (625)
Q Consensus 355 gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~~~ 420 (625)
..++... +++... ...-.+.+.++..+++.++.++|++.|.+. |+.|.- ...+++++|.+.
T Consensus 249 ~~~s~~~---a~l~l~--~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~ 323 (403)
T PRK07810 249 PALSAFN---AWVLLK--GLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD 323 (403)
T ss_pred CCCCHHH---HHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc
Confidence 1111111 111111 222344555666777888889999988874 443310 123667888774
Q ss_pred cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
...+.. .-....+++.| +.+.+.+.-|...+. |....+..+..+... ..|+.++.+|
T Consensus 324 ~~~~~~----------~~~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~---------~~gi~~~lvR 383 (403)
T PRK07810 324 APEDAA----------KKRAFEVLDKL-RVIDISNNLGDAKSLITHPATTTHRAMGPEGRA---------AIGLGDGVVR 383 (403)
T ss_pred CCCCcC----------HHHHHHHHHhC-CceEEeccCCCCcceeeCCCccccccCCHHHHH---------hcCCCCCeEE
Confidence 311000 00013455555 344444444433221 111111122221111 1566789999
Q ss_pred EecCCCCCHHHHHHHHHHHHHH
Q 043646 498 ITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~ 519 (625)
||+|. |+++.+++-|++.
T Consensus 384 ~svGl----E~~~dli~dl~~A 401 (403)
T PRK07810 384 LSVGL----EDTDDLIADLDRA 401 (403)
T ss_pred EEecc----CCHHHHHHHHHHh
Confidence 99996 5666666666654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-19 Score=186.56 Aligned_cols=310 Identities=14% Similarity=0.048 Sum_probs=193.5
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC---CCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG---GQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~---~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
+.++.+.+++.+..... .|....+..++.+.+.+++.+..|. +++ +|++| +|++++|..++.++.
T Consensus 40 ~~~~~~~~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~-~I~it-~G~~~~i~~~~~~l~--- 107 (364)
T PRK07865 40 PVPPVIQEALAAAADAP-------GYPTTAGTPELREAIVGWLARRRGVTGLDPA-AVLPV-IGSKELVAWLPTLLG--- 107 (364)
T ss_pred CCCHHHHHHHHHHHhhC-------CCCCccCCHHHHHHHHHHHHHHcCCCCCCcc-cEEEc-cChHHHHHHHHHHHc---
Confidence 34567777775543210 1222223345566666777666564 355 89988 899999988877652
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+++||. |+++.+.|+.+...++..|++++.++ +++++.. .++++|++++++|
T Consensus 108 -----------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~-------~~~~l~~--------~~~~~v~~~~p~N 159 (364)
T PRK07865 108 -----------LGPGDV--VVIPELAYPTYEVGARLAGATVVRAD-------SLTELGP--------QRPALIWLNSPSN 159 (364)
T ss_pred -----------CCCCCE--EEECCCCcccHHHHHHhcCCEEEecC-------ChhhCCc--------ccceEEEEcCCCC
Confidence 468885 99999999999888888999988775 2233221 4689999999999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-cccCCCCC------CCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-KINLRSRN------IDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-~id~~~~~------~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
|||.+.+ +++|.++|+++|+++++|++++.-.. ...+..+. ...-.+++.|++|.|+.|+ .+|+++.++
T Consensus 160 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~ 239 (364)
T PRK07865 160 PTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP 239 (364)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH
Confidence 9999977 46788889999999999999763111 10011000 0012477889999997665 389998877
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
++. ..+... ........+.+.+. ++..++ .+....+..+++.+..++.+.+
T Consensus 240 ~~~--~~~~~~------------------------~~~~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~~~~~~~~~l~~ 290 (364)
T PRK07865 240 ALV--AELLEV------------------------RKHAGMMVPAPVQA--AMVAAL-GDDAHVREQRERYARRRAVLRP 290 (364)
T ss_pred HHH--HHHHHH------------------------HHhcCCCcCHHHHH--HHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Confidence 762 111000 00001112222221 122222 1212234555666667788888
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|.+. ++.+..+ .++.+.+...+. +..++.+.|. ++||.+++|..+...
T Consensus 291 ~L~~~-g~~~~~~----~~~~~~~~~~~~----------------~~~~~~~~l~-~~gv~v~pg~~f~~~--------- 339 (364)
T PRK07865 291 ALEAA-GFRVDHS----EAGLYLWATRGE----------------DCWDTVAWLA-ERGILVAPGDFYGPA--------- 339 (364)
T ss_pred HHHHc-CCcccCC----CccEEEEEeCCC----------------CHHHHHHHHH-HCCEEEeCccccCcC---------
Confidence 88775 6665544 234444333221 2346777774 579999988755311
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.++++||+++. +++++++.++.|+
T Consensus 340 ------------------~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 340 ------------------GAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred ------------------CCCEEEEEecC--CHHHHHHHHHHhh
Confidence 24899999974 6899999998875
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-18 Score=174.69 Aligned_cols=411 Identities=13% Similarity=0.064 Sum_probs=277.1
Q ss_pred cccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCC
Q 043646 33 RQTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTS 111 (625)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~ 111 (625)
.+.-+..++..+.|+. ++.++.++.+.+.+...-.++.+| +...|+..+.+-+ +++.-|...- .+.-+.
T Consensus 34 ~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP---~fhAyfpa~~s~~---siladmLs~~---i~~vGF- 103 (511)
T KOG0628|consen 34 KPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHP---HFHAYFPAGNSYP---SILADMLSGG---IGCVGF- 103 (511)
T ss_pred CcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCC---ceeeEccCccchH---HHHHHHHhcc---cccccc-
Confidence 3344556666666666 888999999999998888999998 6678887766555 3333332222 122222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhCCC---------CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC---
Q 043646 112 DSYVGQRMTKMVHEASNYIKRCLGGG---------QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE--- 179 (625)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~ia~~~g~~---------~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g--- 179 (625)
++..++..+++..-+..|++++++.+ ....|+. ++.+.+.+-.++.+.. ..+..++.+
T Consensus 104 tW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ-~tases~lvallaaR~---------~~i~~~k~~~p~ 173 (511)
T KOG0628|consen 104 TWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQ-GTASESVLVALLAART---------EKIEEIKSRPPE 173 (511)
T ss_pred eeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEe-cCcchhHHHHHHHHHH---------HHHHHhhcCCCc
Confidence 24456778889889999999998875 2214566 4777887777776652 222222222
Q ss_pred -------CceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC-CeEEEEecccCccccccC
Q 043646 180 -------ERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR-PMLGSFSACSNVTGIYSD 251 (625)
Q Consensus 180 -------d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~-~~lv~~~~~~n~TG~~~~ 251 (625)
.+.+++++++.|.|+.++....|.+++.++.+.+..++.+.|+++|.++...+- |..++.+-.++.+-.+++
T Consensus 174 ~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~ 253 (511)
T KOG0628|consen 174 LHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDE 253 (511)
T ss_pred ccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCcccccccc
Confidence 245788999999999999888899999999999889999999999998766553 678888888888888999
Q ss_pred HHHHHHHHHHcCCEEEEeccCcCCCc-cccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEecccccc--CCCCCccc
Q 043646 252 TRSIARLLHQYGGFACFDFAASGPYV-KINLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQL--GSSPPSTC 326 (625)
Q Consensus 252 l~~I~~la~~~g~~vivD~A~~~g~~-~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l--~~~~p~~~ 326 (625)
+++|..+|+++|+|+|||+|+++.+- ...++.+ +.+.+|.+.+++|||+..-..|..|++++..... -...|.+.
T Consensus 254 l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL 333 (511)
T KOG0628|consen 254 LEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYL 333 (511)
T ss_pred HHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhh
Confidence 99999999999999999999775432 2223322 3457899999999999777778899998874110 11233332
Q ss_pred CCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH-HHhhcCHHHHHHHH---HHHHHHHHHhhCCCCcEE
Q 043646 327 GGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW-VKEYIGYEVIKKQE---DVYIESALGRILPNQNIQ 402 (625)
Q Consensus 327 ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~-~~~~~g~~~i~~~~---~~l~~~l~~~L~~l~gv~ 402 (625)
-+....+.. +...+--+..+|| ++ +..| .....|.+.++++. .+|++.+.+.+.+-+.++
T Consensus 334 ~h~~~~~~~----Dyrhwqipl~rRf-----------RS-LKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE 397 (511)
T KOG0628|consen 334 KHAYQGSAP----DYRHWQIPLGRRF-----------RS-LKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFE 397 (511)
T ss_pred cchhhccCC----Cccccccccccch-----------hh-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcce
Confidence 211111000 0000001112222 22 4444 23445666555444 447888888888888999
Q ss_pred EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHH
Q 043646 403 VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRS 482 (625)
Q Consensus 403 v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~ 482 (625)
+..+. ..+.++|...+.. -..+.+..++++.-.|...+-.. +
T Consensus 398 ~~~~~---~lgLvcFRlk~~N--------------~~ne~Ll~~in~~g~i~l~~~~l------~--------------- 439 (511)
T KOG0628|consen 398 IVNKR---ILGLVCFRLKGDN--------------EINEALLNRLNSSGRIHLVPASL------H--------------- 439 (511)
T ss_pred eeccc---ccceeEEeecCCc--------------HHHHHHHHHHHhcCcEEEEEeee------c---------------
Confidence 98764 6888999886542 01345666666666666553211 0
Q ss_pred HHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhhhhc
Q 043646 483 AIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYGHRF 526 (625)
Q Consensus 483 ~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~~~~ 526 (625)
..-.+|+.+ ...++.+|+++..+.|.+.+.+..+.
T Consensus 440 ---------gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 440 ---------GKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred ---------ceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 236799998 47788999999999999988876544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=199.51 Aligned_cols=350 Identities=16% Similarity=0.123 Sum_probs=225.4
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA--DAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~--~~vift~sGttaa 152 (625)
...+.|+.+... ++|+.+.+++.+.+... +. . ....+..+.+++++++.+|.+.+ ++|+++ +|++++
T Consensus 697 ~~vI~LsinE~d~ppPp~V~eAi~eal~~~--~~-s------~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt-~Gs~el 766 (1082)
T PLN02672 697 SSLIHMDVDESFLPVPSAVKASIFESFVRQ--NI-S------ESETDPRPSILQFIKSNYGFPTDSCTEFVYG-DTSLAL 766 (1082)
T ss_pred CCEEEEeCCCCCCCCCHHHHHHHHHHHhhc--CC-C------CCChHHHHHHHHHHHHHhCcCCCCCCEEEEe-CCHHHH
Confidence 357888876554 56788999988766321 11 1 11234578899999999998754 367776 899999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||. |+++.+.|+.+...++..|++++.+|++. +..+|+++|+++++.
T Consensus 767 L~lll~aL---------------l~pGD~--VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~--- 826 (1082)
T PLN02672 767 FNKLVLCC---------------VQEGGT--LCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET--- 826 (1082)
T ss_pred HHHHHHHH---------------cCCCCE--EEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc---
Confidence 99888887 578986 99999999999989999999999999974 457899999999862
Q ss_pred CCCCeEEEEeccc-CccccccC---HHHHHHHHHHcCCEEEEeccCcCC-Cc--c---ccCCCC--CCCC-----CcEEE
Q 043646 231 AKRPMLGSFSACS-NVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV--K---INLRSR--NIDG-----YDAIF 293 (625)
Q Consensus 231 ~~~~~lv~~~~~~-n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g-~~--~---id~~~~--~~~~-----~D~v~ 293 (625)
.+.+++++++|+ ||||.+.+ +++|+++|++||+++|+|++++.- +. + .++.+. ..+. .-+++
T Consensus 827 -~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL 905 (1082)
T PLN02672 827 -VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALL 905 (1082)
T ss_pred -CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEE
Confidence 134588899997 99999976 567888899999999999997621 11 1 111110 0001 12455
Q ss_pred EcCCCCCCCCC-CceEEEEecc-ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHH
Q 043646 294 LATHKFLGGPG-TPGILLISKA-LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFW 370 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v~~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~ 370 (625)
.|++|.++.|+ .+|++++++. +. +.+... .. . .+..+..+.. .+++++.
T Consensus 906 ~SfSKkf~lpGLRIGylIap~~eLi--~~l~~~------------------------~~-~-s~~~~~~q~Aaaaalall 957 (1082)
T PLN02672 906 GGLSTELLSGGHEFGFLALNDSVLI--DAFHSA------------------------PG-L-SRPHSTLKYTIKKLLGLK 957 (1082)
T ss_pred eCcHHhhccHHHHheeEEeCCHHHH--HHHHHh------------------------hh-h-cCCCcHHHHHHHHHHHHH
Confidence 69999888665 3899998655 42 111100 00 0 0111112221 2222221
Q ss_pred HHhh----cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcccccc---CCCCCChHHH
Q 043646 371 VKEY----IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE---RNKPLHGPFV 443 (625)
Q Consensus 371 ~~~~----~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~---~~~~l~~~~v 443 (625)
..+. ......++..+..++++.+.|.+. ++++..+. ++.+.|...+......-+-... .+.+++..++
T Consensus 958 ~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~Pe----GGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~ef 1032 (1082)
T PLN02672 958 NQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQ----GGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNI 1032 (1082)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCC----cEEEEEEEccccccccccccccccccccCCCHHHH
Confidence 0000 012344455677788888999876 77776553 3455444321100000000000 0123567789
Q ss_pred HHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 444 ATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 444 ~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
++.|+++.||.+.+|.+|+ .++++||+++ .+++++++.++.|+++.
T Consensus 1033 ae~LLee~GVaV~PGs~FG-----------------------------~~g~~RIsfa--~~~e~LeeALerL~kf~ 1078 (1082)
T PLN02672 1033 REAILKSTGLCINSSSWTG-----------------------------IPGYCRFSFA--LEDSEFDRALKAIARFK 1078 (1082)
T ss_pred HHHHHHcCCEEEecCcccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 9999887899999997654 2489999998 37889999999998754
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=184.65 Aligned_cols=203 Identities=17% Similarity=0.168 Sum_probs=148.8
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
..+|+++.+.++.++.+.+++.+.+..+ .|... ....+. ....++.+++.+++++|++. .++| +||+.+ +..+
T Consensus 81 g~v~~tNlg~s~l~~~vieAv~~~~~~y-~~l~~-~l~~g~-~g~r~~~le~~lA~l~gae~--alvv-~sg~aA-i~l~ 153 (454)
T TIGR00474 81 GVVLHTNLGRAPLAEEAIEAVTDAARGY-SNLEY-DLETGK-RGSRYSHVEGLLCELTGAED--ALVV-NNNAAA-VLLA 153 (454)
T ss_pred CcEEeccCCCCCCCHHHHHHHHHHHhcc-cchhc-cccccc-cchHHHHHHHHHHHHhCCCc--EEEE-CCHHHH-HHHH
Confidence 4678888888899999999998888643 34321 111111 22446889999999999864 3555 466654 6655
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch----h--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS----N--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s----~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
+.. +.+|++ |+++..+|.. + ...++..|+++++++.+ +..++++++++|+
T Consensus 154 l~~----------------l~~Gde--VIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~---- 209 (454)
T TIGR00474 154 LNT----------------LAKGKE--VIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAIT---- 209 (454)
T ss_pred HHH----------------hCCcCE--EEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcC----
Confidence 544 367885 9998877632 1 22345679999999764 3458999999997
Q ss_pred CCCCeEEEEecccCcc--c--cccCHHHHHHHHHHcCCEEEEeccCcC---------CCccc--cCCCCCCCCCcEEEEc
Q 043646 231 AKRPMLGSFSACSNVT--G--IYSDTRSIARLLHQYGGFACFDFAASG---------PYVKI--NLRSRNIDGYDAIFLA 295 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~T--G--~~~~l~~I~~la~~~g~~vivD~A~~~---------g~~~i--d~~~~~~~~~D~v~~S 295 (625)
++|++|++.+++|++ | .+.|+++|+++||+||+++++|.+.+. ++.+. +...+ |+|++++|
T Consensus 210 -~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~---GaDiv~fS 285 (454)
T TIGR00474 210 -ENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAA---GVDLVTFS 285 (454)
T ss_pred -cCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHc---CCCEEEec
Confidence 689999999999984 6 478999999999999999999976321 22222 22223 89999999
Q ss_pred CCCCCCCCCCceEEEEeccc
Q 043646 296 THKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 296 ~hK~lggp~g~G~l~v~~~~ 315 (625)
+|||+|||. .|+++++++.
T Consensus 286 g~K~LgGp~-~G~i~g~~~~ 304 (454)
T TIGR00474 286 GDKLLGGPQ-AGIIVGKKEL 304 (454)
T ss_pred CccccCCCe-EEEEEECHHH
Confidence 999999997 5999999887
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-19 Score=189.08 Aligned_cols=316 Identities=14% Similarity=0.072 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.+++++|... ++++++|+ +++..++.++ +++||+ |+++...|..+
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~g~~~---~l~~~sG~-~Ai~~al~al---------------~~~GD~--Vl~~~~~Y~~~ 128 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALEGTEA---AYCTASGM-SAISSVLLQL---------------CSSGGH--VVASNTLYGGT 128 (418)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCe---EEEEccHH-HHHHHHHHHH---------------hCCCCE--EEEcCCcHHHH
Confidence 444445667889999999999863 45664555 5666666665 578986 88888887777
Q ss_pred HHHH-----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEe
Q 043646 195 LLSW-----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (625)
Q Consensus 195 ~~~~-----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD 269 (625)
...+ +..|++++.++.+ |+++++++++. +++++|++++++||||.+.|+++|+++||++|+++++|
T Consensus 129 ~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~----~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livD 199 (418)
T PLN02242 129 HALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVP----GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVD 199 (418)
T ss_pred HHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCc----CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEE
Confidence 5544 2368888777653 89999998872 25999999999999999999999999999999999999
Q ss_pred ccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 270 FAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 270 ~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
++++... .+...+ +.|+++.|++|++++++. .|+++.++++. ..+.....+
T Consensus 200 ea~~~~~--~~~~~~---g~divv~S~SK~l~g~g~~~gG~iv~~~~li--~~l~~~~~~-------------------- 252 (418)
T PLN02242 200 NTFAPMV--LSPARL---GADVVVHSISKFISGGADIIAGAVCGPAELV--NSMMDLHHG-------------------- 252 (418)
T ss_pred CCCCccC--CCHHHc---CCcEEEEeCccccCCCCCceEEEEEcCHHHH--HHHHHHhhh--------------------
Confidence 9986432 233333 689999999999987764 38888777662 222111000
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCC--C--------------CCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNT--S--------------VKR 411 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~--~--------------~~~ 411 (625)
.....|.+...+. +++... .....+.+.++..+.+.++.+.|.++ +++++.|. + ...
T Consensus 253 --~~~~~g~~~~~~~--A~l~~~--~l~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~ 325 (418)
T PLN02242 253 --ALMLLGPTMNPKV--AFELSE--RLPHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGF 325 (418)
T ss_pred --hhhccCCCCCHHH--HHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCc
Confidence 0011122111111 111111 11123444556677899999999988 46777542 0 123
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhc----CeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHH
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLF----GIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAI 484 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~----gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~ 484 (625)
+++++|.+.... ....+.+.| +.+ .+.+.-|..... |.......++.+...
T Consensus 326 g~~~sf~l~~~~---------------~~~~f~~~l-~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~------ 383 (418)
T PLN02242 326 GGLLCLDMDTEE---------------RANRLMRYL-QNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKA------ 383 (418)
T ss_pred eeEEEEEECCHH---------------HHHHHHHHh-hcccccceeeecCCCCCceeeCCCccccccCCHHHHH------
Confidence 567888773210 122344444 212 334444443321 222222222221111
Q ss_pred HhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 485 QKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 485 ~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..|+.++.||||+|.-. |++.+++-|++.+..
T Consensus 384 ---~~gi~~~liRlsvGlE~---~~~dli~dl~~al~~ 415 (418)
T PLN02242 384 ---AAGISPGLVRMSVGYTG---TLEQRWSQFEKALSA 415 (418)
T ss_pred ---hcCCCCCeEEEEecCCC---CHHHHHHHHHHHHHH
Confidence 25677899999999631 356666666655543
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=189.37 Aligned_cols=237 Identities=12% Similarity=0.067 Sum_probs=165.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+.+++.|+++-|+.. .++|. | .++++..++.++ +++||. |+++...|...
T Consensus 56 YsR~~nPt~~~le~~la~LEg~~~--a~~~~-S-GmaAi~~~~~~l---------------l~~GD~--Vv~~~~~Yg~t 114 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELEGGAG--CALYP-C-GAAAVANAILAF---------------VEQGDH--VLMTGTAYEPT 114 (395)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCe--EEEEh-H-HHHHHHHHHHHH---------------cCCCCE--EEEeCCCcHHH
Confidence 333334456678899999988752 35553 5 455577666655 578995 88888888777
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC--CEEEE
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG--GFACF 268 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g--~~viv 268 (625)
...+ +..|+++.+++. .|.+.++++|+ ++|++|++++++||+|.+.|+++|+++||++| ++++|
T Consensus 115 ~~l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~-----~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 115 QDFCSKILSKLGVTTTWFDP-----LIGADIAKLIQ-----PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred HHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcC-----CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 6554 446999999874 37889999997 68999999999999999999999999999984 99999
Q ss_pred eccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC--CceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 269 DFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG--TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 269 D~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
|.+++.|+. +++.++ |+|+++.|.|||++|+. +.|+++.+++.. ..+.
T Consensus 185 DnT~a~p~~-~~pl~~---GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~--~~l~------------------------ 234 (395)
T PRK08114 185 DNTWAAGVL-FKALDF---GIDISIQAGTKYLVGHSDAMIGTAVANARCW--EQLR------------------------ 234 (395)
T ss_pred ECCCccccc-cCHHHc---CCcEEEEcCcccccCCCcceeEEEEcCHHHH--HHHH------------------------
Confidence 999999887 777777 99999999999999996 467776665441 1110
Q ss_pred chhhhhcCCC-hhHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CC
Q 043646 347 DIEERENGGT-PQIVQMIRAALAFWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VK 410 (625)
Q Consensus 347 ~~~~~~~~gt-~~~~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~ 410 (625)
..+...|. .+... +|++ ....-...+.++..+.+..+.++|++.|.++ |+.|.- ..
T Consensus 235 --~~~~~~G~~~~p~~------a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g 306 (395)
T PRK08114 235 --ENSYLMGQMVDADT------AYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTG 306 (395)
T ss_pred --HHHHhccCCCCHHH------HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCC
Confidence 00111122 11111 1111 1112234445566677899999999998874 554420 12
Q ss_pred CcceEEEEec
Q 043646 411 RQAILSFLVY 420 (625)
Q Consensus 411 ~~~i~~f~~~ 420 (625)
.+++++|.+.
T Consensus 307 ~gg~~sf~l~ 316 (395)
T PRK08114 307 SSGLFSFVLK 316 (395)
T ss_pred CceEEEEEec
Confidence 4678888874
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-19 Score=189.13 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
.......+++.++++.|.+. .+++ +||+. ++..++.. +++||+ |++++..|++....+
T Consensus 48 ~~p~~~~Le~~la~l~g~~~--al~~-~SG~~-Al~~~l~~----------------l~pGd~--Vi~~~~~y~~t~~~~ 105 (380)
T PRK06176 48 GNPTRFALEELIADLEGGVK--GFAF-ASGLA-GIHAVFSL----------------FQSGDH--VLLGDDVYGGTFRLF 105 (380)
T ss_pred CChhHHHHHHHHHHHhCCCC--EEEE-CCHHH-HHHHHHHH----------------cCCCCE--EEEcCCChhHHHHHH
Confidence 33446779999999999753 4555 58876 56655543 478886 888888887765444
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|++++.++.. |+++++++++ +++++|++++|+||||.+.|+++|+++||++|+++++|++++.
T Consensus 106 ~~~~~~~gi~v~~vd~~-----d~e~l~~ai~-----~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~ 175 (380)
T PRK06176 106 DKVLVKNGLSCTIIDTS-----DLSQIKKAIK-----PNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT 175 (380)
T ss_pred HHHHHhcCeEEEEcCCC-----CHHHHHHhcC-----cCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccc
Confidence 3468888888753 8999999887 5899999999999999999999999999999999999999887
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEecc
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKA 314 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~ 314 (625)
++....+ .+ ++|++++|++|+++||.. .|+++.++.
T Consensus 176 ~~~~~p~-~~---gaDivv~S~tK~l~g~~d~~gG~vv~~~~ 213 (380)
T PRK06176 176 PYYQNPL-LL---GADIVVHSGTKYLGGHSDVVAGLVTTNNE 213 (380)
T ss_pred cccCCcc-cc---CCCEEEecCceeccCCccceeeEEEecHH
Confidence 6554333 23 889999999999998863 466666543
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-19 Score=185.80 Aligned_cols=309 Identities=14% Similarity=0.040 Sum_probs=192.4
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG---GGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g---~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.+.+++.+.... .. |....+..++.+++.+++.+.+| .+++ +|++| +|++.++..+..++.
T Consensus 33 ~~~~~~~~~~~~~~~~~-~~------Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~I~it-~G~~~~i~~~~~~l~-- 101 (357)
T TIGR03539 33 DPVPPLIRAALAAAADA-PG------YPQTWGTPELREAIVDWLERRRGVPGLDPT-AVLPV-IGTKELVAWLPTLLG-- 101 (357)
T ss_pred CCCCHHHHHHHHHHHhh-CC------CCcccCCHHHHHHHHHHHHHhcCCCCCCcC-eEEEc-cChHHHHHHHHHHHc--
Confidence 34456777777654321 11 11112235566667777766655 4455 89888 899999988877652
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEeccc
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACS 243 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~ 243 (625)
+++||. |+++.+.|+.+....+..|++++.++ +++.+ .. +++++|++++++
T Consensus 102 ------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~v~-------~~~~l----~~----~~~~~v~~~~p~ 152 (357)
T TIGR03539 102 ------------LGPGDT--VVIPELAYPTYEVGALLAGATPVAAD-------DPTEL----DP----VGPDLIWLNSPG 152 (357)
T ss_pred ------------CCCCCE--EEECCCCcHHHHHHHHhcCCEEeccC-------Chhhc----Cc----cCccEEEEeCCC
Confidence 478885 99999999999877888899887764 23322 21 478999999999
Q ss_pred CccccccC---HHHHHHHHHHcCCEEEEeccCcC-CCccccCCCCCC------CCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 244 NVTGIYSD---TRSIARLLHQYGGFACFDFAASG-PYVKINLRSRNI------DGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 244 n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~-g~~~id~~~~~~------~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
||||.+.+ +++|+++|++||+++++|++++. .+....+..+.. ..-.+++.|++|.++.|+- +|+++++
T Consensus 153 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~ 232 (357)
T TIGR03539 153 NPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGD 232 (357)
T ss_pred CCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecC
Confidence 99999987 56789999999999999999752 111111111100 0123677799999876653 7999887
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
+++.. .+... .... .+.+.+.+. ++.+++ ......+.++.+..+.++++
T Consensus 233 ~~~~~--~~~~~-------------------------~~~~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~~~~~~~~~~ 282 (357)
T TIGR03539 233 PALVA--ELLTV-------------------------RKHAGLMVPAPVQA--AMVAAL-GDDGHVAEQKARYAARRAQL 282 (357)
T ss_pred HHHHH--HHHHH-------------------------HhhcccCCCHHHHH--HHHHHc-CCHHHHHHHHHHHHHHHHHH
Confidence 77621 11100 0000 111222221 112222 12122345556666677788
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
.+.|.+. ++.+..+ .++++.+...+. +..++.+.|. ++||.+++|..++..
T Consensus 283 ~~~L~~~-g~~~~~p----~~~~~~~~~~~~----------------~~~~~~~~l~-~~gV~v~pg~~f~~~------- 333 (357)
T TIGR03539 283 KPALEKA-GFRIDHS----EAGLYLWATRGE----------------DAWDTVDRLA-ELGILVAPGDFYGPA------- 333 (357)
T ss_pred HHHHHHc-CCCCcCC----CccEEEEEECCC----------------CHHHHHHHHH-hCCEEECCccccCCC-------
Confidence 8888775 6665444 345555554321 2456777774 579999988765311
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
.++++||+++. ++++++..++.|
T Consensus 334 --------------------~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 334 --------------------GSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred --------------------CCCeEEEEecC--CHHHHHHHHHhh
Confidence 14799999974 678888888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=186.41 Aligned_cols=348 Identities=15% Similarity=0.095 Sum_probs=202.1
Q ss_pred CccccCCCCCCceEeccCCCCCc----chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCc
Q 043646 66 DVEFDYSFGKRRLTYADHTASGR----SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADA 141 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~~~----~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~ 141 (625)
+..+++.-| ..|+|.++... .++.|.+++.+++..+ ++.+...+ .+....+...++++.|+++++. . .
T Consensus 37 G~~~~d~~g---~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~-g~~~~~~~-~~~~~~~~~~~l~~~la~~~~~--~-~ 108 (402)
T PRK07505 37 GILITLADG---HTFVNFVSCSYLGLDTHPAIIEGAVDALKRT-GSLHLSSS-RTRVRSQILKDLEEALSELFGA--S-V 108 (402)
T ss_pred CccEEecCC---ceEEEeecCCccCCCCCHHHHHHHHHHHHHh-CCCCCCcc-chhhhhHHHHHHHHHHHHHhCC--C-E
Confidence 344555544 34788755443 3789999999988643 32222111 1123466789999999999987 3 5
Q ss_pred EEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHH
Q 043646 142 IIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIE 219 (625)
Q Consensus 142 vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~ 219 (625)
++++ +|++++...+-.+.. . .+.+++..+|+....+|.++. ..+...+.+++.+|.+ |++
T Consensus 109 ~~~~-sG~~a~~~ai~~~~~-~-----------~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d~~ 170 (402)
T PRK07505 109 LTFT-SCSAAHLGILPLLAS-G-----------HLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN-----DLD 170 (402)
T ss_pred EEEC-ChHHHHHHHHHHHHh-c-----------ccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----CHH
Confidence 6676 788875444422110 0 012233335666678888764 2344456788888753 899
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC-Ccc----ccCCCCC--CCCCcEE
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP-YVK----INLRSRN--IDGYDAI 292 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g-~~~----id~~~~~--~~~~D~v 292 (625)
+|+++++ +++++++++.++|+||.+.|+++|.++|++||+++|+|++|+.+ +.+ ....... .....++
T Consensus 171 ~l~~~~~-----~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~ 245 (402)
T PRK07505 171 ALEDICK-----TNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTII 245 (402)
T ss_pred HHHHHHh-----cCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEE
Confidence 9999886 46789999999999999999999999999999999999998642 111 1111111 1122466
Q ss_pred EEcCCCCCCCCCCceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHH
Q 043646 293 FLATHKFLGGPGTPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAF 369 (625)
Q Consensus 293 ~~S~hK~lggp~g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~ 369 (625)
+.|+.|.+++++ |++++ ++++. +.+..... ..+ ..++++..+.. .++++.
T Consensus 246 ~~s~sK~~~~~G--g~~~~~~~~~~--~~~~~~~~-~~t----------------------~~~~~~~~a~aa~~a~l~~ 298 (402)
T PRK07505 246 AASLGKAFGASG--GVIMLGDAEQI--ELILRYAG-PLA----------------------FSQSLNVAALGAILASAEI 298 (402)
T ss_pred EEechhhhhccC--eEEEeCCHHHH--HHHHHhCC-Cce----------------------eCCCCCHHHHHHHHHHHHH
Confidence 678999998553 67665 44442 11111000 000 11333333332 233333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhh
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFND 449 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 449 (625)
. .........++.++..+.+...+.. +......++..+.+... .....+.+.|.+
T Consensus 299 ~--~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~g~~~~i~~~~~~~~---------------~~~~~~~~~l~~ 353 (402)
T PRK07505 299 H--LSEELDQLQQKLQNNIALFDSLIPT--------EQSGSFLPIRLIYIGDE---------------DTAIKAAKQLLD 353 (402)
T ss_pred H--hccCcHHHHHHHHHHHHHHHHHHHh--------cCCCCCCCEEEEEeCCH---------------HHHHHHHHHHHH
Confidence 2 2222233333333333333222211 00011223322222110 013568888865
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.||.+++...+..+. .+.++||+++..+|++|+++++++|++++.++
T Consensus 354 -~Gi~v~~~~~p~~~~--------------------------~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 354 -RGFYTSPVFFPVVAK--------------------------GRAGLRIMFRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred -CCCeEeeecCCCCCC--------------------------CCceEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 699998653221110 13689999999999999999999999988765
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=166.34 Aligned_cols=350 Identities=12% Similarity=0.012 Sum_probs=234.1
Q ss_pred ceEeccCCC-----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-----CCCcEEEeC
Q 043646 77 RLTYADHTA-----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-----QADAIIFCG 146 (625)
Q Consensus 77 ~~~Yld~~~-----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-----~~~~vift~ 146 (625)
.++-|-++- ..+..+.+++|+.+.++.--+|. |..+ .-...+|+++|++++.+ ..+.|++|
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~----Yaps----~G~~~AR~AVAeYl~~~l~~kl~a~DV~lt- 132 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNG----YAPS----VGILPARRAVAEYLNRDLPNKLTADDVVLT- 132 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCC----cCCc----cccHHHHHHHHHHhhcCCCCccCcCceEEe-
Confidence 455555432 23456788899988886432332 1111 22455888888886654 22378998
Q ss_pred ChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHH
Q 043646 147 AGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQ 224 (625)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~ 224 (625)
+|.+++|..++.++. +||.. |+++.+.++-+..-.+-.|.+|+.+.+-+ ++.+|++.++++
T Consensus 133 sGC~qAIe~~i~~LA---------------~p~aN--ILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal 195 (447)
T KOG0259|consen 133 SGCSQAIELAISSLA---------------NPGAN--ILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEAL 195 (447)
T ss_pred ccchHHHHHHHHHhc---------------CCCCc--eecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHh
Confidence 899999999999883 68875 99999999988766777899999998743 679999999999
Q ss_pred HHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCc---CC-CccccCCCCCCCCCcEEEEcCC
Q 043646 225 LELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS---GP-YVKINLRSRNIDGYDAIFLATH 297 (625)
Q Consensus 225 l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~---~g-~~~id~~~~~~~~~D~v~~S~h 297 (625)
++ ++|.++++.+|+||+|.++. +++|+++|+++|+++|.|+++. +| .-.+.|..+...-+-+.+.+..
T Consensus 196 ~D-----ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggis 270 (447)
T KOG0259|consen 196 AD-----ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGIS 270 (447)
T ss_pred hc-----cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccc
Confidence 98 68999999999999999966 8899999999999999999954 11 2223344332212233345678
Q ss_pred CCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--
Q 043646 298 KFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY-- 374 (625)
Q Consensus 298 K~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~-- 374 (625)
|-.-.|+ .+|++++++..-.+.. +..... ...+-.-++....++++|+--++.+.
T Consensus 271 KrW~VPGWRlGWi~~hD~~gvf~~---------------------~~~~q~-~~~~~~~~~~p~TiiQ~AlP~IL~kTp~ 328 (447)
T KOG0259|consen 271 KRWIVPGWRLGWIALHDPRGVFRD---------------------TKVVQG-IKNFLDIIPGPATIIQGALPDILEKTPE 328 (447)
T ss_pred cccccCCceeeeEEEecccccccc---------------------hHHHHH-HHHHHhccCCccHhHHHHhHHHHHhChH
Confidence 8776676 4899999876411110 000000 11122223344445555555444221
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcEEE-eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQNIQV-LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~gv~v-~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
...+....-.+..++..+++|+++|++.. ..|. +..+.+.-..-. .+ ...-+..+++..|.++..+
T Consensus 329 efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPe----g~mylmv~l~~s--~~-------~~~~dD~dFc~kL~~Eesv 395 (447)
T KOG0259|consen 329 EFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPE----GCMYLMVKLNLS--LF-------PDIEDDVDFCQKLAREESV 395 (447)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCC----cceEEEeccchh--hh-------ccccccHHHHHHHhhhcce
Confidence 23445566777789999999999999984 3443 233332221100 00 0001234788888888999
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+-+|.+++ .++|+|++++ ...+.++..++.|++++...
T Consensus 396 ~~LPG~af~-----------------------------~~nw~Ri~i~--~~~~~leea~~Rik~Fc~RH 434 (447)
T KOG0259|consen 396 ICLPGQAFG-----------------------------LKNWLRIVIT--VEEEMLEEAFSRIKEFCDRH 434 (447)
T ss_pred EEecccccc-----------------------------CCCeEEEEEc--cChHHHHHHHHHHHHHHHhh
Confidence 999998876 3699999997 46789999999999887553
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=188.79 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH----
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS---- 197 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---- 197 (625)
....+++.++++.|.+. .+++++|+.+ +..++.++ +++||+ |+++...|.+....
T Consensus 64 ~~~~le~~lA~l~g~~~---al~~~SG~~A-i~~al~al---------------l~pGd~--VIv~~~~y~~t~~~~~~~ 122 (427)
T PRK05994 64 TNAVLEERVAALEGGTA---ALAVASGHAA-QFLVFHTL---------------LQPGDE--FIAARKLYGGSINQFGHA 122 (427)
T ss_pred cHHHHHHHHHHHhCCCc---EEEEcCHHHH-HHHHHHHH---------------hCCCCE--EEEecCcchhHHHHHHHH
Confidence 45678999999999863 3444466665 55555554 478886 88888888876544
Q ss_pred HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 198 WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
+...|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.++.
T Consensus 123 ~~~~G~~v~~vd~~-----d~~~l~~ai~-----~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~ 192 (427)
T PRK05994 123 FKSFGWQVRWADAD-----DPASFERAIT-----PRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL 192 (427)
T ss_pred HHhcCcEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 34579999988754 7899999987 5899999999999999999999999999999999999999987765
Q ss_pred cccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 278 KINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
...+ .+ ++|+++.|+||++|++++ +|.+++.
T Consensus 193 ~~pl-~~---gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 193 IRPI-EH---GADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred CCcc-cc---CCcEEEEcCccccCCCCCcEEEEEEe
Confidence 4333 23 899999999999998875 5666664
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-18 Score=173.67 Aligned_cols=336 Identities=20% Similarity=0.187 Sum_probs=218.2
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeC-ChHHH---HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCG-AGTTA---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH 191 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~-sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (625)
..+..+++.++++|+++..|.+ .|.+.. +|+.. +|..+ +..- + .-..+.|.+|++++..|
T Consensus 104 vqG~l~li~~Lq~~L~~ITG~D---avsLQP~AGAqGE~aGll~I-r~YH--------e----~rG~~~R~~~LIP~SAH 167 (496)
T COG1003 104 VQGYLELIYELQEWLKEITGMD---AVSLQPNAGAQGEYAGLLAI-RAYH--------E----SRGEGHRNICLIPDSAH 167 (496)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc---eeeccCCCCcchhhHHHHHH-HHHH--------H----HcCCCcCcEEEeecccc
Confidence 4567889999999999999986 444543 34443 33222 1110 0 01244567899999999
Q ss_pred chhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEec
Q 043646 192 HSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~ 270 (625)
..|-.+....|.+|+.|+.+++|.+|+++|++++. +++.++.+++|++ .|.+ .++.+|+++.|++|..|..|+
T Consensus 168 GTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~-----~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DG 241 (496)
T COG1003 168 GTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE-----DNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDG 241 (496)
T ss_pred CCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc-----cceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecC
Confidence 99999999999999999999999999999999998 6899999999864 5777 669999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-----CceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-----TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-----g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
|..-+.+.+ .++..+ |.|++-++.||.|..|. |.|-+.|++.+. |+.++.........+..+.....
T Consensus 242 ANlNA~vG~-~rPGd~-G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~------pfLP~p~~~~~~~~y~~~~~~~~ 313 (496)
T COG1003 242 ANLNAIVGL-ARPGDM-GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLA------PFLPGPVVYHDVGEYRLDYDGKK 313 (496)
T ss_pred cchhhhhcc-cccccc-ccceEEeecccccccCCCCCCCCCCceehHhhcc------ccCCCCcccCCCccccccCCCCc
Confidence 965433322 111111 89999999999995552 367788887762 22222110000000000000000
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCC
Q 043646 346 EDIEERENGGTPQIVQMIRAALAFWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 346 ~~~~~~~~~gt~~~~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
......--.|..+++-+ +..++. ....|.....+....+++|+.++|+. .+.+.-.. ..+..+-+..-..+
T Consensus 314 s~g~~~a~~Gs~~il~~---a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~-~~~~~HE~ild~r~-- 385 (496)
T COG1003 314 SIGVSAAPYGSASILPI---AWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTG-ENRVAHECILDARP-- 385 (496)
T ss_pred cceeeccccCcchHHHH---HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCC-CCcceeEEEeechH--
Confidence 00000111233333332 223331 13445666667777789999999986 34443221 11222222221111
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
..+.+++...+|+++|+| +|+...+-.++- - -.+.+-|-+.-.-
T Consensus 386 -------l~~~~Gv~~~DvAKrLlD-~GfHaPT~~FPl--------i--------------------V~~tLMIEPTEsE 429 (496)
T COG1003 386 -------LKKETGVRALDVAKRLLD-YGFHAPTMYFPL--------I--------------------VAGTLMIEPTESE 429 (496)
T ss_pred -------hHhhcCCcHHHHHHHHHh-cCCCCCcccCcc--------c--------------------cccceeecCCCCC
Confidence 134567889999999988 899987655531 1 1478899998889
Q ss_pred CHHHHHHHHHHHHHHHHhhhh
Q 043646 505 SNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~~ 525 (625)
+.+++|++++++.++..+..+
T Consensus 430 sk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 430 SKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988654
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-18 Score=180.10 Aligned_cols=308 Identities=15% Similarity=0.077 Sum_probs=198.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG---GGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g---~~~~~~vift~sGtta 151 (625)
...+.|+.+... ++|+.+.+++.+.+... ....|. .. ...++|+.++++++ .+++ +|++| +|+++
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~----~~~~Y~-~~----~~~~Lr~aia~~~~~~~~~~~-~i~it-~Ga~~ 87 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLNSD----TLRIYY-DS----PDEELIEKILSYLDTDFLSKN-NVSVG-NGADE 87 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhhhh----hhhcCC-CC----ChHHHHHHHHHHhCCCCCCcc-eEEEc-CCHHH
Confidence 456777765544 45678888887765320 000011 11 14457888888887 5555 88888 89999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~ 231 (625)
+|..++.++ ++ |++..++|+.+...++..|++++.+|++.++.++... +
T Consensus 88 ~i~~~~~~~-------------------d~--v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~------ 136 (335)
T PRK14808 88 IIYVMMLMF-------------------DR--SVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVN----V------ 136 (335)
T ss_pred HHHHHHHHh-------------------Cc--EEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChhH----c------
Confidence 999988764 23 8888999999998899999999999998776555321 2
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC--cccc-CCCCCCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY--VKIN-LRSRNIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~--~~id-~~~~~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
.+++++++++|+||||.+.+.+++.+++ ++++++++|+++.--. .... +... .--+++.|++|.++.|+ .+|
T Consensus 137 ~~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~---~~vi~~~S~SK~~~l~GlRvG 212 (335)
T PRK14808 137 GEGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKY---ENLAVIRTFSKAFSLAAQRIG 212 (335)
T ss_pred cCCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhC---CCEEEEEechhhccCcccceE
Confidence 2468999999999999999999999998 5899999999964211 1111 1111 12366679999998554 489
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
+++.++++. +.+.... ...+.+.+.+.+ ....+......+...+.....
T Consensus 213 ~~v~~~~~~--~~l~~~~--------------------------~~~~~~~~~q~a---~~~~l~~~~~~~~~~~~~~~~ 261 (335)
T PRK14808 213 YVVSSEKFI--DAYNRVR--------------------------LPFNVSYVSQMF---AKVALDHREIFEERTKFIVEE 261 (335)
T ss_pred EEEeCHHHH--HHHHHhc--------------------------CCCCCCHHHHHH---HHHHHhCHHHHHHHHHHHHHH
Confidence 999988773 2221100 001122222211 111111111123333444455
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ ++++..+. ++.+ +...+.. +..++.+.|.+ +||.++. |
T Consensus 262 r~~l~~~L~~~-g~~~~~~~----g~f~-~~~l~~~---------------~~~~~~~~l~~-~Gi~V~~---~------ 310 (335)
T PRK14808 262 RERMKSALREM-GYRITDSR----GNFV-FIFMEKE---------------EKERLLEHLRA-KNIAVRS---F------ 310 (335)
T ss_pred HHHHHHHHHHC-CCEECCCC----CeEE-EEeCCCc---------------cHHHHHHHHHH-CCeEEEE---C------
Confidence 67788888776 67766542 3333 4333321 24578888754 7999983 2
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++|||++ +.+++++++++|+++
T Consensus 311 -------------------------~~~~Risi~---~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 311 -------------------------REGVRITIG---KREENDMILKELEVF 334 (335)
T ss_pred -------------------------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence 156999998 889999999999753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=181.89 Aligned_cols=274 Identities=17% Similarity=0.136 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
.++++++++++|..+.++|++| +|++++|..+... +++|+ |++..+.|+.+...++..|+
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~-~Gs~e~i~~l~~~----------------~~~g~---v~v~~P~y~~y~~~~~~~g~ 115 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPV-AGSQAAIRALPAL----------------LPRGR---VGIAPLAYSEYAPAFARHGH 115 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEEC-cCHHHHHHHHHHh----------------cCCCe---EEEcCCCcHHHHHHHHHCCC
Confidence 5689999999999754488887 8999999877543 35654 77788899999888999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHH---HHHcCCEEEEeccCcCCCcccc
Q 043646 204 EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARL---LHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 204 ~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~l---a~~~g~~vivD~A~~~g~~~id 280 (625)
+++.++.+. + .+. ..++++++++|+||||.+.+.+++.++ |.+++.++++|+++.-......
T Consensus 116 ~~~~v~~~~------~----~~~-----~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s 180 (339)
T PRK06959 116 RVVPLDEAA------D----TLP-----AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAAS 180 (339)
T ss_pred EEEeecccc------h----hcc-----ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCccc
Confidence 999888653 1 122 246789999999999999887776665 5578999999999663221112
Q ss_pred CCCCCCCCC-cEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 281 LRSRNIDGY-DAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 281 ~~~~~~~~~-D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
+.... +.. -+++.|++|.||.|+ .+|+++.++++. +.+..... ..+...
T Consensus 181 ~~~~~-~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li--~~l~~~~~--------------------------~~~vs~ 231 (339)
T PRK06959 181 LAAHT-DRPGLVVLRSVGKFFGLAGVRAGFVLAAPALL--AALRDALG--------------------------AWTVSG 231 (339)
T ss_pred chhcc-CCCCEEEEecChhhcCCcchheEEEecCHHHH--HHHHHhcC--------------------------CCCCcH
Confidence 22211 111 266779999998564 489999988773 22211000 001111
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
+ .+.+...++.+..-.+..+++.+..++++.+.|+++ ++++.. .+++.+.-.+
T Consensus 232 ~---~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~------~~~f~~~~~~----------------- 284 (339)
T PRK06959 232 P---ARHAVRAAFADAAWQAAMRERLAADGARLAALLRAH-GFAVHA------TPLFSWTDDP----------------- 284 (339)
T ss_pred H---HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCccC------cceEEEEeCC-----------------
Confidence 1 122222222222223455677777788899999886 665531 1334333222
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+..++.+.|.+ +||.++. |. .++++||+++ .+++|+++++++|++
T Consensus 285 ~~~~l~~~l~~-~GI~vr~---~~-----------------------------~~~~lRisi~--~~~~e~~~l~~al~~ 329 (339)
T PRK06959 285 RAAALHAALAR-RGIWTRY---FA-----------------------------PPPSVRFGLP--ADEAEWQRLEDALAE 329 (339)
T ss_pred CHHHHHHHHHh-CCeEEEE---CC-----------------------------CCCeEEEECC--CCHHHHHHHHHHHHH
Confidence 14578888865 7999982 32 1378999983 277999999999998
Q ss_pred HHHhh
Q 043646 519 IAAYG 523 (625)
Q Consensus 519 ~~~~~ 523 (625)
+....
T Consensus 330 ~~~~~ 334 (339)
T PRK06959 330 CVPTL 334 (339)
T ss_pred HHHHH
Confidence 87654
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=187.30 Aligned_cols=292 Identities=14% Similarity=0.054 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--- 198 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--- 198 (625)
...++++.++++. ..+ .+++ ++|+. ++..++.++ +++||+ |+++...|+.....+
T Consensus 52 ~~~~Le~~lA~l~--~~~-~v~~-~sG~~-Ai~~~l~al---------------l~~Gd~--Vl~~~~~y~~~~~~~~~~ 109 (366)
T PRK07582 52 TWRALEAALGELE--GAE-ALVF-PSGMA-AITAVLRAL---------------LRPGDT--VVVPADGYYQVRALAREY 109 (366)
T ss_pred cHHHHHHHHHHHc--CCC-EEEE-CCHHH-HHHHHHHHh---------------cCCCCE--EEEeCCCcHhHHHHHHHH
Confidence 4567888999998 223 4555 47775 677776665 578886 888777776654332
Q ss_pred -HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC--C
Q 043646 199 -RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG--P 275 (625)
Q Consensus 199 -~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~--g 275 (625)
...|++++.++.++.+ + .+. +++++|++++++||||.+.|+++|+++||++|+++++|++++. +
T Consensus 110 l~~~G~~v~~v~~~~~~-------~-~~~-----~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~ 176 (366)
T PRK07582 110 LAPLGVTVREAPTAGMA-------E-AAL-----AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLG 176 (366)
T ss_pred HhcCeEEEEEECCCChH-------H-Hhc-----cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccc
Confidence 3469999999875321 1 222 4789999999999999999999999999999999999999753 3
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
..+++ + ++|+++.|+|||++|+.| .|+++++++.. .+.+.. .....
T Consensus 177 ~~p~~---~---g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l-~~~l~~-------------------------~~~~~ 224 (366)
T PRK07582 177 QRPLE---L---GADLVVASDTKALTGHSDLLLGYVAGRDPEL-MAAVER-------------------------WRLLA 224 (366)
T ss_pred cCchh---c---CCcEEEecccccccCCCCeeEEEEEcCcHHH-HHHHHH-------------------------HHHHh
Confidence 33443 2 789999999999998877 58888753321 111110 01111
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCC---CC----------CCcceEEEEe
Q 043646 354 GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNT---SV----------KRQAILSFLV 419 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~---~~----------~~~~i~~f~~ 419 (625)
..+++..... +... .....+.+.++..+++..+.++|.+.|.+. |..|. .. ..+++++|.+
T Consensus 225 g~~~~~~~a~---l~~r--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~ 299 (366)
T PRK07582 225 GAIPGPFEAW---LAHR--SLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFEL 299 (366)
T ss_pred CCCCCHHHHH---HHHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEe
Confidence 1222222211 1110 111233444666678889999999888874 44221 11 2578999988
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
. + ...+.+.+ +..++... +...++. +.+.. .... . ..+++++.||+|
T Consensus 300 ~-~-----------------~~~~~~~~-~~l~~~~~-~~s~G~~--~sl~~---------~~~~-~-~~~~~~~liR~s 346 (366)
T PRK07582 300 A-D-----------------AAAAERFV-AASRLVVA-ATSFGGV--HTSAD---------RRAR-W-GDAVPEGFVRLS 346 (366)
T ss_pred C-C-----------------HHHHHHHH-HhCCccee-cccCCCc--cchhh---------hHHH-c-CCCCCCCeEEEE
Confidence 4 1 33555555 33455443 2222210 01100 0000 0 123567899999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 043646 500 FPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~ 518 (625)
+|+.+.++.++.|.++|+.
T Consensus 347 vGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 347 CGIEDTDDLVADLERALDA 365 (366)
T ss_pred eccCCHHHHHHHHHHHHhh
Confidence 9999888888888888864
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-19 Score=176.84 Aligned_cols=322 Identities=12% Similarity=0.067 Sum_probs=209.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.+.+.+.+.+++.+.-. -+. ..++..+...++++++++++|. . .++|+.+||.++...|...
T Consensus 9 ~~g~~~~m~eam~~a~~-----~~~----~~YG~D~~~~~~e~~~ae~~g~--~-a~~Fv~sGT~aN~lal~~~------ 70 (342)
T COG2008 9 VAGPTPEMREALAAANA-----VGD----DVYGEDPTTNALEQRIAELFGK--E-AALFVPSGTQANQLALAAH------ 70 (342)
T ss_pred cCCCCHHHHHHHHhccc-----cCC----CCCCCCHHHHHHHHHHHHHhCC--c-eEEEecCccHHHHHHHHHh------
Confidence 34445577888765321 111 2234566788899999999998 3 6888889999977776554
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHc-CCeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCeEEEEec
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQS-LAEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPMLGSFSA 241 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~-G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv~~~~ 241 (625)
.+|++. |++.+..|.....+ .... ++....+....+|.+++++++..|..+. ....+.++++.+
T Consensus 71 ----------~~~~~~--vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~ 138 (342)
T COG2008 71 ----------CQPGES--VICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLEN 138 (342)
T ss_pred ----------cCCCCe--EEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEee
Confidence 378885 99999999877533 2222 3333333334689999999999887421 223445555555
Q ss_pred ccCccccccCH---HHHHHHHHHcCCEEEEecc---CcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 242 CSNVTGIYSDT---RSIARLLHQYGGFACFDFA---ASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 242 ~~n~TG~~~~l---~~I~~la~~~g~~vivD~A---~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
.+|.-|+++|+ ++|.++||++|+.+|+|+| .++.....+...+.. ++|+++++++|.++.|.| .+++.+.++
T Consensus 139 ~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~-~~D~v~~~~tK~g~~~~g-Aiv~gn~~~ 216 (342)
T COG2008 139 TATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKS-YVDSVSFCLTKGGGAPVG-AIVFGNRDF 216 (342)
T ss_pred ccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHh-hCCEEEEecccCCcceee-eEEEcCHHH
Confidence 56688999885 5678899999999999998 222223344444432 899999999999988886 777888777
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
.+ .... -++...|-..-..++++.....+.+ .-+.....|...+++++.+.|
T Consensus 217 ~~--~a~~-------------------------~rK~~Ggl~~k~r~laA~~~~~l~~-~~~~~~~~Han~mA~~La~~~ 268 (342)
T COG2008 217 AK--RARR-------------------------WRKRAGGLMRKARFLAAQGLYALED-DVWRLAADHANAMAARLAEGL 268 (342)
T ss_pred HH--HHHH-------------------------HHHHhcccHhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhh
Confidence 32 1100 0111122223333444444444333 224566778888899999999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
...||+++..+.. .+..|...+. ...+.|.. .|+..-.|..-.
T Consensus 269 ~~~~G~~~~~~~~----tN~vf~~l~~-------------------~~i~~l~~-~~~~~~~~~~~~------------- 311 (342)
T COG2008 269 EAKPGVKLAFPVE----TNMVFVRLPE-------------------SAIEALRL-AGALFYRGVLIG------------- 311 (342)
T ss_pred hhcCCceeccCCc----ccEEEEECCh-------------------HHHHHHHh-hchhheeeeecc-------------
Confidence 9889999987642 5566666553 12244422 344333221110
Q ss_pred hHHHHHHHHHhCCCCCCC-cEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 476 RSLEIRSAIQKGYLGVKP-GWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~-g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.. ..+|+..++.++++||+.++..++.++
T Consensus 312 ----------------~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 312 ----------------AHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred ----------------CCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 11 269999999999999999999999764
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-18 Score=181.55 Aligned_cols=333 Identities=16% Similarity=0.140 Sum_probs=202.3
Q ss_pred ccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..|+ -|+|..+. ++.++.+.+++.+.+.......+ .+ ......++.++++++++.+..+
T Consensus 35 ~~~~d~dg~---~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~--~~-----~~~~~~~la~~l~~~~~~~~~~ 104 (398)
T PRK03244 35 AVVWDVDGK---EYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSN--LF-----ATEPQIALAERLVELLGAPEGG 104 (398)
T ss_pred cEEEECCCC---EEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccC--cc-----CCHHHHHHHHHHHHhCCCCCCC
Confidence 444444443 37777552 45568999999888864311111 11 1123357889999998854323
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEI 208 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v 208 (625)
+++|+.+|+.+ +..++.+.. .+|++.+|.+.+.+|.+....+...|. ++..+
T Consensus 105 ~v~~~~sgsea-~~~al~~~~---------------~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (398)
T PRK03244 105 RVFFCNSGAEA-NEAAFKLAR---------------LTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHV 168 (398)
T ss_pred EEEEeCchHHH-HHHHHHHHH---------------HHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEe
Confidence 79998555544 555544331 234333455555555554444433332 22333
Q ss_pred ecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCcc--c--
Q 043646 209 GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVK--I-- 279 (625)
Q Consensus 209 ~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~--i-- 279 (625)
|. .|+++|++++. +++++|+++.++|++|.+.| +++|.++|++||+++|+|++++. |... .
T Consensus 169 ~~-----~d~~~l~~~~~-----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~ 238 (398)
T PRK03244 169 PY-----GDVDALAAAVD-----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAH 238 (398)
T ss_pred CC-----CCHHHHHHhhc-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhh
Confidence 32 37899998885 57899999999999999987 88999999999999999999762 2111 1
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
..... .+|++++ .|++++...+|++++++++ .+.+.+...+ .+ + .+.+..
T Consensus 239 ~~~~~---~pDi~t~--sK~l~~G~~ig~~~~~~~~--~~~~~~~~~~-~t---------------------~-~~~~~~ 288 (398)
T PRK03244 239 QHDGV---TPDVVTL--AKGLGGGLPIGACLAFGPA--ADLLTPGLHG-ST---------------------F-GGNPVA 288 (398)
T ss_pred hhhCC---CCCEEEE--chhhhCCcccEEEEEcHHH--HhhccCCCCc-CC---------------------C-CCCHHH
Confidence 11111 4687766 4999855568999999887 2333211100 00 0 122322
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
..++.++++.+ + .+.+.++.+++.+++++.|+++. ..++... ...+.++.+.+ +.. .
T Consensus 289 ~aaa~a~l~~~--~---~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~v-~g~g~~~~i~~-~~~---------------~ 345 (398)
T PRK03244 289 CAAALAVLDTI--A---SEGLLENAERLGEQLRAGIEALG-HPLVDHV-RGRGLLLGIVL-TAP---------------V 345 (398)
T ss_pred HHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHhcC-CCceeeE-eeccEEEEEEE-ecc---------------H
Confidence 22233334333 1 23466788888888999998752 2111111 11233444433 211 1
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+.+.|.+ +||.+++. .++.+||+++..++++|+++++++|+++
T Consensus 346 ~~~~~~~l~~-~Gv~~~~~---------------------------------~~~~iR~~p~~~~t~~~i~~~~~~l~~~ 391 (398)
T PRK03244 346 AKAVEAAARE-AGFLVNAV---------------------------------APDVIRLAPPLIITDAQVDAFVAALPAI 391 (398)
T ss_pred HHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 4567777755 79998742 1367999999999999999999999998
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 392 l~~ 394 (398)
T PRK03244 392 LDA 394 (398)
T ss_pred HHh
Confidence 865
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-18 Score=185.21 Aligned_cols=308 Identities=16% Similarity=0.153 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 117 QRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
.+...+.+.+.+++....|.. ++ +|++| +|++++|.++++++ ++|||. |++..++|+..
T Consensus 132 ~G~~~LR~~ia~~l~~~~g~~~~~~-~IiiT-~G~q~al~l~~~~l---------------~~pGd~--v~vE~PtY~~~ 192 (459)
T COG1167 132 AGLPELREAIAAYLLARRGISCEPE-QIVIT-SGAQQALDLLLRLL---------------LDPGDT--VLVEDPTYPGA 192 (459)
T ss_pred CCcHHHHHHHHHHHHHhcCCccCcC-eEEEe-CCHHHHHHHHHHHh---------------CCCCCE--EEEcCCCcHHH
Confidence 345566666666666555554 44 89999 89999999999988 689995 99999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe-EEEEecccCccccccCH---HHHHHHHHHcCCEEEEec
Q 043646 195 LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM-LGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~-lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~ 270 (625)
...++..|++++.||+|++| +|+++|++.+.. .++| +.+.++.+||||..++. ++|.++|++||+++|.|.
T Consensus 193 ~~~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~----~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 193 LQALEALGARVIPVPVDEDG-IDPEALEEALAQ----WKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred HHHHHHcCCcEEecCCCCCC-CCHHHHHHHHhh----cCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 99999999999999999655 799999999985 3677 55567888999999997 469999999999999999
Q ss_pred cCcCC----CccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AASGP----YVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~~g----~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
..+.- .-+..+..+...+--+++.||+|.+.....+|++++++++.+ .+.
T Consensus 268 ~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~--~~~------------------------ 321 (459)
T COG1167 268 YYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIE--KLL------------------------ 321 (459)
T ss_pred cchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHH--HHH------------------------
Confidence 85521 112123333333556888999999983346999999988632 110
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHhhCCC-C-cEEEeCCCCCCCcceEEEEec
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGY----EVIKKQEDVYIESALGRILPN-Q-NIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~----~~i~~~~~~l~~~l~~~L~~l-~-gv~v~~~~~~~~~~i~~f~~~ 420 (625)
........+++.+.+. +++.++. ..++ ..++.......+.+.+.|.+. + .+++..| .++.+.+...
T Consensus 322 ~~k~~~~~~~s~~~Q~---~la~~l~-~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p----~gG~flwl~l 393 (459)
T COG1167 322 RLKQAADLGPSSLSQA---ALAAFLL-SGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRP----EGGLFLWLEL 393 (459)
T ss_pred HHHHHhcCCCChHHHH---HHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC----CceEEEEEEc
Confidence 0011223344444432 2222222 1122 355555566677777788764 3 5566655 3466666666
Q ss_pred cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
++ +++...+.+.+.+ +||.+.+ |..|..... ..+++|++
T Consensus 394 ~~--------------~~~~~~l~~~a~~-~gv~i~~~g~~f~~~~~-------------------------~~~~~Rl~ 433 (459)
T COG1167 394 PE--------------GIDARELLAAALE-KGVVVTPLGSAFSADGD-------------------------PRNGLRLS 433 (459)
T ss_pred CC--------------CCCHHHHHHHHHH-CCCEEEcCCccccCCCC-------------------------CCCeEEEE
Confidence 54 2456677777755 6999988 877652110 24689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++. .+++++++.++.|..++.+.
T Consensus 434 ~s~-~~~e~i~~gi~~l~~~~~~~ 456 (459)
T COG1167 434 FSS-PSEEEIEEGIKRLAALLREA 456 (459)
T ss_pred cCC-CCHHHHHHHHHHHHHHHHHH
Confidence 975 45899999999998887653
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-18 Score=179.56 Aligned_cols=273 Identities=17% Similarity=0.123 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
.++++.|++++|. + +|++| +|++++|..++. +.+||+ |++..+.|+.+...++..|+
T Consensus 52 ~~Lr~~ia~~~~~--~-~I~it-~Gs~~al~~~~~-----------------~~~gd~--v~v~~P~y~~~~~~~~~~g~ 108 (330)
T PRK05664 52 DGLEAAARAYYGA--P-QLLPV-AGSQAAIQALPR-----------------LRAPGR--VGVLSPCYAEHAHAWRRAGH 108 (330)
T ss_pred HHHHHHHHHHhCC--C-CEEEC-cCHHHHHHHHHH-----------------ccCCCE--EEEcCCChHHHHHHHHHcCC
Confidence 4578999999985 3 78887 899999988743 357885 99999999999988999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHH---HHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 204 EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 204 ~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~---~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
+++.++++ ++++++. +++++++++|+||||.+.+.+ +|+++|+++|+++++|+++........
T Consensus 109 ~~~~v~~~--------~~~~~~~------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s 174 (330)
T PRK05664 109 QVRELDEA--------EVEAALD------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHS 174 (330)
T ss_pred eEEEechh--------hHhhhhc------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCccc
Confidence 99999753 3455443 578899999999999998854 556667889999999999653221112
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
+..+....--+++.|++|.+|.|+ .+|++++++++.+ .+.... ...+....
T Consensus 175 ~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~--~~~~~~--------------------------~~~~~~~~ 226 (330)
T PRK05664 175 LAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLR--ALAELL--------------------------GPWTVSGP 226 (330)
T ss_pred ccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHH--HHHHhc--------------------------CCCCCCHH
Confidence 222211111266779999998665 4899999877632 211000 00011111
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.+. ++..+ +.+....+..+++....++++.+.|.++ +++..+ ..+++.+...+ +
T Consensus 227 ~~~--~~~~~-L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~-----~~~~f~~~~~~-----------------~ 280 (330)
T PRK05664 227 TRW--LAQAA-LADTPWQRRQRERLLAASQRLAALLRRH-GLTPAG-----GCALFQWVRTE-----------------D 280 (330)
T ss_pred HHH--HHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC-----CcceEEEEecC-----------------C
Confidence 111 11112 1121223455666666788888888876 443211 11233333221 2
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|. ++||.++. |. .++++||+++. +.+++++++++|+.+
T Consensus 281 ~~~~~~~l~-~~gi~v~~---f~-----------------------------~~~~iRis~~~--~~~~~~~l~~al~~~ 325 (330)
T PRK05664 281 AAALHEFLA-RRGILTRL---FE-----------------------------QPASLRFGLPA--DEADWARLDQALLAY 325 (330)
T ss_pred HHHHHHHHH-HCCeEEEE---CC-----------------------------CCCeEEEECCC--CHHHHHHHHHHHHHH
Confidence 457888885 47999973 22 13789999984 678999999999988
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
.++
T Consensus 326 ~~~ 328 (330)
T PRK05664 326 RKE 328 (330)
T ss_pred Hhh
Confidence 665
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=184.10 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
++......+++++.++++.|++. .++ +++|+ +++..++. + +++||+ |+++.+.|++..
T Consensus 47 ~r~~~pt~~~le~~la~l~g~~~--~~~-~~sG~-~ai~~~~~-l---------------l~~Gd~--Vl~~~~~y~~t~ 104 (366)
T PRK08247 47 SRTGNPTRGVLEQAIADLEGGDQ--GFA-CSSGM-AAIQLVMS-L---------------FRSGDE--LIVSSDLYGGTY 104 (366)
T ss_pred cCCCCchHHHHHHHHHHHhCCCc--EEE-EcCHH-HHHHHHHH-H---------------hCCCCE--EEEecCCcCcHH
Confidence 33334456789999999999964 344 44564 56766553 3 468885 888888887754
Q ss_pred HH----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 196 LS----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 196 ~~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
.. ++..|++++.++.. |+++++++++ +++++|++++|+||+|.+.++++|+++||++|+++++|++
T Consensus 105 ~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~-----~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 105 RLFEEHWKKWNVRFVYVNTA-----SLKAIEQAIT-----PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred HHHHHHhhccCceEEEECCC-----CHHHHHHhcc-----cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 33 34479999988753 8999999987 5799999999999999999999999999999999999999
Q ss_pred CcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 272 ASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 272 ~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
++.+.....+. .+.|+++.|++|+++|+.+ .|+++.++ .+. ..+...
T Consensus 175 ~~~~~~~~p~~----~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~--~~~~~~------------------------ 224 (366)
T PRK08247 175 FYTPVLQRPLE----EGADIVIHSATKYLGGHNDVLAGLVVAKGQELC--ERLAYY------------------------ 224 (366)
T ss_pred CccccccCchh----cCCcEEEeecceeccCCCceeeeEEecChHHHH--HHHHHH------------------------
Confidence 87655433222 2789999999999998754 46666653 331 111100
Q ss_pred hhhhcCCCh-hHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEE-eCCCCCCCcceEEEEe
Q 043646 349 EERENGGTP-QIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQV-LGNTSVKRQAILSFLV 419 (625)
Q Consensus 349 ~~~~~~gt~-~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v-~~~~~~~~~~i~~f~~ 419 (625)
........ ++.+.+ ..++ .......++.+++++.+.+.|++.|++.. ..|. .+++++|.+
T Consensus 225 -~~~~g~~~s~~~a~l~~~~l-------~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~---~gg~~sf~~ 287 (366)
T PRK08247 225 -QNAAGAVLSPFDSWLLIRGM-------KTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPG---RGGMLSFRL 287 (366)
T ss_pred -HHhcCCCCChHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCC---cCcEEEEEE
Confidence 00001111 111111 1111 12333444567788999999999998874 3432 468888865
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-17 Score=180.08 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=148.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
...+|+++.+.++.++.+.+++.+.+..+ .|.+. ....+. ....++.+++.+++++|++. .+++++|+ +++..
T Consensus 85 tg~v~~tNlg~s~l~~~v~eav~~~~~~~-~~le~-~l~~g~-~g~r~~~~e~~lA~l~Gae~---a~vv~sgt-aAl~l 157 (464)
T PRK04311 85 TGVVLHTNLGRALLSEAAIEAVTEAARGY-SNLEY-DLATGK-RGSRDRALAALLCALTGAED---ALVVNNNA-AAVLL 157 (464)
T ss_pred CccEEeccCCCCCCCHHHHHHHHHHHhcc-ccccc-chhhcc-cchHHHHHHHHHHHHhCCCe---EEEECCHH-HHHHH
Confidence 35677777788899999999998877542 33221 111111 23446789999999999862 34554655 66766
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh----H--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN----L--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK 229 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~----~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~ 229 (625)
++.++ .+|++ |+++..+|+.+ . ..++..|+++++++.+ +..++++++++|+
T Consensus 158 ~l~~l----------------~~Gde--VIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~--- 214 (464)
T PRK04311 158 ALNAL----------------AAGKE--VIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAIN--- 214 (464)
T ss_pred HHHHh----------------CCCCE--EEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcC---
Confidence 65543 57775 88888776632 1 2345679999999764 3457999999998
Q ss_pred hCCCCeEEEEecccCc--cc--cccCHHHHHHHHHHcCCEEEEeccCcC---------CCccccCCCCCCCCCcEEEEcC
Q 043646 230 AAKRPMLGSFSACSNV--TG--IYSDTRSIARLLHQYGGFACFDFAASG---------PYVKINLRSRNIDGYDAIFLAT 296 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~--TG--~~~~l~~I~~la~~~g~~vivD~A~~~---------g~~~id~~~~~~~~~D~v~~S~ 296 (625)
++|++|+++|++|+ +| ...|+++|+++||+||+++++|.+++. +..+ ++......|+|++++|+
T Consensus 215 --~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p-~~~~~l~~GaDiv~fSg 291 (464)
T PRK04311 215 --ENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP-TVQELLAAGVDLVTFSG 291 (464)
T ss_pred --ccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC-chhhHHhcCCcEEEecC
Confidence 57999999999997 45 568999999999999999999996432 1112 22221113899999999
Q ss_pred CCCCCCCCCceEEEEeccc
Q 043646 297 HKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 297 hK~lggp~g~G~l~v~~~~ 315 (625)
|||+|||. .|++++++++
T Consensus 292 ~K~LgGp~-~G~i~g~~~l 309 (464)
T PRK04311 292 DKLLGGPQ-AGIIVGKKEL 309 (464)
T ss_pred cccccCCc-eEEEEEcHHH
Confidence 99999997 6999999887
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=180.40 Aligned_cols=333 Identities=14% Similarity=0.119 Sum_probs=202.2
Q ss_pred EeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|.. ..|...+.|.+++.+.+........ .+ ..+...+++++++++++.+ .++|+.||+.+.
T Consensus 42 ~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~--~~-----~~~~~~~l~~~l~~~~~~~---~~~~~~SGs~A~ 111 (401)
T PRK00854 42 RYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSR--AF-----RNDQLAPLYEELAALTGSH---KVLPMNSGAEAV 111 (401)
T ss_pred EEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc--cc-----CCHHHHHHHHHHHhhCCCC---EEEEeCCcHHHH
Confidence 477742 2334578999999998865311110 01 1346677889999998853 678887888875
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc------------CCeEEEEecCCCCCCCHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS------------LAEVVEIGLDDNGLLDIEA 220 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~------------G~~vv~v~~~~~~~ld~~~ 220 (625)
..++-.++.... -.++.+++...+|+.....|.+....+... ...+..++. .|+++
T Consensus 112 e~al~~a~~~~~-------~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~ 179 (401)
T PRK00854 112 ETAIKAVRKWGY-------EVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEA 179 (401)
T ss_pred HHHHHHHHHHHH-------hccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHH
Confidence 554433331000 000122332224555555566554333211 112333432 38899
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccccC--CCCCCCCCcEEE
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKINL--RSRNIDGYDAIF 293 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~id~--~~~~~~~~D~v~ 293 (625)
|++++. +++++|++++++|++|.+.| +++|.++|++||+++++|++++ +|.....+ ...+. .+|+++
T Consensus 180 le~~i~-----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~-~~D~~~ 253 (401)
T PRK00854 180 LEAAIT-----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGI-EADVTL 253 (401)
T ss_pred HHHHhC-----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCC-CCCEEE
Confidence 999987 57999999999999999987 9999999999999999999987 54433111 11111 468888
Q ss_pred EcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHH
Q 043646 294 LATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~ 372 (625)
++ |++++.. .+|+++.++++ +..+.+... +.+ + .+.+.......++++.+
T Consensus 254 ~~--K~l~gg~~~ig~v~~~~~~--~~~l~~~~~-~~t---------------------~-~~~~~~~aa~~a~L~~l-- 304 (401)
T PRK00854 254 IG--KALSGGFYPVSAVLSNSEV--LGVLKPGQH-GST---------------------F-GGNPLACAVARAALKVL-- 304 (401)
T ss_pred ec--ccccCCccCeEEEEEcHHH--HhcccCCCC-CCC---------------------C-CcCHHHHHHHHHHHHHH--
Confidence 75 9997543 37888988887 333322110 000 0 12223333334455543
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 373 EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
+. +.+.++.+.+.+++.+.|+++.. ...... ...+.++.+.+.++. ....++++.|.+ .|
T Consensus 305 ~~---~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~-~g~g~~~~i~~~~~~--------------~~~~~~~~~L~~-~G 364 (401)
T PRK00854 305 TE---EGMIENAAEMGAYFLEGLRSIRS-NIVREV-RGRGLMLAVELEPEA--------------GGARQYCEALKE-RG 364 (401)
T ss_pred HH---cCHHHHHHHHHHHHHHHHHhhcc-CceEEE-eccceEEEEEEecCc--------------hhHHHHHHHHHH-CC
Confidence 21 23556777788888888877632 111110 123455555443321 124678888866 69
Q ss_pred eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 453 IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 453 I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
|.+.+. .++++|+++++.++++|+++++++|++++.
T Consensus 365 V~v~~~---------------------------------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 365 LLAKDT---------------------------------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred eEEecC---------------------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 998521 137899999999999999999999998764
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=185.17 Aligned_cols=299 Identities=13% Similarity=0.109 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
.....+++++++++.|.+ .++.+ +|.++++..++.. +++||+ |+++...|......+.
T Consensus 53 ~p~~~~le~~lA~leg~~---~~v~~-~sG~aAi~~~l~~----------------l~~GD~--VI~~~~~yg~~~~~~~ 110 (364)
T PRK07269 53 NPTRAKLEETLAAIESAD---YALAT-SSGMSAIVLAFSV----------------FPVGSK--VVAVRDLYGGSFRWFN 110 (364)
T ss_pred CccHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHH----------------hCCCCE--EEEecCCcCchHHHHH
Confidence 344667899999999864 56666 4556667766643 468886 7777777765543322
Q ss_pred Hc----CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 200 QS----LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 200 ~~----G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
.. +.++. ...|+++++++++ ++|++|++++|+||||.+.|+++|+++||++|+++++|++++.+
T Consensus 111 ~~~~~~~~~~~-------~~~d~~~l~~~i~-----~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~ 178 (364)
T PRK07269 111 QQEKEGRFHFT-------YANTEEELIAAIE-----EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSP 178 (364)
T ss_pred HHHhcCcEEEE-------ecCCHHHHHHhcC-----cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 21 22211 1248899999997 68999999999999999999999999999999999999997766
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
+....+. . ++|++++|.+|+++|++. .|++++++... .+.+.. .+..
T Consensus 179 ~~~~pl~-~---gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l-~~~~~~--------------------------~~~~ 227 (364)
T PRK07269 179 IYQRPIE-L---GADIVLHSATKYLSGHNDVLAGVVVTNDLEL-YEKLFY--------------------------NLNT 227 (364)
T ss_pred ccCCchh-h---CCcEEEecCceeccCCCcccceEEEeCcHHH-HHHHHH--------------------------HHHH
Confidence 5433222 2 899999999999998775 47767654321 111100 0001
Q ss_pred CC-ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 354 GG-TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 354 ~g-t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
.| ..+.. .+.+... .....+.+.++..+++.++.++|++.|.+. ++.|. .++.++|.+....
T Consensus 228 ~G~~~s~~---~a~l~~~--~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg---~gg~~sf~~~~~~-------- 291 (364)
T PRK07269 228 TGAVLSPF---DSYLLMR--GLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTG---KGGMISFKVADET-------- 291 (364)
T ss_pred hCCCCCHH---HHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCC---cCcEEEEEECCHH--------
Confidence 11 11111 1111111 222355666777888999999999988864 44443 5789999884210
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....+.+.| +.+.+.++-|...+. |.......+..+. ..+ .|+.++.||+|+|. ||
T Consensus 292 -------~~~~f~~~l-~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~--------r~~-~Gi~~~liRlsvGl----E~ 350 (364)
T PRK07269 292 -------RIPHILNSL-KVFTFAESLGGVESLITYPTTQTHADIPAEV--------RHS-YGLTDDLLRLSIGI----ED 350 (364)
T ss_pred -------HHHHHHHhC-CcceEccCCCCcCeEeeCCcccccccCCHHH--------HHh-cCCCCCeEEEEecc----CC
Confidence 012344444 334444444433221 2111111222111 111 45678999999996 56
Q ss_pred HHHHHHHHHHHH
Q 043646 509 FEFILAALEFIA 520 (625)
Q Consensus 509 id~ll~aL~~~~ 520 (625)
++.+++-|++.+
T Consensus 351 ~~dli~dl~~al 362 (364)
T PRK07269 351 ARDLIADLKQAL 362 (364)
T ss_pred HHHHHHHHHHHh
Confidence 666666666544
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-18 Score=183.67 Aligned_cols=349 Identities=10% Similarity=0.003 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
..++++.+++++|.+ .+++++||+.+ +..++.++..... . ...++|||+ |+++.++|.++..++...|
T Consensus 65 ~~~fe~~lA~~~g~~---~~v~~~sGt~a-l~~aL~al~~~~~---~---~~~~~pGd~--VIv~~~t~~a~~~~v~~~G 132 (438)
T PRK15407 65 NDAFEKKLAEFLGVR---YALLVNSGSSA-NLLAFSALTSPKL---G---DRALKPGDE--VITVAAGFPTTVNPIIQNG 132 (438)
T ss_pred HHHHHHHHHHHhCCC---eEEEECCHHHH-HHHHHHHHhhccc---c---ccCCCCCCE--EEECCCCcHHHHHHHHHcC
Confidence 567899999999985 46777566655 4444443300000 0 002578886 9999999999999999999
Q ss_pred CeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC
Q 043646 203 AEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL 281 (625)
Q Consensus 203 ~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~ 281 (625)
++++.++++. ++.+|+++++++++ +++++|+++++ +|...++++|.++|+++|++|++|++|+.|...-+.
T Consensus 133 ~~pv~vdvd~~~~~id~~~le~~i~-----~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~ 204 (438)
T PRK15407 133 LVPVFVDVELPTYNIDASLLEAAVS-----PKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR 204 (438)
T ss_pred CEEEEEecCCCcCCcCHHHHHHHcC-----cCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCe
Confidence 9999999974 67899999999987 58999999874 688899999999999999999999999998765443
Q ss_pred CCCCCCCCcEEEEcCC--CCCCCCCCceEEEEeccccccCCCCCcccCCceEE---ee-c-----ccccc---ccccccc
Q 043646 282 RSRNIDGYDAIFLATH--KFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVN---YV-N-----AFDEK---DTLYLED 347 (625)
Q Consensus 282 ~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~---~~-~-----~~~~~---~~~~~~~ 347 (625)
..+.. | |+.++|+| |.+....| |+++++++.. ....+....+|... .. . .+... ....++.
T Consensus 205 ~~G~~-g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T PRK15407 205 MTGTF-G-DIATLSFYPAHHITMGEG-GAVFTNDPLL--KKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDH 279 (438)
T ss_pred eeecc-C-ceEEEeCCCCCCccccCc-eEEEECCHHH--HHHHHHHHHhCcccccccccccccccccccccccccccccc
Confidence 22211 3 78787775 55644344 8888887652 11111111111100 00 0 00000 0000000
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCCCCCcceEEEEeccCCCCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
.-.....|...-+.-+.||+... +....+.+.++.+++++++.+.|.+++++ .+...........+.|.+.-..
T Consensus 280 ~~~~~~~G~n~rmsel~AAig~~--qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--- 354 (438)
T PRK15407 280 KYTYSHLGYNLKITDMQAAIGLA--QLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKE--- 354 (438)
T ss_pred cccccccccccCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECC---
Confidence 00000122211111223333332 22235677778888899999999988753 2222111112222333332211
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCC-C-C-chhhHhh-h--cCChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCA-C-A-GPYGHTL-L--AFDQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~-~-~-~~~~~~~-l--~~~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
..+++..++.+.|.+ .||.++.... + . .|+.... . ..+-+.++++ ....+-+.+
T Consensus 355 --------~~~~~Rd~l~~~L~~-~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~-----------~~~~l~LP~ 414 (438)
T PRK15407 355 --------DAGFTRVELVKYLEE-NKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRI-----------MNDTFWIGV 414 (438)
T ss_pred --------cCCCCHHHHHHHHHH-CCCCccccCCCccccChhhhhcCCCCCCCChHHHHH-----------HhCeEEecC
Confidence 123457789999965 7998875332 1 0 0111100 0 0011222222 246788888
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 043646 501 PYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 501 ~~~~t~edid~ll~aL~~~~~ 521 (625)
+..+|++|+++++++|++++.
T Consensus 415 ~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 415 YPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 888999999999999998874
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=179.11 Aligned_cols=335 Identities=14% Similarity=0.119 Sum_probs=201.4
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| ..|+|..+ .|...+.|.+++.+.+......... ...+...++.++++++.+. +
T Consensus 31 G~~l~d~~G---~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~--~ 98 (396)
T PRK04073 31 GVWVKDPEG---NRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRA-------FHSDQLGPWYEKVAKLTGK--D 98 (396)
T ss_pred ecEEEECCC---CEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccc-------cCCHHHHHHHHHHHhcCCC--C
Confidence 344444444 34888743 3456789999999888643211100 1224456677888888764 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe------------EEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE------------VVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~ 207 (625)
.++|+.||+++...++-.++.... . .++.+++...+|......|.....++...+.. +..
T Consensus 99 -~~~~~~SGseA~e~Alk~a~~~~~------~-~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (396)
T PRK04073 99 -MVLPMNTGAEAVETAIKAARRWAY------D-VKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKK 170 (396)
T ss_pred -eEEEcCChHHHHHHHHHHHHHHhh------h-ccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceE
Confidence 688887888885444433321000 0 00112343324444455666665555433321 223
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc----
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK---- 278 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~---- 278 (625)
++. -|++++++++. +++++|+++.++|++|.+.| +++|.++|++||+++++|+++. +|...
T Consensus 171 ~~~-----~d~~~l~~~i~-----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~ 240 (396)
T PRK04073 171 IPY-----GDLEALKAAIT-----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFA 240 (396)
T ss_pred eCC-----CCHHHHHHhcc-----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHH
Confidence 332 27899998886 57899999999999999976 7899999999999999999977 33211
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
.+.... .+|++++| |.+|++ ..+|++++++++. +.+.+... +.+ ..+.|
T Consensus 241 ~~~~~~---~pdi~~~s--K~lg~gg~~ig~~~~~~~i~--~~~~~~~~-~~t----------------------~~~~~ 290 (396)
T PRK04073 241 CDWDNV---TPDMYILG--KALGGGVFPISCVAANRDIL--GVFTPGSH-GST----------------------FGGNP 290 (396)
T ss_pred hhhcCC---CCCEEEec--ccccCCCCcceEEEEcHHHH--hhhcCCCC-CCC----------------------CCCCH
Confidence 122222 57888765 999866 3489999998873 33221110 000 01223
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 358 QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
.......++++.+ +. +.+.++.+.+.+++.+.|+++ +.+..+. .++.++.+.+ +.
T Consensus 291 ~~~aaa~aaL~~~--~~---~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~----~~g~~~~~~~-~~------------- 347 (396)
T PRK04073 291 LACAVSIAALEVL--EE---EKLPERSLELGEYFKEQLKEIDNPMIKEVR----GRGLFIGVEL-NE------------- 347 (396)
T ss_pred HHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHhhcCCccccee----cceEEEEEEe-cc-------------
Confidence 2222233445443 22 245567777888898888775 2222111 1233333322 21
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
....+.+.|.+ +||.+.+. .++++||++++.+|++|+++++++
T Consensus 348 ---~~~~~~~~l~~-~Gv~~~~~---------------------------------~~~~iRi~p~l~~t~e~i~~~~~~ 390 (396)
T PRK04073 348 ---PARPYCEALKE-EGLLCKET---------------------------------HETVIRFAPPLVITKEELDWAFEK 390 (396)
T ss_pred ---hHHHHHHHHHH-CCeEEecC---------------------------------CCCEEEEECCcccCHHHHHHHHHH
Confidence 14578888865 69998631 137899999999999999999999
Q ss_pred HHHHH
Q 043646 516 LEFIA 520 (625)
Q Consensus 516 L~~~~ 520 (625)
|++++
T Consensus 391 l~~~l 395 (396)
T PRK04073 391 IKAVL 395 (396)
T ss_pred HHHHh
Confidence 98764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=180.20 Aligned_cols=341 Identities=15% Similarity=0.116 Sum_probs=204.0
Q ss_pred EeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..+ .+..++.|.+++.+.+..... +..+....+...++++.++++++.+.+ .++|+.+|+.+
T Consensus 37 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgsea- 108 (413)
T cd00610 37 RYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTH------FSLGFFYNEPAVELAELLLALTPEGLD-KVFFVNSGTEA- 108 (413)
T ss_pred EEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcC------ccCcccCCHHHHHHHHHHHHhCCCCCC-EEEEcCcHHHH-
Confidence 3666544 344678999999888843211 111111346678899999999997555 78898555555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCCC------C
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDDN------G 214 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~~------~ 214 (625)
+..++.++. .+.++++ +++.....|.+....+...+ .+++.+|.+.. .
T Consensus 109 ~~~al~~~~-------------~~~~~~~-ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (413)
T cd00610 109 VEAALKLAR-------------AYTGRKK-IISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAEL 174 (413)
T ss_pred HHHHHHHHH-------------HHcCCCe-EEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhH
Confidence 444444331 0234554 44445556665554444332 24566666521 2
Q ss_pred CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCC-Ccc--ccCCCCCCC
Q 043646 215 LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YVK--INLRSRNID 287 (625)
Q Consensus 215 ~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g-~~~--id~~~~~~~ 287 (625)
..|+++|+++++++ .+++++++++..++++|.+.| +++|.++|++||+++++|++++.. ... ......+.
T Consensus 175 ~~d~~~l~~~l~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~- 251 (413)
T cd00610 175 ADDLEALEEALEEH--PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGV- 251 (413)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCC-
Confidence 34888999988731 236788999988899999887 999999999999999999998732 111 11111111
Q ss_pred CCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceEEeeccccccccccccchhhhhcCCChhH-HHHHH
Q 043646 288 GYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQMIR 364 (625)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~ 364 (625)
.+|++++| |+++++..+|+++.++++. +.+ .+... ....+.+++ ...+.
T Consensus 252 ~~d~~t~s--K~l~~g~~~g~~~~~~~~~--~~~~~~~~~~------------------------~~t~~~~~~~~~a~~ 303 (413)
T cd00610 252 EPDIVTLG--KGLGGGLPLGAVLGREEIM--DAFPAGPGLH------------------------GGTFGGNPLACAAAL 303 (413)
T ss_pred CCCeEEEc--ccccCccccEEEEEcHHHH--HhhccCCCCC------------------------CCCCCcCHHHHHHHH
Confidence 45776555 9998766689999988773 222 11100 001122222 22233
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHH
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFV 443 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v 443 (625)
++++++. . +.+.++.+.+.+++.+.|+.+... .+.... ...++++.+.+....... .........+
T Consensus 304 a~l~~l~--~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~ 370 (413)
T cd00610 304 AVLEVLE--E---EGLLENAAELGEYLRERLRELAEKHPLVGDV-RGRGLMIGIELVKDRATK-------PPDKELAAKI 370 (413)
T ss_pred HHHHHHH--h---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEe-ecCceEEEEEEecCCCcC-------CcchHHHHHH
Confidence 4455542 2 345667777777887777654210 111110 124566666654321000 0000124567
Q ss_pred HHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 444 ATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 444 ~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.+.|.+ +||.+.++. ++.+|+++++.+|++|+++++++|+++
T Consensus 371 ~~~l~~-~gv~v~~~~---------------------------------~~~lR~~~~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 371 IKAALE-RGLLLRPSG---------------------------------GNVIRLLPPLIITEEEIDEGLDALDEA 412 (413)
T ss_pred HHHHHH-CCeEEeecC---------------------------------CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 777755 699998542 267999999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=174.13 Aligned_cols=185 Identities=15% Similarity=0.068 Sum_probs=133.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
...+.|+.+.....|+.+.+++.+.+... + .|. ....+++++++++|. +|++| +|++++|..
T Consensus 8 ~~~i~l~~~~np~~p~~~~~a~~~~~~~~----~--~yp-------~~~~l~~~ia~~~~~----~I~vt-~G~~~al~~ 69 (311)
T PRK08354 8 EGLIDFSASVNPYPPEWLDEMFERAKEIS----G--RYT-------YYEWLEEEFSKLFGE----PIVIT-AGITEALYL 69 (311)
T ss_pred cceeEecCCCCCCCCHHHHHHHHHHHHHh----h--cCC-------ChHHHHHHHHHHHCC----CEEEC-CCHHHHHHH
Confidence 45677776655555678888887655321 1 111 124578899999983 68887 899999988
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++..+ .+||+ |+++.+.|+.+...++..|++++.++ +|++.|+++++ +++
T Consensus 70 ~~~~~----------------~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~------~~~ 119 (311)
T PRK08354 70 IGILA----------------LRDRK--VIIPRHTYGEYERVARFFAARIIKGP------NDPEKLEELVE------RNS 119 (311)
T ss_pred HHHhh----------------CCCCe--EEEeCCCcHHHHHHHHHcCCEEeecC------CCHHHHHHhhc------CCC
Confidence 77543 46775 99999999999989999999997764 47888887765 467
Q ss_pred EEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEE
Q 043646 236 LGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLI 311 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v 311 (625)
++++++|+||||.+.+. ++|+++|+++|+++|+|+++..-...- .... ..--+++.|++|.|+.|+ .+|++++
T Consensus 120 ~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~--~~~~-~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 120 VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP--ESPE-GENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred EEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc--cccC-CCcEEEEeccHhhcCCccceeeeeee
Confidence 89999999999999874 566777889999999999964321110 1110 123467789999998664 4899887
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-18 Score=180.47 Aligned_cols=331 Identities=14% Similarity=0.097 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH---
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--- 197 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (625)
...+++++.++++.|... .+.++||+. ||..++.++ +++||+ ||+++..|.+....
T Consensus 61 Ptv~~lE~~la~leg~~~---av~~~SG~a-Ai~~al~al---------------l~~GD~--VI~~~~~Y~~T~~~~~~ 119 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVG---AVATASGQA-AIMLAVLNI---------------CSSGDH--LLCSSTVYGGTFNLFGV 119 (432)
T ss_pred cHHHHHHHHHHHHhCCCc---EEEECCHHH-HHHHHHHHh---------------cCCCCE--EEECCCchHHHHHHHHH
Confidence 346778999999999853 344535554 566665555 578995 99999888766554
Q ss_pred -HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 198 -WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 198 -~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
+...|++++++.. .+|+++++++|+ ++|++|++.++.||++.+.|+++|+++||++|+++++|++.+.|+
T Consensus 120 ~l~~~Gi~v~~vd~----~~d~~~l~~~I~-----~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~ 190 (432)
T PRK06702 120 SLRKLGIDVTFFNP----NLTADEIVALAN-----DKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPY 190 (432)
T ss_pred HHHHCCCEEEEECC----CCCHHHHHHhCC-----cCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchh
Confidence 5667999999964 368999999998 689999999999999999999999999999999999999977553
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC-c-eEEEEeccccccCCCC--------CcccCCceEEeeccccccccccc-
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT-P-GILLISKALYQLGSSP--------PSTCGGGTVNYVNAFDEKDTLYL- 345 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~-G~l~v~~~~~~l~~~~--------p~~~ggg~v~~~~~~~~~~~~~~- 345 (625)
..-.+ +. |+|+++.|..||++|..+ + |+++....+. ....+ +.++. . .+.. +.....+.
T Consensus 191 ~~~pl-~~---GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~-w~~~~~~~l~~~~~~~~~-~--~~~~--~~~~~~~~~ 260 (432)
T PRK06702 191 LCQAF-EH---GANIIVHSTTKYIDGHASSLGGIVIDGGNFD-WTNGKYPELVEPDPSYHG-V--SYVQ--NFGAAAYIV 260 (432)
T ss_pred hCChh-hc---CCCEEEEccccccCCCcceeceEEEeCCCcc-cccccccccccccccccc-c--chhh--ccchhhHHH
Confidence 32111 22 899999999999998864 3 4443333220 00000 00000 0 0000 00000000
Q ss_pred -cchhhhhcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC--------------
Q 043646 346 -EDIEERENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------- 408 (625)
Q Consensus 346 -~~~~~~~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------- 408 (625)
.........|+ .+... +.+... .....+.+.++..+++..+.++|++.|.++ |+.|.-
T Consensus 261 ~~~~~~~~~~g~~~sp~~---a~l~~r--gL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~ 335 (432)
T PRK06702 261 KARVQLLRDYGNCMSPFN---AYISNI--GLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLK 335 (432)
T ss_pred HHHHHHHHHccCCCCHHH---HHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCc
Confidence 00001112222 22111 111111 122345556666788999999999998875 433311
Q ss_pred CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHH
Q 043646 409 VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 409 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
..-+++++|.+..+. -....+.+.| +.+.+.+.-|..-+ .|.......+..+...
T Consensus 336 ~g~gg~~sf~l~~~~--------------~~~~~f~~~l-~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~------- 393 (432)
T PRK06702 336 KGASGVLTFGIKGGL--------------EAAKEFIANV-KLATLVTHVADARTCVIHPASTTHRQLSAEDQR------- 393 (432)
T ss_pred CCCceEEEEEecCCH--------------HHHHHHHHhC-ccceeccccCCCCcceECCCCCCcccCCHHHHH-------
Confidence 113578888885211 0123455555 44555554443211 0221112222221111
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
..|+.++.||||+|. ||.|.|++-|++.+..+.
T Consensus 394 --~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~Al~~~~ 426 (432)
T PRK06702 394 --LAGVTSDLIRLSVGI----EDVSDIIADLEAALVGGK 426 (432)
T ss_pred --hcCCCCCeEEEEecc----CCHHHHHHHHHHHHhcCc
Confidence 256778999999985 677778888887776653
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-18 Score=179.89 Aligned_cols=309 Identities=14% Similarity=0.103 Sum_probs=183.8
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
.+++.+.+++.+..... . .| + ......++++.|++++|.++. +++++|+.+.+..+. ++
T Consensus 11 ~p~~~~~~a~~~~~~~~----~--~Y--~--~~~~~~~L~~~la~~~g~~~~---~v~~~g~~a~~~~l~-~~------- 69 (333)
T PRK10534 11 RPSRAMLEAMMAAPVGD----D--VY--G--DDPTVNALQDYAAELSGKEAA---LFLPTGTQANLVALL-SH------- 69 (333)
T ss_pred CCCHHHHHHHHhccCCC----c--cc--C--CCHHHHHHHHHHHHHhCCCeE---EEeCchHHHHHHHHH-Hh-------
Confidence 36678888886643211 1 11 1 123467789999999998643 455456655443333 33
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHcC-CeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCeEEEEeccc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQSL-AEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPMLGSFSACS 243 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G-~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv~~~~~~ 243 (625)
+.+||+ |+++.+.|.+.... ....| ++++.++++.++.+|+++|+++++++. ...++++|++++++
T Consensus 70 --------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~ 139 (333)
T PRK10534 70 --------CERGEE--YIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH 139 (333)
T ss_pred --------cCCCCe--eEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC
Confidence 467885 77777777543321 23333 688888887778999999999886210 00158999998654
Q ss_pred CccccccCHHH---HHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCCCce-EEEEecccc
Q 043646 244 NVTGIYSDTRS---IARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPGTPG-ILLISKALY 316 (625)
Q Consensus 244 n~TG~~~~l~~---I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G-~l~v~~~~~ 316 (625)
||.+.|.++ |+++|++||+++++|+|+..... ....... ....|.++.+++|.++.+ +| +++.++++.
T Consensus 140 --~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~-~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i 214 (333)
T PRK10534 140 --NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEI-TQYCDSFTICLSKGLGTP--VGSLLVGNRDYI 214 (333)
T ss_pred --CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHH-HhcCCEEEEEeEcCCCCc--ccceEEcCHHHH
Confidence 699988765 56788899999999998653211 1111100 013476677899999866 45 576677762
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
+.+.... . ...+..+..+.. .+++..+ +. ..+.+. +..+.++++.+.|
T Consensus 215 --~~~~~~~------------------------~-~~~~~~~~~~~~~a~~~~~l--~~-~~~~~~-~~~~~r~~l~~~L 263 (333)
T PRK10534 215 --KRARRWR------------------------K-MTGGGMRQAGILAAAGLYAL--KH-NVARLQ-EDHDNAAWLAEQL 263 (333)
T ss_pred --HHHHHHH------------------------H-HhCCchhhHHHHHHHHHHHH--Hh-hHHHHH-HHHHHHHHHHHHH
Confidence 2221000 0 001111222222 1222222 11 122233 3344577889999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
.++ |++++.+. +++.|...++. +..++.+.|. +.||.+++|
T Consensus 264 ~~~-g~~~~~~~-----~nfv~~~~~~~---------------~~~~~~~~l~-~~gi~v~~~----------------- 304 (333)
T PRK10534 264 REA-GADVMRQD-----TNMLFVRVGEE---------------QAAALGEYMR-ERNVLINAS----------------- 304 (333)
T ss_pred HhC-CCccCCCC-----ceEEEEECCch---------------hHHHHHHHHH-HcCeeecCC-----------------
Confidence 887 77765432 44444433311 2457777774 579999853
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
..+|++..+.+|++++++++++|+.++
T Consensus 305 ------------------~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 305 ------------------PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred ------------------ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 236888766679999999999998765
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=165.79 Aligned_cols=334 Identities=16% Similarity=0.138 Sum_probs=234.3
Q ss_pred EeccCCCCCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 79 TYADHTASGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~~~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.|..++..+.. .++|.++-++.+..+...+.+.. .-.+++.+...++..||++.+.+. .+++. ++-.++.-...
T Consensus 71 nFcaNnYLGLsshPeii~a~~~aleeyGaGlssvr--fIcGtq~iHk~LE~kiAqfh~rED--~ilyp-scfdANag~fe 145 (417)
T KOG1359|consen 71 NFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVR--FICGTQDIHKLLESKIAQFHGRED--TILYP-SCFDANAGAFE 145 (417)
T ss_pred eecccccccccCChHHHHHHHHHHHHhCCCcccee--EEecchHHHHHHHHHHHHHhCCCc--eEEec-cccccchHHHH
Confidence 34445555543 47899999998888766666533 334577888999999999999752 45554 67766554433
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
++ +.|.|. |+....+|.|.+..++... ..+++|+..|+..+.+.+ .-+.++|
T Consensus 146 -ai---------------l~pedA--vfSDeLNhASIIdGirLck---------ry~h~dv~~l~~~l~~a~-k~r~klv 197 (417)
T KOG1359|consen 146 -AI---------------LTPEDA--VFSDELNHASIIDGIRLCK---------RYRHVDVFDLEHCLISAC-KMRLKLV 197 (417)
T ss_pred -Hh---------------cChhhh--hhccccccchhhhhhHHHh---------hhccchhHHHHHHHHHhh-hheEEEE
Confidence 32 356774 8888999999998887632 456788989988776422 1367899
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC---C--CCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR---S--RNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~---~--~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
+.....++.|.+.|+++|.+++++||+++++|++|+.|.....-+ + ..+..+|++..+..|.+||..| |+...+
T Consensus 198 ~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttgp 276 (417)
T KOG1359|consen 198 VTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTGP 276 (417)
T ss_pred EecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccCC
Confidence 999999999999999999999999999999999998765432111 1 1134789999999999998877 898888
Q ss_pred cccccc-C-CCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 313 KALYQL-G-SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 313 ~~~~~l-~-~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
+.+..+ + +.+|+.+.. .-.|.+.+...+++++++. ...+..+.+.+.++
T Consensus 277 ~~li~llrqr~RpylFSn-------------------------slppavV~~a~ka~dllm~----s~~~i~~~~a~~qr 327 (417)
T KOG1359|consen 277 KPLISLLRQRSRPYLFSN-------------------------SLPPAVVGMAAKAYDLLMV----SSKEIQSRQANTQR 327 (417)
T ss_pred hhHHHHHHhcCCceeecC-------------------------CCChhhhhhhHHHHHHHHh----hHHHHHHHHHHHHH
Confidence 887432 1 223333110 1135566666667776632 23455666777888
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+++.+.. .|+.+.+.. .||....+-+.. + ....++.|++ .||.|-+-..+..|.+
T Consensus 328 fr~~me~-aGftIsg~~----hPI~pv~lGda~--------------l-A~~~ad~lLk-~Gi~Vigfs~PvVP~g---- 382 (417)
T KOG1359|consen 328 FREFMEA-AGFTISGAS----HPICPVMLGDAR--------------L-ASKMADELLK-RGIYVIGFSYPVVPKG---- 382 (417)
T ss_pred HHHHHHh-cCceecCCC----CCccceecccHH--------------H-HHHHHHHHHh-cCceEEeecCCcCCCC----
Confidence 8887765 499988753 467766664321 1 2356667766 5999986665554432
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.-.+|+.+...+|+||||++++++.++.+.
T Consensus 383 ----------------------kariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 383 ----------------------KARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred ----------------------ceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 256888898899999999999999987654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-17 Score=180.09 Aligned_cols=341 Identities=13% Similarity=0.050 Sum_probs=196.7
Q ss_pred HHHHHH-HHHHHHhCC--CCCC--cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 122 MVHEAS-NYIKRCLGG--GQAD--AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 122 ~~~~~~-~~ia~~~g~--~~~~--~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
..+++. +++.+.++. .+.+ +|++| +|++++|..++.++... ..++|||+ |++..+.|+.+..
T Consensus 133 ~~e~iv~~y~~~~~~~~~~~~~~~~V~it-~Gat~al~~~~~~l~~~----------~ll~pGD~--Vlv~~P~y~~y~~ 199 (521)
T TIGR03801 133 HSEKIVHQYLIQEMCGNKPPPGEFDLFAV-EGGTAAMCYIFDSLKAN----------ELLKKGDK--IALMTPIFTPYLE 199 (521)
T ss_pred HHHHHHHHHHHhhccCCCCCCCcCeEEEe-CCHHHHHHHHHHHHhHh----------hcCCCCCE--EEEeCCCcHHHHH
Confidence 333333 555555432 2332 68888 89999998887763100 01578996 9999999988877
Q ss_pred HHHHc--CCeEEEEecCC--C-----CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHc--
Q 043646 197 SWRQS--LAEVVEIGLDD--N-----GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQY-- 262 (625)
Q Consensus 197 ~~~~~--G~~vv~v~~~~--~-----~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~-- 262 (625)
..+.. |++++.++.+. + +.+|+++|+++++ ++++++++++|+||||.+.+ +++|+++|++|
T Consensus 200 ~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~-----~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~ 274 (521)
T TIGR03801 200 IPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD-----PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRP 274 (521)
T ss_pred HHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC-----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 66554 77888888753 2 5789999998776 68999999999999999988 67778889886
Q ss_pred CCEEEEeccCcCCC-ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEecccc---ccCCC--------CCcccCCc
Q 043646 263 GGFACFDFAASGPY-VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALY---QLGSS--------PPSTCGGG 329 (625)
Q Consensus 263 g~~vivD~A~~~g~-~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~---~l~~~--------~p~~~ggg 329 (625)
++++|+|++++.-. ....+... ...--+++.|++|.||.|+ .+|+++++++.. .+..+ ...+ +.-
T Consensus 275 ~l~II~DEvY~~f~~~~~sl~~~-~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry-~~~ 352 (521)
T TIGR03801 275 DLMILTDDVYGTFVDDFRSLFAE-LPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRY-SSL 352 (521)
T ss_pred CeEEEECCCchhhcccccchhhh-CCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhh-ccc
Confidence 99999999976311 11111111 0012366779999998665 389999876510 01111 0000 000
Q ss_pred eEEeeccccccccccccc-------hhhhhcCCChhHHHH--HH-HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 330 TVNYVNAFDEKDTLYLED-------IEERENGGTPQIVQM--IR-AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 330 ~v~~~~~~~~~~~~~~~~-------~~~~~~~gt~~~~~~--~~-aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
+ .+.+.-.+.+. +......|.+...+. +. ++.+++-......+.+.+..++..+.+.+.|
T Consensus 353 ~------~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L---- 422 (521)
T TIGR03801 353 T------TEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL---- 422 (521)
T ss_pred c------CChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc----
Confidence 0 00000011111 111122333333332 11 1222221111223455666666677777777
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccC--CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER--NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~--~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
|+.+... ...++.+.|.-.+.......+..... ....+..+++..|.++.||.+.+|..|+.+
T Consensus 423 g~~~~~~--~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~------------- 487 (521)
T TIGR03801 423 GLPLQED--PNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP------------- 487 (521)
T ss_pred CCCCcCC--CCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC-------------
Confidence 3322111 12445555554432100000000000 001135678888888999999999887621
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+++|||+.. .+++++..+.+.|++++.+.
T Consensus 488 ---------------~~~vRisla~-l~~~~~~~~~~rl~~~~~~~ 517 (521)
T TIGR03801 488 ---------------EWSVRVSLAN-LNEYDYAEIGRAIRKILDEY 517 (521)
T ss_pred ---------------CCeEEEEecC-CCHHHHHHHHHHHHHHHHHH
Confidence 3679999952 57889999999999887653
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-17 Score=177.68 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW- 198 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (625)
....+++++.+++++|.+ ..+++++|+.+ +..++.++ +++||+ |+++...|++....+
T Consensus 56 ~p~~~~le~~lA~l~g~~---~~v~~~sG~~A-i~~al~~l---------------~~~Gd~--Vl~~~~~y~~t~~~~~ 114 (418)
T TIGR01326 56 NPTTDVLEQRIAALEGGV---AALAVASGQAA-ITYAILNL---------------AQAGDN--IVSSSYLYGGTYNLFK 114 (418)
T ss_pred ChhHHHHHHHHHHHhCCC---eEEEEccHHHH-HHHHHHHH---------------hCCCCE--EEEECCCcHHHHHHHH
Confidence 344578999999999974 34666566665 55555444 468886 888888876654443
Q ss_pred ---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 199 ---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 199 ---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
...|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|+++|+++|+++++|++++.+
T Consensus 115 ~~~~~~G~~v~~v~~~-----d~~~l~~~l~-----~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~ 184 (418)
T TIGR01326 115 HTLKRLGIEVRFVDPD-----DPEEFEKAID-----ENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATP 184 (418)
T ss_pred HHHHHcCcEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchh
Confidence 4579999998853 8999999987 57999999999999999999999999999999999999998876
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEecc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISKA 314 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~~ 314 (625)
.....+ .. ++|+++.|++|++++++. +|++++++.
T Consensus 185 ~~~~~l-~~---g~Divv~S~sK~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 185 YLCRPI-DH---GADIVVHSATKYIGGHGTAIGGVIVDGG 220 (418)
T ss_pred hcCCch-hc---CCeEEEECccccccCCccceEEEEEecc
Confidence 432222 22 789999999999987654 788888653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-17 Score=173.18 Aligned_cols=348 Identities=14% Similarity=0.093 Sum_probs=205.1
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+....|+ .|+|..+. |-.++.|.+++.+.+..... .+. . ...+..+++++.++++++. +
T Consensus 22 G~~~~d~dg~---~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~-~~~-~-----~~~~~~~~~~~~l~~~~~~--~ 89 (400)
T PTZ00125 22 GVFVWDVEGK---KYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL-TSR-A-----FYNDVLGLAEKYITDLFGY--D 89 (400)
T ss_pred cCEEEeCCCC---EEEEcccCHhhccCCcCCHHHHHHHHHHHHhccc-ccc-c-----ccCHHHHHHHHHHHhCCCC--C
Confidence 3445555453 37776432 33578999999988753211 111 0 0134667888888888875 2
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEE---EecCC----
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVE---IGLDD---- 212 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~---v~~~~---- 212 (625)
.++|++||+.++...+-.++..... + .++..+.+.+|......|......+...+..... .+...
T Consensus 90 -~~~~~~SGs~A~e~al~~~~~~~~~---~----~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
T PTZ00125 90 -KVLPMNSGAEAGETALKFARKWGYE---V----KGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFEL 161 (400)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHHHh---c----cCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceE
Confidence 6888889988855555433210000 0 0011122334555556666665555443321100 01000
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc----ccCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK----INLRS 283 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~----id~~~ 283 (625)
-...|+++|+++++. +++++|+++.++|+||.+.| +++|.++|++||+++|+|++++ +|... .+...
T Consensus 162 ~~~~d~~~le~~l~~----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~ 237 (400)
T PTZ00125 162 VDYNDVEALEKLLQD----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEG 237 (400)
T ss_pred eCCCCHHHHHHHhCC----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcC
Confidence 012389999998862 47999999999999999988 9999999999999999999975 33211 11122
Q ss_pred CCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH
Q 043646 284 RNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM 362 (625)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 362 (625)
. .+|++++| |+++++. .+|++++++++. +.+.+...+ .+ ..++|....+
T Consensus 238 ~---~pd~~~~s--K~l~~g~~~ig~v~~~~~~~--~~~~~~~~~-~t----------------------~~~~~~~~~a 287 (400)
T PTZ00125 238 V---KPDIVLLG--KALSGGLYPISAVLANDDVM--LVIKPGEHG-ST----------------------YGGNPLACAV 287 (400)
T ss_pred C---CCCEEEEc--ccccCCCcCcEEEEEcHHHH--hhccCCCCC-CC----------------------CCcCHHHHHH
Confidence 2 46888766 9998654 689999998873 333221100 00 1233333333
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 363 IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
+.++++++. ..+ +.++.+++.+++++.|.++ +.+....+ .+.++.+.+..+. ..
T Consensus 288 a~~~l~~i~--~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~----~g~~~~v~~~~~~-------------~~ 345 (400)
T PTZ00125 288 AVEALEVLK--EEK---LAENAQRLGEVFRDGLKELLKKSPWVKEIRG----KGLLNAIVFDHSD-------------GV 345 (400)
T ss_pred HHHHHHHHH--hcC---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEec----ccEEEEEEEccCc-------------ch
Confidence 345555542 222 3345555566666666543 32222211 2334444332111 12
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
....+++.|.+ +||.+.++ .++++||++++.++++|+++++++|++
T Consensus 346 ~~~~~~~~l~~-~Gv~v~~~---------------------------------~~~~lRi~~~~~~~~~~i~~~l~~l~~ 391 (400)
T PTZ00125 346 NAWDLCLKLKE-NGLLAKPT---------------------------------HDNIIRFAPPLVITKEQLDQALEIIKK 391 (400)
T ss_pred HHHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 34578888865 69998643 137899999999999999999999998
Q ss_pred HHHhh
Q 043646 519 IAAYG 523 (625)
Q Consensus 519 ~~~~~ 523 (625)
++.+.
T Consensus 392 ~l~~~ 396 (400)
T PTZ00125 392 VLKSF 396 (400)
T ss_pred HHHHH
Confidence 87653
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=164.58 Aligned_cols=293 Identities=15% Similarity=0.203 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--H-H
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--W-R 199 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~-~ 199 (625)
..++++++|+++|-+.. +|+.|||..++..++..+ -++|.+ |++.+..|...... + .
T Consensus 58 t~rLE~~vA~l~GKEAg---LFv~SGTmgNllaIm~Hc---------------~~rg~e--ii~gd~~HI~~~E~gg~s~ 117 (384)
T KOG1368|consen 58 TNRLEQRVAELFGKEAG---LFVPSGTMGNLLAIMVHC---------------HQRGSE--IIVGDRAHIHRYEQGGISQ 117 (384)
T ss_pred HHHHHHHHHHHhCccce---eeecccccccHHHHHHHh---------------cCCCce--EEeccchheeehhccChhh
Confidence 35688999999998755 777799999988887766 357775 99999999776543 2 2
Q ss_pred HcCCeEEEEecCCCCCCCHHHHHHHHHH---hhhCCCCeEEEEecccCccc-cccCHH---HHHHHHHHcCCEEEEeccC
Q 043646 200 QSLAEVVEIGLDDNGLLDIEALRSQLEL---YKAAKRPMLGSFSACSNVTG-IYSDTR---SIARLLHQYGGFACFDFAA 272 (625)
Q Consensus 200 ~~G~~vv~v~~~~~~~ld~~~L~~~l~~---~~~~~~~~lv~~~~~~n~TG-~~~~l~---~I~~la~~~g~~vivD~A~ 272 (625)
..|+.++.+...++|.+|++++++++.. +.+.+-|++|++.+.+|.+| .+.|++ +|.++|++||+-+|.|+|-
T Consensus 118 l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 118 LAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred hccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh
Confidence 3578888888888999999999999983 23445689999999999988 888875 5678999999999999982
Q ss_pred ---cCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 273 ---SGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 273 ---~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
+.-...+.++.+. ..+|.+..+++|.+|.|-| ++++.++++..-...-....|||.
T Consensus 198 i~NAavasgV~vk~i~-~~fDSVsiCLSKglgAPVG-SViVG~k~FI~kA~~~RKalGGGm------------------- 256 (384)
T KOG1368|consen 198 IFNAAVASGVPVKKIC-SAFDSVSICLSKGLGAPVG-SVIVGSKDFIDKARHFRKALGGGM------------------- 256 (384)
T ss_pred hhhHHHHcCCCHHHHH-HhhhhhhhhhhccCCCCcc-cEEEccHHHHHHHHHHHHHhcCch-------------------
Confidence 2112233333321 2579999999999999997 788889888431111111233332
Q ss_pred hhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 350 ERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 350 ~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
--.+++ ++++..+ + .... ..++.++++..+.+.+...+++++-.+. ....++...+ ..
T Consensus 257 --------RQsGvLaaaaLval--~-~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a--~etNiv~~~l-~q------ 315 (384)
T KOG1368|consen 257 --------RQSGVLAAAALVAL--D-ENVP-LLRADHKRAKELAEYINTPEEIRVEVPA--VETNIVNMVL-CQ------ 315 (384)
T ss_pred --------hHHHHHHHHHHHHh--h-cchH-HHHHHHHHHHHHHHHhccccceeeecch--hhcceeeeec-cc------
Confidence 112232 3333333 2 1222 3445566677777788777778876552 1233443333 21
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
..++..++++.+ +++||.+.+|.. ..+|+.+++-.|+++
T Consensus 316 -------~~~~~~~l~~~~-~k~gi~lm~~~s---------------------------------~r~Rivlh~Qvt~~~ 354 (384)
T KOG1368|consen 316 -------ARLTAEELCKFL-EKNGILLMGGAS---------------------------------RRIRIVLHHQVTDED 354 (384)
T ss_pred -------ccCCHHHHHHHH-HHCCeEEeeccc---------------------------------cceEEEEEEecCHHH
Confidence 246788999999 568999986532 448999999999999
Q ss_pred HHHHHHHHHH
Q 043646 509 FEFILAALEF 518 (625)
Q Consensus 509 id~ll~aL~~ 518 (625)
++.++..+.+
T Consensus 355 ve~~~~~~~k 364 (384)
T KOG1368|consen 355 VEYVKSVLSK 364 (384)
T ss_pred HHHHHHHHHH
Confidence 9999999954
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-18 Score=180.54 Aligned_cols=163 Identities=16% Similarity=0.058 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
+......+++++.+++++|.+ .++++ +|+++++..++.++ +++||+ |+++.+.|..+..
T Consensus 61 r~~~pt~~~Le~~lA~l~g~~---~~l~~-~sgt~Ai~~~l~al---------------~~~GD~--Vl~~~~~y~~~~~ 119 (394)
T PRK07050 61 LHATPTSLALAQRLAEIEGGR---HALLQ-PSGLAAISLVYFGL---------------VKAGDD--VLIPDNAYGPNRD 119 (394)
T ss_pred CCCCHHHHHHHHHHHHHhCCC---eEEEe-ccHHHHHHHHHHHH---------------hCCCCE--EEEecCCcccHHH
Confidence 333445678999999999964 57887 67777788887776 578996 9999999988764
Q ss_pred H----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccC
Q 043646 197 S----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272 (625)
Q Consensus 197 ~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~ 272 (625)
. .+..|++++.++.. +.++++++++ ++|++|++++|+||+|.+.|+++|+++||++|+++++|+++
T Consensus 120 ~~~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~-----~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~ 189 (394)
T PRK07050 120 HGEWLARDFGITVRFYDPL-----IGAGIADLIQ-----PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTY 189 (394)
T ss_pred HHHHHHHhcCeEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCc
Confidence 3 34569999888743 4577888887 68999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEecc
Q 043646 273 SGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKA 314 (625)
Q Consensus 273 ~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~ 314 (625)
+.|...-.+ .. |+|+++.|++|+++|..+ .|+++++++
T Consensus 190 a~~~~~~~l-~~---GaDi~v~S~tK~~~g~~~~~gG~v~~~~~ 229 (394)
T PRK07050 190 SAGLAFKPF-EH---GVDISVQALTKYQSGGSDVLMGATITADA 229 (394)
T ss_pred ccccccCHH-Hc---CCeEEEEECCceecCCCCeeEEEEEECCH
Confidence 887642222 22 789999999999987654 466666543
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=180.37 Aligned_cols=360 Identities=13% Similarity=0.092 Sum_probs=207.7
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHH-HHHHHhCC--CC--CCcEEEeCChHHHHHHHHHHHhcc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASN-YIKRCLGG--GQ--ADAIIFCGAGTTAAIKRLQEVMGI 162 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ia~~~g~--~~--~~~vift~sGttaal~~l~~~l~~ 162 (625)
++|+.+.+++ +.+.. + .|....+..++.+++.+ ++.+.++. .+ +++|++| +|++++|..++.++..
T Consensus 113 ~~~~~v~e~~-~~~~~---~----~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT-~Ga~~al~~~~~aL~~ 183 (527)
T PRK09275 113 DADEFVYELV-DGIIG---D----NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAV-EGGTAAMCYIFDSLKE 183 (527)
T ss_pred CCCHHHHHHH-HHHhc---C----CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEe-CCHHHHHHHHHHHHhh
Confidence 4467777754 44421 1 12223334555565555 33333322 22 2378888 8999999888776310
Q ss_pred cccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC--CeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 163 TVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL--AEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G--~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
. ..++|||+ |+++.+.|+.+....+..| ++++.++.++ ++.+|+++|+++++ +++++++
T Consensus 184 ~----------~ll~pGD~--Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~-----~~tkai~ 246 (527)
T PRK09275 184 N----------GLLKAGDK--IALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD-----PSIKALF 246 (527)
T ss_pred h----------hcCCCCCE--EEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC-----CCCCEEE
Confidence 0 01589996 9999999999887777665 4555565543 35799999999876 6899999
Q ss_pred EecccCccccccC---HHHHHHHHHH--cCCEEEEeccCcCCC-ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEE
Q 043646 239 FSACSNVTGIYSD---TRSIARLLHQ--YGGFACFDFAASGPY-VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLI 311 (625)
Q Consensus 239 ~~~~~n~TG~~~~---l~~I~~la~~--~g~~vivD~A~~~g~-~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v 311 (625)
+++|+||||.+.+ +++|+++|++ +++++|+|++++.-. ....+... ...--+++.|++|.|+.|+ .+|++++
T Consensus 247 l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~-~~~~~I~v~SfSK~f~mtG~RlG~i~~ 325 (527)
T PRK09275 247 LVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAV-LPYNTILVYSFSKYFGATGWRLGVIAL 325 (527)
T ss_pred EeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHh-CCCCEEEEeehhhhccCcHhHHhhhhc
Confidence 9999999999988 6778888854 599999999965311 11111110 0122467779999998554 3899998
Q ss_pred ecc-----ccccCCCC-------CcccCCceEEeeccccccccccc-------cchhhhhcCCChhHHHHHHH---HHHH
Q 043646 312 SKA-----LYQLGSSP-------PSTCGGGTVNYVNAFDEKDTLYL-------EDIEERENGGTPQIVQMIRA---ALAF 369 (625)
Q Consensus 312 ~~~-----~~~l~~~~-------p~~~ggg~v~~~~~~~~~~~~~~-------~~~~~~~~~gt~~~~~~~~a---al~~ 369 (625)
+++ + +..++ ...++.-+. ....-.+. ..+......|.+...+...+ ..++
T Consensus 326 ~~~~v~~~~--i~~l~~~~~~~~~~ry~~~~~------~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~al 397 (527)
T PRK09275 326 HEDNVFDKL--IAKLPEEKKKELDKRYSSLTT------DPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFAL 397 (527)
T ss_pred CchhHHHHH--HHhccHHHHHHHHhhhhhccC------CcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence 876 2 11110 000000000 00000000 01111223344444443211 1222
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC--------CCCChH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN--------KPLHGP 441 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~--------~~l~~~ 441 (625)
+.......+...+..+..++.+.+.|. + .+.... ..++.+.|.-....... ..+ ...+..
T Consensus 398 l~~~~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~~~----p~g~fY~~~di~~~~~~------~~g~~f~~~l~~~~~~~ 465 (527)
T PRK09275 398 LDEEDAYKKAMKDIIRRRYKALYEGLG-L-PEPEDP----NNAAYYTLIDLEEWAEK------NYGKEFADYLKKNYSPV 465 (527)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHcC-C-CCcCCC----CCeeEEEEEEhHHhhhh------ccCchhhhhhhccCCHH
Confidence 211111234556666666777777772 1 111111 24455555543321000 000 012466
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+++..|.++.||.+.+|..|+. .++++|||+. ..+++++..+.+.|++++.
T Consensus 466 ~f~~~Ll~e~gV~v~PG~~Fg~----------------------------~~~~vRis~a-~~~~~~~~~~~~rl~~~l~ 516 (527)
T PRK09275 466 DLLFRLAEETGVVLLPGGGFGG----------------------------PEWSVRVSLA-NLNEEDYAKIGKAIRKLLD 516 (527)
T ss_pred HHHHHHHhcCCEEEeCchhhCC----------------------------CCCeEEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence 7888888999999999988752 1478999995 2478999999999998886
Q ss_pred hh
Q 043646 522 YG 523 (625)
Q Consensus 522 ~~ 523 (625)
+.
T Consensus 517 ~y 518 (527)
T PRK09275 517 EY 518 (527)
T ss_pred HH
Confidence 64
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=178.36 Aligned_cols=309 Identities=14% Similarity=0.083 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---- 198 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---- 198 (625)
...+++.|+++.|.+ +++++++|+. ++..++.++ +++||. |+++.+.|..+...+
T Consensus 85 ~~~Le~~lA~leg~~---~~iv~~sG~~-Ai~~~l~al---------------~~~Gd~--Vv~~~p~Y~~~~~~~~~~l 143 (427)
T PRK07049 85 SEIVEDRLAVYEGAE---SAALFSSGMS-AIATTLLAF---------------VRPGDV--ILHSQPLYGGTETLLAKTF 143 (427)
T ss_pred HHHHHHHHHHHhCCC---cEEEEccHHH-HHHHHHHHH---------------hCCCCE--EEEcCCCcccHHHHHHHHH
Confidence 456889999999864 3455556776 577776666 578985 888888888775443
Q ss_pred HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH------cCCEEEEeccC
Q 043646 199 RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ------YGGFACFDFAA 272 (625)
Q Consensus 199 ~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~------~g~~vivD~A~ 272 (625)
...|++++.++. ..|++++++++.+....+++++|++++|+||||.+.|+++|.++++. +++++++|++.
T Consensus 144 ~~~Gi~~v~~~~----~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety 219 (427)
T PRK07049 144 RNFGVGAVGFAD----GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTL 219 (427)
T ss_pred HhcCcEEEEEeC----CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCc
Confidence 456888777762 24778888877532222479999999999999999999999999988 89999999996
Q ss_pred cCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 273 SGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 273 ~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
+.+.....+ .. +.|+++.|++|+++|..| +|+++.++++. +.+... ..
T Consensus 220 ~~~~~~~pl-~~---g~divv~S~SK~~gG~~glr~G~vv~~~~l~--~~l~~~------------------------~~ 269 (427)
T PRK07049 220 LGPVFQKPL-EH---GADLSVYSLTKYVGGHSDLVAGAVLGRKALI--RQVRAL------------------------RS 269 (427)
T ss_pred cccccCCcc-cc---CCCEEEEcCceeecCCCCcEEEEEECCHHHH--HHHHHH------------------------HH
Confidence 544322222 22 679999999999997543 68888776652 111100 00
Q ss_pred hhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCC----C-----------CCCcc
Q 043646 351 RENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNT----S-----------VKRQA 413 (625)
Q Consensus 351 ~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~----~-----------~~~~~ 413 (625)
.+..+..+..+. +..+++ ......++..+.+..+.+.|++.|+++ |+.|. + ...++
T Consensus 270 ~~g~~ls~~~a~l~~r~L~-------tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~ 342 (427)
T PRK07049 270 AIGTQLDPHSCWMLGRSLE-------TLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGS 342 (427)
T ss_pred hcCCCCCHHHHHHHHcCCC-------hHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCcc
Confidence 011111222221 111111 233334455667888999999888774 44331 1 12366
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
+++|.+..+.. ....+.+.| +.+.+.+.-|...+. |.......+..+... -.|
T Consensus 343 ~~s~~~~~~~~--------------~~~~f~~~l-~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~---------~~g 398 (427)
T PRK07049 343 TFSFDIKGGQA--------------AAFRFLNAL-QIFKLAVSLGGTESLASHPASMTHSGVPADVRE---------RIG 398 (427)
T ss_pred EEEEEEcCCHH--------------HHHHHHHcC-cccEEcccCCCCCceeeCCCccccccCCHHHHH---------hcC
Confidence 88888743210 023455555 344544444433221 111111122221111 256
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+.++.||||+|. ||++.|++-|++.++
T Consensus 399 i~~~liR~svGl----E~~~dl~~dl~~al~ 425 (427)
T PRK07049 399 VLESTIRLSIGI----EHPDDLIADLAQALD 425 (427)
T ss_pred CCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 778999999996 566667666666554
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-17 Score=173.33 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
..++++.+++++|.+ .+++| +|.++++..++.++ ++|||. | ++.+.+.+....+...|
T Consensus 55 ~~~Leeaia~~~g~~---~vv~t-~~Gt~Al~la~~al---------------~~pGD~--V-~~~~~f~~~~~~i~~~G 112 (431)
T cd00617 55 FYDLEDAVQDLFGFK---HIIPT-HQGRGAENILFSIL---------------LKPGRT--V-PSNMHFDTTRGHIEANG 112 (431)
T ss_pred HHHHHHHHHHHHCCC---eEEEc-CCHHHHHHHHHHHh---------------CCCCCE--E-ccCCcccchHHHHHhCC
Confidence 456888899999985 67888 56677777777766 578983 5 56666777777788899
Q ss_pred CeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---HHHHHHHHHHcCCEEEE
Q 043646 203 AEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACF 268 (625)
Q Consensus 203 ~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l~~I~~la~~~g~~viv 268 (625)
++++.+++++ .+.+|+++|+++|++. ...++++|+++.++|++ |...+ +++|.++|++||+++|.
T Consensus 113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~-~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~ 191 (431)
T cd00617 113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV-GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVL 191 (431)
T ss_pred CEeEEEecccccccccccCCCCCcCHHHHHHHhCcc-cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999863 2569999999999831 11248899999999998 88876 46789999999999999
Q ss_pred eccCcCC-----------CccccCCCC--C-CCCCcEEEEcCCCCCCCCCCceEEEEecc-ccccCCCCCcccCCceEEe
Q 043646 269 DFAASGP-----------YVKINLRSR--N-IDGYDAIFLATHKFLGGPGTPGILLISKA-LYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 269 D~A~~~g-----------~~~id~~~~--~-~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~l~~~~p~~~ggg~v~~ 333 (625)
|+|++.. +....+.+. . ....|.+++|++|-+++|.| |+++.+++ ++. .++.... .+
T Consensus 192 DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~--~~~~~~~-----~~ 263 (431)
T cd00617 192 DAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYE--EARQRVV-----LY 263 (431)
T ss_pred EchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHH--HHHHhcc-----cc
Confidence 9997643 222222111 0 12579999999999887875 88998874 532 2110000 00
Q ss_pred eccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA 413 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~ 413 (625)
+.....|..+..... +++..+.+..-.+.+.++.. .++++.+.|.+. |+.+..|. ++
T Consensus 264 ---------------~~~~~~gG~~~r~~~--A~A~gL~e~~~~~~l~~~~~-~r~~l~~~L~~~-G~~v~~P~----Gg 320 (431)
T cd00617 264 ---------------EGFVTYGGMAGRDME--ALAQGLREAVEEDYLRHRVE-QVRYLGDRLDEA-GVPIVEPA----GG 320 (431)
T ss_pred ---------------CCccccccccHHHHH--HHHHHHHhcccHHHHHHHHH-HHHHHHHHHHHC-CCCccCCC----cc
Confidence 000112222333322 22222112111334444444 468888999887 77777663 45
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCc--hhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAG--PYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~--~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
+..|.-....... .......+..++..|..+.||.+.. |....+ |.+.... .
T Consensus 321 h~v~~d~~~~~~~------~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~-------------------~ 375 (431)
T cd00617 321 HAVFIDAREFLPH------IPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENK-------------------Y 375 (431)
T ss_pred eEEEEEhHHhcCC------CCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCccc-------------------C
Confidence 5555543321000 0011234667887777889998642 332110 1000000 0
Q ss_pred CCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhhcccCccc
Q 043646 491 VKPGWTRITFP-YYMSNEEFEFILAALEFIAAYGHRFLPLYHF 532 (625)
Q Consensus 491 ~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~~~~~y~~ 532 (625)
-....+|+.++ .--|.+++|.+.++|..++++... ++-|.|
T Consensus 376 ~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~ 417 (431)
T cd00617 376 PELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED-IRGLRI 417 (431)
T ss_pred CccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh-CCCeEE
Confidence 01377999996 345899999999999999988543 334433
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=175.95 Aligned_cols=242 Identities=15% Similarity=0.106 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
...+..+++.++++++|.+.-...+++++||..++.+++.+++.. -.+++ .|+++...|.|..+++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~------------~~~gd--~VI~p~~th~S~~kAi 168 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK------------RPKAK--YVIWPRIDQKSCIKAI 168 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc------------CCCCC--EEEEECcChHHHHHHH
Confidence 466788899999999999743346676444434666665555311 01455 4889999999999999
Q ss_pred HHcCCeEEEEec--C-CCCCCCHHHHHHHHHHhhhCCCCeEEEEeccc-CccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 RQSLAEVVEIGL--D-DNGLLDIEALRSQLELYKAAKRPMLGSFSACS-NVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ~~~G~~vv~v~~--~-~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~-n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|++++.|++ + ++..+|+++|+++|++. .+++.++++..++ +.+|..+|+++|+++|++||+|+|+|+|++.
T Consensus 169 ~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~--~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~ 246 (444)
T TIGR03531 169 STAGFEPRVIETVLDGDELTTDVEDIERAIEEI--GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGL 246 (444)
T ss_pred HHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhc--cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcC
Confidence 999999999995 3 35789999999999831 1145555555443 4556889999999999999999999999987
Q ss_pred CCccc-cC--CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 PYVKI-NL--RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 g~~~i-d~--~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+.... .+ .....+.+|++++|+||++..|++.|+++++++-. .+.+.+.+.+ +
T Consensus 247 ~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el-~~~i~~~y~g-----------------------~ 302 (444)
T TIGR03531 247 QSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENF-IQEISKSYPG-----------------------R 302 (444)
T ss_pred cChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHH-HHHHHHhccC-----------------------C
Confidence 55332 11 11111247999999999999888767776754431 2222111110 0
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeC
Q 043646 352 ENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLG 405 (625)
Q Consensus 352 ~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~ 405 (625)
. .+++ .. .+.+.+......|++.+.++..++++++.+.|.++. |-+++.
T Consensus 303 ~-~~s~--~~--~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~ 354 (444)
T TIGR03531 303 A-SASP--SL--DVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLD 354 (444)
T ss_pred C-CChH--HH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeec
Confidence 0 1111 11 122222222445677888888888999999987652 455653
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=180.25 Aligned_cols=297 Identities=14% Similarity=0.090 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCcEEE--eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 119 MTKMVHEASNYIKRCLG--GGQADAIIF--CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g--~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
..++.+.+.+++.+..+ .+++ +|++ | .|++.++..+..++.. .++|||+ |++..+.|+.+
T Consensus 74 ~~~lR~aia~~~~~~~~~~~~~~-~v~~~~t-~G~~~al~~~~~~l~~------------~~~~Gd~--Vlv~~P~y~~~ 137 (404)
T PTZ00376 74 LQSFIEAAQKLLFGEASYALAEK-RIATVQA-LSGTGALRLGFEFLKR------------FLPAGTT--VYVSNPTWPNH 137 (404)
T ss_pred CHHHHHHHHHHhcCCCccccccC-eEEEeec-cCcchHHHHHHHHHHH------------hcCCCCE--EEEcCCCchhH
Confidence 34444444444433222 2334 6773 6 6777777766543210 1578986 99999999999
Q ss_pred HHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEe
Q 043646 195 LLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD 269 (625)
...++..|++++.+++. .++.+|++.+++++.+. .++++++++++++||||.+.+ +++|+++|++||+++++|
T Consensus 138 ~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~--~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 215 (404)
T PTZ00376 138 VNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA--PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFD 215 (404)
T ss_pred HHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 98999999999999984 24689999999998631 135688889999999999977 566788899999999999
Q ss_pred ccCcCCCcc------ccCCCCCCCC-CcEEEEcCCCCCCCCC-CceEEE---Eeccccc--cCCCCCcccCCceEEeecc
Q 043646 270 FAASGPYVK------INLRSRNIDG-YDAIFLATHKFLGGPG-TPGILL---ISKALYQ--LGSSPPSTCGGGTVNYVNA 336 (625)
Q Consensus 270 ~A~~~g~~~------id~~~~~~~~-~D~v~~S~hK~lggp~-g~G~l~---v~~~~~~--l~~~~p~~~ggg~v~~~~~ 336 (625)
+++..-... ..+..+.... --+++.|++|.|+.|+ .+|+++ .++++.. ...+..
T Consensus 216 e~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~------------- 282 (404)
T PTZ00376 216 MAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKL------------- 282 (404)
T ss_pred hhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHH-------------
Confidence 995421110 0111110001 1366779999998554 489984 3443310 000000
Q ss_pred ccccccccccchhhhhcCCChh-HHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeC
Q 043646 337 FDEKDTLYLEDIEERENGGTPQ-IVQMIRAALAFWVKEY-------IGYEVIKKQEDVYIESALGRILPNQ---NIQVLG 405 (625)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~gt~~-~~~~~~aal~~~~~~~-------~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~ 405 (625)
..+...+.++ +.+. ++..++ .+. .-.+.++++.++.++.+.+.|.++. +++++.
T Consensus 283 ------------~~~~~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~ 347 (404)
T PTZ00376 283 ------------IIRPMYSSPPIHGAR--IADRIL-SDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHII 347 (404)
T ss_pred ------------HHhhhcCCCchHHHH--HHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 0001112222 2221 112222 110 0122344566677788888887652 233333
Q ss_pred CCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 406 NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 406 ~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
+ .++.+.|.-. ..++++.|.+++||.+.+|
T Consensus 348 p----~gg~f~~~~~-------------------~~~~~~~L~~~~~v~v~p~--------------------------- 377 (404)
T PTZ00376 348 N----QIGMFSFTGL-------------------TKEQVERLIEKYHIYLLDN--------------------------- 377 (404)
T ss_pred c----CceEEEecCC-------------------CHHHHHHHHHhCCEeecCC---------------------------
Confidence 3 2344443322 2367888888889988632
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ |||++. .+.++++.++++|++++..
T Consensus 378 --------~--Ris~~~-~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 378 --------G--RISVAG-LTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred --------C--eEEEec-cCHHhHHHHHHHHHHHHhc
Confidence 3 999954 6889999999999988653
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=177.44 Aligned_cols=162 Identities=16% Similarity=0.092 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
+......+.+++.++.+-+.. + .++++ +| ++++..++.++ +++||+ |+++...|+++..
T Consensus 60 R~gnPt~~~Le~~la~le~~~-~-~v~~s-SG-~aAi~~~l~al---------------l~~GD~--Vlv~~~~Y~~~~~ 118 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEGSA-G-TILVP-SG-LAAVTVPFLGF---------------LSPGDH--ALIVDSVYYPTRH 118 (395)
T ss_pred CCCChHHHHHHHHHHHHhCCC-C-EEEEC-cH-HHHHHHHHHHh---------------cCCCCE--EEEccCCcHHHHH
Confidence 334455677888998887754 2 45554 65 56677777666 689996 9998888888764
Q ss_pred H----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccC
Q 043646 197 S----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272 (625)
Q Consensus 197 ~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~ 272 (625)
. .+..|++++.++.+ +.+.++++++ ++|++|++++|+||+|.+.|+++|+++||++|+++++|+++
T Consensus 119 l~~~~l~~~Gi~v~~vd~~-----~~e~l~~al~-----~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~ 188 (395)
T PRK05967 119 FCDTMLKRLGVEVEYYDPE-----IGAGIAKLMR-----PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW 188 (395)
T ss_pred HHHHHHHhcCeEEEEeCCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence 3 35579999988643 4577888887 68999999999999999999999999999999999999998
Q ss_pred cCCC--ccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 273 SGPY--VKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 273 ~~g~--~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
+.+. .+++ + |+|+++.|..|+++|-.. .|+++.+++.
T Consensus 189 a~p~~~~pl~---~---GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~ 229 (395)
T PRK05967 189 ATPLYFRPLD---F---GVDISIHAATKYPSGHSDILLGTVSANEKC 229 (395)
T ss_pred cCceecChhH---c---CCCEEEEecccccCCCCCeeEEEEEcCHHH
Confidence 8763 2333 3 899999999999876443 4655555443
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-17 Score=175.07 Aligned_cols=314 Identities=14% Similarity=0.055 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhH
Q 043646 119 MTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNL 195 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~ 195 (625)
..++.+.+.+++++..|. +++ +|++| +|++++|..++.++.-.. ...+||+ |++ ..++|+.+.
T Consensus 76 ~~~LR~aia~~~~~~~g~~v~~~-~I~it-~Ga~~al~~~~~~l~~~~----------~~~~gd~--v~i~~~P~y~~y~ 141 (416)
T PRK09440 76 KDELIEALAALLNERYGWNISPQ-NIALT-NGSQSAFFYLFNLFAGRR----------ADGSLKK--ILFPLAPEYIGYA 141 (416)
T ss_pred CHHHHHHHHHHHHHHhCCCCChh-hEEEc-cChHHHHHHHHHHHhccc----------cCCCCCe--EEEecCCCchhhH
Confidence 445666666666666564 444 79888 899999999988872000 0024664 877 578888776
Q ss_pred HHHHHcC----CeEEEEecCCC---CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCE
Q 043646 196 LSWRQSL----AEVVEIGLDDN---GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGF 265 (625)
Q Consensus 196 ~~~~~~G----~~vv~v~~~~~---~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~ 265 (625)
......+ ..+..++++.+ ..+|+++|+ +. ++++++++++++||||.+.+ +++|+++|++|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~ 214 (416)
T PRK09440 142 DAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID-----EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIP 214 (416)
T ss_pred HHhhccCceeecccccccccccccccCCCHHHcc--cC-----CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCc
Confidence 5443222 22233344332 468998887 33 57899999999999999988 56788899999999
Q ss_pred EEEeccCcCCCccc---cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccc
Q 043646 266 ACFDFAASGPYVKI---NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 266 vivD~A~~~g~~~i---d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (625)
+|+|++++.....+ +.... ...--+++.|++|+ +.|+ .+|+++.++++. +.+...
T Consensus 215 iI~De~Y~~~~~~~~~~~~~~~-~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~--~~~~~~----------------- 273 (416)
T PRK09440 215 LLIDNAYGPPFPGIIFSEATPL-WNPNIILCMSLSKL-GLPGVRCGIVIADEEII--EALSNM----------------- 273 (416)
T ss_pred EEEeCCccccCCCcchhhcCcc-ccCCeEEEeccccc-CCCcceEEEEeCCHHHH--HHHHHH-----------------
Confidence 99999986322111 11110 01223667799996 5564 389999887762 221000
Q ss_pred cccccchhhhhcCCChhHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHhhCCC-C--cEEEeCCCCCCCcce
Q 043646 342 TLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIG----YEVIKKQEDVYIESALGRILPN-Q--NIQVLGNTSVKRQAI 414 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g----~~~i~~~~~~l~~~l~~~L~~l-~--gv~v~~~~~~~~~~i 414 (625)
......+++.+.+.+ +..++ .+..- .+.++...++..+.+.+.|.+. + ++.+..+ .++.
T Consensus 274 -------~~~~~~~~s~~~q~~--~~~~l-~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p----~gg~ 339 (416)
T PRK09440 274 -------NGIISLAPGRLGPAI--AAEMI-ESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKP----EGAI 339 (416)
T ss_pred -------HHHhccCCCcHHHHH--HHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecC----CCce
Confidence 000111222333321 12222 11110 0112232333344444555331 2 3555544 3456
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
+.|...+.. .++..++.+.|. ++||.+++|..|........ +...+
T Consensus 340 fiw~~~~~~-------------~~~~~~~~~~l~-~~gV~v~pg~~F~~~~~~~~--------------------~~~~~ 385 (416)
T PRK09440 340 FLWLWFKDL-------------PITTEELYQRLK-ARGVLVVPGHYFFPGLDEDW--------------------PHAHQ 385 (416)
T ss_pred EEEEECCCC-------------CCCHHHHHHHHH-HCCEEEechHhhCCCCcccc--------------------CCcCc
Confidence 655544421 134567888774 58999999876641100000 00136
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
++||+++. ++++++.+++.|++++...+
T Consensus 386 ~iRis~~~--~~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 386 CIRMNYVQ--DDEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence 89999973 78999999999999876543
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=176.27 Aligned_cols=306 Identities=15% Similarity=0.131 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
++......+++++.++++.|.+. .++| +||+ ++|..++.++ +++||+ |+++...|....
T Consensus 59 ~r~~~P~~~~lE~~la~leg~~~--av~~-sSG~-aAi~~al~al---------------l~~GD~--Vl~~~~~yg~t~ 117 (384)
T PRK06434 59 TRWGNPTVQAFEEKYAVLENAEH--ALSF-SSGM-GAITSAILSL---------------IKKGKR--ILSISDLYGQTF 117 (384)
T ss_pred eCCCChhHHHHHHHHHHHhCCCc--EEEe-CCHH-HHHHHHHHHH---------------hCCCCE--EEEecCccchHH
Confidence 33344567778999999999852 3555 4777 6677776665 578996 777655433332
Q ss_pred ----HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 196 ----LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 196 ----~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
..+...|++++++++++...++ ++. +++++|++.+++|||+.+.|+++|+++||++| +++|.+
T Consensus 118 ~~~~~~~~~~Gi~v~fvd~~~~~~~~-------l~~----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t 184 (384)
T PRK06434 118 YFFNKVLKTLGIHVDYIDTDRLNSLD-------FDP----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDAT 184 (384)
T ss_pred HHHHHHHHhcCcEEEEECCCChhhee-------ecC----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECC
Confidence 3344579999999986422222 221 36899999999999999999999999999998 567999
Q ss_pred CcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 272 ASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 272 ~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
++.++..-.+. . ++|++++|.||+++|++. .|+++.+++.. ...+..
T Consensus 185 ~~s~~~~~pl~-~---gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~-~~~~~~-------------------------- 233 (384)
T PRK06434 185 FASPYNQNPLD-L---GADVVIHSATKYISGHSDVVMGVAGTNNKSI-FNNLVE-------------------------- 233 (384)
T ss_pred CCCcccCCchh-c---CCCEEEeecccccCCCCCceEEEEecCcHHH-HHHHHH--------------------------
Confidence 87766533332 2 799999999999998774 46665544321 111100
Q ss_pred hhhcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------CCCcceEEEEec
Q 043646 350 ERENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------VKRQAILSFLVY 420 (625)
Q Consensus 350 ~~~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------~~~~~i~~f~~~ 420 (625)
.+...|. .+. ..+++.. .+....+.+.++..+++..+.+.|...|.+ +|+.|.- ..-+++++|.+.
T Consensus 234 ~~~~~G~~~~~---~~A~l~~--~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~ 308 (384)
T PRK06434 234 RRKTLGSNPDP---IQAYLAL--RGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR 308 (384)
T ss_pred HHHhcCCCCCH---HHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC
Confidence 0001111 111 1122222 133346666777788899999999999887 4555421 124678888874
Q ss_pred cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
... ....+.+.| +.+.+.+.-|...+ .|+...+..+..+... ..|+.++.||
T Consensus 309 ~~~---------------~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~---------~~gi~~~liR 363 (384)
T PRK06434 309 SME---------------DVHKFIRNL-EIPMVAASLGGVESLITLPVETSHSSLSPEERE---------RLGISDNLVR 363 (384)
T ss_pred CHH---------------HHHHHHHhC-CcceEccCCCCCCeeeECCCccccccCCHHHHH---------hcCCCcCeEE
Confidence 210 122444444 33444444443211 1221112223222211 2577789999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 043646 498 ITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~ 520 (625)
||+|. ||++.|++-|++.+
T Consensus 364 lsvGl----Ed~~dLi~dl~~Al 382 (384)
T PRK06434 364 FSIGI----EDIDDLIKDIENAL 382 (384)
T ss_pred EEeCc----CCHHHHHHHHHHHh
Confidence 99996 56666666666544
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=159.19 Aligned_cols=163 Identities=20% Similarity=0.289 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH-HHHHHc
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LSWRQS 201 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~ 201 (625)
+++++++++++++.+.+ .++++ +|+++++..++.++ .+++++ |+++...|++.. ..+...
T Consensus 2 ~~~~~~~l~~~~~~~~~-~~~~~-~~~t~a~~~~~~~~---------------~~~~~~--v~~~~~~~~~~~~~~~~~~ 62 (170)
T cd01494 2 LEELEEKLARLLQPGND-KAVFV-PSGTGANEAALLAL---------------LGPGDE--VIVDANGHGSRYWVAAELA 62 (170)
T ss_pred HHHHHHHHHHHcCCCCC-cEEEe-CCcHHHHHHHHHHh---------------CCCCCE--EEEeecccceehhhHHHhc
Confidence 46789999999975544 78888 47777888888876 245664 999999999988 677788
Q ss_pred CCeEEEEecCCCCCCCH--HHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc
Q 043646 202 LAEVVEIGLDDNGLLDI--EALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279 (625)
Q Consensus 202 G~~vv~v~~~~~~~ld~--~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i 279 (625)
|++++.++.+.++..+. +.+++... .++++++++++++|++|...|+++|+++|+++|+++|+|++++.+....
T Consensus 63 g~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~ 138 (170)
T cd01494 63 GAKPVPVPVDDAGYGGLDVAILEELKA----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA 138 (170)
T ss_pred CCEEEEeccCCCCccchhhhhhhhccc----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccc
Confidence 99999999876543333 24444332 2579999999999999999999999999999999999999999877765
Q ss_pred ---cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 280 ---NLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 280 ---d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
+... .++|+++.|+||+|++ .+.|+++++
T Consensus 139 ~~~~~~~---~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 139 PGVLIPE---GGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred ccccccc---ccCCEEEEEcccccCC-CceEEEEeC
Confidence 3333 3799999999999997 557999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-17 Score=162.91 Aligned_cols=341 Identities=17% Similarity=0.162 Sum_probs=226.4
Q ss_pred cchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 88 RSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
-.++.|++++-..+.+.| +.|+.- |.-|.... .....+.++.+++||++-. +|--. ||+.|++......
T Consensus 37 ~~S~aV~~A~gS~ltnKYAEGyPgkR-yYgGce~VD~vE~laierak~LFga~~a-nVQPh-SGs~AN~av~~Al----- 108 (413)
T COG0112 37 FTSPAVMEAQGSDLTNKYAEGYPGKR-YYGGCEYVDEVEELAIERAKKLFGAEYA-NVQPH-SGSQANQAVYLAL----- 108 (413)
T ss_pred cCCHHHHHHHhhhhhhccccCCCCcc-ccCCCeeHHHHHHHHHHHHHHHhCCCcc-ccCCC-CchHHHHHHHHHH-----
Confidence 355688898887776655 456553 33455444 4555678899999999876 56666 8999988776554
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHH---HHHcC--CeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS---WRQSL--AEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---~~~~G--~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
++|||. |+-.+..|...+.- ....| .+++.++++. ++.+|.|++++...+ .+||+++
T Consensus 109 -----------l~pGDt--imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e----~kPK~ii 171 (413)
T COG0112 109 -----------LQPGDT--IMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE----VKPKLII 171 (413)
T ss_pred -----------cCCCCe--EecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH----hCCCEEE
Confidence 489996 88777666555422 22233 3677778885 689999999999886 5899887
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec-cccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK-ALYQ 317 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~-~~~~ 317 (625)
+-. +..-...|.+++.++|++.|+++++|.||-.|.+.-...+-....+|+++.|.||.|.||.| |+++.++ ++.
T Consensus 172 ~G~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~- 247 (413)
T COG0112 172 AGG--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRG-GIILTNDEELA- 247 (413)
T ss_pred ECc--cccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCc-eEEEeccHHHH-
Confidence 643 33345689999999999999999999998766543322222123589999999999999998 8888886 442
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
..+....+-|. .|.|...-+++.+.++......+.+...+++..+++.|.+.|.+
T Consensus 248 -kkin~aVFPg~------------------------qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~ 302 (413)
T COG0112 248 -KKINSAVFPGL------------------------QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE 302 (413)
T ss_pred -HHhhhhcCCcc------------------------CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 23322121111 24454444545555554223446667778888889999999987
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
. |+++++.-. ....+..-+. ..++++..+...| ++.||.+.-..-+..+.+.
T Consensus 303 ~-G~~vvsGgT--dnHl~lVDl~--------------~~~~~Gk~ae~~L-~~~~It~NKN~iP~D~~~p---------- 354 (413)
T COG0112 303 R-GFKVVSGGT--DNHLVLVDLR--------------SKGLTGKKAEAAL-ERAGITVNKNAIPFDPESP---------- 354 (413)
T ss_pred c-CCeEecCCc--cceEEEEEcc--------------cCCCCHHHHHHHH-HHcCEeeccCCCCCCCCCC----------
Confidence 5 899886421 1122222222 1245677777777 6689988644333222110
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~~ 523 (625)
..+..|||..+.. ..++|++.+.+.|.+++...
T Consensus 355 -------------~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~ 391 (413)
T COG0112 355 -------------FVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGL 391 (413)
T ss_pred -------------CCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhcc
Confidence 0246688887533 35889999999999888764
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-16 Score=167.89 Aligned_cols=339 Identities=14% Similarity=0.078 Sum_probs=192.1
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| ..|+|..+ .|...+.|.+++.+++......... ...+...++.++++++.+. +
T Consensus 22 G~~~~d~dG---~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~--~ 89 (389)
T PRK01278 22 GVWLIDEDG---ERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNL-------YRIPEQERLAERLVENSFA--D 89 (389)
T ss_pred cCEEEECCC---CEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccc-------cCChHHHHHHHHHHhhCCC--C
Confidence 344444444 34788654 4567789999999988643221110 1133455677888887643 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC--ceEEEEcCCCCchhHHHHHHcCCeEEEE----ecCCC
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE--RWVVFLGPYEHHSNLLSWRQSLAEVVEI----GLDDN 213 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v----~~~~~ 213 (625)
+++|+.+|+.+....+..++.. ...+|+ +..|++....|++....+...+...... +...+
T Consensus 90 -~v~~~~sGseA~~~al~~ar~~------------~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
T PRK01278 90 -KVFFTNSGAEAVECAIKTARRY------------HYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPG 156 (389)
T ss_pred -EEEEcCCcHHHHHHHHHHHHHH------------HHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCC
Confidence 7899877777744444333210 023443 2235555555554443433332221111 11111
Q ss_pred ----CCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCC
Q 043646 214 ----GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLR 282 (625)
Q Consensus 214 ----~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~ 282 (625)
...|+++++++++ +++++|+++.++|++|.+. .+++|.++|++||+++|+|+++. ++... ....
T Consensus 157 ~~~~~~~d~~~l~~~l~-----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~ 231 (389)
T PRK01278 157 FDQVPFGDIEALKAAIT-----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHE 231 (389)
T ss_pred ceEeCCCCHHHHHHhhC-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeec
Confidence 1258999999987 5799999999999999543 58999999999999999999977 22211 1111
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH-HH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQ 361 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~ 361 (625)
..+. .+|+++ +.|.+++...+|++++++++. +.+.+... ....+.+++ ..
T Consensus 232 ~~~~-~pdi~t--~sK~l~~G~~ig~~~~~~~~~--~~~~~~~~------------------------~~t~~~~~~~~a 282 (389)
T PRK01278 232 WAGV-TPDIMA--VAKGIGGGFPLGACLATEEAA--KGMTPGTH------------------------GSTYGGNPLAMA 282 (389)
T ss_pred ccCC-CCCEEE--EehhccCCcceEEEEEcHHHH--hccCCCCC------------------------CCCCCccHHHHH
Confidence 1111 357655 459997433489999988772 33321110 011122222 22
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
.+.++++.+ +. +...++.+.+.+++.++|.. .+++ +... ...+..+.+.. ..
T Consensus 283 aa~a~l~~l--~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~v-~g~G~~~~i~~-~~--------------- 338 (389)
T PRK01278 283 VGNAVLDVI--LA---PGFLDNVQRMGLYLKQKLEGLVDRFPDV--IEEV-RGKGLLLGLKC-VV--------------- 338 (389)
T ss_pred HHHHHHHHH--hh---hHHHHHHHHHHHHHHHHHHHHHhhCCCc--eeeE-ecccEEEEEEE-ec---------------
Confidence 233445544 11 12334455555555555543 3321 1111 11222222222 11
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
+..++++.|.+ .||.+.++. .+++||++++.+++++++++++.|+
T Consensus 339 -~~~~~~~~l~~-~GV~~~p~~---------------------------------~~~lR~~p~~~~~~~~i~~~l~~l~ 383 (389)
T PRK01278 339 -PNRDLVQALRD-EGLLTVGAG---------------------------------DNVVRLLPPLIITEEEIDEALERLE 383 (389)
T ss_pred -CHHHHHHHHHH-CCeEEeecC---------------------------------CCEEEEeCCcccCHHHHHHHHHHHH
Confidence 24578888876 499987541 3789999998899999999999999
Q ss_pred HHHHh
Q 043646 518 FIAAY 522 (625)
Q Consensus 518 ~~~~~ 522 (625)
+++.+
T Consensus 384 ~~l~~ 388 (389)
T PRK01278 384 RAAES 388 (389)
T ss_pred HHHHh
Confidence 88754
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-17 Score=173.46 Aligned_cols=198 Identities=16% Similarity=0.106 Sum_probs=133.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcE--EEeCChHHHHHHHHHHHhcccccc
Q 043646 91 RYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAI--IFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 91 ~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~v--ift~sGttaal~~l~~~l~~~~~~ 166 (625)
+.+.+++.+.+... ....|....+..++.+.+.+++.+..+. +++ +| ++| +|++++|..+++++.
T Consensus 47 ~~l~~a~~~~~~~~----~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-~i~v~iT-~Ga~~al~~~~~~l~----- 115 (396)
T PRK09257 47 RAVKKAEARLLETE----TTKNYLPIEGLAAYRQAVQELLFGADSPALAAG-RVATVQT-PGGTGALRVGADFLK----- 115 (396)
T ss_pred HHHHHHHHHhcccc----cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccC-eEEEEec-CCccHHHHHHHHHHH-----
Confidence 67777776654321 1111222223344444455544433332 343 55 787 899999999887652
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
.++|||+ |+++.+.|+.+...++..|++++.+|+ +. ++.+|+++|++++++. .++++++++++++|
T Consensus 116 --------~~~pGd~--Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--~~~~~~~i~~~p~N 183 (396)
T PRK09257 116 --------RAFPDAK--VWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA--PAGDVVLLHGCCHN 183 (396)
T ss_pred --------HhCCCCe--EEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC--CCCCEEEEeCCCCC
Confidence 1378986 999999999999889999999999997 33 4679999999988731 13467888899999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCCC-CCCCcEEEEcCCCCCCCCC-CceEEEE
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSRN-IDGYDAIFLATHKFLGGPG-TPGILLI 311 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~l~v 311 (625)
|||.+.+ +++|+++|++||+++++|+++..-... ..+..+. ...--+++.|++|.|+.|+ .+|++++
T Consensus 184 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 184 PTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 9999977 567888999999999999996531110 0111110 0112366789999998433 4899874
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=169.77 Aligned_cols=321 Identities=14% Similarity=0.097 Sum_probs=183.8
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.+..++.+.+++.+.+.... .... ....+...++++++++++|.+ +++++.+| ++++..++.++.....
T Consensus 41 lG~~~p~v~~a~~~~~~~~~-~~~~------~~~~~~~~~l~~~la~~~g~~---~~~~~~sg-~~a~~~a~~~~~~~~~ 109 (379)
T TIGR00707 41 LGHAHPKLVEALKEQLEKLV-HVSN------LYYTEPQEELAEKLVEHSGAD---RVFFCNSG-AEANEAALKLARKYTG 109 (379)
T ss_pred CCCCCHHHHHHHHHHHhhcc-cccc------ccCCHHHHHHHHHHHhhCCCC---EEEEeCCc-HHHHHHHHHHHHHHhh
Confidence 44566899999988885431 1111 012356778999999999874 67777444 4445544444310000
Q ss_pred chhhhhhhhccC-CCCceEEEEcCCCCchhHHHHHHcCCeEE----EEecCCCC----CCCHHHHHHHHHHhhhCCCCeE
Q 043646 166 SIMRDKLITSLR-DEERWVVFLGPYEHHSNLLSWRQSLAEVV----EIGLDDNG----LLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 166 ~~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv----~v~~~~~~----~ld~~~L~~~l~~~~~~~~~~l 236 (625)
..+ ++++ |++....|+.........+.... ..++..+. ..|+++|++.++ +++++
T Consensus 110 ---------~~~~~~~~--vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~ 173 (379)
T TIGR00707 110 ---------DKGKEKKK--IIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID-----DETAA 173 (379)
T ss_pred ---------ccCCCCCe--EEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh-----hCeeE
Confidence 001 2454 55555444433323322232221 12222211 128999999987 47899
Q ss_pred EEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 237 GSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 237 v~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
|++++++|++|... ++++|.++|+++|+++++|++++ ++... ....... ...|+++ ++|.+++...+|++
T Consensus 174 v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~-~~~d~~t--~sK~~~~G~riG~~ 250 (379)
T TIGR00707 174 VIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYG-IEPDIIT--LAKGLGGGVPIGAT 250 (379)
T ss_pred EEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcC-CCCCEEE--EcccccCCcccEEE
Confidence 99988888888653 37899999999999999999976 33211 1111111 1356654 56999844468999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
++++++ ++.+.+...+ ...+. +.....+.++++.+ + ...+.++.++++
T Consensus 251 ~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~aa~aaL~~~--~---~~~~~~~~~~~~ 299 (379)
T TIGR00707 251 LAKEEV--AEAFTPGDHG------------------------STFGGNPLACAAALAVLEVI--E---KERLLENVKEKG 299 (379)
T ss_pred EEcHHH--HhhhcCCCCC------------------------CCCCCCHHHHHHHHHHHHHH--H---hhhHHHHHHHHH
Confidence 998877 3333221100 01122 22222233444443 2 123556667777
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
++++++|.++ +...........+.++.+. .+. +..++.+.|.+ .||.++++.
T Consensus 300 ~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~-~~~----------------~~~~~~~~l~~-~Gv~v~~~~--------- 351 (379)
T TIGR00707 300 DYFKERLEEL-GKNYPNKEVRGKGLMLGIE-LEA----------------PCKDIVKKALE-KGLLVNCAG--------- 351 (379)
T ss_pred HHHHHHHHHH-HhhCCCCccccCceEEEEE-ecC----------------cHHHHHHHHHH-CCcEEeeCC---------
Confidence 7777777653 1111101001122333333 221 14578888855 799998531
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.+++||++++.++++++++++++|+++
T Consensus 352 ------------------------~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 352 ------------------------PKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred ------------------------CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 378999999889999999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-16 Score=156.99 Aligned_cols=325 Identities=18% Similarity=0.178 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-- 197 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-- 197 (625)
......++++|+.+-|.-.. +.+.||..+....+... .++||. |+.++.=|......
T Consensus 61 NPT~~vlE~RiAaLEGG~aa---~a~aSG~AA~~~ai~~l----------------a~aGD~--iVss~~LYGGT~~lf~ 119 (426)
T COG2873 61 NPTTDVLEERIAALEGGVAA---LAVASGQAAITYAILNL----------------AGAGDN--IVSSSKLYGGTYNLFS 119 (426)
T ss_pred CchHHHHHHHHHHhhcchhh---hhhccchHHHHHHHHHh----------------ccCCCe--eEeeccccCchHHHHH
Confidence 33455688999999887544 34446666644444333 478996 88777666554433
Q ss_pred --HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 198 --WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 198 --~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
++..|++|++|..+ |++.++++|+ ++||+|.+....||-+.+.|++.|+++||++|++++||.+-+.+
T Consensus 120 ~tl~~~Gi~v~fvd~~-----d~~~~~~aI~-----~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atp 189 (426)
T COG2873 120 HTLKRLGIEVRFVDPD-----DPENFEAAID-----ENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATP 189 (426)
T ss_pred HHHHhcCcEEEEeCCC-----CHHHHHHHhC-----cccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcc
Confidence 46689999999865 7999999999 69999999999999999999999999999999999999998887
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEeccccccCC--CCCcccCCceEEeeccccccccccccchhhhh
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISKALYQLGS--SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~~~~~l~~--~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
+..-.++- |+|+|+.|..||+||-+. +|-+++.....+... ..|.+.. .+..|. .+..-.
T Consensus 190 yl~rP~~h----GADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~------------p~p~Yh-Gl~~~~ 252 (426)
T COG2873 190 YLCRPIEH----GADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTT------------PDPSYH-GLVYTE 252 (426)
T ss_pred eecchhhc----CCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCC------------CCcccc-ceehhh
Confidence 65444432 899999999999997653 677777655422111 0111100 000000 000001
Q ss_pred cCCChhHHHHHHH-----------HHHHHHHhhcCHH---HHHHHHHHHHHHHHHhhCCCCcEEEeCCC-----------
Q 043646 353 NGGTPQIVQMIRA-----------ALAFWVKEYIGYE---VIKKQEDVYIESALGRILPNQNIQVLGNT----------- 407 (625)
Q Consensus 353 ~~gt~~~~~~~~a-----------al~~~~~~~~g~~---~i~~~~~~l~~~l~~~L~~l~gv~v~~~~----------- 407 (625)
..|.+.+...++. ....|+ -..|.| -+.+|..+++..+.+.|.+.|.+..+.-.
T Consensus 253 ~~g~~af~~~~r~~~lRDlGa~lsPfnAfl-~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la 331 (426)
T COG2873 253 TFGNAAFIIKARVQLLRDLGATLSPFNAFL-LLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALA 331 (426)
T ss_pred hcccHHHHHHHHHHHHHhcccccCcHHHHH-HHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHH
Confidence 1222222211110 011111 112444 23455566788899999998877654311
Q ss_pred ----CCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHH
Q 043646 408 ----SVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 408 ----~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~ 480 (625)
+...+++++|-+..+.+ ....+++.| +.+--.+.-|..-+ .|....+..++++.-.+
T Consensus 332 ~kyl~~g~g~vltF~~kgg~e--------------a~~~fi~~l-~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~- 395 (426)
T COG2873 332 KKYLPKGAGAVLTFGVKGGYE--------------AGKKFIDAL-KLFSHLANIGDARSLVIHPASTTHRQLSEEEQAA- 395 (426)
T ss_pred HhhccCCCceEEEEEecChHH--------------HHHHHHHHH-HHHHhhccccccceeEecCcccchhcCCHHHHHh-
Confidence 12356789998865421 112333333 22222222222111 13333344555433332
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 481 RSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.|+.++.||+|+|. ||++.+++-|++.++
T Consensus 396 --------aGv~~~~IRlSVGI----Ed~~DiiaDl~qAl~ 424 (426)
T COG2873 396 --------AGVTPDLIRLSVGI----EDIDDIIADLEQALE 424 (426)
T ss_pred --------cCCCCCcEEEEecc----CCHHHHHHHHHHHHh
Confidence 67889999999985 777777777776554
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-17 Score=169.14 Aligned_cols=238 Identities=21% Similarity=0.193 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++.+|+.+|++. ..|.-+|||.++..++.++ +++||+ |+++...|-|+..++..
T Consensus 66 G~I~eAe~~aA~~fGAd~---t~flvnGsT~g~~a~i~a~---------------~~~gd~--VLv~RN~HkSv~~alil 125 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADK---TFFLVNGSTSGNQAMIMAL---------------CRPGDK--VLVDRNCHKSVYNALIL 125 (417)
T ss_dssp THHHHHHHHHHHHHTESE---EEEESSHHHHHHHHHHHHH---------------TTTTCE--EEEETT--HHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCe---EEEEecCchHHHHHHHHHh---------------cCCCCE--EEEcCCcHHHHHHHHHH
Confidence 467889999999999974 3454589999999988887 589996 99999999999999999
Q ss_pred cCCeEEEEecCCC-----CCCCH-----HHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 201 SLAEVVEIGLDDN-----GLLDI-----EALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 201 ~G~~vv~v~~~~~-----~~ld~-----~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
.|+.+++++...+ +.+++ +.++++|+++.....+++|++++| |..|.+.|+++|+++||++|+.|+||+
T Consensus 126 ~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDE 204 (417)
T PF01276_consen 126 SGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHKHGIPLLVDE 204 (417)
T ss_dssp HTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-
T ss_pred cCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcccCCEEEEEc
Confidence 9999999876431 24566 999999986411112456888876 577999999999999999999999999
Q ss_pred cCcCCC--ccccCCCCCCCCCc-------EEEEcCCCCCCCCCCceEEEEeccc-cccCCCCCcccCCceEEeecccccc
Q 043646 271 AASGPY--VKINLRSRNIDGYD-------AIFLATHKFLGGPGTPGILLISKAL-YQLGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 271 A~~~g~--~~id~~~~~~~~~D-------~v~~S~hK~lggp~g~G~l~v~~~~-~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
||+.-. .++...... -++| +++-|.||.+++....++|.++... +..+.
T Consensus 205 AhGah~~F~~lp~~a~~-~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~-------------------- 263 (417)
T PF01276_consen 205 AHGAHFGFHPLPRSALA-LGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHER-------------------- 263 (417)
T ss_dssp TT-TTGGCSGGGTTCSS-TTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHH--------------------
T ss_pred cccccccCCCCccchhh-ccCccccccceeeeechhhcccccccceEEEecCCCcccHHH--------------------
Confidence 987522 122211211 2788 9999999999988888999998875 21000
Q ss_pred ccccccchhhhhcCCChhHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHhh---CCCCcEEEeCCC
Q 043646 341 DTLYLEDIEERENGGTPQIVQMIRAALAFWVK---EYIGYEVIKKQEDVYIESALGRI---LPNQNIQVLGNT 407 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~---~~~g~~~i~~~~~~l~~~l~~~L---~~l~gv~v~~~~ 407 (625)
....-..+...+|+++-++ +++.... ...|. .+.++...++..++++| .++++++++++.
T Consensus 264 ----~~~~l~~~~TTSPSY~lmA--SlD~a~~~m~~~~G~-~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~ 329 (417)
T PF01276_consen 264 ----VNEALSMHQTTSPSYPLMA--SLDVARAQMEEEEGR-ELLEEAIELAEEFRKKINRLNDIWGFKVLGPE 329 (417)
T ss_dssp ----HHHHHHHHS-SS--HHHHH--HHHHHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHHCCT-SSEESS-S
T ss_pred ----HHHHHHHHcCCChHHHHHH--HHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHhcCCCceEecCCcc
Confidence 0000122333445544432 2333221 12233 44555666678888888 788889988875
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-16 Score=165.86 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=109.2
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecC-CCCCCCH
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLD-DNGLLDI 218 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~-~~~~ld~ 218 (625)
+|++| +|+++++..++.++ .++||+ |++..+.|+.+...+. ..|++++.+|+. +++.+|+
T Consensus 71 ~I~it-~G~~~al~~~~~~l---------------~~~gd~--Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~ 132 (388)
T PRK08637 71 LPIVT-NALTHGLSLVADLF---------------VDQGDT--VLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDT 132 (388)
T ss_pred eeeEc-cchHHHHHHHHHHh---------------cCCCCE--EEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCH
Confidence 67887 89999999998887 578886 9999999988876654 579999999984 4556899
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHH-----cCCEEEEeccCcCCC----ccccC-CCC-
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQ-----YGGFACFDFAASGPY----VKINL-RSR- 284 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~-----~g~~vivD~A~~~g~----~~id~-~~~- 284 (625)
++++++++.. ..+..+++++++|+||||.+.+. ++|+++|++ |++++++|+++.--. ....+ ...
T Consensus 133 ~~l~~~~~~~-~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~ 211 (388)
T PRK08637 133 DALKEALQAA-YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALA 211 (388)
T ss_pred HHHHHHHHhh-ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhh
Confidence 9999988621 11345688899999999999774 566676664 899999999964211 11111 110
Q ss_pred CC-CCCcEE-EEcCCCCCCCCCC-ceEEEEec
Q 043646 285 NI-DGYDAI-FLATHKFLGGPGT-PGILLISK 313 (625)
Q Consensus 285 ~~-~~~D~v-~~S~hK~lggp~g-~G~l~v~~ 313 (625)
.. +.+-++ +.|++|.++.|+- +|++++..
T Consensus 212 ~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~ 243 (388)
T PRK08637 212 NLHSNILAVKLDGATKEEFVWGFRVGFITFGT 243 (388)
T ss_pred cccccceEEEeccccccCCCcccceEEEEEcc
Confidence 00 122122 3389998876753 89998753
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=160.40 Aligned_cols=327 Identities=14% Similarity=0.159 Sum_probs=189.2
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ -|+|..+. |..++.|.+++.+.+...... .. ....+...++.+++++..+. +
T Consensus 20 G~~~~d~~G~---~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~------~~~~~~~~~la~~l~~~~~~--~ 87 (377)
T PRK02936 20 GTKVTDNNGK---TYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV-SN------LFTNSLQEEVASLLAENSAG--D 87 (377)
T ss_pred cCEEEeCCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc-cc------ccCCHHHHHHHHHHHhcCCC--C
Confidence 3445555453 37775333 567789999999988643211 11 01134455566666665543 2
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe------------EEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE------------VVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~ 207 (625)
.++|+++|+.++...+..++. -+|++.+|......|.+....+...+.. +..
T Consensus 88 -~~~~~~sG~~a~~~A~~~a~~---------------~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (377)
T PRK02936 88 -LVFFCNSGAEANEAALKLARK---------------HTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTH 151 (377)
T ss_pred -EEEEeCCcHHHHHHHHHHHHH---------------hcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceE
Confidence 688887888875555543331 1343334555567777666555544321 122
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCc--ccc
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYV--KIN 280 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~--~id 280 (625)
++. -|+++|++.+. +++++|+++.+.+++|...+ +++|.++|++||+++|+|+++. ++.. .+.
T Consensus 152 ~~~-----~d~~~l~~~~~-----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~ 221 (377)
T PRK02936 152 VPF-----NDIKALKEVMN-----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFA 221 (377)
T ss_pred eCC-----CCHHHHHHhcc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhH
Confidence 222 27899999886 57899999999999887743 8999999999999999999975 2221 111
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
....+. ..|+++ +.|.+++...+|+++.++++. +.+.+.. .....+.+++.
T Consensus 222 ~~~~~~-~~di~t--~sK~l~~G~~ig~v~~~~~~~--~~~~~~~------------------------~~~t~~~~~~~ 272 (377)
T PRK02936 222 YEQFGL-DPDIVT--VAKGLGNGIPVGAMIGKKELG--TAFGPGS------------------------HGSTFGGNPLA 272 (377)
T ss_pred HHhhCC-CCcEEE--EcccccCCCccEEEEEcHHHH--hhccCCC------------------------CCCCCCCCHHH
Confidence 111111 357654 569997322378888887762 2221110 00111223332
Q ss_pred -HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 361 -QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 361 -~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
..+.++++... . +...++.+++.+++++.|.+ ++.+..+.+ .+.++.+.+..
T Consensus 273 ~aaa~a~l~~~~-~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~----~g~~~~i~~~~-------------- 329 (377)
T PRK02936 273 MAAAKEVLQVIK-Q----PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG----KGLMIGIECTE-------------- 329 (377)
T ss_pred HHHHHHHHHHHH-h----ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee----cceEEEEEecc--------------
Confidence 22334444431 1 12334444445555555543 343332222 22333333321
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
....+.+.|. +.||.+.++ ..+++||+++..++++++++++++
T Consensus 330 ---~~~~~~~~l~-~~gv~v~~~---------------------------------g~~~lRi~p~~~~~~~~i~~~i~~ 372 (377)
T PRK02936 330 ---EVAPVIEQLR-EEGLLVLSA---------------------------------GPNVIRLLPPLVVTKEELDQAVYL 372 (377)
T ss_pred ---hHHHHHHHHH-HCCeEEecC---------------------------------CCCEEEEECCcccCHHHHHHHHHH
Confidence 1346777774 479988642 137899999989999999999999
Q ss_pred HHHH
Q 043646 516 LEFI 519 (625)
Q Consensus 516 L~~~ 519 (625)
|+++
T Consensus 373 l~~~ 376 (377)
T PRK02936 373 LKKV 376 (377)
T ss_pred HHHh
Confidence 9865
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-16 Score=163.42 Aligned_cols=312 Identities=18% Similarity=0.181 Sum_probs=185.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
+.+++........+++.|+++.|+. .++.++||..| +..++.++ +++||. |+++..-|.
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~g~---~a~~~~SGmaA-i~~~l~~l---------------l~~Gd~--iv~~~~~Y~ 105 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEGGE---DALLFSSGMAA-ISAALLAL---------------LKPGDH--IVASDDLYG 105 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT-S---EEEEESSHHHH-HHHHHHHH---------------S-TTBE--EEEESSSSH
T ss_pred cceeccccccHHHHHHHHHHhhccc---ceeeccchHHH-HHHHHHhh---------------cccCCc--eEecCCccC
Confidence 3345555666778999999999984 34444466555 65555555 578885 777777777
Q ss_pred hhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC-CEEE
Q 043646 193 SNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG-GFAC 267 (625)
Q Consensus 193 s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g-~~vi 267 (625)
.....++ ..|+++.+++.. |+++|+++++ +++++|.+..|+||+..+.|+++|+++||++| ++++
T Consensus 106 ~t~~~~~~~l~~~gv~v~~~d~~-----d~~~l~~~l~-----~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~v 175 (386)
T PF01053_consen 106 GTYRLLEELLPRFGVEVTFVDPT-----DLEALEAALR-----PNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVV 175 (386)
T ss_dssp HHHHHHHHCHHHTTSEEEEESTT-----SHHHHHHHHC-----TTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEE
T ss_pred cchhhhhhhhcccCcEEEEeCch-----hHHHHHhhcc-----ccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEE
Confidence 7655544 369999988754 8999999998 68999999999999999999999999999999 9999
Q ss_pred EeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec--cccccCCCCCcccCCceEEeeccccccccc
Q 043646 268 FDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK--ALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 268 vD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~--~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
||.+.+.++..-.+. + |+|+++.|..|+++|-.. .|++++++ ++.. .+.
T Consensus 176 VDnT~atp~~~~pL~-~---GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~--~l~--------------------- 228 (386)
T PF01053_consen 176 VDNTFATPYNQNPLE-L---GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYD--RLR--------------------- 228 (386)
T ss_dssp EECTTTHTTTC-GGG-G---T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHH--HHH---------------------
T ss_pred eeccccceeeeccCc-C---CceEEEeeccccccCCcceeeEEEEECchhhhhh--hhc---------------------
Confidence 999977664322222 2 899999999999987653 47777665 2210 000
Q ss_pred cccchhhhhcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------
Q 043646 344 YLEDIEERENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS------------- 408 (625)
Q Consensus 344 ~~~~~~~~~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~------------- 408 (625)
..+...|. .+..... +++........+.++..+.+..+.+.|.+.|.++ |+.|.-
T Consensus 229 -----~~~~~~G~~~~p~da~-----ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~ 298 (386)
T PF01053_consen 229 -----EFRRLLGATLSPFDAW-----LLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQM 298 (386)
T ss_dssp -----HHHHHHT-B--HHHHH-----HHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHC
T ss_pred -----chhhhcCccchHHHHH-----HHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecc
Confidence 01111122 1111110 0111222344455566667899999999999885 654420
Q ss_pred CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHH
Q 043646 409 VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 409 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
...+++++|.+..+. -....+.+.| +.+.+.+.-|...+. |....+..++.+...+
T Consensus 299 ~g~ggl~sf~l~~~~--------------~~~~~f~~~l-~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~------ 357 (386)
T PF01053_consen 299 SGGGGLLSFELKGGE--------------EAARRFLDAL-KLFSIAPSLGGVESLISHPASTSHRSLSPEERAE------ 357 (386)
T ss_dssp SSCTSEEEEEESSHH--------------HHHHHHHHH--SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHH------
T ss_pred cccCceeEEEeccch--------------hhhHhHHhhh-hhHhhhhhcCCcccccccccchhhccCChhhhhc------
Confidence 234578888886421 0123455555 334344443433221 2222122333222222
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.|+.++.||||+|. ||.+.|++-|++.+
T Consensus 358 ---~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL 385 (386)
T PF01053_consen 358 ---AGISDGLIRLSVGL----EDPDDLIADLEQAL 385 (386)
T ss_dssp ---TTS-TTEEEEE--S----S-HHHHHHHHHHHH
T ss_pred ---cCCCCCeeEEEecc----CCHHHHHHHHHHhc
Confidence 56778999999996 66777777766654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-15 Score=161.42 Aligned_cols=344 Identities=13% Similarity=0.101 Sum_probs=204.6
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..|+ -|+|..+ .|...+.|.+++.+++...+.. +.. ...+...++.++|+++++. +
T Consensus 26 G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~------~~~~~~~~la~~L~~~~~~--~ 93 (397)
T TIGR03246 26 GSRVWDQQGK---EYIDFAGGIAVNALGHAHPELVKALIEQADKLWHI-GNG------YTNEPVLRLAKKLVDATFA--D 93 (397)
T ss_pred cCEEEeCCCC---EEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccc-cCc------cCCHHHHHHHHHHHhhCCC--C
Confidence 4555555453 4777644 5567889999999988643211 110 1134456788899998864 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~ 207 (625)
.+.|++||+.++...+-.++..... | -.++...+|......|.+...++...+. .+..
T Consensus 94 -~~~f~~SGseA~e~Alk~ar~~~~~---~------~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
T TIGR03246 94 -KVFFCNSGAEANEAALKLARRYALD---K------HGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKH 163 (397)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHHHh---c------CCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEE
Confidence 6888888999855555443311000 0 0123333555666777776655554332 2223
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCccc--c
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVKI--N 280 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~i--d 280 (625)
++. .|++++++++. +++++|+++.++++.|.+. .+++|.++|++||+++|+|+++. +|.... .
T Consensus 164 ~~~-----~d~~~l~~~l~-----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a 233 (397)
T TIGR03246 164 APY-----NDLAAAKALIS-----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYA 233 (397)
T ss_pred eCC-----CCHHHHHHHhc-----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchh
Confidence 332 38899999886 5789999998888888664 38999999999999999999973 221111 1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
....+. .+|++++ .|.+++...+|++++++++. +.+..... +.+ + .+.|...
T Consensus 234 ~~~~gv-~pDi~t~--~K~lggG~pigav~~~~~i~--~~~~~~~~-~~t---------------------~-~~~p~~~ 285 (397)
T TIGR03246 234 YMHYGV-TPDILTS--AKALGGGFPIGAMLTTTEIA--AHLKVGTH-GTT---------------------Y-GGNPLAC 285 (397)
T ss_pred hhhcCC-CCCEEEe--ehhhhCCcceeEEEEcHHHH--HhccCCCc-CCC---------------------C-CCCHHHH
Confidence 111111 4687755 59996434478999988873 22221110 000 1 1334333
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
..+.++++.+ + .+.+.++.+.+.+++.+.|+++.. ..++... ...+.++.+.+.+.. .-.
T Consensus 286 aaa~a~l~~~--~---~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~v-rg~G~~~~i~~~~~~-------------~~~ 346 (397)
T TIGR03246 286 AVAGKVLDLV--N---TPELLAGVKQRHDLFVDGLEKINARYNVFSEI-RGKGLLIGAVLTEAY-------------QGK 346 (397)
T ss_pred HHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHhcCCCeEee-ecCceEEEEEEcCch-------------hhH
Confidence 3334445543 2 235667777788888888866521 1111111 112333333332210 002
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+++.|.+ +||.+.+. .++++|+++++.+|++|+++++++|+++
T Consensus 347 ~~~~~~~l~~-~Gv~~~~~---------------------------------g~~~lR~~p~~~~t~~~i~~~~~~l~~~ 392 (397)
T TIGR03246 347 AKQFVNAAAE-EGVIALIA---------------------------------GPNVVRFAPSLVISDDDIDEGLARFERA 392 (397)
T ss_pred HHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4567777765 69987631 1378999999999999999999999988
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+..
T Consensus 393 l~~ 395 (397)
T TIGR03246 393 IEQ 395 (397)
T ss_pred HHH
Confidence 754
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-15 Score=160.55 Aligned_cols=338 Identities=15% Similarity=0.113 Sum_probs=189.0
Q ss_pred ccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+....|+ -|+|..+. ++..+.+.+++.+.+....... . ........++.++++++.+. +
T Consensus 31 ~~~~d~dg~---~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~------~~~~~~~~~la~~l~~~~~~--~- 97 (396)
T PRK02627 31 ARLWDDDGK---EYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTS-N------LYYIEPQEELAEKLVELSGM--D- 97 (396)
T ss_pred CEEEeCCCC---EEEECCccHHhccCCCCCHHHHHHHHHHHhhccccc-c------ccCCHHHHHHHHHHHhhcCC--C-
Confidence 334444443 47776543 4445789999988775421111 1 01245667788889888765 3
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHcCCeEEE---EecCCCC--
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQSLAEVVE---IGLDDNG-- 214 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~G~~vv~---v~~~~~~-- 214 (625)
+++|+. |.++++..++++.... .+ + ...+.+ .|++. ...|.....+....+..... .++..+.
T Consensus 98 ~v~~~~-gg~eA~~~al~~a~~~-~~----~---~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (396)
T PRK02627 98 KVFFCN-SGAEANEAAIKLARKY-GH----K---KGIEKP--EIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIY 166 (396)
T ss_pred EEEECC-CcHHHHHHHHHHHHHH-hc----c---cCCCCC--eEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceE
Confidence 789985 4555555555533100 00 0 000112 35544 44554444334333322211 1111110
Q ss_pred --CCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc-ccC---HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCC
Q 043646 215 --LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI-YSD---TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRN 285 (625)
Q Consensus 215 --~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~-~~~---l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~ 285 (625)
..|+++|++++. +++++|+++.++|++|. ..+ +++|.++|++||+++|+|++++ ++... ......+
T Consensus 167 ~~~~d~~~l~~~i~-----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~ 241 (396)
T PRK02627 167 VPFNDIEALKAAIT-----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYG 241 (396)
T ss_pred eCCCCHHHHHHhcC-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcC
Confidence 128999999886 57999999999999995 333 7899999999999999999976 33221 1111111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMIR 364 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~ 364 (625)
. .+|+++ +.|.+++...+|++++++++. +.+.+.... ...+.+++. .++.
T Consensus 242 ~-~pdi~t--~sK~~~~G~rig~~~~~~~~~--~~~~~~~~~------------------------~t~~~~~~~~~aa~ 292 (396)
T PRK02627 242 I-EPDIMT--LAKGLGGGVPIGAVLAKEKVA--DVFTPGDHG------------------------STFGGNPLACAAAL 292 (396)
T ss_pred C-CCCEEE--EcchhhCCcccEEEEEcHHHH--hccCCCCCC------------------------CCCCCCHHHHHHHH
Confidence 1 357665 459998434589999988872 333211100 011222222 2223
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
++++.. +. +.+.++.+++.+++.+.|.+ .+.+..... .+.++.+.. .. +.
T Consensus 293 ~~l~~~--~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~i~~-~~----------------~~ 346 (396)
T PRK02627 293 AVIEII--EE---EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRG----LGLMIGIEL-DR----------------PA 346 (396)
T ss_pred HHHHHH--hh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeecc----CcEEEEEEe-cC----------------cH
Confidence 334433 11 23344555555555555443 332222111 223333322 21 24
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++.|.+ .||.+.++. .+++|+++++.+++++++++++.|++++
T Consensus 347 ~~~~~~l~~-~Gv~v~~~~---------------------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~l 392 (396)
T PRK02627 347 AEIVKKALE-KGLLINVTG---------------------------------DNVLRLLPPLIISKEEIDEAVDRLEEVL 392 (396)
T ss_pred HHHHHHHHH-CCeEEeecC---------------------------------CCEEEEECCcccCHHHHHHHHHHHHHHH
Confidence 578888866 499997531 2679999998899999999999999887
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
++
T Consensus 393 ~~ 394 (396)
T PRK02627 393 KE 394 (396)
T ss_pred Hh
Confidence 54
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-16 Score=164.94 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhcc-CCCCceEEEEcCCCCchh
Q 043646 118 RMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL-RDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~ 194 (625)
+..++.+.+.+++.+..|. +++ +|++| +|++.+|..++.++ + ++||+ |+++.+.|+.+
T Consensus 108 G~~~LR~aia~~~~~~~g~~~~~~-~I~it-~Ga~~al~~~~~~l---------------~~~pGd~--Vli~~P~Y~~y 168 (407)
T PLN02368 108 GLPGVRKEVAEFIERRDGYPSDPE-LIFLT-DGASKGVMQILNAV---------------IRGEKDG--VLVPVPQYPLY 168 (407)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChh-hEEEc-ccHHHHHHHHHHHH---------------cCCCCCE--EEEeCCCCccH
Confidence 3455666666666666574 344 89998 89999999888876 4 58886 99999999999
Q ss_pred HHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEE
Q 043646 195 LLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACF 268 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~viv 268 (625)
...++..|++++.++++. ++.+|+++|+++++.... ..+++++++++|+||||.+.+ +++|+++|++||+++|+
T Consensus 169 ~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 169 SATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred HHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 988999999999999875 357999999999973211 126899999999999999977 46678889999999999
Q ss_pred eccCcCCC-----ccccCC----CCC--C--CCCcEEEEcCCCCC-CCCC-CceEEEE---eccc
Q 043646 269 DFAASGPY-----VKINLR----SRN--I--DGYDAIFLATHKFL-GGPG-TPGILLI---SKAL 315 (625)
Q Consensus 269 D~A~~~g~-----~~id~~----~~~--~--~~~D~v~~S~hK~l-ggp~-g~G~l~v---~~~~ 315 (625)
|+++.--. ....+. .+. . ...-+++.|++|.| +.|+ .+|++++ ++++
T Consensus 249 DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~l 313 (407)
T PLN02368 249 DEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 313 (407)
T ss_pred EccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHH
Confidence 99965311 011111 010 0 01235567999998 4443 3899985 5555
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=144.02 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=160.3
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcch-hh---HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSY-VG---QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMG 161 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~-~~---~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~ 161 (625)
.+..+++..+++.++-.-+ +.+++- .| .-....+..+.+.+++++|.+ .+-+| +|+-.+=..++.+++
T Consensus 26 GGiLt~eArkal~E~gDGY----SvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D---~~R~t-~GARe~KfavMhal~ 97 (382)
T COG1103 26 GGILTEEARKALLEWGDGY----SVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMD---EVRVT-AGAREAKFAVMHALC 97 (382)
T ss_pred cCcCCHHHHHHHHHhcCCc----chhhhhccCccccccCCcHHHHHHHHHHHhCCc---eeeec-ccchhhHHHHHHHhc
Confidence 3566677777766543211 111111 01 112234556677799999996 56788 899998888888883
Q ss_pred ccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh--CCCCeEE
Q 043646 162 ITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA--AKRPMLG 237 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~--~~~~~lv 237 (625)
.+|| .|++....|++...+....|.+|..||-.. +..++++...+.|.+-.. +..+.+.
T Consensus 98 ---------------~~gd--~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~la 160 (382)
T COG1103 98 ---------------KEGD--WVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALA 160 (382)
T ss_pred ---------------cCCC--EEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEE
Confidence 6777 488899999999888999999999999653 568999999888875332 2358899
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
.++|+....|.+.|.+.++++|+++|+++++.+|+.+|-.+++.++. ++||++.|+||.+..-+.+|+|-++.+.
T Consensus 161 llTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~---g~DFiVgSGHKsmAAs~PiGvl~~~eE~ 235 (382)
T COG1103 161 LLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEI---GADFIVGSGHKSMAASAPIGVLAMSEEW 235 (382)
T ss_pred EEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccccccc---CCCEEEecCccchhccCCeeEEeehhHH
Confidence 99999999999999999999999999999999999999999999988 9999999999999877778999999887
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-15 Score=158.14 Aligned_cols=334 Identities=13% Similarity=0.129 Sum_probs=204.6
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..+. |-..+.|.+++.+.+.... .... ....+...++.+++++++|. + .++|+++|+.++
T Consensus 38 ~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~~~--~-~~~~~~SGs~A~ 107 (401)
T TIGR01885 38 RYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLT-LSSR------AFYNDVFGEFAEYVTKLFGY--D-KVLPMNTGAEAV 107 (401)
T ss_pred EEEEcccCHhhccCCCCCHHHHHHHHHHHHhcc-cccc------ccCCHHHHHHHHHHHhhcCC--C-EEEEeCccHHHH
Confidence 36676442 3347899999988875421 1111 01245667788999999874 2 678888899886
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc-hhHHHHHHcCC------------eEEEEecCCCCCCCHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH-SNLLSWRQSLA------------EVVEIGLDDNGLLDIE 219 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~-s~~~~~~~~G~------------~vv~v~~~~~~~ld~~ 219 (625)
...+-.++.... +. .++.+++. +|+.....|+ +....+...|- .+..++. .|++
T Consensus 108 e~ai~~a~~~~~----~~---~~~~~~~~-~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~ 174 (401)
T TIGR01885 108 ETAIKLARKWGY----KV---KGIPENQA-IIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-----NNLE 174 (401)
T ss_pred HHHHHHHHHHhh----hh---cCCCCCCC-EEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-----CCHH
Confidence 555544331100 00 00123333 5666665544 55555554321 2333332 2789
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc----ccCCCCCCCCCc
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK----INLRSRNIDGYD 290 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~----id~~~~~~~~~D 290 (625)
+|++++++. .++..+|+++.+.+++|.+.| +++|.++|++||+++++|+++. +|... .+...+ .+|
T Consensus 175 ~le~~l~~~--~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~---~~d 249 (401)
T TIGR01885 175 ALEEALEDH--GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENV---KPD 249 (401)
T ss_pred HHHHHHHhc--CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCC---CCC
Confidence 999988732 246788999999999999987 9999999999999999999964 22111 111122 578
Q ss_pred EEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHH
Q 043646 291 AIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369 (625)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~ 369 (625)
+++++ |.+++. ..+|+++.++++. +.+.+...+ . ...+.|.....+.++++.
T Consensus 250 i~~~g--K~l~~g~~~ig~v~~~~~i~--~~~~~~~~~-~----------------------t~~~~p~~~~aa~a~L~~ 302 (401)
T TIGR01885 250 IVLLG--KALSGGVYPVSAVLADDDVM--LTIKPGEHG-S----------------------TYGGNPLACAVAVAALEV 302 (401)
T ss_pred EEEee--ccccCCCCCcEEEEEcHHHH--hhccCCCCC-C----------------------CCCCCHHHHHHHHHHHHH
Confidence 88776 999754 2478888888773 333221100 0 012344444444555655
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhh
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFND 449 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 449 (625)
+. . +.+.++...+.+++.+.|.+++ ..++... ...+.++.+.+..+. .+....++++.|.+
T Consensus 303 i~--~---~~l~~~~~~~~~~~~~~L~~l~-~~~~~~~-~g~g~~~~i~~~~~~------------~~~~~~~l~~~l~~ 363 (401)
T TIGR01885 303 LE--E---EKLAENAEKLGEIFRDQLKKLP-KPIITEV-RGRGLLNAIVIDESK------------TGRTAWDLCLKLKE 363 (401)
T ss_pred HH--h---ccHHHHHHHHHHHHHHHHHhcc-CCceeEE-eecCeeEEEEeccCc------------chhHHHHHHHHHHh
Confidence 52 1 2455677888999999998773 1222111 123455555443211 01235678888864
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+||.+.++ .++.+||++++.+|++|+++++++|++++
T Consensus 364 -~Gv~v~~~---------------------------------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 364 -KGLLAKPT---------------------------------HGNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred -CCEEEEec---------------------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 69998632 13789999999999999999999998765
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-16 Score=166.96 Aligned_cols=257 Identities=14% Similarity=0.103 Sum_probs=161.8
Q ss_pred cCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC--
Q 043646 176 LRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD-- 251 (625)
Q Consensus 176 l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~-- 251 (625)
+.|||+ |+++.+.|+.+...++..|++++.+++ +. +..+|++.+++.+.+. .++++++++++++||||.+.+
T Consensus 139 ~~pGd~--Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~P~NPTG~v~s~e 214 (423)
T PLN02397 139 FYPGST--IYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA--PDGSFVLLHACAHNPTGVDPTPE 214 (423)
T ss_pred hCCCCE--EEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHH
Confidence 358885 999999999999889999999999997 33 4679999998888632 246889999999999999977
Q ss_pred -HHHHHHHHHHcCCEEEEeccCcCCCc-c-----ccCCCCCCCCC-cEEEEcCCCCCCCCC-CceEEE--E-eccccccC
Q 043646 252 -TRSIARLLHQYGGFACFDFAASGPYV-K-----INLRSRNIDGY-DAIFLATHKFLGGPG-TPGILL--I-SKALYQLG 319 (625)
Q Consensus 252 -l~~I~~la~~~g~~vivD~A~~~g~~-~-----id~~~~~~~~~-D~v~~S~hK~lggp~-g~G~l~--v-~~~~~~l~ 319 (625)
+++|+++|++||+++++|+++..-.. . ..+......+. -+++.|++|.++.|+ .+|+++ + +++.. .
T Consensus 215 ~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~--~ 292 (423)
T PLN02397 215 QWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVA--V 292 (423)
T ss_pred HHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHH--H
Confidence 56678889999999999999542211 0 01111100111 255679999998443 389986 3 23221 0
Q ss_pred CCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh----c---CHHHHHHHHHHHHHHHH
Q 043646 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY----I---GYEVIKKQEDVYIESAL 392 (625)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~----~---g~~~i~~~~~~l~~~l~ 392 (625)
.+. ............+++...+. ++..++ .+. . ..+.++++.++.++.+.
T Consensus 293 ~~~--------------------~~~~~~~~~~~~~~~~~~q~--~~~~~L-~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 293 RVK--------------------SQLKLIARPMYSNPPIHGAS--IVATIL-GDPELFSEWTKELKGMADRIISMRQKLY 349 (423)
T ss_pred HHH--------------------HHHHHHHhcccCCCcHHHHH--HHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000001122222221 111111 110 0 13455667777888899
Q ss_pred HhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 393 GRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 393 ~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
+.|+++. ++.+..| +++.+.|.-. + .++++.|.+++||.+.+
T Consensus 350 ~~L~~~~~~~~~~~~~p----~gg~fl~~~l------------------~-~~~~~~Ll~~~~V~v~~------------ 394 (423)
T PLN02397 350 DALEARGSPGDWSHITK----QIGMFSFTGL------------------N-KEQVDRMTKEYHIYMTR------------ 394 (423)
T ss_pred HHHHhcCCCCCCCcccC----CceEEEecCC------------------C-HHHHHHHHHhCCEEECC------------
Confidence 9998762 1444444 3444444322 1 35778888889999851
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ ||++.. .+.+.+++++++|++++++
T Consensus 395 -----------------------~~--Ri~~~~-~~~~~i~~~~~~i~~~~~~ 421 (423)
T PLN02397 395 -----------------------DG--RISMAG-LSSKNVPYLADAIHAVVTN 421 (423)
T ss_pred -----------------------CC--eEEEee-CCHHHHHHHHHHHHHHHhc
Confidence 24 999842 6889999999999998753
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-15 Score=160.88 Aligned_cols=346 Identities=15% Similarity=0.140 Sum_probs=199.2
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..| .-|+|..+ .|...+.|.+++.+++........ ....+...++.+.++++++. +
T Consensus 66 G~~l~d~dG---~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~-------~~~~~~~~~la~~L~~~~~~--~ 133 (474)
T PLN02624 66 GSRIWDPEG---KKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR-------AFYNDKFPEFAEYLTSMFGY--D 133 (474)
T ss_pred eCEEEECCC---CEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccc-------ccCCHHHHHHHHHHHhhcCC--C
Confidence 344555444 34788643 345588999999998865321111 01134556688888888864 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcC-CCCchhHHHHHHcCC------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGP-YEHHSNLLSWRQSLA------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~~~~G~------------~vv 206 (625)
.++|+.+|+.++...+-.++..... + .+. ++++..|+... ..|.....++...+- .+.
T Consensus 134 -~~~f~~SGseA~e~AlklAr~~~~~---~----~g~-~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~ 204 (474)
T PLN02624 134 -MVLPMNTGAEGVETAIKLARKWGYE---K----KGI-PKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHL 204 (474)
T ss_pred -eEEEeCChHHHHHHHHHHHHHHHHh---h----cCC-CCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCce
Confidence 6888888988744443222210000 0 001 11222344444 444443333332211 122
Q ss_pred EEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCc----
Q 043646 207 EIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYV---- 277 (625)
Q Consensus 207 ~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~---- 277 (625)
.++. -|++.|++.++. ..+++.+|+++.++|++|.+.| +++|.++|++||+++|+|++|. +|..
T Consensus 205 ~~~~-----~d~~~l~~~l~~--~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~ 277 (474)
T PLN02624 205 KVDF-----GDLDALEKIFEE--DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML 277 (474)
T ss_pred EeCC-----CCHHHHHHHHHh--CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh
Confidence 3332 278999998873 2346889999999999999988 9999999999999999999987 2221
Q ss_pred cccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 278 KINLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
..+.... .+|+++++ |.+|+. ..+|++++++++ +..+.+... +.+ ..+.
T Consensus 278 a~~~~~i---~pDiv~ls--K~lggG~~pigav~~~~~i--~~~~~~~~~-~~T----------------------~~g~ 327 (474)
T PLN02624 278 ACDWEEV---RPDVVILG--KALGGGVIPVSAVLADKDV--MLCIKPGEH-GST----------------------FGGN 327 (474)
T ss_pred hHHhcCC---CCCEEEec--ccccCCCCcceeeeecHHH--HhHhccCCc-CCC----------------------CCCC
Confidence 1121222 57888875 999765 357888888776 222222110 000 0233
Q ss_pred hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCc-EEEeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 357 PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 357 ~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
|.....+.++++.+ +. +.+.++...+.+++++.|.+ ++. +..+.+ ++.++.+.+..+.
T Consensus 328 pl~~aaa~aaLe~l--~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg----~G~~~~i~l~~~~-------- 390 (474)
T PLN02624 328 PLASAVAMAALQVV--QD---EKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRG----RGLLNAVVLNSPK-------- 390 (474)
T ss_pred HHHHHHHHHHHHHH--Hh---chHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe----eEEEEEEEecCCC--------
Confidence 33333334555544 21 23444555555666655544 332 221111 3344444442210
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
.......++++.|.+ .||.+.++ .++++||++++.+|++|+++
T Consensus 391 ---~~~~~a~~~~~~L~e-~GV~v~p~---------------------------------~~~~lR~~p~l~~t~e~id~ 433 (474)
T PLN02624 391 ---LGPVSAYDVCLKLKE-RGLLAKPT---------------------------------HDTIIRLAPPLSISEDELQE 433 (474)
T ss_pred ---cChHHHHHHHHHHHh-CCeEEecC---------------------------------CCCEEEEECCccCCHHHHHH
Confidence 000123567888755 79998643 13789999999999999999
Q ss_pred HHHHHHHHHHhh
Q 043646 512 ILAALEFIAAYG 523 (625)
Q Consensus 512 ll~aL~~~~~~~ 523 (625)
+++.|++++..-
T Consensus 434 ~l~~L~~~l~~~ 445 (474)
T PLN02624 434 CSKALSDVLEHD 445 (474)
T ss_pred HHHHHHHHHHHH
Confidence 999999887553
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-16 Score=159.10 Aligned_cols=343 Identities=16% Similarity=0.128 Sum_probs=228.8
Q ss_pred EeccCC-CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 79 TYADHT-ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~-~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
-||..+ +.+++.+.+++++..+-... +.++. -.++.+...++++.+|+++|.+.. ++|. -|-..+-..+
T Consensus 145 NYLGFa~~~g~ca~~~~~~~~kygl~~-css~~-----e~G~~~~hkelE~l~A~f~g~e~a--~vF~-mGf~TNs~~~- 214 (519)
T KOG1357|consen 145 NYLGFAQSVGPCAEASLKSFDKYGLSR-CSSRH-----EAGTTEEHKELEELVARFLGVEDA--IVFS-MGFATNSMNI- 214 (519)
T ss_pred ccccccccCCcCChHHHHHHHHhcccc-cccch-----hcccHHHHHHHHHHHHHhcCCcce--EEEe-ccccccccCc-
Confidence 355543 44677788888886644321 22221 123567888999999999999754 6775 3422211111
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh--CCCC-
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA--AKRP- 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~--~~~~- 234 (625)
-. .+.|+. .|+....+|.|....++..|+.++....+ |+.+||+.|.+... .++|
T Consensus 215 p~---------------l~~~gs--LIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Th 272 (519)
T KOG1357|consen 215 PS---------------LLGKGS--LIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTH 272 (519)
T ss_pred ce---------------eecCCc--ceeeccccchheeccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcC
Confidence 11 145676 58889999999999999999999999876 78888888875321 1222
Q ss_pred -----eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC---C---CCCCCCcEEEEcCCCCCCCC
Q 043646 235 -----MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR---S---RNIDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 235 -----~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~---~---~~~~~~D~v~~S~hK~lggp 303 (625)
.+|+.....++-|.+.++.++.++++++.+++++|+||+.|..+..-+ . .....+|++...+-|.||+.
T Consensus 273 rp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~ 352 (519)
T KOG1357|consen 273 RPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA 352 (519)
T ss_pred CcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc
Confidence 277778888899999999999999999999999999999887632111 1 12236789999999999855
Q ss_pred CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcC---HHHH
Q 043646 304 GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIG---YEVI 380 (625)
Q Consensus 304 ~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g---~~~i 380 (625)
+ |++..++.+.+ .++ ...+ ++.| ...-.|++++.+..++..+. ...| -++.
T Consensus 353 G--Gyiagsk~lid--~lr-t~s~--~~~y------------------at~~sppvaqq~~ssl~~i~-G~dgt~~g~~k 406 (519)
T KOG1357|consen 353 G--GYIAGSKELID--YLR-TPSP--SALY------------------ATSLSPPVAQQILTSVKHIM-GEDGTNRGRQK 406 (519)
T ss_pred c--ceecCcHHHHh--hhc-cCCC--ceee------------------cccCChHHHHHHHHHHHhhc-CCCcccHHHHH
Confidence 4 78888888843 221 1111 1001 01123566666555565553 2222 2355
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC
Q 043646 381 KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
.++...++.+++..|... ++.++++.+ .|++-..++.... -.++.+.|++ .+|.+..+.+
T Consensus 407 ~~~l~~ns~yfr~~l~~~-gfivyG~~d---SpVvplll~~~~k---------------~~~f~r~~l~-~nigvVvvgf 466 (519)
T KOG1357|consen 407 IERLAENSRYFRWELQKM-GFIVYGNND---SPVVPLLLYGPAK---------------IVAFSREMLE-RNIGVVVVGF 466 (519)
T ss_pred HHHHHhhhHHHHHhhhcC-cEEEecCCC---CCcceeeecCccc---------------ccHHHHHHHh-cCceEEEEeC
Confidence 667777888999999876 899998764 4555555544321 1256666655 5777776666
Q ss_pred CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 461 CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 461 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
++.|... +.+|+.....++.|+++++++.+..+-...+.
T Consensus 467 Patpl~e--------------------------~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~~~ 505 (519)
T KOG1357|consen 467 PATPLLE--------------------------SRARFCLSASHTKEDLDRALEVIDRVGDEDGV 505 (519)
T ss_pred CCchHHH--------------------------hHHHhhhcccccHHHHHHHHHHHhhhchhhcc
Confidence 5545322 56899999999999999999999987655443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.6e-15 Score=166.88 Aligned_cols=372 Identities=13% Similarity=0.096 Sum_probs=230.4
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHH
Q 043646 43 HHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTK 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~ 121 (625)
..+|...+..+.++.+++.---.. ....|++.+...- .|+.|.+.+.+.- .+|..-+.-....+++..+
T Consensus 40 l~lp~~~sE~e~~~~~~~la~~N~---------~~~~fig~G~y~~~~p~~i~r~v~~~p-~~~TaytPyQ~EisQG~Le 109 (939)
T TIGR00461 40 LQLEAPSKEYEALAHLKKIASKNH---------KFKSYIGMGYYGTILPPVIQRNLLENP-GWYTAYTPYQPEISQGRLE 109 (939)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC---------CccccCCCCcCCCcCChHHHHHHHhCc-hhhhcCCCCChhhhhHHHH
Confidence 445666566677777766542210 0113444443332 3444544554311 1121111111224667778
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH--
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-- 199 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-- 199 (625)
..-+.+..++++.|.+.. +.-+. .++|++..+++.+.. ...+.+..|+++...|+.....++
T Consensus 110 ~l~e~Qt~i~eLtGm~~a-NaSl~-d~atA~aEa~~~a~~--------------~~~~~~~~vlv~~~~hP~~~~v~~t~ 173 (939)
T TIGR00461 110 ALLNFQTVVSDLTGLPVA-NASLL-DEGTAAAEAMALSFN--------------VSKKKANKFFVAKDLHPQTKSVLHTR 173 (939)
T ss_pred HHHHHHHHHHHHHCCChh-hhhcc-chhhHHHHHHHHHHH--------------hhcCCCCEEEECCCCCcchHHHHHHH
Confidence 888999999999999866 33444 466665665555432 112222359999999999987776
Q ss_pred --HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 200 --QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 200 --~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
..|.+++.++ +++|++.+ ++..+++.. .|.+|.+.|+++|++++|++|++++++.-......
T Consensus 174 a~~~g~~v~~~~--------~~~l~~~~-------~~~~v~~q~-Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~l 237 (939)
T TIGR00461 174 AKPFGIEVIVVD--------CSDIKKAV-------DVFGCLLQY-PATDGSILDYKQLIDALHSHKSLVSVAADLMALTL 237 (939)
T ss_pred HHhcCcEEEEEc--------HHHHhhcC-------CEEEEEEEC-CCCCeEEecHHHHHHHHHHcCCEEEEEechHHhCC
Confidence 3588888874 34454433 355555554 47889999999999999999999999654333333
Q ss_pred cccCCCCCCCCCcEEEEcCCCCC-----CCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 278 KINLRSRNIDGYDAIFLATHKFL-----GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~l-----ggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
..+..++ |+|+++.+.++|. |||. .|++.+++++ .+.++....|. +.+...........+.+....|.
T Consensus 238 l~~Pge~---GaDi~vg~~q~fg~p~g~GGP~-aG~~a~~~~l--~r~lPgrivG~-s~D~~G~~~~~l~LqtReqhIrR 310 (939)
T TIGR00461 238 LTPPGHY---GADIVLGSSQRFGVPMGYGGPH-AAFFAVKDEY--NRKMPGRIVGV-SKDALGNTALRLALQTREQHIRR 310 (939)
T ss_pred cCCHHHc---CCcEEeeCCCccCCCCCCCCCc-eeeeeecHhh--HhhCCCCceeE-EecCCCCccceeecccccccccc
Confidence 3344444 8999977666654 4566 6999999988 45665555442 22211000001122233445677
Q ss_pred cCCChhHHHHH-----HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 353 NGGTPQIVQMI-----RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 353 ~~gt~~~~~~~-----~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
+.+|.|++..- .+++-.......|.++|.++++.++.++.+.|.+ .|+++..+. .-..+.+.. +.
T Consensus 311 ekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~---fF~~~~v~~-~~----- 380 (939)
T TIGR00461 311 DKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINKT---WFDTLTVKV-GN----- 380 (939)
T ss_pred cccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCC---ccceEEEEe-CC-----
Confidence 88888876531 2221112235677889999999999999999988 588887541 111222222 10
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
.+..++.+.|.+ .||.++.. ..+.++||+..++|++
T Consensus 381 ----------~~~~~i~~~~~~-~gi~l~~~---------------------------------~~~~i~~s~~E~~t~~ 416 (939)
T TIGR00461 381 ----------GISSELLKAAEE-FNINLRAV---------------------------------DTTTVGIALDETTTKA 416 (939)
T ss_pred ----------CCHHHHHHHHHH-CCCeeeec---------------------------------CCCEEEEEeecCCCHH
Confidence 125678888865 69998731 1367999999999999
Q ss_pred HHHHHHHHHH
Q 043646 508 EFEFILAALE 517 (625)
Q Consensus 508 did~ll~aL~ 517 (625)
||+.+++++.
T Consensus 417 di~~l~~~~~ 426 (939)
T TIGR00461 417 DVENLLKVFD 426 (939)
T ss_pred HHHHHHHHhc
Confidence 9999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-14 Score=161.99 Aligned_cols=174 Identities=18% Similarity=0.205 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
.....++++..|+.+|++.. ...+ ||||.++..++.+. +++||+ |+++...|-|+..++.
T Consensus 204 ~G~I~eAq~~aA~~fgA~~t--~Flv-NGST~gn~a~i~a~---------------~~~gd~--Vlv~RN~HKSv~~al~ 263 (755)
T PRK15029 204 TGAFGESEKYAARVFGADRS--WSVV-VGTSGSNRTIMQAC---------------MTDNDV--VVVDRNCHKSIEQGLI 263 (755)
T ss_pred CcHHHHHHHHHHHHhCCCcE--EEEe-CChhHHHHHHHHHh---------------cCCCCE--EEeecccHHHHHHHHH
Confidence 34678899999999999743 4454 89999888887776 578986 9999999999999999
Q ss_pred HcCCeEEEEecCC--C---CCCC-----HHHHHHHHHHhh-----hCCCCeEEEEecccCccccccCHHHHHHHHHHcCC
Q 043646 200 QSLAEVVEIGLDD--N---GLLD-----IEALRSQLELYK-----AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGG 264 (625)
Q Consensus 200 ~~G~~vv~v~~~~--~---~~ld-----~~~L~~~l~~~~-----~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~ 264 (625)
..|+.+++++... . +.++ ++.++++|+++. ..++++++++++| |..|++.++++|+++||++|+
T Consensus 264 L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~ 342 (755)
T PRK15029 264 LTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSD 342 (755)
T ss_pred HcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCC
Confidence 9999999996542 1 2455 899999997531 1134558888876 577999999999999999999
Q ss_pred EEEEeccCcCCC--cc-ccC-CCC-----CCCCCc-EEEEcCCCCCCCCCCceEEEEecc
Q 043646 265 FACFDFAASGPY--VK-INL-RSR-----NIDGYD-AIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 265 ~vivD~A~~~g~--~~-id~-~~~-----~~~~~D-~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
+++||+||+.-. .+ +.- ..+ ...|+| +++-|.||.+++....++|.++..
T Consensus 343 ~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 343 RLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred eEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 999999987521 11 110 111 113788 888899999988777778877543
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=153.73 Aligned_cols=334 Identities=13% Similarity=0.133 Sum_probs=189.6
Q ss_pred CCccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 65 NDVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 65 ~~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
.+..+.+..|+ -|+|..+. +. .+.|.+++.+.+.....++.. .....+..+++.+....
T Consensus 19 ~G~~l~d~dg~---~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~-----------~~~~~~~~la~~l~~~~ 83 (375)
T PRK04260 19 EGNYLIDTDGK---KYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNL-----------YLNSLQEEVAQKLIGDK 83 (375)
T ss_pred eeCEEEeCCCC---EEEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCc-----------cCCHHHHHHHHHHhcCc
Confidence 34555656553 37776443 55 567999999988654333221 12335556666554433
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEE---------EEe
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVV---------EIG 209 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv---------~v~ 209 (625)
+..++|+++|+.++...+..++. ...+++ +|.....+|.+...++...|.+.. .++
T Consensus 84 ~~~~~~~~SGseA~~~Al~~ar~--------------~~~~~~-vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (375)
T PRK04260 84 DYLAFFCNSGAEANEAAIKIARK--------------ATGKQE-IITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFS 148 (375)
T ss_pred CCEEEEcCccHHHHHHHHHHHHH--------------hcCCCe-EEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeE
Confidence 32467887787775555443331 122232 455556777776656544333211 011
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCcc--ccCC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVK--INLR 282 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~--id~~ 282 (625)
.. ...|++++++++. +++.+|+++.++|++|.+.+ +++|.++|+++|+++++|+++.. +... ....
T Consensus 149 ~~--~~~dl~~l~~~l~-----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~ 221 (375)
T PRK04260 149 YA--IFNDLNSVKALVN-----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFE 221 (375)
T ss_pred Ee--CCCCHHHHHHhcC-----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhH
Confidence 00 1248899998886 46889999999999999865 89999999999999999999752 2111 1100
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM 362 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 362 (625)
..+. .+|++ +++|.+++...+|++++++++ ...+..... .. ...+++....+
T Consensus 222 ~~~~-~pdi~--t~sK~l~~G~~ig~~~~~~~~--~~~~~~~~~-~~----------------------t~~~~~~~~~a 273 (375)
T PRK04260 222 HYGI-EPDIF--TLAKGLANGVPVGAMLAKSSL--GGAFGYGSH-GS----------------------TFGGNKLSMAA 273 (375)
T ss_pred hhCC-CCCEE--EecccccCCcceEEEEEcHHH--HhhcCCCCC-CC----------------------CCCcCHHHHHH
Confidence 1111 46765 567999743347999999887 222211100 00 00122332233
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 363 IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+.+.++....+ .-.+++++..+.+++.+.+.+.+.+.+..+.. . +.+....+.. +...
T Consensus 274 a~a~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~-g~~~~~~~~~----------------~~~~ 331 (375)
T PRK04260 274 ASATLDIMLTA-GFLEQALENGNYLQEQLQKALQDKETVTTVRG----L-GYMIGIETTA----------------DLSQ 331 (375)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHhhCCCeeEEec----c-ceEEEEEecC----------------cHHH
Confidence 33344333111 11234444444444445444444433322211 1 3333322221 2457
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+.+.|.+ +||.+.+. ..+.+|++++..++++|++++++.|+++
T Consensus 332 ~~~~l~~-~Gi~v~~~---------------------------------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 332 LVEAARD-KGLIVLTA---------------------------------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred HHHHHHh-CCCEEecC---------------------------------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 8888855 79998632 1367999999999999999999999875
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-14 Score=146.61 Aligned_cols=334 Identities=18% Similarity=0.191 Sum_probs=213.3
Q ss_pred CCCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~ 137 (625)
|.+..+++.-| .-|+|..+ .|..++.+.+++.++....+.-++. ...+...++.+.+.+..+ .
T Consensus 31 G~G~~v~D~~G---~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~-------~~~~~~~~la~~L~~~s~-~ 99 (404)
T COG4992 31 GEGAYVWDQQG---REYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNL-------FYNEPQAELAEKLVELSP-F 99 (404)
T ss_pred ccccEEECCCC---CEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccc-------cCChHHHHHHHHHHhhCc-c
Confidence 44566666655 34888543 4567899999999988655432222 123456677788888887 4
Q ss_pred CCCcEEEeCChHHH---HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH-HHHHc-------CC---
Q 043646 138 QADAIIFCGAGTTA---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL-SWRQS-------LA--- 203 (625)
Q Consensus 138 ~~~~vift~sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~-------G~--- 203 (625)
.+ .|+|++||+.| +|+.. +... -.++. ..||....++|.-.. ++... +.
T Consensus 100 ~d-~vff~NSGaEA~EaAiKlA-Rk~~--------------~~~~k-~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl 162 (404)
T COG4992 100 AD-RVFFCNSGAEANEAALKLA-RKYT--------------GDPEK-SKIIAFENSFHGRTLGALSATGQPKYRKGFGPL 162 (404)
T ss_pred cc-EEEEcCCcHHHHHHHHHHH-HHHc--------------CCCCC-cEEEEEcCCcCCccceeeeccCChhhccCCCCC
Confidence 44 89999888887 34332 2221 11222 246655555444322 21111 11
Q ss_pred --eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCC-
Q 043646 204 --EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPY- 276 (625)
Q Consensus 204 --~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~- 276 (625)
.++.+|.+ |+++++++|+ ++|.+|++..++-..|++.+ ++++.++|++||+++|+|++|..--
T Consensus 163 ~~g~~~vpfn-----Di~al~~ai~-----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GR 232 (404)
T COG4992 163 LPGFRHVPFN-----DIEALEAAID-----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGR 232 (404)
T ss_pred CCCceecCCC-----CHHHHHHHhc-----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCc
Confidence 34455554 8999999999 58999999999999999866 7889999999999999999987421
Q ss_pred -------ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 277 -------VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 277 -------~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
...++ .+|++++. |.+||...+|+++.++.. ...+.|-..| .|
T Consensus 233 TGk~fA~e~~gV------~PDI~tla--K~LgGG~PigA~la~~~~--~~~~~~G~Hg-ST------------------- 282 (404)
T COG4992 233 TGKLFAYEHYGV------EPDILTLA--KALGGGFPIGAMLATEEI--ASAFTPGDHG-ST------------------- 282 (404)
T ss_pred cchHHHHHHhCC------CCCEEEee--ccccCCccceeeEEchhh--hhcCCCCccc-CC-------------------
Confidence 11222 56988887 999877778999998554 2233332222 11
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-EEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-IQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
..|.|-.++...++++.+. .+.+.++.++..++++++|.++.. ..++... ..++-++...+.++
T Consensus 283 ---fGGNpLacAv~~a~l~~l~-----~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~v-RG~GLmiGiel~~~------ 347 (404)
T COG4992 283 ---FGGNPLACAVALAVLEVLL-----EEGLLENVREKGEYLLQRLRELKRRYPLVKEV-RGRGLMIGIELKEP------ 347 (404)
T ss_pred ---CCcCHHHHHHHHHHHHHHc-----chhHHHHHHHHHHHHHHHHHHHhhcCCceeee-ecceeEEEEEecCc------
Confidence 1344545555556666653 346667777778888888876411 1111111 11222333333221
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....++++.+.+ .|+.+-. + .+..+|+.+++-.+++|
T Consensus 348 ---------~~a~~~~~~~~~-~gvL~~~----a-----------------------------~~~ViR~~PpL~i~~ee 384 (404)
T COG4992 348 ---------YRARDIVRALRE-EGVLVLP----A-----------------------------GPNVIRFLPPLVITEEE 384 (404)
T ss_pred ---------ccHHHHHHHHHH-CCeEEec----C-----------------------------CCCeEEecCCccCCHHH
Confidence 124678888865 6988762 1 24789999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043646 509 FEFILAALEFIAAYG 523 (625)
Q Consensus 509 id~ll~aL~~~~~~~ 523 (625)
++..+++|+.++...
T Consensus 385 i~~~~~~l~~~l~~~ 399 (404)
T COG4992 385 IDEALDALERALAAA 399 (404)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=160.49 Aligned_cols=345 Identities=18% Similarity=0.169 Sum_probs=187.5
Q ss_pred cchHHHHHHHHHhhCCCCC--CCCCCcchhhH-HHHHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHhc
Q 043646 88 RSLRYIEDYIINNVLPFYG--NTHTSDSYVGQ-RMTKMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVMG 161 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~--n~~~~~~~~~~-~~~~~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l~ 161 (625)
...+.|.+++...+...|. .|+.. ++.|. ...++..-++++++++||+++++ +|=.- ||+.+++..+ .++
T Consensus 31 ~~Sp~v~~al~S~l~nkyaeg~pg~r-yy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~-SGs~An~av~-~aL- 106 (399)
T PF00464_consen 31 YMSPAVREALGSDLTNKYAEGYPGKR-YYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPH-SGSQANLAVY-MAL- 106 (399)
T ss_dssp ---HHHHHHHTSGGGGS-TTEETTEE-SSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---S-SHHHHHHHHH-HHH-
T ss_pred ccCHHHHHHhCCcceeeccccCCCcc-cccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecC-CchHHHHHHH-HHH-
Confidence 4556777777666654443 33332 23333 34556667889999999998553 23333 7888765554 444
Q ss_pred ccccchhhhhhhhccCCCCceEEEEcCCCC---chhHHH--H-----HHcCCeEEEEecC-CCCCCCHHHHHHHHHHhhh
Q 043646 162 ITVPSIMRDKLITSLRDEERWVVFLGPYEH---HSNLLS--W-----RQSLAEVVEIGLD-DNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h---~s~~~~--~-----~~~G~~vv~v~~~-~~~~ld~~~L~~~l~~~~~ 230 (625)
++|||+ |+..+..| .+.-.. . .....+++.++++ +++.+|.+++++.+.+
T Consensus 107 --------------l~pGD~--Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~--- 167 (399)
T PF00464_consen 107 --------------LKPGDT--IMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKE--- 167 (399)
T ss_dssp --------------T-TT-E--EEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHH---
T ss_pred --------------HhhcCc--EEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhh---
Confidence 589997 66654443 322211 1 2234678889998 4789999999999986
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
.+|++|++...+. -...|++++.++|++.|+++++|.+|-.|.+.-.+-+-....+|++++|.||.|.||.| |+++
T Consensus 168 -~kPklIi~G~S~y--~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrg-giI~ 243 (399)
T PF00464_consen 168 -HKPKLIICGASSY--PRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRG-GIIL 243 (399)
T ss_dssp -H--SEEEEE-SST--SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS--EEEE
T ss_pred -cCCCEEEECchhc--cCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCc-eEEE
Confidence 4899998876543 34578999999999999999999999865443322221123689999999999999997 8888
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC---CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG---GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~---gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
.++........ + - ..+..+.+.+....-. |.|....+++.|+++........+...+++..+
T Consensus 244 ~~~~~~~~~~~-----~-~---------~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~N 308 (399)
T PF00464_consen 244 TNKGSKNVDKK-----G-K---------EIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKN 308 (399)
T ss_dssp ES-SEEEE-TT-----S-----------EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred EcCCccccCCc-----c-c---------ccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 88544111100 0 0 0011122222222222 334444444444444311122245667778888
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++.|.+.|.+. |++|++.- .....+...+.. .++++.++.+.| ++.||.+..-..+. ..
T Consensus 309 Ak~La~~L~~~-G~~v~~gg--Td~H~vlvd~~~--------------~~~~g~~a~~~L-e~~gI~vnkn~iP~---d~ 367 (399)
T PF00464_consen 309 AKALAEALQER-GFKVVTGG--TDNHQVLVDLRS--------------FGIDGKEAEKAL-EEAGIIVNKNTIPG---DR 367 (399)
T ss_dssp HHHHHHHHHHT-T-EEGGGS---SSSEEEEEGGG--------------GTS-HHHHHHHH-HHTTEE-EEE--TT---TS
T ss_pred HHHHHHHHhhC-CcEEEECC--CCCCeEEEEecc--------------cccchHHHHHHH-HhcCeeecccccCC---CC
Confidence 88999999876 99998632 122333333322 245677777777 66899986422211 11
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAAL 516 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL 516 (625)
....+..+||... .-..++|++.+.+.|
T Consensus 368 ---------------------~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 368 ---------------------SPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp ---------------------TTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred ---------------------CCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 0112467999975 334678888777654
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-14 Score=152.04 Aligned_cols=342 Identities=14% Similarity=0.107 Sum_probs=200.3
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+ .|...+.|.+++.+++.+.. ..... ...+...++.+++.+..+.
T Consensus 27 G~~~~d~dG---~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~-~~~~~------~~~~~~~~la~~l~~~~~~--- 93 (395)
T PRK03715 27 GSWLYDHNG---KRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLI-NPSPA------FYNEPMAKLAGLLTQHSCF--- 93 (395)
T ss_pred cCEEEECCC---CEEEECCcChhhccCCCCCHHHHHHHHHHHHhcc-ccccc------ccCHHHHHHHHHHhhccCC---
Confidence 344444445 34777643 45667899999998875432 11111 1123344555555554322
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEE---EEecCCC---
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVV---EIGLDDN--- 213 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv---~v~~~~~--- 213 (625)
+.++|+.||+.++...+-.++.... ..+++...+|......|.+...++...|.... ..|...+
T Consensus 94 ~~v~f~~SGseA~e~Aik~ar~~~~----------~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~ 163 (395)
T PRK03715 94 DKVFFANSGAEANEGAIKLARKWGR----------KHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPK 163 (395)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhh----------ccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCcee
Confidence 3789998888875444433321000 01233333566666788877766665553211 1111111
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCccc--cCCCCC
Q 043646 214 -GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVKI--NLRSRN 285 (625)
Q Consensus 214 -~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~i--d~~~~~ 285 (625)
...|++++++.+. +++.+|+++.+.+..|.+.| +++|.++|++||+++|+|+++.. |-... -....+
T Consensus 164 ~~~~d~~~l~~~l~-----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~g 238 (395)
T PRK03715 164 AELNDIASVEKLIT-----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSG 238 (395)
T ss_pred eCCchHHHHHHHcC-----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcC
Confidence 1247888998886 47899999999999999887 99999999999999999999872 11110 011111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA 365 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~a 365 (625)
. .+|+++++ |.+++...+|++++++++. ...+.. .++| + .|.|..++.+.+
T Consensus 239 v-~PDi~t~g--K~lg~G~p~~av~~~~~i~---~~~~~~-~~~T---------------------~-~g~pl~~aaala 289 (395)
T PRK03715 239 I-EPDIMTLG--KGIGGGVPLAALLAKAEVA---VFEAGD-QGGT---------------------Y-NGNPLMTAVGVA 289 (395)
T ss_pred C-CCceeeeh--hhhhCCcceEEEEEccccc---cccCCC-cCCC---------------------C-CCCHHHHHHHHH
Confidence 1 57987776 9997644468888888772 111110 0011 0 234444444455
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 366 ALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+++.+. .+.+.++.+++.+++.+.|+++ .++.-+ ...+.++.+.+..+. ...
T Consensus 290 ~L~~l~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~v----rG~Glm~~i~l~~~~----------------~~~ 344 (395)
T PRK03715 290 VISQLL-----APGFLEGVRARGEYLKEKLLELSEERGLEGE----RGEGLLRALLLGKDI----------------GPQ 344 (395)
T ss_pred HHHHHH-----hccHHHHHHHHHHHHHHHHHHHhhcCCcCeE----EcceeEEEEEecCch----------------HHH
Confidence 566552 1345667777777777777643 122211 123455555553210 223
Q ss_pred HHHHhhh--hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 443 VATLFND--LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 443 v~~~L~~--~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+.+.+.+ +.||.+... .+..+|+++++.+|++|++.++++|++++
T Consensus 345 ~~~~~~~~~~~Gi~~~~~---------------------------------~~~~lR~~p~l~~t~~ei~~~~~~l~~~l 391 (395)
T PRK03715 345 IVEKARDMQPDGLLLNAP---------------------------------RPNLLRFMPALNVTTEEIDQMIAMLRSVL 391 (395)
T ss_pred HHHHHHhccCCCEEEeec---------------------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 4444422 138887521 13679999999999999999999999987
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
.+
T Consensus 392 ~~ 393 (395)
T PRK03715 392 DK 393 (395)
T ss_pred Hh
Confidence 65
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=157.06 Aligned_cols=361 Identities=14% Similarity=0.099 Sum_probs=199.2
Q ss_pred CCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 65 NDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 65 ~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
.+..+.+..|+ -|+|..+ .|...+.|.+++.+++..... .... ....+...++.+.|++.+....
T Consensus 32 ~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~-----~~~~~~~~~la~~l~~~~p~~~ 102 (423)
T PRK05964 32 EGAYLYLADGR---ELIDAISSWWVATHGHNHPYIDQAIREQLDRLDH-VIFA-----GFTHEPAERLAQRLVALTPGGL 102 (423)
T ss_pred cccEEEeCCCC---EEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCC-cccc-----ccCCHHHHHHHHHHHHhCCCCC
Confidence 34555555553 4888643 356778999999988854211 1100 0123345567788888875333
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-HHcCC------------eE
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-RQSLA------------EV 205 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-~~~G~------------~v 205 (625)
+ .+.|+.+|+.+.-.++-.++.... . .-.++.+ .|+.-...|+.....+ ...+- .+
T Consensus 103 ~-~v~f~~sGseA~e~A~klar~~~~-----~----~~~~~r~-~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~ 171 (423)
T PRK05964 103 D-HVFFSDSGSVAVEVALKMALQYWR-----N----RGEPGRS-RFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQ 171 (423)
T ss_pred C-EEEEeCCcHHHHHHHHHHHHHHHH-----h----cCCCCCc-EEEEEcCCcCCccHHHHhcCCCccccccccCcCCCC
Confidence 3 799998888874433322221000 0 0012333 3555444444433332 21111 12
Q ss_pred EEEecCCC--CCCCHHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCc
Q 043646 206 VEIGLDDN--GLLDIEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYV 277 (625)
Q Consensus 206 v~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~ 277 (625)
..++...+ ...+++++++.+.+ ..+++.+|++.. +++..|.+.+ +++|.++|++||+++|+|+++. +|..
T Consensus 172 ~~~~~~~~d~~~~~~~~l~~~l~~--~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~ 249 (423)
T PRK05964 172 VTAPFPPDGYEQATLDALEALLEK--HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRT 249 (423)
T ss_pred EEeCCCcchhHHHHHHHHHHHHHh--CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 33333221 11227888888863 224677888877 5777888765 8999999999999999999975 3221
Q ss_pred c--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 278 K--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 278 ~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
. .-....+. .+|+++++ |+++++ ..+|+++.++++. +.+.+.. .++...+ ..-..
T Consensus 250 G~~~a~~~~~v-~pDi~~~~--K~l~gG~~p~~av~~~~~i~--~~~~~~~-~~~~~~~----------------~~T~~ 307 (423)
T PRK05964 250 GTLFACEQAGV-SPDIMCLS--KGLTGGYLPLAATLCTAEIF--EAFYSDD-RAKAFMH----------------SPSYT 307 (423)
T ss_pred cchhHHHhcCC-CCCeeeee--hhhhcCcccceEEEEcHHHH--HhhhcCC-ccccccc----------------CCCCC
Confidence 1 10011111 57887765 999766 3578888888873 2221100 0000000 00001
Q ss_pred CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 355 GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 355 gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
+.|..+..+.++++.+ +. +.+.++...+.+++.+.|+++.....+.+. ...+.++.+.+..+. .
T Consensus 308 ~np~~~aaa~a~l~~l--~~---~~~~~~~~~~g~~l~~~l~~l~~~~~i~~v-rg~Gl~~~i~l~~~~----------~ 371 (423)
T PRK05964 308 ANPLACAAANASLDLF--ED---EPVLERVAALSAGLAEGLEPFRDLPGVADV-RVLGAIGAVELDRPV----------L 371 (423)
T ss_pred cCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHhhccCCCeEEe-ecccEEEEEEeccCc----------c
Confidence 2222233334445544 21 235567777777787777654222111111 113445555553211 0
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
.-....+.+.|.+ +||.+.+. .+.+|+++++++|++|||++++
T Consensus 372 --~~~~~~l~~~l~~-~Gv~v~~~----------------------------------~~~lR~~p~l~~t~edId~~v~ 414 (423)
T PRK05964 372 --ERDGPALRAFALE-RGVLLRPL----------------------------------GNTIYLMPPYIITAEELDRITD 414 (423)
T ss_pred --hhHHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEeCCcccCHHHHHHHHH
Confidence 0013467777755 79998631 1569999999999999999999
Q ss_pred HHHHHHHh
Q 043646 515 ALEFIAAY 522 (625)
Q Consensus 515 aL~~~~~~ 522 (625)
++++++.+
T Consensus 415 ~l~~al~~ 422 (423)
T PRK05964 415 AIVEVADE 422 (423)
T ss_pred HHHHHHhh
Confidence 99998865
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-14 Score=152.38 Aligned_cols=343 Identities=11% Similarity=0.087 Sum_probs=194.5
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| ..|+|..+ .|...+.|.+++.+.+......... . ..+...++.+.++++.+. +
T Consensus 31 G~~~~d~dG---~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~----~---~~~~~~~l~~~l~~~~~~--~ 98 (403)
T PRK05093 31 GSRVWDQQG---KEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNV----F---TNEPALRLAKKLIDATFA--E 98 (403)
T ss_pred cCEEEeCCC---CEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCc----c---CCHHHHHHHHHHHhhCCC--C
Confidence 344444444 34777643 5667889999999888543211110 0 123345788888888754 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~ 207 (625)
.++|+.||+.++...+-.++.... + ....+...+|.+....|.+...++...| ..++.
T Consensus 99 -~~~~~~sGseA~e~a~klar~~~~----~-----~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (403)
T PRK05093 99 -RVFFANSGAEANEAAFKLARRYAC----D-----RHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITH 168 (403)
T ss_pred -EEEEeCchHHHHHHHHHHHHHHHh----h-----cCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEE
Confidence 688887899885555433321100 0 0012333355566667776654433211 12333
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccccC-
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKINL- 281 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~id~- 281 (625)
++.+ |++++++.+. +++++|+++.+++..|.+.+ +++|.++|++||+++|+|++++ .+...-..
T Consensus 169 ~~~~-----d~~~l~~~l~-----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~ 238 (403)
T PRK05093 169 VPFN-----DLAAVKAVID-----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFA 238 (403)
T ss_pred eCCC-----CHHHHHHHhc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchh
Confidence 3322 7899998886 57899999954444444434 8999999999999999999977 22211100
Q ss_pred -CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC-ChhH
Q 043646 282 -RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG-TPQI 359 (625)
Q Consensus 282 -~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g-t~~~ 359 (625)
...+. .+|+++ +.|.+++...+|++++++++. +.+.+...+ ...+ .|..
T Consensus 239 ~~~~~~-~pdi~s--~sK~l~~G~rig~vv~~~~i~--~~l~~~~~~------------------------~t~~~~~~~ 289 (403)
T PRK05093 239 YMHYGV-TPDILT--SAKALGGGFPIGAMLTTAEIA--SHFKVGTHG------------------------STYGGNPLA 289 (403)
T ss_pred hhhcCC-CCCEEE--ecccccCCcceEEEEEcHHHH--hhcCCCCCC------------------------CCCCCCHHH
Confidence 01111 467654 569997333489999998872 333221100 1122 2333
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
...+.++++++ .. +.+.++.+.+.+++.+.|.++. ...+... ....+.+.+...+.. ..-
T Consensus 290 ~~aa~a~L~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~G~~~~~~l~~~------------~~~ 350 (403)
T PRK05093 290 CAVAEAVFDII--NT---PEVLEGVKARRQRFVDGLQKINQKYGVFSE--IRGMGLLIGAELKPQ------------YKG 350 (403)
T ss_pred HHHHHHHHHHH--hh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeEe--EeeCceEEEEEecCc------------chh
Confidence 33334555554 21 2344566667777777776541 1111111 001133333322211 000
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
...+++..|.+ .||.+.++ ..+++|+++++.+++++++.++++|++
T Consensus 351 ~~~~~~~~l~~-~Gv~v~~~---------------------------------g~~~lRl~~~~~~~~~~i~~~~~~l~~ 396 (403)
T PRK05093 351 RARDFLNAAAE-EGVMVLVA---------------------------------GPDVLRFAPSLVIEEADIDEGLARFEK 396 (403)
T ss_pred HHHHHHHHHHH-CCeEEecC---------------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 24567777765 69988732 137899999998999999999999999
Q ss_pred HHHh
Q 043646 519 IAAY 522 (625)
Q Consensus 519 ~~~~ 522 (625)
++..
T Consensus 397 ~l~~ 400 (403)
T PRK05093 397 AVAK 400 (403)
T ss_pred HHHH
Confidence 8764
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-14 Score=143.12 Aligned_cols=321 Identities=14% Similarity=0.089 Sum_probs=212.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
-+...++..++..+++.+++.+++. ...++ +||.+.+..--..+ .+..+. .+-+++.++++...|.+.
T Consensus 115 fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~-G~Ses~l~~~k~~~---------~~r~~~-k~I~~p~iv~~~~v~~a~ 183 (491)
T KOG1383|consen 115 FPVVRKLEAECVNMIANLFNAPSDSCGCGTV-GGSESGLAAKKSYR---------NRRKAQ-KGIDKPNIVTPQNVHAAF 183 (491)
T ss_pred cchhHHHHHHHHHHHHHHhcCCccccCcccc-ccchHHHHHHHHHH---------HHHHhc-cCCCCccccchHHHHHHH
Confidence 3456788899999999999998653 22343 34444232222211 221111 234556799998888888
Q ss_pred HHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEEEeccC
Q 043646 195 LLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAA 272 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vivD~A~ 272 (625)
.+..+..+.+++.||+++ +..+|+..+.+.+. .+|.+++.+.++.|+|.+.|+++|.+++-+ +++.+++|++.
T Consensus 184 eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~-----eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~ 258 (491)
T KOG1383|consen 184 EKAARYFEVELREVPLDEGDYRVDPGKVVRMID-----ENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACL 258 (491)
T ss_pred HHHHhhEEEEEEeeeccccceEecHHHHHHHhc-----cceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccC
Confidence 888888899999999995 67999999999998 589999999999999999999999999999 99999999997
Q ss_pred cCCCc--------cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC--CCCcccCCceEEeecccccccc
Q 043646 273 SGPYV--------KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS--SPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 273 ~~g~~--------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~--~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
+.-.. ++|++.- ++-.+..+.||+-..|.|+|+++-+.+-..... ...-+.||-....
T Consensus 259 GgFi~p~~~~~~~~fdFr~p---~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~--------- 326 (491)
T KOG1383|consen 259 GGFINPAGYLNEEEFDFRVP---GVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASP--------- 326 (491)
T ss_pred ccccccccccCccccccCCC---CceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCc---------
Confidence 65444 2344332 677889999999888999998877665421111 1222333322100
Q ss_pred ccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccC
Q 043646 343 LYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~ 422 (625)
.-...+.| ..++.+=..++.....|+.+..+++.+.+.++++.+++++++.++++ |.++|.....
T Consensus 327 -----TlngSR~g----~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gk------p~vs~~~~~s 391 (491)
T KOG1383|consen 327 -----TLNGSRPG----SQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGK------PLVSFILFGS 391 (491)
T ss_pred -----ccccCCcc----cHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCC------CcEEEEEccC
Confidence 01111122 12221112222225567778888888999999999999999999987 5677777653
Q ss_pred CCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC
Q 043646 423 TNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~ 502 (625)
. .++-.++...|. ++|-.+.+=.. |..+-+++..
T Consensus 392 ~-------------~~~i~elsd~l~-~~GW~lnalq~--------------------------------P~a~Hi~vt~ 425 (491)
T KOG1383|consen 392 N-------------DVNIFELSDLLR-KKGWILNALQF--------------------------------PAAIHICVTR 425 (491)
T ss_pred C-------------ccchhhhhHHHH-hcCcCccccCC--------------------------------CCceEEEEEe
Confidence 2 234457788774 46766642221 1223333322
Q ss_pred CCCHHH-HHHHHHHHHHHHHhhhh
Q 043646 503 YMSNEE-FEFILAALEFIAAYGHR 525 (625)
Q Consensus 503 ~~t~ed-id~ll~aL~~~~~~~~~ 525 (625)
.+..++ .|+|+.-|++++++...
T Consensus 426 ~~~~~~~A~~~v~Di~~~~~el~~ 449 (491)
T KOG1383|consen 426 VHAREDVADRFVADIRKVVEELKS 449 (491)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHh
Confidence 222233 68888888888887643
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=149.56 Aligned_cols=312 Identities=18% Similarity=0.184 Sum_probs=189.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++........+++.++++-|+.. .+.|. ||..| |..+...+ +++||. |+++..-|...
T Consensus 57 Y~R~~nPT~~~lE~~~a~LEg~~~--~~afs-SGmaA-I~~~~l~l---------------l~~GD~--vl~~~~~YG~t 115 (396)
T COG0626 57 YSRTGNPTRDALEEALAELEGGED--AFAFS-SGMAA-ISTALLAL---------------LKAGDH--VLLPDDLYGGT 115 (396)
T ss_pred cccCCCccHHHHHHHHHHhhCCCc--EEEec-CcHHH-HHHHHHHh---------------cCCCCE--EEecCCccchH
Confidence 333334455668888888888753 35664 66555 66655555 678985 77777766665
Q ss_pred HHH----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLS----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
..- ++..|+++.+++.. +.+++++++.+ ++|++|.+..|+||+-.+.|+.+|+++||++|++++||.
T Consensus 116 ~~~~~~~l~~~gi~~~~~d~~-----~~~~~~~~~~~----~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDN 186 (396)
T COG0626 116 YRLFEKILQKFGVEVTFVDPG-----DDEALEAAIKE----PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDN 186 (396)
T ss_pred HHHHHHHHHhcCeEEEEECCC-----ChHHHHHHhcc----cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEEC
Confidence 433 34568898888754 45566766662 489999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+.+.|+..-.+.- |+|+++.|..|+++|-.- .|+++.+++... ..+..
T Consensus 187 TfatP~~q~PL~~----GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~-~~~~~------------------------- 236 (396)
T COG0626 187 TFATPVLQRPLEL----GADIVVHSATKYLGGHSDVLGGVVLTPNEELY-ELLFF------------------------- 236 (396)
T ss_pred CcccccccChhhc----CCCEEEEeccccccCCcceeeeEEecChHHHH-HHHHH-------------------------
Confidence 9887764333321 899999999999987653 354444554411 00000
Q ss_pred hhhhcCCC-hhHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 349 EERENGGT-PQIVQMIRAALAFWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 349 ~~~~~~gt-~~~~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
..+...|+ ++.... |++ ....-...+.++..+++..+.++|.+.|.++ |+.|.- ...+
T Consensus 237 ~~~~~~G~~l~p~dA------~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~g 310 (396)
T COG0626 237 AQRANTGAVLSPFDA------WLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYG 310 (396)
T ss_pred HHHhhcCCCCCHHHH------HHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCc
Confidence 01111222 111111 111 0111123334455556888899998888875 665530 1367
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
+.++|.+..+. ....+.+.| +.+.+...-|..-+- |....+-.+..+...+ .
T Consensus 311 g~~Sf~l~~~~---------------~~~~f~~~L-~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~---------~ 365 (396)
T COG0626 311 GLFSFELKNEE---------------AAKKFLDSL-KLFKLAESLGGVESLISHPATMTHASIPLEERAK---------A 365 (396)
T ss_pred eEEEEEeCChH---------------HHHHHHHhC-CccEEeccCCCcccccccccccCcccCCHhHHHh---------c
Confidence 89999986520 133455555 444444444443221 2111111222222111 4
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
|+.++.||+|+|. ||++.|++-|++.++
T Consensus 366 Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~ 393 (396)
T COG0626 366 GITDGLVRLSVGL----EDVEDLIADLEQALA 393 (396)
T ss_pred CCCCCeEEEEecC----CCHHHHHHHHHHHHH
Confidence 6778999999996 556666666655543
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-14 Score=151.21 Aligned_cols=344 Identities=13% Similarity=0.089 Sum_probs=197.4
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| ..|+|..+ .|...+.|.+++.+++...... ... + ..+...++.++++++++. +
T Consensus 30 G~~~~d~dG---~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~-~-----~~~~~~~la~~l~~~~~~--~ 97 (406)
T PRK12381 30 GSRLWDQQG---KEYIDFAGGIAVNALGHAHPALREALNEQASKFWHT-GNG-Y-----TNEPVLRLAKKLIDATFA--D 97 (406)
T ss_pred cCEEEeCCC---CEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccc-cCc-c-----CCHHHHHHHHHHHhhCCC--C
Confidence 445555544 34788644 5666889999999988643211 111 1 123456788888888754 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe------------EEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE------------VVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~ 207 (625)
.++|+.+|++++...+-.++.... + ...++...+|......|.....++...+.. +..
T Consensus 98 -~v~~~~sGseA~e~Alk~ar~~~~-----~----~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (406)
T PRK12381 98 -RVFFCNSGAEANEAALKLARKYAH-----D----RYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRH 167 (406)
T ss_pred -eEEEcCCcHHHHHHHHHHHHHHHh-----h----cCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeE
Confidence 789998888885544433331000 0 011222224555566666665444443321 222
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-----cCHHHHHHHHHHcCCEEEEeccCc-CCCccc--
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-----SDTRSIARLLHQYGGFACFDFAAS-GPYVKI-- 279 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-----~~l~~I~~la~~~g~~vivD~A~~-~g~~~i-- 279 (625)
++ ..|+++|++.+. +++++|+++ |.+++|-+ ..+++|.++|++||+++|+|+++. +|....
T Consensus 168 ~~-----~~d~~~l~~~l~-----~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~ 236 (406)
T PRK12381 168 AA-----YNDLNSASALID-----DQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY 236 (406)
T ss_pred eC-----CCCHHHHHHhcc-----CCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh
Confidence 22 237899998886 578888887 55666543 337899999999999999999974 322211
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
.....+. .+|++ ++.|.+++...+|++++++++. +.+.+...+ .+ ..+.|..
T Consensus 237 ~~~~~~v-~pDi~--t~sK~l~gG~~ig~~~~~~~~~--~~~~~~~~~-~t----------------------~~~~pl~ 288 (406)
T PRK12381 237 AYMHYGV-TPDVL--TTAKALGGGFPIGAMLTTEKCA--SVMTVGTHG-TT----------------------YGGNPLA 288 (406)
T ss_pred hhHhhCC-CCCEE--EehhhhhCCCceEEEEEcHHHH--hhcCCCCCC-CC----------------------CCCCHHH
Confidence 1011111 46765 4559997444489999988873 333221100 00 1233333
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
...+.++++++ + .+.+.++.+++.+++.+.|.++. ...++... ...+.++.+...++. .-
T Consensus 289 ~aaa~a~l~~l--~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~v-rg~Gl~~~~~l~~~~-------------~~ 349 (406)
T PRK12381 289 SAVAGKVLELI--N---TPEMLNGVKQRHDWFVERLNTINARYGLFSEI-RGLGLLIGCVLNAEY-------------AG 349 (406)
T ss_pred HHHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEE-ecCeEEEEEEecCch-------------hh
Confidence 33344555554 2 22466777777888888776641 11111110 012233333322110 00
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
....+.+.|.+ +||.+.+. .++.+|+++++.+|++|+++++++|++
T Consensus 350 ~~~~~~~~l~~-~Gv~v~~~---------------------------------g~~~lRl~p~~~~t~~~i~~~~~~l~~ 395 (406)
T PRK12381 350 KAKQISQEAAK-AGVMVLIA---------------------------------GPNVVRFAPALNISEEEITTGLDRFAR 395 (406)
T ss_pred HHHHHHHHHHH-CCcEEeeC---------------------------------CCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 13467777754 79998631 136899999999999999999999999
Q ss_pred HHHhh
Q 043646 519 IAAYG 523 (625)
Q Consensus 519 ~~~~~ 523 (625)
++.+.
T Consensus 396 ~l~~~ 400 (406)
T PRK12381 396 ACERF 400 (406)
T ss_pred HHHHH
Confidence 88654
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-14 Score=144.03 Aligned_cols=340 Identities=14% Similarity=0.159 Sum_probs=219.5
Q ss_pred CcchHHHHHHHHHhhCCCCCC--CCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGN--THTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n--~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
...|+.|++.+.+.+..+.+- .-.+.++.+........++++.++++++.+.+..|+|+.+|.++....+...+
T Consensus 14 a~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nL---- 89 (365)
T COG1932 14 AALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNL---- 89 (365)
T ss_pred ccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhh----
Confidence 345788888888887665431 11123456677888999999999999999998899999889998777776655
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC--eEEEEecCC---CCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA--EVVEIGLDD---NGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~--~vv~v~~~~---~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
+......-|.....+..+.. -.+..+. .+..+.... ....+++... +. ++...|.+
T Consensus 90 -----------l~~~~~~yv~~g~Ws~~a~~-eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~-----~~~ayv~~ 150 (365)
T COG1932 90 -----------LGKRGTDYVDTGAWSEFAIK-EAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FS-----DNDAYVHF 150 (365)
T ss_pred -----------hcccCceeEeeeehhHhHHH-HHHHhcccccccccceeccCccCCCChhhcc--cC-----CCccEEEE
Confidence 22222101333333333322 1222332 222222111 1234444322 22 23556999
Q ss_pred ecccCccccccCH-HHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 240 SACSNVTGIYSDT-RSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 240 ~~~~n~TG~~~~l-~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
|+..+.+|+-.|- ..+.. +.++++|..+.+...++|+. .+|++.++.+|.+| |.|++++++++++ +
T Consensus 151 ~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iDvs-----k~dviyagaQKnlG-paGltvvIvr~~~--l 217 (365)
T COG1932 151 CWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPIDVS-----KYDVIYAGAQKNLG-PAGLTVVIVRPDL--L 217 (365)
T ss_pred ecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCChh-----HcceEEEehhhccC-ccceEEEEEcHHH--H
Confidence 9999999998662 22211 28999999999999999997 56999999999998 8889999999999 4
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHH--HHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAA--LAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aa--l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
.+..+..+ .....|...........||++..+.... +.| +++..|.+.+.+|.+..++.+++.+.
T Consensus 218 ~r~~~~~~------------P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~W-lk~~GGl~~~~~rn~~ka~~LY~~id 284 (365)
T COG1932 218 ERAESYTL------------PSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKW-LKSQGGLEALEARNQAKAQLLYDWID 284 (365)
T ss_pred hcccccCC------------chHhhchhhhccCCccCCcHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44433210 0011222223344456789988876444 444 45778999999999999999999998
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
+.+-..-......+..-+++|.+.... ++.. +++.+.+ .|+..-.|. .
T Consensus 285 ~s~fy~~~v~~~~RS~mnV~f~~~~~~--------------ld~~-fv~eae~-~gl~~lkGh--------r-------- 332 (365)
T COG1932 285 KSDFYRNLVAKANRSRMNVTFTLVDAE--------------LDKG-FVAEAEA-AGLIYLKGH--------R-------- 332 (365)
T ss_pred hCCccccccchhhccceeEEEEcCcHH--------------HHHH-HHHHHHH-cCCceeccc--------c--------
Confidence 864443332222344556777765421 3333 4444433 466554442 1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..|.+|+|+...+..++++.|++.|+++.+.
T Consensus 333 ---------------~vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 333 ---------------SVGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred ---------------CCCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 1355999999999999999999999987654
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=150.58 Aligned_cols=345 Identities=15% Similarity=0.133 Sum_probs=205.3
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+++..|+ -|+|..+ .|..++.|.+++.+++......+. + ...+...++.++|++++....+
T Consensus 74 ~~l~D~dG~---~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~---~----~~~~~~~~lae~L~~~~p~~~~- 142 (459)
T PRK11522 74 NTLVDTQGQ---EFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQ---E----LLDPLRAMLAKTLAALTPGKLK- 142 (459)
T ss_pred EEEEECCCC---EEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccc---c----cCCHHHHHHHHHHHHhCCCCCC-
Confidence 455555553 4888533 456678999999998864311111 1 1234455677778777654333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcC-CCCchhHHHHHHcCCe------------EEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGP-YEHHSNLLSWRQSLAE------------VVE 207 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~~~~G~~------------vv~ 207 (625)
.+.|+.+|+.+.-.++-.++... -+.|. ..|+... .+|......+...|-. +..
T Consensus 143 ~v~f~~SGsEAve~AlklAr~~t------------~~~gr-~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK11522 143 YSFFCNSGTESVEAALKLAKAYQ------------SPRGK-FTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRH 209 (459)
T ss_pred EEEEeCCchHHHHHHHHHHHHHh------------ccCCC-cEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcc
Confidence 78999888887333332222100 01122 2355544 4555444333332211 112
Q ss_pred EecCCCCCCCHHHHHHHHHHhh-hCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--
Q 043646 208 IGLDDNGLLDIEALRSQLELYK-AAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI-- 279 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i-- 279 (625)
+|. -|.++++++++... ..+++.+|++..+....|.+.| ++++.++|++||+++|+|+++. +|-..-
T Consensus 210 ~~~-----~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~ 284 (459)
T PRK11522 210 VPF-----GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMF 284 (459)
T ss_pred cCC-----CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhh
Confidence 221 26788888886421 1245789999999999999988 8999999999999999999985 221110
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCC--CcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSP--PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~--p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
-....+. .+|+++++ |.+|+. ..+|++++++++.. ... +... +.| ..|.
T Consensus 285 a~e~~gv-~PDivt~g--K~lggG~~Pigav~~~~~i~~--~~~~~~~~~-~~T----------------------~~gn 336 (459)
T PRK11522 285 ACEHENV-QPDILCLA--KALGGGVMPIGATIATEEVFS--VLFDNPFLH-TTT----------------------FGGN 336 (459)
T ss_pred hhhccCC-CCCEEEec--hhhhCCCccceeEEEcHHHHH--HhccCCccc-CCC----------------------CCCC
Confidence 1111111 47988665 999763 23688888887732 211 1110 001 1234
Q ss_pred hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----Cc-E-EEeCCCCCCCcceEEEEeccCCCCCCccc
Q 043646 357 PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QN-I-QVLGNTSVKRQAILSFLVYSTTNSSPENM 430 (625)
Q Consensus 357 ~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~g-v-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~ 430 (625)
|..++.+.+.++.+ +. +.+.++.+.+.+++++.|+++ |. + .+-+ ++.++.+.+..+.
T Consensus 337 p~~~Aaala~L~~i--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG-----~Gl~~giel~~~~------- 399 (459)
T PRK11522 337 PLACAAALATINVL--LE---QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARG-----KGMLMAIEFVDNE------- 399 (459)
T ss_pred HHHHHHHHHHHHHH--hc---chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEe-----ceeEEEEEecCch-------
Confidence 44444445666665 22 245677788888888877654 21 1 2222 3455555553321
Q ss_pred cccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 431 KIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 431 ~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
....+.+.|.+ +||.+.+.. . ....+|+.++..+|++|++
T Consensus 400 --------~~~~i~~~l~~-~Gvl~~~~~-~------------------------------~~~~lr~~Ppl~~t~~~id 439 (459)
T PRK11522 400 --------IGYNFASEMFR-QRVLVAGTL-N------------------------------NAKTIRIEPPLTLTIEQCE 439 (459)
T ss_pred --------HHHHHHHHHHH-CCeEEEecC-C------------------------------CCCEEEEECCccCCHHHHH
Confidence 13467777765 799986321 0 1378999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 043646 511 FILAALEFIAAYGHR 525 (625)
Q Consensus 511 ~ll~aL~~~~~~~~~ 525 (625)
+++++|++++.+..+
T Consensus 440 ~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 440 QVLKAARKALAAMRV 454 (459)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877544
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-13 Score=151.83 Aligned_cols=314 Identities=15% Similarity=0.089 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
.....++++..|+.+|++.. ...+ +|||.++..++.++ +.+||. |++....|-|+..++.
T Consensus 194 ~G~i~eAe~~AA~~fgAd~t--yfvv-NGTS~~n~av~~a~---------------~~~Gd~--VLvdRN~HKSv~haLi 253 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADRS--YMVT-NGTSTANKIVGMYS---------------APAGST--VLIDRNCHKSLTHLMM 253 (714)
T ss_pred ChHHHHHHHHHHHHhCCCcE--EEEe-CchHHHHHHHHHHh---------------cCCCCE--EEeecccHHHHHHHHH
Confidence 34678899999999999744 4444 89999888887776 578995 9999999999999999
Q ss_pred HcCCeEEEEecCCC-----CCCC-----HHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEe
Q 043646 200 QSLAEVVEIGLDDN-----GLLD-----IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (625)
Q Consensus 200 ~~G~~vv~v~~~~~-----~~ld-----~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD 269 (625)
+.|+.+++++...+ +.++ .+.++++|.+.....+|+.++++++ |..|.+.+++.|.++||.++ ++||
T Consensus 254 lsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvD 330 (714)
T PRK15400 254 MSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFD 330 (714)
T ss_pred HcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEE
Confidence 99999999876532 2345 8999999986422234557888776 78899999999999999887 6999
Q ss_pred ccCcCCC--ccc--cCCCCCCCCC---c--EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccc
Q 043646 270 FAASGPY--VKI--NLRSRNIDGY---D--AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 270 ~A~~~g~--~~i--d~~~~~~~~~---D--~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
+||+.-. .+. +...+. .+. | +++-|.||.+++....++|.++..+ .
T Consensus 331 EAwgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~v-d----------------------- 385 (714)
T PRK15400 331 SAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV-N----------------------- 385 (714)
T ss_pred ccchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccchhHHhHHHHcCCC-C-----------------------
Confidence 9987421 121 111111 234 5 8889999999877665666553321 0
Q ss_pred ccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc------EEEeCCCCCCC-
Q 043646 341 DTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN------IQVLGNTSVKR- 411 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g------v~v~~~~~~~~- 411 (625)
+..+...-.-+...+|++.-++ -.+.+++. ...|. .+.+...+++..+++.|.++++ ++++.+.....
T Consensus 386 -~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~-~~~G~-~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~ 462 (714)
T PRK15400 386 -EETFNEAYMMHTTTSPHYGIVASTETAAAMMK-GNAGK-RLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTT 462 (714)
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-hhhhH-HHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccc
Confidence 0000000011222334433322 22333321 12343 4555666678888888887776 77765321000
Q ss_pred ------------------------cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 412 ------------------------QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 412 ------------------------~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
-|+=..+..++.+ ..+.-...++.+..+.+.| +++||.+--.
T Consensus 463 ~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~----~~g~~~~~Gipg~~v~~~L-~e~gI~~E~~--------- 528 (714)
T PRK15400 463 ECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMK----KDGTMSDFGIPASIVAKYL-DEHGIVVEKT--------- 528 (714)
T ss_pred hhcccCccccccCcccccccccccCCceEEEEeCCCC----CCccccccCCCHHHHHHHH-HHcCCEEEec---------
Confidence 0110001111100 0000112577788888888 5689987521
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+=+-++...|++++++|+++|.++-+.
T Consensus 529 ------------------------d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~~ 559 (714)
T PRK15400 529 ------------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (714)
T ss_pred ------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 1355666677778999999999999987544
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-13 Score=148.31 Aligned_cols=313 Identities=14% Similarity=0.092 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++..|+.+|++.. ..++ +|||.++..++.+. +.+||. |++....|-|+..++.+
T Consensus 195 G~i~eAe~~aA~~fgAd~t--yfvv-NGTS~~n~av~~a~---------------~~~Gd~--VLvdRN~HKSv~~aLil 254 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQS--YIVT-NGTSTSNKIVGMYA---------------APAGST--LLIDRNCHKSLAHLLMM 254 (713)
T ss_pred hHHHHHHHHHHHHhCCCcE--EEEe-CChHHHHHHHHHHh---------------cCCCCE--EEeecccHHHHHHHHHH
Confidence 4677899999999999744 4444 89999888887776 689996 99999999999999999
Q ss_pred cCCeEEEEecCC--C---CCCCH-----HHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEE-EEe
Q 043646 201 SLAEVVEIGLDD--N---GLLDI-----EALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFA-CFD 269 (625)
Q Consensus 201 ~G~~vv~v~~~~--~---~~ld~-----~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~v-ivD 269 (625)
.|+.+++++... . +.++. +.++++|.++....+|+.++++++ |..|++.++++|+++| |+.+ +||
T Consensus 255 sga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvD 330 (713)
T PRK15399 255 SDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFD 330 (713)
T ss_pred cCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEe
Confidence 999999987553 2 24555 889999986422245678888876 7889999999999999 6766 799
Q ss_pred ccCcCC--Cccc--cCCCCC-CCCCcEE---EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccc
Q 043646 270 FAASGP--YVKI--NLRSRN-IDGYDAI---FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 270 ~A~~~g--~~~i--d~~~~~-~~~~D~v---~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (625)
+||+.- ..+. +...+. ..++|.+ +-|.||.+++....++|.++..+ ..+.
T Consensus 331 EAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v-d~~~--------------------- 388 (713)
T PRK15399 331 SAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY-DEET--------------------- 388 (713)
T ss_pred ccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC-CHHH---------------------
Confidence 998742 1121 111111 1145766 88999999888777888775432 0000
Q ss_pred cccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc------EEEeCCCCCCC--
Q 043646 342 TLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN------IQVLGNTSVKR-- 411 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g------v~v~~~~~~~~-- 411 (625)
+...-.-+...+|++.-++ -.+.+++. ...|. .+.++..+++..+++.|.++.+ ++++.+.....
T Consensus 389 ---~n~a~~m~~STSPsY~LmASLD~a~~~m~-~~~G~-~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~ 463 (713)
T PRK15399 389 ---FNEAFMMHTSTSPSYPIVASVETAAAMLR-GNPGK-RLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAE 463 (713)
T ss_pred ---HHHHHHHHcCCCcHHHHHHHHHHHHHHHH-hhhhH-HHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCcc
Confidence 0000011222334433322 22222221 12343 4555666667788888877655 56665421000
Q ss_pred -----------------------cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 412 -----------------------QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 412 -----------------------~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
-|+=.....++.+ ..+.-...++.+..+.+.| +++||.+--.
T Consensus 464 ~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~----~~g~~~~~Gi~g~~l~~~L-~e~gI~~E~~---------- 528 (713)
T PRK15399 464 CWPVAPGEQWHGFKDADADHMFLDPVKVTILTPGMD----EQGNMSEEGIPAALVAKFL-DERGIVVEKT---------- 528 (713)
T ss_pred ceecCCCcccccccccccccccCCCceEEEEecCcc----cccccccCCCCHHHHHHHH-HHcCCEEEec----------
Confidence 0110001111100 0000123478888899988 5689998521
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+=+-++...|++++++|+++|.++-+.
T Consensus 529 -----------------------d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~~ 559 (713)
T PRK15399 529 -----------------------GPYNLLFLFSIGIDKTKAMGLLRGLTEFKRA 559 (713)
T ss_pred -----------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 1245666667778999999999999988543
|
|
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-16 Score=166.32 Aligned_cols=421 Identities=15% Similarity=0.073 Sum_probs=275.2
Q ss_pred eEeccCCCCCcchHHHHHHHHHhh-CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNV-LPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKR 155 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l-~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~ 155 (625)
..|+||+..+...+..++.+.... .....|||+. ...+..+.+.+.++|-++..+++....+ +++|+ . ++++++.
T Consensus 21 ~~yldhag~tl~sesq~~g~~~~sq~~e~~nphs~-~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp-~-~t~al~~ 97 (728)
T KOG2142|consen 21 LAYLDHAGRTLFSESQLEGVAFQSQSSENANPHSH-LGTSRSLARLVAQVRLRILALFNTTAFDYEVSLP-A-LTEALKL 97 (728)
T ss_pred HHHHHhhhhhhhhhcccchhhhhhhccccCCCccc-ccchHHHHHHHHHHHHHHHHHhccccccccchhH-H-HHHHHHH
Confidence 349999998888777766644333 3345788874 4566777889999999999999987655 89998 4 9999999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCc-eEEEEcCCCCchhHH-HHH--HcCCeEEEE-ecCC---CCCCCHHHHHHHHHH
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEER-WVVFLGPYEHHSNLL-SWR--QSLAEVVEI-GLDD---NGLLDIEALRSQLEL 227 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~-~~Vlv~~~~h~s~~~-~~~--~~G~~vv~v-~~~~---~~~ld~~~L~~~l~~ 227 (625)
+++++.+.. .+.+ ..+=...+.|.+... .++ ..|..+..+ .... ....++.+...-+
T Consensus 98 vae~fp~~s-------------~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~l-- 162 (728)
T KOG2142|consen 98 VAEAFPFYS-------------QTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEANL-- 162 (728)
T ss_pred HHHhCcccc-------------ccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccccccCc--
Confidence 999985322 2221 012233455555431 121 234433333 2111 1111111111111
Q ss_pred hhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCce
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPG 307 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G 307 (625)
....+....+.+|..|.....+.+-.+.-..+.++++|.|..+...+++.... .+|++.. ++|.||.|. |
T Consensus 163 ----s~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy---~f~~~~~-lltiFgyet--g 232 (728)
T KOG2142|consen 163 ----SEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESY---PFDFNPK-LLTIFGYET--G 232 (728)
T ss_pred ----ccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccccccchHhhC---CCcccch-heeecCCCc--h
Confidence 23568888889999998644444434443568899999999999999999887 8899999 999999998 5
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--cCHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY--IGYEVIKKQED 385 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~--~g~~~i~~~~~ 385 (625)
.+.+.++... . .||++.++...|.. .......+.+|++.|+.+...+++.-..|-..++ .++..+..+..
T Consensus 233 Avlv~~r~A~---~----~Ggkt~sa~f~wp~-~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~ 304 (728)
T KOG2142|consen 233 AVLVMNRSAE---L----KGGKTASAEFSWPM-LYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTL 304 (728)
T ss_pred hhHHHhhhhH---h----hcCccceeecccch-HHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHH
Confidence 5555555421 1 28888776655532 2233356789999999887766543222222233 36788888888
Q ss_pred HHHHHHHHhhCCC----CcEEEeCCC---CCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 386 VYIESALGRILPN----QNIQVLGNT---SVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 386 ~l~~~l~~~L~~l----~gv~v~~~~---~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
.+++++.-.|... |.+++++.. ++.+++++.|++..++ +.++...+|.+.. .+||+.++|
T Consensus 305 al~~~whvlLda~~lG~kdmd~yglS~f~Pdfqg~sf~fv~g~d~-----------psgfGcl~VkKs~--i~~l~lrtG 371 (728)
T KOG2142|consen 305 ALANNWHVLLDALALGPKDMDSYGLSLFQPDFQGPSFYFVFGRDD-----------PSGFGCLEVKKSA--ISGLELRTG 371 (728)
T ss_pred HHhhhHHHHHhhhccCcchHhhhhhhccCccceeeeEEEEeccCC-----------CCceeeeeeehhh--hhceeccCC
Confidence 8888888888654 334444322 2568899999987653 3445555666655 589999999
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHH--hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh-------------
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQ--KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG------------- 523 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~------------- 523 (625)
|+|+.+.++..+++..+++.+..++.. ..++|.+ ++ +++.+++|++.++.++..-.-+-
T Consensus 372 cfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~dg~~-----~s-~~~~~~~~~~a~~~~~v~~~~~T~~lm~~~~~se~e 445 (728)
T KOG2142|consen 372 CFCNIGACKIYPGLYLEMSQKGLSAGKGCGDNDGQP-----VS-GYMQTPADVGAYLSAQVSDVLETDPLMKSPVFSEQE 445 (728)
T ss_pred CCCCCcceeecccccHHHHHHHhhhccccccCCCCc-----cc-ccccchhhhhHHHHHhhhhhhhccccccccccchhh
Confidence 999999999999988777665333211 1235554 77 99999999999999886633111
Q ss_pred ---h-hccc--------------Ccccccc-----cccccccccchhhhhhhhcc
Q 043646 524 ---H-RFLP--------------LYHFNVK-----AGNWCSSQKAIKDLIDKETN 555 (625)
Q Consensus 524 ---~-~~~~--------------~y~~~~~-----~~~w~~~~~~~~~~~~~~~~ 555 (625)
. ...| .+.++++ --+|+-..++++|| |+||
T Consensus 446 ~~~n~~a~Pl~~~~~~~R~~d~~~~s~~~~~~~~EI~~~~~~~~gl~~~--~s~m 498 (728)
T KOG2142|consen 446 DSDNGIATPLLERVQLKRHFDAAVASYPIKCAAFEIEEENSGSQGLKYD--RSWM 498 (728)
T ss_pred hccccccCCcchhhcccchhhhhhhhhhhhhceeEeeccCccccccccc--cccc
Confidence 0 1112 3455666 22666679999999 9998
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-13 Score=148.95 Aligned_cols=356 Identities=14% Similarity=0.091 Sum_probs=201.2
Q ss_pred ccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..|+ -|+|..+. |..++.|.+++.+++......+.. ....+...++.++|++++....+
T Consensus 35 ~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~------~~~~~~~~~la~~L~~~~~~~~~- 104 (433)
T PRK08117 35 CYYYGVDGK---EYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSG------VIYYESILKLAEELAEITPGGLD- 104 (433)
T ss_pred eEEEeCCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCC-
Confidence 444444453 48886544 346789999999988543111110 11234567788888888843333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVE 207 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~ 207 (625)
.+.|+.||+.++...+-.++. . .|.+.+|.+....|.+...++...+ ..+..
T Consensus 105 ~v~f~~SGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 169 (433)
T PRK08117 105 CFFFSNSGAEAIEGALKLAKH--------------V-TKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQ 169 (433)
T ss_pred EEEEeCcHHHHHHHHHHHHHH--------------h-cCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEE
Confidence 789988899985555543331 1 2222245556666776654432221 01233
Q ss_pred EecCCCCC------------CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEecc
Q 043646 208 IGLDDNGL------------LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 208 v~~~~~~~------------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A 271 (625)
+|...... -++++|++.+++....+++.+|++..+....|.+.| +++|.++|++||+++|+|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv 249 (433)
T PRK08117 170 APYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEV 249 (433)
T ss_pred eCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44321110 156667777753112246889999999999999988 99999999999999999999
Q ss_pred CcCCCcccc----CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 272 ASGPYVKIN----LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 272 ~~~g~~~id----~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
++. ..... ....+. .+|++ ++.|.+++...+|+++.++++. ..+.... .+.+
T Consensus 250 ~tG-~gr~G~~~~~~~~gv-~pDi~--t~sK~lg~G~pigav~~~~~i~--~~~~~~~-~~~T----------------- 305 (433)
T PRK08117 250 QTG-FGRTGEWFAAQTFGV-VPDIM--TIAKGIASGLPLSAVVASKELM--EQWPLGS-HGTT----------------- 305 (433)
T ss_pred hhc-cCccccchhHhhcCC-CCCEe--ehhhhccCCCcceeEEEcHHHH--hhccCCC-CCCC-----------------
Confidence 873 21111 111111 35765 5569997433478889888873 2221111 0111
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-EEEeCCCCCCCcceEEEEeccCCCCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-IQVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
..+.|.....+.++++.+ +. +.+.++.+.+.+++.+.|.++.. ..+.... ...+-++.+.+..+..
T Consensus 306 -----~~~np~~~aaa~a~L~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v-rg~Gl~~gi~~~~~~~-- 372 (433)
T PRK08117 306 -----FGGNPVACAAALATLEVI--KE---EKLLDNANEMGAYALERLEVLKEKHPVIGDV-RGIGLMIGIEIVDPDG-- 372 (433)
T ss_pred -----CCcCHHHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHhcCCceeee-ecCCcEEEEEEecCCC--
Confidence 023333333344555544 21 24555666667777776654310 1111110 1122233333322110
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
....-....+.+.+.+ +||.+.+. + + ..+.+|++++..+|+
T Consensus 373 -------~~~~~~~~~~~~~l~~-~Gv~~~~~---g-~---------------------------~~~~lRl~p~~~~t~ 413 (433)
T PRK08117 373 -------EPDGDAVEKILDKCLE-KGLLFYLC---G-N---------------------------AGNVLRMIPPLTVTK 413 (433)
T ss_pred -------CcchHHHHHHHHHHHH-CCCEEeec---C-C---------------------------CCCEEEEeCCccCCH
Confidence 0000113456677755 69887531 1 0 137899999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 043646 507 EEFEFILAALEFIAAYG 523 (625)
Q Consensus 507 edid~ll~aL~~~~~~~ 523 (625)
+|+++++++|.+++.+.
T Consensus 414 ~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 414 EEIDEGLDILDEALTEY 430 (433)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987653
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-13 Score=149.47 Aligned_cols=368 Identities=15% Similarity=0.095 Sum_probs=203.9
Q ss_pred CccccCCCCCCceEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..| .-|+|.. ..|...+.|.+++.+++...... +. ......+...++.++|.+++....-
T Consensus 80 G~~l~D~dG---~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~-~~----~~~~~~~~~~~lae~L~~~~~~~~~ 151 (504)
T PLN02760 80 GSYVYDING---KKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFY-HS----FWNRTTKPSLDLAKELLEMFTARKM 151 (504)
T ss_pred eeEEEECCC---CEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccce-ec----ccccCcHHHHHHHHHHHhhcCCCCC
Confidence 445555444 3488843 44567889999999988643111 11 0011234456677777777532222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe------------EEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE------------VVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~ 207 (625)
+.+.|+.+|++++..++-.++... . ..-.++.+.+|.....+|.+...++...|.. +..
T Consensus 152 ~~v~f~~SGsEA~e~AlKlAr~~~-------~--~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~ 222 (504)
T PLN02760 152 GKVFFTNSGSEANDTQVKLVWYYN-------N--ALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLH 222 (504)
T ss_pred CEEEEeCChHHHHHHHHHHHHHHH-------H--hcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEE
Confidence 278888888888554443332100 0 0001333335666667777766555433321 222
Q ss_pred EecCCC------C-------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 208 IGLDDN------G-------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 208 v~~~~~------~-------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
++.+.. + ....++|++++.+ ...+++.+|++..+....|.+.| +++|.++|++||+++|+|+
T Consensus 223 ~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DE 301 (504)
T PLN02760 223 TDCPHYWRFHLPGETEEEFSTRLADNLENLILK-EGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADE 301 (504)
T ss_pred eCCCcccccCCCCCcHHHHHHHHHHHHHHHHHh-cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecc
Confidence 222110 0 0112456776642 12246789999999988999988 9999999999999999999
Q ss_pred cC-cCCCccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AA-SGPYVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~-~~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
++ ++|-... .....+. .+|+++++ |.+|+.. .+|++++++++. +.+.+.....+.+
T Consensus 302 V~TGfGRtG~~~a~e~~gv-~PDivtlg--K~lggG~~PigAv~~~~~i~--d~~~~~~~~~~~~--------------- 361 (504)
T PLN02760 302 VICAFGRLGTMFGCDKYNI-KPDLVSLA--KALSSAYMPIGAVLVSPEIS--DVIHSQSNKLGSF--------------- 361 (504)
T ss_pred hhhCCcccchhhHHHhcCC-CCcEEEec--ccccCCccccceEeecHHHH--hhhhcccccccCc---------------
Confidence 98 4543221 1111111 47987776 9997632 367888888873 2222110000000
Q ss_pred chhhhhc-CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 347 DIEEREN-GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 347 ~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
..... .|.|..++...+.++.+. . +.+.++.+.+.+++++.|.++....+++.. ...+.++.+.+..+..
T Consensus 362 --~h~~T~~gnPl~~Aaala~Le~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v-rG~Gl~~gie~~~~~~- 432 (504)
T PLN02760 362 --AHGFTYSGHPVSCAVALEALKIYK--E---RNIPEHVNKIAPRFQDGIKAFSGSPIIGEI-RGTGLILGTEFVDNKS- 432 (504)
T ss_pred --ccCCCCCCCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHhcCCCeeeE-EeCceEEEEEEecCCc-
Confidence 00011 233444444455566552 2 245667777777777777654211111111 1133444444432210
Q ss_pred CCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 426 SPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 426 ~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
...... ...+.+.+.+ +||.+++. ...+|+++
T Consensus 433 --------~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~----------------------------------g~~lrl~P 469 (504)
T PLN02760 433 --------PNDPFPAEWGVGAYFGAECKK-RGMLVRVA----------------------------------GDNIMMSP 469 (504)
T ss_pred --------ccccccchhHHHHHHHHHHHh-CCcEEEec----------------------------------CCEEEEEC
Confidence 000010 2346666644 79988631 14689999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 501 PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 501 ~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++.+|++|+|++++++++++...
T Consensus 470 pl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 470 PLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988664
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.1e-14 Score=141.11 Aligned_cols=295 Identities=15% Similarity=0.114 Sum_probs=191.1
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-cCCeEEEEecCC--CC
Q 043646 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-SLAEVVEIGLDD--NG 214 (625)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G~~vv~v~~~~--~~ 214 (625)
++ .++++ +|+|++...++-.+ .+|||. .+++.++|+....-++. .|++++.|.+.. +.
T Consensus 146 P~-~~Vv~-~G~T~ane~l~fcL---------------adpgda--fLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f 206 (471)
T KOG0256|consen 146 PE-RVVVT-NGATSANETLMFCL---------------ADPGDA--FLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGF 206 (471)
T ss_pred cc-ceEEe-cccchhhHHHHHHh---------------cCCCce--eeecCCCCCcccccceeccCceEEEEEeecCCCc
Confidence 44 78888 78888888888777 479996 99999999998765554 499999998875 34
Q ss_pred CCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccCHH---HHHHHHHHcCCEEEEeccCcCCCcc----cc---CCC
Q 043646 215 LLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYVK----IN---LRS 283 (625)
Q Consensus 215 ~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~l~---~I~~la~~~g~~vivD~A~~~g~~~----id---~~~ 283 (625)
.+++++||+++.+.+. +.+.+-|++++|+||-|++.+-+ .+..++.++++.+|+|+.++...-. +. +..
T Consensus 207 ~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~ 286 (471)
T KOG0256|consen 207 QITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRK 286 (471)
T ss_pred cccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhh
Confidence 8999999999986443 34679999999999999998755 4566777999999999986642211 11 111
Q ss_pred CCCCCCc--EEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 284 RNIDGYD--AIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 284 ~~~~~~D--~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
......| -++.|.+|=||-|+ ..|+++..++-+- ....+. .+| ....+..
T Consensus 287 ~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~Vv-saA~km-------------------------ssf-~~vSs~t 339 (471)
T KOG0256|consen 287 DPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVV-SAATKM-------------------------SSF-GLVSSQT 339 (471)
T ss_pred ccccCCCcEEEEEEeccccCCCceEEEEEEecChHHH-HHHHHH-------------------------hhc-cCCcHHH
Confidence 0000222 46778999999886 4899998766521 000000 000 0111222
Q ss_pred HHHHHH---HHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 361 QMIRAA---LAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 361 ~~~~aa---l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
+-..+. =+.+. ........+|.+..-+++.+.|+++ ||..+.. .+++++|.-..... .+.+.
T Consensus 340 Q~~la~LLSD~~f~--~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s----~AGlF~wvDlr~lL--------~s~tf 404 (471)
T KOG0256|consen 340 QYLLASLLSDEEFT--REYLRENNKRLRIRHRYIVEGLKAL-GIPCLKS----NAGLFCWVDLRKLL--------TSLTF 404 (471)
T ss_pred HHHHHHHhchHHHH--HHHHHHHHHHHHHHHHHHHhhHHhc-CCceeec----CCeeEEEEEhHHhc--------CcCCh
Confidence 211111 01111 1123344555566667788888887 7777654 45788887654321 11122
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
-.-.++.+.+.+.-++.+.+|.+|- |+ .|||+|++|.- +.++.++-.++.|+
T Consensus 405 e~El~Lw~~i~~~vklnlSpG~s~~---C~------------------------EpGWFRvcFAn-~~~~t~~~am~Ri~ 456 (471)
T KOG0256|consen 405 EGELELWERILDNVKLNLSPGSSCH---CH------------------------EPGWFRVCFAN-MSEETLEVAMRRLK 456 (471)
T ss_pred HHHHHHHHHHHHhhccccCCCCcce---ec------------------------CCCeEEEEecc-CCHHHHHHHHHHHH
Confidence 2234677777787799999998874 44 47999999973 45566666888888
Q ss_pred HHHH
Q 043646 518 FIAA 521 (625)
Q Consensus 518 ~~~~ 521 (625)
.++.
T Consensus 457 ~~~~ 460 (471)
T KOG0256|consen 457 QFLD 460 (471)
T ss_pred HHHH
Confidence 7776
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.3e-13 Score=143.90 Aligned_cols=340 Identities=15% Similarity=0.114 Sum_probs=198.9
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+++..|+ -|+|..+ .|...+.|.+++.+++......+ .+ ...+...++.++|++.+....+
T Consensus 67 ~~l~D~dG~---~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~---~~----~~~~~~~~lAe~L~~~~p~~~~- 135 (442)
T TIGR03372 67 NTLIDTQGN---EFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHS---QE----LLDPLRALLAKTLAALTPGKLK- 135 (442)
T ss_pred eEEEECCCC---EEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcc---cc----cCCHHHHHHHHHHHHhCCCCcC-
Confidence 456665553 4888533 45678899999999886432111 11 1134455677778777654333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEI 208 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v 208 (625)
.+.|+.||+.++-..+-.++... -..|...+|......|.....++...+- .+..+
T Consensus 136 ~v~f~~SGsEA~e~AlklAr~~t------------~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~ 203 (442)
T TIGR03372 136 YSFFCNSGTESVEAALKLAKAYQ------------SPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHV 203 (442)
T ss_pred EEEEeCCchHHHHHHHHHHHHHH------------hhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEe
Confidence 78999888887333332222100 0123222344444555555444433221 12333
Q ss_pred ecCCCCCCCHHHHHHHHHHh-hhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--c
Q 043646 209 GLDDNGLLDIEALRSQLELY-KAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--N 280 (625)
Q Consensus 209 ~~~~~~~ld~~~L~~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d 280 (625)
|.+ |.+++++.+++. ...+++.+|++..+....|.+.| +++|.++|++||+++|+|+++. +|-... -
T Consensus 204 p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a 278 (442)
T TIGR03372 204 AFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFA 278 (442)
T ss_pred CCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchh
Confidence 322 677888777531 12246789999999999999988 9999999999999999999985 321111 1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCC--CcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSP--PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~--p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
....+. .+|+++++ |.+|+. ..+|++++++++. +.+. +...+ .| ..|.|
T Consensus 279 ~e~~gv-~PDivt~g--K~lg~G~~Pigavv~~~~i~--~~~~~~~~~~~-~T----------------------~~gnp 330 (442)
T TIGR03372 279 CEHEGV-QPDILCLA--KALGGGVMPIGATIATEAVF--SVLFDNPFLHT-TT----------------------FGGNP 330 (442)
T ss_pred hhhcCC-CCCeeeeh--hhhcCCcccceEEEecHHHH--HhhhccCcccc-CC----------------------CCCCH
Confidence 111111 57988765 999753 2368888888773 2221 11100 01 12444
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----C-cE-EEeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 358 QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----Q-NI-QVLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~-gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
..++...++++.+ +. +.+.++.+.+.+++++.|+++ | .+ ++-+ ++.++.+.+..+.
T Consensus 331 ~~~Aaa~a~L~~i--~~---~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG-----~Gl~~giel~~~~-------- 392 (442)
T TIGR03372 331 LACAAALATINEL--LE---KNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARG-----KGLLMAIEFRDNE-------- 392 (442)
T ss_pred HHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec-----ceEEEEEEeCChH--------
Confidence 4455555666665 22 234556666666666666543 3 22 2222 3455555543211
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
....+.+.|.+ +||.+.... . .+..+||.++..+|++|+|+
T Consensus 393 -------~~~~i~~~l~~-~Gvl~~~~~-~------------------------------~~~~lr~~Ppl~~t~~~id~ 433 (442)
T TIGR03372 393 -------IGYAFAKELFQ-QNILVAGTL-N------------------------------NAKSIRIEPPLTITIEQCAL 433 (442)
T ss_pred -------HHHHHHHHHHH-CCcEEeecC-C------------------------------CCCEEEEECCcccCHHHHHH
Confidence 13467777765 699985310 0 13679999999999999999
Q ss_pred HHHHHHHH
Q 043646 512 ILAALEFI 519 (625)
Q Consensus 512 ll~aL~~~ 519 (625)
++++|++.
T Consensus 434 ~~~~l~~~ 441 (442)
T TIGR03372 434 VIKAAKDA 441 (442)
T ss_pred HHHHHHHh
Confidence 99999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.8e-13 Score=146.03 Aligned_cols=373 Identities=13% Similarity=0.060 Sum_probs=203.0
Q ss_pred CCCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~ 137 (625)
+.+..+++..|+ -|+|..+ .|..++.|.+++.+++.... +...+ ....+...++.+++++++..+
T Consensus 41 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~---~~~~~---~~~~~~~~~la~~l~~~~p~~ 111 (460)
T PRK06541 41 GEGCYIWDDRGK---RYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLA---FFPLW---SYAHPPAIELAERLAALAPGD 111 (460)
T ss_pred CcccEEEeCCCC---EEEECCccHHhccCCCCCHHHHHHHHHHHhhCc---Ccccc---ccCCHHHHHHHHHHHHhCCCC
Confidence 334556666553 4888633 45677899999999886421 11000 011234455677777776543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eE
Q 043646 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EV 205 (625)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~v 205 (625)
-+ .+.|+.+|+.+.-..+-.++.... .. =.++...+|.....+|.....++...|. .+
T Consensus 112 ~~-~v~f~~sGseAve~AlklAr~~~~--------~~-g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~ 181 (460)
T PRK06541 112 LN-RVFFTTGGSEAVESAWKLAKQYFK--------LT-GKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGG 181 (460)
T ss_pred cC-EEEEcCCcHHHHHHHHHHHHHHHH--------hc-CCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCc
Confidence 33 799998888874333322221000 00 0122222344445555555433322221 23
Q ss_pred EEEecCCCCC-----CC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEE
Q 043646 206 VEIGLDDNGL-----LD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 206 v~v~~~~~~~-----ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
..+|...... -+ ++.+++.+... ..+.+.+|+++.+.++.|.+.+ +++|.++|++||+++|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~ 260 (460)
T PRK06541 182 FRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE-GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVS 260 (460)
T ss_pred EEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3343221100 12 35677777531 1235678888888999999988 99999999999999999
Q ss_pred eccC-cCCCcccc--CCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc---ccCCceEEeeccccccc
Q 043646 269 DFAA-SGPYVKIN--LRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS---TCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 269 D~A~-~~g~~~id--~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~---~~ggg~v~~~~~~~~~~ 341 (625)
|+++ ++|-.... ....+. .+|+++++ |.+++.. .+|++++++++.. .+.+. ...+.+
T Consensus 261 DEV~tGfGR~G~~~a~~~~gv-~PDivt~g--K~l~~G~~pigav~~~~~i~~--~~~~~~~~~~~~~T----------- 324 (460)
T PRK06541 261 DEVICAFGRLGEMFGCERFGY-VPDIITCA--KGITSGYSPLGAMIASDRLFE--PFLDGPTMFLHGYT----------- 324 (460)
T ss_pred echhhCCCcCchhhhhhhcCC-CCCEEEec--ccccCCccceeEEEEcHHHHH--HhhcCCCccccCCC-----------
Confidence 9998 55422211 111111 47888754 9997532 4788899888732 22110 000011
Q ss_pred cccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 342 TLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
..|.|..+++..+.++.+ + .+.+.++.+++.+++.+.|+++....+++.. ...+.++.+.+..
T Consensus 325 -----------~~gnp~~~aaala~l~~l--~---~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~v-rg~Gl~~~ie~~~ 387 (460)
T PRK06541 325 -----------FGGHPVSAAVALANLDIF--E---REGLLDHVRDNEPAFRATLEKLLDLPIVGDV-RGDGYFYGIELVK 387 (460)
T ss_pred -----------CCCCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHhhcCCCeEEE-EecceEEEEEEec
Confidence 123333333334445544 2 2245567777788888877665221111110 1134555555432
Q ss_pred CCCCCCccccccCC--CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 422 TTNSSPENMKIERN--KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 422 ~~~~~~~~~~~~~~--~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
+.... ...... .......+.+.|.+ +||.+.+.. + ....+||+
T Consensus 388 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~~-~------------------------------g~~~lrl~ 432 (460)
T PRK06541 388 DKATK---ETFTDDESERLLRGFLSPALFE-AGLYCRADD-R------------------------------GDPVVQLA 432 (460)
T ss_pred Ccccc---cCCcchhhhhhHHHHHHHHHHh-CCeEEEecC-C------------------------------CCCEEEEE
Confidence 21000 000000 00011245566655 799987421 0 12679999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
+++.+|++|+|+++++|++++.+.+
T Consensus 433 Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 433 PPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-13 Score=142.92 Aligned_cols=352 Identities=14% Similarity=0.100 Sum_probs=196.6
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+. |...+.|.+++.+++.... ..... ....+...++.+++++++.....
T Consensus 31 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~-~~~~~-----~~~~~~~~~la~~l~~~~p~~~~ 101 (421)
T PRK06777 31 NATLWDVEG---REYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT-HTAYQ-----IVPYASYVTLAERINALAPIDGP 101 (421)
T ss_pred cCEEEeCCC---CEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc-ccccc-----ccCChHHHHHHHHHHHhCCCCCC
Confidence 344555545 358886443 5678899999999886431 11110 01122334566777777653222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
+.+.|+.+|+.+.-.++-.++. . .|.+.+|.....+|.....++...|. .+.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~ 166 (421)
T PRK06777 102 AKTAFFTTGAEAVENAVKIARA--------------Y-TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIF 166 (421)
T ss_pred ceEEEeCCcHHHHHHHHHHHHH--------------h-hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcE
Confidence 3788888888874444433331 1 22222344445555555433332221 112
Q ss_pred EEecCCC--C---CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-cC---HHHHHHHHHHcCCEEEEeccCcC-CC
Q 043646 207 EIGLDDN--G---LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-SD---TRSIARLLHQYGGFACFDFAASG-PY 276 (625)
Q Consensus 207 ~v~~~~~--~---~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-~~---l~~I~~la~~~g~~vivD~A~~~-g~ 276 (625)
.++.... + ..+++.+++.+.+....+++.+|++..+.+..|.. .| +++|.++|++||+++|+|+++.. +.
T Consensus 167 ~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr 246 (421)
T PRK06777 167 HALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFAR 246 (421)
T ss_pred EcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCcc
Confidence 2222211 1 12356677777531123467899999998888965 44 89999999999999999999762 22
Q ss_pred cc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
.. ......+. .+|+++ +.|.+++...+|+++.++++. +.+.+... +.+ ..
T Consensus 247 ~g~~~~~~~~~~-~pDiv~--~sK~l~~G~pigav~~~~~i~--~~~~~~~~-~~T----------------------~~ 298 (421)
T PRK06777 247 TGKLFAMEYYDV-KPDLIT--MAKSLGGGMPISAVVGRAEVM--DAPAPGGL-GGT----------------------YA 298 (421)
T ss_pred CCchhhhhhcCC-CCCEEe--eehhhcCCCceEEEEEcHHHH--hccCCCCC-CCC----------------------CC
Confidence 11 11111111 468775 459997434489999998873 33322111 001 12
Q ss_pred CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccc
Q 043646 355 GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENM 430 (625)
Q Consensus 355 gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~ 430 (625)
+.|....++.++++.+ +. +.+.++.+++.+++.+.|+++ |.+.-+.+ ++.++.+.+..+..
T Consensus 299 ~~p~~~aaa~a~L~~~--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg----~G~~~~i~~~~~~~------ 363 (421)
T PRK06777 299 GNPLAVAAALAVLDVI--AE---EKLCQRALILGAHLVEVLEKAKASCPAIVDIRA----RGSMVAVEFNDPQT------ 363 (421)
T ss_pred cCHHHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecC----ceEEEEEEEecCcc------
Confidence 3333334444555544 21 356667777777777777653 43333322 34455443322110
Q ss_pred cccCCCCCC--hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 431 KIERNKPLH--GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 431 ~~~~~~~l~--~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
+..-. ...+...+.+ .||.+.++..+ .+++||++++..++++
T Consensus 364 ----~~~~~~~~~~l~~~~~~-~Gv~i~~~~~~-------------------------------g~~lr~~ppl~i~~~~ 407 (421)
T PRK06777 364 ----GKPSPEFTRQYQRQALE-EGLLLLSCGVH-------------------------------GNVIRFLYPLTIPDAQ 407 (421)
T ss_pred ----CCccHHHHHHHHHHHHh-CCeEEeecCCC-------------------------------CCEEEEeCCCCCCHHH
Confidence 00000 1234444444 79998764322 2689999999999999
Q ss_pred HHHHHHHHHHHH
Q 043646 509 FEFILAALEFIA 520 (625)
Q Consensus 509 id~ll~aL~~~~ 520 (625)
+++++++|++++
T Consensus 408 i~~~~~~l~~~l 419 (421)
T PRK06777 408 FSKALNILTRLL 419 (421)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-12 Score=141.02 Aligned_cols=352 Identities=14% Similarity=0.014 Sum_probs=197.3
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..| .-|+|..+ .|..++.|.+++.+++......... ....+...++.+.|++.+...-+
T Consensus 33 ~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~------~~~~~~~~~la~~L~~~~p~~~~- 102 (443)
T PRK08360 33 AKVWDIEG---NEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPI------YGFPVEPLLLAEKLIEIAPGDNP- 102 (443)
T ss_pred eEEEECCC---CEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccc------ccCcHHHHHHHHHHHHhCCCCCC-
Confidence 44444444 34888543 4566889999999988643111110 01123445677778888764434
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEI 208 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v 208 (625)
.|.|+.+|+.+.-.++-.++. . .|.+.++......|.....++...|. .+..+
T Consensus 103 ~v~f~~sGsEAve~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~ 167 (443)
T PRK08360 103 KVSFGLSGSDANDGAIKFARA--------------Y-TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYI 167 (443)
T ss_pred EEEEcCCHHHHHHHHHHHHHH--------------h-cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEE
Confidence 799998888874444433331 1 22222333344556554444433221 23334
Q ss_pred ecCCCCC------------CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccC
Q 043646 209 GLDDNGL------------LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAA 272 (625)
Q Consensus 209 ~~~~~~~------------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~ 272 (625)
|...... -+++.+++.+......+++++|+++...|++|.+.+ +++|.++|++||+++|+|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 247 (443)
T PRK08360 168 PYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQ 247 (443)
T ss_pred eCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 4322100 123456666653112357899999988899999876 789999999999999999997
Q ss_pred c-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 273 S-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 273 ~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
. ++.... .....+. .+|++++ .|.+++...+|++++++++. +.+.+...+ .+
T Consensus 248 ~g~gr~G~~~a~~~~~~-~pDiitl--sK~l~~G~pigav~~~~~i~--~~~~~~~~~-~T------------------- 302 (443)
T PRK08360 248 SGLGRTGKWFAIEHFGV-EPDIITL--GKPLGGGLPISATIGRAEIM--DSLPPLAHA-FT------------------- 302 (443)
T ss_pred cCCCcCccchhhhhcCC-CCCEEEe--cccccCCceeEEEEEcHHHH--hhhcCCCCC-CC-------------------
Confidence 6 332221 1111111 4687766 69998433479999888773 333211100 00
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
..+.|.....+.++++.+. . +.+.++.+.+.+++++.|+++ |.+ +.. ..++.++.+.+..+..
T Consensus 303 ---~~~~p~~~aaa~a~l~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v---~~v-rg~Gl~~gie~~~~~~- 369 (443)
T PRK08360 303 ---LSGNPVASAAALAVIEEIE--E---KNLLKRAEKLGNYTKKRLEEMKKKHELI---GDV-RGIGLMIGVDLVKDRE- 369 (443)
T ss_pred ---CCcCHHHHHHHHHHHHHHH--H---cCHHHHHHHHHHHHHHHHHHHHHhCCCe---eee-eccceEEEEEEecCCc-
Confidence 1123333333345555542 1 234566666666666666543 322 111 1234444444432210
Q ss_pred CCccccccCCCC--CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC
Q 043646 426 SPENMKIERNKP--LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY 503 (625)
Q Consensus 426 ~~~~~~~~~~~~--l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~ 503 (625)
...+ -....+...+.+ +||.+... ....+|+++++.
T Consensus 370 --------~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------------------------------~~~~lr~~P~l~ 407 (443)
T PRK08360 370 --------TKERAYEEAAKVVWRAWE-LGLIVTFF---------------------------------SGNVLRIQPPLT 407 (443)
T ss_pred --------ccCccHHHHHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEeCCCC
Confidence 0000 012356666654 79987521 126799999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 043646 504 MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 504 ~t~edid~ll~aL~~~~~~~ 523 (625)
+|++|++++++++++++...
T Consensus 408 ~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 408 IEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-13 Score=149.32 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-HH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-WR 199 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~ 199 (625)
....++++..|+.||++.. ..++ ||||.++..++.+. +.+||. |++....|-|+..+ +.
T Consensus 174 G~i~eAq~~AA~~fgAd~t--yFlv-NGTS~gn~a~i~a~---------------~~~Gd~--VLvdRN~HKSv~hgaLi 233 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKT--YFVL-NGTSASNKVVTNAL---------------LTPGDL--VLFDRNNHKSNHHGALI 233 (720)
T ss_pred hHHHHHHHHHHHHhCCCce--EEEe-CChhHHHHHHHHHh---------------cCCCCE--EEeecccHHHHHHHHHH
Confidence 4678899999999999744 4454 89999888888876 589995 99999999999986 88
Q ss_pred HcCCeEEEEecCC--C---CCCCHH-----HHHHHHHHhhh----CCC-CeEEEEecccCccccccCHHHHHHH-HHHcC
Q 043646 200 QSLAEVVEIGLDD--N---GLLDIE-----ALRSQLELYKA----AKR-PMLGSFSACSNVTGIYSDTRSIARL-LHQYG 263 (625)
Q Consensus 200 ~~G~~vv~v~~~~--~---~~ld~~-----~L~~~l~~~~~----~~~-~~lv~~~~~~n~TG~~~~l~~I~~l-a~~~g 263 (625)
+.|+.++++.... . +.++.+ .++++|.++.. ..+ .++++++++ |..|++.++++|+++ +|.++
T Consensus 234 LsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~ 312 (720)
T PRK13578 234 QAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD 312 (720)
T ss_pred HcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC
Confidence 9999999987653 2 345654 48888875310 113 488888876 578999999999998 68888
Q ss_pred CEEEEeccCcCCC--ccc--cCCCC-CCCCCc----EEEEcCCCCCCCCCCceEEEEeccc
Q 043646 264 GFACFDFAASGPY--VKI--NLRSR-NIDGYD----AIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 264 ~~vivD~A~~~g~--~~i--d~~~~-~~~~~D----~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+++||+||+.-. .+. ++... ...|+| +++-|.||.+++-...++|.+++..
T Consensus 313 -~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~ 372 (720)
T PRK13578 313 -YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH 372 (720)
T ss_pred -cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc
Confidence 999999987422 121 11111 112778 9999999999887777888876654
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-14 Score=147.02 Aligned_cols=322 Identities=12% Similarity=0.070 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-HHHc
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-WRQS 201 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~ 201 (625)
+.++++.+++++|.+ .+++|.+|+. +++.+. .+. ++|||. | ++.+|.....+ +...
T Consensus 73 ~~~lE~~va~~~G~~---~av~v~sGT~-Al~ll~-~l~--------------l~pGDe--V--psn~~f~Tt~ahIe~~ 129 (450)
T TIGR02618 73 FYHLERTVRELYGFK---YVVPTHQGRG-AENLLS-QIA--------------IKPGDY--V--PGNMYFTTTRYHQEKN 129 (450)
T ss_pred HHHHHHHHHHHHCCC---eEEEcCCHHH-HHHHHH-HhC--------------CCCcCE--E--CCceeHHHHHHHHHhC
Confidence 557889999999986 5788855555 566554 332 689983 4 55666555555 6777
Q ss_pred CCeEEEEecC----------CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccc---cCHHHHHHHHHHcCCEEE
Q 043646 202 LAEVVEIGLD----------DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIY---SDTRSIARLLHQYGGFAC 267 (625)
Q Consensus 202 G~~vv~v~~~----------~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~---~~l~~I~~la~~~g~~vi 267 (625)
|+.++.++.+ .+|.+|+++|+++|++. ...++++|.+..++|.. |.. .++++|.++|++||+.+|
T Consensus 130 Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~-~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi 208 (450)
T TIGR02618 130 GATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV-GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVF 208 (450)
T ss_pred CeEEEeeecccccccccCCCCCCCcCHHHHHHHhccc-cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEE
Confidence 8866666443 25889999999999842 11245678888888866 787 457999999999999999
Q ss_pred EeccCcCCC-----------ccccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEeccc-cc-cCCCCCcccCCceE
Q 043646 268 FDFAASGPY-----------VKINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISKAL-YQ-LGSSPPSTCGGGTV 331 (625)
Q Consensus 268 vD~A~~~g~-----------~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~-~~-l~~~~p~~~ggg~v 331 (625)
.|+|++++. ...++++. -...+|.+++|.+|-+++|.| |+++.+++- +. .+...+.+ +|..
T Consensus 209 ~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~-eG~~- 285 (450)
T TIGR02618 209 YDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVF-EGMP- 285 (450)
T ss_pred EEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhc-CCcc-
Confidence 999988743 11222110 023689999999999999987 888866543 21 11111112 1110
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
..|..+...+ ++++.-+.+.... ...++....+++|.+.|.+. |+.++.|.
T Consensus 286 ---------------------tyGgla~r~~--~ala~gL~e~~~~-~y~~~r~~~a~~La~~L~~~-Gvpv~~p~---- 336 (450)
T TIGR02618 286 ---------------------SYGGLAGRDM--EAMAIGIREAVDY-EYIEHRVKQVRYLGDKLKAA-GVPIVEPV---- 336 (450)
T ss_pred ---------------------ccCchhhhhH--HHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHC-CCcccCCC----
Confidence 1121111111 2222222232222 33444455688999999887 88886654
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
.++..|.-....... ..........++..|-.+.||...- |+. .++.+++.. +-
T Consensus 337 ggh~V~vda~~~lph------~~~~~~p~~al~~~ly~~~gir~~e~g~~--------~~~~~~~~~-----------~~ 391 (450)
T TIGR02618 337 GGHAVFLDARRFLPH------IPQDQFPAQSLAASIYVETGVRSMERGIV--------SAGRNNVTG-----------EH 391 (450)
T ss_pred CcceEEEEhHHhCCC------CChhhChHHHHHHHHHHHhCccEEeecce--------ecccCCCCC-----------cc
Confidence 234444421110000 0111223455666666667775331 221 111110000 00
Q ss_pred CC--CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 491 VK--PGWTRITFP-YYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 491 ~~--~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
.. -..+|+.++ -.-|.+.+|++.++|..+.++...
T Consensus 392 ~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 392 HRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred cCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 01 267999996 333789999999999999887644
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-12 Score=140.00 Aligned_cols=348 Identities=16% Similarity=0.084 Sum_probs=194.0
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-- 137 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-- 137 (625)
+..+++..|+ -|+|..+. |..++.|.+++.+++... ...+.. ....+...++.+++++.+..+
T Consensus 26 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~~-----~~~~~~~~~lae~l~~~~~~~~~ 96 (412)
T TIGR02407 26 GSTLWDEDGK---EYIDFFAGAGALNYGHNNPKLKQALIDYLADD-GIIHSL-----DMATEAKREFLETFNEIILKPRG 96 (412)
T ss_pred cCEEEeCCCC---EEEEcccchhhccCCCCCHHHHHHHHHHHhhc-cceecc-----ccCcHHHHHHHHHHHHhccCccC
Confidence 4555555553 48886443 677899999999988532 111110 012344555667777764222
Q ss_pred CCCcEEEe-CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------Ce
Q 043646 138 QADAIIFC-GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AE 204 (625)
Q Consensus 138 ~~~~vift-~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~ 204 (625)
.++.+.|+ .+|+.+.-.++-.++. . +|.+.+|......|.....++...| ..
T Consensus 97 ~~~~~~f~~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~ 161 (412)
T TIGR02407 97 LDYKVQFPGPTGTNAVESALKLARK--------------V-TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSN 161 (412)
T ss_pred CCceEEEeCCCchHHHHHHHHHHhh--------------h-cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCC
Confidence 12246664 5788874444433331 1 2222234444555555544443222 12
Q ss_pred EEEEecCCCC---CCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CC
Q 043646 205 VVEIGLDDNG---LLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GP 275 (625)
Q Consensus 205 vv~v~~~~~~---~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g 275 (625)
+..+|..... .-+++.+++.+.++... +++.+|++..+.+..|.+.+ +++|.++|++||+++|+|+++. +|
T Consensus 162 ~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~G 241 (412)
T TIGR02407 162 VSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCG 241 (412)
T ss_pred eEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 3444432110 12467788888632111 35688999999999998643 7899999999999999999976 32
Q ss_pred Cc----cccCCCCCCCCCcEEEEcCCCCCCC-CCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 276 YV----KINLRSRNIDGYDAIFLATHKFLGG-PGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 276 ~~----~id~~~~~~~~~D~v~~S~hK~lgg-p~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
-. ..+.... .+|+++++ |++++ ...+|+++++++. . ...+... +++
T Consensus 242 RtG~~~a~~~~~v---~PDi~~~~--K~lg~~G~pigav~~~~~~-~--~~~~~~~-~~T-------------------- 292 (412)
T TIGR02407 242 RTGTFFSFEPAGI---EPDIVCLS--KSISGYGLPLALTLIKPEL-D--VWKPGEH-NGT-------------------- 292 (412)
T ss_pred ccchhHHhcccCC---CCCEEEec--hhccCCccceeEEEEchhh-h--ccCCCcc-CCC--------------------
Confidence 21 1122222 67988776 99974 3348999998775 1 1211110 011
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCC
Q 043646 351 RENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
..|.|..+....++++.++ + .+.+.++.+.+.+++.++|+. ++.+.. .. ...+.++.+.+.+..
T Consensus 293 --~~gnpl~~aaa~a~l~~~i-~---~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~--~v-rg~Gl~~~l~l~~~~--- 360 (412)
T TIGR02407 293 --FRGNNLAFVTATAALEYYW-S---DDAFEKAVQRKSEIIQERLDRIVAEYPELIK--QV-RGRGLMQGIECGDGD--- 360 (412)
T ss_pred --CCccHHHHHHHHHHHHHHh-c---ccHHHHHHHHHHHHHHHHHHHHHhhCCCceE--ee-ecceeEEEEEecChH---
Confidence 0133333333345566322 2 234555666666666665543 442211 10 112333333332211
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
....+.+.+.+ +||.+.+... .++.+|++++..+|+
T Consensus 361 ------------~~~~~~~~~~~-~Gv~v~~~~~-------------------------------~~~~lr~~p~l~~t~ 396 (412)
T TIGR02407 361 ------------LAGKIAKAAFE-NGLIIETSGP-------------------------------NDEVIKLLPPLTIDE 396 (412)
T ss_pred ------------HHHHHHHHHHH-CCCEEeccCC-------------------------------CCCEEEEECCCCCCH
Confidence 13456777755 7999864210 136799999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043646 507 EEFEFILAALEFIAAY 522 (625)
Q Consensus 507 edid~ll~aL~~~~~~ 522 (625)
+|+++++++|++++.+
T Consensus 397 ~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 397 ETLQQGLDILEQAVEE 412 (412)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998753
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=144.27 Aligned_cols=318 Identities=13% Similarity=0.078 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-HHHc
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-WRQS 201 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~ 201 (625)
+.++++.+++++|.+ .+++|.+|+.+ ++.+ ..++ +++||. | ++.+|.....+ +...
T Consensus 80 ~~~LE~~vAe~lG~e---~aV~v~sGTaA-l~ll-~~l~--------------v~pGd~--V--p~n~~f~Tt~ahI~~~ 136 (460)
T PRK13237 80 FYHLEETVQEYYGFK---HVVPTHQGRGA-ENLL-SRIA--------------IKPGQY--V--PGNMYFTTTRYHQELN 136 (460)
T ss_pred HHHHHHHHHHHHCCC---eEEEeCCHHHH-HHHH-HHhC--------------CCCcCE--E--CCccchHhhHHHHHhC
Confidence 456889999999986 56888566655 5544 3332 678883 3 66666666555 6667
Q ss_pred CCeEEEEec----------CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-cccc---CHHHHHHHHHHcCCEEE
Q 043646 202 LAEVVEIGL----------DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYS---DTRSIARLLHQYGGFAC 267 (625)
Q Consensus 202 G~~vv~v~~----------~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~---~l~~I~~la~~~g~~vi 267 (625)
|+..+-+.. ..+|.+|+++|+++|++. ..+++.++.+..++|.. |... ++++|.++|++||+.||
T Consensus 137 Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~-~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi 215 (460)
T PRK13237 137 GGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV-GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVF 215 (460)
T ss_pred CcEEEeeecccccccccCCCCCCCcCHHHHHHHhccc-cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEE
Confidence 885544431 126899999999999842 12356677888888888 5664 67999999999999999
Q ss_pred EeccCcCCCc-----------cccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEecccc-c-cCCCCCcccCCceE
Q 043646 268 FDFAASGPYV-----------KINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISKALY-Q-LGSSPPSTCGGGTV 331 (625)
Q Consensus 268 vD~A~~~g~~-----------~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~-~-l~~~~p~~~ggg~v 331 (625)
.|+|++.+.. ...+.+. -....|.+++|+||.+++|.| |+++++++-. + ++.+...+.|.-+
T Consensus 216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG~~t- 293 (460)
T PRK13237 216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVYEGMPS- 293 (460)
T ss_pred EECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhccccCCCcC-
Confidence 9999987732 1111100 012579999999999998876 8888876642 1 1111112212111
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
.|..+.-.+ ++++.-+.+....+.+..+. ...+||.+.|.+. |+.|+.|.
T Consensus 294 ----------------------ygg~~grd~--~alAvgl~E~~~~~y~~~ri-~~~~~l~~~L~~~-Gvpv~~p~---- 343 (460)
T PRK13237 294 ----------------------YGGMAGRDM--EAMAIGIEESVQYEYIEHRV-GQVRYLGEKLLAA-GVPIVEPV---- 343 (460)
T ss_pred ----------------------CCChhhhHH--HHHHhHHHhhchHHHHHHHH-HHHHHHHHHHHHC-CCceecCC----
Confidence 111111111 22222222333333444444 4588999999775 88888764
Q ss_pred cceEEEEe----ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee-cCCCCCchhhHhhhcCChhhHHHHHHHHHh
Q 043646 412 QAILSFLV----YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR-GGCACAGPYGHTLLAFDQTRSLEIRSAIQK 486 (625)
Q Consensus 412 ~~i~~f~~----~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 486 (625)
+++-.|.- .|.. .........++..|-.+.||... -|.. +++.+.+..
T Consensus 344 ggH~v~vda~~~lph~----------~~~~~p~~al~~~ly~~~GiR~~e~g~~--------~~~~~~~~~--------- 396 (460)
T PRK13237 344 GGHAVFLDARRFLPHL----------PQDQFPAQALAAELYIESGVRSMERGIV--------SAGRDPKTG--------- 396 (460)
T ss_pred CceEEEEEhHHhCCCC----------CcccChHHHHHHHHHHHhCcCeEeecce--------ecccCCCCC---------
Confidence 24444332 1111 11122345566666666777542 1221 111110000
Q ss_pred CCCCCC--CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 487 GYLGVK--PGWTRITFP-YYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 487 g~~g~~--~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+-.. -..+|+.++ -.-|.+.+|++.++|..+.++...
T Consensus 397 --~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 397 --ENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred --ccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 0001 267999996 333789999999999999887644
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=142.58 Aligned_cols=366 Identities=11% Similarity=0.030 Sum_probs=198.6
Q ss_pred CCCccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~ 137 (625)
+.+..+++..|+ -|+|..+. |...+.|.+++.+++......+... ...+...++.++|++++...
T Consensus 38 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~------~~~~~~~~la~~L~~~~p~~ 108 (445)
T PRK09221 38 AEGMYYTDADGR---KILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQ------MGHPLAFELAERLAELAPGG 108 (445)
T ss_pred ccccEEEeCCCC---EEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccc------cCCHHHHHHHHHHHHhCCCC
Confidence 344566666553 48887443 6678899999998886431111110 11234456777788877533
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeE
Q 043646 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEV 205 (625)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~v 205 (625)
.+ .|.|+.+|+.+.-..+-.++.... . .-+++...+|.....+|.....++...| ..+
T Consensus 109 ~~-~v~f~~sGseAve~AlklAr~~~~-----~----~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~ 178 (445)
T PRK09221 109 LD-HVFFTNSGSESVDTALKIALAYHR-----A----RGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGV 178 (445)
T ss_pred CC-EEEEeCCcHHHHHHHHHHHHHHHH-----h----cCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCC
Confidence 33 799998888873333322221000 0 0011222233444445544333222111 112
Q ss_pred EEEecCC---C---CC-------CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEE
Q 043646 206 VEIGLDD---N---GL-------LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 206 v~v~~~~---~---~~-------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
..+|... . +. ..++++++.+... ..+++.+|++..+....|.+.| +++|.++|++||+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~ 257 (445)
T PRK09221 179 DHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH-DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIF 257 (445)
T ss_pred eEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc-CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 3333221 0 00 0135677777631 1246789999999999999988 99999999999999999
Q ss_pred eccCc-CCCc--cccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 269 DFAAS-GPYV--KINLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 269 D~A~~-~g~~--~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
|+++. +|-. .......+. .+|+++++ |.+++. ..+|++++++++.. .+.... . ....+
T Consensus 258 DEV~tG~GRtG~~~~~~~~gv-~PDi~~~g--K~l~gG~~Pi~av~~~~~i~~--~~~~~~-~-~~~~~----------- 319 (445)
T PRK09221 258 DEVITGFGRLGAAFAAERFGV-TPDIITFA--KGLTNGAIPMGAVIASDEIYD--AFMQGP-E-YAIEF----------- 319 (445)
T ss_pred eehhhCCCcCchhhHHHhcCC-CCCEEEec--cccccCcccceeeEEcHHHHH--hhccCc-c-ccccc-----------
Confidence 99974 4321 111111211 46888776 888642 12578888888732 221100 0 00000
Q ss_pred ccchhhhhcC-CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCC
Q 043646 345 LEDIEERENG-GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 345 ~~~~~~~~~~-gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
...... |.|..+....+.++.+. . +.+.++.+.+.+++++.|+++.....+.+. ...+-...+.+.+..
T Consensus 320 ----~~~~T~~~~pl~~aaa~a~L~~i~--~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rg~Gl~~~v~~~~~~ 389 (445)
T PRK09221 320 ----FHGYTYSAHPVACAAGLATLDIYR--E---EDLFERAAELAPYFEDAVHSLKGLPHVIDI-RNIGLVAGIELAPRP 389 (445)
T ss_pred ----ccccCCCcCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHhhccCCCEEEE-ecCceEEEEEEeccc
Confidence 000111 22333333344455542 1 245678888888888888765221111111 012222233232211
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY 503 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~ 503 (625)
.+.......+.+.+.+ .||.++.+ ...+|+++++.
T Consensus 390 ----------~~~~~~~~~~~~~~~~-~Gv~~~~~----------------------------------~~~lr~~Ppl~ 424 (445)
T PRK09221 390 ----------GAPGARGYEAFMKCFE-KGLLVRYT----------------------------------GDTIALSPPLI 424 (445)
T ss_pred ----------ccccchHHHHHHHHHH-CCeEEeec----------------------------------CCEEEEECCcc
Confidence 0001123457777755 69998631 25699999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 043646 504 MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 504 ~t~edid~ll~aL~~~~~~ 522 (625)
+|++|+++++++|++++.+
T Consensus 425 ~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 425 IEKAQIDELVDALGDALRA 443 (445)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999998864
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=143.01 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH---
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR--- 199 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--- 199 (625)
...++..++++-|+.. .++|. ||..+ +..++..+ +++|+. |++...-|......++
T Consensus 79 ~~~le~~iaal~ga~~--~l~fs-SGmaA-~~~al~~L---------------~~~g~~--iV~~~~~Y~gT~~~l~~~~ 137 (409)
T KOG0053|consen 79 RDVLESGIAALEGAAH--ALLFS-SGMAA-ITVALLHL---------------LPAGDH--IVATGDVYGGTLRILRKFL 137 (409)
T ss_pred hHHHHHHHHHHhCCce--EEEec-ccHHH-HHHHHHHh---------------cCCCCc--EEEeCCCcccHHHHHHHHH
Confidence 4557788999999864 35564 77666 44444444 467775 7777666666654443
Q ss_pred -HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 200 -QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 200 -~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
..|++...+..+ |++.+++++. +++++|.+.+|+||+..+.|+++|.++||++|+++|||.+-+.++ .
T Consensus 138 ~~~gie~~~vd~~-----~~~~~~~~i~-----~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~-~ 206 (409)
T KOG0053|consen 138 PKFGGEGDFVDVD-----DLKKILKAIK-----ENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY-N 206 (409)
T ss_pred HHhCceeeeechh-----hHHHHHHhhc-----cCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc-c
Confidence 468888888765 6788888887 589999999999999999999999999999999999999977763 2
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEe
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGPGT--PGILLIS 312 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~ 312 (625)
.+.-++ |+|+++.|..||++|-.. .|.++++
T Consensus 207 ~~pL~l---GADIV~hSaTKyi~Ghsdvi~G~iv~n 239 (409)
T KOG0053|consen 207 QDPLPL---GADIVVHSATKYIGGHSDVIGGSVVLN 239 (409)
T ss_pred cChhhc---CCCEEEEeeeeeecCCcceeeeEEecC
Confidence 333333 899999999999997654 4666665
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-12 Score=137.35 Aligned_cols=348 Identities=17% Similarity=0.139 Sum_probs=207.9
Q ss_pred ceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 77 RLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 77 ~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
...|||..+ .|-..+.|++++.+++..+. ..++.. ...+...++.+++.+.+..+..+.++|+.+|+.
T Consensus 55 G~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~-h~~~~~-----~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGae 128 (447)
T COG0160 55 GNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN-HTHTRD-----LYYEPYVELAEKLTALAPGSGLKKVFFGNSGAE 128 (447)
T ss_pred CCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh-cccCCc-----ccchhHHHHHHHHHHhCCcccCCeEEecCCcHH
Confidence 456898766 35568899999999886542 122211 122556667777778777643337888878888
Q ss_pred H---HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCCC
Q 043646 151 A---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDNG 214 (625)
Q Consensus 151 a---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~~ 214 (625)
+ +|+.. +.. .|...+|-.....|.....++...| ..|..+|.....
T Consensus 129 A~E~AiKiA-r~~-----------------Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~y 190 (447)
T COG0160 129 AVEAAIKIA-RAY-----------------TGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPY 190 (447)
T ss_pred HHHHHHHHH-HHH-----------------hCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccc
Confidence 8 33332 222 2222245555566665555544322 136667654311
Q ss_pred ------------CCCHHHHHHHHHHhh-hCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 215 ------------LLDIEALRSQLELYK-AAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 215 ------------~ld~~~L~~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
....+.++..+.... ...++.++++..+....|.+.| ++++.++|++||+++|+|++|..-..
T Consensus 191 r~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GR 270 (447)
T COG0160 191 RCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGR 270 (447)
T ss_pred cCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 112344556554322 2236889999999999999977 78999999999999999999874221
Q ss_pred ---cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 278 ---KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 278 ---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
-+.+...+. .+|+++++ |.+|+...+|.++.++++ .. ..|...++ ...
T Consensus 271 TG~~fa~E~~gv-~PDivt~a--K~ig~G~Pl~avv~r~ei--~~-~~~g~~~~-----------------------Tf~ 321 (447)
T COG0160 271 TGKMFAFEHFGV-EPDIVTLA--KSLGGGLPLSAVVGRAEI--MD-WPPGGHGG-----------------------TFG 321 (447)
T ss_pred cccchhhhhcCC-CCCEEEec--ccccCCCceeEEeccHHh--cc-cCCcccCC-----------------------CCC
Confidence 122222222 57999988 999875558999999988 22 22211111 113
Q ss_pred CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCcccccc
Q 043646 355 GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE 433 (625)
Q Consensus 355 gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~ 433 (625)
|.|-.++...+.++.+ + .+.+.++...+.++++++|.++. ...++++. ..++-.+..-+..+....
T Consensus 322 GNpva~Aaa~AvL~vi--e---~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdV-RG~Glm~giE~v~d~~t~------- 388 (447)
T COG0160 322 GNPVACAAALAVLDVI--E---EENLLERAAELGEYLRDRLEELQEKHPLIGDV-RGLGLMIGVELVKDRDTK------- 388 (447)
T ss_pred cCHHHHHHHHHHHHHH--H---HccHHHHHHHHHHHHHHHHHHHHhhcCceecc-cccceEEEEEEecCCCCC-------
Confidence 4444444344555543 2 33677888888888888886641 12234432 112222222232211000
Q ss_pred CCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 434 RNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 434 ~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
+...--...++..+.+ .|+.+-+ |+ ...+.+||.++...+++++|.++
T Consensus 389 ~p~~~~~~~i~~~~~~-~Glil~~---~G----------------------------~~~nviRi~PPL~is~e~~d~~l 436 (447)
T COG0160 389 EPDAELAAKIVARAFE-RGLLLLT---CG----------------------------PHGNVLRILPPLTISDEELDEGL 436 (447)
T ss_pred CCCHHHHHHHHHHHHH-cCCEEec---cC----------------------------CCCcEEEEeCCcccCHHHHHHHH
Confidence 0000113466777755 6876642 22 12488999999999999999999
Q ss_pred HHHHHHHHh
Q 043646 514 AALEFIAAY 522 (625)
Q Consensus 514 ~aL~~~~~~ 522 (625)
++|.+++.+
T Consensus 437 ~il~~al~~ 445 (447)
T COG0160 437 DILEEALKE 445 (447)
T ss_pred HHHHHHHHh
Confidence 999998765
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-13 Score=140.45 Aligned_cols=249 Identities=20% Similarity=0.191 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
.+.+..+..-+....|+++.|.+....-+. .|++|.-..+..+... ....+..|+++..-|+.+
T Consensus 104 isQG~Lq~lfe~Qs~i~eLTGmdvaNaSly--d~atA~aEa~~ma~r~--------------~~~~~~~vlv~~~~hP~~ 167 (429)
T PF02347_consen 104 ISQGRLQALFEYQSMICELTGMDVANASLY--DGATAAAEAMLMAVRA--------------TKRKRNKVLVPESLHPQT 167 (429)
T ss_dssp GBHHHHHHHHHHHHHHHHHHTSSEE-SEBS--SCCHHHHHHHHHHHHH--------------HTT---EEEEETTS-CHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccCCCCC--ChhHHHHHHHHHHHHh--------------cccCCcEEEEcCCcChhh
Confidence 466778888899999999999974312223 3555533333333211 112222599999999999
Q ss_pred HHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...++. .|.+++.++.++++..| . +++..|++.+|+ ..|.+.++++|++++|++|+++++ +
T Consensus 168 ~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~-----~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ 232 (429)
T PF02347_consen 168 RAVLRTYAAPLGIEIVEVPLDEDGTTD--------D-----DDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-G 232 (429)
T ss_dssp HHHHHHHCCHCCEEEEEE-BBTTCSB---------S-----TTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-C
T ss_pred HHHHHHhhhhCCeEEEEecccccCCcc--------c-----cCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-e
Confidence 876654 58899999988877766 2 689999999885 679999999999999999999987 6
Q ss_pred cCc--CCCccccCCCCCCCCCcEEEEcCCCCCCCCC-----CceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 271 AAS--GPYVKINLRSRNIDGYDAIFLATHKFLGGPG-----TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 271 A~~--~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-----g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
+.- .+... ...++ |+|+++.+ ||.||.|. +.|++.+++++ .+.++....| -+.+...........
T Consensus 233 ad~~aL~~l~-~Pge~---GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l--~r~lPGRiVG-~t~D~~G~~~~~ltL 304 (429)
T PF02347_consen 233 ADPNALGGLK-SPGEY---GADIVVGE-HQTFGIPMGFGGPGAGFFAVREDL--VRQLPGRIVG-QTKDADGKRAFVLTL 304 (429)
T ss_dssp GGCCGCCTC---GGGG---T-SEEEEC-CTTTT---CCC-S--EEEEE-GGG--GGGS-S-EEE-EEEBCCCSCCEEEE-
T ss_pred cCHHHHhCcC-Chhhc---CccEEeeC-CCCCcccCCCCCCCeeeEEEhhhh--hhhCCCceec-ccccccccceeeecc
Confidence 632 22111 11222 89999655 77775552 27999999998 4455443332 111110000011122
Q ss_pred cccchhhhhcCCChhHHH-----HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE
Q 043646 344 YLEDIEERENGGTPQIVQ-----MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~-----~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~ 402 (625)
+-+..+-|.+..|.|++. .+.+++-.......|+..+.++...++.|+.++|.++.++.
T Consensus 305 qtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~ 368 (429)
T PF02347_consen 305 QTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLP 368 (429)
T ss_dssp GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBEC
T ss_pred ccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 233334556666766641 12233323334667889999999999999999999874443
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-12 Score=142.32 Aligned_cols=364 Identities=12% Similarity=0.028 Sum_probs=198.9
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+. |...+.|.+++.+++......+... ...+...++.++|++++...-+
T Consensus 37 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~------~~~~~~~~la~~l~~~~p~~~~ 107 (442)
T PRK13360 37 GMYYTTHDG---RRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQ------MGHPKAFELANRIAEIAPGGLN 107 (442)
T ss_pred eeEEEeCCC---CEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCC------cCCHHHHHHHHHHHHhCCCCCC
Confidence 455666555 348997544 6778999999998886431111110 0123345677778887743333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcC------------CeEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSL------------AEVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G------------~~vv 206 (625)
.|.|+.+|+++.-.++-.++.... .-..+.+..|+. ....|.....++...| ..+.
T Consensus 108 -~v~f~~sGseA~e~AlklAr~~~~----------~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~ 176 (442)
T PRK13360 108 -HVFFTNSGSESVDTALKIALAYHR----------ARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVD 176 (442)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHHH----------hcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCE
Confidence 799998888873333322221000 001111223544 4445554433322111 1233
Q ss_pred EEecCCC---CCC----------CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDDN---GLL----------DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~~---~~l----------d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.+|.... ..+ .+++|++++... ..+++.+|++..+....|.+.| +++|.++|++||+++|+|
T Consensus 177 ~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~D 255 (442)
T PRK13360 177 HLPHTLDLARNAFSKGQPEHGAELADELERLVTLH-DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFD 255 (442)
T ss_pred EeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc-CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 3443211 000 245777777631 1246789999999999999988 999999999999999999
Q ss_pred ccC-cCCCcc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 270 FAA-SGPYVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 270 ~A~-~~g~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
+++ ++|-.. .-....+. .+|+++++ |.+++. ..+|.+++++++.+ .+......+.. ++
T Consensus 256 Ev~tG~GrtG~~~a~~~~gv-~PDivt~g--K~l~gG~~P~gav~~~~~i~~--~~~~~~~~~~~-------------~~ 317 (442)
T PRK13360 256 EVITGFGRLGAPFAAQYFGV-TPDLLTCA--KGLTNGAIPMGAVFVSSEIHD--AFMQGPEAGIE-------------FF 317 (442)
T ss_pred chhhCCCCCccchhhhhcCC-CCceeeee--eccccCccceEEEEEcHHHHH--HhhcCCccccc-------------cc
Confidence 998 444321 11111111 56888765 999642 22677888888732 21110000000 00
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 346 ~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
...-..|.|..++.+.++++.+ +.. .+.++.+++.+++++.|.++.....+.+. ...+....+.+.+...
T Consensus 318 ---~~~T~~g~pl~~aaa~a~L~~l--~~~---~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rG~Gl~~~~~l~~~~~- 387 (442)
T PRK13360 318 ---HGYTYSGHPLACAAALATLDLY--ERE---GLLTRAARLAPYWEDALHSLRDAPHVIDI-RNLGLVGAVELAPRDG- 387 (442)
T ss_pred ---cCCCCCCCHHHHHHHHHHHHHH--HhC---CHHHHHHHHHHHHHHHHHHhhcCCCeeee-eccceEEEEEEecCCC-
Confidence 0000123344444445566655 222 35567777777787777654211111111 0112222333322110
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS 505 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t 505 (625)
+..-....+...|.+ +||.++.+ ...+||++++.+|
T Consensus 388 ---------~~~~~~~~~~~~l~~-~Gvl~~~~----------------------------------~~~lr~~Ppl~~t 423 (442)
T PRK13360 388 ---------KPGKRAYEVFLKCFE-KGLMIRYT----------------------------------GDILALSPPLIIE 423 (442)
T ss_pred ---------CcchhHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEeCCCccC
Confidence 000113456666655 69988631 2569999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043646 506 NEEFEFILAALEFIAAY 522 (625)
Q Consensus 506 ~edid~ll~aL~~~~~~ 522 (625)
++|||+++++|++++.+
T Consensus 424 ~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 424 EAQIDELFDILAQALKE 440 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-12 Score=137.87 Aligned_cols=336 Identities=17% Similarity=0.113 Sum_probs=189.7
Q ss_pred ccccCCCCCCceEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..|+ -|+|.. ..|...+.|.+++.+++.... ..+.. ...+...++.+.|++..+. +
T Consensus 7 ~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~------~~~~~~~~la~~l~~~~~~---~ 73 (382)
T PLN00144 7 CKLYDVEGK---EYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLA-HVSNV------YHTIPQVELAKRLVASSFA---D 73 (382)
T ss_pred cEEEeCCCC---EEEECCcCHHhccCCCCCHHHHHHHHHHHHhcC-Ccccc------ccCHHHHHHHHHHHhcCCC---C
Confidence 445555453 488853 345568899999999886431 11110 0123345566667766542 3
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-C----ceEEEE-cCCCCchhHHHHHHcCC-----------
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-E----RWVVFL-GPYEHHSNLLSWRQSLA----------- 203 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d----~~~Vlv-~~~~h~s~~~~~~~~G~----------- 203 (625)
.|.|+.+|+++.-..+-.++.... +. ....+ + +..|+. ....|.....++...+-
T Consensus 74 ~v~f~~sGseA~e~AlklAr~~~~----~~----~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~ 145 (382)
T PLN00144 74 RVFFCNSGTEANEAAIKFARKYQR----VR----APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLM 145 (382)
T ss_pred eEEEeCCcHHHHHHHHHHHHHHHh----cc----CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence 899998899874433333321100 00 00010 0 223444 44555555444432221
Q ss_pred -eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCc
Q 043646 204 -EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYV 277 (625)
Q Consensus 204 -~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~ 277 (625)
.+..+|. -|+++|++.+.. +++++|+++..+|+.|...+ +++|.++|++||+++|+|+++.. +..
T Consensus 146 ~~~~~~~~-----~d~~~l~~~~~~----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~ 216 (382)
T PLN00144 146 PGVTFVEY-----GNLEAARKLIQK----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRT 216 (382)
T ss_pred CCeEEeCC-----CCHHHHHHhcCC----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence 1233332 278999988852 46888899888899666532 78999999999999999999763 222
Q ss_pred c--c--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 278 K--I--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 278 ~--i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
. . +.... .+|++++| |.+++...+|++++++++. +.+.+...+ .+ .
T Consensus 217 g~~~~~~~~~~---~PDi~t~s--K~l~~G~pig~v~~~~~~~--~~~~~~~~~-~T----------------------~ 266 (382)
T PLN00144 217 GYLWAHEAYGV---EPDIMTLA--KPLAGGLPIGAVLVTEKVA--SAINPGDHG-ST----------------------F 266 (382)
T ss_pred chHhhhhhcCC---CCCEEEec--ccccCCcceEEEEEcHHHH--hccCCCCCC-CC----------------------C
Confidence 1 1 12222 56866554 9997545589999998873 333221100 00 1
Q ss_pred CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----hCCCCcE-EEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 354 GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR----ILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~----L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
.+.|....++.+.++++ +. +.+.++.+.+.+++.+. +.+.|.+ .+-+ .+.++.+.+ ..
T Consensus 267 ~~~pl~~aaa~a~l~~i--~~---~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg-----~G~~~~l~l-~~------ 329 (382)
T PLN00144 267 AGGPLVCNAALAVLDKI--SK---PGFLASVAKKGEYLRELLRRKLGGNPHVKEVRG-----VGLLVGIQL-DV------ 329 (382)
T ss_pred CCCHHHHHHHHHHHHHH--hh---chHHHHHHHHHHHHHHHHHHHHhhCCCceeeec-----CceEEEEEe-cC------
Confidence 23333344445556665 22 23344444444444444 4444432 2222 223333333 21
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....+...+.+ +||.+.++. ....+|++++...+++|
T Consensus 330 ----------~~~~~~~~~~~-~Gv~i~~~~--------------------------------~~~~lrl~p~~~~~~~~ 366 (382)
T PLN00144 330 ----------PAGPLVDACRD-SGLLVLTAG--------------------------------KGDVVRLVPPLVISEAE 366 (382)
T ss_pred ----------ccHHHHHHHHH-CCeEEeecC--------------------------------CCCEEEEeCCCccCHHH
Confidence 13467777754 799987541 12679999998889999
Q ss_pred HHHHHHHHHHHHHh
Q 043646 509 FEFILAALEFIAAY 522 (625)
Q Consensus 509 id~ll~aL~~~~~~ 522 (625)
++.+++.|++++..
T Consensus 367 i~~~~~~l~~~l~~ 380 (382)
T PLN00144 367 LEQAVEILADCLPA 380 (382)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-12 Score=137.41 Aligned_cols=355 Identities=15% Similarity=0.071 Sum_probs=193.3
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ -|+|..+. |...+.|.+++.+++.... ..+.. ....+...++.++|++++.....
T Consensus 24 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~-~~~~~-----~~~~~~~~~la~~l~~~~p~~~~ 94 (420)
T TIGR00700 24 GAILEDVDGN---RLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFT-HTCFM-----VTPYEGYVALAEKLNRIAPGSGP 94 (420)
T ss_pred eeEEEeCCCC---EEEECccCHHhccCCCCCHHHHHHHHHHHHhcc-Ccccc-----ccCChHHHHHHHHHHHhCCCCCC
Confidence 4455555553 48886443 5667899999999885431 11110 01123344566777777753222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC--------C-----eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL--------A-----EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G--------~-----~vv 206 (625)
+.+.|+.+|+++.-.++-.++. . .|.+.+|......|.....++...| . .+.
T Consensus 95 ~~v~f~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (420)
T TIGR00700 95 KKSVFFNSGAEAVENAVKIARS--------------Y-TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVY 159 (420)
T ss_pred CEEEEeCCcHHHHHHHHHHHHH--------------h-cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcE
Confidence 3789998888874443333321 1 2222234445556655544443222 1 223
Q ss_pred EEecCCCCC-------C----CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEecc
Q 043646 207 EIGLDDNGL-------L----DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 207 ~v~~~~~~~-------l----d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A 271 (625)
.++...... . +++.+++.+......+++.+|++..+...+|.+.+ +++|.++|++||+++|+|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV 239 (420)
T TIGR00700 160 RAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEV 239 (420)
T ss_pred EeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 333321000 0 24566666642122357889999999999999877 88999999999999999999
Q ss_pred CcC-CCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 272 ASG-PYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 272 ~~~-g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+.. +... ......+. .+|++++ .|.+++...+|++++++++ .+.+.+... +.+
T Consensus 240 ~tg~gr~g~~~a~~~~~~-~pDi~~l--sK~l~~G~pig~v~~~~~i--~~~~~~~~~-~~T------------------ 295 (420)
T TIGR00700 240 QTGFARTGAMFACEHEGP-EPDLITT--AKSLADGLPLSGVTGRAEI--MDAPAPGGL-GGT------------------ 295 (420)
T ss_pred ccCCcccchhHHHhhcCC-CCCEEEe--eccccCCcceEEEEecHHH--HhhcCCCCc-CCC------------------
Confidence 653 2221 11111111 5687765 5999744458999999887 333322110 011
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC----CCCcEEEeCCCCCCCcceEEEEeccCCC
Q 043646 349 EERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL----PNQNIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 349 ~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~----~l~gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
..+.|....++.++++++ +.. .+.++...+.+++.+.|. .+|.+..+.+ .+.++.+.......
T Consensus 296 ----~~~~pl~~aaa~a~l~~l--~~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg----~G~~~~i~~~~~~~ 362 (420)
T TIGR00700 296 ----YAGNPLACAAALAVLAII--ESE---GLIERARQIGRLVTDRLTTLKAVDPRIGDVRG----LGAMIAVELVDPGT 362 (420)
T ss_pred ----CCcCHHHHHHHHHHHHHH--Hhc---cHHHHHHHHHHHHHHHHHHHHhhCCCEEEeec----cceEEEEEEecCCC
Confidence 112333333334455554 222 233444444444444443 3444433322 33444443322110
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
.. ........+.+.+. ++||.+.++..+ .+++||+++...
T Consensus 363 ~~--------~~~~~~~~l~~~~~-~~Gv~i~p~~~f-------------------------------~~~lRl~p~l~~ 402 (420)
T TIGR00700 363 TE--------PDAGLAERIATAAH-AAGLLLLTCGMF-------------------------------GNIIRFLPPLTI 402 (420)
T ss_pred CC--------ccHHHHHHHHHHHH-HCCeEEeccCCC-------------------------------CCEEEEECCCCc
Confidence 00 00001234454453 479999865322 268999998878
Q ss_pred CHHHHHHHHHHHHHHHH
Q 043646 505 SNEEFEFILAALEFIAA 521 (625)
Q Consensus 505 t~edid~ll~aL~~~~~ 521 (625)
+++++++++++|.+++.
T Consensus 403 ~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 403 GDELLSEGLDILCAILA 419 (420)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=140.87 Aligned_cols=352 Identities=14% Similarity=0.087 Sum_probs=198.3
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..++ |...+.|.+++.+++.+.. ..... ....+...++.+.+++.+...-+
T Consensus 35 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~-----~~~~~~~~~lae~L~~~~p~~~~ 105 (429)
T PRK06173 35 GVMITLKDG---RRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMS-HIMFG-----GFTHEPAVELAQKLLEILPPSLN 105 (429)
T ss_pred eeEEEcCCC---CEEEEccchHHhccCCCCCHHHHHHHHHHHHhcC-Ccccc-----ccCCHHHHHHHHHHHhhCCCCcC
Confidence 344555545 348886543 5677899999999886431 11110 11233445677778777753333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv 206 (625)
.|.|+.+|+++.-.++-.++... +. .-+++...+|......|.....++...| ..+.
T Consensus 106 -~v~f~~sGseAve~AlklAr~~~-----~~----~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~ 175 (429)
T PRK06173 106 -KIFFADSGSVAVEVAMKMALQYQ-----QA----KGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQY 175 (429)
T ss_pred -EEEEeCCchHHHHHHHHHHHHHH-----HH----hCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCe
Confidence 89999888887333322222100 00 0013333234444445554333322111 0122
Q ss_pred EEecCCC------CCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCcCC
Q 043646 207 EIGLDDN------GLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 207 ~v~~~~~------~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g 275 (625)
.+|.... ..-+++.|++.+.. ..+++.+|++... ....|.+.| +++|.++|++||+++|+|++|. |
T Consensus 176 ~~~~p~~~~~~~~~~~~l~~l~~~i~~--~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-G 252 (429)
T PRK06173 176 FLPQPSIKFGEEWNDEAIEPLQDLLEQ--KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIAT-G 252 (429)
T ss_pred EeCCCCcccchhHHHHHHHHHHHHHHh--CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhc-C
Confidence 3332110 01146667777763 2346789999885 777788754 7899999999999999999984 3
Q ss_pred Ccccc----CCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc----ccCCceEEeecccccccccccc
Q 043646 276 YVKIN----LRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS----TCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 276 ~~~id----~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~----~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
.-... ....+. .+|++++ .|.++|.. .+|.+++++++.+ .+.+. +..+.|
T Consensus 253 ~GrtG~~~a~~~~gv-~PDiv~~--gK~l~gG~~p~~a~~~~~~i~~--~~~~~~~~~~~~~~T---------------- 311 (429)
T PRK06173 253 FGRTGKLFALEHAGV-VPDIMCI--GKALTGGYLTLSATITTEAIAQ--TICSGEAKCFMHGPT---------------- 311 (429)
T ss_pred CCcCCcchHHHhcCC-CCCEEEe--ehhhhCCccccceEEecHHHHH--HHhcCCCCccccCCC----------------
Confidence 21111 111111 5788885 59986542 3678888887632 22110 000000
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCC
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
..|.|..++.+.++++++..+ .+.++.+++.+++.+.|+++.+...++.. ..++.++.+.+....
T Consensus 312 ------~~g~p~~~aaa~a~l~~i~~~-----~~~~~~~~~g~~l~~~L~~~~~~~~v~~v-Rg~Gl~~~iel~~~~--- 376 (429)
T PRK06173 312 ------FMANPLACAIAAESIRLLLES-----PWQQNIQRIEAQLKQELAPAAEFDSVAEV-RVLGAIGVVEMKEPV--- 376 (429)
T ss_pred ------CCcCHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhhcCCCeeee-eccceEEEEEeCCcc---
Confidence 123444455555666665322 34566677777777777643221111111 124556666553221
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
....+.+.|.+ .||.+++. ...+||.+++..|+
T Consensus 377 ------------~~~~i~~~l~e-~Gi~v~~~----------------------------------g~~l~~~Ppl~it~ 409 (429)
T PRK06173 377 ------------NMATLQPRFVE-HGIWVRPF----------------------------------GKLVYIMPPFIISP 409 (429)
T ss_pred ------------cHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEeCCccCCH
Confidence 23467787855 69998631 15799999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043646 507 EEFEFILAALEFIAAY 522 (625)
Q Consensus 507 edid~ll~aL~~~~~~ 522 (625)
+|+++++++|++++..
T Consensus 410 ~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 410 DELSQLTSGLLRVLKQ 425 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998865
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.6e-12 Score=135.49 Aligned_cols=356 Identities=15% Similarity=0.068 Sum_probs=198.3
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ -|+|..+ .|...+.|.+++.+++...... +.. ....+...++.++|++++.....
T Consensus 33 G~~l~D~dG~---~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~-~~~-----~~~~~~~~~lae~L~~~~p~~~~ 103 (445)
T PRK08593 33 GATLTDVDGK---TYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHY-TPA-----YMYHEPLVRLAKKLCELAPGDFE 103 (445)
T ss_pred eCEEEeCCCC---EEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCc-ccc-----ccCCHHHHHHHHHHHHhCCCCCC
Confidence 3445444453 4888633 4556789999999888542111 100 01234456677888888754322
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
+.|.|+.+|+.+.-..+-.++. . .|.+.+|.....+|.....++...+. .++
T Consensus 104 ~~v~f~~SGseA~e~AiklAr~--------------~-tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~ 168 (445)
T PRK08593 104 KRVTFGLSGSDANDGIIKFARA--------------Y-TGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFV 168 (445)
T ss_pred CEEEECCchHHHHHHHHHHHHH--------------h-hCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcE
Confidence 3799998888885554433331 1 22222344455566665544433221 233
Q ss_pred EEecCCC-----CCCCH-------HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 207 EIGLDDN-----GLLDI-------EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 207 ~v~~~~~-----~~ld~-------~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
.+|.... +..+. +++++.+.+....+++.+|++..+.+..|.+.| +++|.++|++||+++|+|+
T Consensus 169 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DE 248 (445)
T PRK08593 169 HIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDD 248 (445)
T ss_pred EeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 4443221 11112 334444432111246889999999999999877 8999999999999999999
Q ss_pred cCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
++. +|.... .....+. .+|+++++ |.+++...+|++++++++. +.+.+...+ .+
T Consensus 249 v~tg~GrtG~~~a~~~~gv-~pDi~t~g--K~l~~G~p~gav~~~~~i~--~~~~~~~~~-~T----------------- 305 (445)
T PRK08593 249 IQQGLGRTGKWSSISHFNI-TPDLMSFG--KSLAGGMPMSAIVGRKEIM--ESLEAPAHL-FT----------------- 305 (445)
T ss_pred hhhCCCcCchHHHHHhcCC-CCCEeeec--ccccCCcccEEEEEcHHHH--hhhccCCCC-CC-----------------
Confidence 974 432211 0111111 46877665 9887533478999998873 222111000 00
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
..+.|..++...++++.+ +. +.+.++.+.+.+++.+.|.+ .|.+.-+. ..+..+.+.+..+.
T Consensus 306 -----~~~~pl~~aaa~a~l~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr----G~Gl~~gi~l~~~~ 371 (445)
T PRK08593 306 -----TGANPVSCAAALATIDMI--ED---ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVR----GYGLSIGIDIVSDK 371 (445)
T ss_pred -----CCCCHHHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEe----ccceEEEEEEecCC
Confidence 123333333344555555 21 24556666666777776654 33221111 12333343332211
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY 503 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~ 503 (625)
... .........+...+.+ +||.+.+. ....+|+++++.
T Consensus 372 ~~~-------~~~~~~~~~~~~~~~~-~Gv~~~~~---------------------------------~~~~lr~~p~l~ 410 (445)
T PRK08593 372 KLK-------TRDNEAALKICNYCFE-HGVVIIAV---------------------------------AGNVLRFQPPLV 410 (445)
T ss_pred CcC-------CCcHHHHHHHHHHHHH-CCeEEecc---------------------------------CCCEEEEECCCc
Confidence 000 0000012356666655 79988531 126799999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 043646 504 MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 504 ~t~edid~ll~aL~~~~~~~ 523 (625)
+|++|++++++++++++.+.
T Consensus 411 ~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 411 ITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-13 Score=135.59 Aligned_cols=323 Identities=14% Similarity=0.133 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 118 RMTKMVHEASNYIKRCLGGGQA--DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~~--~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
+..++...+++.....++.+.. ..+++| +|.+.++..+.+.+ +++|| .|++..+++++.+
T Consensus 101 G~peLl~fik~h~~~~ih~p~~~~wdiiit-~G~t~~l~~~l~~~---------------~N~gd--~vlie~~ty~~AL 162 (472)
T KOG0634|consen 101 GIPELLLFIKDHNRPTIHAPPYKNWDIIIT-NGNTDGLFKVLRTL---------------INRGD--HVLIEEYTYPSAL 162 (472)
T ss_pred CcHHHHHHHHHhccccccCCCCCCceEEEe-cCCchHHHHHHHHh---------------hcCCC--ceEEecccchHHH
Confidence 3445444444433323333322 268888 78888888888877 57888 4999999999999
Q ss_pred HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhC----CCCe-EEEEecccCccccccCH---HHHHHHHHHcCCEEE
Q 043646 196 LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAA----KRPM-LGSFSACSNVTGIYSDT---RSIARLLHQYGGFAC 267 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~----~~~~-lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vi 267 (625)
.+++..|++++.|+.|.+| ++++.|++.+...+.. ++++ +..+...+||||...++ ++|.++|++|+++++
T Consensus 163 ~s~~a~gv~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIV 241 (472)
T KOG0634|consen 163 QSMEALGVKIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIV 241 (472)
T ss_pred HhccccCceEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEE
Confidence 9999999999888887765 6899999999753322 3454 77889999999999886 579999999999999
Q ss_pred EeccCcCCCcc-------c----------------cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCC
Q 043646 268 FDFAASGPYVK-------I----------------NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPP 323 (625)
Q Consensus 268 vD~A~~~g~~~-------i----------------d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p 323 (625)
.|+.+..-... . ++-.++.+|--+-.-|++|.++ |+ .+|++.+++.+ + ++
T Consensus 242 eDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~--l---~r 315 (472)
T KOG0634|consen 242 EDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLF--L---KR 315 (472)
T ss_pred ecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHH--H---HH
Confidence 99985532211 0 0011111222223348999997 55 59999998866 2 22
Q ss_pred cccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHhhCC-
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGY----EVIKKQEDVYIESALGRILP- 397 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~----~~i~~~~~~l~~~l~~~L~~- 397 (625)
....++.. ..+...+.+. +.+.+..|. +.|. ..++......+..+...|.+
T Consensus 316 il~~ae~~---------------------t~~pSg~sq~iv~a~l~~wg--qeG~~~wi~~l~~~Yt~Rrn~~l~Al~ky 372 (472)
T KOG0634|consen 316 ILDLAEVA---------------------TSGPSGFSQGIVYAMLKRWG--QEGFLRWIQHLRSSYTERRNALLSALDKY 372 (472)
T ss_pred Hhhhccee---------------------ecCcccccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222210 0111112222 233344442 2221 12222222234444444433
Q ss_pred CCc--EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC-hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 398 NQN--IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH-GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 398 l~g--v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~-~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
+|. +++..| .++.+.+.-.+-...+ ....++ -.++....+.++||.+..|..+.+....
T Consensus 373 lp~~~~~~~~P----~aGmFiwv~i~~~~~~-------~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~------- 434 (472)
T KOG0634|consen 373 LPKSVCEYHPP----KAGMFIWVEIPYINFD-------TKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPES------- 434 (472)
T ss_pred CCCCeeEEecC----CcceEEEEEecccccc-------cccchHHHHHHHHHHHHHCCeEEecCceeEEcCcc-------
Confidence 343 455555 4577666655411000 112233 3455555556799999999887632111
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ .+-++|+++.+. ..++++..++.+..++.+
T Consensus 435 --------------s~-~kiffRls~a~a-~~e~l~~g~~rf~~~ike 466 (472)
T KOG0634|consen 435 --------------SW-SKIFFRLSIAFA-EPEKLDEGIERFGSVIKE 466 (472)
T ss_pred --------------CC-CcceEEEEeecC-CHHHHHHHHHHHHHHHHH
Confidence 00 124899999754 567888877777776655
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-12 Score=136.45 Aligned_cols=355 Identities=14% Similarity=0.120 Sum_probs=196.2
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..|+ -|+|..+. |...+.|.+++.+++... ...+.. ....+...++.+.+++++.....
T Consensus 31 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~~-----~~~~~~~~~la~~l~~~~p~~~~ 101 (421)
T PRK09792 31 NATLKDVEGN---EYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQF-THTAYQ-----IVPYESYVTLAEKINALAPVSGQ 101 (421)
T ss_pred ccEEEeCCCC---EEEEccCchhhhcCCCCCHHHHHHHHHHHHhc-cCcccC-----ccCCHHHHHHHHHHHHhCCCCCC
Confidence 3455555553 48887443 567889999999888542 111110 01123344566777777653222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
+.+.|+.||+.+.-.++-.++. . .|...+|......|.....++...|. .+.
T Consensus 102 ~~~~f~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~ 166 (421)
T PRK09792 102 AKTAFFTTGAEAVENAVKIARA--------------H-TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVY 166 (421)
T ss_pred ceEEEeCChHHHHHHHHHHHHH--------------h-cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcE
Confidence 3788888888874444433331 1 22222344444555554433332221 133
Q ss_pred EEecCC--CCC---CCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc-C---HHHHHHHHHHcCCEEEEeccCcC-CC
Q 043646 207 EIGLDD--NGL---LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS-D---TRSIARLLHQYGGFACFDFAASG-PY 276 (625)
Q Consensus 207 ~v~~~~--~~~---ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~-~---l~~I~~la~~~g~~vivD~A~~~-g~ 276 (625)
.+|... ++. -+++.+++.+.+....+++.+|+++.+++++|... | +++|.++|++||+++|+|+++.. +.
T Consensus 167 ~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr 246 (421)
T PRK09792 167 HVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFAR 246 (421)
T ss_pred EcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC
Confidence 344322 111 13467777776311124688999999999999875 5 88999999999999999999663 22
Q ss_pred cc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
.. .....++ ..+|++++ .|.+++...+|++++++++. +.+.+... +.+ ..
T Consensus 247 ~G~~~a~~~~~-~~pDi~t~--gK~l~~G~pigav~~~~~i~--~~~~~~~~-~~T----------------------~~ 298 (421)
T PRK09792 247 TGKLFAMDHYA-DKPDLMTM--AKSLAGGMPLSGVVGNANIM--DAPAPGGL-GGT----------------------YA 298 (421)
T ss_pred CCchhHHHhcC-CCCcEEEe--ehhhcCCCceEEEEEcHHHH--hccCCCCc-CCC----------------------CC
Confidence 21 1111111 25787655 59997545589999988873 23221110 011 12
Q ss_pred CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccc
Q 043646 355 GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENM 430 (625)
Q Consensus 355 gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~ 430 (625)
|.|.......+.++++. . +.+.++.+.+.+++.+.|.. .|.+. .. ..++.++.+.+..+...
T Consensus 299 gnpl~~aaa~a~l~~l~--~---~~~~~~~~~~g~~l~~~l~~l~~~~p~v~--~v--rG~Gl~~~ie~~~~~~~----- 364 (421)
T PRK09792 299 GNPLAVAAAHAVLNIID--K---ESLCERANQLGQRLKNTLIDAKESVPAIA--AV--RGLGSMIAAEFNDPQTG----- 364 (421)
T ss_pred CCHHHHHHHHHHHHHHH--h---hhHHHHHHHHHHHHHHHHHHHHHhCCCcc--ee--cccceEEEEEecCCccC-----
Confidence 33333333345555552 1 23445555666666665543 34321 11 11233444433221100
Q ss_pred cccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 431 KIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 431 ~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
.........+...+.+ +||.+.+ ++ + .++.+|+.+++..+++|++
T Consensus 365 ---~~~~~~~~~l~~~~~~-~Gv~i~~---~g-~---------------------------~~~~irl~P~l~i~~~ei~ 409 (421)
T PRK09792 365 ---EPSAAIAQKIQQRALA-QGLLLLT---CG-A---------------------------YGNVIRFLYPLTIPDAQFD 409 (421)
T ss_pred ---CcchHHHHHHHHHHHH-CCcEEee---cC-C---------------------------CCCEEEEeCCCcCCHHHHH
Confidence 0000113456666655 7998852 11 0 1378999999989999999
Q ss_pred HHHHHHHHHHH
Q 043646 511 FILAALEFIAA 521 (625)
Q Consensus 511 ~ll~aL~~~~~ 521 (625)
+++++|.+++.
T Consensus 410 ~~~~~l~~~l~ 420 (421)
T PRK09792 410 AAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.2e-12 Score=137.15 Aligned_cols=359 Identities=15% Similarity=0.065 Sum_probs=194.0
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..| .-|+|..+ .|...+.|.+++.+++... ..... .....+...++.+++++.+.....
T Consensus 47 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~~~-----~~~~~~~~~~la~~l~~~~p~~~~ 117 (443)
T PRK06058 47 GGIVEDVDG---NRLIDLGSGIAVTSVGNSAPRVVEAVREQVARF-THTCF-----MVTPYEGYVAVAEQLNRLTPGDHE 117 (443)
T ss_pred eeEEEeCCC---CEEEEcCcchhhhccCCCCHHHHHHHHHHHHhc-cCccc-----cccCCHHHHHHHHHHHHhCCCCCC
Confidence 344555545 34888644 4566889999999988642 11111 011234455677788887754322
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
+.+.|+.+|+.+.-..+-.++. . .|...+|.....+|.....++...+. .+.
T Consensus 118 ~~v~f~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~ 182 (443)
T PRK06058 118 KRSALFNSGAEAVENAVKIARS--------------Y-TGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVY 182 (443)
T ss_pred CEEEEeCCcHHHHHHHHHHHHH--------------h-hCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCce
Confidence 3788888898874444332321 1 12222344444555555444332221 122
Q ss_pred EEecCCCCC------CCH-HHHHHHH---HHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccC
Q 043646 207 EIGLDDNGL------LDI-EALRSQL---ELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAA 272 (625)
Q Consensus 207 ~v~~~~~~~------ld~-~~L~~~l---~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~ 272 (625)
.+|...... .+. +.+++.+ .+....+++.+|++.......|.+.| +++|.++|++||+++|+|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~ 262 (443)
T PRK06058 183 RAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQ 262 (443)
T ss_pred EcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 333211100 011 1122211 11111246788888887777777765 899999999999999999997
Q ss_pred c-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 273 S-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 273 ~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
. +|-.. .-....+. .+|+++++ |.+++...+|++++++++ .+.+.+... ++|
T Consensus 263 tGfgRtG~~fa~~~~gv-~PDiv~~g--K~l~~G~Pi~av~~~~~i--~~~~~~~~~-~~T------------------- 317 (443)
T PRK06058 263 TGFARTGAWFACEHEGI-VPDLITTA--KGIAGGLPLSAVTGRAEI--MDAPHPGGL-GGT------------------- 317 (443)
T ss_pred cCCCcChhhhHHHhcCC-CCCEEEEc--ccccCCCccEEEEEcHHH--HhhccCCCC-CCC-------------------
Confidence 5 22111 00111111 56999886 999754458999999887 333322111 111
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
..|.|-.++++.++++.+ + .+.+.++...+.+++.+.|+++. ...+++.. ..++.++.+.+..+....
T Consensus 318 ---~~gnpl~~aaa~a~L~~~--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~~i~~~~~~~~~-- 386 (443)
T PRK06058 318 ---YGGNPVACAAALAAIETI--E---EDDLVARARQIEALMTDRLRALAAEDDRIGDV-RGRGAMIAIELVKPGTTE-- 386 (443)
T ss_pred ---CCCCHHHHHHHHHHHHHH--H---HcCHHHHHHHHHHHHHHHHHHHHhhCCcEEee-eccceEEEEEEecCCCCC--
Confidence 123333333334455544 2 22456666777777777775531 11111111 124455555553321000
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
...-....+.+.+.+ +||.+.++..+ ++++|+.+++.+|++|
T Consensus 387 ------~~~~~~~~l~~~~~~-~Gv~~~~~~~~-------------------------------~~~lr~~Ppl~~t~~~ 428 (443)
T PRK06058 387 ------PDAELTKALAAAAHA-AGVIVLTCGTY-------------------------------GNVIRLLPPLVIGDEL 428 (443)
T ss_pred ------CcHHHHHHHHHHHHH-CCeEEeccCCC-------------------------------CCEEEEECCCccCHHH
Confidence 000002345555544 79998753211 2689999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043646 509 FEFILAALEFIAAY 522 (625)
Q Consensus 509 id~ll~aL~~~~~~ 522 (625)
+++++++|++++.+
T Consensus 429 i~~~~~~l~~~l~~ 442 (443)
T PRK06058 429 LREGLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-11 Score=135.33 Aligned_cols=361 Identities=14% Similarity=0.028 Sum_probs=199.2
Q ss_pred CCccccCCCCCCceEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 65 NDVEFDYSFGKRRLTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 65 ~~~~~~~p~g~~~~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
.+..+++..|+ .|+|.. ..|...+.|.+++.+++........ ......+...++.++|+++++..-
T Consensus 44 ~G~~l~D~dG~---~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~-----~~~~~~~~~~~lae~L~~~~p~~~ 115 (460)
T PRK12403 44 EGLHLWDNDGK---RYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNM-----FFHTTHPAVIELSELLFSLLPGHY 115 (460)
T ss_pred eeeEEEeCCCC---EEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeec-----ccccCCHHHHHHHHHHHHhCCCCc
Confidence 34556655553 488843 3456778999999998865321100 000123456678888888886433
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcCCe-----------EE
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSLAE-----------VV 206 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~~-----------vv 206 (625)
+ .++|+.+|++++..++-.++.... .. =+++.. +|+. ...+|.+...++...|.+ +.
T Consensus 116 ~-~v~f~~SGseA~e~AiklAr~~~~--------~~-g~~~r~-~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~ 184 (460)
T PRK12403 116 S-HAIYTNSGSEANEVLIRTVRRYWQ--------VL-GKPQKK-IMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVA 184 (460)
T ss_pred C-EEEEeCCcHHHHHHHHHHHHHHHH--------hh-CCCCCc-EEEEECCCcCcccHhhhhcCCCccccccCCCCCCCE
Confidence 3 788888898885544433321000 00 012222 3333 345677766665544432 23
Q ss_pred EEecCCC----CCC--------CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 207 EIGLDDN----GLL--------DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 207 ~v~~~~~----~~l--------d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
.+|.... ..+ ++++|++.+.+ ...+++.+|++..+....|.+.| +++|.++|++||+++|+|+
T Consensus 185 ~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~-~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DE 263 (460)
T PRK12403 185 HIDEPYWYANGGELTPAEFGRRAALQLEEKILE-LGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADE 263 (460)
T ss_pred EeCCCcccccccCCChHHHHHHHHHHHHHHHHH-hCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 3332110 011 13456665542 11246788999999988899888 9999999999999999999
Q ss_pred cCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc---ccCCceEEeeccccccccc
Q 043646 271 AAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS---TCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 271 A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~---~~ggg~v~~~~~~~~~~~~ 343 (625)
++. +|-... .....+. .+|+++++ |.+++.. .+|++++++++.+ .+.+. +..++|
T Consensus 264 V~tGfGRtG~~~a~e~~gv-~PDiv~~g--K~lggG~~Piga~v~~~~i~~--~~~~~~~~~~~~~T------------- 325 (460)
T PRK12403 264 VIGGFGRTGEWFAHEHFGF-EPDTLSIA--KGLTSGYVPMGGLVLSKRIAE--ALVEQGGVFAHGLT------------- 325 (460)
T ss_pred cccCCCcCchhhhhhhcCC-CCCeEEEc--ccccccccceEEEEECHHHHH--HHhcCCCccccCCC-------------
Confidence 985 221111 1111112 46999865 9997543 4688888877732 22110 000011
Q ss_pred cccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHhhC----CCCcEEEeCCCCCCCcceEEEE
Q 043646 344 YLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED-VYIESALGRIL----PNQNIQVLGNTSVKRQAILSFL 418 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~-~l~~~l~~~L~----~l~gv~v~~~~~~~~~~i~~f~ 418 (625)
..|.|..++.+.++++.+ +.. .+.++.+ .+.+++.+.|+ +.+.+.-+ ...+..+.+.
T Consensus 326 ---------~~gnPl~~Aaala~L~~i--~~~---~l~~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rG~Gl~~gie 387 (460)
T PRK12403 326 ---------YSGHPVAAAVAIANLKAL--RDE---GVVTRVKDDTGPYLQRCLREVFGDHPLVGEV----QGAGLVAALQ 387 (460)
T ss_pred ---------CCCCHHHHHHHHHHHHHH--Hhc---cHHHHHHHHHHHHHHHHHHHHHhcCCCEEeE----eecceEEEEE
Confidence 123444455555666665 222 2344443 45555555554 33322211 1133445554
Q ss_pred eccCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCC
Q 043646 419 VYSTTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKP 493 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~ 493 (625)
+..+.. ...... ...+...+.+ .||.+++. .
T Consensus 388 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~----------------------------------~ 423 (460)
T PRK12403 388 FAEDKA---------TRKRFANENDLAWRCRTIGFE-EGVIIRST----------------------------------L 423 (460)
T ss_pred EccCcc---------ccccccchhHHHHHHHHHHHh-CCEEEEec----------------------------------C
Confidence 432210 000110 1223344444 68888621 1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 494 GWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 494 g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+.+|+++++..|++|+|++++++++++.+..+
T Consensus 424 ~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 424 GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999987644
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-11 Score=133.72 Aligned_cols=356 Identities=15% Similarity=0.132 Sum_probs=196.0
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..|+ -|+|..+. |..++.|.+++.+++......... ....+...++.+++++.+.....
T Consensus 31 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~------~~~~~~~~~la~~l~~~~p~~~~ 101 (425)
T PRK07495 31 NAEIWDKEGR---RYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQ------VVPYENYVRLAERLNALVPGDFA 101 (425)
T ss_pred ecEEEeCCCC---EEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccC------ccCCHHHHHHHHHHHHhCCCCCC
Confidence 4556665553 48886443 667889999999988643211110 11233455577778777754322
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv 206 (625)
+.+.|+.+|+.+.-..+-.++. . .|...+|.....+|.....++...| ..++
T Consensus 102 ~~v~f~~SGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (425)
T PRK07495 102 KKTIFVTTGAEAVENAVKIARA--------------A-TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVY 166 (425)
T ss_pred CEEEECCchHHHHHHHHHHHHH--------------h-hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeE
Confidence 3799998888874444333331 1 2222234444555555433322111 1234
Q ss_pred EEecCCC-CCCC----HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CC
Q 043646 207 EIGLDDN-GLLD----IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PY 276 (625)
Q Consensus 207 ~v~~~~~-~~ld----~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~ 276 (625)
.+|.+.. ..++ ++++++.+......+++.+|++..+...+|.+.+ +++|.++|++||+++|+|+++.. |.
T Consensus 167 ~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr 246 (425)
T PRK07495 167 HVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFAR 246 (425)
T ss_pred EecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCc
Confidence 4554321 1122 4455666642112246888889888877886643 78999999999999999999762 22
Q ss_pred cc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC
Q 043646 277 VK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG 354 (625)
Q Consensus 277 ~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~ 354 (625)
.. ......+. .+|+++++ |.+++...+|++++++++. +.+.+...+ .+ ..
T Consensus 247 ~G~~~a~~~~gv-~pDi~tls--K~l~~G~pigav~~~~~i~--~~~~~~~~~-~T----------------------~~ 298 (425)
T PRK07495 247 TGKLFAMEHHEV-AADLTTMA--KGLAGGFPLAAVTGRAEIM--DAPGPGGLG-GT----------------------YG 298 (425)
T ss_pred CCCceeecccCC-CCCEEeeh--hhhcCCccceEEEEcHHHH--hccCCCCcC-CC----------------------CC
Confidence 21 01111111 46776665 9997544579999988873 333221100 00 12
Q ss_pred CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcE-EEeCCCCCCCcceEEEEeccCCCCCCcc
Q 043646 355 GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNI-QVLGNTSVKRQAILSFLVYSTTNSSPEN 429 (625)
Q Consensus 355 gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~ 429 (625)
+.|.......++++++ +. +.+.++.+.+.+++.+.|++ .|.+ .+-+ ++-.+.+.+.++....
T Consensus 299 ~~pl~~aaa~a~l~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG-----~Gl~~~iel~~~~~~~--- 365 (425)
T PRK07495 299 GNPLGIAAAHAVLDVI--EE---EDLCERANQLGNRLKQRLASLRETVPEIADIRG-----PGFMNAVEFNDADSGL--- 365 (425)
T ss_pred CCHHHHHHHHHHHHHH--Hh---chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeec-----CceEEEEEEecCCCCC---
Confidence 3333334344556665 21 24555666666666666644 3332 2222 2233333332211000
Q ss_pred ccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 430 ~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
....+ ...+.+.+.+ +|+.++.. + + ..+.+||.+++..|++|+
T Consensus 366 ----~~~~~-~~~~~~~~~~-~Gvl~~~~---g-~---------------------------~~~~~r~~Ppl~it~~~i 408 (425)
T PRK07495 366 ----PSAEF-ANRVRLKALE-KGLILLTC---G-V---------------------------HGNVIRFLAPITIQDDVF 408 (425)
T ss_pred ----ccHHH-HHHHHHHHHH-CCeEEeec---C-C---------------------------CCCEEEEeCCCccCHHHH
Confidence 00000 2346666655 79988531 1 0 136799999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043646 510 EFILAALEFIAAYG 523 (625)
Q Consensus 510 d~ll~aL~~~~~~~ 523 (625)
|+++++|++++.+.
T Consensus 409 d~~~~~l~~~l~~~ 422 (425)
T PRK07495 409 AEALDILEASILEA 422 (425)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-11 Score=135.31 Aligned_cols=350 Identities=15% Similarity=0.054 Sum_probs=197.7
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| ..|+|..+ .|...+.|.+++.+++...... +. ....+...++.++|++++....+
T Consensus 44 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~~------~~~~~~~~~lae~L~~~~p~~~~ 113 (451)
T PRK06062 44 GSYVWDYEG---RRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTV-AP------AHANDARSEAARLIAERAPGDLS 113 (451)
T ss_pred eeEEEECCC---CEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCc-CC------ccCCHHHHHHHHHHHHhCCCCCC
Confidence 344555444 35888644 3567789999999988542111 11 01234455677778887754333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------eEEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-----------EVVEI 208 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv~v 208 (625)
.|.|+.||+.+.-.++-.++. . .|...+|.....+|.....++...|. .+..+
T Consensus 114 -~v~f~~SGsEAve~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 177 (451)
T PRK06062 114 -KVFFTNGGADANEHAVRMARL--------------H-TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHF 177 (451)
T ss_pred -EEEEcCChHHHHHHHHHHHHH--------------h-hCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEe
Confidence 899998888874444333331 1 22222344444555555444433221 12222
Q ss_pred ecCCCCC------CC-------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEecc
Q 043646 209 GLDDNGL------LD-------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 209 ~~~~~~~------ld-------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A 271 (625)
+...... -| +++|++++.. ...+++.+|++..+....|.+.| +++|.++|++||+++|+|++
T Consensus 178 ~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV 256 (451)
T PRK06062 178 FGPFLYRSEFHATTEEEECERALAHLERVIEL-EGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEV 256 (451)
T ss_pred CCCCccccccCCCChHHHHHHHHHHHHHHHHh-cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecc
Confidence 2211110 12 5777887753 11246789999999988999988 99999999999999999999
Q ss_pred CcC-CCccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc-ccCCceEEeecccccccccccc
Q 043646 272 ASG-PYVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS-TCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 272 ~~~-g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~-~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
+.. |-... -....+. .+|+++++ |.+++.. .+|++++++++. +.+.+. +..+.|
T Consensus 257 ~tGfGRtG~~~a~~~~gv-~PDi~t~g--K~lggG~~Pigav~~~~~i~--~~~~~~~~~~~~T---------------- 315 (451)
T PRK06062 257 MAGFGRTGKWFAIEHFGV-VPDLITFA--KGVNSGYVPLGGVAISEAIA--ATFADRPYPGGLT---------------- 315 (451)
T ss_pred ccCCCcCcHHHHHHhcCC-CCCeeeec--hhhhcCCcCcEEEEEcHHHH--HHhccCCCCCCCC----------------
Confidence 773 21110 0111112 57988776 9997632 368888888873 222111 011111
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHhhCC----CCcE-EEeCCCCCCCcceEEEEec
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI-ESALGRILP----NQNI-QVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~-~~l~~~L~~----l~gv-~v~~~~~~~~~~i~~f~~~ 420 (625)
..|.|..++...++++.+. .. .+.++...+. +++.+.|++ .|.+ .+-+ .+.++.+.+.
T Consensus 316 ------~~gnpl~~Aaa~a~L~~l~--~~---~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG-----~Gl~~gve~~ 379 (451)
T PRK06062 316 ------YSGHPLACAAAVATINAME--EE---GIVENAARIGAEVLGPGLRELAERHPSVGEVRG-----LGVFWALELV 379 (451)
T ss_pred ------CCCCHHHHHHHHHHHHHHH--hc---CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEec-----cccEEEEEEc
Confidence 1234444444456666652 22 3445555554 355555443 3332 2221 3344444443
Q ss_pred cCCCCCCccccccCCCCC--------ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 421 STTNSSPENMKIERNKPL--------HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l--------~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
.+.. ...++ ....+.+.|.+ +||.+...
T Consensus 380 ~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~---------------------------------- 415 (451)
T PRK06062 380 ADRE---------TREPLAPYGASSAAMAAVKAACKE-RGLLPFVN---------------------------------- 415 (451)
T ss_pred cccc---------ccCCCcccchhhHHHHHHHHHHHH-CCcEEeec----------------------------------
Confidence 2110 00111 12356666654 69887521
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+.+|+++++.+|++|+|++++++++++...
T Consensus 416 ~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 416 GNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 2679999999999999999999999988664
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-12 Score=139.31 Aligned_cols=337 Identities=15% Similarity=0.095 Sum_probs=181.8
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+ .|..++.|.+++.+++.... +.. .......+++++|++.+... + .|+|+.+|+.+
T Consensus 48 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~------~~~~~~~~lae~l~~~~~~~-~-~v~~~~sGseA 116 (423)
T TIGR00713 48 NEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT---SYG------APTEAEILLAKEIISRVPSV-E-MVRFVNSGTEA 116 (423)
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhCC---cCC------CCCHHHHHHHHHHHHhCCcc-c-EEEEeCCHHHH
Confidence 35888643 34678999999999885421 110 11234566888888887643 3 79999777777
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH-HHHH--cCCe-----------------EEEEecC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL-SWRQ--SLAE-----------------VVEIGLD 211 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~--~G~~-----------------vv~v~~~ 211 (625)
....+-.++. ....+ .|+.....|+.... .+.. .|.. +..++
T Consensus 117 ~e~Alk~ar~--------------~~gr~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (423)
T TIGR00713 117 TMSAVRLARG--------------YTGRD--KIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLP-- 178 (423)
T ss_pred HHHHHHHHHH--------------hhCCC--EEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeC--
Confidence 4443333321 11223 35555544444322 2211 1111 11122
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcccc--CCCCC
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKIN--LRSRN 285 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id--~~~~~ 285 (625)
..|+++|++++++. .+++++|++....+.+|.+.| +++|.++|++||+++|+|+++..-..... ....+
T Consensus 179 ---~~d~~~l~~~i~~~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~ 253 (423)
T TIGR00713 179 ---YNDLEALEEVFEEY--GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFG 253 (423)
T ss_pred ---CCCHHHHHHHHHHc--CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhC
Confidence 12789999998732 246788888655555898877 68999999999999999999753211000 00111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIR 364 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~ 364 (625)
. .+|++ ++.|.+++...+|++++++++. +.+.+. +... .... .+.|.....+.
T Consensus 254 ~-~pDi~--t~sK~l~~G~pig~v~~~~~i~--~~~~~~---~~~~------------------~~~T~~~~~~~~aaa~ 307 (423)
T TIGR00713 254 V-EPDLT--TLGKIIGGGLPVGAFGGRREIM--ERLAPE---GPVY------------------QAGTLSGNPLAMAAGL 307 (423)
T ss_pred C-Ccchh--hhhhhhcCCCceeeeeEHHHHH--HhhCcC---CCee------------------eccCCCCCHHHHHHHH
Confidence 1 45765 4679997433479999998873 333210 0000 0001 12233333334
Q ss_pred HHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC---
Q 043646 365 AALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH--- 439 (625)
Q Consensus 365 aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~--- 439 (625)
++++.+ +..+ .+.+.+....+.+.+.+.+.+.+-+ .+.+ .+.++.+.+..+...+ . ......+
T Consensus 308 a~l~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~-----~g~~~~v~~~~~~~~~---~--~~~~~~~~~~ 375 (423)
T TIGR00713 308 ATLKLL--DEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNR-----VGSMFSLFFTEEEVTN---Y--ADAKKSDTEL 375 (423)
T ss_pred HHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----eccEEEEEEecCCCCC---h--hhhhcccHHH
Confidence 555554 2222 3344444444555555555554221 1222 2344544332211000 0 0000011
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+++.|.+ +||.+.++. .+.+|+++. +|++|+++++++|+++
T Consensus 376 ~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~l~~~--~t~~~i~~~~~~l~~~ 419 (423)
T TIGR00713 376 FAKFFHEMLD-KGVFLPPSQ---------------------------------FEACFLSAA--HTEEDIENTIEAAEEV 419 (423)
T ss_pred HHHHHHHHHH-CCeEEecCC---------------------------------ccceeeECC--CCHHHHHHHHHHHHHH
Confidence 1246667765 799986321 145788875 6999999999999988
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 420 l~~ 422 (423)
T TIGR00713 420 FAE 422 (423)
T ss_pred Hhh
Confidence 754
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=133.76 Aligned_cols=358 Identities=15% Similarity=0.131 Sum_probs=190.6
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..|+ -|+|..+. |...+.|.+++.+++.... +... .....+...++.++|++++.....
T Consensus 45 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~---~~~~~~~~~~la~~L~~~~p~~~~ 115 (451)
T PRK06918 45 GALVTDVDGN---QYIDFAGAIGTINVGHSHPKVKEALHKQVDQYI---HTGF---NVMMYEPYIELAEKLAALAPGSFD 115 (451)
T ss_pred ccEEEeCCCC---EEEEcCCchhhcCCCCCCHHHHHHHHHHHHhcc---Cccc---cccccHHHHHHHHHHHHhCCCCCC
Confidence 3445555453 48886433 5678899999999886431 1100 001234456677888888764332
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
+.+.|+.+|+.+.-.++-.++. . .|.+.+|.....+|.....++...+- .+.
T Consensus 116 ~~v~f~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~ 180 (451)
T PRK06918 116 KKVLFLNSGAEAVENAVKIARK--------------Y-TKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVY 180 (451)
T ss_pred CEEEEcCCcHHHHHHHHHHHHH--------------H-hCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcE
Confidence 3799998888874443332321 1 12222344444555555434332221 123
Q ss_pred EEecCC-----CCCCC-------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 207 EIGLDD-----NGLLD-------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 207 ~v~~~~-----~~~ld-------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
.+|... .+... ++.+++.+......+++.+|++..+....|.+.| +++|.++|++||+++|+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DE 260 (451)
T PRK06918 181 KAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADE 260 (451)
T ss_pred EcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 333221 11100 1234443321112246778888877777787655 7889999999999999999
Q ss_pred cCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
++. ++... ..+..++. .+|+++ +.|.+++...+|++++++++. +.+.+... +.+
T Consensus 261 V~tg~gr~g~~~a~~~~~v-~pDi~t--~sK~l~~G~pig~v~~~~~i~--~~~~~~~~-~~T----------------- 317 (451)
T PRK06918 261 IQTGFARTGKYFAIEHFDV-VPDLIT--VSKSLGAGVPISGVIGRKEIM--DESAPGEL-GGT----------------- 317 (451)
T ss_pred cccCcCccCceehhHhcCC-CCCEEe--eehhhcCCCccEEEEEcHHHH--hccCCCCc-CcC-----------------
Confidence 965 33221 11222211 368665 559997444589999998873 33322110 011
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
..|.|....+..++++++ +. +.+.++.+.+.+++.++|+++ +.+.-+. ..+.++.+....+.
T Consensus 318 -----~~g~~l~~aaa~a~l~~i--~~---~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vr----g~G~~~~~~~~~~~ 383 (451)
T PRK06918 318 -----YAGSPLGCAAALAVLDII--EK---ENLNDRAIELGKVVMNRFEEMKNKYNCIGDVR----GLGAMCAFELVQDR 383 (451)
T ss_pred -----CCcCHHHHHHHHHHHHHH--HH---CCHHHHHHHHHHHHHHHHHHHHhhCCCceeec----cceeEEEEEEccCC
Confidence 012233333334455554 22 234445555556666655443 3221121 13445444443111
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY 503 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~ 503 (625)
... .........+.+.+.+ +||.+.++..+ .+++|+++++.
T Consensus 384 ~~~-------~~~~~~~~~l~~~~~~-~Gvlv~~~~~~-------------------------------~~~lrl~p~l~ 424 (451)
T PRK06918 384 KTK-------EPDKTLTANICKEANK-RGLLLLSAGTY-------------------------------GNVIRVLMPLV 424 (451)
T ss_pred CcC-------CCcHHHHHHHHHHHHH-CCeEEeecCCC-------------------------------CCEEEEECCCc
Confidence 000 0000012345555544 79999764322 26799999888
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 043646 504 MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 504 ~t~edid~ll~aL~~~~~~~ 523 (625)
.++++++.++++|++++...
T Consensus 425 ~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 425 ITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988654
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-11 Score=133.47 Aligned_cols=354 Identities=15% Similarity=0.099 Sum_probs=195.5
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..| .-|+|..+. |...+.|.+++.+++.... ..... ....+...++.++|.+.+..+..
T Consensus 45 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~~-----~~~~~~~~~lAe~L~~~~p~~~~ 115 (441)
T PRK05769 45 GVWVEDVDG---NVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFL-HYSLT-----DFYYEPAVELAERLVEIAPGGFE 115 (441)
T ss_pred eEEEEeCCC---CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc-CccCc-----ccCCHHHHHHHHHHHHhCCCCCC
Confidence 344555445 348886443 4456899999999885421 11100 01123456677888887753222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
+.|.|+.+|+.+.-.++-.++. . .|.+.+|.....+|.....++...|. .+.
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~--------------~-tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~ 180 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARY--------------H-TGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVI 180 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHH--------------H-hCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeE
Confidence 3899998888885544433331 1 22222333444555555444432221 233
Q ss_pred EEecCCCCC-----C--------CHHHHHHHH-HHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEE
Q 043646 207 EIGLDDNGL-----L--------DIEALRSQL-ELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 207 ~v~~~~~~~-----l--------d~~~L~~~l-~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
.++...... - +++.+++.+ +.....+++.+|++..+....|.+.| +++|.++|++||+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~ 260 (441)
T PRK05769 181 HVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLID 260 (441)
T ss_pred EeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344321100 0 123355523 21012356889999999999999988 99999999999999999
Q ss_pred eccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 269 DFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 269 D~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
|+++. +|... .....++. .+|+++++ |.+++...+|++++++++. ... +.. .+.+
T Consensus 261 DEv~tG~gr~G~~~a~~~~gv-~pDivt~~--K~l~~G~p~gav~~~~~i~--~~~-~~~-~~~T--------------- 318 (441)
T PRK05769 261 DEVQTGMGRTGKMFAIEHFGV-EPDIITLA--KAIAGGLPLGAVIGRAELM--FLP-PGS-HANT--------------- 318 (441)
T ss_pred echhhCCCcccceehhhccCC-CCCEEEEc--ccccCCcccEEEEEehhhh--hcC-CCC-CCCC---------------
Confidence 99977 32221 11112211 46988765 9887544578888888873 211 111 0111
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCC
Q 043646 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 346 ~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
+ .|.|..+..+.++++.+ +. .+.++.+.+.+++++.|.++. ...+++.. ..++.++.+.+..+..
T Consensus 319 ------~-~g~p~~~aaa~a~L~~l--~~----~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v-rg~G~~~~i~~~~~~~ 384 (441)
T PRK05769 319 ------F-GGNPVAAAAALATLEEL--EE----GLLENAQKLGEYLRKELKELKEKYEFIGDV-RGLGLMIGVELVKDRK 384 (441)
T ss_pred ------C-CcCHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHhCCCeeee-ecceEEEEEEeccCCc
Confidence 1 23333333334555554 21 455667777777777775431 01111111 1133445444432110
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
+ ...-....+.+.+.+ +||.+.+. ....+|+++++.+
T Consensus 385 -~--------~~~~~~~~~~~~~~~-~Gil~~~~---------------------------------~~~~lr~~p~l~~ 421 (441)
T PRK05769 385 -E--------PDPKLRDKVLYEAFK-RGLLLLGA---------------------------------GKSAIRIIPPLII 421 (441)
T ss_pred -c--------ccHHHHHHHHHHHHh-CCcEEecC---------------------------------CCCEEEEeCCCCC
Confidence 0 000012346666654 69887521 1267999999999
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 043646 505 SNEEFEFILAALEFIAAY 522 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~ 522 (625)
|++|+|++++++++++..
T Consensus 422 t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 422 TEEEADIGLEILEEAIKE 439 (441)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-12 Score=138.26 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=195.7
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..|+ -|+|..+. |...+.|.+++.+++.+....... ....+...++.++|++++..+.+
T Consensus 34 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~------~~~~~~~~~la~~L~~~~p~~~~ 104 (428)
T PRK07986 34 GCELILADGR---RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG------GITHPPAIELCRKLVAMTPQPLE 104 (428)
T ss_pred eeEEEeCCCC---EEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcccc------ccCCHHHHHHHHHHHhhCCCCcC
Confidence 3445555553 48886543 567789999999988653211110 01123455677778777754333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
.+.|+.||+++.-.++-.++... + ....+...+|.....+|.....++...+- .++
T Consensus 105 -~v~f~~SGsEAve~AlklAr~~~-----~-----~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~ 173 (428)
T PRK07986 105 -CVFLADSGSVAVEVAMKMALQYW-----Q-----AKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENL 173 (428)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHH-----H-----hcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCE
Confidence 89999888887333332222100 0 00122222344444555544333322121 122
Q ss_pred EEecCCC------CCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCcC-
Q 043646 207 EIGLDDN------GLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAASG- 274 (625)
Q Consensus 207 ~v~~~~~------~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~- 274 (625)
.++.... ..-|++++++.+.. ..++..+|++... +...|.+.+ +++|.++|++||+++|+|+++..
T Consensus 174 ~~~~p~~~~~~~~~~~d~~~l~~~l~~--~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~ 251 (428)
T PRK07986 174 FAPAPQSRFDGEWDERDIAPFARLMAA--HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGF 251 (428)
T ss_pred EECCCCcccchhhHHHHHHHHHHHHHh--CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3332110 02356778888863 2245678888875 556676532 89999999999999999999742
Q ss_pred CCccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCc----ccCCceEEeeccccccccccccc
Q 043646 275 PYVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPS----TCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 275 g~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~----~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
|-..- -....+. .+|++++ .|.++|. ..+|++++++++. +.+.+. +..+.+
T Consensus 252 GrtG~~fa~~~~gv-~PDi~t~--gK~l~gG~~p~~av~~~~~i~--~~~~~~~~~~~~~~~T----------------- 309 (428)
T PRK07986 252 GRTGKLFACEHAGI-APDILCL--GKALTGGTMTLSATLTTREVA--ETISNGEAGCFMHGPT----------------- 309 (428)
T ss_pred ccCCCeeeecccCC-CCCEEEe--chhhhCCcccCcchhchHHHH--HHhhcCCCCccccCCC-----------------
Confidence 21110 1111111 4688875 4998654 2467778888873 222110 000111
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
..|.|..++.+.++++.+..+ .+.++..++.+++.+.|.++.....++.. ..++.++.+.+..+.
T Consensus 310 -----~~g~p~~~aaa~a~L~~i~~~-----~~~~~~~~~g~~l~~~l~~l~~~~~i~~v-Rg~Gl~~~ve~~~~~---- 374 (428)
T PRK07986 310 -----FMGNPLACAVANASLSLLESG-----DWQQQVAAIEAQLREELAPLRDAPMVADV-RVLGAIGVVETTRPV---- 374 (428)
T ss_pred -----CCcCHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHHhcCCCEEeE-eccceEEEEEeCCcc----
Confidence 124444555555666665221 34566667777777776654111111111 123445555443211
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
....+.+.|.+ +||.+++. ...+|+.+++..|++
T Consensus 375 -----------~~~~~~~~l~~-~Gl~~~~~----------------------------------g~~i~~~Ppl~it~~ 408 (428)
T PRK07986 375 -----------NMAALQRFFVE-QGVWIRPF----------------------------------GKLIYLMPPYIILPE 408 (428)
T ss_pred -----------cHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEeCCCCCCHH
Confidence 13467777755 79988631 157999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 043646 508 EFEFILAALEFIAAY 522 (625)
Q Consensus 508 did~ll~aL~~~~~~ 522 (625)
|+++++++|.+++..
T Consensus 409 ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 409 QLQRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998754
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=133.61 Aligned_cols=347 Identities=14% Similarity=0.095 Sum_probs=190.6
Q ss_pred CCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 65 NDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 65 ~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
.+..+++..|+ -|+|..+ .|...+.|.+++.+++......... ...+...++.++|.+.....
T Consensus 30 ~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~-------~~~~~~~~la~~L~~~~~~~- 98 (408)
T PRK04612 30 QGSRVWDDQGR---EYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNV-------FYSAPPLKLAEELVTASRFA- 98 (408)
T ss_pred eeCEEEECCCC---EEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHhhCCCC-
Confidence 34556666553 4888643 3567889999999988643111110 11233445667777665422
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcCCe------------E
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSLAE------------V 205 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~~------------v 205 (625)
+.+.|+.||+.+.-.++-.++.... . .+-.++ +..|+. ....|.....++...|-. +
T Consensus 99 -~~v~f~~sGseA~e~AlklAr~~~~-----~---~g~~~~-r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~ 168 (408)
T PRK04612 99 -EKVFLCNSGTEANEAAIKLVRKWAS-----S---QGRPAD-KRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGF 168 (408)
T ss_pred -CEEEEcCchHHHHHHHHHHHHHHHH-----h---hCCCCC-CcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCc
Confidence 3799998888874444433321100 0 000112 223444 444555544444332211 1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-cC----HHHHHHHHHHcCCEEEEeccCc-CCCccc
Q 043646 206 VEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-SD----TRSIARLLHQYGGFACFDFAAS-GPYVKI 279 (625)
Q Consensus 206 v~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i 279 (625)
+.++ ..|++.+++++.. +.+.+|++.. .+.+|.+ .+ +++|.++|++||+++|+|+++. +|....
T Consensus 169 ~~~~-----~~d~~~l~~~~~~----~~~aavi~eP-~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~ 238 (408)
T PRK04612 169 RYVD-----FNDVEALEAAMAG----GDVAAVMLEP-IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT 238 (408)
T ss_pred eEcC-----CCCHHHHHHhhCC----CCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc
Confidence 1222 1278888888852 3455665554 4555544 32 7899999999999999999976 222111
Q ss_pred cCCCCC-CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 280 NLRSRN-IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 280 d~~~~~-~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
-+.... .-.+|++++ .|.+++...+|++++++++. +.+..... +.+ ..+.|.
T Consensus 239 ~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~~~~~~--~~~~~~~~-~~t----------------------~~~~p~ 291 (408)
T PRK04612 239 LFAHWQEQVTPDIVTL--AKALGGGFPIGAMLAGPKVA--ETMQFGAH-GTT----------------------FGGNPL 291 (408)
T ss_pred hhhhhhcCCCCCEEEE--cchhcCCCceEEEEECHHHH--hhhcCCCc-CCC----------------------CCCCHH
Confidence 010000 013466655 59997434478888887762 22221110 000 123344
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
...++.++++.+ +. +.+.++.+.+.+++.+.|.++. ...+++.. ..++.++.+.+.++..
T Consensus 292 ~~aaa~a~L~~~--~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~v-rg~Gl~~~i~~~~~~~------------- 352 (408)
T PRK04612 292 AAAVARVALRKL--AS---PQIAANVARQSAALRAGLEALNAEFGVFAQV-RGRGLMLGAVLAPAHA------------- 352 (408)
T ss_pred HHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHhhCCCeeee-eccceEEEEEecCchh-------------
Confidence 444445555554 21 3556677777777777776541 11111111 1234444544432110
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
-....+.+.+.+ +||.+.+. .++.+|+.+++..|++|+++++++|+
T Consensus 353 ~~a~~i~~~l~~-~Gvlv~~~---------------------------------g~~~lRl~Ppl~it~eeid~~l~~l~ 398 (408)
T PRK04612 353 GQAGAILDLAAE-HGLLLLQA---------------------------------GPDVLRFVPALNLTDAELADGLARLR 398 (408)
T ss_pred hHHHHHHHHHHH-CCeEEeeC---------------------------------CCCEEEEcCCccCCHHHHHHHHHHHH
Confidence 013467777754 79998531 13679999999999999999999999
Q ss_pred HHHHh
Q 043646 518 FIAAY 522 (625)
Q Consensus 518 ~~~~~ 522 (625)
+++.+
T Consensus 399 ~~l~~ 403 (408)
T PRK04612 399 LALAD 403 (408)
T ss_pred HHHHH
Confidence 98865
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-12 Score=138.24 Aligned_cols=369 Identities=12% Similarity=0.054 Sum_probs=202.1
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+ .|..++.|.+++.+++.... ..+. .+....+...++.+.|++++..+-+
T Consensus 39 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~-~~~~----~~~~~~~~~~~lae~L~~~~p~~~~ 110 (460)
T PRK06105 39 GIYVYDDAG---KRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLP-FYHT----FSHKSHGPVIDLAEKLVAMAPVPMS 110 (460)
T ss_pred EEEEEECCC---CEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCC-Ceec----ccccCCHHHHHHHHHHHHhCCCCCC
Confidence 344555545 34888643 34568899999999886421 0011 0011234456677888888754333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~ 207 (625)
.|.|+.+|+++.-.++-.++... +.+ -.++...+|.+...+|.....++...|. .+..
T Consensus 111 -~v~f~~SGseAve~AlKlar~~~-----~~~----g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~ 180 (460)
T PRK06105 111 -KVFFTNSGSEANDTVVKLVWYYN-----NAL----GRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILH 180 (460)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHH-----Hhc----CCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEE
Confidence 78998888888433222221000 000 0123332344455566655443322221 1222
Q ss_pred EecCCCCC-------------CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 208 IGLDDNGL-------------LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 208 v~~~~~~~-------------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
++...... ...+++++++.. ...+++.+|++..+....|.+.+ +++|.++|++||+++|+|+
T Consensus 181 ~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~-~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DE 259 (460)
T PRK06105 181 TGCPHYYRFGLPGESEEAFATRLANELEALILA-EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADE 259 (460)
T ss_pred cCCCcccccccCCCChHHHHHHHHHHHHHHHHH-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEec
Confidence 32211000 123567777742 11246789999999888898877 8999999999999999999
Q ss_pred cC-cCCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AA-SGPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~-~~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
++ ++|-.. ......+. .+|+++++ |.+++.. .+|++++++++.. .+.+.....+.+
T Consensus 260 v~tG~GRtG~~f~~~~~~v-~PDi~~~g--K~lggG~~P~~av~~~~~i~~--~~~~~~~~~~~~--------------- 319 (460)
T PRK06105 260 VICGFGRTGNMFGCETFGI-KPDILVMS--KQLSSSYQPLSAVLMNEKVYD--PIADESGKIGTF--------------- 319 (460)
T ss_pred cccCCCcCchhhhHHhcCC-CCCeeeee--cccccCcccceEEEEcHHHHH--HHhcccccCccc---------------
Confidence 97 454321 01111111 57988877 9997542 3688888888732 221110000000
Q ss_pred chhhhh-cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 347 DIEERE-NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 347 ~~~~~~-~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
.... ..|.|-.+++..+.++.+.. +.+.++.+.+.+++.+.|+++....++... ..++.++.+.+..+..
T Consensus 320 --~h~~T~~gnpl~~aaa~a~L~~i~~-----~~l~~~v~~~g~~l~~~L~~l~~~~~v~~v-rG~Gl~~gie~~~~~~- 390 (460)
T PRK06105 320 --GHGFTASGHPVAAAVALENLAIIEE-----RDLVGNAAERGARLQARLRALADHPLVGEV-RGVGLIAAVELVADKA- 390 (460)
T ss_pred --ccCCCCCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHhhcCCCeEEE-EecceEEEEEEecCcc-
Confidence 0000 12334444444556666531 245567777777777777654211111111 1234444554432210
Q ss_pred CCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 426 SPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 426 ~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
...+.+ ...+...+.+ +||.+.+. .+.+|+++
T Consensus 391 --------~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~~----------------------------------g~~i~l~P 427 (460)
T PRK06105 391 --------TKTPFEPPGKVGARANAAAHE-HGVISRAM----------------------------------GDTLAFCP 427 (460)
T ss_pred --------cCCCCCchhHHHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEEC
Confidence 001111 2346666654 79988631 15799999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 501 PYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 501 ~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
++..|++|+|++++++.+++.+..+
T Consensus 428 pl~it~~eid~~~~~l~~~l~~~~~ 452 (460)
T PRK06105 428 PLIITAAQVDEMVDRFGRALDDVAA 452 (460)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877654
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-12 Score=124.40 Aligned_cols=344 Identities=17% Similarity=0.169 Sum_probs=218.4
Q ss_pred CCCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHhCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQ-RMTKMVHEASNYIKRCLGG 136 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~-~~~~~~~~~~~~ia~~~g~ 136 (625)
+.+.++++|-|++ |||.-+ .|.+.+.|.++++++....+- .++ -..+...+..+.+.+++|.
T Consensus 48 a~g~~vwD~eGk~---ylDflsaysaVnqGhchpki~~aLqeq~~kLtl--------ssrafYnd~~~~f~~~vt~lf~~ 116 (427)
T KOG1402|consen 48 AKGSRVWDPEGKE---YLDFLSAYSAVNQGHCHPKIIKALQEQADKLTL--------SSRAFYNDVLGEFAEYVTKLFGY 116 (427)
T ss_pred cCCcEEECCCccc---hhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhh--------hhHHHhhhhHHHHHHHHHHhcCc
Confidence 4457788887754 777422 345788999999887754321 112 2356777889999999998
Q ss_pred CCCCcEEEeCChHHH--HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH----------HHHHHcCC-
Q 043646 137 GQADAIIFCGAGTTA--AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL----------LSWRQSLA- 203 (625)
Q Consensus 137 ~~~~~vift~sGtta--al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~----------~~~~~~G~- 203 (625)
+ .|+-+..|+.+ ....+++-++.... .+ |.++..|+....+++.-. .+|+..|-
T Consensus 117 ~---kvlpmnTGaEa~Eta~KLaR~wgy~~K---------~i-p~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~ 183 (427)
T KOG1402|consen 117 D---KVLPMNTGAEAVETACKLARKWGYRKK---------NI-PKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPF 183 (427)
T ss_pred c---eeeecccchhHHHHHHHHHHHHHHhhc---------cC-CccceeEEEecccccCceeeeEEecCCcchhhccCCC
Confidence 5 56666567666 23334444442222 12 333334554444443322 12333331
Q ss_pred ---eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 204 ---EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 204 ---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
.+..||.+ |.++|+.+|++ ++.+.+++...+..-|++.| ++.+.++|.+|++++|.|++|..-.
T Consensus 184 ~P~~~~~v~Y~-----d~eale~~l~~----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~ 254 (427)
T KOG1402|consen 184 LPGVVDKVPYG-----DAEALEVALKS----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLA 254 (427)
T ss_pred CCCcceeeccC-----CHHHHHHHhcC----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhccc
Confidence 24455544 78999999985 67889999999999999977 7899999999999999999987432
Q ss_pred c-----cccCCCCCCCCCcEEEEcCCCCCCC-CCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 277 V-----KINLRSRNIDGYDAIFLATHKFLGG-PGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 277 ~-----~id~~~~~~~~~D~v~~S~hK~lgg-p~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
. ..|.... .+|++.+. |.|+| ....+.++.++++ +..++|...|. |
T Consensus 255 RTGk~la~d~env---~PDivilg--KalSGG~~Pvsavl~~~~i--m~~~~pgeHgs-T-------------------- 306 (427)
T KOG1402|consen 255 RTGKLLACDYENV---RPDIVILG--KALSGGVYPVSAVLADDDI--MLNIKPGEHGS-T-------------------- 306 (427)
T ss_pred ccCcEEEeehhhc---CCCeEEEe--ccccCCeeeeEEEEecHHH--HhccCCCcccc-c--------------------
Confidence 2 2344443 78999887 88843 3446777788887 33344443221 1
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-E-EEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 351 RENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-I-QVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v-~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
..|.|--+...-|+++++. .+.+.++...+...++.+|.+++. + +++... ..|+-+....+.+..
T Consensus 307 --yggNpLg~~vaiAalevi~-----eekL~era~~lG~~l~~~L~~l~~~~p~~v~~V-RGrGl~~ai~i~~~~----- 373 (427)
T KOG1402|consen 307 --YGGNPLGCAVAIAALEVIV-----EEKLVERAAKLGEILRDQLNKLQKKFPHVVKEV-RGRGLLNAIVINPSK----- 373 (427)
T ss_pred --cCCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccccccchhhee-eccceEEEEEecccc-----
Confidence 1234444444456676663 357888999999999999988742 1 111111 123444444444321
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
..+.+.-+++-.| +..|+...+- | ...+|++++...+++|
T Consensus 374 ------~~~~~aw~~cl~l-k~~g~LAkpt--------H-------------------------~~IiRfaPPL~I~e~d 413 (427)
T KOG1402|consen 374 ------TSGQDAWDVCLAL-KENGLLAKPT--------H-------------------------GNIIRFAPPLVISEED 413 (427)
T ss_pred ------ccchhHHHHHHcc-cccccccCCC--------C-------------------------CCeEEecCCcccCHHH
Confidence 2234455677666 4467776532 1 2689999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043646 509 FEFILAALEFIAA 521 (625)
Q Consensus 509 id~ll~aL~~~~~ 521 (625)
++.-+++|++.+.
T Consensus 414 l~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 414 LREGIEAIEKTIA 426 (427)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998753
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-12 Score=135.16 Aligned_cols=334 Identities=19% Similarity=0.151 Sum_probs=211.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeC-ChHHH---HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCC
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCG-AGTTA---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYE 190 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~-sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~ 190 (625)
...++.+++.++++++++..|.+ .+.|-. +|+.. +|..+-.-+. .-..|.+.+.+++-..
T Consensus 576 QaqGY~~lf~~Le~~Lc~iTG~D---~~s~QPNsGA~GEYaGL~~IRaY~~-------------~kge~hRnvClIPvSA 639 (1001)
T KOG2040|consen 576 QAQGYQQLFTELEKDLCEITGFD---SFSLQPNSGAQGEYAGLRVIRAYLE-------------SKGEGHRNVCLIPVSA 639 (1001)
T ss_pred HHhhHHHHHHHHHHHhheeeccc---ceeecCCCCcccchhhHHHHHHHHH-------------hccCCcceeEEEeecc
Confidence 34567788999999999999986 445543 23332 4443322111 1245667789999999
Q ss_pred CchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc-CHHHHHHHHHHcCCEEEEe
Q 043646 191 HHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS-DTRSIARLLHQYGGFACFD 269 (625)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~-~l~~I~~la~~~g~~vivD 269 (625)
|..+..+..+.|.+|+.|.++.+|.+|+.+|+++.+++ .+.-.++.++.|++. |++. .+++++++.|+||.-|..|
T Consensus 640 HGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh--~~~Laa~MvTYPST~-GvfE~~i~d~cd~iHehGGQVYlD 716 (1001)
T KOG2040|consen 640 HGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKH--KDNLAALMVTYPSTH-GVFEEGIDDICDIIHEHGGQVYLD 716 (1001)
T ss_pred cCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHh--hhhhheeEEeccccc-ccccccHHHHHHHHHhcCCEEEec
Confidence 99999999999999999999999999999999988753 346678888888754 7774 5999999999999999999
Q ss_pred ccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCC-----CCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 270 FAASGPYVKINLRSRNIDGYDAIFLATHKFLGGP-----GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 270 ~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp-----~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
+|.--..+.+- +++ .-|.|+.-++.||.|.-| .|.|-+.|++.+. |+.++...|+.. ...++..
T Consensus 717 GANMNAqVGlc-~pG-d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLa------pfLP~HpVvs~~---~~~~~~~ 785 (1001)
T KOG2040|consen 717 GANMNAQVGLC-RPG-DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA------PFLPSHPVVSPG---RPEDTSP 785 (1001)
T ss_pred CCCccceeccc-CCc-cccccceeecccceeeecCCCCCCCCCccchhhhcc------ccCCCCCccCCC---CCCCCCC
Confidence 99554333221 111 118899999999999433 2367788888873 222221111000 0000000
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCC
Q 043646 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 345 ~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
...+ ..--.|+..++.+--+-+... ...|...-.+-..-+++|+.++|+..-.+-..+.. ..--.-|++.-.
T Consensus 786 ~gsV-saaP~Gsa~ILpISwaYikmM--G~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~---~~vaHEFIlD~r-- 857 (1001)
T KOG2040|consen 786 VGSV-SAAPWGSALILPISWAYIKMM--GSGGLKDASKIAILNANYMAKRLESHYKILFRGEN---GLVAHEFILDLR-- 857 (1001)
T ss_pred ccce-eccCCCcceeehhHHHHHHHh--cccccchhhHHHhhhhHHHHHHHhhccceeEecCC---cceeeeeeeech--
Confidence 0000 000123333333322223322 33455554555566799999999874222222221 111122333111
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
..+...++...+|+++|.| +|....+-+++. +|.+-|-+.-.-
T Consensus 858 ------~fK~~agieavDvAKRL~D-YgFHaPTmswPV------------------------------~gtLMIEPTESE 900 (1001)
T KOG2040|consen 858 ------PFKKTAGIEAVDVAKRLMD-YGFHAPTMSWPV------------------------------AGTLMIEPTESE 900 (1001)
T ss_pred ------hhccccCCcHHHHHHHHHh-ccCCCCcccccc------------------------------CCceEeccCccc
Confidence 0123356888899999976 899887665543 488899998888
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 043646 505 SNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~ 523 (625)
+.+|+|+|++++-.+-++.
T Consensus 901 ~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 901 DKAELDRFCDALISIREEI 919 (1001)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876554
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-11 Score=135.13 Aligned_cols=366 Identities=15% Similarity=0.076 Sum_probs=197.7
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ .|+|..++ |...+.|.+++.+++.... ..+.. .....+...++.+.|++.+..+-+
T Consensus 41 G~~l~D~dG~---~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~-~~~~~----~~~~~~~~~~lAe~L~~~~p~~~~ 112 (461)
T PRK07482 41 GIRITDAQGR---RYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELA-YYHTY----VGHGTEASITLSKRIIDRAPAGMS 112 (461)
T ss_pred eeEEEECCCC---EEEEcccchhhhcCCCCCHHHHHHHHHHHHhcC-ccccc----cccCCHHHHHHHHHHHHhCCCCcC
Confidence 4555555553 48887655 5678899999999886431 01110 001234556677778887754333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHcC------------CeEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQSL------------AEVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~G------------~~vv 206 (625)
.+.|+.||+++.-.++-.++.... . .-.++ +..|+.- ..+|.....+....| ..+.
T Consensus 113 -~v~f~~sGSEAve~AlKlAr~~~~-----~----~g~~~-r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~ 181 (461)
T PRK07482 113 -KVYYGLSGSDANETQIKLVWYYNN-----V----LGRPE-KKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVL 181 (461)
T ss_pred -EEEEeCchHHHHHHHHHHHHHHHH-----h----cCCCC-CceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCE
Confidence 789998888883333322221000 0 00122 2245554 445543332222111 1222
Q ss_pred EEecCC--C----C-------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDD--N----G-------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~--~----~-------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.++... . + .-++++|++.+.+ ...+++.+|++..+....|.+.| +++|.++|++||+++|+|
T Consensus 182 ~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~D 260 (461)
T PRK07482 182 HTEAPHYYRRADAGMSEEQFSAYCADELEELILA-EGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIAD 260 (461)
T ss_pred EcCCCccccccccCCCHHHHHHHHHHHHHHHHHh-cCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 332221 1 0 0145677777752 11246789999988888888855 789999999999999999
Q ss_pred ccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 270 FAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 270 ~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
+++. +|-.. ......+. .+|+++++ |.+++.. .+|++++++++.. .+.......+.+.
T Consensus 261 EV~tGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~--~~~~~~~~~~~~~------------- 322 (461)
T PRK07482 261 EVVTGFGRLGSMFGSDHYGI-EPDLITVA--KGLTSAYAPLSGSIVGEKVWD--VLEQGSDEHGAIG------------- 322 (461)
T ss_pred ccccCCCcCcchhhHHhcCC-CCCEEEEc--cccccCccccceeeecHHHHH--HHhcccccCCccc-------------
Confidence 9965 32211 11111111 57999987 9997643 4688888887732 1111000000000
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC----CCCcEEEeCCCCCCCcceEEEEecc
Q 043646 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL----PNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 346 ~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~----~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
...-..|.|-.+++..+.++.+ +. +.+.++.+.+.+++.+.|. +.|.+.-+. .++.++.+.+..
T Consensus 323 ---h~~T~~gnpl~~Aaa~a~L~~~--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vr----G~Glm~giel~~ 390 (461)
T PRK07482 323 ---HGWTYSGHPICAAAALANLDIL--ER---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVR----GVGMLAAVEFVA 390 (461)
T ss_pred ---cCCCCCcCHHHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEe----eceeEEEEEecc
Confidence 0000123344444444555555 22 2345555666666666664 334332111 133444444432
Q ss_pred CCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 422 TTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
+.. ...+.+ ...+...+.+ +||.++++. ....+
T Consensus 391 ~~~---------~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~~--------------------------------~~~~i 428 (461)
T PRK07482 391 DRD---------DRTPFDPALKIGPQVSAAALE-RGVIARAMP--------------------------------HGDIL 428 (461)
T ss_pred CCC---------cCCCCChhhHHHHHHHHHHHH-CCcEEecCC--------------------------------CCCEE
Confidence 110 001111 2356666655 798876321 02679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|+.+++.+|++|+++++++|++.+.+.
T Consensus 429 ~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 429 GFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-11 Score=131.48 Aligned_cols=367 Identities=11% Similarity=0.078 Sum_probs=199.6
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..| .-|+|..+ .|...+.|.+++.+++......+.. ...+...++.+.|+++++..
T Consensus 38 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~-------~~~~~~~~lae~l~~~~~~~-- 105 (451)
T PRK07678 38 GAWVTDIQG---NRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLT-------QSHEPAIKLAEKLNEWLGGE-- 105 (451)
T ss_pred eeEEEeCCC---CEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccc-------cCCHHHHHHHHHHHHhCCCC--
Confidence 345555545 34888643 3667889999999888643211110 11234456777888887643
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~ 207 (625)
+.+.|+.||+.+.-.++-.++.... . .=+++...+|.....+|.....++...|. .+..
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~t~-----~----~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 176 (451)
T PRK07678 106 YVIFFSNSGSEANETAFKIARQYHA-----Q----KGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLH 176 (451)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHH-----h----cCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEE
Confidence 3789998888874443333321000 0 00123322333444555554433332221 2233
Q ss_pred EecCCCCCC---------C---HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEecc
Q 043646 208 IGLDDNGLL---------D---IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 208 v~~~~~~~l---------d---~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A 271 (625)
++....... | ++.+++.+.. ...+++.+|++..+....|.+.| +++|.++|++||+++|+|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV 255 (451)
T PRK07678 177 VPPPDCYRMPGIESEDIYDLECVKEIDRVMTW-ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEV 255 (451)
T ss_pred eCCCccccccccCChHHHHHHHHHHHHHHHHh-cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeeh
Confidence 332211111 1 2235556642 12246889999988888888866 78999999999999999999
Q ss_pred Cc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 272 AS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 272 ~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+. +|-.. ......+. .+|+++++ |.+|+. ..+|++++++++.. .+.+... .+.+.
T Consensus 256 ~tGfGRtG~~~~~~~~gv-~PDivt~g--K~lggG~~Pi~av~~~~~i~~--~~~~~~~-~~~~~--------------- 314 (451)
T PRK07678 256 ICGFGRTGKAFGFMNYGV-KPDIITMA--KGITSAYLPLSATAVKKEIYE--AFKGKGE-YEHFR--------------- 314 (451)
T ss_pred hhcCCcCchhHHHHhcCC-CCCEEEee--cccccCCcceeEEEEcHHHHH--HHhccCc-ccccc---------------
Confidence 74 43321 11122222 57999886 999764 24799999988732 2221100 00000
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC----CCCcEEEeCCCCCCCcceEEEEeccCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL----PNQNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~----~l~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
...-..|.|-.++...++++.+. .. .+.++.+++.+++.+.|. +.+.+.-+ ..++.++.+.+..+.
T Consensus 315 -h~~T~~gnp~~~aaa~a~l~~l~--~~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v----rg~Gl~~~i~~~~~~ 384 (451)
T PRK07678 315 -HVNTFGGNPAACALALKNLEIME--NE---NLIERSAQLGELLLEQLKEELGEHPLVGDI----RGKGLLVGIELVNDK 384 (451)
T ss_pred -cCCCCCcCHHHHHHHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEE----EeeceEEEEEEecCC
Confidence 00001233444444455666552 22 345566666666666654 33332111 123455555553321
Q ss_pred CCCCccccccCCCCCC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 424 NSSPENMKIERNKPLH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
. ...+.+ ...+...|.+ +||.+.+.. ...+ . ....+|+++
T Consensus 385 ~---------~~~~~~~~~a~~i~~~l~~-~Gv~~~~~g-~~v~-~-------------------------~~~~lrl~P 427 (451)
T PRK07678 385 E---------TKEPADNDKVASVVAACKE-KGLIIGKNG-DTVA-G-------------------------YNNVLTLSP 427 (451)
T ss_pred c---------ccCcCchHHHHHHHHHHHH-CCcEEeecC-cccc-C-------------------------CCCEEEEEC
Confidence 0 000101 2456666755 799886311 0000 0 136799999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 043646 501 PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 501 ~~~~t~edid~ll~aL~~~~~~ 522 (625)
++.+|++|||++++++++++..
T Consensus 428 pl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 428 PLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred CCcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998864
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-12 Score=122.81 Aligned_cols=322 Identities=16% Similarity=0.117 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhH
Q 043646 118 RMTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNL 195 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~ 195 (625)
+...+.+.+...+.+-+|..- +++|.+| +|+..+...+...|+-+. ..|+...|+.+ .++|..+.
T Consensus 75 G~~~li~ala~~l~~~ygwnit~~NIalT-nGSQs~fFYlfNlF~G~~------------sdG~~k~illPLaPeYiGY~ 141 (417)
T COG3977 75 GKAVLIDALAKMLRREYGWNITAQNIALT-NGSQSAFFYLFNLFAGRR------------SDGTEKKILLPLAPEYIGYA 141 (417)
T ss_pred chhHHHHHHHHHHHHHhCCCCccceeeec-CCccchHHHHHHHhcCcc------------CCCcceeEeeccChhhcccc
Confidence 345677888888888888763 3389999 899999998888886332 33444345554 56666654
Q ss_pred HHHHHcCCeEEE----EecCC----CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCC
Q 043646 196 LSWRQSLAEVVE----IGLDD----NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGG 264 (625)
Q Consensus 196 ~~~~~~G~~vv~----v~~~~----~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~ 264 (625)
.+...-. -.|. +.+.+ ..++|.++|.- . +.+-+|+++-|+||||.+.- +..|.+++++||+
T Consensus 142 d~~l~~d-~fVs~kP~iel~~~g~FKY~vDF~~l~i--~-----e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~gi 213 (417)
T COG3977 142 DAGLEED-LFVSAKPNIELLPAGQFKYHVDFEHLHI--G-----ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGI 213 (417)
T ss_pred ccccCcc-ceeeccCCcccccccceeeccCHHHccc--c-----cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCC
Confidence 2211100 0111 11112 24788887752 2 57899999999999999843 6677889999999
Q ss_pred EEEEeccCcCCCccccCCCCCC-CCC-cEEEEcCCCCCCCCCC-ceEEEEeccccc-cCCCCCcccCCceEEeecccccc
Q 043646 265 FACFDFAASGPYVKINLRSRNI-DGY-DAIFLATHKFLGGPGT-PGILLISKALYQ-LGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 265 ~vivD~A~~~g~~~id~~~~~~-~~~-D~v~~S~hK~lggp~g-~G~l~v~~~~~~-l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
.+++|.|++++.-.+-+.+... .+. -+.|+|.+|. |-|+. ||+++.++++.+ +..+. +.++..
T Consensus 214 PliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG~R~GIiIane~viqaitnmn------~iisLa------ 280 (417)
T COG3977 214 PLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKL-GLPGSRCGIIIANEKVIQAITNMN------GIISLA------ 280 (417)
T ss_pred cEEEecccCCCCCceecccccccCCCCEEEEeehhhc-CCCCcceeEEEccHHHHHHHHhcc------ceeeec------
Confidence 9999999998776554433211 122 3678899996 66764 999999988833 11110 000000
Q ss_pred ccccccchhhhhcCCChhHHHHHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEe
Q 043646 341 DTLYLEDIEERENGGTPQIVQMIRAALAFW-VKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLV 419 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~~aal~~~-~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~ 419 (625)
..+ .| |.+.+-+-..-++. +.++.=..-.+.+.+.-...+++.|-+. -+.+..| .++|+.+.-
T Consensus 281 --------p~~--~G-~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-~~~iHkp----EGAIFlWLW 344 (417)
T COG3977 281 --------PGR--MG-PAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-RCLIHKP----EGAIFLWLW 344 (417)
T ss_pred --------CCC--cc-HHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-ceeeecC----Ccceeehhh
Confidence 000 01 12211110000110 0011101111223333333444444433 3455555 468888887
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
+.+ .+++..++.++|.+ .|+.+.+|..|-. +++.+... ...++|++
T Consensus 345 f~d-------------LPItt~~LYq~LKa-~Gvl~VPG~~FFp-------Gl~~ewpH-------------~hqC~Rmn 390 (417)
T COG3977 345 FKD-------------LPITTEELYQRLKA-RGVLMVPGHYFFP-------GLDKEWPH-------------THQCMRMN 390 (417)
T ss_pred hcc-------------CCCCHHHHHHHHHh-CeEEEecccccCC-------CCCCCCCC-------------ccceEEEe
Confidence 754 46788999999954 7999999986542 23222111 25899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+. -+++.++.-+++|.+-++..+.
T Consensus 391 ~~--~~~~~ie~Gva~lae~ve~~yq 414 (417)
T COG3977 391 YV--PEPEKIEKGVAILAEEVERAYQ 414 (417)
T ss_pred cC--CCHHHHHHHHHHHHHHHHHHHh
Confidence 74 3789999999999887776543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-11 Score=131.11 Aligned_cols=348 Identities=18% Similarity=0.109 Sum_probs=193.2
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC-
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ- 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~- 138 (625)
+..+.+..|+ -|+|..+ .|..++.|.+++.+++... ...+.. ........++.+++++.+..+.
T Consensus 30 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~~-----~~~~~~~~~lae~l~~~~~~~~~ 100 (425)
T PRK09264 30 GSWLYDEDGK---EYIDFFAGAGALNYGHNNPVLKQALIDYLQRD-GITHGL-----DMHTTAKREFLETFEETILKPRG 100 (425)
T ss_pred cCEEEeCCCC---EeeecccchhhccCCCCCHHHHHHHHHHHHhc-cccccc-----ccCcHHHHHHHHHHHHhhcCCcC
Confidence 3445555553 4888633 3667899999999988531 111111 0112344556677777653221
Q ss_pred -CCcEEEe-CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------Ce
Q 043646 139 -ADAIIFC-GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AE 204 (625)
Q Consensus 139 -~~~vift-~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~ 204 (625)
++.+.|+ .||+.+.-.++-.++. . +|.+.+|......|.....++...| ..
T Consensus 101 ~~~~~~f~~~sGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~ 165 (425)
T PRK09264 101 LDYKVQFTGPTGTNAVEAALKLARK--------------V-TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNN 165 (425)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHH--------------h-cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCC
Confidence 2246664 5788874433333321 1 2322234444455554443333211 13
Q ss_pred EEEEecCCCC---CCCHHHHHHHHHHhhhC-CCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCcC-C
Q 043646 205 VVEIGLDDNG---LLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAASG-P 275 (625)
Q Consensus 205 vv~v~~~~~~---~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~~-g 275 (625)
+..+|..... .-|+++|++.+.+.... +++.+|++..+....|.+. .+++|.++|++||+++|+|++++. |
T Consensus 166 ~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~G 245 (425)
T PRK09264 166 VTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCG 245 (425)
T ss_pred eEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCc
Confidence 4455543210 12678888888642111 3578999999998888764 389999999999999999999862 2
Q ss_pred Cc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 276 YV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 276 ~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
-. ..+.... .+|+++++ |.+++.+ .+|++++++++. ...+... +++
T Consensus 246 rtG~~~~~~~~~v---~PDi~t~~--K~l~~~G~pigav~~~~~i~---~~~~~~~-~~T-------------------- 296 (425)
T PRK09264 246 RTGTFFSFERAGI---TPDIVTLS--KSISGYGLPMALVLIKPELD---VWKPGEH-NGT-------------------- 296 (425)
T ss_pred cccHHHHHhhcCC---CCCEEEec--cccCCCccceEEEEEchhhh---ccCCCcc-CCC--------------------
Confidence 11 1111122 56888775 9997422 369999987751 1211110 001
Q ss_pred hhcCCChhHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 351 RENGGTPQIVQMIRAAL-AFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal-~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
..|.|.......+++ .++ + .+.+.++.+.+.+++.+.|.++ |.+ + .+. ...+.++.+.+.+..
T Consensus 297 --~~gnp~~~aaa~a~l~~~~--~---~~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~-~~v-rg~Gl~~~i~l~~~~-- 364 (425)
T PRK09264 297 --FRGNNLAFVTATAALEEYW--S---DDAFEKEVKAKGELVRERLEEIAAKYPGL-G-AEV-RGRGMMQGIDFGDGE-- 364 (425)
T ss_pred --CCCCHHHHHHHHHHHHHHH--h---hhHHHHHHHHHHHHHHHHHHHHHHhCCCc-e-ecc-eecccEEEEEecChH--
Confidence 013332222223444 232 1 2356667777777777766543 322 1 111 112333333332210
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS 505 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t 505 (625)
....+.+.+.+ .||.+.+... ....+|+++++.+|
T Consensus 365 -------------~~~~l~~~~~~-~Gv~~~~~~~-------------------------------~~~~lr~~p~l~~t 399 (425)
T PRK09264 365 -------------LAGKIAAEAFE-NGLIIETSGP-------------------------------EDEVVKLLPPLTID 399 (425)
T ss_pred -------------HHHHHHHHHHH-CCCEEeccCC-------------------------------CCCEEEEeCCCCCC
Confidence 13456777755 6998864211 13679999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 043646 506 NEEFEFILAALEFIAAYG 523 (625)
Q Consensus 506 ~edid~ll~aL~~~~~~~ 523 (625)
++|+++++++|++++.+.
T Consensus 400 ~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 400 EEELEEGLDILEEAVAEV 417 (425)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-11 Score=134.99 Aligned_cols=358 Identities=14% Similarity=0.062 Sum_probs=196.8
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ .|+|..+. |...+.|.+++.+++......... +....+...++.++|.+.+...-+
T Consensus 42 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~-----~~~~~~~~~~lae~L~~~~p~~~~ 113 (466)
T PRK07036 42 GIYVTDADGR---RYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPF-----GDMTNAPAAELAAKLAELAPGDLN 113 (466)
T ss_pred eeEEEECCCC---EEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccc-----cccCCHHHHHHHHHHHHhCCCCcC
Confidence 3445555453 48887444 567889999999888542111110 001233455677777777654333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcCC------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSLA------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~------------~vv 206 (625)
.|.|+.||+++.-.++-.++.... .+ -.++.. .|+. ...+|.....++...|- .+.
T Consensus 114 -~v~f~~sGseAve~AlklAr~~~~-----~~----g~t~r~-~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~ 182 (466)
T PRK07036 114 -HVFLTTGGSTAVDSALRFVHYYFN-----VR----GRPAKK-HIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVH 182 (466)
T ss_pred -EEEEeCCchHHHHHHHHHHHHHHH-----hc----CCCCcc-EEEEEcCccCCccHhhhcccCCCcccccccCCCCCcE
Confidence 799998888873333322221000 00 012222 3444 44555544333322211 133
Q ss_pred EEecCCC----CCCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 207 EIGLDDN----GLLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 207 ~v~~~~~----~~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
.++.... .... ++.+++.+.. ...+++.+|++..+....|.+.| +++|.++|++||+++|+|+
T Consensus 183 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DE 261 (466)
T PRK07036 183 HLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS-LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDE 261 (466)
T ss_pred EecCCcccccccCCChHHHHHHHHHHHHHHHHH-cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEee
Confidence 3332210 0111 2345555542 12356889999999888899887 8999999999999999999
Q ss_pred cCc-CCCcc--ccCC-CCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc------ccCCceEEeeccccc
Q 043646 271 AAS-GPYVK--INLR-SRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS------TCGGGTVNYVNAFDE 339 (625)
Q Consensus 271 A~~-~g~~~--id~~-~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~------~~ggg~v~~~~~~~~ 339 (625)
++. +|-.. .... .++. .+|+++++ |.+++.. .+|++++++++.+ .+.+. +..++|
T Consensus 262 V~tGfGRtG~~~~~~~~~gv-~PDivt~g--K~l~gG~~Pi~av~~~~~i~~--~~~~~~~~~~~~~~~~T--------- 327 (466)
T PRK07036 262 VVTGFGRLGHFFASEAVFGI-QPDIITFA--KGLTSGYQPLGAVIISERLLD--VISGPNAKGNVFTHGFT--------- 327 (466)
T ss_pred chhCCCcCchhhhhhhhcCC-CCCEEEEc--cccccCccccEEEEEcHHHHH--HHhcccCcCcccccCCC---------
Confidence 974 43221 1121 1112 57998886 9997642 4788899988732 22110 011111
Q ss_pred cccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEE
Q 043646 340 KDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILS 416 (625)
Q Consensus 340 ~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~ 416 (625)
..|.|-.+++..+.++.+. . +.+.++.+.+.+++.+.|..+ |.+.-+ ...+..+.
T Consensus 328 -------------~~gnpl~~aaa~a~Le~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v----rG~Gl~~~ 385 (466)
T PRK07036 328 -------------YSGHPVACAAALKNIEIME--R---EGLCEHVREVGPYFEERLASLRELPLVGDV----RGDHLMAC 385 (466)
T ss_pred -------------CCCCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHhccCCCEEEE----EeeceEEE
Confidence 1233444444445555552 2 245566666677777666543 322111 11334455
Q ss_pred EEeccCCCCCCccccccCCCCC--C---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 417 FLVYSTTNSSPENMKIERNKPL--H---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~l--~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
+.+..+.. ..... + ...+.+.+.+ +||.+++.
T Consensus 386 ve~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~--------------------------------- 422 (466)
T PRK07036 386 VECVADKG---------SKALLPEDIAIGQRIDRHCQE-RGLLVRPL--------------------------------- 422 (466)
T ss_pred EEEccCcc---------ccCCCCchhHHHHHHHHHHHH-CCcEEeec---------------------------------
Confidence 44432210 00011 1 2346666654 69888631
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 492 KPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 492 ~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+.+|+++++.+|++|+|++++++.+++...
T Consensus 423 -~~~~~l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 423 -EHLCVLSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred -CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1568999999999999999999999988775
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-11 Score=134.39 Aligned_cols=363 Identities=13% Similarity=0.038 Sum_probs=200.5
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..++ |...+.|.+++.+++......... + ....+...++.++|++.+..+.+
T Consensus 37 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~--~---~~~~~~~~~lae~L~~~~p~~~~ 108 (459)
T PRK05965 37 GATLTDASG---HQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGY--F---HFGSEPAIRLAAKLAERAPGSLN 108 (459)
T ss_pred EeEEEECCC---CEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccc--c---ccCCHHHHHHHHHHHhhCCCCcC
Confidence 345555555 358887554 456789999999988643111110 0 01123445677777777653333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~ 207 (625)
.+.|+.+|+++.-.++-.++.... ..=+++...+|.....+|.....+....|. .+..
T Consensus 109 -~v~f~~sGSEAve~AlKlAr~~~~---------~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~ 178 (459)
T PRK05965 109 -HVYFTLGGSDAVDSAVRFIRHYWN---------ATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHK 178 (459)
T ss_pred -EEEEeCChhHHHHHHHHHHHHHHH---------hcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEE
Confidence 799987888883333322221000 000122222344444555554332222111 1233
Q ss_pred EecCCCC----CCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEecc
Q 043646 208 IGLDDNG----LLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 208 v~~~~~~----~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A 271 (625)
++..... .-| ++++++.+... ..+++.+|++..+....|.+.| +++|.++|++||+++|+|++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV 257 (459)
T PRK05965 179 IPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL-GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEV 257 (459)
T ss_pred cCCCcccccccCCChHHHHHHHHHHHHHHHHhc-CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence 3322100 113 25677777531 1146789999988888888765 78999999999999999999
Q ss_pred CcC-CCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc------ccCCceEEeeccccccc
Q 043646 272 ASG-PYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS------TCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 272 ~~~-g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~------~~ggg~v~~~~~~~~~~ 341 (625)
+.. |-.. ......+. .+|+++++ |.+++.. .+|++++++++.. .+.+. ...++|
T Consensus 258 ~tGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~--~~~~~~~~~~~~~h~~T----------- 321 (459)
T PRK05965 258 ITGFGRTGPLFACEAEGV-VPDLMTVA--KGLTSGYVPMGAVLMSDHVYQ--GIADGAGAAAPVGHGYT----------- 321 (459)
T ss_pred hccCccCchhhhHhhcCC-CCCeEEec--hhhccCCcceeEEEEcHHHHH--HHhccccccccccccCC-----------
Confidence 653 2211 11111112 57999997 9997653 5799999988832 22110 001111
Q ss_pred cccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 342 TLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
..|.|-.+++..+.++++ + .+.+.++.+.+.+++.+.|+++....+++.. ...+.++.+.+..
T Consensus 322 -----------~~gnpl~~Aaa~a~L~~l--~---~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rG~Gl~~gie~~~ 384 (459)
T PRK05965 322 -----------YSAHPVSAAVGLEVLRLY--H---EGGLLANGQKAGPRFAAGLDALRAHPLVGDV-RGRGLLGALELVA 384 (459)
T ss_pred -----------CCCCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHhhccCCCEEEE-eecceEEEEEEec
Confidence 123343344444555555 2 2345667777777777777654211111111 1234445554432
Q ss_pred CCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 422 TTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
+.. ...+.. ...+.+.+.+ +||.+++ + ....+
T Consensus 385 ~~~---------~~~~~~~~~~~~~~i~~~~~~-~Gll~~~---~------------------------------g~~~i 421 (459)
T PRK05965 385 DKA---------TKTPFDAALDPADRIFDRAYA-NGLVFRA---F------------------------------GDGVL 421 (459)
T ss_pred ccc---------ccCCCCchhHHHHHHHHHHHh-CCeEEEe---c------------------------------CCcEE
Confidence 210 000100 2346666654 7998862 1 12679
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|+.+++.+|++|+++++++|.+++.+.
T Consensus 422 ~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 422 GFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred EEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-11 Score=135.41 Aligned_cols=363 Identities=14% Similarity=0.116 Sum_probs=198.9
Q ss_pred CCCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~ 137 (625)
+.+..+.+..|+ -|+|..+ .|...+.|.+++.+++.......... ...+...++.+.|++.++..
T Consensus 43 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~------~~~~~~~~lAe~L~~~~p~~ 113 (453)
T PRK06943 43 GEGAWLYDRDGR---RYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAG------CTHEPAIELAERLAALTGGT 113 (453)
T ss_pred cccCEEEeCCCC---EEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccc------cCCHHHHHHHHHHHHhCCCC
Confidence 334556666553 4888643 36678999999999886431111100 01234456777777877643
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eE
Q 043646 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EV 205 (625)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~v 205 (625)
-+ .+.|+.+|+.+.-.++-.++... +.+ -.++...+|.....+|.....++...|- .+
T Consensus 114 ~~-~v~f~~sGseAve~AlKlA~~~~-----~~r----g~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~ 183 (453)
T PRK06943 114 LG-HAFFASDGASAVEIALKMSFHAW-----RNR----GRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHA 183 (453)
T ss_pred CC-EEEEeCCCHHHHHHHHHHHHHHH-----HHh----CCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCC
Confidence 33 79999888887333332221100 000 0123222344444555544333322221 12
Q ss_pred EEEecCCC-C-----------CCCHHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCEEEE
Q 043646 206 VEIGLDDN-G-----------LLDIEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 206 v~v~~~~~-~-----------~ld~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
..++.... + .-+++.+++.+.. ..+++.+|++.. +....|.+.| +++|.++|++||+++|+
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~ 261 (453)
T PRK06943 184 HVVASPDARGARPGETAADVAARALADVRRLFAE--RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIA 261 (453)
T ss_pred EEECCCCccccccCCCHHHHHHHHHHHHHHHHHh--CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEe
Confidence 33432211 0 0134677777763 235688999988 4777788755 78999999999999999
Q ss_pred eccCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 269 DFAAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 269 D~A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
|+++. +|-... ..+..+. .+|+++++ |.+++.. .+|++++++++.. .+.+....+.. .
T Consensus 262 DEV~TG~GRtG~~fa~~~~gv-~PDivt~g--Kgl~gG~~Pi~av~~~~ei~~--~~~~~~~~~~~-~------------ 323 (453)
T PRK06943 262 DEIAVGCGRTGTFFACEQAGV-WPDFLCLS--KGISGGYLPLSLVLSRDAIFA--AFYDDDVTRGF-L------------ 323 (453)
T ss_pred echhhCCCCCcchhHHHhCCC-CCCeEeee--hhhccCcccceEEEEcHHHHH--hhcccCccCCc-c------------
Confidence 99965 332211 1111111 57999997 9887652 4789999988732 22110000000 0
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEecc
Q 043646 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 345 ~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
...-..|.|-.++...+.++.+ +. +.+.++..++.+++.+.|+++ +.+.-+ ..++..+.+.+..
T Consensus 324 ----~~~T~~gnpl~~aaa~a~L~~i--~~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~v----rG~Gl~~gvel~~ 390 (453)
T PRK06943 324 ----HSHSYTGNPLACRAALATLDLF--AE---DDVLARNARKSARLRAALAPLAAHPQVRHL----RQRGTIFAFDVAL 390 (453)
T ss_pred ----CCCCCCCCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHhcCCCEEeE----eccccEEEEEEcc
Confidence 0000123343344444555555 22 234556666666666666543 433211 1234455555432
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~ 501 (625)
+.+. ...+ ...+.+.+.+ +||.+.+. ...+|++++
T Consensus 391 ~~~~---------~~~~-~~~i~~~~~~-~Gll~~~~----------------------------------g~~l~~~Pp 425 (453)
T PRK06943 391 DGDA---------ARTF-SRRFFEAALE-RELLLRPI----------------------------------GTTVYLMPP 425 (453)
T ss_pred CCCc---------chHH-HHHHHHHHHH-CCcEEEec----------------------------------CCEEEEeCC
Confidence 1100 0000 2356666655 79988631 145999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 043646 502 YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 502 ~~~t~edid~ll~aL~~~~~~~ 523 (625)
+.+|++|+|+++++|++.+.+.
T Consensus 426 l~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 426 YVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred CcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988763
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-11 Score=133.31 Aligned_cols=343 Identities=12% Similarity=0.075 Sum_probs=184.9
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. |-.++.+.+++.+++.... ...... . ......++.+.+++..+.+..+.++|+.+|+.+
T Consensus 41 ~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~-~~~~~~--~---~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea 114 (425)
T PRK08088 41 REYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQV--L---AYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEA 114 (425)
T ss_pred CEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC-Cccccc--c---CCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHH
Confidence 347886443 5568899999988885431 111100 0 012233566777777765432378888789985
Q ss_pred ---HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEEE--EecCCC
Q 043646 152 ---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVVE--IGLDDN 213 (625)
Q Consensus 152 ---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~--v~~~~~ 213 (625)
+|+++.. . .++ .+ +|.+.+..|..........+- .+.. +|.+.+
T Consensus 115 ~e~Alklar~-~---------------~~r-~~-iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 176 (425)
T PRK08088 115 VENAVKIARA-A---------------TKR-SG-VIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH 176 (425)
T ss_pred HHHHHHHHHH-H---------------hCC-Ce-EEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCcccc
Confidence 5554321 1 122 22 566666666665444332221 0111 222222
Q ss_pred CCCC----HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCcc--ccCC
Q 043646 214 GLLD----IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVK--INLR 282 (625)
Q Consensus 214 ~~ld----~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~--id~~ 282 (625)
+ .+ ++.|++++.+..+.++..+|++.......|.+.+ +++|.++|++||+++|+|++++. +... ..+.
T Consensus 177 ~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~ 255 (425)
T PRK08088 177 G-VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAME 255 (425)
T ss_pred C-ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHh
Confidence 1 22 4568887752112246788888888877787766 89999999999999999999773 2211 0111
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH-
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ- 361 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~- 361 (625)
..+ ..+|+ .++.|.+++...+|+++.++++. +.+..... ....+.+++.+
T Consensus 256 ~~~-~~pdi--~s~sK~l~~G~rig~v~~~~~~~--~~~~~~~~------------------------~~t~~~~~~~~~ 306 (425)
T PRK08088 256 QMG-VAADL--TTFAKSIAGGFPLAGVTGRAEVM--DAIAPGGL------------------------GGTYAGNPIACA 306 (425)
T ss_pred hcC-CCCCE--EEEeccccCCCcceeeEecHHHH--hhcCCCCC------------------------CCCCCcCHHHHH
Confidence 111 13564 45569997444589999988873 33321110 01112222222
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC----CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL----PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~----~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
++.+.++.. ..+.+.++.+.+.+++.+.|. ..|.+.-+.. .+..+.+.+..+.+.. ....
T Consensus 307 a~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g----~G~~~~l~l~~~~~~~-------~p~~ 370 (425)
T PRK08088 307 AALAVLKVF-----EQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRG----LGAMIAIELFEDGDHS-------KPNA 370 (425)
T ss_pred HHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEec----cceEEEEEEecCCCCC-------CCCH
Confidence 222333322 122344444444444444443 3444322211 2334333332211000 0001
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.....+.+.+.+ .||.+.++.. .++.+|++++..++++|++..+++|+
T Consensus 371 ~~~~~l~~~~~~-~Gv~~~~~~~-------------------------------~~~~iRl~~~~~~t~~ei~~~i~~l~ 418 (425)
T PRK08088 371 KLTAQIVARARD-KGLILLSCGP-------------------------------YYNVLRILVPLTIEDAQIRQGLEIIA 418 (425)
T ss_pred HHHHHHHHHHHh-CCCEEecCCC-------------------------------CCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 124567777755 6988764211 13779999999999999999999999
Q ss_pred HHHHh
Q 043646 518 FIAAY 522 (625)
Q Consensus 518 ~~~~~ 522 (625)
+++..
T Consensus 419 ~~l~~ 423 (425)
T PRK08088 419 QCFDE 423 (425)
T ss_pred HHHHh
Confidence 98764
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-11 Score=135.08 Aligned_cols=368 Identities=13% Similarity=0.061 Sum_probs=199.9
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+ .|..++.|.+++.+++......... . ...+...++.+.|++++...-+
T Consensus 47 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~-~-----~~~~~~~~lae~L~~~~p~~~~ 117 (460)
T PRK06916 47 GRKLYDVNG---NEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLL-G-----LANVPSILLAEKLIEVVPEGLK 117 (460)
T ss_pred ccEEEeCCC---CEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCcccc-c-----cCCHHHHHHHHHHHHhCCCCCC
Confidence 445555545 34888644 3677899999999988653211110 0 1123445677888888753333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~ 207 (625)
.+.|+.||+++.-.++-.++.... . . =.++.+.+|.....+|.....++...|. .+..
T Consensus 118 -~v~f~~SGseAve~AlklAr~~~~-----~---~-g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~ 187 (460)
T PRK06916 118 -KVFYSDSGATAVEIAIKMAFQYWQ-----N---K-GKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIK 187 (460)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHHH-----h---c-CCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEE
Confidence 799998888874333322221000 0 0 0133332444455555544433332221 1233
Q ss_pred EecCCC------C------CCCHHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 208 IGLDDN------G------LLDIEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 208 v~~~~~------~------~ld~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
+|.... + .-+++.+++.+.. ..+++.+|++.. +....|.+.| +++|.++|++||+++|+|+
T Consensus 188 ~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DE 265 (460)
T PRK06916 188 MPYPYTYRSPYGNDKAEIVKKHLEELEELLKE--KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDE 265 (460)
T ss_pred eCCCcccccccCCChHHHHHHHHHHHHHHHHh--CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeec
Confidence 432210 0 0135667777752 235678888887 5777788754 7899999999999999999
Q ss_pred cCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
++. +|-... -....+. .+|+++++ |.+++.. .+|++++++++.. ...+.....+.+
T Consensus 266 V~TG~GRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~~Pi~av~~~~ei~~--~~~~~~~~~~~~--------------- 325 (460)
T PRK06916 266 VATGFGRTGKMFACEHENV-TPDIMTAG--KGLTGGYLPIAITVTTDEIYN--AFYGDYEEQKTF--------------- 325 (460)
T ss_pred hhhCCCcCchhhHHHhcCC-CCCeeeee--hhhhcCccccceeeecHHHHH--HhhccccccCcc---------------
Confidence 965 321110 0111111 57998876 9887542 4789999988732 221100000000
Q ss_pred chhhhhc-CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCC-
Q 043646 347 DIEEREN-GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN- 424 (625)
Q Consensus 347 ~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~- 424 (625)
..... .|.|-.+++..+.++.+ +. +.+.++.+.+.+++.+.|+++....+++.. ..++..+.+.+..+..
T Consensus 326 --~~~~T~~gnpl~~aaa~a~l~~l--~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rG~Glm~giel~~~~~~ 397 (460)
T PRK06916 326 --FHGHSYTGNPLGCAVALANLELY--EK---TNLIEQVARKTEYVATQLEDLFALKHVGDI-RQLGLMVGIELVKNKET 397 (460)
T ss_pred --ccCCCCCCCHHHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHhhcCCCeEEe-ecCCceeeEEeeccccc
Confidence 00001 13333333344555554 22 245667777777887777654221111111 1234445554432210
Q ss_pred CCCccccccCCCCCC-hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC
Q 043646 425 SSPENMKIERNKPLH-GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY 503 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~-~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~ 503 (625)
.+ ....... ...+...+.+ +||.+.+. ...+|+.+++.
T Consensus 398 ~~------~~~~~~~~~~~i~~~~~~-~Gvl~~~~----------------------------------g~~l~~~Ppl~ 436 (460)
T PRK06916 398 KE------PFEWTERVGVQVCKRSRE-LGMLTRPL----------------------------------GNTIVFMPPLA 436 (460)
T ss_pred cc------CCCchhhHHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEeCCcc
Confidence 00 0000001 2356666654 79988631 25699999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 043646 504 MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 504 ~t~edid~ll~aL~~~~~~~ 523 (625)
+|++|+++++++|++++.+.
T Consensus 437 it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 437 STIDELDEMLRILYKAISDV 456 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988753
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-11 Score=132.70 Aligned_cols=352 Identities=15% Similarity=0.085 Sum_probs=194.3
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+++..|+ -|+|..+ .|-.++.+.+++.+++.... ..... .. +.....++.++++++++..-+
T Consensus 37 ~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~-~~~~~-~~----~~~~~~~la~~l~~~~~~~~~- 106 (427)
T TIGR00508 37 VELTLDDGR---RLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMS-HVMFG-GF----THKPAIELCQKLVKMTPNALD- 106 (427)
T ss_pred eEEEeCCCC---EEEEccchHHHhcCCCCCHHHHHHHHHHHHhcC-Ccccc-cc----CCHHHHHHHHHHHhhCCCCCC-
Confidence 334444453 3788643 35677899999988875421 11110 00 112345566777777754333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVVE 207 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~ 207 (625)
.+.|+.+|+++.-..+-.++..... + =.++...+|.....+|.....++...+- .+..
T Consensus 107 ~v~f~~sGseA~e~AlklAr~~~~~---~------~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~ 177 (427)
T TIGR00508 107 CVFLADSGSVAVEVALKMALQYWQA---K------GEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIF 177 (427)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHh---h------CCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeE
Confidence 8899988888733333222210000 0 0123232455555555544433332221 1112
Q ss_pred EecCCC------CCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccc----cCHHHHHHHHHHcCCEEEEeccCc-CC
Q 043646 208 IGLDDN------GLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIY----SDTRSIARLLHQYGGFACFDFAAS-GP 275 (625)
Q Consensus 208 v~~~~~------~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~----~~l~~I~~la~~~g~~vivD~A~~-~g 275 (625)
++.... ..-|++++++++.+ ..++..+|++..+ +...|.+ ..+++|.++|++||+++|+|++|. +|
T Consensus 178 ~~~p~~~~~~~~~~~~~~~l~~~l~~--~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~G 255 (427)
T TIGR00508 178 APAPQNRFDEEWNEEAITPLAKLMEL--HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFG 255 (427)
T ss_pred cCCCCccccchhHHHHHHHHHHHHHh--cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 221111 01146777778763 2245778888876 5555654 448899999999999999999974 22
Q ss_pred Cccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc----ccCCceEEeeccccccccccccch
Q 043646 276 YVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS----TCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 276 ~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~----~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
.... -....+. .+|++++ .|.++|.. .++.++.++++.+ .+... ...+.+
T Consensus 256 r~G~~~~~~~~~v-~pDi~~~--gK~l~gG~~p~~a~~~~~~~~~--~~~~~~~~~~~~~~T------------------ 312 (427)
T TIGR00508 256 RTGKLFACEHAGV-VPDILCV--GKALTGGYMTLSATVTTDKVAQ--TISSGEAGCFMHGPT------------------ 312 (427)
T ss_pred cCCccchhhhcCC-CCCEEEe--chhhhcCcccceEEEEcHHHHH--HHhcCCCCccccCCC------------------
Confidence 2111 1111111 5788875 59986542 3577777777622 22110 000000
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 349 EERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 349 ~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
..|.|..++.+.++++.+. .. .+.++.+.+.+++.+.|+++.....++. ....+.++.+.+..+.
T Consensus 313 ----~~g~p~~~aaa~a~l~~l~--~~---~~~~~~~~~~~~l~~~L~~l~~~~~i~~-vrg~G~~~~i~~~~~~----- 377 (427)
T TIGR00508 313 ----FMGNPLACAVAEASLAILL--EG---EWQKQVSAIENQLKRELSPLRKNPVVKD-VRVLGAIGVVEMYKPV----- 377 (427)
T ss_pred ----CCcCHHHHHHHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHhhcCCCEEe-EeccccEEEEEECCcc-----
Confidence 1134444555556666552 21 3456777777788887766521111111 1224567766664321
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....+.+.|.+ .||.+.+. ...+|++++..+|++|
T Consensus 378 ----------~~~~~~~~l~~-~Gv~~~~~----------------------------------~~~l~~~ppl~~t~~~ 412 (427)
T TIGR00508 378 ----------NVEELQKKFVE-QGVWIRPF----------------------------------GKLIYVMPPYIITTEQ 412 (427)
T ss_pred ----------CHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEECCCCCCHHH
Confidence 24567777755 69988521 1469999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043646 509 FEFILAALEFIAAY 522 (625)
Q Consensus 509 id~ll~aL~~~~~~ 522 (625)
||++++++++.+++
T Consensus 413 id~~~~~l~~~l~~ 426 (427)
T TIGR00508 413 LQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-11 Score=133.20 Aligned_cols=356 Identities=14% Similarity=0.036 Sum_probs=198.2
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+++..| .-|+|..+ .|...+.|.+++.+++.... ..+.. + .......++.+.+++.+....+
T Consensus 45 ~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~-~~~~~-~----~~~~~~~~lae~L~~~~p~~~~- 114 (457)
T PRK05639 45 ALIEDVDG---NVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQ-HSMIG-Y----THSERAIRVAEKLAEISPIENP- 114 (457)
T ss_pred CEEEeCCC---CEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcc-ccccC-c----cCCHHHHHHHHHHHhhCCCCcC-
Confidence 44444444 35888743 45567899999999885421 11111 1 1123445677778887754333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcCC-------------eEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
.+.|+.||+.+.-.++-.++. -.|.. .|+. ...+|.....++...|. .++
T Consensus 115 ~v~f~~SGsEA~e~AlklAr~---------------~tgr~-~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~ 178 (457)
T PRK05639 115 KVLFGLSGSDAVDMAIKVSKF---------------STRRP-WILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVV 178 (457)
T ss_pred EEEEeCchHHHHHHHHHHHHH---------------hcCCC-eEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCce
Confidence 799998888874444433331 12222 3544 44555554433332221 244
Q ss_pred EEecCCCCC--------CCHH--------HHHHHHHHh-hhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCE
Q 043646 207 EIGLDDNGL--------LDIE--------ALRSQLELY-KAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGF 265 (625)
Q Consensus 207 ~v~~~~~~~--------ld~~--------~L~~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~ 265 (625)
.+|...... .+.+ .|++.+... ...+++.+|++..+....|.+.| +++|.++|++||++
T Consensus 179 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~l 258 (457)
T PRK05639 179 WIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGIL 258 (457)
T ss_pred EeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 555432110 1222 344443211 11356889999999888888766 78999999999999
Q ss_pred EEEeccCcC-CCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccc
Q 043646 266 ACFDFAASG-PYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 266 vivD~A~~~-g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
+|+|+++.. |-... .....+. .+|+++++ |.+++..++|++++++++.. .. .... +.+
T Consensus 259 lI~DEv~tG~GrtG~~~a~~~~gv-~PDiv~~g--K~l~gG~pi~av~~~~~i~~--~~-~~~~-~~T------------ 319 (457)
T PRK05639 259 LVMDEVQTGIGRTGKWFASEWFEV-KPDLIIFG--KGVASGMGLSGVIGRKELMD--LT-SGSA-LLT------------ 319 (457)
T ss_pred EEEechhhccCcCchHHHHHhcCC-CCCEEEec--hhhcCCCcceeEEehHHHHh--hc-CCCc-ccC------------
Confidence 999999762 21110 1111112 57999865 99976566799999988832 11 0000 000
Q ss_pred ccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC-CcEEEeCCCCCCCcceEEEEecc
Q 043646 343 LYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN-QNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l-~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
..|.|..+++..+.++.+. .+.+.++...+.+++++.|+++ ....+++.. ..++..+.+....
T Consensus 320 ----------~~g~p~~~aaa~a~l~~l~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~V-rG~Gl~~gve~~~ 383 (457)
T PRK05639 320 ----------PAANPVISAAAEATLEIIE-----EENLLKNALKVGEFIKKRLLEMKESFEVIGDV-RGKGLMIGVEIVK 383 (457)
T ss_pred ----------CCcCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHhCCCEEee-ccceeEEEEEEec
Confidence 1234444444445555552 2244556666677777776553 111112111 1133444443322
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~ 501 (625)
+.. ....-....+.+.+.+ +||.+.+. + . .+..+|++++
T Consensus 384 ~~~---------~~~~~~~~~~~~~~~~-~Gv~~~~~---g----~------------------------~~~~lr~~Pp 422 (457)
T PRK05639 384 ENG---------KPDPELTGKICWRAFE-LGLILPSY---G----M------------------------FGNVIRITPP 422 (457)
T ss_pred CCC---------CCCHHHHHHHHHHHHh-CCeEEeec---C----C------------------------CCCEEEEeCC
Confidence 110 0000012356666655 69998632 0 0 1368999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhh
Q 043646 502 YYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 502 ~~~t~edid~ll~aL~~~~~~~~ 524 (625)
+.+|++|+|+++++|++++....
T Consensus 423 l~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 423 LVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred CccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-11 Score=120.59 Aligned_cols=377 Identities=16% Similarity=0.114 Sum_probs=225.9
Q ss_pred CCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHH-HHHHhhCCCCCCCCCC-cchhhHHHHH
Q 043646 44 HPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIED-YIINNVLPFYGNTHTS-DSYVGQRMTK 121 (625)
Q Consensus 44 ~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~e-a~~~~l~~~~~n~~~~-~~~~~~~~~~ 121 (625)
..++..+..+.++++|+..--.. ....|+..+.....-|.|+. .+.+. +.|-.+-+. .-..+.+..+
T Consensus 52 ~~~~~~sE~e~l~~l~~ia~kN~---------~~~sfiG~GyY~~~~P~vI~rnile~--pewyTaYTPYQpEISQGrLq 120 (450)
T COG0403 52 PLPKPLSEYEALAELKEIASKNK---------VFTSFIGAGYYDTYTPPVILRNILEN--PEWYTAYTPYQPEISQGRLE 120 (450)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCc---------hhhhhccCcccCCcCcHHHHHHhhcC--ccccccCCCCchhhhhHHHH
Confidence 45555566788888887553221 11123444333433334433 44321 111111111 0123555666
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ- 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~- 200 (625)
..-+....++++.|.+-.+.-++ -++|++-..++.+.. +...++..|+++...|+.....++.
T Consensus 121 aLfefQtlv~dLTGm~VANASm~--DeaTAaAEAm~ma~r--------------~~k~k~~~~~V~~~vhpqt~~Vl~Tr 184 (450)
T COG0403 121 ALFEFQTLVADLTGLDVANASML--DEATAAAEAMLMAKR--------------VTKKKRNKFLVPKDVHPQTLDVLRTR 184 (450)
T ss_pred HHHHHHHHHHHHhCCCcccchhh--hhHHHHHHHHHHHHH--------------hhcCcCceEEecCCCCHHHHHHHHhh
Confidence 77788899999999986533444 356664444444442 2232233699999999999887765
Q ss_pred ---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc-cccCHHHHHHHHHHcCCEEEEecc-CcCC
Q 043646 201 ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG-IYSDTRSIARLLHQYGGFACFDFA-ASGP 275 (625)
Q Consensus 201 ---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG-~~~~l~~I~~la~~~g~~vivD~A-~~~g 275 (625)
.|.+++.++.+ |+++|+++ .+ +.+..+++..|+ ..| ...++++|.+.+|++|+++++=.= -+.+
T Consensus 185 a~~~g~~i~~~~~~-----d~~~l~~~-~~----~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~ 253 (450)
T COG0403 185 AEGLGIEIEVVDAD-----DLDDLESA-DD----GDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAADPLALG 253 (450)
T ss_pred cccCceEEEEeccc-----hhhhhhhc-cc----cCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEechhHhh
Confidence 36777777765 78888887 42 468889998886 667 667799999999999998776421 1111
Q ss_pred CccccCCCCCCCCCcEEEEcCCCC-----CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKF-----LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
.... .-++ |+|+++.+.+-+ ||||. +|++.+++++ .+.++-...| -+++....-......+-+..+-
T Consensus 254 LL~p-PGe~---GADIvvG~~QrfGvPmgfGGPh-ag~fA~~~~~--~R~mPGRlVG-~S~D~~G~~A~rLaLQTREQHI 325 (450)
T COG0403 254 LLKP-PGEF---GADIVVGSAQRFGVPMGFGGPH-AGYFAVKDEF--KRQMPGRLVG-VSVDAAGKRAFRLALQTREQHI 325 (450)
T ss_pred ccCC-cccc---CCceEEecCcccCCCcCCCCcc-eeeeeEhHhH--hhcCCCceee-eeecCCCCchhhhhHHHHHHHH
Confidence 1111 1122 899999988864 45566 7999999998 4566544443 2222211001112233344456
Q ss_pred hhcCCChhHHHH-----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCC
Q 043646 351 RENGGTPQIVQM-----IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 351 ~~~~gt~~~~~~-----~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
|.+..|.||+.. ..+++-.......|..+|..+.+.++.++.++|+++. |++++... -+-.|.+.-+.
T Consensus 326 RReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~-----fFdt~~v~~~~- 399 (450)
T COG0403 326 RREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDH-----FFDTFTVRVPE- 399 (450)
T ss_pred hhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEecccc-----ceeeEEEecch-
Confidence 677788887653 1222222233567888999999999999999999653 57776542 12222222110
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
-....+.+.. ...||.++.- .+..+-|++.-.+
T Consensus 400 -------------~~~~~l~~~~-~~~G~~L~~~---------------------------------~~~~~~ia~tEt~ 432 (450)
T COG0403 400 -------------EVAEALLAAA-IAGGINLRRV---------------------------------DADTVLIALTETT 432 (450)
T ss_pred -------------hHHHHHHHHH-HhcCCceeee---------------------------------cCCceEEEeeccc
Confidence 0022333333 2356666521 2356888998899
Q ss_pred CHHHHHHHHHHHHHH
Q 043646 505 SNEEFEFILAALEFI 519 (625)
Q Consensus 505 t~edid~ll~aL~~~ 519 (625)
|++||+.+++++...
T Consensus 433 t~~~i~~l~~~~~~~ 447 (450)
T COG0403 433 TKEDIDALVAAFGGV 447 (450)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999998754
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=132.69 Aligned_cols=352 Identities=12% Similarity=0.045 Sum_probs=192.9
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+ .|...+.|.+++.+++.... ..... ....+...++.++|++.....-+
T Consensus 31 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~-~~~~~-----~~~~~~~~~lae~L~~~~p~~~~ 101 (422)
T PRK05630 31 GVFLTLEDG---STVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMS-HVMFG-----GLTHEPAIKLTRKLLNLTDNGLD 101 (422)
T ss_pred eeEEEECCC---CEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCC-CcccC-----CcCCHHHHHHHHHHHhhCCCCcC
Confidence 444555544 45888643 46677899999999886431 11110 01223455677778777653333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv 206 (625)
.+.|+.||+++.-.++-.++.... . .-.++...+|.....+|.....++...+- .+.
T Consensus 102 -~v~f~~SGseA~e~AlklAr~~~~-----~----~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 171 (422)
T PRK05630 102 -HVFYSDSGSVSVEVAIKMALQYSK-----G----QGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQI 171 (422)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHHH-----h----cCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCe
Confidence 799998898873333322221000 0 00122222344444555544333322221 223
Q ss_pred EEecCCCCCCCH-------HHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCcC
Q 043646 207 EIGLDDNGLLDI-------EALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 207 ~v~~~~~~~ld~-------~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~ 274 (625)
.+|.......+. +.+++.+. +++.+|+++.. ....|.+.| +++|.++|++||+++|+|+++..
T Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG 246 (422)
T PRK05630 172 FAPAPPVRGSSPQEISEYLRSLELLID-----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATG 246 (422)
T ss_pred EcCCCcccCCChHHHHHHHHHHHHHHh-----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeC
Confidence 343321111122 33344443 46888888874 777787644 78999999999999999999742
Q ss_pred -CCccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 275 -PYVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 275 -g~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
|-... .....+. .+|+++++ |.+++. ..+|++++++++.. .+.... +.+.+. ..
T Consensus 247 ~GrtG~~~a~~~~gv-~PDi~t~g--K~l~gG~~p~~av~~~~~i~~--~~~~~~-~~~~~~----------------h~ 304 (422)
T PRK05630 247 FGRTGELFATLAAGV-TPDIMCVG--KALTGGFMSFAATLCTDKVAQ--LISTPN-GGGALM----------------HG 304 (422)
T ss_pred CCcCchhhHHHhcCC-CCCeeeee--chhhcCccccceeeccHHHHH--HHhccC-CCCccc----------------cC
Confidence 21110 0111111 57888765 999552 23588888888732 221100 000000 00
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 351 RENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
.-..|.|..++.+.++++.+. .. ...++.+++.+++.+.|+.+ |.+.-+ ..++.++.+.+....
T Consensus 305 ~T~~g~Pla~aaa~aaL~~l~--~~---~~~~~~~~~g~~l~~~L~~l~~~~~v~~v----Rg~Gl~~~ie~~~~~---- 371 (422)
T PRK05630 305 PTFMANPLACAVAHASLEIIE--TG---MWRKQVKRIEAELIAGLSPLAHLPGVADV----RVLGAIGVVEMEQPV---- 371 (422)
T ss_pred CCCcCCHHHHHHHHHHHHHHH--hC---cHHHHHHHHHHHHHHHHHHhhcCCCeeee----eccccEEEEEECCcc----
Confidence 001244555555556666652 21 33456666677777766543 322111 124566666553211
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
....+.+.+.+ +||.+++. .+.+||.+++.+|++
T Consensus 372 -----------~~~~~~~~~~~-~Gl~~~~~----------------------------------g~~l~~~PpL~it~~ 405 (422)
T PRK05630 372 -----------DMEEATQAAVD-HGVWLRPF----------------------------------GRLVYVMPPYITTSE 405 (422)
T ss_pred -----------cHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEECCccCCHH
Confidence 13467777755 79988631 157999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 043646 508 EFEFILAALEFIAAY 522 (625)
Q Consensus 508 did~ll~aL~~~~~~ 522 (625)
|+|+++++|++++..
T Consensus 406 ~i~~~~~~l~~al~~ 420 (422)
T PRK05630 406 QIAQICAALAAAVKA 420 (422)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-11 Score=130.26 Aligned_cols=342 Identities=15% Similarity=0.071 Sum_probs=193.1
Q ss_pred EeccCCC-----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 79 TYADHTA-----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 79 ~Yld~~~-----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
-|+|..+ .|...+.|.+++.+++....... . ....+...++.++|+++++...+ .+.|+++|+.+.-
T Consensus 73 ~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~------~~~~~~~~~lae~L~~~~p~~~~-~v~f~~sGseAve 144 (459)
T PRK06082 73 KYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP-R------RFTNETAIECAEKLTEIAGGELN-RVLFAPGGTSAIG 144 (459)
T ss_pred EEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc-C------ccCCHHHHHHHHHHHHhCCCCCC-EEEECCCcHHHHH
Confidence 4888653 35567899999999886432111 0 11235566788888888864333 7999978887733
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCCC-----CCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDDN-----GLL 216 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~~-----~~l 216 (625)
.++-.++. . .|...+|......|.....++...|. .+..+|.... ...
T Consensus 145 ~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK06082 145 MALKLARH--------------I-TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDA 209 (459)
T ss_pred HHHHHHHH--------------h-cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCCh
Confidence 33322221 1 22222455556667766555543332 1233332110 011
Q ss_pred C------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC-CCccc--cCCCC
Q 043646 217 D------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG-PYVKI--NLRSR 284 (625)
Q Consensus 217 d------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~-g~~~i--d~~~~ 284 (625)
| ++.|++.+.+. +++.+|++..+.+..+.+.| +++|.++|++||+++|+|+++.. |-... -...+
T Consensus 210 ~~~~~~~~~~l~~~i~~~---~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~ 286 (459)
T PRK06082 210 DGSDVHYADYLEYVIEKE---GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAY 286 (459)
T ss_pred hHHHHHHHHHHHHHHhcC---CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhh
Confidence 1 35577777531 46788999888776433455 89999999999999999999763 21110 11111
Q ss_pred CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH
Q 043646 285 NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI 363 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 363 (625)
+. .+|+++++ |.+++.. .+|++++++++.. ...... ...| ..|.|-.+++.
T Consensus 287 gv-~PDiv~~g--Kgl~gG~~P~~av~~~~~i~~--~~~~~~-~~~T----------------------~~gnpl~~aaa 338 (459)
T PRK06082 287 GI-EPDILCIG--KGLGGGLVPIAAMITKDKYNT--AAQISL-GHYT----------------------HEKSPLGCAAA 338 (459)
T ss_pred CC-CCCEEEec--ccccCCCCcceEEEEcHHHHh--hccCCC-CCCC----------------------CCcCHHHHHHH
Confidence 11 57998865 9997642 4688888887631 111000 0000 12334334444
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC--Ch
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL--HG 440 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l--~~ 440 (625)
.+.++.+ +. +.+.++.+++.+++.+.|+++.. ..+++.. ..++..+.+.+..+.. ..... ..
T Consensus 339 ~a~L~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rG~Gl~~~ve~~~~~~---------~~~~~~~~~ 403 (459)
T PRK06082 339 LATIEVI--EQ---EGLLEKVKADSQFMRERLLEMKAKYPLIGDV-RGIGLLWGVELVTDRH---------TKERAYDEA 403 (459)
T ss_pred HHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHhhCCCeeee-eeccceeEEEEccCcc---------ccCccHHHH
Confidence 4556555 22 24566777777777777755311 1111111 1234455555432210 00000 02
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
..+...+.+ +||.+.+. ..+.+|+++++.+|++|+|++++++++++
T Consensus 404 ~~~~~~~~~-~Gvl~~~~---------------------------------~~~~i~~~Ppl~it~~eid~~~~~l~~~l 449 (459)
T PRK06082 404 EAVLYRCLN-NGLSFKVS---------------------------------QGNVIQLSPPLIITREELTQALAILEEAI 449 (459)
T ss_pred HHHHHHHHh-CCCEEEec---------------------------------CCCEEEEeCCCccCHHHHHHHHHHHHHHH
Confidence 345555544 69887631 12679999999999999999999999998
Q ss_pred Hhh
Q 043646 521 AYG 523 (625)
Q Consensus 521 ~~~ 523 (625)
.+.
T Consensus 450 ~~~ 452 (459)
T PRK06082 450 AKI 452 (459)
T ss_pred HHH
Confidence 764
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-13 Score=126.90 Aligned_cols=286 Identities=16% Similarity=0.116 Sum_probs=180.9
Q ss_pred HHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEe
Q 043646 130 IKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIG 209 (625)
Q Consensus 130 ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~ 209 (625)
++.--+..++ .+.+ |.|+.+.|..++++. +.||.+ .|+..+++|.-+.......+++|+.+|
T Consensus 78 ~~~dkpLt~d-nic~-GvGsDE~ID~iiR~~---------------c~PGke-KIl~cPPtysMY~v~A~iNd~eVvkvp 139 (375)
T KOG0633|consen 78 LAQDKPLTSD-NICV-GVGSDELIDLIIRCV---------------CDPGKE-KILDCPPTYSMYVVDAAINDAEVVKVP 139 (375)
T ss_pred cccCCCCCcc-ceEE-ecCcHHHHHHHHhhe---------------ecCCcc-ceeecCCcceeEEEEeecCCceEEEec
Confidence 3333444455 5666 589999999998876 568844 488888787766555666799999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc-CCEEEEeccCcCCCccccC--C--CC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPYVKINL--R--SR 284 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~-g~~vivD~A~~~g~~~id~--~--~~ 284 (625)
++++..++.+++.+.+..+ ..+|++.+++|.||||.+.-.+.|.++.+-. +.+|++|+|+ +.+.- . .|
T Consensus 140 l~pdF~lnvdai~evl~~d---s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAY----idFsg~~S~~~l 212 (375)
T KOG0633|consen 140 LNPDFSLNVDAIAEVLELD---SKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAY----IDFSGVESRMKL 212 (375)
T ss_pred CCCCccccHHHHHHHHhcc---ccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeee----EeeccccccchH
Confidence 9999999999999999853 4799999999999999999999999988754 7999999992 22211 0 11
Q ss_pred CCCCCcEEE-EcCCCCCCCCC-CceEEEEeccccc-cCCCC-CcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 285 NIDGYDAIF-LATHKFLGGPG-TPGILLISKALYQ-LGSSP-PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 285 ~~~~~D~v~-~S~hK~lggp~-g~G~l~v~~~~~~-l~~~~-p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
.......++ -+++|.||-.+ .+|+.+.+..+.+ ++.++ |+. -+..
T Consensus 213 V~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPYN-------------------------------iS~~ 261 (375)
T KOG0633|consen 213 VKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPYN-------------------------------ISVA 261 (375)
T ss_pred hHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhccCCcc-------------------------------ccch
Confidence 111234443 47889987433 2677777766632 11111 110 0111
Q ss_pred HHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 361 QMIRAALAFWVK-EYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 361 ~~~~aal~~~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
+. .+|++.+.. ...-++..++.+.+-+.++...|.++|++. +.++. ....+...+..++ .++
T Consensus 262 ~s-~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~---daNFiLi~v~~~~------------n~~ 325 (375)
T KOG0633|consen 262 GS-VAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGS---DANFILIEVTGGD------------NGM 325 (375)
T ss_pred hH-HHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcc---cccEEEEEEcCCC------------cHH
Confidence 11 233433311 111255566666666778888998888775 23332 1223333333221 122
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
. ..+...+...+||.||- .+... + ..|++||++| |+|+.+.+++.+++
T Consensus 326 a-kkly~q~at~~gVvVRf---rgse~-----~--------------------c~G~lRitvG---t~EentvL~k~~K~ 373 (375)
T KOG0633|consen 326 A-KKLYKQDATKMGVVVRF---RGSEE-----G--------------------CKGYLRITVG---TPEENTVLMKCLKQ 373 (375)
T ss_pred H-HHHHHHHHHhcceEEEE---cCCcc-----c--------------------cceeEEEEcC---CcccchHHHHHHHh
Confidence 2 23333444668999982 11100 0 3599999999 88999999999986
Q ss_pred H
Q 043646 519 I 519 (625)
Q Consensus 519 ~ 519 (625)
+
T Consensus 374 ~ 374 (375)
T KOG0633|consen 374 F 374 (375)
T ss_pred h
Confidence 5
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-11 Score=133.30 Aligned_cols=357 Identities=15% Similarity=0.094 Sum_probs=199.5
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| ..|+|..+ .|...+.|.+++.+++......... ....+...++.++|++++....+
T Consensus 38 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~------~~~~~~~~~lae~L~~~~p~~~~ 108 (466)
T PRK07030 38 GVWLEDFEG---KRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILA------GFSHEPVIELSERLVKITPPGLS 108 (466)
T ss_pred ccEEEECCC---CEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcccc------ccCCHHHHHHHHHHHHhCCCCcC
Confidence 455555545 35888643 3566789999999988642111000 01234456677788887753333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~ 207 (625)
.|.|+.+|+.+.-.++-.++... +.+ -.++...+|.....+|.....++...|. .+..
T Consensus 109 -~v~f~~sGsEAve~AlKlAr~~~-----~~~----g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~ 178 (466)
T PRK07030 109 -RCFYADNGSSAIEVALKMSFHYW-----RNR----GKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIK 178 (466)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHH-----HHh----CCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEE
Confidence 89999888887433332222100 000 0123222344444555554444432221 1233
Q ss_pred EecCCC-----C-------CCCHHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 208 IGLDDN-----G-------LLDIEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 208 v~~~~~-----~-------~ld~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
+|.... + .-+++.+++.+.+ ..+++.+|++.. +....|.+.+ +++|.++|++||+++|+|+
T Consensus 179 ~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~--~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DE 256 (466)
T PRK07030 179 VPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE--HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDE 256 (466)
T ss_pred cCCCCccccccCCCHHHHHHHHHHHHHHHHHh--CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEee
Confidence 332210 0 0124566777762 235678888887 5777788755 7899999999999999999
Q ss_pred cCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc------ccCCceEEeecccccc
Q 043646 271 AAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS------TCGGGTVNYVNAFDEK 340 (625)
Q Consensus 271 A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~------~~ggg~v~~~~~~~~~ 340 (625)
++. +|-... ....++. .+|+++++ |.+++.. .+|++++++++.+ .+... ...++|
T Consensus 257 V~TGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl~gG~~Pi~av~~~~ei~~--~~~~~~~~~~~~~h~~T---------- 321 (466)
T PRK07030 257 IAVGFGRTGTMFACEQAGI-RPDFLCLS--KALTGGYLPLAAVLTTDTVYQ--AFYDDYPTLRAFLHSHS---------- 321 (466)
T ss_pred hhhCcCccccchHHHhcCC-CCCEEeee--hhccCCcccceEEEecHHHHH--HHhcccccccccccCCC----------
Confidence 965 332111 0111111 57999996 9887653 4789999988732 21100 000111
Q ss_pred ccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEE
Q 043646 341 DTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSF 417 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f 417 (625)
..|.|-.+++..+.++.+. .+.+.++.+.+.+++.+.|+++ |.+.-+ ..++..+.+
T Consensus 322 ------------~~gnpla~aaa~a~L~~i~-----~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~v----rG~Gl~~gi 380 (466)
T PRK07030 322 ------------YTGNPLACAAALATLDIFE-----QDNVIENNRALARRMAEATAHLADHPHVAEV----RQTGMILAI 380 (466)
T ss_pred ------------CCCCHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHhcCCCEEEe----EeceeEEEE
Confidence 1233433444445555552 2345667777777777777654 322211 123444555
Q ss_pred EeccCCCCCCccccccCCCCC--C---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 418 LVYSTTNSSPENMKIERNKPL--H---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l--~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
.+..+.. ...+. . ...+.+.+.+ +|+.+++.
T Consensus 381 e~~~~~~---------~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~---------------------------------- 416 (466)
T PRK07030 381 EMVQDKA---------SKTPYPWQERRGLKVYQHALE-RGALLRPL---------------------------------- 416 (466)
T ss_pred EeccCcc---------ccccCcchhHHHHHHHHHHHH-CCeEEEec----------------------------------
Confidence 4432210 00000 0 1346666654 69888631
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...+|+.+++.+|++|++++++++++.+.+.
T Consensus 417 g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 417 GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 1569999999999999999999999998875
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-11 Score=132.32 Aligned_cols=361 Identities=13% Similarity=0.012 Sum_probs=194.9
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ -|+|..+. |...+.|.+++.+++......... + ....+...++.++|++.+...-+
T Consensus 41 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~--~---~~~~~~~~~lae~L~~~~p~~~~ 112 (456)
T PRK07480 41 GVYLWDSEGN---KILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTF--F---KTTHPPAIELAAKLAEVAPPGFN 112 (456)
T ss_pred eeEEEeCCCC---EEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccc--c---ccCCHHHHHHHHHHHHhCCCCcC
Confidence 4555555553 48887443 566789999999988642111000 0 01234556677888888764333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHcCC------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQSLA------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~G~------------~vv 206 (625)
.+.|+.||+++.-.++-.++.... . . =.++. ..|+.- ..+|.....++...|. .+.
T Consensus 113 -~v~f~~SGseA~e~AlklAr~~~~-----~---~-g~~~r-~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~ 181 (456)
T PRK07480 113 -HVFFTNSGSEANDTVLRMVRHYWA-----L---K-GKPQK-KVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIV 181 (456)
T ss_pred -EEEEeCCcHHHHHHHHHHHHHHHH-----h---c-CCCCC-cEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCe
Confidence 899998888874443322221000 0 0 01222 235544 4455544433332221 112
Q ss_pred EEecCCCC----CCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 207 EIGLDDNG----LLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 207 ~v~~~~~~----~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
.++..... ..+ ++.|++.+.+ ...+++.+|++..+....|.+.| +++|.++|++||+++|+|+
T Consensus 182 ~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DE 260 (456)
T PRK07480 182 HIDQPYWFGEGGDMTPEEFGLAAARQLEAKILE-LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADE 260 (456)
T ss_pred ecCCCcccccccCCChHHHHHHHHHHHHHHHHh-cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 22211100 011 2555555532 12246789999998888898877 8999999999999999999
Q ss_pred cCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCC--CCc-ccCCceEEeeccccccccc
Q 043646 271 AAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSS--PPS-TCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 271 A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~--~p~-~~ggg~v~~~~~~~~~~~~ 343 (625)
++. +|-.. ......+. .+|+++++ |.+++.. .+|++++++++.. .+ .+. ...++|
T Consensus 261 V~tGfGRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~--~~~~~~~~~~~~~T------------- 322 (456)
T PRK07480 261 VICGFGRTGEWFGSQHFGI-KPDLMTIA--KGLTSGYIPMGAVGVGDRVAE--VLIEEGGEFNHGFT------------- 322 (456)
T ss_pred hhhCCCcCcchhhhhhcCC-CCCeeeee--hhhccCCccceEEEEcHHHHH--HHhcCCCCcccCCC-------------
Confidence 974 43221 11111111 57988876 9987532 3688888888732 11 110 011111
Q ss_pred cccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccC
Q 043646 344 YLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE-DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~-~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~ 422 (625)
..|.|..++...++++.+. .. .+.++. ..+.+++.+.|+++....+++.. ...+..+.+.+..+
T Consensus 323 ---------~~gnpl~~Aaa~a~L~~l~--~~---~l~~~~~~~~g~~l~~~l~~l~~~~~i~~v-rG~Glm~gie~~~~ 387 (456)
T PRK07480 323 ---------YSGHPVAAAVALANLRILR--DE---GIVERVRDDTGPYLQKRLRELADHPLVGEV-RGVGLVGAIELVKD 387 (456)
T ss_pred ---------CCcCHHHHHHHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHHhhcCCCeeeE-EeecceEEEEEecc
Confidence 1244544555556666652 22 344455 35555555555443111111110 11334444444322
Q ss_pred CCCCCccccccCCCCC-C----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 423 TNSSPENMKIERNKPL-H----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l-~----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.. ..... . ...+...+.+ +||.+.+ + .+.+|
T Consensus 388 ~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~---~-------------------------------~~~l~ 423 (456)
T PRK07480 388 KA---------TRERFEAGGGVGTICRDHCFA-NGLIMRA---V-------------------------------GDRMI 423 (456)
T ss_pred cc---------ccccCcchhhHHHHHHHHHHH-CCcEEee---c-------------------------------CCEEE
Confidence 10 00010 1 1345555544 6988852 1 15699
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 498 ITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+++++.+|++|+|+++++|++++.+.
T Consensus 424 ~~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 424 ISPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-11 Score=126.72 Aligned_cols=321 Identities=14% Similarity=0.115 Sum_probs=184.5
Q ss_pred CccccCCCCCCceEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ -|+|.. ..|..++.|.+++.+++...... +. .+ ..+...++.+.++++++. +
T Consensus 15 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~-~~-~~-----~~~~~~~la~~l~~~~~~--~ 82 (364)
T PRK04013 15 GIYVWDSQGR---RYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVA-GP-MF-----EHEEKEEMLEELSKWVNY--E 82 (364)
T ss_pred cCEEEECCCC---EEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCc-cC-Cc-----CCHHHHHHHHHHHhhcCC--C
Confidence 3445555553 488863 34566789999999988653211 11 01 134456677888888754 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh-HHHHHHc-------CC-----eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN-LLSWRQS-------LA-----EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~-------G~-----~vv 206 (625)
.++|+.||+.+.-..+-.+. ..+|.. .|+.....|+.. ...+... +. .+.
T Consensus 83 -~v~~~~SGseA~e~Alklar---------------~~~gr~-~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~ 145 (364)
T PRK04013 83 -YVYMGNSGTEAVEAALKFAR---------------LYTGRK-EIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFK 145 (364)
T ss_pred -EEEEeCchHHHHHHHHHHHH---------------HHhCCC-EEEEECCccccCchhhccCCCCcccccCCCCCCCCcE
Confidence 78998778776333332222 112322 355555444443 3332211 11 223
Q ss_pred EEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc-C---HHHHHHHHHHcCCEEEEeccCcCCCc--ccc
Q 043646 207 EIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS-D---TRSIARLLHQYGGFACFDFAASGPYV--KIN 280 (625)
Q Consensus 207 ~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~-~---l~~I~~la~~~g~~vivD~A~~~g~~--~id 280 (625)
.+|.+ |++.+++.+. +++++|++.......|.+. | +++|.++|++||+++|+|+++..--. ...
T Consensus 146 ~~~~~-----d~~~l~~~i~-----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a 215 (364)
T PRK04013 146 HIPFN-----DVEAAKEAIT-----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLA 215 (364)
T ss_pred EecCC-----CHHHHHHHhc-----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhH
Confidence 33322 6788888886 5789999999888878764 4 89999999999999999999763211 011
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
....+. .+|+++++ |.+++...+|+++.+.++. +.. .+.| ..|.|-.+
T Consensus 216 ~~~~gv-~PDiv~~g--K~lggG~P~~a~~~~~~~~------~~~-~~~T----------------------~~gnp~~~ 263 (364)
T PRK04013 216 IEHYKV-EPDIVTMG--KGIGNGVPVSLTLTNFDVE------RGK-HGST----------------------FGGNPLAC 263 (364)
T ss_pred HHhcCC-CCCEEEec--ccccCCceeEEEEeccccc------CCC-cCCC----------------------CCcCHHHH
Confidence 111111 57988886 9987644467777766541 111 1111 12344444
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
+...+.++.+ ++. .+.++.++. + ..+.. +.+ +.. ..++-.+.+.+..+ .
T Consensus 264 aaa~a~l~~i--~~~---~l~~~~~~~---l-~~l~~-~~v---~~v-RG~Gl~~gve~~~~-----------------~ 312 (364)
T PRK04013 264 KAVAVTLRIL--RRE---RLVEKAGEK---F-IEIKG-ERV---VTT-RGRGLMIGIVLKKP-----------------V 312 (364)
T ss_pred HHHHHHHHHH--Hhc---cHHHHHHHH---H-HHhcc-Ccc---eee-eeCcEEEEEEeCCc-----------------H
Confidence 4445556665 222 233333332 2 22322 221 111 11233344433211 2
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
..+.+.+.+ +|+.+++. ..+.+|+.+++..|++|++.++++|++++
T Consensus 313 ~~i~~~~~~-~Gll~~~~---------------------------------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l 358 (364)
T PRK04013 313 GKYVEELQN-RGYLVHTA---------------------------------GQRVIRLLPPLIISKDTMEEAKSAIEGVI 358 (364)
T ss_pred HHHHHHHHh-CCcEEeeC---------------------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHH
Confidence 356666655 79988631 12679999999999999999999999988
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
.+
T Consensus 359 ~~ 360 (364)
T PRK04013 359 ND 360 (364)
T ss_pred HH
Confidence 65
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=126.65 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=122.6
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..+. |...+.|.+++.+++.... ... ...+...++.+.|.+.++...+ .|.|+.+|+.+
T Consensus 53 ~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~------~~~~~~~~la~~L~~~~~~~~~-~v~f~~SGsEA 122 (433)
T PRK00615 53 KTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT---SYG------LTSEQEILFAEELFSYLGLEDH-KIRFVSSGTEA 122 (433)
T ss_pred CEEEEcccchhccccCCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHHhCCCCcC-EEEEeCchHHH
Confidence 357776433 5668899999998885421 110 0123455677777787754333 79999888887
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchh---HHHHHHcCCe---E-EEE--e-cCCC----CCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSN---LLSWRQSLAE---V-VEI--G-LDDN----GLL 216 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~---~~~~~~~G~~---v-v~v--~-~~~~----~~l 216 (625)
.-.++-.++. . .|.. .|+. ...+|... ..+....+.. . ... + .... ..-
T Consensus 123 ~e~AiklAr~--------------~-tgr~-~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (433)
T PRK00615 123 TMTAVRLARG--------------I-TGRS-IIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYN 186 (433)
T ss_pred HHHHHHHHHH--------------h-hCCC-EEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCC
Confidence 4444433331 1 2322 3444 44455433 1111111100 0 000 0 0000 122
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccCH----HHHHHHHHHcCCEEEEeccCcCCCcccc----CCCCCCCC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT----RSIARLLHQYGGFACFDFAASGPYVKIN----LRSRNIDG 288 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l----~~I~~la~~~g~~vivD~A~~~g~~~id----~~~~~~~~ 288 (625)
|+++|++.+.+. .+++.+|++..+....|.+.|. ++|.++|++||+++|+|+++. |. ... ....+. .
T Consensus 187 d~~~l~~~l~~~--~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~-R~G~~ga~~~~gv-~ 261 (433)
T PRK00615 187 DFQIFQTVMNSL--GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GF-RVAQGGAAAIYHV-K 261 (433)
T ss_pred CHHHHHHHHHhc--CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cc-cccHhHHHHhcCC-C
Confidence 788999988632 2467899999999999998874 599999999999999999984 32 111 011111 5
Q ss_pred CcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 289 YDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++ .|.+|+...+|++++++++
T Consensus 262 PDi~~~--gK~lggG~p~~av~~~~~i 286 (433)
T PRK00615 262 PDITVY--GKILGGGLPAAAVVAHKSI 286 (433)
T ss_pred CCeEEE--cccccCCcceeeeeecHHH
Confidence 788875 5999753336888888887
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-10 Score=124.35 Aligned_cols=364 Identities=14% Similarity=0.099 Sum_probs=193.6
Q ss_pred CCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-
Q 043646 65 NDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG- 137 (625)
Q Consensus 65 ~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~- 137 (625)
.+..+++..|+ -|+|..+ .|..++.|.+++.+++.... ..+. .....+...++.++|++++...
T Consensus 29 ~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~~ 99 (442)
T TIGR00709 29 QGCWVTDVEGK---EYLDFLAGAGTLALGHNHPNMKQKILDYLQSGL-PLHT-----LDLTTPLKDAFIEALLNIIPKRK 99 (442)
T ss_pred cccEEEeCCCC---EEEEccccHhhhcCCCCCHHHHHHHHHHHHhcc-Cccc-----cccCcHHHHHHHHHHHHhCCCcC
Confidence 34556665553 4888643 36678899999998885321 0111 0112345566778888887532
Q ss_pred CCCcEEE-eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------Ce
Q 043646 138 QADAIIF-CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AE 204 (625)
Q Consensus 138 ~~~~vif-t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~ 204 (625)
....++| +.+|+.+.-.++-.++. . +|.+.+|.....+|.....++...| ..
T Consensus 100 ~~~~~~f~~~sGsEA~e~AlklAr~--------------~-tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~ 164 (442)
T TIGR00709 100 MDYKLQFPGPSGADAVEAAIKLAKT--------------Y-TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPG 164 (442)
T ss_pred CCccEEEeCCCHHHHHHHHHHHHHH--------------h-cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCC
Confidence 1124444 45788874444333331 1 2322234444455555544443322 12
Q ss_pred EEEEecCCCCCC--------CHHH----HHHHHHHh-hhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEE
Q 043646 205 VVEIGLDDNGLL--------DIEA----LRSQLELY-KAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (625)
Q Consensus 205 vv~v~~~~~~~l--------d~~~----L~~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vi 267 (625)
+..++....... +.+. +++.+... ...+++.+|++..+.+..|.+.+ +++|.++|++||+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI 244 (442)
T TIGR00709 165 VQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLI 244 (442)
T ss_pred cEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 333433211111 1222 33333210 11135788888888888887754 7899999999999999
Q ss_pred EeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 268 FDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 268 vD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
+|+++. +|... ......+. .+|+++++ |.+++...+|+++++++. . ...+... ++|
T Consensus 245 ~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~g--K~l~~G~Pigav~~~~~~-~--~~~~~~~-~~T-------------- 303 (442)
T TIGR00709 245 LDEVQAGFGRSGTMFAFEHAGI-EPDFVVMS--KAVGGGLPLAVLLIAPEF-D--AWQPAGH-TGT-------------- 303 (442)
T ss_pred EeccccCCCCCCchhHHHHcCC-CCcEEEEc--ccccCCcccEEEEEchHH-h--ccCCCcC-CCC--------------
Confidence 999966 33221 11111111 57999865 999764458899988774 1 1111110 111
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCC
Q 043646 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 345 ~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
..|.|-...++.++++.+ +. +.+.++.+.+.+++.+.|+++. ...+++.. ...+..+.+....+.
T Consensus 304 --------~~gnpla~aaa~a~L~~i--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-rG~Gl~~~ie~~~~~ 369 (442)
T TIGR00709 304 --------FRGNQLAMVTGTEALNYW--KD---DNLAQNAQERGERITSFLDDMIKEHPCIGNV-RGRGLMQGIMIVDER 369 (442)
T ss_pred --------CCcCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeeee-eccceEEEEEEccCc
Confidence 123333333334455544 22 2455566666777777665431 11111111 123445555443221
Q ss_pred CCCCccccccCC-CC--C-ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 424 NSSPENMKIERN-KP--L-HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 424 ~~~~~~~~~~~~-~~--l-~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
.. ..... .. . -...+...+.+ +||.+.+... ..+.+|+.
T Consensus 370 ~~-----~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~-------------------------------~~~~l~~~ 412 (442)
T TIGR00709 370 QS-----KDATGAYPRDCELAAAIQGACFE-NGLLLETGGR-------------------------------EGEVFRLL 412 (442)
T ss_pred cc-----ccccccCCcchHHHHHHHHHHHH-CCeEEeecCC-------------------------------CCCEEEEE
Confidence 00 00000 00 0 02345666644 7998863211 13789999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
+++.+|++|++++++++++++.+..
T Consensus 413 Ppl~it~~ei~~~~~~l~~~l~~~~ 437 (442)
T TIGR00709 413 CPITIDQEECEEGISRFKQAVEEAL 437 (442)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-10 Score=127.00 Aligned_cols=334 Identities=17% Similarity=0.125 Sum_probs=188.3
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..+ .|...+.|.+++.+++.... +.. ...+...++.++|.+.+. .. +.+.|+.+|+.+
T Consensus 53 ~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~------~~~~~~~~la~~l~~~~p-~~-~~v~f~~sGseA 121 (428)
T PRK12389 53 NKYIDYLAAYGPIITGHAHPHITKAITEAAENGV---LYG------TPTELEIEFAKMLKEAIP-SL-EKVRFVNSGTEA 121 (428)
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhCC---ccC------CCCHHHHHHHHHHHHhCC-CC-cEEEEeCCHHHH
Confidence 35888533 34567899999999885421 110 012334567777777765 22 389999888887
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-------------------EEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-------------------VVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-------------------vv~v~~~~ 212 (625)
.-..+-.++. . .|...+|......|......+...|.. +..+|
T Consensus 122 ~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (428)
T PRK12389 122 VMTTIRVARA--------------Y-TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVP--- 183 (428)
T ss_pred HHHHHHHHHH--------------h-hCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcC---
Confidence 4444433331 1 232223444455555544444333311 11111
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcccc--CCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKIN--LRSRNI 286 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id--~~~~~~ 286 (625)
.-|++.+++.+.++ .+++.+|++..+.+..|.+.| +++|.++|++||+++|+|+++...-.... ....+.
T Consensus 184 --~~d~~~l~~~l~~~--~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv 259 (428)
T PRK12389 184 --FNDIEALKEALDKW--GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGV 259 (428)
T ss_pred --CCCHHHHHHHHHhc--CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCC
Confidence 12789999988732 246789999999999999988 99999999999999999999774311100 011111
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc--ccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS--TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR 364 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~--~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 364 (625)
.+|+++++ |.+++...+|++++++++. +.+.+. ...++| ..|.|..+++..
T Consensus 260 -~PDivt~g--K~lggG~Pi~av~~~~~i~--~~~~~~~~~~~~~T----------------------~~gnpl~~Aaal 312 (428)
T PRK12389 260 -EPDLTALG--KIIGGGLPIGAYGGRKDIM--EQVAPLGPAYQAGT----------------------MAGNPASMAAGI 312 (428)
T ss_pred -CCCeeeec--hhhcCCCceeEEeEHHHHH--hhhccCCCcccccC----------------------CccCHHHHHHHH
Confidence 57987665 9997644478888888873 333210 000011 123444444445
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
+.++.+ +. +.+.++.+++.+++++.|++ .+. +.+... .+++.+.+..+.... . ......+
T Consensus 313 a~L~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~-----~g~~gi~~~~~~~~~---~--~~~~~~~ 377 (428)
T PRK12389 313 ACLEVL--QQ---EGVYEKLDRLGAMLEEGILEAAEKHGITITINRL-----KGALTVYFTDEKVTN---Y--DQAERSD 377 (428)
T ss_pred HHHHHH--hc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEec-----CcEEEEEEeCCCCCC---h--hhhcccC
Confidence 556555 22 24566777777777777764 332 122221 234333332211000 0 0000001
Q ss_pred ---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 440 ---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 440 ---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
...+.+.|.+ +||.+.+.. .+.+. +.+.+|++|++++++++
T Consensus 378 ~~~~~~~~~~l~~-~Gv~~~~~~---------------------------------~~~~~--~~l~~t~e~id~~~~~l 421 (428)
T PRK12389 378 GEAFGKFFKLMLN-QGINLAPSK---------------------------------YEAWF--LTTAHTEEDIEETLEAV 421 (428)
T ss_pred HHHHHHHHHHHHH-CCcEeecCC---------------------------------CCCee--ecCCCCHHHHHHHHHHH
Confidence 2356666655 699887421 12233 45678999999999999
Q ss_pred HHHHHh
Q 043646 517 EFIAAY 522 (625)
Q Consensus 517 ~~~~~~ 522 (625)
++++.+
T Consensus 422 ~~~l~~ 427 (428)
T PRK12389 422 DRAFAQ 427 (428)
T ss_pred HHHHHh
Confidence 998754
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.3e-11 Score=128.24 Aligned_cols=364 Identities=12% Similarity=0.058 Sum_probs=195.0
Q ss_pred CCccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-
Q 043646 65 NDVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG- 137 (625)
Q Consensus 65 ~~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~- 137 (625)
.+..+++..|+ -|+|..+ .|...+.|.+++.+++......... .+ ..+...++.+.|.+++...
T Consensus 54 ~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~-~~-----~~~~~~~lae~L~~~~p~~~ 124 (472)
T PRK08742 54 EGAWLVGHDGR---RYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLA-GF-----THEPAVQLAEQLLAIAPRQD 124 (472)
T ss_pred ccCEEEeCCCC---EEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCcccc-cc-----CCHHHHHHHHHHHHhCCCcc
Confidence 34555555553 4888643 3567889999998887542111110 01 1233456777777776431
Q ss_pred ---CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------
Q 043646 138 ---QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA----------- 203 (625)
Q Consensus 138 ---~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~----------- 203 (625)
.-+.|.|+.+|+.++-.++-.++.... . .-+++...+|.....+|.....++...|.
T Consensus 125 ~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~-----~----~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~ 195 (472)
T PRK08742 125 GRAPLSKVFYADNGSAGVEVALKMAFHYFH-----N----RGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLL 195 (472)
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHHHH-----h----cCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCC
Confidence 123799998898874433322221000 0 00122222344444555554434332221
Q ss_pred -eEEEEecCCC-----C-------CCCHHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCE
Q 043646 204 -EVVEIGLDDN-----G-------LLDIEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGF 265 (625)
Q Consensus 204 -~vv~v~~~~~-----~-------~ld~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~ 265 (625)
.+..+|.... + ..+++.+++.+.. ..+++.+|++.. +....|.+.| ++++.++|++||++
T Consensus 196 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gil 273 (472)
T PRK08742 196 LESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ--SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAF 273 (472)
T ss_pred CCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1233333211 0 0125666777752 235678888887 4777788755 78999999999999
Q ss_pred EEEeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccc
Q 043646 266 ACFDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 266 vivD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (625)
+|+|+++. +|-.. ......+. .+|+++++ |.+++.. .+|++++++++.. .+.+... .+.+.
T Consensus 274 lI~DEV~TGfGRtG~~~a~e~~gv-~PDiv~~g--Kgl~gG~~Plaav~~~~ei~~--~~~~~~~-~~~~~--------- 338 (472)
T PRK08742 274 LIADEIATGFGRTGTLFACEQAGV-MPDLLCLS--KGLTGGFLPLSAVLATQQLYD--AFLDDSR-ERAFL--------- 338 (472)
T ss_pred EEEechhhCCCCCccchHHHhcCC-CCCEEEEc--ccccCCCCCcceeeccHHHHH--HhhccCc-cCccC---------
Confidence 99999965 33221 11111111 57999997 9996542 4788899988732 2111000 00000
Q ss_pred cccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC---CCCcEEEeCCCCCCCcceEEEE
Q 043646 342 TLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL---PNQNIQVLGNTSVKRQAILSFL 418 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~---~l~gv~v~~~~~~~~~~i~~f~ 418 (625)
...-..|.|-.+++..+.++++ +.. .+.++.+.+.+++.+.+. +.|.+.-+ ..++..+.+.
T Consensus 339 -------h~~T~~gnpl~~Aaa~a~L~~i--~~~---~l~~~~~~~g~~l~~~~~~~~~~~~i~dv----RG~Gl~~gie 402 (472)
T PRK08742 339 -------HSHSYTGNPLACAAALATLDIF--ADD---DVIARNQPTAARMTQLAAQIGEHPHVADV----RQAGMVVAFE 402 (472)
T ss_pred -------cCCCCCccHHHHHHHHHHHHHH--HHC---CHHHHHHHHHHHHHHHHHHHhcCCCeeeE----eccceEEEEE
Confidence 0000123343444444556655 222 344455555555554443 33333111 1133445554
Q ss_pred eccCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCC
Q 043646 419 VYSTTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKP 493 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~ 493 (625)
+..+.. ...... ...+.+.+.+ .||.+++. .
T Consensus 403 l~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~----------------------------------g 438 (472)
T PRK08742 403 LTRGGN---------KRTPFPPAARVGLHAYRAALA-RGVVLRPL----------------------------------G 438 (472)
T ss_pred eccCcc---------ccccCCchhHHHHHHHHHHHH-CCeEEEec----------------------------------C
Confidence 432210 001111 1345666655 69998631 2
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 494 GWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 494 g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+.|||.+++..|++|+++++++|++++.+.
T Consensus 439 ~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 439 DVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999988763
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-11 Score=130.74 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++.+..|+.+|++.. .+.+ +||+.+...+..++ +.+||. |++....|-|+..++.+
T Consensus 70 G~i~eAqe~aA~~fgAd~t--yFvv-NGTS~ank~vi~a~---------------~~~GD~--VLvdRN~HKSi~~glil 129 (557)
T COG1982 70 GPIKEAQELAARVFGADHT--YFVV-NGTSTANKAVINAV---------------LTPGDK--VLVDRNCHKSIHHGLIL 129 (557)
T ss_pred ccHHHHHHHHHHHhCCCce--EEEE-CCccHHHHHHHHhh---------------cCCCCE--EEecCCccHHHHHHHHH
Confidence 3567899999999999754 3444 89999999888877 689996 99999999999999999
Q ss_pred cCCeEEEEecCCC------CCCCHHHHHHHHHHhhhCCCC-eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc
Q 043646 201 SLAEVVEIGLDDN------GLLDIEALRSQLELYKAAKRP-MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 201 ~G~~vv~v~~~~~------~~ld~~~L~~~l~~~~~~~~~-~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~ 273 (625)
.|+..+++....+ +.++.+.+++++.++ +.- |+++++++ +..|++.++++|.+.++++++|+.+|++|.
T Consensus 130 aGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~---~~~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~ 205 (557)
T COG1982 130 AGATPVYLEPSRNPLYGIIGGIPLETFKEALLAH---PDAEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHP 205 (557)
T ss_pred cCCceEEecCCCCccccccCCCCHHHHHHHHHhC---hhhheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCc
Confidence 9999999865432 479999999988753 333 77777765 578999999999999999999999999987
Q ss_pred CCCccccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEecc-ccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 274 GPYVKINLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKA-LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 274 ~g~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
+-...-++..- ...+.|+++-|.||.+++-.-.+++.+++. .+ + +......-.
T Consensus 206 ~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~--~----------------------~~r~nea~~ 261 (557)
T COG1982 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAV--N----------------------HERFNEALM 261 (557)
T ss_pred ccccccccCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccC--C----------------------HHHHHHHHH
Confidence 53322222111 113789999999999987666677777652 10 0 000000011
Q ss_pred hhcCCChhHHHHHHHHHHHH--HHhhcCHHH---HHHHHHHHHHHHHHhhCCCCcEEEeCCCCC-CCcceEEEEeccCCC
Q 043646 351 RENGGTPQIVQMIRAALAFW--VKEYIGYEV---IKKQEDVYIESALGRILPNQNIQVLGNTSV-KRQAILSFLVYSTTN 424 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal~~~--~~~~~g~~~---i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~-~~~~i~~f~~~~~~~ 424 (625)
.....+|+..-+ |+++.. ..+..|.+. ..+...+.++.+++....++++.++.+... .....-.|.-+.++-
T Consensus 262 ~h~STSPsY~l~--ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~ 339 (557)
T COG1982 262 MHQSTSPSYPLM--ASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQ 339 (557)
T ss_pred HHccCCchHHHH--HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccc
Confidence 122333443332 222221 112334332 245666678888888888888888877520 000011111000000
Q ss_pred C--CCccccc-cCCCCCChHHHHHHhhhhcCeee
Q 043646 425 S--SPENMKI-ERNKPLHGPFVATLFNDLFGIQA 455 (625)
Q Consensus 425 ~--~~~~~~~-~~~~~l~~~~v~~~L~~~~gI~v 455 (625)
- +--+.++ -...|+.+..|.+.|.+ +||..
T Consensus 340 ~~lDP~Klti~tp~~Gipg~~v~~~L~e-~gii~ 372 (557)
T COG1982 340 YFLDPTKLTITTPEFGIPGAIVAKYLRE-HGIIP 372 (557)
T ss_pred eeccccEEEEecCCCCCcHHHHHHHHHH-cCCee
Confidence 0 0001111 12567888899999955 56654
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-10 Score=124.34 Aligned_cols=364 Identities=13% Similarity=0.056 Sum_probs=193.6
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ .|+|..+ .|-..+.|.+++.+++......... . ....+...++.++|+++++-..-
T Consensus 33 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~----~-~~~~~~~~~lae~L~~~~~~~~~ 104 (449)
T PRK07481 33 GVYVYDIDGK---KLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTF----D-GTTHPRAIELSYELIDMFAPEGM 104 (449)
T ss_pred ccEEEeCCCC---EEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecc----c-ccCCHHHHHHHHHHHHhcCCCCC
Confidence 4555555553 4888643 4566789999999888542111000 0 01224456677788888742222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~ 207 (625)
+.+.|+.+|+++.-.++-.++... +. . -+++...+|.....+|.....++...| ..+..
T Consensus 105 ~~v~f~~sGsEAve~AlklAr~~~-----~~---~-g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~ 175 (449)
T PRK07481 105 RRVFFSSGGSDSVETALKLARQYW-----KV---R-GQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFH 175 (449)
T ss_pred CEEEEcCchHHHHHHHHHHHHHHH-----Hh---c-CCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEE
Confidence 379999888887333332222100 00 0 012332234444455554433332111 11233
Q ss_pred EecCCC-----CCCCHHHH--------HHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEec
Q 043646 208 IGLDDN-----GLLDIEAL--------RSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 208 v~~~~~-----~~ld~~~L--------~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~ 270 (625)
++.... +..|++.+ ++.+.. ...+++.+|++..+....|.+.| +++|.++|++||+++|+|+
T Consensus 176 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~-~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DE 254 (449)
T PRK07481 176 VETPWLYRNPFTEQDPEELARICARLLEREIAF-QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADE 254 (449)
T ss_pred eCCCcccccccCCCCHHHHHHHHHHHHHHHHHh-cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEee
Confidence 332210 00144443 333331 12246889999999888898866 8899999999999999999
Q ss_pred cCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
++. +|-.. ......+. .+|+++++ |.+++.. .+|++++++++.. .+.+.....+.+
T Consensus 255 V~tGfGRtG~~~a~~~~gv-~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~--~~~~~~~~~~~~--------------- 314 (449)
T PRK07481 255 VVTGFGRTGSWFGSRGWGV-KPDIMCLA--KGITSGYVPLGATMVNARIAD--AFEANADFGGAI--------------- 314 (449)
T ss_pred hhhCcCcCchhhHhhhcCC-CCCEEEEe--ecccCCCcCceEEEEcHHHHH--HHhccCcccccc---------------
Confidence 965 32211 11111111 57999887 9987542 3688999988732 221110000000
Q ss_pred chhhhh-cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEecc
Q 043646 347 DIEERE-NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 347 ~~~~~~-~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
.... ..|.|-.+++..+.++.+ + .+.+.++.+.+.+++.+.|+++ +.+.-+ ...+..+.+.+..
T Consensus 315 --~h~~T~~gnpl~~aaa~a~L~~l--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rG~Glm~gi~l~~ 383 (449)
T PRK07481 315 --MHGYTYSGHPVACAAALATLDIV--V---REDLPANAAKRGAYLLEGLQPLKERFELVGDV----RGKGLMLALDLVA 383 (449)
T ss_pred --ccCCCCCCCHHHHHHHHHHHHHH--H---hhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEE----eecceEEEEEecc
Confidence 0000 123333333334455554 2 2345566666666776666543 322111 1133444444432
Q ss_pred CCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 422 TTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
+.. ...+.+ ...+...+.+ .||.+++. ...+
T Consensus 384 ~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~----------------------------------g~~i 419 (449)
T PRK07481 384 DKA---------TREPIDPSKGYANAVADVARE-NGVLVRPS----------------------------------GTKI 419 (449)
T ss_pred ccc---------ccCCCCchhHHHHHHHHHHHh-CCeEEEec----------------------------------CCEE
Confidence 110 001111 2346666644 69988631 1458
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~~ 522 (625)
||++++.+|++|+|+++++|++++.+
T Consensus 420 ~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 420 ILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998865
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-11 Score=129.04 Aligned_cols=341 Identities=13% Similarity=0.074 Sum_probs=185.2
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..+. |..++.|.+++.+++.... +. +. ......++.++|++++.. .+ .+.|+.+|+.+.
T Consensus 51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~---~~--~~----~~~~~~~la~~L~~~~~~-~~-~v~~~~sGseA~ 119 (426)
T PRK00062 51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL---SF--GA----PTELEVELAELVIELVPS-IE-MVRMVNSGTEAT 119 (426)
T ss_pred EEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC---cC--CC----CCHHHHHHHHHHHHhCCC-CC-EEEEecCHHHHH
Confidence 47776443 4678899999999886421 11 10 123445677888777632 33 788887788875
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecC--CCCCCCH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLD--DNGLLDI 218 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~--~~~~ld~ 218 (625)
...+-.++. ....++ +|......|......+...|. ..+.++.+ .--..|+
T Consensus 120 e~Aik~a~~--------------~~g~~~-ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 184 (426)
T PRK00062 120 MSAIRLARG--------------YTGRDK-IIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDL 184 (426)
T ss_pred HHHHHHHHH--------------HhCCCe-EEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCH
Confidence 555443331 111232 344445555543222222111 00000000 0012378
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc-cc-CCCCCCCCCcEE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK-IN-LRSRNIDGYDAI 292 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~-id-~~~~~~~~~D~v 292 (625)
+++++.+.+ ..+++.+|+++.+...+|.+.| +++|.++|++||+++++|+++...-.. .- ...++. .+|++
T Consensus 185 ~~l~~~i~~--~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~-~pDi~ 261 (426)
T PRK00062 185 EAVEELFEE--YGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGV-TPDLT 261 (426)
T ss_pred HHHHHHHHh--CCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCC-CcchH
Confidence 999998863 2246789999988888999988 899999999999999999998632110 00 001111 35754
Q ss_pred EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHH
Q 043646 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 293 ~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~ 372 (625)
++.|.+++...+|++++++++ .+.+.+. +... .+ .-..+.|.....+.++++.+
T Consensus 262 --~~gK~l~~G~p~ga~~~~~~i--~~~~~~~--~~~~-~~-----------------~T~~~~p~~~aaa~a~L~~~-- 315 (426)
T PRK00062 262 --TLGKIIGGGLPVGAFGGRREI--MEQLAPL--GPVY-QA-----------------GTLSGNPLAMAAGLATLKLL-- 315 (426)
T ss_pred --hhhhHhhCCCcceeeeEHHHH--HHhhccC--CCce-ec-----------------ccCcCCHHHHHHHHHHHHHH--
Confidence 456999743336888888877 3333210 0000 00 00123334444344555554
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhhCC----CCcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC--CChHHHHH
Q 043646 373 EYIGYEVIKKQEDVYIESALGRILP----NQNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP--LHGPFVAT 445 (625)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~--l~~~~v~~ 445 (625)
+. +.+.++.+.+.+++++.|.+ .+.+ .+- ..+.++.+.+.++.... .. ....+ -....+..
T Consensus 316 ~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr-----g~G~~~~i~l~~~~~~~---~~-~~~~~~~~~~~~i~~ 383 (426)
T PRK00062 316 KE---PGFYEELEALTKRLAEGLKEAAKKAGIPLTVN-----RVGSMFGLFFTDEPVTN---YA-DAKKSDTERFARFFH 383 (426)
T ss_pred hc---chHHHHHHHHHHHHHHHHHHHHHHcCCceEEE-----EecceEEEEEecCCCcc---hh-hhccccHHHHHHHHH
Confidence 21 13455666666666666643 3221 121 14566666654321000 00 00000 00135777
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|.+ +||.+.+.. .+.++++ ..+|++|+++++++|++++..
T Consensus 384 ~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~~ei~~~~~~l~~~l~~ 424 (426)
T PRK00062 384 AMLD-EGVYLAPSQ---------------------------------FEAGFVS--AAHTDEDIEKTLEAARKAFAA 424 (426)
T ss_pred HHHH-CCeEeecCC---------------------------------cCceeee--ccCCHHHHHHHHHHHHHHHHh
Confidence 7755 799986421 1346665 567999999999999998764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-10 Score=123.86 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHhhcCCC---c-cccC----CC------C-----CCceEeccCCC------CCcchHHHHHHHHHhhCC
Q 043646 49 KPSEEKLAWLRSQIIGND---V-EFDY----SF------G-----KRRLTYADHTA------SGRSLRYIEDYIINNVLP 103 (625)
Q Consensus 49 ~~~~~~~~~lr~~~~~~~---~-~~~~----p~------g-----~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~ 103 (625)
......+++.|+.+|+.- . .+.. |. | ....-|+|..+ .|..++.|.+++.+++..
T Consensus 51 ~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~ 130 (474)
T PLN02482 51 TKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKK 130 (474)
T ss_pred hHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhh
Confidence 456788888888888642 1 1111 10 1 12345888643 345678999999998864
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceE
Q 043646 104 FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWV 183 (625)
Q Consensus 104 ~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~ 183 (625)
.. +.. . ..+...++.++|++.+.. . +.+.|+.+|+.+....+-.++. . .|.+.+
T Consensus 131 ~~---~~~-~-----~~~~~~~lAe~l~~~~p~-~-~~v~f~~SGsEA~e~AlklAR~--------------~-tgr~~I 184 (474)
T PLN02482 131 GT---SFG-A-----PCLLENVLAEMVIDAVPS-V-EMVRFVNSGTEACMGVLRLARA--------------Y-TGREKI 184 (474)
T ss_pred CC---CCC-C-----CCHHHHHHHHHHHHhCCC-C-CEEEEeCChHHHHHHHHHHHHH--------------h-cCCCEE
Confidence 31 111 0 123445667777777753 2 3899998888885554433331 1 232223
Q ss_pred EEEcCCCCchhHHHHHHc-------------CC------eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 184 VFLGPYEHHSNLLSWRQS-------------LA------EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 184 Vlv~~~~h~s~~~~~~~~-------------G~------~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
|.....+|......+... |. .+..+|. -|+++|++.+.+ +.+++.+|++..+..
T Consensus 185 i~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~--~~~~iAavI~Epv~g 257 (474)
T PLN02482 185 IKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEA--NKGEIAAVILEPVVG 257 (474)
T ss_pred EEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHh--CCCceEEEEECCCCC
Confidence 333444555332111111 10 1122222 278999998873 234678999999999
Q ss_pred ccccccC----HHHHHHHHHHcCCEEEEeccCcCCCccccC----CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 245 VTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKINL----RSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 245 ~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id~----~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
..|.+.| +++|.++|++||+++|+|+++. |. .... ...+. .+|+++++ |.+|+...+|.++.++++
T Consensus 258 ~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-Gf-R~g~~ga~~~~gv-~PDi~t~g--K~lggG~Pigav~g~~ei 331 (474)
T PLN02482 258 NSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GF-RIAYGGAQEYFGI-TPDLTTLG--KVIGGGLPVGAYGGRREI 331 (474)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Ce-ecCcchHhHHhCC-CCCEEEec--chhhCCCceEEEEEcHHH
Confidence 9998877 5689999999999999999985 32 1111 01111 57887765 999764447888888887
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.6e-13 Score=138.54 Aligned_cols=194 Identities=20% Similarity=0.209 Sum_probs=134.5
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
+.+.+.+++.+... +.. ++.......++++++++++|.+ ..+|+.+||.++...+...+
T Consensus 7 ~~~~m~~a~~~a~~------gd~----~Yg~D~~~~~l~~~i~~l~g~e---~a~f~~sGT~An~~al~~~~-------- 65 (290)
T PF01212_consen 7 PTPAMLEAMAAANV------GDD----AYGEDPTTARLEERIAELFGKE---AALFVPSGTMANQLALRAHL-------- 65 (290)
T ss_dssp S-HHEEHHHHHTTS------B-C----CTTSSHHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHcccc------CCc----ccCCChhHHHHHHHHHHHcCCC---EEEEeCCCChHHHHHHHHHH--------
Confidence 44577777755332 111 1233456788999999999986 34688788888666654433
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHH--HH-HHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCeEEEEecccC
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLL--SW-RQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPMLGSFSACSN 244 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~-~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv~~~~~~n 244 (625)
+|++. |++....|..+.. +. ...|++++.++.+.+|.+|+++|++++.... +..++++|+++.++|
T Consensus 66 --------~~~~~--vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~ 135 (290)
T PF01212_consen 66 --------RPGES--VICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTE 135 (290)
T ss_dssp --------HTTEE--EEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBT
T ss_pred --------hcCCc--eeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCc
Confidence 46664 8888887765542 22 4479999999977669999999999998632 234689999999988
Q ss_pred cc-ccccC---HHHHHHHHHHcCCEEEEecc---CcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 245 VT-GIYSD---TRSIARLLHQYGGFACFDFA---ASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 245 ~T-G~~~~---l~~I~~la~~~g~~vivD~A---~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
.. |.+.+ +++|.++||+||+.+|+|+| .+..+....++++. .++|++++|++|.++.|.| ++|+.+++.
T Consensus 136 ~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~G-avl~~~~~~ 211 (290)
T PF01212_consen 136 LAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGG-AVLAGNKEF 211 (290)
T ss_dssp TTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSE-EEEEESHHH
T ss_pred CCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccc-eEEEechHH
Confidence 75 77765 67789999999999999998 22222223333221 3899999999999998887 888888885
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-10 Score=136.08 Aligned_cols=347 Identities=14% Similarity=0.094 Sum_probs=199.1
Q ss_pred eEeccCCC----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 78 LTYADHTA----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~~~----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
.-|+|..+ .|-..+.|.+++.+++.....+.. + ..+...++.+++++++....+ .+.|+.||+.++-
T Consensus 585 ~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~~---~-----~~~~~~elae~L~~~~p~~~~-~v~f~~SGsEA~e 655 (972)
T PRK06149 585 RSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNSR---F-----HYAAVAEFSERLAALAPDGLD-TVFLVNSGSEAND 655 (972)
T ss_pred CEEEECCCCccccCCCCHHHHHHHHHHHHhcccccc---c-----cCHHHHHHHHHHHHhCCCCcC-EEEEeCCchHHHH
Confidence 34777543 344678999999988864322210 1 224456778888888743233 7889888999855
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEEEEecCC--CC---C
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVVEIGLDD--NG---L 215 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~v~~~~--~~---~ 215 (625)
.++-.++. . .|.+.+|.+...+|.....+....+. .+..++... .+ .
T Consensus 656 ~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~ 720 (972)
T PRK06149 656 LAIRLAWA--------------A-SGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRG 720 (972)
T ss_pred HHHHHHHH--------------h-cCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCC
Confidence 55433331 1 23232455555566444322211110 122333221 11 1
Q ss_pred CC-----HHHHHHHHHHh-hhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccC-cCCCccc---cC
Q 043646 216 LD-----IEALRSQLELY-KAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAA-SGPYVKI---NL 281 (625)
Q Consensus 216 ld-----~~~L~~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~-~~g~~~i---d~ 281 (625)
.+ .+++++.+... ...+++.+|++..+....|.+.+ +++|.++|++||+++|+|+++ ++|-..- ..
T Consensus 721 ~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~ 800 (972)
T PRK06149 721 ADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGF 800 (972)
T ss_pred cccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhh
Confidence 12 34555555421 12246789999999888899988 999999999999999999998 4443221 11
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 282 RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
...+. .+|+++++ |.+|+...+|++++++++. +.+.+. +.+ -.- ..|.|-.++
T Consensus 801 e~~gv-~PDivt~g--K~lg~G~Pl~av~~~~~i~--~~~~~~----~~~-----------------~sT-~~gnP~~~a 853 (972)
T PRK06149 801 EQQGV-VPDIITMA--KGMGNGHPLGAVITRREIA--EALEAE----GYF-----------------FSS-TGGSPVSCR 853 (972)
T ss_pred hhcCC-CCCEEEec--ccccCCeeeEEEEEcHHHH--hhhccC----Ccc-----------------cCC-CCCCHHHHH
Confidence 11112 57998775 9997655579999998873 222210 000 000 134555555
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
+..+.++.+. . +.+.++.+.+.+++++.|.++ |.+..+. .++..+.+.+..+.... ....
T Consensus 854 aala~L~~i~--~---e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vr----G~Gl~~gvel~~~~~~~-------~~~~ 917 (972)
T PRK06149 854 IGMAVLDVLR--E---EKLQENARRVGDHLKARLEALADRHPLIGAVH----GMGLYLGVELVRDRQTL-------EPAT 917 (972)
T ss_pred HHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe----ecceEEEEEEecCcccC-------CCCh
Confidence 5556666652 2 245666666677777777543 3232221 13344444443211000 0000
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
-....+++.+.+ +||.+.+.. . ..+.+||.+++.+|++|+|+++++|+
T Consensus 918 ~~~~~i~~~l~~-~Gvl~~~~g-------~------------------------~~~vl~~~Ppl~it~~~id~~~~~l~ 965 (972)
T PRK06149 918 EETAAICDRLLE-LGVIMQPTG-------D------------------------HLNILKIKPPLCLDRESADFFVDMLD 965 (972)
T ss_pred HHHHHHHHHHHh-CCeEEeecC-------C------------------------CCCEEEEECCCcCCHHHHHHHHHHHH
Confidence 012457777765 699986421 0 13689999999999999999999999
Q ss_pred HHHHhh
Q 043646 518 FIAAYG 523 (625)
Q Consensus 518 ~~~~~~ 523 (625)
+++.++
T Consensus 966 ~~l~~~ 971 (972)
T PRK06149 966 RVLTEG 971 (972)
T ss_pred HHHHhh
Confidence 998764
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-10 Score=122.85 Aligned_cols=365 Identities=13% Similarity=0.060 Sum_probs=196.2
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..|+ -|+|..+ .|...+.|.+++.+++... ++.... ....+...++.++|++++....+
T Consensus 22 G~~l~D~dG~---~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~---~~~~~~---~~~~~~~~~lae~L~~~~p~~~~ 92 (447)
T PRK06917 22 GVYLYDQNGN---KYFDGSSGAVTAGIGHGVKEIADAIKEQAEEV---SFVYRS---QFTSEPAEKLAKKLSDLSPGDLN 92 (447)
T ss_pred eeEEEeCCCC---EEEECchhHHhccCCCCCHHHHHHHHHHHhhC---cCcccc---ccCCHHHHHHHHHHHHhCCCCCC
Confidence 4555555553 4888643 3567899999999988642 111000 01234456788888888754333
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHcCC------------eEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQSLA------------EVV 206 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~G~------------~vv 206 (625)
.+.|+.+|+.+.-.++-.++... +.+ -.++.. .|+.- ..+|.....++...+- .+.
T Consensus 93 -~v~f~~sGsEAve~AlklAr~~~-----~~r----g~t~r~-~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~ 161 (447)
T PRK06917 93 -WSFFVNSGSEANETAMKIAIQHF-----QER----GIQGKH-KILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYP 161 (447)
T ss_pred -EEEEeCChHHHHHHHHHHHHHHH-----Hhc----CCCCCC-EEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCe
Confidence 78998888887443333232100 000 012322 35444 4455544444432221 122
Q ss_pred EEecCCCCC------------CCHHHHHHHHHHhhhCCCCeEEEEecccCc-cccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDDNGL------------LDIEALRSQLELYKAAKRPMLGSFSACSNV-TGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~~~~------------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~-TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.++...... -+++.+++.+... ..+++.+|++...... -|.+.| +++|.++|++||+++|+|
T Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~-~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~D 240 (447)
T PRK06917 162 TISAPYCYRCPVQKVYPTCQLACATELETAIERI-GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIAD 240 (447)
T ss_pred EeCCCcccccccCCChHHHHHHHHHHHHHHHHhc-CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEe
Confidence 222111000 1245667777631 1135788888877654 356654 789999999999999999
Q ss_pred ccCcC-CCcccc--CCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc---ccCCceEEeecccccccc
Q 043646 270 FAASG-PYVKIN--LRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS---TCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 270 ~A~~~-g~~~id--~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~---~~ggg~v~~~~~~~~~~~ 342 (625)
+++.. |-...- ....+. .+|+++++ |.+++.. .+|++++++++.. .+.+. ...++|
T Consensus 241 Ev~tGfGRtG~~~a~~~~gv-~PDi~~~g--K~l~~G~~Pi~a~~~~~~i~~--~~~~~~~~~~~~~T------------ 303 (447)
T PRK06917 241 EVMTGLGRTGAMFAMEHWGV-EPDIMTLG--KGLGAGYTPIAATVVSDRVME--PILRGSRSIMSGHT------------ 303 (447)
T ss_pred chhhCcCcccchhhHHhcCC-CCCEEEee--ehhccCCcceEEEEEcHHHHH--HHhccCcccccccC------------
Confidence 99762 211110 011111 57988776 9997543 3688888888732 22110 001111
Q ss_pred ccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEE
Q 043646 343 LYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFL 418 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~ 418 (625)
..|.|..+++..+.++.+ +. +.+.++...+.+++.+.|.++ |.+.-+ ...+.++.+.
T Consensus 304 ----------~~gnpl~~aaa~a~l~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----rG~Gl~~~ie 364 (447)
T PRK06917 304 ----------LSANPLSAATALAVLEYM--EK---HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDV----RGKGLLIGVE 364 (447)
T ss_pred ----------CCCCHHHHHHHHHHHHHH--HH---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE----eecceEEEEE
Confidence 123343444444555554 22 234556666666666666543 322111 1134455554
Q ss_pred eccCCCCCCccccccCCCCC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCC
Q 043646 419 VYSTTNSSPENMKIERNKPL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKP 493 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~ 493 (625)
+..+.. ..... ....+...+.+ +||.+.+.... ..|...
T Consensus 365 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~--------------------------~~g~~~ 408 (447)
T PRK06917 365 FVADKK---------TKQPFSKSQAVASELISVAAK-NGLLLYPAVAG--------------------------QDGKEG 408 (447)
T ss_pred EeccCC---------cCCCCcchhHHHHHHHHHHHh-CCcEEEecccc--------------------------cCCCCC
Confidence 432210 00011 12356666655 79998742110 001123
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 494 GWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 494 g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+.+|+++++.+|++|+|+++++|.+++.+.
T Consensus 409 ~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 409 DAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999988764
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=121.12 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=132.9
Q ss_pred EeccCCCC-C-----cchHHHHHHHHHhhCC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 79 TYADHTAS-G-----RSLRYIEDYIINNVLP--FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~-~-----~~p~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
-|.|+..+ + ..++.|.+++.+.+.. .++. .++..-++.+.|.+.+..- +.|-|++|||.
T Consensus 54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~-----------Pte~Ei~~Aell~~~~p~~--e~vrfvnSGTE 120 (432)
T COG0001 54 EYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGA-----------PTELEVELAELLIERVPSI--EKVRFVNSGTE 120 (432)
T ss_pred EeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHhcCcc--cEEEEecchhH
Confidence 47776432 2 3478899999998853 1222 2344555668888888763 27889989999
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC--C-----------------eEEEEecC
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL--A-----------------EVVEIGLD 211 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G--~-----------------~vv~v~~~ 211 (625)
|.+..+-.+++.. ..++ +|.+...+|...-..+...| + .++.+|.+
T Consensus 121 AtmsAiRlARa~T--------------gR~k-IikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN 185 (432)
T COG0001 121 ATMSAIRLARAYT--------------GRDK-IIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN 185 (432)
T ss_pred HHHHHHHHHHHhh--------------CCCe-EEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC
Confidence 9887776655422 2232 45555566655543333222 1 34445544
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcccc-CCCC-C
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKIN-LRSR-N 285 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id-~~~~-~ 285 (625)
|++.+++++++ .+++..+|++..+...-|.+.| +++|.++|+++|+++|+|++...--.... ...+ +
T Consensus 186 -----D~~al~~~~~~--~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~g 258 (432)
T COG0001 186 -----DLEALEEAFEE--YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYG 258 (432)
T ss_pred -----CHHHHHHHHHH--cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccC
Confidence 89999999984 3457889999999988999977 68899999999999999998542211110 0010 0
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
. .+|+.+++ |.+||...+|++-.++++
T Consensus 259 i-~PDlttlG--KiIGGGlP~ga~gGr~ei 285 (432)
T COG0001 259 V-EPDLTTLG--KIIGGGLPIGAFGGRAEI 285 (432)
T ss_pred c-Ccchhhhh--hhhcCCcceeeeccHHHH
Confidence 1 45777666 999887778999999998
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-11 Score=126.39 Aligned_cols=361 Identities=16% Similarity=0.089 Sum_probs=205.1
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
+..+.+..|+ -|+|..++ |-..+.+.+++.+++... +.++.. .+.+...++.++|+++..-..
T Consensus 35 G~yl~d~~G~---r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~-------~t~~Pa~~LA~~L~~~aP~~~ 104 (449)
T COG0161 35 GVYLTDIDGR---RYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGG-------FTHEPAIELAEKLAELAPEGG 104 (449)
T ss_pred eeEEEeCCCC---EEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcc-------cCCchHHHHHHHHHHhCCCCC
Confidence 3455555453 47885543 334678999999888543 111211 112225667888888888432
Q ss_pred CCcEEEeCChHHH---HHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcC------------
Q 043646 139 ADAIIFCGAGTTA---AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSL------------ 202 (625)
Q Consensus 139 ~~~vift~sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G------------ 202 (625)
=+.|.|++|||++ +|+.+.+-.... =+|+ +..++. ...+|.+...++...|
T Consensus 105 l~~vFf~~sGSeAvEtAlKma~qY~~~~------------G~p~-r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~l 171 (449)
T COG0161 105 LDHVFFTDSGSEAVETALKMALQYWRAR------------GQPQ-RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPL 171 (449)
T ss_pred ccEEEEeCCchHHHHHHHHHHHHHHHhc------------CCCc-ceEEEEeccCcCcccchheeccCchhhhhhhcccc
Confidence 2389999999988 666665544211 1233 333444 4556666554433222
Q ss_pred -CeEEEEecCC------CCC------CCHHHHHHHHHHhhhCCCCeEEEEecccCc-cccccC----HHHHHHHHHHcCC
Q 043646 203 -AEVVEIGLDD------NGL------LDIEALRSQLELYKAAKRPMLGSFSACSNV-TGIYSD----TRSIARLLHQYGG 264 (625)
Q Consensus 203 -~~vv~v~~~~------~~~------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~-TG~~~~----l~~I~~la~~~g~ 264 (625)
..+..++... .+. -..++|++.|.++ ..++..++++..+..- .|.+.| +++|.++|++||+
T Consensus 172 l~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~-g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~I 250 (449)
T COG0161 172 LPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH-GPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGI 250 (449)
T ss_pred ccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc-CcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCc
Confidence 1222333221 111 2356677777742 1145678888887777 788766 7899999999999
Q ss_pred EEEEeccC-cCCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccc
Q 043646 265 FACFDFAA-SGPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 265 ~vivD~A~-~~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
++|+|++- ++|-.. +.....+. .+|+++++ |.+.+.+ .+|.++++++++. .+..-. .+.+
T Consensus 251 LlI~DEV~tGFGRTG~~FA~e~~gi-~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~--~~~~~~--~~~f--------- 314 (449)
T COG0161 251 LLIADEVATGFGRTGKMFACEHAGI-VPDILCLA--KGLTGGYLPLSAVLTSDRIYE--AFSDGD--AGAF--------- 314 (449)
T ss_pred EEEeecceeCCCcCchhhhhhhcCC-CCCeeeec--ccccccchhhHhHhhhHHHHH--HHhccc--CCee---------
Confidence 99999983 333211 11111111 57999988 9885443 3788888888843 211000 1110
Q ss_pred ccccccchhhhh-cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEE
Q 043646 341 DTLYLEDIEERE-NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFL 418 (625)
Q Consensus 341 ~~~~~~~~~~~~-~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~ 418 (625)
...+ ..|.|-.++...+.++++ + .+.+.++.+.+..++.+.|.+ +++...++.. ...+-+..+.
T Consensus 315 --------~HG~TYsghPlacAaAla~L~i~--e---~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV-R~~Gli~~iE 380 (449)
T COG0161 315 --------MHGHTYSGNPLACAAALANLDIL--E---EEDLLERVAEIGAYLQAGLQAALADHPLVGDV-RGLGLIGAIE 380 (449)
T ss_pred --------ccCCccccCHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHhcccCCcEEEe-eccceEEEEE
Confidence 0111 123343344444555555 2 235666777777788887775 3322233321 1123344444
Q ss_pred eccCCCCCCccccccCCCCCC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 419 VYSTTNSSPENMKIERNKPLH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
+..+.. ...++. ...+.+.+.+ .|+.+|+. ...
T Consensus 381 lv~d~~---------t~~~f~~~~~~~~~~~~~e-~Gl~iRp~----------------------------------g~~ 416 (449)
T COG0161 381 LVADKA---------TKTPFEARVGARVRAAALE-RGLLIRPL----------------------------------GDV 416 (449)
T ss_pred Eecccc---------cccchhhhHHHHHHHHHHH-CCeEEeec----------------------------------CCE
Confidence 443321 011111 2345555644 79999953 146
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 496 TRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
+=+++++..|++|++++++++++.+.+..
T Consensus 417 i~~~PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 417 IYLMPPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred EEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999987643
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-10 Score=122.82 Aligned_cols=365 Identities=13% Similarity=0.070 Sum_probs=197.0
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
+..+++..| .-|+|..+ .|..++.|.+++.+++.... .++.. ...+...++.++|++++....
T Consensus 21 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~-------~~~~~~~~lae~L~~~~p~~~ 90 (443)
T PRK07483 21 GIYLIDATG---KRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSF-------FTTEPAEALADRLVAAAPAGL 90 (443)
T ss_pred EEEEEeCCC---CEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccc-------cCCHHHHHHHHHHHHhCCCCC
Confidence 455555545 34888654 45678899999999886431 11110 112344567778887765333
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEE
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVV 206 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv 206 (625)
+ .+.|+.+|+.+.-.++-.++.... . . -+++...+|.....+|.....++...|- .+.
T Consensus 91 ~-~v~f~~sGsEAve~AlklAr~~~~-----~---~-g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~ 160 (443)
T PRK07483 91 E-HVYFVSGGSEAVEAALKLARQYFV-----E---I-GQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAH 160 (443)
T ss_pred C-EEEEcCCcHHHHHHHHHHHHHHHH-----h---c-CCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCE
Confidence 3 799998888873333322221000 0 0 0133222344455566655444432211 122
Q ss_pred EEecCCCCC-C------------CHHHHHHHHHHhhhCCCCeEEEEecccC-ccccccC----HHHHHHHHHHcCCEEEE
Q 043646 207 EIGLDDNGL-L------------DIEALRSQLELYKAAKRPMLGSFSACSN-VTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 207 ~v~~~~~~~-l------------d~~~L~~~l~~~~~~~~~~lv~~~~~~n-~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
.++...... . .++++++++.. ...+++.+|++..+.. ..|.+.| +++|.++|++||+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~ 239 (443)
T PRK07483 161 HVSPCYAYREQRAGESDEAYGQRLADELEAKILE-LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLIL 239 (443)
T ss_pred EeCCCccccccccCCCHHHHHHHHHHHHHHHHHh-cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEE
Confidence 333211000 0 12556665542 1224678888888775 3577765 78999999999999999
Q ss_pred eccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCc---ccCCceEEeeccccccc
Q 043646 269 DFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPS---TCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 269 D~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~---~~ggg~v~~~~~~~~~~ 341 (625)
|+++. +|-.. ......+. .+|+++++ |.+++.. .+|++++++++.+ .+.+. ...++|
T Consensus 240 DEV~tGfGRtG~~~a~~~~gv-~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~--~~~~~~~~~~h~~T----------- 303 (443)
T PRK07483 240 DEVMCGMGRTGTLFACEEDGV-APDLVTIA--KGLGAGYQPIGAVLASDRIYD--AIADGSGFFQHGHT----------- 303 (443)
T ss_pred ecceeCcccCcHHHHHhhcCC-CCCeeeeh--hhhccCccccEEEEEcHHHHH--HHhcCCCccccCCC-----------
Confidence 99965 32211 00111111 57999886 9987653 4799999988732 22110 001111
Q ss_pred cccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEE
Q 043646 342 TLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSF 417 (625)
Q Consensus 342 ~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f 417 (625)
..|.|-.+.+..+.++.+. . +.+.++...+.+++.+.|++ .|.+.-+ ..++..+.+
T Consensus 304 -----------~~gnpl~~aaa~a~l~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v----RG~Glm~gi 363 (443)
T PRK07483 304 -----------YLGHATACAAALAVQRVIA--E---DGLLANVRARGEQLRARLRERLGQHPHVGDI----RGRGLFVGV 363 (443)
T ss_pred -----------CCCCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeE----eecccEEEE
Confidence 1233333344445555552 2 24555666666666666643 3322111 113445555
Q ss_pred EeccCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 418 LVYSTTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
.+..+.. ...+.+ ...+.+.+.+ +||.+.+...+. +|..
T Consensus 364 e~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~~~~~--------------------------~~~~ 407 (443)
T PRK07483 364 ELVADRA---------TKAPFDPALKLHARIKREAMA-RGLMVYPMGGTI--------------------------DGVR 407 (443)
T ss_pred EEeeccc---------ccCCCCchhhHHHHHHHHHHH-CCcEEEecCccc--------------------------cCCC
Confidence 4432210 000110 2356666655 799987421110 0001
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++.+|+.+++..|++|+|+++++|++++.+.
T Consensus 408 ~~~l~~~PpL~it~~eid~~~~~l~~~l~~~ 438 (443)
T PRK07483 408 GDHVLLAPPFIITAAQIDEIVERLGDAIDAA 438 (443)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999988653
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-10 Score=136.06 Aligned_cols=345 Identities=17% Similarity=0.155 Sum_probs=197.0
Q ss_pred eEeccC----CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 78 LTYADH----TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~----~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
.-|+|. ...|-..+.|.+++.+++... +.++. + ..+...++.++|++.+...-+ .+.|+.||+.|+-
T Consensus 624 ~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l--~~~~~-~-----~~~~~~~lAe~L~~~~p~~~~-~v~f~nSGsEA~e 694 (1013)
T PRK06148 624 RAYLDCFNNVCHVGHAHPRVVAAAARQAARL--NTNTR-Y-----LHDAIVAYAERLTATLPDGLT-VAFFVNSGSEANS 694 (1013)
T ss_pred CEEEEcccChhhcCCCCHHHHHHHHHHHhhc--CCcCC-c-----CCHHHHHHHHHHHHhCCCCcC-EEEEeCCcHHHHH
Confidence 458886 345667889999999988653 22221 1 133455677777777753333 7899988988844
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCC--CCC---C
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDD--NGL---L 216 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~--~~~---l 216 (625)
.++-.++. -.|.+.+|.....+|.....++...+ ..+..++... ... .
T Consensus 695 ~AlklAr~---------------~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 759 (1013)
T PRK06148 695 LALRLARA---------------HTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWP 759 (1013)
T ss_pred HHHHHHHH---------------hcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCC
Confidence 44433331 12333244444555554433222111 1122222110 000 1
Q ss_pred C-------HHHHHHHHHHh-hhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc---cc
Q 043646 217 D-------IEALRSQLELY-KAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK---IN 280 (625)
Q Consensus 217 d-------~~~L~~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~---id 280 (625)
+ .+.+++.+..- ...+.+.+|++..+....|.+.| +++|.++|++||+++|+|+++. +|-.. ..
T Consensus 760 ~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a 839 (1013)
T PRK06148 760 DAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWA 839 (1013)
T ss_pred hhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchh
Confidence 1 13455555421 11246889999988888898877 8999999999999999999974 33221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
....+. .+|+++++ |.+|+...+|++++++++. +.+.+....++| ..|.|-.+
T Consensus 840 ~e~~gv-~PDivt~g--K~lggG~Plgav~~~~ei~--~~~~~g~~~~~T----------------------f~gnpla~ 892 (1013)
T PRK06148 840 FETQGV-VPDIVTMG--KPIGNGHPMGAVVTTREIA--DSFDNGMEYFNT----------------------FGGNPVSC 892 (1013)
T ss_pred hhhcCC-Ccceeeec--ccccCCcceEEEEEcHHHH--hhccCCCccccC----------------------CCCCHHHH
Confidence 111111 57998886 9997766689999998883 222211000011 12334444
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
++..+.++.+ + .+.+.++.+++.+++++.|+++ |.+ .+-+ .+..+.+.+..+.. ..
T Consensus 893 aaa~a~L~~i--~---~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG-----~Gl~~gvel~~~~~---------~~ 953 (1013)
T PRK06148 893 AIGLAVLDII--E---DEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRG-----MGLFLGIELVTDRK---------TK 953 (1013)
T ss_pred HHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHHhCCCceEEee-----eceEEEEEecCCcc---------cc
Confidence 4444555554 2 2245566667777777776543 322 1211 23444444432210 00
Q ss_pred CC--CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 436 KP--LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 436 ~~--l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
.+ -....+...+.+ +||.+.+. + + ....+||.+++.+|++|+|+++
T Consensus 954 ~~~~~~~~~i~~~~~~-~Gvl~~~~---g-~---------------------------~~~vlr~~Ppl~it~~~id~~l 1001 (1013)
T PRK06148 954 APATAIARYVKNGARE-RGILIGTE---G-P---------------------------HDNVLKIRPPLIFSRADADHLL 1001 (1013)
T ss_pred CccHHHHHHHHHHHHh-CCeEEecc---C-C---------------------------CCCEEEEeCCccCCHHHHHHHH
Confidence 00 012356666755 79998631 1 1 1378999999999999999999
Q ss_pred HHHHHHHHhhh
Q 043646 514 AALEFIAAYGH 524 (625)
Q Consensus 514 ~aL~~~~~~~~ 524 (625)
++|++++.+.+
T Consensus 1002 ~~l~~~l~~~~ 1012 (1013)
T PRK06148 1002 EVLDDVLAAAL 1012 (1013)
T ss_pred HHHHHHHHHHh
Confidence 99999987643
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-10 Score=118.07 Aligned_cols=323 Identities=14% Similarity=0.041 Sum_probs=187.1
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
-|..+++.....+....+ ..+.|..+.+..-+.+.+.+.|.+.=|.+.+ +.|.+| +|++.++..++..+.
T Consensus 87 fp~Dai~RA~~~L~~~gG--s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT-~GAS~ai~~il~l~~------ 157 (475)
T KOG0258|consen 87 FPTDAIKRAKRILNDCGG--SLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLT-TGASPAIRSILSLLI------ 157 (475)
T ss_pred CCHHHHHHHHHHHHhcCC--cccccccccCChhHHHHHHHHHHhccCCCCCHHHeeec-CCCcHHHHHHHHHHh------
Confidence 455666665555544333 3333434444444455555555555553221 267777 789998999888773
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
-.+.+. |+++-+-|+-+-..+...|+..+.+-+++ ++.+|.++|++.+.+.+..-+++++++-+|-||
T Consensus 158 --------~~~~~G--vliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNP 227 (475)
T KOG0258|consen 158 --------AGKKTG--VLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNP 227 (475)
T ss_pred --------cCCCCc--eEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCc
Confidence 124444 99999999988878888898887777776 679999999999987664457899999999999
Q ss_pred ccccc---CHHHHHHHHHHcCCEEEEeccCc-----CCCcccc-------CCCCCCCCCcEEE-EcCCCCCCC---CCCc
Q 043646 246 TGIYS---DTRSIARLLHQYGGFACFDFAAS-----GPYVKIN-------LRSRNIDGYDAIF-LATHKFLGG---PGTP 306 (625)
Q Consensus 246 TG~~~---~l~~I~~la~~~g~~vivD~A~~-----~g~~~id-------~~~~~~~~~D~v~-~S~hK~lgg---p~g~ 306 (625)
||.+. .+++|..+|+++|++++.|+++- .+..... |.....+.+-.++ .|.||.+.| +.|
T Consensus 228 TGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG- 306 (475)
T KOG0258|consen 228 TGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG- 306 (475)
T ss_pred cchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC-
Confidence 99984 47889999999999999999832 1111111 1111011222233 256777632 333
Q ss_pred eEEEEeccc-------cccCC--CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 307 GILLISKAL-------YQLGS--SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 307 G~l~v~~~~-------~~l~~--~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
|++=+-+.. .++.. +.|...|---++.+ ...-..|.+++-... .+ .
T Consensus 307 GYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~--------------VnPP~Pgd~Sy~~~~--------~E---k 361 (475)
T KOG0258|consen 307 GYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLV--------------VNPPKPGDPSYDLFS--------SE---K 361 (475)
T ss_pred CeeecccCChhHHHHHHHHHhhhhcCCccchhhhcee--------------cCCCCCCCcchhhhh--------hh---h
Confidence 555332111 00000 11111110000000 000011222222211 12 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh-HHHHHHhhhhcCeeee
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG-PFVATLFNDLFGIQAR 456 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~-~~v~~~L~~~~gI~v~ 456 (625)
+.|.+..+..++.+.+.++.++|+.+..+ +++.+.|-...-... ...-.+..++.+ .+.+..|++.-||.+.
T Consensus 362 d~il~~l~~ra~l~~~~~ns~~gi~cn~~----qGAMY~fP~i~lP~k---aie~A~~~~~~PD~FYc~~LLe~tGIcvV 434 (475)
T KOG0258|consen 362 DGILSSLRSRAKLTEDAFNSLEGISCNPV----QGAMYLFPQISLPPK---AIEAAKALGIAPDEFYCLKLLEATGICVV 434 (475)
T ss_pred HhHHHHHHHHhHHHHHHHhhcCceeeccC----ccceeecccccCCHH---HHHHHHHhCCCCcHHHHHHHHHhcCeEEe
Confidence 34555566667888999999999998766 456666643221100 000012233333 4567788899999999
Q ss_pred cCCCCCc
Q 043646 457 GGCACAG 463 (625)
Q Consensus 457 ~G~~~~~ 463 (625)
+|+.|+.
T Consensus 435 PGSGFGQ 441 (475)
T KOG0258|consen 435 PGSGFGQ 441 (475)
T ss_pred cCCCCCC
Confidence 9998874
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-10 Score=123.92 Aligned_cols=227 Identities=14% Similarity=0.072 Sum_probs=138.2
Q ss_pred CChHHHHHHHHHhhcCCC-c----cccCCC--------C-----CCceEeccCCC------CCcchHHHHHHHHHhhCCC
Q 043646 49 KPSEEKLAWLRSQIIGND-V----EFDYSF--------G-----KRRLTYADHTA------SGRSLRYIEDYIINNVLPF 104 (625)
Q Consensus 49 ~~~~~~~~~lr~~~~~~~-~----~~~~p~--------g-----~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~ 104 (625)
..+...+++.|+.+|+.. . .+..|+ | ....-|+|..+ .|...+.|.+++.+++...
T Consensus 28 ~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~ 107 (453)
T PRK07046 28 PRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRG 107 (453)
T ss_pred hhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhC
Confidence 345677788888887642 1 111122 1 12345888532 3455689999999988542
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEE
Q 043646 105 YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184 (625)
Q Consensus 105 ~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~V 184 (625)
. ... ...+...++.+.|++.++. + .|.|+.|||.+...++-.++. . .|.+.+|
T Consensus 108 ~---~~~------~~~~~~~~lAe~l~~~~~~--~-~v~F~nSGtEA~e~AlrlAR~--------------~-TGr~~ii 160 (453)
T PRK07046 108 L---TTM------LPSEDAAWVGEELARRFGL--P-YWQVATTATDANRFVLRWARA--------------V-TGRPKIL 160 (453)
T ss_pred C---CCC------CCCHHHHHHHHHHHHHhCC--C-EEEEECCHHHHHHHHHHHHHH--------------h-hCCCEEE
Confidence 1 110 0124455677778787752 3 799998999886655544442 1 2322233
Q ss_pred EEcCCCCchhHHHHHH--c----------CC------eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 185 FLGPYEHHSNLLSWRQ--S----------LA------EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 185 lv~~~~h~s~~~~~~~--~----------G~------~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
-....+|......+.. . |. .+..++. -|++++++.+.. ++..+|++.......
T Consensus 161 ~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~----~~vAavi~EPi~g~~ 231 (453)
T PRK07046 161 VFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALAD----GDVAAVLAEPAMTNI 231 (453)
T ss_pred EECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhCC----CCeEEEEECCCCCCC
Confidence 3444455542211111 0 11 1122221 278999988852 468899999888888
Q ss_pred ccccC----HHHHHHHHHHcCCEEEEeccCcC--CCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 247 GIYSD----TRSIARLLHQYGGFACFDFAASG--PYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 247 G~~~~----l~~I~~la~~~g~~vivD~A~~~--g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
|.+.| +++|.++|++||+++|+|+++.+ |.-... ..++. .+|+++++ |.+|+...+|++++++++
T Consensus 232 G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~-~~~gv-~PDi~t~g--K~lggG~Pi~av~g~~~i 302 (453)
T PRK07046 232 GMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT-RAHGL-EPDFLVVG--KPIAGGVPCAVYGFSAEL 302 (453)
T ss_pred CCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh-HHhCC-Cccceeeh--hhhcCCCcceeeeehHHH
Confidence 88866 79999999999999999999852 111110 11111 57988865 999765568999999887
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-10 Score=121.31 Aligned_cols=361 Identities=15% Similarity=0.097 Sum_probs=194.0
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC-
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ- 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~- 138 (625)
+..+++..| ..|+|..+ .|..++.|.+++.+++...... +.. ....+...++.+++.+.+...-
T Consensus 54 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~-~~~-----~~~~~~~~~la~~L~~~~p~~~~ 124 (464)
T PRK06938 54 GIYVEDVEG---RQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPL-HTL-----DLTTPVKDQFVQDLFASLPEAFA 124 (464)
T ss_pred ccEEEeCCC---CEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcc-ccc-----ccCCHHHHHHHHHHHHhCccccc
Confidence 344555544 35888633 3566889999999888431111 000 0112334445566666654221
Q ss_pred -CCcEEEe-CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------Ce
Q 043646 139 -ADAIIFC-GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AE 204 (625)
Q Consensus 139 -~~~vift-~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~ 204 (625)
.+.+.|+ .+|+.+.-.++-.++. -+|.+.+|.+...+|.....++...| ..
T Consensus 125 ~~~~v~f~~~SGSEAve~AlklAr~---------------~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~ 189 (464)
T PRK06938 125 REAKIQFCGPTGTDAVEAALKLVKT---------------ATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPG 189 (464)
T ss_pred ccceEEEeCCCcHHHHHHHHHHHHH---------------hhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCC
Confidence 1256665 4788874433332321 12333234444455555443333222 12
Q ss_pred EEEEecCCCCC------------CCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEE
Q 043646 205 VVEIGLDDNGL------------LDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (625)
Q Consensus 205 vv~v~~~~~~~------------ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vi 267 (625)
+..+|...... .+++.+++.+.+... .+++.+|++..+....|.+.| +++|.++|++||+++|
T Consensus 190 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI 269 (464)
T PRK06938 190 VQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLI 269 (464)
T ss_pred cEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 34444332111 135677877763211 125789999988887788765 7899999999999999
Q ss_pred EeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 268 FDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 268 vD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
+|+++. +|-.. .....++. .+|+++++ |.+++...+|++++++++ ....+.. .++|
T Consensus 270 ~DEV~tGfGRtG~~~a~e~~gv-~PDiv~~g--KglggG~PlsAv~~~~~~---~~~~~~~-~~~T-------------- 328 (464)
T PRK06938 270 VDEIQSGFGRTGKMFAFEHAGI-IPDVVVLS--KAIGGSLPLAVVVYREWL---DTWQPGA-HAGT-------------- 328 (464)
T ss_pred EeccccCCCcCcHHHHHHhcCC-CCCEEEee--ccccCCCceEEEeehhHh---hccCCCC-CCCC--------------
Confidence 999965 32111 11111111 57999997 998765557888887764 1221111 1111
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCC
Q 043646 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 345 ~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
..|.|-.+++..+.++.+. .+.+.++.+.+.+++.+.|.++. ...+++.. ...+..+.+.+..+.
T Consensus 329 --------~~gnpla~Aaa~a~L~~l~-----~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~V-rG~Glm~gie~~~~~ 394 (464)
T PRK06938 329 --------FRGNQMAMAAGSATLRYIK-----EHRLAEHAAAMGERLREHLRQLQRDYPQLGDV-RGRGLMLGVEIVDPQ 394 (464)
T ss_pred --------CCcCHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHhCCCeeee-eccceEEEEEeccCc
Confidence 1233433444445555542 23556677777777777765431 11111111 113344444443221
Q ss_pred CCCCccccccC-CCCCC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 424 NSSPENMKIER-NKPLH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 424 ~~~~~~~~~~~-~~~l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
.. .... ....+ ...+...+.+ +||.+.++.. ..+.+|+.
T Consensus 395 ~~-----~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~g~-------------------------------~~~~l~~~ 437 (464)
T PRK06938 395 GE-----PDALGHPPANGELASLIQRECLR-RGLILELGGR-------------------------------HGSVVRFL 437 (464)
T ss_pred cc-----ccccccCCccHHHHHHHHHHHHH-CCeEEeecCC-------------------------------CCCEEEEE
Confidence 00 0000 00001 2345666654 7998864210 12679999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.+|++|++++++++++++.+
T Consensus 438 Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 438 PPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred CCCccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-10 Score=122.80 Aligned_cols=358 Identities=13% Similarity=0.054 Sum_probs=178.3
Q ss_pred CccccCC-CCCCceEeccCCCC------CcchHHHH--HHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhC
Q 043646 66 DVEFDYS-FGKRRLTYADHTAS------GRSLRYIE--DYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135 (625)
Q Consensus 66 ~~~~~~p-~g~~~~~Yld~~~~------~~~p~~v~--ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g 135 (625)
+..+.+. .|+ -|+|..+. |...+.|. +++.+++.... ..+..... ......++.++++++.+
T Consensus 28 G~~l~D~~dG~---~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~ 99 (431)
T TIGR03251 28 GSVLVDARDGR---RYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDV-----YTVAMARFVDTFARVLG 99 (431)
T ss_pred CCEEEECCCCC---ChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCC-----CCHHHHHHHHHHHHhcC
Confidence 3445553 453 38886433 55678888 88888775321 11111000 12333445566666653
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCC--CCceEEEEcCCCCchhHHHHHHcCCe-EE------
Q 043646 136 GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRD--EERWVVFLGPYEHHSNLLSWRQSLAE-VV------ 206 (625)
Q Consensus 136 ~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~--gd~~~Vlv~~~~h~s~~~~~~~~G~~-vv------ 206 (625)
.+.-+.+.|+.||+.+.-.++-.++.... |..-.++ ++ +.+.+|-....+|.....++...|.. ..
T Consensus 100 ~~~~~~v~f~~sGsEAve~AlklAr~~t~----~~~~~~g-~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~ 174 (431)
T TIGR03251 100 DPALPHLFFIEGGALAVENALKTAFDWKS----RHNQARG-IPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPK 174 (431)
T ss_pred CCCcCEEEEeCCcHHHHHHHHHHHHHHhh----cchhhcC-CCCCCCceEEEECCccCCcchhhhhccCCccccccCCCC
Confidence 22223789998899874333322221000 0000000 11 11224444455565554444333311 00
Q ss_pred ----EEec-------CCCC--------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcC
Q 043646 207 ----EIGL-------DDNG--------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYG 263 (625)
Q Consensus 207 ----~v~~-------~~~~--------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g 263 (625)
.++. +... .-+++++++.+.. ..+++.+|+++.+....|.+.+ +++|.++|++||
T Consensus 175 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g 252 (431)
T TIGR03251 175 FDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE--RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHD 252 (431)
T ss_pred CCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh--CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcC
Confidence 0110 0000 0123445555542 2357899999999988898753 889999999999
Q ss_pred CEEEEeccCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccc
Q 043646 264 GFACFDFAAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 264 ~~vivD~A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
+++|+|++++ +|.... .....+. .+|+++++ |.+ |. .|++ +.+++... .... +.+...
T Consensus 253 ~llI~DEV~tG~GrtG~~~a~~~~gv-~PDi~~~g--K~~--~~-~g~~-~~~~i~~~--~~~~-~~~~~~--------- 313 (431)
T TIGR03251 253 ALLIFDEVQTGVGLTGTAWAYQQLGV-QPDIVAFG--KKT--QV-CGIM-AGRRVDEV--ADNV-FAVPSR--------- 313 (431)
T ss_pred CEEEEecchhccCccchHHHHHhcCC-CCCEEEec--ccC--cc-ceEE-ecchHHHh--hhhc-ccCccc---------
Confidence 9999999977 443311 1111111 67999876 665 43 2444 44432110 0000 000000
Q ss_pred ccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEe
Q 043646 341 DTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLV 419 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~ 419 (625)
...-..|+|..+.+..++++.+ +..+ .+++.+....+.+.+.+...+.+++ .... ..++.++.+.+
T Consensus 314 --------~~~T~~gnpl~~aaa~a~L~~l--~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~--i~~v-rg~G~~~~i~~ 380 (431)
T TIGR03251 314 --------LNSTWGGNLVDMVRATRILEII--EEERLVDNARVQGAHLLARLHELAAEFPHL--VSNP-RGRGLMCAFDL 380 (431)
T ss_pred --------cCCCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhCccc--eecc-cccceeEEEEe
Confidence 0000124444444445566655 2223 2334444444444443322333322 2221 12344445444
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
.... ....+.+.|.+ +||.+.+. ....+|++
T Consensus 381 ~~~~---------------~~~~~~~~l~~-~Gvl~~~~---------------------------------g~~~lr~~ 411 (431)
T TIGR03251 381 PSTA---------------DRDEVIRQLYR-EGVLLLGC---------------------------------GERSIRFR 411 (431)
T ss_pred CCHH---------------HHHHHHHHHHh-CCeEEecC---------------------------------CCCeEEEE
Confidence 2210 12357777764 79998632 12569999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 043646 500 FPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~ 519 (625)
+++.+|++|+++++++|.++
T Consensus 412 P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 412 PPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred CCccCCHHHHHHHHHHHHhC
Confidence 99999999999999999753
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-10 Score=112.90 Aligned_cols=353 Identities=17% Similarity=0.222 Sum_probs=205.4
Q ss_pred chHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHH-HHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHhcc
Q 043646 89 SLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTK-MVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVMGI 162 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~-~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l~~ 162 (625)
....|+|++-..+.+.| +.|+.- |.-|..+.+ +..-++++..+.|+.+++. +|--- ||+.|++..-...
T Consensus 52 ts~aVmeAlGS~ltNKYSEGyPG~R-YYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~-SGSPANfavYtal--- 126 (477)
T KOG2467|consen 52 TSRAVMEALGSCLTNKYSEGYPGAR-YYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPY-SGSPANFAVYTAL--- 126 (477)
T ss_pred hHHHHHHHHhHHhhcccccCCCccc-ccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccC-CCCchhhHHHhhh---
Confidence 45688999888886654 445543 334444444 3345667778899998774 23333 7888877665443
Q ss_pred cccchhhhhhhhccCCCCceEEEEcCCCCchhH-HHH----HHcCC-----eEEEEecCC-CCCCCHHHHHHHHHHhhhC
Q 043646 163 TVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LSW----RQSLA-----EVVEIGLDD-NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~----~~~G~-----~vv~v~~~~-~~~ld~~~L~~~l~~~~~~ 231 (625)
++|+++ |.-.+.-|...+ ... +..-+ +-..+.+++ +|.+|.+.|++....
T Consensus 127 -------------l~Ph~R--iMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~---- 187 (477)
T KOG2467|consen 127 -------------LKPHER--IMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL---- 187 (477)
T ss_pred -------------cCCCCe--eeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh----
Confidence 478886 655433222221 111 11111 112234564 789999999987764
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
=||++++.-. +..-...|..++.++|.+.|+++++|-||-.|.+.-.+-+-..+.+|+|+.+.||.+.||.| |+++.
T Consensus 188 frPk~iiaG~--SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg-~mIFy 264 (477)
T KOG2467|consen 188 FRPKLIIAGT--SAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRG-AMIFY 264 (477)
T ss_pred cCCcEEEecc--ccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcc-eeEEE
Confidence 3788765432 23344578999999999999999999998655544333322235789999999999999997 88888
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYI--GYEVIKKQEDVYIE 389 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~--g~~~i~~~~~~l~~ 389 (625)
++..- ...|.. |-. +.|. .++.....-++ .. .|.|--..+.+.| ..+++.. ......+++..+++
T Consensus 265 RkGvk---~~~~k~-g~~-i~yd----lE~kINfaVFP-~l-QGGPHNhtIaalA--vALkQa~tpefk~Yq~qV~~Nak 331 (477)
T KOG2467|consen 265 RKGVK---SIKPKQ-GKE-ILYD----LEDKINFAVFP-GL-QGGPHNHTIAALA--VALKQAMTPEFKEYQKQVLKNAK 331 (477)
T ss_pred eccCC---cCCCCC-CCc-ceec----hhhhhhhhccc-cc-cCCCCcchHHHHH--HHHHhhCCHHHHHHHHHHHHHHH
Confidence 88762 222221 111 1110 00000000000 01 2333222332222 2223333 34466677777788
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
.+.+.|.+. |.+++..-.. ...+.+.+ +..++++..+-+.| +..+|.+.-...++..
T Consensus 332 ala~~l~~~-Gy~lvtgGTD--nHlvLvDL--------------r~~G~dGarvE~vl-e~~~I~~NKNtvpGD~----- 388 (477)
T KOG2467|consen 332 ALASALISR-GYKLVTGGTD--NHLVLVDL--------------RPKGVDGARVEKVL-ELCHIALNKNTVPGDK----- 388 (477)
T ss_pred HHHHHHHHc-CceEecCCcc--ceEEEEec--------------cccCCchHHHHHHH-HHhhhhhcCCcCCCCc-----
Confidence 888888776 8887754211 12222222 33567776665555 6667766433322210
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS----NEEFEFILAALEFIAAYG 523 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t----~edid~ll~aL~~~~~~~ 523 (625)
.-+.|+.|||..+.++| ++|++++.+.|.+.+.-.
T Consensus 389 -------------------Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~i~ 427 (477)
T KOG2467|consen 389 -------------------SALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVKIA 427 (477)
T ss_pred -------------------cccCCCceeccchhhcccCccHHHHHHHHHHHHHHHHHH
Confidence 11247899999876665 789999998888766443
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=116.62 Aligned_cols=316 Identities=17% Similarity=0.135 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH-HHh--cccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ-EVM--GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~-~~l--~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
.+-+.++|+.+++++|++++ +|+..||++-..++-++ .++ |..... ..|...++..++++.+.|--...
T Consensus 68 l~Gipe~r~l~a~llgv~~~-~viv~gNSSL~lM~d~i~~a~~~G~~~~~-------~PW~~~~~vKfLCPvPGYDRHFa 139 (425)
T PF12897_consen 68 LDGIPEARELFAELLGVPPE-NVIVGGNSSLNLMHDTISRAMLHGVPGSE-------TPWCKEEKVKFLCPVPGYDRHFA 139 (425)
T ss_dssp SS--HHHHHHHHHHHTS-GG-GEEE-SS-HHHHHHHHHHHHHHH--TT-S-------S-GGGSS--EEEEEES--HHHHH
T ss_pred cCChHHHHHHHHHHhCCCHH-HEEEeccchHHHHHHHHHHHHhcCCCCCC-------CCchhccCceEEecCCCchHHHH
Confidence 34567899999999999988 88887665555443332 222 211000 01333455679999888877776
Q ss_pred HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe-EEEEecccCccccccCHHHHHHHHH----HcCCEEEEecc
Q 043646 197 SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM-LGSFSACSNVTGIYSDTRSIARLLH----QYGGFACFDFA 271 (625)
Q Consensus 197 ~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~-lv~~~~~~n~TG~~~~l~~I~~la~----~~g~~vivD~A 271 (625)
..+..|++.+.||.+++| .|++.+++++.++ +..| +-+++--+||||+.+.-+.+.+++. ..+.-+++|.|
T Consensus 140 i~E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D---~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNA 215 (425)
T PF12897_consen 140 ITEHFGIEMIPVPMTEDG-PDMDMVEELVAED---PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNA 215 (425)
T ss_dssp HHHHCT-EEEEEEEETTE-E-HHHHHHHTHTS---TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-T
T ss_pred HHHhhCcEEEecCCCCCC-CCHHHHHHHHhcC---CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecC
Confidence 778899999999998877 6999999998753 4566 6677888999999988777777664 46899999999
Q ss_pred CcCCCccccC--CC---C-----CCCCCc--EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccc
Q 043646 272 ASGPYVKINL--RS---R-----NIDGYD--AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDE 339 (625)
Q Consensus 272 ~~~g~~~id~--~~---~-----~~~~~D--~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~ 339 (625)
+++-+..-+. .. + .....| +++.|.+|.-....|++++..+++-. ..+...
T Consensus 216 Y~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl--~~~~~~--------------- 278 (425)
T PF12897_consen 216 YAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANL--AWIKKH--------------- 278 (425)
T ss_dssp TTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHH--HHHHHH---------------
T ss_pred ceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHH--HHHHHH---------------
Confidence 8875541111 10 0 112334 56779999876445678877776652 111000
Q ss_pred cccccccchhhhhcCCChhHHHHHHHHHHHHHHhhc-CHHHH-HHHHHH-------HHHHHHHhhC-CCCcEEEeCCCCC
Q 043646 340 KDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYI-GYEVI-KKQEDV-------YIESALGRIL-PNQNIQVLGNTSV 409 (625)
Q Consensus 340 ~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~-g~~~i-~~~~~~-------l~~~l~~~L~-~l~gv~v~~~~~~ 409 (625)
......| |+-+.-++. ..|+ ++.. |.+.. ++|..- ..+.+.++|. .....+...|.
T Consensus 279 ---------~~~~tIg-pdKvNQLRH-vrff-~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~-- 344 (425)
T PF12897_consen 279 ---------LSVQTIG-PDKVNQLRH-VRFF-KDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPK-- 344 (425)
T ss_dssp ---------HHHH-S----HHHHHHH-HHHH-HSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---S--
T ss_pred ---------hcCceeC-ccHHHHHHH-HHHh-cChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCC--
Confidence 0001112 221222222 2232 2333 33322 222221 2344555666 44334555553
Q ss_pred CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 410 KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 410 ~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
-+-.++|.+.++. ...++++. ++.||.+.+ |..+ ||++..
T Consensus 345 -GGYFIsld~~~G~----------------AkrvV~la-keAGV~LT~AGAtf--Pyg~DP------------------- 385 (425)
T PF12897_consen 345 -GGYFISLDVLDGT----------------AKRVVELA-KEAGVALTPAGATF--PYGKDP------------------- 385 (425)
T ss_dssp -BSS-EEEEESTT-----------------HHHHHHHH-HHTTEE---TTTTS--GGG--T-------------------
T ss_pred -CceEEEEecCCCh----------------HHHHHHHH-HHhCceeCCCCCCC--CCCCCC-------------------
Confidence 4567888887753 66788877 558999865 4433 676643
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.+..|||++. |-+.+|++..++.+.-++.
T Consensus 386 ---~D~nIRiAPS-~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 386 ---RDSNIRIAPS-YPSLEELETAMDVFATCVK 414 (425)
T ss_dssp ---TS-EEEE--S-SS-HHHHHHHHHHHHHHHH
T ss_pred ---CCCcEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 2478999986 5688999999988877653
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-09 Score=116.84 Aligned_cols=361 Identities=15% Similarity=0.103 Sum_probs=190.8
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC-
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ- 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~- 138 (625)
+..+++..|+ -|+|..+. |...+.|.+++.+++..... .++. ....+...++.+.+.+.+....
T Consensus 49 G~~l~D~dG~---~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~-~~~~-----~~~~~~~~~lAe~L~~~~p~~~~ 119 (459)
T PRK06931 49 GVWVTDVEGN---QYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLP-LHTL-----DLTTPLKDAFSEYLLSLLPGQGK 119 (459)
T ss_pred ccEEEeCCCC---EEEEcccchhhccCCCCCHHHHHHHHHHHhhhcc-cccc-----ccCCHHHHHHHHHHHHhCCCccc
Confidence 3455555553 48886433 56788999999988753110 0110 0123445567777878775322
Q ss_pred CCcE-EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcC------------Ce
Q 043646 139 ADAI-IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSL------------AE 204 (625)
Q Consensus 139 ~~~v-ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G------------~~ 204 (625)
+..+ +|+.+|+.+.-..+-.++. . .|.. .|+. ...+|.....++...| ..
T Consensus 120 ~~~~~f~~~SGsEAve~AlklAr~--------------~-tgr~-~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~ 183 (459)
T PRK06931 120 EYCLQFTGPSGADAVEAAIKLAKT--------------Y-TGRS-NVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPG 183 (459)
T ss_pred cceEEEeCCCcHHHHHHHHHHHHH--------------h-cCCC-eEEEECCCcCCccHHHHhhcCCcccccCCCCCCCC
Confidence 1134 4445788874443332321 1 1222 3554 4445554443332221 12
Q ss_pred EEEEecCCCC--------CCCHHHHHHHHHHhh-----hCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEE
Q 043646 205 VVEIGLDDNG--------LLDIEALRSQLELYK-----AAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (625)
Q Consensus 205 vv~v~~~~~~--------~ld~~~L~~~l~~~~-----~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vi 267 (625)
+..+|..... .-+.+.+++.+.+.. ..+++.+|++..+....|.+.| +++|.++|++||+++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI 263 (459)
T PRK06931 184 VQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLI 263 (459)
T ss_pred cEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 3344432211 012343433222211 1235789999888888888765 7899999999999999
Q ss_pred EeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 268 FDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 268 vD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
+|+++. +|-.. .-....+. .+|+++++ |.+++...+|+++.++.. +.+.+.. .++|
T Consensus 264 ~DEV~tGfGRtG~~~a~~~~gv-~PDivt~g--K~l~gG~Pi~av~~~~~~---~~~~~~~-~~~T-------------- 322 (459)
T PRK06931 264 VDEVQAGFARTGKMFAFEHAGI-EPDIIVMS--KAVGGGLPLAVLGIKKEF---DAWQPGG-HTGT-------------- 322 (459)
T ss_pred EecchhcCCcCchHHHhhhcCC-CCCEEEec--ccccCCcceeeeeeHHHH---hhccCCC-CCCC--------------
Confidence 999965 32111 11111111 57999887 998765557777776553 2222211 1111
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEec
Q 043646 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 345 ~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~ 420 (625)
..|.|-.+++..+.++.+ +. +.+.++.+.+.+++.+.|++ .|.+.-+ ...+..+.+.+.
T Consensus 323 --------~~gnpla~aaala~L~~l--~~---~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~v----rG~Glm~giel~ 385 (459)
T PRK06931 323 --------FRGNQLAMATGLTTLKIL--KE---ENLAQNAAERGEWLKAQLAELQKRYPCIGNV----RGRGLMIGIEIV 385 (459)
T ss_pred --------CCCCHHHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEeE----ecCceEEEEEEc
Confidence 123444444444555554 22 23455666666666666654 3322111 123445555443
Q ss_pred cCCCCCCccccccCCCCCC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 421 STTNSSPENMKIERNKPLH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.+.... ........+ ...+...+.+ .||.+.+... .++.+|
T Consensus 386 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~-------------------------------~~~~l~ 429 (459)
T PRK06931 386 DERQPA----DAMGSYPADGELAAAIQKACFE-NGLLLERGGR-------------------------------NGNVVR 429 (459)
T ss_pred cCcccc----cccccCCccHHHHHHHHHHHHH-CCcEEeecCC-------------------------------CCCEEE
Confidence 221000 000000001 2345555544 7998864210 136799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 498 ITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+.+++.+|++|+|++++++++++....+
T Consensus 430 ~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 430 LLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred EECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=118.53 Aligned_cols=214 Identities=11% Similarity=0.025 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCCCCC-CC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRSRNI-DG 288 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~~~~-~~ 288 (625)
+++.|++++.+ ..+++.+|++..+....|.+.| +++|.++|++||+++|+|+++. +|-..- -....+. ..
T Consensus 237 ~l~~l~~~l~~--~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~ 314 (464)
T TIGR00699 237 CLEEVEDLIKK--WHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDP 314 (464)
T ss_pred HHHHHHHHHHh--cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCC
Confidence 35667777763 2246889999999999999988 9999999999999999999975 222110 1111111 14
Q ss_pred CcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 289 YDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
+|+++++ |.+|+ .|+++.+ +. +....+.. .++| ..|.|..++...+.++
T Consensus 315 PDi~t~g--K~lg~---gG~~~~~-~~--~~~~~~~~-~~~T----------------------~~gnp~~~aaa~a~L~ 363 (464)
T TIGR00699 315 PDMVTFS--KKFQT---AGYFFHD-PA--FRPNKPYR-QFNT----------------------WMGDPSRALILREIIQ 363 (464)
T ss_pred CCEEEeh--hhhcc---CCccccc-hh--ccCCCCcc-cccC----------------------CCCCHHHHHHHHHHHH
Confidence 8998876 98852 1333322 22 11111111 1111 0233333444445565
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHH
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILP----NQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFV 443 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v 443 (625)
.+. . +.+.++...+.+++.+.|.+ .| .+.-+.. ..++.++.+.+.... ....+
T Consensus 364 ~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg--~G~Glm~gie~~~~~---------------~~~~i 421 (464)
T TIGR00699 364 EIK--R---KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRG--KGRGTFIAWDTPDEA---------------KRDKL 421 (464)
T ss_pred HHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecc--cCeEEEEEEecCCHH---------------HHHHH
Confidence 552 2 24455555555566665544 34 2221110 024455555442100 13456
Q ss_pred HHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 444 ATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 444 ~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.+.+.+ .||.++.. ....+||.+++.+|++|++.++++|+++
T Consensus 422 ~~~~~~-~Gvl~~~~---------------------------------g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 422 LKKARN-NGVNIGGC---------------------------------GVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred HHHHHH-CCcEEecC---------------------------------CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 777755 69988631 1267999999999999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-09 Score=118.56 Aligned_cols=356 Identities=13% Similarity=0.049 Sum_probs=185.4
Q ss_pred CccccCC-CCCCceEeccCCC------CCcchHHHHH--HHHHhhCCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHHhC
Q 043646 66 DVEFDYS-FGKRRLTYADHTA------SGRSLRYIED--YIINNVLPFYG-NTHTSDSYVGQRMTKMVHEASNYIKRCLG 135 (625)
Q Consensus 66 ~~~~~~p-~g~~~~~Yld~~~------~~~~p~~v~e--a~~~~l~~~~~-n~~~~~~~~~~~~~~~~~~~~~~ia~~~g 135 (625)
+..+.+. .|+ -|+|..+ .|...+.|.+ ++.+++..... .+... . ...+...++.+.|+++.+
T Consensus 35 G~~l~D~~dG~---~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~-~----~~~~~~~~la~~l~~~~~ 106 (443)
T PRK08297 35 GSYLVDARTGR---RYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNS-D----VYTVEMARFVDTFARVLG 106 (443)
T ss_pred CCEEEECCCCC---EeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccC-C----cCCHHHHHHHHHHHhhcC
Confidence 4555552 553 4888643 3567789999 99888854211 11110 0 112334456667777763
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccC-CCCceEEEEcCCCCchhHHHHHHcCCeE---------
Q 043646 136 GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR-DEERWVVFLGPYEHHSNLLSWRQSLAEV--------- 205 (625)
Q Consensus 136 ~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~~~~~~G~~v--------- 205 (625)
-+.-+.|.|+.||+.+.-.++-.++..... + +...+-. ++...+|.+...+|.....++...|...
T Consensus 107 p~~~~~v~f~~SGsEAve~AlKlAr~~~~~---~-~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~ 182 (443)
T PRK08297 107 DPELPHLFFVDGGALAVENALKVAFDWKSR---K-NEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKF 182 (443)
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHHhhc---c-ccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCC
Confidence 222238999988988744333222210000 0 0000000 1222244445556655544443333110
Q ss_pred --EEEecCC-----CC-C---------CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCC
Q 043646 206 --VEIGLDD-----NG-L---------LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGG 264 (625)
Q Consensus 206 --v~v~~~~-----~~-~---------ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~ 264 (625)
..++... .+ . -+++++++.+.+ ..+++.+|++..+....|.+.| +++|.++|++||+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~ 260 (443)
T PRK08297 183 DWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER--HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDA 260 (443)
T ss_pred CccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh--CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 0011000 00 0 123455666652 2357889999988888888744 7899999999999
Q ss_pred EEEEeccCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccc
Q 043646 265 FACFDFAAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKD 341 (625)
Q Consensus 265 ~vivD~A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (625)
++|+|+++. +|-... .....+. .+|+++++ |.+ | +|.+++.+++... ......+.+.
T Consensus 261 llI~DEV~tGfGRtG~~~a~~~~gv-~PDiv~~g--K~l--~--~~a~l~~~~i~~~--~~~~~~~~~~----------- 320 (443)
T PRK08297 261 LLIFDEVQTGVGLTGTAWAYQQLGV-RPDIVAFG--KKT--Q--VCGIMAGRRVDEV--EDNVFAVSSR----------- 320 (443)
T ss_pred EEEEechhhccCccchHHHHHhcCC-CCCEEEec--ccc--c--ccceecchHHHHh--hhhhccCccc-----------
Confidence 999999975 433211 0011111 57999875 887 3 2344455443111 0000000000
Q ss_pred cccccchhhhhc-CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcE--EEeCCCCCCCcce
Q 043646 342 TLYLEDIEEREN-GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNI--QVLGNTSVKRQAI 414 (625)
Q Consensus 342 ~~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv--~v~~~~~~~~~~i 414 (625)
.... .|.|..+....++++.+ + .+.+.++.+.+.+++.+.|++ .|.+ .+-+ ++.+
T Consensus 321 --------~~~T~~gnpl~~aaa~a~L~~l--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg-----~G~~ 382 (443)
T PRK08297 321 --------INSTWGGNLVDMVRARRILEVI--E---EDGLVENAARQGEYLLARLEELAAEFPAVVSNVRG-----RGLM 382 (443)
T ss_pred --------cCCCCCccHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeec-----cceE
Confidence 0000 12333333334444444 2 224555666666666666654 3322 2222 3344
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
+.+.+.... ....+.+.|.+ +||.+.++. ..
T Consensus 383 ~~i~~~~~~---------------~~~~~~~~l~~-~Gvl~~~~~---------------------------------~~ 413 (443)
T PRK08297 383 CAFDLPTTA---------------DRDEVIRRLWE-EGVLVLPCG---------------------------------ER 413 (443)
T ss_pred EEEEecCHH---------------HHHHHHHHHHH-CCEEEecCC---------------------------------CC
Confidence 444442110 13467777764 799986321 25
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+|+++++.+|++|+|+++++|++++.+
T Consensus 414 ~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 414 SIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred eEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999998764
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-10 Score=116.39 Aligned_cols=196 Identities=17% Similarity=0.129 Sum_probs=130.6
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+...+++++++...+..+ -+-. +. .......++....-..+.+....+.+..+ +++++++..+..++.
T Consensus 37 s~~~~e~iea~~~~~~~~-v~Le---~~--l~~g~~~~R~~~~~~~~~~~~~aea~~iv-nnn~aAVll~~~al~----- 104 (395)
T COG1921 37 SLYSPEAIEAMKEAMRAP-VELE---TD--LKTGKRGARLTELAELLCGLTGAEAAAIV-NNNAAAVLLTLNALA----- 104 (395)
T ss_pred ccCCHHHHHHHHHHhccc-ceee---ee--cccchhhHHHHHHHHHHhcccchhheeeE-CCcHHHHHHHHhhhc-----
Confidence 456678888887766432 1111 11 11112222233333334444323355666 566666766666552
Q ss_pred hhhhhhhhccCCCCceEEEEcC-----CCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEec
Q 043646 167 IMRDKLITSLRDEERWVVFLGP-----YEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSA 241 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~-----~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~ 241 (625)
++.+ |+++. ..|+.+...++..|++++++... +.....+++.+|. ++++++.-.+
T Consensus 105 -----------~~~E--vVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t--n~t~~~d~~~AIn-----e~ta~llkV~ 164 (395)
T COG1921 105 -----------EGKE--VVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT--NRTHLKDYELAIN-----ENTALLLKVH 164 (395)
T ss_pred -----------cCCe--EEEEccccccCCCCChhHHHHHcCCEEEEeccc--CcCCHHHHHHHhc-----cCCeeEEEEe
Confidence 2333 44431 47888888899999999888743 4567899999999 5788777777
Q ss_pred ccCccccc--cCHHHHHHHHHHcCCEEEEeccCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 242 CSNVTGIY--SDTRSIARLLHQYGGFACFDFAASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 242 ~~n~TG~~--~~l~~I~~la~~~g~~vivD~A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
.+|. |.. .+.++++++||++|+++++|.+++.... ..+++.+-..|+|.+++|++|.||||. .|+++.+++++
T Consensus 165 s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKelI 240 (395)
T COG1921 165 SSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKELI 240 (395)
T ss_pred eccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHHHH
Confidence 7765 554 5788899999999999999999765322 234443333489999999999999999 59999999984
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-09 Score=121.90 Aligned_cols=367 Identities=14% Similarity=0.074 Sum_probs=213.6
Q ss_pred CCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHH
Q 043646 44 HPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKM 122 (625)
Q Consensus 44 ~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~ 122 (625)
.+|...+..+.++++++.---.. ....|+..+...-. |..|.+.+.+.- .+|..=..-.-..+++..+.
T Consensus 56 ~lp~~~sE~e~~~~~~~~a~kN~---------~~~~fiG~G~y~~~~P~vi~~~i~~~~-~~yTaYTPYQpEisQG~Lqa 125 (954)
T PRK12566 56 DLPAALDEQAALARLRGYAEQNQ---------VWTSLIGMGYHGTVTPTVILRNVLENP-GWYTAYTPYQPEIAQGRLEA 125 (954)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCC---------CccccccccccCCcCcHHHHHHHHhCc-hhhhcCCCCCchhhhHHHHH
Confidence 45666666777777776542210 01234443333332 333335554311 11111011011245667777
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH--
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-- 200 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-- 200 (625)
.-+....|+++.|.+-.+.-++- ++||+-..+..+.. .....+..|+++..-|+.....++.
T Consensus 126 l~e~Qtmi~~LtGm~vaNASl~D--~atA~aEA~~ma~~--------------~~~~k~~~~~v~~~~hP~~~~v~~t~~ 189 (954)
T PRK12566 126 LLNFQQMTIDLTGLDLANASLLD--EATAAAEAMALAKR--------------VAKSKSNRFFVDEHCHPQTLSVLRTRA 189 (954)
T ss_pred HHHHHHHHHHHhCchhhhhhhcc--chhHHHHHHHHHHH--------------HhhcCCCEEEECCCCCHHHHHHHHHhh
Confidence 88899999999999854333443 44442222222221 1111123599999999998766654
Q ss_pred --cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccC--cCCC
Q 043646 201 --SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA--SGPY 276 (625)
Q Consensus 201 --~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~--~~g~ 276 (625)
.|++++. +++++.+. +.+..|++..| |..|.+.|+++|++++|+.|++++ +++- +.+.
T Consensus 190 ~~~g~~i~~-----------~~~~~~~~-----~~~~~v~vq~P-~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~l 251 (954)
T PRK12566 190 EGFGFELVV-----------DAVDNLAA-----HAVFGALLQYP-DTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLV 251 (954)
T ss_pred hcCCcEEEE-----------cchhhcCC-----CCEEEEEEECC-CCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhC
Confidence 4667664 22334343 35777777776 578999999999999999999855 4442 1221
Q ss_pred ccccCCCCCCCCCcEEEEcCC-----CCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 277 VKINLRSRNIDGYDAIFLATH-----KFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~h-----K~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
... ..++ |+|+++.+.+ =.||||. .|++.+++++ .+.++-...| -+++...........+-+..+-|
T Consensus 252 l~~-Pge~---GADI~vG~~Q~fGvp~~~GGP~-ag~~a~~~~~--~R~~PGRivG-~s~D~~G~~a~~l~LqtREQHIR 323 (954)
T PRK12566 252 LTP-PGEL---GADVVLGSTQRFGVPMGYGGPH-AAYFACRDDY--KRAMPGRIIG-VSRDARGNTALRMALQTREQHIR 323 (954)
T ss_pred CCC-hhhc---CCcEEeeCCCcCCCCCCCCCCC-eeeeeehHHH--HhhCCCCccc-eeecCCCCeeeehhhhHHHHHhh
Confidence 111 1223 8999987554 3446666 6999999987 4455443333 33332211111223334445566
Q ss_pred hcCCChhHHHH--H---HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCC
Q 043646 352 ENGGTPQIVQM--I---RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 352 ~~~gt~~~~~~--~---~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
.+..|.|++.. + .+++-.......|..+|.++++.++.++.+.|.+ .|+++.... -.=.|.+.-+.
T Consensus 324 ReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~-----fF~~~~v~~~~--- 394 (954)
T PRK12566 324 REKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRH-----FFDTLTLEVGG--- 394 (954)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccccCC-----ccceEEEEccC---
Confidence 77788887653 1 2222222335567888999999999999999988 588875431 11122221110
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
...++.+...+ .||.+|-- ..+.+.||+.-.+|.
T Consensus 395 ------------~~~~~~~~a~~-~~~n~r~~---------------------------------~~~~~~~s~de~~~~ 428 (954)
T PRK12566 395 ------------AQAAIIESAEA-ARINLRIL---------------------------------GRGRLGVSLDETCDE 428 (954)
T ss_pred ------------CHHHHHHHHHH-CCCeeEEe---------------------------------CCCeEEEEeCCCCCH
Confidence 14456666644 68888721 136799999999999
Q ss_pred HHHHHHHHHHH
Q 043646 507 EEFEFILAALE 517 (625)
Q Consensus 507 edid~ll~aL~ 517 (625)
+|++.+++++.
T Consensus 429 ~~~~~~~~~f~ 439 (954)
T PRK12566 429 ATVARLFDIFL 439 (954)
T ss_pred HHHHHHHHHhc
Confidence 99999999884
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-10 Score=115.00 Aligned_cols=342 Identities=14% Similarity=0.148 Sum_probs=194.9
Q ss_pred CceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChH
Q 043646 76 RRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGT 149 (625)
Q Consensus 76 ~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGt 149 (625)
...-|||..+ .|-+.+.|.+++.+++...|..... ...+...++.+.+...+-.+-. .+.|+++|+
T Consensus 48 ~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~-------~~~~pi~~~Ae~L~s~~P~~l~-~vfF~nsGs 119 (442)
T KOG1404|consen 48 EGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSG-------YLNPPIHDLAEALVSKLPGDLK-VVFFVNSGS 119 (442)
T ss_pred CCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeecc-------ccCCcHHHHHHHHHHhCCCCce-EEEEecCCc
Confidence 4455888654 3456889999999988665432211 1233455566777777765555 789998899
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-------------CC-CC-
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-------------DD-NG- 214 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-------------~~-~~- 214 (625)
.|+=..+..++. + .+.-| .|-....+|......+-..|.....-+. ++ .+
T Consensus 120 EANelal~mar~--Y-----------t~~~d--iIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~ 184 (442)
T KOG1404|consen 120 EANELALKMARL--Y-----------TGNLD--IIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGI 184 (442)
T ss_pred hHHHHHHHHHHH--h-----------cCCce--EEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCccccc
Confidence 986555544441 0 12223 3444445554444333332222111110 11 11
Q ss_pred ---C---CCH----HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCccc
Q 043646 215 ---L---LDI----EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVKI 279 (625)
Q Consensus 215 ---~---ld~----~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~i 279 (625)
. --- ++|+..+... .......++...+...-|++.+ +++..++|+++|.++|.|++++. |-..
T Consensus 185 ~~~~~~~e~~d~~a~~l~d~i~~~-~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG- 262 (442)
T KOG1404|consen 185 FGGSNEEEASDRYAKELEDLILYD-GPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTG- 262 (442)
T ss_pred CCCCchhhhHHHHHHHHHHHHHhc-CCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccc-
Confidence 0 012 3334444321 1124568888888888899865 79999999999999999999764 2222
Q ss_pred cCCCCCCC--CCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 280 NLRSRNID--GYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 280 d~~~~~~~--~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
.|..++.. -+|+++.+ |.+|....+|++++.+++.. .+..... ..+..|..
T Consensus 263 ~~wgfe~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~EIa~--v~~~~~~-----------------------~fnTyggn 315 (442)
T KOG1404|consen 263 HMWGFESHGVVPDIVTMA--KGIGNGFPLGAVVTTPEIAD--VLNQKSS-----------------------HFNTYGGN 315 (442)
T ss_pred ccccccccCCCccHHHHH--hhccCCCcceeeecCHHHHH--HHHhccc-----------------------cccccCCC
Confidence 33322211 35776665 99987777899999998833 2111000 01122333
Q ss_pred hHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 358 QIVQ-MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 358 ~~~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
++.. +..+.+..+ -.+++.++......|+.+.|.++. ...++++. ..++-++-..+..+.. +.
T Consensus 316 P~a~avg~aVL~Vi-----kee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdV-RG~GLm~GvE~V~dk~---------~~ 380 (442)
T KOG1404|consen 316 PVACAVGLAVLKVI-----KEENLQENAAEVGSYLLEKLAALKDKHPIIGDV-RGRGLMLGVELVSDKS---------EP 380 (442)
T ss_pred chhHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHhhcCCceeec-ccceeEEEEEEecccC---------CC
Confidence 4433 334445544 246888888889999999987752 34455543 1223333333332210 01
Q ss_pred CCC---ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 043646 436 KPL---HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512 (625)
Q Consensus 436 ~~l---~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~l 512 (625)
.+. ....+.+... ++|+.+.-|.. ....+||++++..|++|+|++
T Consensus 381 ~pp~~~~~~~i~~~ck-e~Gvlvg~g~i-------------------------------~G~vfriaPPlciT~edi~f~ 428 (442)
T KOG1404|consen 381 KPPATAEGAVIGEQCK-ELGVLVGKGGI-------------------------------HGNVFRIAPPLCITKEDIDFA 428 (442)
T ss_pred CCcchHHHHHHHHHHH-HhCeeeecccc-------------------------------cceEEEecCCeeccHHHHHHH
Confidence 111 1335566663 47998854432 236899999999999999888
Q ss_pred HHHH
Q 043646 513 LAAL 516 (625)
Q Consensus 513 l~aL 516 (625)
++..
T Consensus 429 ~~~~ 432 (442)
T KOG1404|consen 429 VEYF 432 (442)
T ss_pred HHHH
Confidence 8855
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-09 Score=113.87 Aligned_cols=319 Identities=14% Similarity=0.094 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccC-CCCceEEEEcC-------CCCch-
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR-DEERWVVFLGP-------YEHHS- 193 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~-------~~h~s- 193 (625)
+.++++.+++++|.+ .+++|-+|..+.. .+...+ ++ +|++ +.+.. ..|+-
T Consensus 76 v~~Lee~vael~G~E---~alpthqGRgaE~-Il~~~~---------------~~~~g~e--~g~~~~~~~v~hn~~fet 134 (467)
T TIGR02617 76 YYALAESVKNIFGYQ---YTIPTHQGRGAEQ-IYIPVL---------------IKKREQE--KGLDRSKMVAFSNYFFDT 134 (467)
T ss_pred HHHHHHHHHHHhCCc---eEEECCCCchHHH-HHHHhh---------------ccccccc--ccccccccccceEEEEec
Confidence 456889999999986 4577756654432 333333 23 4554 33222 22222
Q ss_pred hHHHHHHcCCeEEEEecC----------CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc-cccccC---HHHHHHHH
Q 043646 194 NLLSWRQSLAEVVEIGLD----------DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNV-TGIYSD---TRSIARLL 259 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~~----------~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~-TG~~~~---l~~I~~la 259 (625)
........|+.++.++.+ ..|.+|+++|+++|.++. .++...+..+-.+|. -|...| ++++.++|
T Consensus 135 t~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g-~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la 213 (467)
T TIGR02617 135 TQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVG-PNNVPYIVATITCNSAGGQPVSLANLKAVYEIA 213 (467)
T ss_pred chHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcC-CCCceeeeeeEEEecCCCEEeCHHHHHHHHHHH
Confidence 223355678887765322 258999999999998521 122333333333444 466666 57889999
Q ss_pred HHcCCEEEEeccC----cC-------CCccccCCCCC---CCCCcEEEEcCCCCCCCCCCceEEEEecc---c-cc-cCC
Q 043646 260 HQYGGFACFDFAA----SG-------PYVKINLRSRN---IDGYDAIFLATHKFLGGPGTPGILLISKA---L-YQ-LGS 320 (625)
Q Consensus 260 ~~~g~~vivD~A~----~~-------g~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~l~v~~~---~-~~-l~~ 320 (625)
++||+.+|+|+|- +. ++...+++++. ...+|.+++|+.|-+|.|.| |+|+.+++ . +. .+.
T Consensus 214 ~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~~~~ 292 (467)
T TIGR02617 214 KKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTECRT 292 (467)
T ss_pred HHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHHHHh
Confidence 9999999999972 21 34444443321 24789999999999999987 88898877 2 11 111
Q ss_pred CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 321 SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
+...+.|. ...|..+.-.+ .+++.-+.+....+.+..|..+ .+|+.++|.+. |
T Consensus 293 ~~i~~EGf-----------------------~tYGGlagrd~--ea~a~Gl~e~~~~~yl~~ri~q-v~yl~~~L~~~-G 345 (467)
T TIGR02617 293 LCVVQEGF-----------------------PTYGGLEGGAM--ERLAVGLYDGMNLDWLAYRINQ-VQYLVNGLEEI-G 345 (467)
T ss_pred hcccccCC-----------------------cCcCchhHHHH--HHHHhhhhhcccHHHHHHHHHH-HHHHHHHHHhC-C
Confidence 11112111 11232222222 2233223344445556655554 88899998764 5
Q ss_pred EEEeCCCCCCCcceEEEEe----ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee-cCCCCCchhhHhhhcCChh
Q 043646 401 IQVLGNTSVKRQAILSFLV----YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR-GGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~----~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~-~G~~~~~~~~~~~l~~~~~ 475 (625)
+-++. . +++-.|.- +|.. ......+..++..|-.+.||... -|+. .++-+..
T Consensus 346 vpi~~-~----Gghav~iDa~~~lphi----------p~~~fpa~al~~~ly~~~GiR~~e~G~~--------~~~rd~~ 402 (467)
T TIGR02617 346 VVCQQ-A----GGHAAFVDAGKLLPHI----------PADQFPAHALACELYKVAGIRAVEIGSL--------LLGRDPK 402 (467)
T ss_pred CcEEe-c----CccEEEEehhhhCCCC----------ChhhCcHHHHHHHHHHHcCcceEeecce--------ecccCCC
Confidence 54443 2 23334431 1211 11122344566666566777532 1221 1111100
Q ss_pred hHHHHHHHHHhCCCCCC--CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 476 RSLEIRSAIQKGYLGVK--PGWTRITFP-YYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~--~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
.. +-.. -..+|+.++ -.-|.+.+|.++++|..+.++...
T Consensus 403 ~~-----------~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 403 TG-----------KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred CC-----------ccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhh
Confidence 00 0001 267999996 333789999999999999887654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-09 Score=106.71 Aligned_cols=327 Identities=16% Similarity=0.181 Sum_probs=194.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH-HhCCCCC----CcE--EEeCChHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKR-CLGGGQA----DAI--IFCGAGTTA 151 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~-~~g~~~~----~~v--ift~sGtta 151 (625)
+|-|-.+-.|..+.|.++-...+.. +.+..|-.-.+... ..+.+++ +||.+.+ +.+ +=| .|.|.
T Consensus 35 vY~de~Gk~pvl~aV~~Ae~~l~~~----~~~k~Yl~i~G~~~----f~~~~~~llFG~d~~~l~~~Rv~t~Qt-~GGTG 105 (396)
T COG1448 35 VYKDEDGKTPVLRAVKKAEKRLLEQ----EKTKNYLPIEGLPE----FLEAVQKLLFGADSPALAEDRVATVQT-LGGTG 105 (396)
T ss_pred eeeCCCCCcchhHHHHHHHHHhhcc----ccccccCCcCCcHH----HHHHHHHHhcCCCcHHHHhhhHhheec-CCcch
Confidence 7889999899888888876554422 11111111112222 3333334 4564411 122 233 46677
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-C-CCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-D-NGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~-~~~ld~~~L~~~l~~~~ 229 (625)
||...+..+-. ..+.. .|.+++++|+.....+...|.+|..+|.= . +..+|.+.+.+.|+..
T Consensus 106 AL~~~A~fl~~-------------~~~~~--~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a- 169 (396)
T COG1448 106 ALRVAADFLAR-------------FFPDA--TVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTA- 169 (396)
T ss_pred HHHHHHHHHHH-------------hCCCc--eEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhC-
Confidence 78887776631 23333 49999999999988899999999999863 3 4469999998888742
Q ss_pred hCCCCeEEEE-ecccCccccccC---HHHHHHHHHHcCCEEEEeccC-cCCCccccCCCC-----CCCCC-cEEEEcCCC
Q 043646 230 AAKRPMLGSF-SACSNVTGIYSD---TRSIARLLHQYGGFACFDFAA-SGPYVKINLRSR-----NIDGY-DAIFLATHK 298 (625)
Q Consensus 230 ~~~~~~lv~~-~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~-~~g~~~id~~~~-----~~~~~-D~v~~S~hK 298 (625)
+...+|++ .-||||||.-.. .++|+++.++.|.+.++|-|+ +++. .++-+.. -..+. =+++.|++|
T Consensus 170 --~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~-GleeDa~~lR~~a~~~~~~lva~S~SK 246 (396)
T COG1448 170 --PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFAD-GLEEDAYALRLFAEVGPELLVASSFSK 246 (396)
T ss_pred --CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhcc-chHHHHHHHHHHHHhCCcEEEEehhhh
Confidence 23334444 556799998755 467999999999999999993 3322 2322111 01122 467789999
Q ss_pred CCCCCCC--ceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--H------HHH
Q 043646 299 FLGGPGT--PGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--R------AAL 367 (625)
Q Consensus 299 ~lggp~g--~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~------aal 367 (625)
.|| -+| +|++.+ .++....... ..++.. ..|-...+|+-.+.. + .--
T Consensus 247 nfg-LYgERVGa~~vva~~~~~a~~v--------------------~sqlk~-~iR~~ySnPP~~Ga~vva~IL~~p~Lr 304 (396)
T COG1448 247 NFG-LYGERVGALSVVAEDAEEADRV--------------------LSQLKA-IIRTNYSNPPAHGAAVVATILNNPELR 304 (396)
T ss_pred hhh-hhhhccceeEEEeCCHHHHHHH--------------------HHHHHH-HHHhccCCCchhhHHHHHHHhCCHHHH
Confidence 997 443 565543 3222000000 001111 122233444433321 1 112
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC-C--cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPN-Q--NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVA 444 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l-~--gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~ 444 (625)
+.|.++ .+.+++|+..++..+.+.|++. + .+..+.. +.+.|+|. +++..+|.
T Consensus 305 a~W~~E---l~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~----Q~GMFsy~------------------Gls~~QV~ 359 (396)
T COG1448 305 AEWEQE---LEEMRQRILEMRQALVDALKALGAPRNFDFIIS----QRGMFSYT------------------GLSPEQVD 359 (396)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCCcccchHhh----cCceeecC------------------CCCHHHHH
Confidence 333333 4577888999999999999763 1 2444433 44666553 23455555
Q ss_pred HHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 445 TLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 445 ~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+ |.++|||.+.. .| ||++.- .++..|++++++|.++
T Consensus 360 r-Lree~~IY~v~-----------------------------------sG--Ri~vaG-l~~~ni~~va~ai~~v 395 (396)
T COG1448 360 R-LREEFGIYLVA-----------------------------------SG--RINVAG-LNTSNIDYVAKAIAAV 395 (396)
T ss_pred H-HHHhccEEEec-----------------------------------CC--eeeecc-CChhhHHHHHHHHHhh
Confidence 4 55889999862 24 888853 5779999999999875
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-08 Score=108.57 Aligned_cols=210 Identities=14% Similarity=0.067 Sum_probs=117.1
Q ss_pred CccccCCCCCCceEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+++..| .-|+|.. ..|...+.|.+++.+++..... . .+ ......++.+.|++++.. .
T Consensus 39 G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~---~-~~-----~~~~~~~la~~l~~~~p~-~- 104 (431)
T PRK06209 39 GAHVWDVDG---NEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN---F-TR-----PSAIELDAAESFLELIDG-A- 104 (431)
T ss_pred CCEEEeCCC---CEEEEccccccchhcCCCCHHHHHHHHHHHHhCcC---C-CC-----CCHHHHHHHHHHHHhCCc-c-
Confidence 344444444 3488864 3456678999999998864321 1 00 122233566777777642 2
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHH-----HcCCe------EEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWR-----QSLAE------VVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~-----~~G~~------vv~ 207 (625)
+.+.|+.+|+.+.-.++-.++. . .|.+ .|+.. ...|++...... ..|.. +..
T Consensus 105 ~~v~f~~sGseA~e~AlklAr~--------------~-tgr~-~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~ 168 (431)
T PRK06209 105 DMVKFCKNGSDATSAAVRLARA--------------Y-TGRD-LVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVT 168 (431)
T ss_pred ceEEEecCHHHHHHHHHHHHHH--------------H-hCCC-eEEEeccCccccccccccccCCCCCCCChhHhccccc
Confidence 3789998888874444333321 1 1222 34432 112221110000 00110 111
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc--cCCC-C
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI--NLRS-R 284 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i--d~~~-~ 284 (625)
++ .-|+++|++++.+ ..+++.+|++.......+....+++|.++|++||+++|+|+++. |.... .... .
T Consensus 169 ~~-----~~d~~~l~~~l~~--~~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~t-G~~~~~~g~~~~~ 240 (431)
T PRK06209 169 FR-----YNDIASLEALFED--HPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMIT-GFRWHMRGAQKLY 240 (431)
T ss_pred cC-----CCCHHHHHHHHHh--CCCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-cCCcCcchhhHHh
Confidence 11 2378999999874 22356788887665443333448999999999999999999974 32111 0111 1
Q ss_pred CCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
+. .+|+++++ |.+|+...+|++++++++.
T Consensus 241 gv-~PDi~t~g--K~lggG~p~~av~~~~~i~ 269 (431)
T PRK06209 241 GI-VPDLSCFG--KALGNGFAVSALAGKREYM 269 (431)
T ss_pred CC-Ccceeeeh--hhhcCCcccEEEEEHHHHH
Confidence 11 46886665 9997643468888888773
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-08 Score=114.02 Aligned_cols=226 Identities=13% Similarity=0.036 Sum_probs=132.3
Q ss_pred HHHHHHHHHh---hhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCcCC-Ccc--ccCCCCCCC
Q 043646 219 EALRSQLELY---KAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YVK--INLRSRNID 287 (625)
Q Consensus 219 ~~L~~~l~~~---~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g-~~~--id~~~~~~~ 287 (625)
+.+++.|.+. ...+++.+|++..+ ....|.+.+ +++|.++|++||+++|+|+++..- -.. .....++.
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv- 645 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGC- 645 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCC-
Confidence 4566666521 11245778888874 677788865 789999999999999999996632 111 11111111
Q ss_pred CCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCC-C----cccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 288 GYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSP-P----STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 288 ~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~-p----~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
.+|+++++ |.++|. ..+|+++++++++. .+. + .+..+.| ..|.|-.++
T Consensus 646 ~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~--~f~~~~~~~~~~hg~T----------------------y~gnpl~cA 699 (817)
T PLN02974 646 KPDIACYA--KLLTGGLVPLAATLATEEVFE--AFRGPSKLDALLHGHS----------------------YTAHPMGCA 699 (817)
T ss_pred CCCEEeec--ccccCCCCccEEEEEcHHHHH--hhccccccCCcccCCC----------------------CCcCHHHHH
Confidence 57999988 999765 35799999998843 221 0 0001111 123344444
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI----LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
+..+.++++.. ..-.+.+.++...+.+++.+.| .+.|.+.=+. ..+.++.+.+..+. ...+
T Consensus 700 aala~L~~~~~-~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VR----g~Gl~~~iel~~~~----------~~~~ 764 (817)
T PLN02974 700 AAAKALQWYKD-PSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVV----SLGTVLALELDAEG----------SGSG 764 (817)
T ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEE----eeeeEEEEEEecCC----------cccc
Confidence 44566666521 1123355555555555555444 4445432111 13344555443321 0011
Q ss_pred CC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 438 LH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 438 l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
.. ...+.+.+..++||.+++. .+.+|+.+++.+++++++++++
T Consensus 765 ~~~~~a~~v~~~~~~~~Gl~~r~~----------------------------------Gnvi~l~pP~~i~~e~l~~~~~ 810 (817)
T PLN02974 765 YSSLYARSVVRRLRREDGIYARPL----------------------------------GNVVYLMCGPTTSPETCTRLLR 810 (817)
T ss_pred cchHHHHHHHHHHHHhCCEEEEec----------------------------------CCEEEEeCCCCCCHHHHHHHHH
Confidence 11 2456677752479999831 2679999999999999999999
Q ss_pred HHHHHH
Q 043646 515 ALEFIA 520 (625)
Q Consensus 515 aL~~~~ 520 (625)
+|.+.+
T Consensus 811 ~l~~~~ 816 (817)
T PLN02974 811 KVYRRL 816 (817)
T ss_pred HHHHHh
Confidence 998754
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-09 Score=102.41 Aligned_cols=339 Identities=15% Similarity=0.164 Sum_probs=215.4
Q ss_pred CcchHHHHHHHHHhhCCCCCCCC--CCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTH--TSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~--~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
...|.+|+..+.+.+..+.+-.- .+.++.+.....+++..+..+.++++.+...+|+|..+|.|.-+..+..-+-
T Consensus 16 Aklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~--- 92 (370)
T KOG2790|consen 16 AKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLI--- 92 (370)
T ss_pred ccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhh---
Confidence 45688888888888876533211 1224566778889999999999999999887888776665553443332221
Q ss_pred cchhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHHHcCC-eEEEEecCC-C-C-CCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 165 PSIMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWRQSLA-EVVEIGLDD-N-G-LLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~~~G~-~vv~v~~~~-~-~-~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
+++.|+ -.-|++...+--+...+ ...|. ..+..+... . | ..|.+.++. + ++-+.|.+
T Consensus 93 ----------glK~g~~AdYiVTGsWS~KA~~EA-kk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~-----~da~yvyy 154 (370)
T KOG2790|consen 93 ----------GLKHGRCADYVVTGSWSAKAAEEA-KKYGTPNIVIPKLKSYTYGKVPDPSTWEL--N-----PDASYVYY 154 (370)
T ss_pred ----------ccccCCccceEEeccccHHHHHHH-HhhCCceEEeccccccccCcCCChhhccc--C-----CCccEEEE
Confidence 123331 12466655444443322 23343 233344333 1 2 345544432 1 45679999
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG 319 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~ 319 (625)
|...+..|+-.+.-. +-.-+|+.++.|-.+-+-..++|+..+ ++++...+|..| |.|+-++++++++ +.
T Consensus 155 CaNETVHGVEf~~~P---~~~~~~~vlVaDmSSnflSrpvDvsk~-----gvi~aGAQKN~G-~aG~Tvvivr~dl--lg 223 (370)
T KOG2790|consen 155 CANETVHGVEFDFIP---VNDPKGAVLVADMSSNFLSRPVDVSKF-----GVIFAGAQKNVG-PAGVTVVIVRKDL--LG 223 (370)
T ss_pred ecCceeeceecCCCC---CCCCCCceEEEecccchhcCCccchhc-----ceEEeccccccC-ccccEEEEEehhh--hc
Confidence 999889998643222 223468999999987777889999854 889999999987 8888899999998 33
Q ss_pred CC---CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 320 SS---PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 320 ~~---~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
.. .|.... |........-..||+..++. ...+++++ +..|.+.+.+...+.++.+++.
T Consensus 224 ~~~~~tP~v~d----------------yk~~~~NnSlyNTpP~f~iy~~~Lv~~~il-~~GGl~a~e~~n~~KskllYd~ 286 (370)
T KOG2790|consen 224 NALDITPSVLD----------------YKIMDKNNSLYNTPPCFGIYVMGLVFEWIL-EKGGLAAMEKLNQEKSKLLYDA 286 (370)
T ss_pred ccccCCccccc----------------eeeeccccccccCCCeeeeeehhhHHHHHH-hcccHHHHHHHHHHHHHHHHHH
Confidence 32 222211 11111222334677777664 45566654 6688999999988899999999
Q ss_pred hCCCCcEEEeCCCC--CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 395 ILPNQNIQVLGNTS--VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 395 L~~l~gv~v~~~~~--~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
|.+..|+-.- |.+ .+..-++.|.+-++ .+..+++.+.. +++=|++.
T Consensus 287 iD~s~gfy~c-pVe~~~RS~MNV~Fri~~d--------------~Le~eFLkeA~-~~~mv~LK---------------- 334 (370)
T KOG2790|consen 287 IDNSNGFYRC-PVEPSVRSRMNVPFRIEKD--------------ELEAEFLKEAA-KEHMVQLK---------------- 334 (370)
T ss_pred HHhcCCeEEc-ccchhhhhhcccceeecch--------------HHHHHHHHHHH-Hhhhhccc----------------
Confidence 9887666432 222 23345677877543 23444555544 44445543
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
||.. -|.+|.|+--..+-++++.|++.++++.+.
T Consensus 335 --------------GhRS--VGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 335 --------------GHRS--VGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred --------------cccc--cccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 2222 377999998888999999999999987653
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-11 Score=121.20 Aligned_cols=196 Identities=19% Similarity=0.180 Sum_probs=41.4
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
++.++.+.+++.+.... |.|-.. +-..|..- .-+..+.+.+++++|+... +++ ++..+++.+++..+.
T Consensus 16 s~l~~~a~~a~~~~a~~-Y~nLE~-dl~~G~Rg-~R~~~v~~ll~~ltgAeaA---~Vv-NnnaAAv~L~l~~la----- 83 (367)
T PF03841_consen 16 SPLSEEAIEAVAEVASG-YSNLEY-DLETGKRG-SRYAHVEELLCELTGAEAA---LVV-NNNAAAVLLALNTLA----- 83 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc-cccccc-cccccccc-ccccccccccccccccccc---ccc-ccccccccccccccc-----
Confidence 45567777777654432 222211 01111111 1245577888999998744 454 455566666655552
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhH------HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNL------LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~------~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
+|.+ |+++..+-.-+- ..++..|+++++|... ....+++++++|+ ++|.++...
T Consensus 84 -----------~~~E--vIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt--N~t~~~Dye~AI~-----e~Ta~ll~V 143 (367)
T PF03841_consen 84 -----------KGKE--VIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT--NRTHLSDYEKAIT-----ENTAALLKV 143 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cccc--cccccccccccccccccccccccccccccccccc--ccccccccccccc-----ccccccccc
Confidence 3433 777654443222 3456689999988764 3456788999998 689999999
Q ss_pred cccCcc--ccc--cCHHHHHHHHHHcCCEEEEeccCc---------CCCccccCCCCCCCCCcEEEEcCCCCCCCCCCce
Q 043646 241 ACSNVT--GIY--SDTRSIARLLHQYGGFACFDFAAS---------GPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPG 307 (625)
Q Consensus 241 ~~~n~T--G~~--~~l~~I~~la~~~g~~vivD~A~~---------~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G 307 (625)
|.+|.. |.. .+++++++++|+||+++++|.+++ .+. ..++.+.-..|+|.++||+.|.+|||. .|
T Consensus 144 h~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aG 221 (367)
T PF03841_consen 144 HTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-EPTVQEYLAAGADLVTFSGDKLLGGPQ-AG 221 (367)
T ss_dssp -----------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEETTSSSSS-S--E
T ss_pred cccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-ccHHHHHhhcCCCEEEEECCCcCCCCC-eE
Confidence 988873 433 579999999999999999999863 222 233444434599999999999999999 59
Q ss_pred EEEEecccc
Q 043646 308 ILLISKALY 316 (625)
Q Consensus 308 ~l~v~~~~~ 316 (625)
+++.++++.
T Consensus 222 iI~Gkk~lI 230 (367)
T PF03841_consen 222 IIVGKKELI 230 (367)
T ss_dssp EEEEEHHHH
T ss_pred EEEeCHHHH
Confidence 999999984
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-08 Score=103.11 Aligned_cols=339 Identities=14% Similarity=0.087 Sum_probs=199.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhh
Q 043646 91 RYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRD 170 (625)
Q Consensus 91 ~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (625)
+.+.+.....+.++. -+++.-.--+++.+..-.+++.|++++|+.. .|++. .|-+ ++.....++
T Consensus 111 ~~ike~a~~~lrkyG--vGsCGPrGFYGt~DvHldlE~~iakF~G~E~--aivYs-~gF~-ti~S~ipaf---------- 174 (467)
T KOG1358|consen 111 EEIKEEASFTLRKYG--VGSCGPRGFYGTIDVHLDLEKRIAKFMGTED--AIVYS-YGFS-TIESAIPAF---------- 174 (467)
T ss_pred HHHHHHHHHHHHHhC--CCCcCCCcccccceeecccHHHHHHhhCCcc--eeeec-cccc-hhhhcchhh----------
Confidence 455555555555441 1111111113355666678999999999974 47774 4444 355555555
Q ss_pred hhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh----hCCC----CeEEEEecc
Q 043646 171 KLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK----AAKR----PMLGSFSAC 242 (625)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~----~~~~----~~lv~~~~~ 242 (625)
...|| +|++....+..+..+++...-.+++...+ |+++|+..+.+.. ..++ -+.+++...
T Consensus 175 -----sKrGD--Ii~~de~~nfaIq~GlqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl 242 (467)
T KOG1358|consen 175 -----SKRGD--IIFVDEAVNFAIQKGLQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGL 242 (467)
T ss_pred -----hccCc--EEEEehhhhHHHHHHHhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEee
Confidence 25677 68888888888888888777777777754 7888877664311 1112 357888899
Q ss_pred cCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc---CCC---CCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN---LRS---RNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 243 ~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id---~~~---~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
.-+||.+.|+.+|.++..+|...+++|+..++|...-. +.+ .....+|++++|..-.++.-+ |+...+.-..
T Consensus 243 ~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G--gFc~G~~~i~ 320 (467)
T KOG1358|consen 243 YANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG--GFCAGKSFIA 320 (467)
T ss_pred ccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC--ceeecceeeE
Confidence 99999999999999999999999999999887654321 111 012367999999877765332 5555533332
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
..+++ .|.+ .-|.+..|+.+... ..++... + ... .+.+..+.....+.+.|
T Consensus 321 ~hQrL----Sg~~--------------------Y~fSAslPp~la~aa~~ai~i~--~-~~p-~~~~~L~~k~~~~H~~l 372 (467)
T KOG1358|consen 321 DHQRL----SGSG--------------------YCFSASLPPYLAGAAIKAILIE--E-WNP-EIVQPLRAKVAKFHAAL 372 (467)
T ss_pred eeeec----cccc--------------------eeeeccCchhhhhhHHHHHHHH--h-hCc-chhhhhhccccccchhh
Confidence 11111 1112 12344566655432 1222222 1 111 24444555556677778
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
+...++.+.+.. -+|++-........+. ..+.. + -.++++....+ ++.+...
T Consensus 373 ~~~s~~~v~~~~---~SPi~hl~l~~~~~s~-----e~e~~-l-L~eivd~~i~~-~~ll~~a----------------- 424 (467)
T KOG1358|consen 373 SSNSGFIVSGSP---ESPIIHLQLERSYGSR-----EKEEK-L-LEEIVDKCIAE-GVLLTRA----------------- 424 (467)
T ss_pred hcCCceEEecCc---CCceeeeeecccccch-----HHHHH-H-HHHHHHHHHhh-cceehhh-----------------
Confidence 777788887764 4566666554422100 00000 0 12334443333 4544311
Q ss_pred hHHHHHHHHHhCCCCCC-CcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVK-PGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~-~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+..+.+-.+ +-.+||++...++++|++++.+.|++++..
T Consensus 425 -------~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 425 -------KYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred -------hhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 1111111112 457999999999999999999999988654
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-07 Score=95.32 Aligned_cols=285 Identities=18% Similarity=0.122 Sum_probs=164.6
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+|.|.+ |+|..+ .+...+++.+++.+.+..+. |+ .+..++...-++.+.+.+..+-...+
T Consensus 48 ~kl~D~~g~E---yiD~~ssw~~~~~Ghanpev~ral~~q~~k~~---hs----~~~~~t~eav~l~~~l~~~~~~~~~~ 117 (433)
T KOG1401|consen 48 SKLFDPDGKE---YIDFTSSWAVTILGHANPEVARALAEQAKKLG---HS----SNGYFTLEAVELEEVLSAVLGKGSAE 117 (433)
T ss_pred eeeecCCcce---eeeeccceeccccCCCCHHHHHHHHHHHhhhe---ec----cCccccHHHHHHHHHHHhcccCCCcc
Confidence 3444466643 676544 34557899999988876531 11 11112222445667777777665555
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCce-EEEEcCCCCchhHHHHHHcCCeEEEEecC---CC---
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERW-VVFLGPYEHHSNLLSWRQSLAEVVEIGLD---DN--- 213 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~---~~--- 213 (625)
.|.|+.|||+|+..+|-.++-.... -.+.++. .|-+...+|.-...++...+..-...|.+ ++
T Consensus 118 rvff~nsGTeAne~ALK~Ark~~~~----------~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~ 187 (433)
T KOG1401|consen 118 RVFFCNSGTEANETALKFARKFTGK----------KHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVT 187 (433)
T ss_pred EEEEecCCcHHHHHHHHHHHHhhcc----------cCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceee
Confidence 8999999999966666555421110 0122222 44455555655544444222211111111 10
Q ss_pred -CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCcccc-CCCCCC
Q 043646 214 -GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVKIN-LRSRNI 286 (625)
Q Consensus 214 -~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~id-~~~~~~ 286 (625)
..-|+.+|++.++.+ .+...+|++....-..|.+.. +..|..+|+++|+++|.|+++.. +-.... ..+.-.
T Consensus 188 ~~ynd~t~l~k~~~~h--~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~ 265 (433)
T KOG1401|consen 188 AEYNDSTALEKLFESH--KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFG 265 (433)
T ss_pred cccCCHHHHHHHHHhC--CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhC
Confidence 123789999999853 235789999998877787733 67899999999999999999763 211110 000000
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcc--cCCceEEeeccccccccccccchhhhhcCCChhHHHHHH
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPST--CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR 364 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~--~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~ 364 (625)
-.+|+.++. |.+++...+|+.++++++. +.+.|-- +.|++ -.|.|-.+....
T Consensus 266 ~~PDI~t~a--K~L~gGlPigA~~v~~kV~--~~i~~~~~l~hg~T----------------------f~gnpLacsa~~ 319 (433)
T KOG1401|consen 266 VTPDITTVA--KPLGGGLPIGATGVRDKVA--EMISPGDHLYHGGT----------------------FSGNPLACSAGI 319 (433)
T ss_pred cCCcceeeh--hhccCCceeEEEeehHHHH--hhcCCCCccccCcc----------------------cCCChhhhhHHH
Confidence 156888776 9997766689999999983 3332211 11122 123344444434
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
.+++.+. +....+++.+....+++.+.+.+.+-+.
T Consensus 320 ~~l~~l~-~~e~~k~vs~~~k~L~~~l~e~~~~~~~ 354 (433)
T KOG1401|consen 320 KVLDELK-DPETLKNVSKIGKELRKLLDEYLKKTPN 354 (433)
T ss_pred HHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4455542 3344567777777788888888876543
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=112.76 Aligned_cols=169 Identities=17% Similarity=0.113 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHH-HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTA-AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGtta-al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
.+...+..-+-+..|.......+.+ ..+|. .|.+.+.++. .+|..+ .|+.+...|.|-.+++.
T Consensus 56 ~ltn~l~~d~~~~~G~~~~~~~~~v-P~atgm~l~l~l~~l~--------------~r~~a~-~Viw~ridqkSc~kai~ 119 (389)
T PF05889_consen 56 KLTNSLVLDALRLAGLRSVKSCFVV-PMATGMSLTLCLLALR--------------MRPKAK-YVIWPRIDQKSCFKAIE 119 (389)
T ss_dssp HHHHHHHHHHHHHTTHTTHCEEEEE-SS-HHHHHHHHHHHHH--------------HHCT---EEEEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccceEEE-ecccccHHHHHHHHHh--------------cccCCc-eEEEeeccccchHHHHH
Confidence 3444455555667888754344555 34444 4544444442 023333 58999999999999999
Q ss_pred HcCCeEEEEecCC--C-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC-HHHHHHHHHHcCCEEEEeccCcCC
Q 043646 200 QSLAEVVEIGLDD--N-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD-TRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 200 ~~G~~vv~v~~~~--~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~-l~~I~~la~~~g~~vivD~A~~~g 275 (625)
..|.+++.|+... + -..|++.+++++++ .+..+.+.++++.+-.-|...| +++|+++|++||+..++-.|+++-
T Consensus 120 ~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~--~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ 197 (389)
T PF05889_consen 120 RAGLEPVVVENVLEGDELITDLEAIEAKIEE--LGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQ 197 (389)
T ss_dssp HTT-EEEEE-EEEETTEEEEHHHHHHHHHHH--HCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT
T ss_pred hcCCeEEEeeccCCCCeeeccHHHHHHHHHH--hCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhh
Confidence 9999999998532 2 25678899999874 2345688899999989998877 999999999999999999999882
Q ss_pred Cccc------cCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 276 YVKI------NLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 276 ~~~i------d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
...+ ..+. ..+|+++-|.-|-|-.|-|-+.+.
T Consensus 198 ~~~~~~~i~~a~~~---GRvda~vqS~dkNF~VPvGgai~A 235 (389)
T PF05889_consen 198 SSKCMHLIQQAWRV---GRVDAFVQSTDKNFMVPVGGAIMA 235 (389)
T ss_dssp -HHHHHHHHHHHHH---STCSEEEEEHHHHHCEESSHEEEE
T ss_pred HHHHHHHHHHHHhc---CCcceeeeecCCCEEecCCCcEEE
Confidence 1110 0011 144555555556665555533333
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-08 Score=98.79 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEE---EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-
Q 043646 122 MVHEASNYIKRCLGGGQADAII---FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS- 197 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vi---ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~- 197 (625)
-.+.+.+-.|+.||++.. ++ |+ |||.+ |...+..+ ++|||+ .+.++-.-|-.....
T Consensus 55 GRd~le~iyA~vfgaE~A--LVRpq~v-SGTHA-i~~~Lfg~---------------LrpGD~-ll~~tG~PYDTL~~VI 114 (403)
T PF06838_consen 55 GRDKLERIYADVFGAEDA--LVRPQFV-SGTHA-IALALFGV---------------LRPGDE-LLSITGKPYDTLEEVI 114 (403)
T ss_dssp HHHHHHHHHHHHCT-SEE--EEETTS--SHHHH-HHHHHHHH-----------------TT-E-EEESSSS--CCHHHHH
T ss_pred cHHHHHHHHHHHhCchhh--hhccccc-chHHH-HHHHHHhc---------------CCCCCe-EEEcCCCchhhHHHHh
Confidence 355677788999999744 33 55 67776 44444443 689997 233333333333333
Q ss_pred ---------HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc----ccccCHHHHHHHHHHc--
Q 043646 198 ---------WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT----GIYSDTRSIARLLHQY-- 262 (625)
Q Consensus 198 ---------~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T----G~~~~l~~I~~la~~~-- 262 (625)
++..|++...|++.++|.+|.+.++++++ +++|+|.+.-..-.+ =.+.+++++++++|+.
T Consensus 115 G~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~-----~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p 189 (403)
T PF06838_consen 115 GIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK-----PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINP 189 (403)
T ss_dssp TSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH-----TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-T
T ss_pred CCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc-----cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 24468899999999999999999999999 689999886432211 1124466666666664
Q ss_pred CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCC---CCceEEEEeccccc
Q 043646 263 GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGP---GTPGILLISKALYQ 317 (625)
Q Consensus 263 g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp---~g~G~l~v~~~~~~ 317 (625)
+++++||.+++=-......... |+|++..|.-|..||. .| |++..+++++.
T Consensus 190 ~~iifVDNCYGEFvE~~EP~~v---GADl~aGSLIKNpGGgiAptG-GYIaGr~~lVe 243 (403)
T PF06838_consen 190 DVIIFVDNCYGEFVETQEPTEV---GADLMAGSLIKNPGGGIAPTG-GYIAGRKDLVE 243 (403)
T ss_dssp TSEEEEE-TTTTTTSSS-GGGG---T-SEEEEETTSGGGTTT-SS--EEEEESHHHHH
T ss_pred CeEEEEeCCcceeccccCcccc---chhheeccceeCCCCCccCcC-CEEechHHHHH
Confidence 7999999997644333333333 8999999999998763 44 89999998843
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.99 E-value=8e-08 Score=101.22 Aligned_cols=225 Identities=16% Similarity=0.095 Sum_probs=127.4
Q ss_pred ccccCCCCCCceEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..| ..|+|.. ..|-..+.+.+++.+.+...... +.. ....+...++.++|.+.++...+
T Consensus 8 ~~l~d~dG---~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~-~~~-----~~~~~~~~~la~~L~~~~p~~~~- 77 (339)
T PF00202_consen 8 AYLWDVDG---REYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYV-SFS-----GFTHPEAAELAEKLAELFPGGLD- 77 (339)
T ss_dssp TEEEETTS---EEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSC-STT-----TSEEHHHHHHHHHHHHHSSTTEE-
T ss_pred CEEEECCC---CEEEECCCCccceecCCCccccchhHHHHhhhcccc-ccc-----ceeccchhhhhhhhhhccccccc-
Confidence 34444444 4588864 44556789999998877432111 100 11233456677888888854333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHc------------CCeEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQS------------LAEVVE 207 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~------------G~~vv~ 207 (625)
.+.|+.+|+++.-.++-.++.. ... ...++.. .|+.- ...|.....++... ...+..
T Consensus 78 ~v~f~~sGseAve~Alkla~~~-----~~~----~~~~~r~-~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~ 147 (339)
T PF00202_consen 78 RVFFANSGSEAVEAALKLARQY-----HNK----RAYTGRR-KILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVF 147 (339)
T ss_dssp EEEEESSHHHHHHHHHHHHHHH-----HHH----THHHTTT-EEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEE
T ss_pred eeeeccCchHHHHHHHHHhhcc-----ccc----ccccCCc-eEEEeeeeeeccCcccccccCCcccccccccccccccc
Confidence 8999988888833333322200 000 0122333 35544 44554443333321 124567
Q ss_pred EecCCCCC-----CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCC-Cc
Q 043646 208 IGLDDNGL-----LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YV 277 (625)
Q Consensus 208 v~~~~~~~-----ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g-~~ 277 (625)
+|.+.... -....+++.+.+ ...++..+|++..+....|.+.+ +++|.++|++||+++|+|+++... -.
T Consensus 148 ~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRt 226 (339)
T PF00202_consen 148 VPFPDPAADEEEQACLNALEELIAA-LNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRT 226 (339)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHHH-HHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTT
T ss_pred ccCCccchhhhHHHHHHHHHHHHHh-hcCCcEEEEEEeccccccCccccccchhhehcccccccccceeccccccccccc
Confidence 77653110 011123333332 22356789999998888887754 799999999999999999997742 11
Q ss_pred c--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 278 K--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 278 ~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
. .....++. .+|+++++ |.+++...+|++++++++
T Consensus 227 G~~~a~~~~gv-~PDiv~~g--K~l~gG~p~sav~~~~~i 263 (339)
T PF00202_consen 227 GKFFASEHYGV-DPDIVTFG--KGLGGGLPISAVLGSEEI 263 (339)
T ss_dssp SSSSGHHHHTS-SSSEEEEE--GGGGTTSSEEEEEEEHHH
T ss_pred CCccceecccc-cCcccccc--cchhhhhhcccccccchh
Confidence 1 11111111 57999998 999766668999999998
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-06 Score=87.96 Aligned_cols=327 Identities=13% Similarity=0.109 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhCCCCCCcEEEe--CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH-HHHHH
Q 043646 124 HEASNYIKRCLGGGQADAIIFC--GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LSWRQ 200 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift--~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~ 200 (625)
..+++.+++.+|.. .++-| |-|+...+.-++.-.+ .-.||.+ .++.+..|.... .-...
T Consensus 82 ~~L~~avkdifGfq---~~iPthQGRgAE~Il~~i~ik~~-------------~~~pg~~--~~~~sN~~FdTTr~h~~~ 143 (471)
T COG3033 82 YALADAVKDIFGFQ---YTIPTHQGRGAENILIPILIKKG-------------EQEPGSK--MVAFSNYHFDTTRGHIQI 143 (471)
T ss_pred HHHHHHHHHhcCce---eeeeccCCccHHHHHHHHHhhhc-------------cccCCcc--ccccccceecchhHHHHh
Confidence 44677888899974 33433 3355554444433222 1246654 444444454443 33555
Q ss_pred cCCeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc---cCHHHHHHHHHHcCCEEE
Q 043646 201 SLAEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFAC 267 (625)
Q Consensus 201 ~G~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vi 267 (625)
.|+.++-+++++ .|.+|++.|++.|++-...+-|-++....+++.-|.- ..++++.++|++|++.++
T Consensus 144 ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv 223 (471)
T COG3033 144 NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVV 223 (471)
T ss_pred cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEE
Confidence 688777666542 3689999999999863221224444444555556665 457899999999999999
Q ss_pred EeccCcC-----------CCccccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEeccc----cc-cCCCCCcccCC
Q 043646 268 FDFAASG-----------PYVKINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISKAL----YQ-LGSSPPSTCGG 328 (625)
Q Consensus 268 vD~A~~~-----------g~~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~----~~-l~~~~p~~~gg 328 (625)
.|++-.+ +|....++++ ....+|.++.|.-|=--.+.| |+|+++++. +. ++.+.-..
T Consensus 224 ~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~V~~--- 299 (471)
T COG3033 224 MDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYEECRTLVVVQ--- 299 (471)
T ss_pred eehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccHHHHHHHHHhheEee---
Confidence 9988332 2222222211 023578899999887655666 899998873 11 11110011
Q ss_pred ceEEeeccccccccccccchhhhhcCCChhHHHHH---HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI---RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~---~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~ 405 (625)
.|.|..-++. -.+++.-+.+....+.++.|+.+ .+||.+.|.+. |+.|+-
T Consensus 300 -------------------------eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~Rv~Q-v~YL~~~l~~~-GVpi~~ 352 (471)
T COG3033 300 -------------------------EGFPTYGGLAGRDMEALAVGLREGVNFDYLAHRVAQ-VQYLADGLEEA-GVPIVQ 352 (471)
T ss_pred -------------------------ccccccCcccchhHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHHhc-CCeeEe
Confidence 1112111111 12233333344445566655554 78899999886 777776
Q ss_pred CCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 406 NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 406 ~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
|. +++-.|.-....... .......+..++..|-.+.||.+..--.+. ++-+...-+
T Consensus 353 pa----GGHavfvda~~~lph------ip~eqFpaqala~ely~e~GiRavElG~~~-------~~rd~ktg~------- 408 (471)
T COG3033 353 PA----GGHAVFVDAGKFLPH------IPAEQFPAQALACELYKEAGIRAVELGSFS-------LGRDPKTGK------- 408 (471)
T ss_pred cC----CCceEEeehhhhcCC------CChhhCcHHHHHHHHHHHhCeeeeeeecee-------cccCCCccc-------
Confidence 64 355555432111000 011233456677777788898865321111 111100000
Q ss_pred hCCCCCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 486 KGYLGVKPGWTRITFP-YYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
. .--+-..+|+.++ ..-|.+.+|+++++++.+.+++..
T Consensus 409 -q-~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~~ 447 (471)
T COG3033 409 -Q-HPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAED 447 (471)
T ss_pred -c-CCCchheeeEeccccccchhHHHHHHHHHHHHHhcccc
Confidence 0 0001267999996 334789999999999999988744
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=78.74 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH------
Q 043646 124 HEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL------ 196 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~------ 196 (625)
+.+.+-.|+.+|+...- ..-|. |||.+ |..++..+ |+|||+..-++..+ |-....
T Consensus 68 dtLe~vyA~vf~aE~a~VRpq~i-sGTHA-I~~aLfg~---------------LRpgDell~i~G~P-YDTLeevIG~rg 129 (416)
T COG4100 68 DTLERVYAQVFGAEAALVRPQII-SGTHA-IACALFGI---------------LRPGDELLYITGSP-YDTLEEVIGLRG 129 (416)
T ss_pred hHHHHHHHHHhccccceeeeeee-cchhH-HHHHHHhc---------------cCCCCeEEEecCCc-chhHHHHhccCC
Confidence 44667778999997652 33566 67776 43333222 68999843333333 222222
Q ss_pred ----HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccC----ccccccCHHHHHHHHHHc--CCEE
Q 043646 197 ----SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN----VTGIYSDTRSIARLLHQY--GGFA 266 (625)
Q Consensus 197 ----~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n----~TG~~~~l~~I~~la~~~--g~~v 266 (625)
+++..|++-..+|+..+|.+|.+.++.++. ++||+|.+.-... |+=.+.+++++..+.++- ++++
T Consensus 130 ~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~-----~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~iv 204 (416)
T COG4100 130 EGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS-----DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIV 204 (416)
T ss_pred CCcccHHHhCcceeecccccCCcccHHHHHHhcC-----ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEE
Confidence 244567888899999999999999999998 6899988754321 233345677777777774 7999
Q ss_pred EEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC--CceEEEEecccc
Q 043646 267 CFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG--TPGILLISKALY 316 (625)
Q Consensus 267 ivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~l~v~~~~~ 316 (625)
+||.+++--......... |+|++..|.-|.-||.- .-|++..+++++
T Consensus 205 FVDNCYGEFvE~~EPt~v---GaDliAGSLIKNpGGgiaktGGYiaGk~~~v 253 (416)
T COG4100 205 FVDNCYGEFVEEKEPTHV---GADLIAGSLIKNPGGGIAKTGGYIAGKAELV 253 (416)
T ss_pred EEeccchhhhhccCcccc---chhhhccceeeCCCCceeeccceeechHHHH
Confidence 999986643333333333 89999999999866541 237888888774
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-05 Score=74.66 Aligned_cols=350 Identities=15% Similarity=0.108 Sum_probs=190.8
Q ss_pred CceEecc----CCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 76 RRLTYAD----HTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld----~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
+..-||| -+-.+.+.+.|+++....+.....|... ...++.+-+++..+.+-+.+ .+.|+.||+.+
T Consensus 45 ~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~RF-------lhd~lv~cA~~l~stlPeLs---vc~F~NSGSEA 114 (452)
T KOG1403|consen 45 EGTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNNRF-------LHDELVQCARTLTSTLPELS---VCFFVNSGSEA 114 (452)
T ss_pred CcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccchh-------hHHHHHHHHHHHhhcCCCce---EEEEecCCchh
Confidence 3344665 2345677889999998888544333211 12445555555555554532 67899889988
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-------cCC---eEEEE---ecCC--CC--
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-------SLA---EVVEI---GLDD--NG-- 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-------~G~---~vv~v---~~~~--~~-- 214 (625)
+=..+-.+..+. ...| |++-+..|+..+.+..+ .|. ++.+| |..+ .|
T Consensus 115 NDLALRLAR~ft-------------khqD---vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~ 178 (452)
T KOG1403|consen 115 NDLALRLARNFT-------------KHQD---VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKF 178 (452)
T ss_pred hHHHHHHHHhhc-------------ccCc---eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccc
Confidence 544443333211 2334 44444444444333211 121 22222 2211 11
Q ss_pred -----------CCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCc
Q 043646 215 -----------LLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYV 277 (625)
Q Consensus 215 -----------~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~ 277 (625)
..-.+.+++.+.+..... ...+.+..+..+--|.+.| .+.+++..|.+|...|.|+++- +|-+
T Consensus 179 r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRv 258 (452)
T KOG1403|consen 179 RDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRV 258 (452)
T ss_pred ccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhccccc
Confidence 122344555555322112 3345555666677788877 5789999999999999999964 2222
Q ss_pred cccCCCCCC--CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 278 KINLRSRNI--DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 278 ~id~~~~~~--~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
.-....... --+|+++.. |-+|-...++++...+++.+ . +++..+.|.|- ..|
T Consensus 259 G~hyWafq~y~fiPDIVtmg--KpmGNGhPVa~VattkeIA~--A-----f~atgv~YFNT----------------yGG 313 (452)
T KOG1403|consen 259 GSHYWAFQTYNFIPDIVTMG--KPMGNGHPVAAVATTKEIAQ--A-----FHATGVEYFNT----------------YGG 313 (452)
T ss_pred chhhhhhhhhccccchheec--ccCCCCCeeeEEeccHHHHH--H-----hccccceehhc----------------cCC
Confidence 111111100 045777665 76665555788888887732 1 22222333332 134
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEecc--CCCCCCccccc
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYS--TTNSSPENMKI 432 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~--~~~~~~~~~~~ 432 (625)
.|-.+++..+.+... .-+++.++.+...+++...|+++. ..+++++. | ++-.|+-.+ .+.
T Consensus 314 nPVsCAv~laVm~v~-----e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDv---R-GvGLFiGIdLVkD~-------- 376 (452)
T KOG1403|consen 314 NPVSCAVGLAVMRVC-----EDENLQEHAQQVGEKLEVLLRRLKQKHECIGDV---R-GVGLFIGIDLVKDR-------- 376 (452)
T ss_pred CchhHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHhhhccceecc---c-cceEEEeeeeeccc--------
Confidence 454444444444433 245778888888888888886642 34556553 2 222222211 110
Q ss_pred cCCCCC--ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 433 ERNKPL--HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 433 ~~~~~l--~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
..+++- ....++.+|.+.++|.+.+- |-..+.+.|-++..-++++++
T Consensus 377 ~tRtP~tk~A~~~v~rlke~y~VLlsaD-------------------------------GPh~NilKiKPPmCFneena~ 425 (452)
T KOG1403|consen 377 KTRTPDTKEAHWVVNRLKELYRVLLSAD-------------------------------GPHRNILKIKPPMCFNEENAD 425 (452)
T ss_pred ccCCCcHHHHHHHHHHHHHhhhEEEecC-------------------------------CCCCceeecCCCcccChhhHH
Confidence 011111 12356777878888888631 113477888888888999999
Q ss_pred HHHHHHHHHHHhhh
Q 043646 511 FILAALEFIAAYGH 524 (625)
Q Consensus 511 ~ll~aL~~~~~~~~ 524 (625)
+++..|.+++.-..
T Consensus 426 e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 426 EFVLGLDEILTVME 439 (452)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876443
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00011 Score=74.55 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=80.5
Q ss_pred HHHHHHHHhCC-CCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc-C
Q 043646 126 ASNYIKRCLGG-GQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS-L 202 (625)
Q Consensus 126 ~~~~ia~~~g~-~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G 202 (625)
..++|-+.+|- -.++ .|+| |+|+|+.+++++.+|.-.. -..+....||...+.|+++...-... .
T Consensus 51 ~Ir~LH~~VGNAvt~gr~IV~-GtGsTQL~~AalyALSp~~-----------~~~~~p~~VVa~aPYY~~Y~~qt~~f~s 118 (363)
T PF04864_consen 51 QIRRLHRVVGNAVTDGRYIVF-GTGSTQLFNAALYALSPNA-----------SPSSSPASVVAAAPYYSSYPEQTDFFDS 118 (363)
T ss_dssp HHHHHHHHH-SB--TTSEEEE-ECHHHHHHHHHHHHHCHHT------------TTSSSEEEEE-SS--CHHHHHCCCT-B
T ss_pred HHHHHHHHhccccccCcEEEE-cCCHHHHHHHHHHhcCCCC-----------CCCCCCceeEecCCCccchHHHHHhccc
Confidence 33344444543 2333 6777 5999999999998884210 02233345787888888775432211 1
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc-cccC
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-KINL 281 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~-~id~ 281 (625)
....+-.-..... . ...+.+-+=++++||||.|.+- +. +++.-+..+|.|-|++.|+. ||.-
T Consensus 119 ~~y~w~Gda~~~~----------~--~~~~~~~IElVTSPNNPDG~lr--~~---V~~g~~~k~I~D~AYYWPhyTpI~~ 181 (363)
T PF04864_consen 119 RLYKWAGDASNFK----------N--SDNPSPYIELVTSPNNPDGQLR--EA---VLNGSSGKVIHDLAYYWPHYTPITA 181 (363)
T ss_dssp TTEEEEEECCCGT----------T---S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S
T ss_pred cCccccccHHhhc----------c--CCCCCCeEEEEeCCCCCccccc--ch---hcCCCCcceeeeeeeecccccccCC
Confidence 1222222111111 1 0113567888999999999872 11 23445667899999998864 5543
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 282 RSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
.. .-|++.|+.+|.=| -.| +|+.+++++.
T Consensus 182 ~a----D~DiMLFT~SK~TG-HAGSR~GWAlVKD~~ 212 (363)
T PF04864_consen 182 PA----DHDIMLFTLSKLTG-HAGSRFGWALVKDEE 212 (363)
T ss_dssp -B------SEEEEEHHHHCS--GGG-EEEEEES-HH
T ss_pred CC----CCceEEEEEecccC-ccccccceeeecCHH
Confidence 32 56999999999865 433 8999999876
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00025 Score=70.55 Aligned_cols=252 Identities=15% Similarity=0.151 Sum_probs=152.0
Q ss_pred EEEEcCCCCchhHHHHHHcCC-eEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC---HHHH
Q 043646 183 VVFLGPYEHHSNLLSWRQSLA-EVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD---TRSI 255 (625)
Q Consensus 183 ~Vlv~~~~h~s~~~~~~~~G~-~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~---l~~I 255 (625)
.|+++.++|......|...|. ++...+.=. +-.+|++-+...|+.. +.-.++++.+| +||||.=.. -.+|
T Consensus 127 ~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A---Pe~si~iLhaCAhNPTGmDPT~EQW~qi 203 (410)
T KOG1412|consen 127 TVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESA---PEGSIIILHACAHNPTGMDPTREQWKQI 203 (410)
T ss_pred eeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhC---CCCcEEeeeccccCCCCCCCCHHHHHHH
Confidence 599999999999888998994 555555422 3478988888888742 44457777777 899997422 3568
Q ss_pred HHHHHHcCCEEEEecc-CcCCCccccCCCC-----CCCCCc-EEEEcCCCCCCCCC-CceEEE--EeccccccCCCCCcc
Q 043646 256 ARLLHQYGGFACFDFA-ASGPYVKINLRSR-----NIDGYD-AIFLATHKFLGGPG-TPGILL--ISKALYQLGSSPPST 325 (625)
Q Consensus 256 ~~la~~~g~~vivD~A-~~~g~~~id~~~~-----~~~~~D-~v~~S~hK~lggp~-g~G~l~--v~~~~~~l~~~~p~~ 325 (625)
+++.++.+.+.++|-| |++..-.++-+.| ...|.. |++-|+.|-||--. .+|.|. +++.... ...
T Consensus 204 a~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i-~~v---- 278 (410)
T KOG1412|consen 204 ADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVI-AGV---- 278 (410)
T ss_pred HHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhHH-HHH----
Confidence 9999999999999988 4544445554443 112443 55569999987322 256543 3333210 000
Q ss_pred cCCceEEeeccccccccccccchhhhhcCCChhHHHH-H-H------HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 326 CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-I-R------AALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~-~------aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
..++.- ..|.....|+..+. + . +-.+.|. ..+..+..|+.+++..+++.|..
T Consensus 279 ----------------~SQl~l-viR~~~SNPPAyGArIV~kvL~tP~lre~W~---~sik~MssRI~~MR~aLrd~L~a 338 (410)
T KOG1412|consen 279 ----------------KSQLTL-VIRSNWSNPPAYGARIVHKVLSTPELREQWI---QSIKTMSSRIKKMRTALRDHLVA 338 (410)
T ss_pred ----------------HHHHHH-HHhhccCCCcchhhHHHHHHhcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 12222333332221 1 1 1123332 23667888999999999999977
Q ss_pred C--CcEE-EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 398 N--QNIQ-VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 398 l--~gv~-v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
+ ||-. -+ ..+.+.++|-- |.+.. ++.|.+.+.|.+..
T Consensus 339 L~TPGtWDHI----~~QiGMFSyTG------------------Ltp~q-V~~li~~h~vyLl~----------------- 378 (410)
T KOG1412|consen 339 LKTPGTWDHI----TQQIGMFSYTG------------------LTPAQ-VDHLIENHKVYLLS----------------- 378 (410)
T ss_pred cCCCCcHHHH----HhhccceeecC------------------CCHHH-HHHHHHhceEEEec-----------------
Confidence 6 3210 00 23567777643 33444 45566778888752
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.| ||++... +...+|++.++|.+.++..
T Consensus 379 ------------------~G--RInisGL-N~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 379 ------------------DG--RINISGL-NMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred ------------------CC--cEeeecc-ccccHHHHHHHHHHHHHhh
Confidence 24 6666322 4478899999998877653
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0022 Score=69.61 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
+-.-.....|+++.|.+-.+.-++- -||.++=..++... .....+ +++....|+-.+..++.
T Consensus 163 EsllNyQTmi~dlTGL~~aNASLLD-EgTAaaEAm~l~~~---------------~~krkk--~vvd~~~hpqtlsV~~T 224 (1001)
T KOG2040|consen 163 ESLLNYQTMITDLTGLPMANASLLD-EGTAAAEAMALCNR---------------INKRKK--FVVDSNCHPQTLSVVKT 224 (1001)
T ss_pred HHHhhhHHhhhhccCCcccchhhhc-cchhHHHHHHHHHh---------------hcccce--EEecCCCCcchhhhhhc
Confidence 3334456788999999865433443 55555332222211 223333 99999999998877654
Q ss_pred c----CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 201 S----LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 201 ~----G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
. |++++..+ +.+ +-.. .....-+.+..| +.-|.+.|.+++++.+|+.|.++++-.---.-.
T Consensus 225 Ra~~~~i~v~~~~--------~~~---~~~s---~~~v~gvlvQYP-~t~G~i~d~~el~~~a~~~~s~vv~atDLLaLt 289 (1001)
T KOG2040|consen 225 RAKGFGIKVVVSD--------IKE---ADYS---SKDVSGVLVQYP-DTEGSVLDFDELVELAHANGSLVVMATDLLALT 289 (1001)
T ss_pred cccccceeEEecC--------HHH---hhcc---ccceeEEEEEcC-CCCCcccCHHHHHHHhhccCceEEEeehhhHHH
Confidence 2 33433222 221 1111 123455555554 456999999999999999998866532100001
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCC-----ceEEEEeccccccCCCCCcccCCceEEeecccccccccc-----cc
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGT-----PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY-----LE 346 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-----~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~-----~~ 346 (625)
+--...++ |+|+++.|.+.+ |.|.| .||+.+++++. +.++....| -+.+. .....| -+
T Consensus 290 iLrpPgef---GaDIavGSsQRF-GVPlGYGGPHAaFfAv~~~l~--R~mPGRiiG-vtkD~-----~gk~a~RLALQTR 357 (1001)
T KOG2040|consen 290 ILRPPGEF---GADIAVGSSQRF-GVPLGYGGPHAAFFAVSESLV--RMMPGRIIG-VTKDA-----LGKEAYRLALQTR 357 (1001)
T ss_pred ccCChhhc---Cceeeecccccc-CccccCCCchHHHHHHHHHHH--hhCCCceEe-eeecc-----cccHHHHHHHHHH
Confidence 11111223 899999999886 44533 46777777763 333322222 11111 011111 12
Q ss_pred chhhhhcCCChhHHHHH--H---HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceE-EEEec
Q 043646 347 DIEERENGGTPQIVQMI--R---AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAIL-SFLVY 420 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~--~---aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~-~f~~~ 420 (625)
...-|.+..|.|++..- . +|.-.......|.+.|..|++.++..+...|+.. |-++.... .| +.-+.
T Consensus 358 EQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~------fFDTLkI~ 430 (1001)
T KOG2040|consen 358 EQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKP------FFDTLKIR 430 (1001)
T ss_pred HHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhcccc------ccceEEEE
Confidence 33445667788876541 1 1111122345678899999999999999999865 45554331 11 11111
Q ss_pred cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec
Q 043646 421 STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF 500 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~ 500 (625)
-+ -+.+++..+..+ .+|.+|.- .++.+-+|+
T Consensus 431 ~~---------------~s~~~~l~rA~~-~~iNlr~~---------------------------------ed~tigvsl 461 (1001)
T KOG2040|consen 431 CG---------------CSAEEVLDRAAK-RQINLRLV---------------------------------EDGTIGVSL 461 (1001)
T ss_pred ec---------------CcHHHHHHHHHh-hcCceEEe---------------------------------ecCceEEee
Confidence 11 134566666645 46777621 258899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 043646 501 PYYMSNEEFEFILAALE 517 (625)
Q Consensus 501 ~~~~t~edid~ll~aL~ 517 (625)
--..+++|+|.++..+.
T Consensus 462 DETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 462 DETVTEKDVDDLLWVFN 478 (1001)
T ss_pred cccccHHHHHHHHHHHc
Confidence 99999999999998775
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0054 Score=62.31 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHhhhCCCC-eEEEEecccCccccc----cCHHHHHHHHHHcCCEEEEeccCcCCCc--------cccCCC
Q 043646 217 DIEALRSQLELYKAAKRP-MLGSFSACSNVTGIY----SDTRSIARLLHQYGGFACFDFAASGPYV--------KINLRS 283 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~-~lv~~~~~~n~TG~~----~~l~~I~~la~~~g~~vivD~A~~~g~~--------~id~~~ 283 (625)
.++++++.|..+...+.| ..+++....+.-|-- .=.+.+.+++++||+.++||++|..|-. ..++..
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~ 333 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS 333 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence 467788888865443444 567777777777754 2278999999999999999999765432 233332
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH
Q 043646 284 RNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI 363 (625)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 363 (625)
.+|+++|| |=|- .+ | .+-..++ +.-.|+.. -.-..|.|.-.-++
T Consensus 334 ----PpD~vTFS--KK~q-~g--G-ffh~~~f---rpn~pYri-----------------------fNTWmGdP~k~lll 377 (484)
T KOG1405|consen 334 ----PPDVVTFS--KKFQ-TG--G-FFHDEEF---RPNEPYRI-----------------------FNTWMGDPSKNLLL 377 (484)
T ss_pred ----Cccceehh--hhhh-cC--c-cccCccc---CCCchHHH-----------------------hhhhcCChHHHHHH
Confidence 67988887 4442 11 3 2333333 11112210 00012344333333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
...+.. +-.+.+.+......+++...|.++ |+. +... ..|+..+++....+. -
T Consensus 378 ~~vv~~-----I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~--~~~~-RGrGTF~a~d~ps~~---------------~ 434 (484)
T KOG1405|consen 378 EEVVQE-----IKREDLLNNVAHVGKALLKGLLELQAKYPGK--INNL-RGRGTFIAWDCPSGS---------------I 434 (484)
T ss_pred HHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHhCchh--hhcc-cccceEEEEeCCChH---------------H
Confidence 333332 334556666666677777777554 321 1111 124444444443221 1
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.+.++..+ ..+|+.+ +||. ...||+-+..--++...+-+++.+.++
T Consensus 435 Rdk~i~~~-~~nGv~~-GGCg--------------------------------~~siRfRPsLvf~~~Ha~i~l~~~~k~ 480 (484)
T KOG1405|consen 435 RDKLILIA-RLNGVNL-GGCG--------------------------------DKSIRFRPSLVFRKHHADIFLDIFDKI 480 (484)
T ss_pred HHHHHHHH-HHcCcee-cccc--------------------------------cceeeeccceeehhhhHHHHHHHHHHH
Confidence 23455555 5578876 4542 356888887777889999999999988
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
++.
T Consensus 481 l~~ 483 (484)
T KOG1405|consen 481 LAG 483 (484)
T ss_pred hcc
Confidence 754
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.016 Score=58.83 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=81.3
Q ss_pred EEEEcCCCCchhHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc---cCHHHHHH
Q 043646 183 VVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY---SDTRSIAR 257 (625)
Q Consensus 183 ~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~ 257 (625)
.|+++.++|......+...|+.+..+..- .+..+|.+.+.+-+.+. .+...+++=.-.+||||+= ...++|.+
T Consensus 148 ~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~--p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~ 225 (427)
T KOG1411|consen 148 DIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEA--PEGSIILLHACAHNPTGVDPTKEQWEKISD 225 (427)
T ss_pred ceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcC--CCCcEEEeehhhcCCCCCCccHHHHHHHHH
Confidence 49999999988888888899988776542 25678888777666631 1223333334457999974 23577899
Q ss_pred HHHHcCCEEEEecc-CcCCCccccCCCC-----CCCCCcE-EEEcCCCCCCCCCC-ceEE
Q 043646 258 LLHQYGGFACFDFA-ASGPYVKINLRSR-----NIDGYDA-IFLATHKFLGGPGT-PGIL 309 (625)
Q Consensus 258 la~~~g~~vivD~A-~~~g~~~id~~~~-----~~~~~D~-v~~S~hK~lggp~g-~G~l 309 (625)
+.++.+.+-++|-| |++..-.+|-+.. ..+|.++ ++-|+.|.+|--+. +|.+
T Consensus 226 ~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 226 LIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred HhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence 99999999999998 3333333333221 1124444 45589999874332 5655
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.2 Score=53.24 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=88.6
Q ss_pred eEEEEcCCCCchhH-HHHHHcCCeEEEEe--cC--C---CCCCCHHHHHHHHHHhhhCCC-CeEEEEecccCccccccCH
Q 043646 182 WVVFLGPYEHHSNL-LSWRQSLAEVVEIG--LD--D---NGLLDIEALRSQLELYKAAKR-PMLGSFSACSNVTGIYSDT 252 (625)
Q Consensus 182 ~~Vlv~~~~h~s~~-~~~~~~G~~vv~v~--~~--~---~~~ld~~~L~~~l~~~~~~~~-~~lv~~~~~~n~TG~~~~l 252 (625)
+++++++..|.-.. ..+++.|+..+.|. ++ . .|++|...+++.|+++...++ |-+++-.-..+..|..+-+
T Consensus 232 Pt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi 311 (838)
T KOG0630|consen 232 PTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMI 311 (838)
T ss_pred ceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHH
Confidence 57899988887664 34677887443332 22 2 358999999999998766554 5566666677788999999
Q ss_pred HHHHHHHHHcC-CEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 253 RSIARLLHQYG-GFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 253 ~~I~~la~~~g-~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
-.|.++|++|+ .|++.-+-.-.... |-+......+..|.+.....-|+|.|.. -+++..+.+
T Consensus 312 ~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSa-PiV~LHRPl 377 (838)
T KOG0630|consen 312 LKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSA-PIVLLHRPL 377 (838)
T ss_pred HHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCC-ceEEeeccc
Confidence 99999999987 88887753111111 1111110112568889998999998874 344444443
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.046 Score=50.44 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhC----CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 119 MTKMVHEASNYIKRCLG----GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g----~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
..++.+.+.+++.+.+| .+++ +|++| +|++.++..++.++ ++|||. |+++.+.|+
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~pd-~Ivvt-~Ga~~al~~l~~~l---------------~dpGD~--VlVp~P~Y~ 152 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDAD-MIVLS-AGATAANEIIMFCI---------------ADPGDA--FLVPTPYYA 152 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccchh-heEEc-CCHHHHHHHHHHHH---------------cCCCCE--EEEeCCCCC
Confidence 45677788888888877 3444 89998 89999999998888 589996 888887775
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.11 Score=51.05 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=82.9
Q ss_pred CCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CC-CCCCHHHHHHHHHHhhhCCCCe-EEEEecccC--cccccc
Q 043646 177 RDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DN-GLLDIEALRSQLELYKAAKRPM-LGSFSACSN--VTGIYS 250 (625)
Q Consensus 177 ~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~-~~ld~~~L~~~l~~~~~~~~~~-lv~~~~~~n--~TG~~~ 250 (625)
+|.-+ .|+-.....-|..+++...|.+++.|.-- .+ -..|++.+++.+++- .+. ++++....+ ..-.-+
T Consensus 100 rpkak-yiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~----g~dcilci~sttscfapr~pd 174 (432)
T KOG3843|consen 100 RPKAK-YIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEEL----GEDCILCIHSTTSCFAPRSPD 174 (432)
T ss_pred CCccc-EEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHh----CCceEEEEeecccccCCCCCc
Confidence 34444 46666777777778888889988777532 22 257888998888752 233 333322111 112225
Q ss_pred CHHHHHHHHHHcCCEEEEeccCcCCCccccCCC----CCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 251 DTRSIARLLHQYGGFACFDFAASGPYVKINLRS----RNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 251 ~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~----~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
.+++|+.+|..|+++-+|..|+++-.... ++. .....+|.++-|.-|.|..|-| |.++
T Consensus 175 ~leaiaaica~~diphivnnayglqsee~-i~~iaa~~~~grida~vqsldknf~vpvg-gaii 236 (432)
T KOG3843|consen 175 NLEAIAAICAAHDIPHIVNNAYGLQSEEC-IHKIAAAAECGRIDAFVQSLDKNFMVPVG-GAII 236 (432)
T ss_pred hHHHHHHHHHccCchhhhccccccchHHH-HHHHHHHhhhccHHHHHHHhhhcceeecc-hhHh
Confidence 59999999999999999999877643221 111 1224689999999999999987 4444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 625 | ||||
| 1t3i_A | 420 | Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De | 4e-04 |
| >pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-23
Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 100/460 (21%)
Query: 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135
L Y D AS + + D Y H + + T+ + +
Sbjct: 22 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 81
Query: 136 GGQADAIIFCGAGTTAAI---------KRLQEVMGITVPSIMRDKLITSLRDEERWVVFL 186
A+ ++F GTT I ++ G D + +
Sbjct: 82 ARSAEELVFV-RGTTEGINLVANSWGNSNVRA--G----------------DN----III 118
Query: 187 GPYEHHSNLLSWRQSLAE-----VVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSA 241
EHH+N++ W Q L + I L+ +G L +E L + ++ L + +
Sbjct: 119 SQMEHHANIVPW-QMLCARVGAELRVIPLNPDGTLQLETLPTLF-----DEKTRLLAITH 172
Query: 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLAT--HKF 299
SNV G + + L HQ+G D A + + +++++ + D F HK
Sbjct: 173 VSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD-----FYVFSGHKL 227
Query: 300 LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359
G G GIL + +AL L PP GG + V+ E T + R GTP
Sbjct: 228 YGPTGI-GILYVKEAL--LQEMPPWEGGGSMIATVS-LSEGTT-W-TKAPWRFEAGTPNT 281
Query: 360 VQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSF 417
+I AAL +V +G I + E + AL ++ ++ + G R +++F
Sbjct: 282 GGIIGLGAALE-YVSA-LGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAF 337
Query: 418 LVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477
+ H V + D +GI R G CA P L+A
Sbjct: 338 NL----------------GKHHAYDVGSFL-DNYGIAVRTGHHCAMP----LMA------ 370
Query: 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517
Y V P R + Y ++EE + ++ L+
Sbjct: 371 ----------YYNV-PAMCRASLAMYNTHEEVDRLVTGLQ 399
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 98.3 bits (246), Expect = 3e-22
Identities = 95/462 (20%), Positives = 155/462 (33%), Gaps = 101/462 (21%)
Query: 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135
L Y D+ A+ + R + + +++ N H + R T N + + +
Sbjct: 27 HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN 86
Query: 136 GGQADAIIFCGAGTTAAI---------KRLQEVMGITVPSIMRDKLITSLRDEERWVVFL 186
I++ T AI L+ G DE +
Sbjct: 87 ARSPREIVYT-RNATEAINLVAYSWGMNNLKA--G----------------DE----IIT 123
Query: 187 GPYEHHSNLLSWRQSLAE-----VVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSA 241
EHHSNL+ W Q +A + + LD+ D+E ++ L +++ L +
Sbjct: 124 TVMEHHSNLVPW-QMVAAKTGAVLKFVQLDEQESFDLEHFKTLL-----SEKTKLVTVVH 177
Query: 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLAT--HKF 299
SN G + IA+L HQ G D S P+ ++++ + D +L HK
Sbjct: 178 ISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCD-----WLVASGHKM 232
Query: 300 LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359
G G L + + L + PP GG + V ++ + GTP I
Sbjct: 233 CAPTGI-GFLYGKEEI--LEAMPPFFGGGEMIAEV---FFDHFTT-GELPHKFEAGTPAI 285
Query: 360 VQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNT--SVKRQAIL 415
+ I AA+ + +G E I E + +++ G R A+
Sbjct: 286 AEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALA 343
Query: 416 SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475
SF V LH VAT+ D GI R G C P L
Sbjct: 344 SFNV----------------AGLHASDVATMV-DQDGIAIRSGHHCTQP----LHR---- 378
Query: 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517
G R + +Y + EE + L +L+
Sbjct: 379 ------------LFDA-SGSARASLYFYNTKEEIDLFLQSLQ 407
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-21
Identities = 57/428 (13%), Positives = 121/428 (28%), Gaps = 108/428 (25%)
Query: 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITS 175
+R ++ A + + ++ GA + L E
Sbjct: 64 ARRSAAVLDAAREAVADLVNA-DPGGVVL-GADRAVLLSLLAEASSSRA----------G 111
Query: 176 LRDEERWVVFLGPYEHHSNLLSWRQSLAE-----VVEIGLD-DNGLLDIEALRSQLELYK 229
L E V + + +N+ W A V +D + G L S +
Sbjct: 112 LGYE----VIVSRLDDEANIAPW-LRAAHRYGAKVKWAEVDIETGELPTWQWESLIS--- 163
Query: 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289
K L + ++ S G +D R++ +L+H G D +A+ PY +++R + D
Sbjct: 164 --KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDAD-- 219
Query: 290 DAIFLAT--HKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347
+ H + G P ++ ++ + S + Y
Sbjct: 220 ---VVTVNAHAWGGPPIG-AMVFRDPSV--MNSFGS--------------VSTNP-Y-AT 257
Query: 348 IEERENGGTPQIVQMI--RAALAF------------WVKEYIGYEVIKKQEDVYIESALG 393
R G Q + A++ + + + + + + +
Sbjct: 258 GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMV 317
Query: 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453
+ + ++G + ++SF V + V GI
Sbjct: 318 SLRSLPLVMLIG-RPEAQIPVVSFAV----------------HKVPADRVVQRL-ADNGI 359
Query: 454 QA-RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFI 512
A + +L G V G + +Y + E + +
Sbjct: 360 LAIANTGSRVLD----VL----------------GVNDV-GGAVTVGLAHYSTMAEVDQL 398
Query: 513 LAALEFIA 520
+ AL +
Sbjct: 399 VRALASLG 406
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 5e-19
Identities = 60/374 (16%), Positives = 106/374 (28%), Gaps = 82/374 (21%)
Query: 76 RRLTYADHTASG----RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131
TY + G +L I N S Q + +++ + +
Sbjct: 15 ANKTYFNFGGQGILPTVALEAITAMYGY----LQENGPFS-IAANQHIQQLIAQLRQALA 69
Query: 132 RCLGGGQADAIIFCGAGTTAAI------KRLQEVMGITVPSIMRDKLITSLRDEERWVVF 185
+ I T + G D+++ +
Sbjct: 70 ETFNV-DPNTITIT-DNVTTGCDIVLWGLDWHQ--G--------DEILLT---------- 107
Query: 186 LGPYEHHSNLLSWRQSLAE-------VVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238
EH + Q++A + N L + L + L
Sbjct: 108 --DCEHPGIIAIV-QAIAARFGITYRFFPVAATLNQGDAAAVLANHLG-----PKTRLVI 159
Query: 239 FSACSNVTGIYSDTRSIARLLHQYGGFAC----FDFAASGPYVKINLRSRNIDGYDAIFL 294
S TG I + ++ G D A S + ++ +D +
Sbjct: 160 LSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVD-----YY 214
Query: 295 AT--HKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351
A HK+ GP G G L I LG P+ G ++ Y + T + E +
Sbjct: 215 AFTGHKWFAGPAGV-GGLYIHGDC--LGEINPTYVGWRSITYGAKGEP--TGWAEGGKRF 269
Query: 352 ENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQED----VYIESALGRILPNQNIQVLG 405
E T Q AAL + G + Q ++ L ++ ++ L
Sbjct: 270 E-VATSAYPQYAGLLAALQ-LHQR-QGTAEERYQAICQRSEFLWRGLNQL---PHVHCLA 323
Query: 406 NTSVKRQAILSFLV 419
TS + ++SF V
Sbjct: 324 -TSAPQAGLVSFTV 336
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 40/288 (13%), Positives = 88/288 (30%), Gaps = 56/288 (19%)
Query: 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMR--DKLITSLRDEERWVVFLGPYEHHSNLL 196
D G A VM S+ + ++ H+S+ +
Sbjct: 69 CDVARVT-NGAREAK---FAVMH----SLAKKDAWVVMD------------ENCHYSSYV 108
Query: 197 SWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRS 254
+ ++ + + D + + E +E K +L + G D +
Sbjct: 109 AAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKK 168
Query: 255 IARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLIS 312
IA++ +Y + A + + ++L+ D F+ HK + G G++
Sbjct: 169 IAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGAD-----FIVGSGHKSMAASGPIGVM--- 220
Query: 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF-WV 371
G + + Y E G T + +I +F V
Sbjct: 221 ---------------GMKEEWAEIVLRRSEKYKNKEVELL-GCTARGATIITLMASFPHV 264
Query: 372 KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLV 419
+E I + ++ + + ++ I+ LG + ++ F
Sbjct: 265 RERIKRWDEEVEKARRFAAEMEKL----GIKQLG-DNPHNHDLMFFHA 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 4e-14
Identities = 88/658 (13%), Positives = 190/658 (28%), Gaps = 190/658 (28%)
Query: 31 STRQ--TCSEFKNDHHPPHSKPSEEKLAW-LRSQ-------IIGNDVEFDYSFGKRRLTY 80
+ + E + + +L W L S+ + + +Y F +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 81 ADHTASGRSLRYIE--DYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138
S + YIE D + N+ F + V R+ + + +++ L +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVF------AKYNV-SRL-QPYLK----LRQALLELR 148
Query: 139 ADAIIFC----GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE-RWVVFLGPYEHHS 193
+ G+G T + + V + D + W+
Sbjct: 149 PAKNVLIDGVLGSGKT--------WVALDV---CLSYKVQCKMDFKIFWLNL-KNCNSPE 196
Query: 194 NLLSWRQSLAEVVEIGLDDNGLLDI-EALRSQLELYKAAKRPMLGS--FSAC----SNVT 246
+L Q L + +I + D ++ ++ +A R +L S + C NV
Sbjct: 197 TVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV- 253
Query: 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTP 306
+ ++ F+ + KI L +R D FL T
Sbjct: 254 ---QNAKAW----------NAFNLSC-----KILLTTRFKQVTD--------FLSAATTT 287
Query: 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL---------EDIEERENGGTP 357
I L ++ + L +D+ P
Sbjct: 288 HISL--------------------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 358 QIVQMIRAAL----AFWVKEYIGYEVIKKQEDVYIESALGR--------------ILP-N 398
+ + +I ++ A W + + K + IES+L + P +
Sbjct: 328 RRLSIIAESIRDGLATW--DNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 399 QNI--QVLG-----NTSVKRQAILSFLV-YSTTNSSPENMKIERNKPLHGPFVATLFNDL 450
+I +L +++ L YS P+ I + +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IP---------SI 431
Query: 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK--PGWTRITFPYYMSNEE 508
Y + + +L RS + Y K I P Y+
Sbjct: 432 --------------YLELKVKLENEYALH-RSIVDH-YNIPKTFDSDDLI--PPYLDQYF 473
Query: 509 FEFI---LAALEFIAAYGHRF--LPLYHFNVKAGNWCSSQKAIKDLIDKETNNNINNPLA 563
+ I L +E + R + + + QK + T N + +
Sbjct: 474 YSHIGHHLKNIE----HPERMTLFRMVFLDF---RFL-EQK----IRHDSTAWNASGSIL 521
Query: 564 SAIQDLRISEKH-RNRDTEHLKKINKYASYLDNAKTIAGLLPEFPC--QRSLSEDIDP 618
+ +Q L+ + + + D ++ + +N +L + + ++ + +L + +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTDLLRIALMAEDEA 578
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 9e-14
Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 22/253 (8%)
Query: 174 TSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233
+ R ER V+ ++L + LA++++ G + E L + +
Sbjct: 112 QATRSPERRVIVTETSNFPTDLYIA-EGLADMLQQGYTLRLVDSPEELPQAI-----DQD 165
Query: 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIF 293
+ + + TG D +++ L H+ G A +D A S V ++L G D
Sbjct: 166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQ---AGADYAI 222
Query: 294 LATHKFL-GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352
T+K+L GGPG+ + +S L P G + F + + R
Sbjct: 223 GCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFGHS--RQFAMEPRYEPSNGIARY 278
Query: 353 NGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDV---YIESALGRILPNQNIQVLG-N 406
GT I + L + + ++++ + + + ++
Sbjct: 279 LCGTQPITSLAMVECGLDVFAQ--TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPR 336
Query: 407 TSVKRQAILSFLV 419
KR + +SF
Sbjct: 337 EHAKRGSHVSFEH 349
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 51/337 (15%), Positives = 100/337 (29%), Gaps = 64/337 (18%)
Query: 16 TKGHSNSKTRSESTSSTRQTCSEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGK 75
+ S S ST ++R + P +S P E QII +++ D +
Sbjct: 4 SHAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAY-----QIINDELMLDGNPRL 58
Query: 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135
++ + I I N + D T++ + N I
Sbjct: 59 NLASFVTTWMEPECDKLIMSSINKNYV---------DMDEYPVTTELQNRCVNMIAHLFN 109
Query: 136 GGQADAIIFCGAGTT-----------AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVV 184
+A G GT A ++ Q + + ++T
Sbjct: 110 APLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVT---------- 159
Query: 185 FLGPYEHHSNLLSWRQSLA----EVVEIGLDDNGL-LDIEALRSQLELYKAAKRPMLGSF 239
W + E+ E+ L + +D + ++ +LGS
Sbjct: 160 ---GANVQV---CWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGST 213
Query: 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDF-----AASGPYVKINLRSR-----NIDGY 289
+ G + D + + LL + +D AASG ++ L +
Sbjct: 214 -----LNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLV 268
Query: 290 DAIFLATHKFLGGP-GTPGILLISKAL--YQLGSSPP 323
+I ++ HK+ G ++ +K +L
Sbjct: 269 KSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHIN 305
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 6e-05
Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 55/220 (25%)
Query: 102 LPF----YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADA--IIFCGAGTTA---A 152
+ F YGN +++ G + +A + + LG I F T +
Sbjct: 22 IVFYREKYGNPNSAHGM-GIEANLHMEKAREKVAKVLG---VSPSEIFFTSCATESINWI 77
Query: 153 IKRLQEVMGITVPSIMRDK---LITSLRDEERWVVFLGPYEHHSNLLSWRQSLA----EV 205
+K TV + +IT+ P EH + L + + L+ +V
Sbjct: 78 LK--------TVAETFEKRKRTIITT------------PIEHKAVLETMKY-LSMKGFKV 116
Query: 206 VEIGLDDNGLLDIEALRSQLELYKAAKRP--MLGSFSACSNVTGIYSDTRSIARLLHQYG 263
+ +D G++ +E L + L S A +N G + R++ +
Sbjct: 117 KYVPVDSRGVVKLEEL-------EKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKN 169
Query: 264 GFACF--DFAASGPYVKINLRSRNIDGYDAIFLATHKFLG 301
D + + +L + D + HKF G
Sbjct: 170 KETLVHVDAVQTIGKIPFSLEKLEV---DYASFSAHKFHG 206
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 2e-04
Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 54/218 (24%)
Query: 102 LPF----YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADA--IIFCGAGTTA---A 152
LP+ +GN + SY G + + V EA + + + ++F T A A
Sbjct: 21 LPYMTESFGNPSSVHSY-GFKAREAVQEAREKVAKLVN---GGGGTVVFTSGATEANNLA 76
Query: 153 IKRLQEVMGITVPSIMRDK---LITSLRDEERWVVFLGPYEHHSNLLSWRQSLA----EV 205
I K ++ S EH S + + L EV
Sbjct: 77 II--------GYAMRNARKGKHILVS------------AVEHMSVINPAKF-LQKQGFEV 115
Query: 206 VEIGLDDNGLLDIEALRSQLELYKAAKRP--MLGSFSACSNVTGIYSDTRSIARLLHQYG 263
I + G +D+ + R +L S +N G I+ +L
Sbjct: 116 EYIPVGKYGEVDVSFI-------DQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKA 168
Query: 264 GFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLG 301
D AS +++++ D + ++++ G
Sbjct: 169 ALHI-DATASVGQIEVDVEKIGA---DMLTISSNDIYG 202
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 49/212 (23%), Positives = 78/212 (36%), Gaps = 48/212 (22%)
Query: 104 FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA---AIKRLQEVM 160
+GN + G + + V A N I +G I+F T + AIK
Sbjct: 51 TFGNPASRSHRFGWQAEEAVDIARNQIADLVGA-DPREIVFTSGATESDNLAIK------ 103
Query: 161 GITVPSIMRDK---LITSLRDEERWVVFLGPYEHHSNLLSWRQSLA----EVVEIGLDDN 213
G + + K +ITS EH + L + RQ L EV + N
Sbjct: 104 G--AANFYQKKGKHIITS------------KTEHKAVLDTCRQ-LEREGFEVTYLAPQRN 148
Query: 214 GLLDIEALRSQLELYKAAKRP--MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF--D 269
G++D++ L +AA R +L S +N G+ D +I + G + D
Sbjct: 149 GIIDLKEL-------EAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARG--IIYHVD 199
Query: 270 FAASGPYVKINLRSRNIDGYDAIFLATHKFLG 301
S + I+L + D + + HK G
Sbjct: 200 ATQSVGKLPIDLSQLKV---DLMSFSGHKIYG 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 100.0 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 100.0 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 100.0 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 100.0 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.98 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.97 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.97 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.97 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.97 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.96 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.96 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.96 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.96 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.96 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.96 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.96 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.96 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.96 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.96 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.95 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.95 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.95 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.95 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.95 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.95 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.95 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.95 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.95 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.95 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.95 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.95 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.95 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.95 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.94 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.94 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.94 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.94 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.94 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.94 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.94 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.94 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.94 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.94 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.94 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.94 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.94 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.94 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.94 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.94 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.94 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.94 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.94 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.94 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.94 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.94 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.93 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.93 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.93 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.93 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.93 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.93 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.93 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.93 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.93 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.93 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.93 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.93 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.93 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.93 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.93 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.93 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.93 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.93 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.92 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.92 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.92 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.92 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.92 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.92 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.92 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.92 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.91 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.91 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.91 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.91 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.91 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.91 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.91 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.91 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.91 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.91 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.91 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.91 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.91 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.91 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.91 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.9 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.9 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.9 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.9 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.9 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.9 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.9 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.9 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.9 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.9 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.89 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.89 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.89 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.89 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.88 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.81 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.88 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.88 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.88 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.88 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.88 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.88 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.88 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.88 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.87 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.87 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.87 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.87 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.87 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.87 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.87 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.86 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.86 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.86 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.86 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.86 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.86 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.86 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.85 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.85 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.84 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.84 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.83 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.83 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.83 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.83 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.83 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.82 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.82 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.82 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.82 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.81 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.81 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.81 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.81 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.8 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.8 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.8 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.79 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.79 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.79 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.78 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.78 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.77 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.77 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.76 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.76 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.76 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.75 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.72 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.72 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.71 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.67 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.62 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.61 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.37 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.52 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.35 |
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=331.81 Aligned_cols=369 Identities=20% Similarity=0.275 Sum_probs=286.2
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|||+++.+++|+.+.+++.+.+...++||+. .+..+....+.++++++++++++|++++ ++++| +|+++++..++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~-~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEE-SSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEE-CCchHHHHHHH
Confidence 379999999999999999999999888888887 3566777888999999999999999765 79998 78888888888
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++... ..++||+ |+++..+|+++...+.. .|++++.+++++++.+|+++|+++++ +++
T Consensus 78 ~~~~~~-----------~~~~gd~--vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 139 (382)
T 4hvk_A 78 IGYAMR-----------NARKGKH--ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-----DDT 139 (382)
T ss_dssp HHHHHH-----------HGGGCCE--EEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC-----TTE
T ss_pred HHhhhh-----------hcCCCCE--EEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc-----cCc
Confidence 776210 0167885 99999999999877655 59999999999888999999999997 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++||||.+.|+++|.++|++||+ +|+|++|+.+..++++... ++|++++|+||++| |.|+|+++++++
T Consensus 140 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~g-~~g~g~~~~~~~ 214 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI---GADMLTISSNDIYG-PKGVGALWIRKE 214 (382)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH---TCSEEEEESGGGTS-CTTCEEEEEETT
T ss_pred eEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc---CCCEEEEeHHHhcC-CCceEEEEEcCc
Confidence 999999999999999999999999999999 9999999998888777655 78999999999865 777999999987
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
. .+.+...+++. ..++..++++..++.. +++.+. ..+.+.+.++.+++++++.
T Consensus 215 ~----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~l~ 269 (382)
T 4hvk_A 215 A----KLQPVILGGGQ------------------ENGLRSGSENVPSIVGFGKAAEIT---AMEWREEAERLRRLRDRII 269 (382)
T ss_dssp C----CCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred c----CcCcccccCCC------------------cCccccCCcCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHH
Confidence 5 24455444432 3455677877766543 334433 2356788899999999999
Q ss_pred HhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh---H-
Q 043646 393 GRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG---H- 467 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~---~- 467 (625)
+.|.++|+++++.+. ..+.+ ++.|.+. + .+..++.+.|.+ +||.+++|..|..+.. +
T Consensus 270 ~~L~~~~~~~~~~~~-~~~~~~~~~~~~~-~---------------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~ 331 (382)
T 4hvk_A 270 DNVLKIEESYLNGHP-EKRLPNNVNVRFS-Y---------------IEGESIVLSLDM-AGIQASTGSACSSKTLQPSHV 331 (382)
T ss_dssp HHHTTSTTEEECSCS-SSBCTTEEEEEET-T---------------CCHHHHHHHHHH-TTCBCBCC--------CCCHH
T ss_pred HHHhcCCCeEEeCCc-cccCCCEEEEEEC-C---------------CCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHH
Confidence 999999999998764 23333 6666553 2 246788888855 7999999998874321 1
Q ss_pred -hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCc
Q 043646 468 -TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLY 530 (625)
Q Consensus 468 -~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y 530 (625)
..+++++.. .++++||+++.++|++|+++++++|++++.+..++.|++
T Consensus 332 ~~~~g~~~~~---------------~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~ 380 (382)
T 4hvk_A 332 LMACGLKHEE---------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLY 380 (382)
T ss_dssp HHHTTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHcCCChhh---------------cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 111221110 148999999999999999999999999998887766655
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=333.99 Aligned_cols=385 Identities=18% Similarity=0.245 Sum_probs=293.7
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhC--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVL--PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~--~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
+..+|||+++.++.|+.|.+++.+.+. ..+++|+...+..+....+.++++++++++++|++++ +|+|| +|+++++
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggt~a~ 98 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATESD 98 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEe-CChHHHH
Confidence 568999999999999999999999887 7788888744566777788999999999999999766 89998 6777778
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
..++.++... ..++||+ |+++..+|+++...+.. .|++++.++.+.++.+|+++|+++++
T Consensus 99 ~~a~~~l~~~-----------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---- 161 (423)
T 3lvm_A 99 NLAIKGAANF-----------YQKKGKH--IITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR---- 161 (423)
T ss_dssp HHHHHHHHHH-----------HTTTCCE--EEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----
T ss_pred HHHHHHHHHh-----------hccCCCE--EEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC----
Confidence 7777765200 0136775 99999999999877744 49999999999889999999999997
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
+++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||++| |.|+|+++
T Consensus 162 -~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~g-~~g~G~~~ 236 (423)
T 3lvm_A 162 -DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIYG-PKGIGALY 236 (423)
T ss_dssp -TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS---CCSEEEEESTTTTS-CSSCEEEE
T ss_pred -CCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc---CCCEEEechHHhcC-CCCeEEEE
Confidence 57899999999999999999999999999999999999999998887777766 78999999999765 66799999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
++++. ...+.+...+++. ...+..++++...... +++.++. .. .+.+.++.+.++
T Consensus 237 ~~~~~--~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~~--~~-~~~~~~~~~~~~ 293 (423)
T 3lvm_A 237 VRRKP--RVRIEAQMHGGGH------------------ERGMRSGTLPVHQIVGMGEAYRIAK--EE-MATEMERLRGLR 293 (423)
T ss_dssp ECBTT--BCCCCCSSCSSCT------------------TTTTCCSCCCHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHH
T ss_pred Eeccc--cCCCCccccCCcc------------------cccccCCCCCHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHH
Confidence 99887 4455555554433 2334566766665543 3444432 22 678888999999
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch----
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP---- 464 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~---- 464 (625)
+++.+.|.++|+++++.+.......++.|.+ +. .+..++.+.|.+ |.+++|.+|...
T Consensus 294 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~l~~~l~~---i~v~~g~~~~~~~~~~ 354 (423)
T 3lvm_A 294 NRLWNGIKDIEEVYLNGDLEHGAPNILNVSF-NY---------------VEGESLIMALKD---LAVSSGSACTSASLEP 354 (423)
T ss_dssp HHHHHHHTTSTTEEEESCSTTBCTTEEEEEE-TT---------------SCHHHHHHHTTT---EECBCCCC-----CCC
T ss_pred HHHHHHHhcCCCEEEeCCccccCCCeEEEEe-CC---------------CCHHHHHHHHhh---heeccCccccCCCccc
Confidence 9999999999999998765322334666665 22 246678888854 999999888631
Q ss_pred -hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCccc-----cccccc
Q 043646 465 -YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHF-----NVKAGN 538 (625)
Q Consensus 465 -~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~-----~~~~~~ 538 (625)
+....+++.... .++++||+++..++++|+++++++|++++.+..+..|+|.. +.++-+
T Consensus 355 ~~~~~~~g~~~~~---------------~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (423)
T 3lvm_A 355 SYVLRALGLNDEL---------------AHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIE 419 (423)
T ss_dssp CHHHHHHTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSCC--
T ss_pred cHHHHHhCCCccc---------------cCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccCchh
Confidence 111112222111 13899999999999999999999999999998888886644 566668
Q ss_pred ccc
Q 043646 539 WCS 541 (625)
Q Consensus 539 w~~ 541 (625)
|+|
T Consensus 420 ~~~ 422 (423)
T 3lvm_A 420 WAH 422 (423)
T ss_dssp ---
T ss_pred hhc
Confidence 876
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=324.14 Aligned_cols=370 Identities=19% Similarity=0.284 Sum_probs=282.1
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.++.|+.|.+++.+.+...++|+++ .+..+....+...++++++++++|++++ ++++| +|+++++..++.
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~~~ 78 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEANNLAII 78 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEE-SSHHHHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEc-CchHHHHHHHHH
Confidence 79999999999999999999988777778876 3555666778899999999999999765 89998 677888888877
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++... ..++||+ |+++.++|+++...++. .|++++.+++++++.+|+++|+++++ ++++
T Consensus 79 ~l~~~-----------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~ 140 (382)
T 4eb5_A 79 GYAMR-----------NARKGKH--ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-----DDTI 140 (382)
T ss_dssp HHHHH-----------HGGGCCE--EEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC-----TTEE
T ss_pred HHHhh-----------ccCCCCE--EEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc-----CCCe
Confidence 76200 0157775 99999999999877754 59999999998888899999999987 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++++||||.+.|+++|.++|++||++ |+|++++.+..++++..+ +.|++++|+||++| |.|+|+++++++.
T Consensus 141 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~---~~di~~~s~sK~~g-~~g~G~~~~~~~~ 215 (382)
T 4eb5_A 141 LVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI---GADMLTISSNDIYG-PKGVGALWIRKEA 215 (382)
T ss_dssp EEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH---TCSEEEEETGGGTC-CSSCEEEEEETTC
T ss_pred EEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc---CCCEEEeehHHhcC-CCceEEEEEcccc
Confidence 999999999999999999999999999999 999999988776666544 68999999999965 7779999998874
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
.+.+...+++. ..++..++++..+.. .+++.++. .+.+.+.++.+++++++.+
T Consensus 216 ----~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~al~~~~---~~~~~~~~~~~~~~~~l~~ 270 (382)
T 4eb5_A 216 ----KLQPVILGGGQ------------------ENGLRSGSENVPSIVGFGKAAEITA---MEWREEAERLRRLRDRIID 270 (382)
T ss_dssp ----CCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred ----ccCceecCCCc------------------cccccCCCccHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHH
Confidence 13333333221 233456777665543 34455442 2477888899999999999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHhh-
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHTL- 469 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~~- 469 (625)
.|.++|+++++.+.......++.|.+. + .+..++.+.|. ++||.+++|..|.... .+.+
T Consensus 271 ~L~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~~~ 333 (382)
T 4eb5_A 271 NVLKIEESYLNGHPEKRLPNNVNVRFS-Y---------------IEGESIVLSLD-MAGIQASTGSACSSKTLQPSHVLM 333 (382)
T ss_dssp HHTTSTTEEECSCSSSBCTTEEEEEET-T---------------SCHHHHHHHHH-HHTCBCBCCCGGGTSSCCCCHHHH
T ss_pred HHhhCCCeEEeCCcccCCCCEEEEEeC-C---------------cCHHHHHHHHH-HCCEEEeccccccCCCCcccHHHH
Confidence 999998999876642222456666553 2 23668888886 4799999998775310 0000
Q ss_pred -hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCcc
Q 043646 470 -LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYH 531 (625)
Q Consensus 470 -l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~ 531 (625)
++.++. . .++++||+++.+++++|+++++++|++++.+..++.+.|.
T Consensus 334 ~~g~~~~--~-------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4eb5_A 334 ACGLKHE--E-------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp HTTCCHH--H-------------HTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred HcCCChh--c-------------cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 111100 0 1489999999999999999999999999988777666663
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=321.39 Aligned_cols=393 Identities=23% Similarity=0.346 Sum_probs=298.7
Q ss_pred HHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh
Q 043646 55 LAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL 134 (625)
Q Consensus 55 ~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~ 134 (625)
+..+|++|+...... .| +..+|||+++.++.|+.+.+++.+.+.....|++...+..++.......++++++++++
T Consensus 5 ~~~~r~~f~~~~~~~---~g-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 80 (406)
T 1kmj_A 5 VDKVRADFPVLSREV---NG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI 80 (406)
T ss_dssp HHHHHHTCGGGGCEE---TT-EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCccccccc---CC-CceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 467899887542111 12 35899999999999999999999988776678876444455566778899999999999
Q ss_pred CC-CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEe
Q 043646 135 GG-GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIG 209 (625)
Q Consensus 135 g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~ 209 (625)
|. +++ +|+|| +|+++++..++.++... .+++||+ |+++.++|+++...+ +..|++++.++
T Consensus 81 ~~~~~~-~v~~~-~g~t~a~~~~~~~~~~~-----------~~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 145 (406)
T 1kmj_A 81 NARSAE-ELVFV-RGTTEGINLVANSWGNS-----------NVRAGDN--IIISQMEHHANIVPWQMLCARVGAELRVIP 145 (406)
T ss_dssp TCSCGG-GEEEE-SSHHHHHHHHHHHTHHH-----------HCCTTCE--EEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCC-eEEEe-CChhHHHHHHHHHhhhh-----------cCCCCCE--EEEecccchHHHHHHHHHHHhCCCEEEEEe
Confidence 98 444 89998 67888888888776200 0367875 999999999876553 45699999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
.+.++.+|+++|+++++ +++++|++++++|+||.+.|+++|.++|++||+++|+|++++.+..++++... +.
T Consensus 146 ~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~---~~ 217 (406)
T 1kmj_A 146 LNPDGTLQLETLPTLFD-----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DC 217 (406)
T ss_dssp BCTTSCBCGGGHHHHCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TC
T ss_pred cCCCCCcCHHHHHHHhc-----cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc---CC
Confidence 98888899999999987 57999999999999999999999999999999999999999988776665544 68
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal 367 (625)
|+++.|+||++| |.|+|++++++++ .+.+.+...||+....... .....+.....+++.|++++.+.+. +++
T Consensus 218 d~~~~s~~K~~g-~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 291 (406)
T 1kmj_A 218 DFYVFSGHKLYG-PTGIGILYVKEAL--LQEMPPWEGGGSMIATVSL---SEGTTWTKAPWRFEAGTPNTGGIIGLGAAL 291 (406)
T ss_dssp SEEEEEGGGTTS-CTTCEEEEECHHH--HHHCCCSSCSTTSEEEEET---TTEEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred CEEEEEchhccC-CCCcEEEEEeHHH--HhhcCCcccCCCceeeccc---ccccccCCCchhccCCCCCHHHHHHHHHHH
Confidence 999999999995 6669999999887 3445566666654332210 0001112224567778888777653 344
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+++ +..+.+.+.++.+.+++++.+.|.++|+++++.+. .+++++.|.+ ++ ++..++.+.|
T Consensus 292 ~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~~~~-~~---------------~~~~~~~~~l 351 (406)
T 1kmj_A 292 EYV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNL-GK---------------HHAYDVGSFL 351 (406)
T ss_dssp HHH--HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--TCCSEEEEEE-TT---------------CCHHHHHHHH
T ss_pred HHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CcCCEEEEEE-CC---------------CCHHHHHHHH
Confidence 444 33478889999999999999999999999988763 2467777754 32 2356788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. ++||.+++|..|..+... ..+ .++++||+++.++|++|+++++++|+++++.
T Consensus 352 ~-~~gi~v~~g~~~~~~~~~-~~g--------------------~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 352 D-NYGIAVRTGHHCAMPLMA-YYN--------------------VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp H-HTTEECEEECTTCHHHHH-HTT--------------------CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred h-hCCcEEEeccccchHHHH-hcC--------------------CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 5 479999999988743211 111 1489999999999999999999999998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=324.77 Aligned_cols=370 Identities=16% Similarity=0.183 Sum_probs=284.9
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
.++.+|++|+... +..+|||+++.++.|+.|.+++.+.+...+.|++. .+..+.......++++++++++
T Consensus 12 ~~~~~r~~fp~~~---------~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~ 81 (406)
T 3cai_A 12 DVARVRGLHPSLG---------DGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADL 81 (406)
T ss_dssp CHHHHHHTCTTTT---------SSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhhhcC---------CCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHH
Confidence 4567899997761 34899999999999999999999988766667653 3445556678889999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEe
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIG 209 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~ 209 (625)
+|++++ +|+|| +|+++++..++.++.. .+++||+ |+++..+|+++...+.. .|++++.++
T Consensus 82 ~g~~~~-~v~~~-~g~t~al~~~~~~l~~------------~~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~ 145 (406)
T 3cai_A 82 VNADPG-GVVLG-ADRAVLLSLLAEASSS------------RAGLGYE--VIVSRLDDEANIAPWLRAAHRYGAKVKWAE 145 (406)
T ss_dssp HTCCGG-GEEEE-SCHHHHHHHHHHHTGG------------GGBTTCE--EEEETTSCGGGTHHHHHHHHHHBCEEEEEC
T ss_pred hCCCCC-eEEEe-CChHHHHHHHHHHHhh------------ccCCCCE--EEEcCCccHHHHHHHHHHHHhcCCeEEEEe
Confidence 999765 89998 7888889988876510 1467875 99999999998777765 699999999
Q ss_pred cC-CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCC
Q 043646 210 LD-DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDG 288 (625)
Q Consensus 210 ~~-~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~ 288 (625)
++ .++.+|+++|+++++ +++++|++++++|+||.+.|+++|.++|+++|+++|+|++++.|..++++..+ +
T Consensus 146 ~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~ 217 (406)
T 3cai_A 146 VDIETGELPTWQWESLIS-----KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET---D 217 (406)
T ss_dssp CCTTTCCCCGGGHHHHCC-----TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH---C
T ss_pred cCcccCCcCHHHHHHHhC-----CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc---C
Confidence 98 678899999999987 57999999999999999999999999999999999999999988877776655 7
Q ss_pred CcEEEEcCCCCCCCCCCce-EEEEeccccccCCCCCcc--cCCceEEeeccccccccccccchhhhhcCCChhHHHHH--
Q 043646 289 YDAIFLATHKFLGGPGTPG-ILLISKALYQLGSSPPST--CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-- 363 (625)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G-~l~v~~~~~~l~~~~p~~--~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-- 363 (625)
+|++++|+||++| |. +| ++++++++ .+.+.+.. +|++ ...++..||++..+..
T Consensus 218 ~d~~~~s~~K~~g-~~-~G~~~~~~~~~--~~~l~~~~~~~~~~------------------~~~~~~~~t~~~~~~~a~ 275 (406)
T 3cai_A 218 ADVVTVNAHAWGG-PP-IGAMVFRDPSV--MNSFGSVSTNPYAT------------------GPARLEIGVHQFGLLAGV 275 (406)
T ss_dssp CSEEEEEGGGGTS-CS-CEEEEESCHHH--HHTSCCCCSCTTCC------------------GGGGGCCSCCCHHHHHHH
T ss_pred CCEEEeehhhhcC-CC-cCeEEEEehHH--HhhcCCcccCCCCC------------------ccccccCCCccHHHHHHH
Confidence 8999999999986 66 78 99998887 33444432 1111 1345667888777653
Q ss_pred HHHHHHHHHhhcC--------------HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcc
Q 043646 364 RAALAFWVKEYIG--------------YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPEN 429 (625)
Q Consensus 364 ~aal~~~~~~~~g--------------~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~ 429 (625)
.++++++ +..| .+.+.++.+.+++++.+.|+++++++++.+. ..+.+++.|.+..
T Consensus 276 ~~al~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~-------- 344 (406)
T 3cai_A 276 VASIEYL--AALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRP-EAQIPVVSFAVHK-------- 344 (406)
T ss_dssp HHHHHHH--HTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCC-SSBCSEEEEEETT--------
T ss_pred HHHHHHH--HHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCc-cccCCEEEEEECC--------
Confidence 3455554 3334 6788889999999999999999999988764 3356676665531
Q ss_pred ccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 430 ~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
.+..++.+.|.+ +||.+++|+.. + ....++.. . ..+++||+++.+++++|+
T Consensus 345 --------~~~~~~~~~L~~-~gi~v~~g~~~--~-~~~~~g~~----------------~-~~~~iRis~~~~~t~e~i 395 (406)
T 3cai_A 345 --------VPADRVVQRLAD-NGILAIANTGS--R-VLDVLGVN----------------D-VGGAVTVGLAHYSTMAEV 395 (406)
T ss_dssp --------BCHHHHHHHHHH-TTEECEECCSC--H-HHHHHTTT----------------T-TTCCEEEECCTTCCHHHH
T ss_pred --------cCHHHHHHHHHH-CCcEEecCChH--H-HHHHcCCC----------------C-CCCeEEEEeecCCCHHHH
Confidence 236678888855 79999987611 1 11011110 0 147899999999999999
Q ss_pred HHHHHHHHHH
Q 043646 510 EFILAALEFI 519 (625)
Q Consensus 510 d~ll~aL~~~ 519 (625)
++++++|+++
T Consensus 396 ~~~~~~l~~~ 405 (406)
T 3cai_A 396 DQLVRALASL 405 (406)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHh
Confidence 9999999753
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=316.71 Aligned_cols=398 Identities=23% Similarity=0.324 Sum_probs=298.3
Q ss_pred HHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 043646 52 EEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131 (625)
Q Consensus 52 ~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia 131 (625)
+..+..+|++|+.....+ .| +..+|||++..++.|+.|.+++.+.+.....|++...+.++........+++++++
T Consensus 7 ~~~~~~~r~~f~~~~~~~---~g-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la 82 (420)
T 1t3i_A 7 PSLAATVRQDFPILNQEI---NG-HPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82 (420)
T ss_dssp CCHHHHHGGGCGGGSCEE---TT-EECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCcccccc---CC-CceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 456788999997652111 12 35899999999999999999999988766667775434455445677889999999
Q ss_pred HHhCC-CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH----HHHHcCCeEE
Q 043646 132 RCLGG-GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL----SWRQSLAEVV 206 (625)
Q Consensus 132 ~~~g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~----~~~~~G~~vv 206 (625)
+++|. +++ ++++| +|+++++..++.+++.. .+++||+ |+++.++|++... ..+..|++++
T Consensus 83 ~~~~~~~~~-~v~~~-~g~t~a~~~~~~~~~~~-----------~~~~gd~--Vl~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (420)
T 1t3i_A 83 KFINARSPR-EIVYT-RNATEAINLVAYSWGMN-----------NLKAGDE--IITTVMEHHSNLVPWQMVAAKTGAVLK 147 (420)
T ss_dssp HHTTCSCGG-GEEEE-SSHHHHHHHHHHHTHHH-----------HCCTTCE--EEEETTCCGGGTHHHHHHHHHHCCEEE
T ss_pred HHcCCCCCC-eEEEc-CChHHHHHHHHHHhhhc-----------ccCCCCE--EEECcchhHHHHHHHHHHHHhcCcEEE
Confidence 99998 444 89998 67788888888776200 0367875 9999999999643 3345799999
Q ss_pred EEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCC
Q 043646 207 EIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNI 286 (625)
Q Consensus 207 ~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~ 286 (625)
.++++.++.+|+++|+++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+
T Consensus 148 ~v~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~-- 220 (420)
T 1t3i_A 148 FVQLDEQESFDLEHFKTLLS-----EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI-- 220 (420)
T ss_dssp EECBCTTSSBCHHHHHHHCC-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH--
T ss_pred EeccCCCCCcCHHHHHHhhC-----CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc--
Confidence 99998888899999999997 57999999999999999999999999999999999999999988776666555
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHH-
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA- 365 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~a- 365 (625)
+.|++++|+||.+| |.|+|++++++++ .+.+.+...+|+....... ....+.....++..|++++.+.+..
T Consensus 221 -~~di~~~s~sK~~~-~~g~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 292 (420)
T 1t3i_A 221 -DCDWLVASGHKMCA-PTGIGFLYGKEEI--LEAMPPFFGGGEMIAEVFF----DHFTTGELPHKFEAGTPAIAEAIALG 292 (420)
T ss_dssp -TCSEEEEEGGGTTS-CTTCEEEEECHHH--HHHSCCCSCSTTSEEEECS----SCEEECCTTGGGCCSSCCHHHHHHHH
T ss_pred -CCCEEEEehhhhcC-CCceEEEEEchHH--HhhcCceecCCCccccccc----cccCCCCchhhccCCCccHHHHHHHH
Confidence 68999999999765 6668999999887 3345555555554332211 0111223345667788887776543
Q ss_pred -HHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 366 -ALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV--KRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 366 -al~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~--~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+++++ +..+.+.+.++.+.+++++.+.|.++++++++.+... .+++++.|.+ ++ .+..+
T Consensus 293 ~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~ 354 (420)
T 1t3i_A 293 AAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNV-AG---------------LHASD 354 (420)
T ss_dssp HHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEE-TT---------------BCHHH
T ss_pred HHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEE-CC---------------CCHHH
Confidence 45554 3457888899999999999999999989998876311 2467777764 22 13567
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+.|. ++||.+++|..|..+.... ++ .++++||+++.+++++|+++++++|+++++.
T Consensus 355 ~~~~l~-~~gi~v~~~~~~~~~~~~~-~g--------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 355 VATMVD-QDGIAIRSGHHCTQPLHRL-FD--------------------ASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHHHH-TTTEECBCSCTTCHHHHHH-TT--------------------CCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HCCeEEeeccccchHHHHh-cC--------------------CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 888885 4799999998886432111 11 1488999999999999999999999998876
Q ss_pred h
Q 043646 523 G 523 (625)
Q Consensus 523 ~ 523 (625)
.
T Consensus 413 ~ 413 (420)
T 1t3i_A 413 F 413 (420)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=331.39 Aligned_cols=370 Identities=16% Similarity=0.140 Sum_probs=277.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhh-HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVG-QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~-~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
++.+|||+++.++.|+.+.+++.+.+.. +.+.....+..+ ..+..+.+++++++++++|++++ +|+|| +|++++++
T Consensus 66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~t~al~ 142 (465)
T 3e9k_A 66 ENAIYFLGNSLGLQPKMVKTYLEEELDK-WAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK-EIALM-NALTVNLH 142 (465)
T ss_dssp CBCEECBTTTSCCEETTHHHHHHHHHHH-HHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG-GEEEC-SCHHHHHH
T ss_pred CCeEEecCCccCCChHHHHHHHHHHHHH-HHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC-CEEEE-CCHHHHHH
Confidence 4789999999999999998888776632 222111111100 11234567789999999999876 89998 78999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHH----HcCCeE-----EEEecCCCCCCCHHHHHHH
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWR----QSLAEV-----VEIGLDDNGLLDIEALRSQ 224 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~----~~G~~v-----v~v~~~~~~~ld~~~L~~~ 224 (625)
.++.++. ++++ +..|+++..+|+++..+|. ..|+++ ..++.+.++.+|+++|+++
T Consensus 143 ~~~~~~~---------------~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~ 207 (465)
T 3e9k_A 143 LLMLSFF---------------KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEV 207 (465)
T ss_dssp HHHHHHC---------------CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHH
T ss_pred HHHHHhc---------------cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHH
Confidence 9988872 3332 2359999999999776543 468764 3446666788999999999
Q ss_pred HHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCC-CCC
Q 043646 225 LELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFL-GGP 303 (625)
Q Consensus 225 l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~l-ggp 303 (625)
|+++ .+++++|++++++|+||.+.|+++|.++||+||+++++|+||+.|..++++..+ ++|++++|+||++ +||
T Consensus 208 i~~~--~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~---~~D~~~~s~~K~l~~gp 282 (465)
T 3e9k_A 208 IEKE--GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDW---GVDFACWCSYKYLNAGA 282 (465)
T ss_dssp HHHH--GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCCEEEECSSSTTCCCT
T ss_pred HHhc--CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhc---CCCEEEECcccccccCC
Confidence 9742 147899999999999999999999999999999999999999999999988877 8999999999999 579
Q ss_pred CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHH
Q 043646 304 GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIK 381 (625)
Q Consensus 304 ~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~ 381 (625)
.|+|++++++++ ...+.+...||........|.......+.....+++.||+++.+++. ++++++ +..|++.+.
T Consensus 283 ~~~g~l~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~--~~~~~~~~~ 358 (465)
T 3e9k_A 283 GGIAGAFIHEKH--AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIF--KQATMKALR 358 (465)
T ss_dssp TCCCEEEECGGG--TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH--HHHCHHHHH
T ss_pred CceEEEEEcHHH--HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHH--HHcCHHHHH
Confidence 889999999988 45566665554321111111111112223346788899999888764 445554 556899999
Q ss_pred HHHHHHHHHHHHhhCCC----------CcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh
Q 043646 382 KQEDVYIESALGRILPN----------QNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL 450 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l----------~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~ 450 (625)
++...+++++.+.|.++ ++++++.+.+ ..++++++|.+.. +..++.+.|.+
T Consensus 359 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-----------------~~~~l~~~L~~- 420 (465)
T 3e9k_A 359 KKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-----------------PNKDVFQELEK- 420 (465)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-----------------TTCCHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-----------------CHHHHHHHHHH-
Confidence 99999999999999875 7999998753 3457888886641 13468888865
Q ss_pred cCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 451 FGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 451 ~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.||.++.+ .++++|||+ ++++|++|+++++++|++++++.
T Consensus 421 ~Gi~v~~~---------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 421 RGVVCDKR---------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp TTEECEEE---------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred CCEEEecC---------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 69998721 248999999 89999999999999999988654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=304.36 Aligned_cols=364 Identities=20% Similarity=0.297 Sum_probs=268.0
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
+|||+++.++.|+.|.+++.+.+...+++++. .+..++.......++++++++++|++++ ++++| +|+++++..++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEE-CCHHHHHHHHHH
Confidence 79999999999999999999988776777765 3456667788889999999999998766 89998 778888888887
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++... .+++||+ |+++.++|+++...+ +..|++++.++.+.++.+|+++|+++++ ++++
T Consensus 80 ~~~~~-----------~~~~gd~--vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~ 141 (384)
T 1eg5_A 80 TVAET-----------FEKRKRT--IITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-----EDTF 141 (384)
T ss_dssp HHHHH-----------TTTTCCE--EEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-----TTEE
T ss_pred hhhhh-----------ccCCCCE--EEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC-----CCCe
Confidence 76200 0157875 999999999987666 5679999999998888899999999987 5799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcC--CEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYG--GFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g--~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+|++++++||||.+.|+++|.++|++|| +++|+|++++.+..++++..+ +.|++++|+||++| |.|+|++++++
T Consensus 142 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~g-~~G~G~~~~~~ 217 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFHG-PKGVGITYIRK 217 (384)
T ss_dssp EEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGTS-CTTCEEEEECT
T ss_pred EEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhc---CCCEEEecHHHhcC-CCceEEEEEcC
Confidence 9999999999999999999999999999 999999999987776666554 68999999999976 65689999988
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++ .+.+...+++. ..++..++++..... .++++.+ ..+.+.+.++.+++++++
T Consensus 218 ~~----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l 272 (384)
T 1eg5_A 218 GV----PIRPLIHGGGQ------------------ERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKL 272 (384)
T ss_dssp TS----CCCCSBCSSCT------------------TTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHH
T ss_pred CC----ccccccccCcc------------------cccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHH
Confidence 75 12222222211 122334565555443 2334432 235778888999999999
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHh
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHT 468 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~ 468 (625)
.+.|.+ +++++..+.......++.|.+. + ++..++.+.|. ++||.+++|..|.... .+.
T Consensus 273 ~~~L~~-~g~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~~~~~ 334 (384)
T 1eg5_A 273 VSGLMN-LGAHIITPLEISLPNTLSVSFP-N---------------IRGSTLQNLLS-GYGIYVSTSSACTSKDERLRHV 334 (384)
T ss_dssp HHHHHT-TTCEECSCTTSBCTTEEEEECT-T---------------CCHHHHHHHHH-HTTEECBC------------CH
T ss_pred HHHhCC-CCeEEeCCcccCCCCEEEEEeC-C---------------CCHHHHHHHHh-hCCeEEeccccccCCCCcchHH
Confidence 999988 6888876532112345555442 2 23667888885 5899999998775210 000
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+..++.+... .++++||+++.+++++|+++++++|++++.+.
T Consensus 335 ~~~~g~~~~~-------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 335 LDAMGVDRRI-------------AQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp HHHTTCCHHH-------------HHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCChhh-------------cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0001100000 13899999999999999999999999988764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=317.03 Aligned_cols=355 Identities=12% Similarity=0.058 Sum_probs=264.6
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD--SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~--~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
++--||.+++++.|+.|++++.+.+..+++|+.+.. ++.+..+.+.++++|+.+++++|++++++|+|+.+|+|++++
T Consensus 12 ~~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n 91 (377)
T 3e77_A 12 DLGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFS 91 (377)
T ss_dssp ---CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred CcccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHH
Confidence 456789999999999999999999988888876531 446778899999999999999999764589995467888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++..+.. -.+||+ |++...+|.+.... ++..|+.++.++.+.++.+++++++.+++ +
T Consensus 92 ~a~~~l~~-------------~~~Gd~--v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~-----~ 151 (377)
T 3e77_A 92 AVPLNLIG-------------LKAGRC--ADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN-----P 151 (377)
T ss_dssp HHHHHHGG-------------GSTTCE--EEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC-----T
T ss_pred HHHHhccC-------------CCCCCe--EEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC-----C
Confidence 88877620 123776 77777777775311 23358888878877666667776665555 6
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
++++|++++.+|.||++.|+ +|+++|+++++|++|++|..++|++++ |++++|+|||+| |.|+|+++++
T Consensus 152 ~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~-----~~~~~s~~K~~g-p~G~g~l~~~ 220 (377)
T 3e77_A 152 DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKF-----GVIFAGAQKNVG-SAGVTVVIVR 220 (377)
T ss_dssp TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGC-----SEEEEEGGGTTS-CTTCEEEEEE
T ss_pred CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhc-----CEEEEecccccC-CCccEEEEEc
Confidence 89999999999999999998 477899999999999999999999876 468999999995 9999999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhc-CHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYI-GYEVIKKQEDVYIE 389 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~-g~~~i~~~~~~l~~ 389 (625)
+++ +..+.|..+. .. .+....+.....|||++.+++. ++++++ ... |++.+.+|++.+++
T Consensus 221 ~~~--l~~~~~~~p~--~~-----------~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i~~~~~~l~~ 283 (377)
T 3e77_A 221 DDL--LGFALRECPS--VL-----------EYKVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAMEKLSSIKSQ 283 (377)
T ss_dssp TTS--CSCCCTTSCG--GG-----------CHHHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHH
T ss_pred HHH--HhhccCCCCc--hh-----------hHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHH
Confidence 998 5555543321 10 0011112334578999988764 556665 456 79999999999999
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
++++.|.++|++.+.......|++ +++|.+.... .+ ..++ ..+.+.|. ++||.+++|..+
T Consensus 284 ~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~-~~---------~~~~-~~~l~~l~-~~Gi~~~~g~~~------- 344 (377)
T 3e77_A 284 TIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAK-GD---------DALE-KRFLDKAL-ELNMLSLKGHRS------- 344 (377)
T ss_dssp HHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTT-CC---------HHHH-HHHHHHHH-HTTEESCBCCTT-------
T ss_pred HHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCC-Cc---------hhHH-HHHHHHHH-HCCcEEeCCCCc-------
Confidence 999999999998864432245666 5888874311 00 0011 23555553 479998876522
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+.+|+|+++++|++|||+++++|++++++
T Consensus 345 ------------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 345 ------------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 266999999999999999999999998765
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=316.98 Aligned_cols=372 Identities=18% Similarity=0.195 Sum_probs=260.7
Q ss_pred CCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 71 YSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 71 ~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
.++..+..+|||+++.++.|+.+.+++.+.+...++|++. .+..+....+..+++++++++++|++++ +|++| +|++
T Consensus 14 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~g~t 90 (400)
T 3vax_A 14 LVPRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFT-SGAT 90 (400)
T ss_dssp --------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEE-SCHH
T ss_pred CCcccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEe-CCHH
Confidence 3444467899999999999999999999988766778776 3555666778899999999999999866 89998 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCC-ceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEE-RWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLE 226 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~ 226 (625)
+++..++.++... ..++|| + |+++..+|+++...++. .|++++.++++.++.+|+++|+++++
T Consensus 91 ~al~~~~~~l~~~-----------~~~~gd~~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 91 ESNNIALLGLAPY-----------GERTGRRH--IITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR 157 (400)
T ss_dssp HHHHHHHHTTHHH-----------HHHHTCCE--EEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC
T ss_pred HHHHHHHHHHHHh-----------hccCCCCE--EEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC
Confidence 8888887765100 015677 6 99999999998877665 59999999999889999999999987
Q ss_pred HhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCc
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTP 306 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (625)
+++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ +|++++|+||++| |.|+
T Consensus 158 -----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~----~d~~~~s~~K~~g-~~g~ 227 (400)
T 3vax_A 158 -----PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP----IDMISISGHKIGA-PKGV 227 (400)
T ss_dssp -----TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC----CSEEEEETGGGTS-CSSC
T ss_pred -----CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc----CcEEEEeHHHhCC-CCce
Confidence 57999999999999999999999999999999999999999998887776542 7999999999655 7789
Q ss_pred eEEE-Eeccccc--cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHH
Q 043646 307 GILL-ISKALYQ--LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIK 381 (625)
Q Consensus 307 G~l~-v~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~ 381 (625)
|+++ ++++... -..+.+...++.. ..++..++++..+... +++..+ ..+.+.+.
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~ 286 (400)
T 3vax_A 228 GALVTRRREEMDDERVPLEPIMFGGGQ------------------ERKLRPGTLPVPLIMGLAEAAKIF---EAEHAQWQ 286 (400)
T ss_dssp EEEEECBCSSSTTCBCCCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH---HHSHHHHH
T ss_pred EEEEEecchhccccccccCceecCCCc------------------eeeeecCCCCHHHHHHHHHHHHHH---HhhHHHHH
Confidence 9999 8873210 0123444433322 3445677777766543 344443 23678899
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+++++++.+.|. .+++++..+.......++.|.+. + .+..++.+.|. +||.+++|..|
T Consensus 287 ~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~l~~~L~--~gi~v~~g~~~ 347 (400)
T 3vax_A 287 VAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFE-D---------------VDAEAFLVTLK--DLVAVATGSAS 347 (400)
T ss_dssp HHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECT-T---------------CCHHHHHHHHH--HHHHHTTTTEE
T ss_pred HHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeC-C---------------CCHHHHHHHHh--cCcEEEecccc
Confidence 999999999999999 88999987653222345666443 2 24678888885 79999999887
Q ss_pred Cch---hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHH
Q 043646 462 AGP---YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 462 ~~~---~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~ 521 (625)
... ..+.+..++..... .++++||++ +.+++++|+++++++|+++++
T Consensus 348 ~~~~~~~~~~~~~~g~~~~~-------------~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 348 TSASFTPSHVLRAMGLPEEA-------------ASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EEEEECCHHHHHTTTCCHHH-------------HTSEEEEEEEEC-------------------
T ss_pred cCCCCCccHHHHHcCCCccc-------------cCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 632 01111111111100 148999999 999999999999999998764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=305.77 Aligned_cols=372 Identities=17% Similarity=0.108 Sum_probs=275.6
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKR 132 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~ 132 (625)
.++.+|++|+.. ++.+|||+++.++.|+.|.+++.+.+.... .++.+ +...........++++.+++
T Consensus 3 ~~~~~r~~f~~~----------~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~la~ 70 (390)
T 1elu_A 3 MITPSLHQFPGL----------ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS--IAANQHIQQLIAQLRQALAE 70 (390)
T ss_dssp -------CCGGG----------TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCC----------CCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHH
Confidence 356778888643 457999999999999999999988774321 12221 11112234678899999999
Q ss_pred HhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEE
Q 043646 133 CLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEI 208 (625)
Q Consensus 133 ~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v 208 (625)
++|++++ +|++| +|+++++..++.++. +++||+ |+++.++|+++...+ +..|++++.+
T Consensus 71 ~~g~~~~-~v~~~-~g~t~a~~~~~~~~~--------------~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~v 132 (390)
T 1elu_A 71 TFNVDPN-TITIT-DNVTTGCDIVLWGLD--------------WHQGDE--ILLTDCEHPGIIAIVQAIAARFGITYRFF 132 (390)
T ss_dssp HTTSCGG-GEEEE-SSHHHHHHHHHHHSC--------------CCTTCE--EEEETTCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HcCCCHH-HEEEe-CChHHHHHHHHhCCC--------------CCCCCE--EEEecCcccHHHHHHHHHHHHhCcEEEEE
Confidence 9998766 89998 678888888888762 367875 999999999987654 4569999999
Q ss_pred ecC--CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHH----HcCCEEEEeccCcCCCccccCC
Q 043646 209 GLD--DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLH----QYGGFACFDFAASGPYVKINLR 282 (625)
Q Consensus 209 ~~~--~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~----~~g~~vivD~A~~~g~~~id~~ 282 (625)
+.+ .++.+|+++|+++++ +++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.|..++++.
T Consensus 133 ~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~ 207 (390)
T 1elu_A 133 PVAATLNQGDAAAVLANHLG-----PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFS 207 (390)
T ss_dssp CCGGGSSSSCHHHHHHTTCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTT
T ss_pred cCCCCCCccchHHHHHHhcC-----CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChh
Confidence 987 567899999999887 57999999999999999999999999999 9999999999999888777765
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM 362 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 362 (625)
.. +.|+++.|+|||+++|.|+|++++++++ .+.+.+...|++.+..... . ....+.+...++..++++....
T Consensus 208 ~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~~~~g~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 279 (390)
T 1elu_A 208 RL---EVDYYAFTGHKWFAGPAGVGGLYIHGDC--LGEINPTYVGWRSITYGAK--G-EPTGWAEGGKRFEVATSAYPQY 279 (390)
T ss_dssp TS---CCSEEEEESSSTTCCCTTCEEEEECTTT--GGGCCCCSCCTTTEEECTT--S-CEEEECSGGGGGCCSCCCHHHH
T ss_pred hc---CCCEEEccccccccCCCceEEEEECHHh--HhhcCCccccCCccccccc--C-cccccccchHhhCCCCCCHHHH
Confidence 54 7899999999988778889999999887 4456666666654332110 0 0001112234566778776654
Q ss_pred H--HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 363 I--RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 363 ~--~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
. .++++.+ ...+ .+.+.++.+.+++++.+.|.++++++++.+. ...++++.|.+.. +.+
T Consensus 280 ~a~~~al~~l--~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~~---------------~~~ 341 (390)
T 1elu_A 280 AGLLAALQLH--QRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-APQAGLVSFTVDS---------------PLG 341 (390)
T ss_dssp HHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-CCSSSEEEEEECS---------------SSC
T ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-cccccEEEEEcCC---------------CCC
Confidence 3 3445544 3334 8888999999999999999988899988652 2356777775422 134
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|. ++||.+++|. .++++||+++++++++|+++++++|+++
T Consensus 342 ~~~~~~~l~-~~gi~v~~~~--------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 342 HRAIVQKLE-EQRIYLRTIA--------------------------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp HHHHHHHHH-HTTEECEEET--------------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH-HCCEEEEecC--------------------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 668888885 5799998764 1378999999999999999999998753
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.59 Aligned_cols=346 Identities=13% Similarity=0.095 Sum_probs=241.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTS--DSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~--~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
.+|||+++.++.|+.|++++.+.+..+++|+.+. .++.+..+.+.++++|+.+++++|++++++|+|+.+|+|++++.
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 3799999999999999999999888877877652 23356677889999999999999996544799932566777888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HHHHcCCeEEEEecC--CCCC-CCHHHHHHHHHHhhh
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SWRQSLAEVVEIGLD--DNGL-LDIEALRSQLELYKA 230 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~--~~~~-ld~~~L~~~l~~~~~ 230 (625)
++..+ +++||+ |++...+|.+... ..+..| +|+.++.+ ..|. +++++++.+++
T Consensus 107 ai~~l---------------~~~gd~--v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---- 164 (386)
T 3qm2_A 107 VPLNL---------------LGDKTT--ADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---- 164 (386)
T ss_dssp HHHHH---------------CTTCCE--EEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC----
T ss_pred HHHhc---------------cCCCCe--EEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC----
Confidence 87765 567886 4444444555421 123458 89999988 5664 77888877776
Q ss_pred CCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 231 AKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
++|++|++++.+|.||++ .|+++|+ +|+++++|++|++|..++|++++ |++++|+|||+| |.|+|++
T Consensus 165 -~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~-----~~~~~s~hK~lG-P~G~g~l 232 (386)
T 3qm2_A 165 -DNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY-----GVIYAGAQKNIG-PAGLTLV 232 (386)
T ss_dssp -TTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC-----SEEEEETTTTTC-CTTEEEE
T ss_pred -CCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc-----CEEEEecccccC-CCccEEE
Confidence 689999999999999996 8999986 79999999999999999999876 578899999995 9999999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~ 386 (625)
++++++ ++.+.|.... .+ .|....+.....|||++.+++ .++++++ ... |++.+.+|.+.
T Consensus 233 ~v~~~~--~~~~~~~~p~--~~-----------~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~--~~~gG~~~i~~~~~~ 295 (386)
T 3qm2_A 233 IVREDL--LGKAHESCPS--IL-----------DYTVLNDNDSMFNTPPTFAWYLSGLVFKWL--KAQGGVAAMHKINQQ 295 (386)
T ss_dssp EEEGGG--CSCCCTTSCG--GG-----------CHHHHHHC-------CCSHHHHHHHHHHHH--HHHTHHHHHHHHHHH
T ss_pred EECHHH--HhhhcccCCc--HH-----------HHHHHhhcCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHH
Confidence 999998 5555543211 00 011111334456898877765 4556665 455 79999999999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++++.|.+++.+....+ ...++ .+++|.+... +++ ..+...| +++||.++.|..|.
T Consensus 296 l~~~l~~~l~~~~~~~~~~~-~~~rs~~iv~f~~~~~--------------~~~-~~~~~~L-~~~gI~~~~g~~~~--- 355 (386)
T 3qm2_A 296 KAELLYGVIDNSDFYRNDVA-QANRSRMNVPFQLADN--------------TLD-KVFLEES-FAAGLHALKGHRVV--- 355 (386)
T ss_dssp HHHHHHHHHHTCSSEECCBC-GGGBCSSEEEEEESSG--------------GGH-HHHHHHH-HHTTEECCBCCTTT---
T ss_pred HHHHHHHHHHHCCCcccCCC-HHHcCceEEEEECCCc--------------ccc-HHHHHHH-HHCCCEEeCCCCCc---
Confidence 99999999998832233222 23355 4788887531 123 4566666 56799998876552
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+|+|++.++|++|||+++++|+++.++
T Consensus 356 ----------------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 356 ----------------------------GGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ----------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999998765
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=304.40 Aligned_cols=368 Identities=13% Similarity=0.103 Sum_probs=272.6
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
....+|++|+.. ...+|||+.+.++.++.+.+++.+.+.. + ++....+..++++++++++
T Consensus 6 ~~~~~r~~f~~~----------~~~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~ 65 (386)
T 2dr1_A 6 FEEAFKEVYEMV----------KPKYKLFTAGPVACFPEVLEIMKVQMFS-----H-----RSKEYRKVHMDTVERLREF 65 (386)
T ss_dssp CHHHHHHHHHHH----------SCCSEECCSSSCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhc----------CccceeecCCCcCCcHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHH
Confidence 345678888533 2357999999999999999988665421 1 2233577889999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--hHHHHHHcCCeEEEEecC
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS--NLLSWRQSLAEVVEIGLD 211 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~ 211 (625)
+|.+..+++++| +|+++++..++.++ +++||+ |+++.+.|++ +...++..|++++.++.+
T Consensus 66 ~g~~~~~~v~~~-~g~t~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 127 (386)
T 2dr1_A 66 LEVEKGEVLLVP-SSGTGIMEASIRNG---------------VSKGGK--VLVTIIGAFGKRYKEVVESNGRKAVVLEYE 127 (386)
T ss_dssp HTCSSSEEEEES-SCHHHHHHHHHHHH---------------SCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred hCCCCCcEEEEe-CChHHHHHHHHHHh---------------hcCCCe--EEEEcCCchhHHHHHHHHHhCCceEEEecC
Confidence 999723268888 67888888888776 467885 8999999988 666677789999999998
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcE
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDA 291 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~ 291 (625)
.++.+|+++|++++.+. +++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|+
T Consensus 128 ~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di 201 (386)
T 2dr1_A 128 PGKAVKPEDLDDALRKN---PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKW---GLDV 201 (386)
T ss_dssp TTCCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSE
T ss_pred CCCCCCHHHHHHHHhcC---CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccccccc---CCcE
Confidence 88889999999999631 47899999999999999999999999999999999999999988777666554 7899
Q ss_pred EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh-hhhcCCChhHHHHH--HHHHH
Q 043646 292 IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE-ERENGGTPQIVQMI--RAALA 368 (625)
Q Consensus 292 v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~--~aal~ 368 (625)
+++|+||++++|.|+|++++++++. +.+.+....+.. .+...+..... .+...++++..... .++++
T Consensus 202 ~~~s~sK~~~~~~g~G~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 271 (386)
T 2dr1_A 202 VFSSSQKAFGVPPGLAIGAFSERFL--EIAEKMPERGWY--------FDIPLYVKYLKEKESTPSTPPMPQVFGINVALR 271 (386)
T ss_dssp EEEETTSTTCCCSSCEEEEECHHHH--HHHTTCTTCCST--------TCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHH
T ss_pred EEEeccccccCCCceEEEEECHHHH--HHHhcCCCCceE--------EeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999887899999998873 222221111111 00010111111 23445566654443 34444
Q ss_pred HHHHhhc-CHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWVKEYI-GYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~~~~~-g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+ +.. |.+.+.++.+.+++++.+.|.++ ++++..+.......++.+.+.. +.+..++.+.|
T Consensus 272 ~~--~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l 333 (386)
T 2dr1_A 272 II--EKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPP---------------GIKGDEVYEAM 333 (386)
T ss_dssp HH--HHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCT---------------TCCHHHHHHHH
T ss_pred HH--HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCC---------------CCCHHHHHHHH
Confidence 43 344 68889999999999999999887 7777665321134455554421 13467888888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++ ||.+++|..+. .++++||+++.+++++|+++++++|++++.+.
T Consensus 334 ~~~-gi~v~~~~~~~-----------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 334 RKR-GFELAKGYGSV-----------------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp HHT-TEECEECCGGG-----------------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CeEEecCcccc-----------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 764 99999876321 24899999999999999999999999987653
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=303.34 Aligned_cols=357 Identities=11% Similarity=0.049 Sum_probs=264.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+|||+++.++.|+.|.+++.+.+. + + .+........++++++++++|++++ ++++| +|+++++..
T Consensus 7 ~~~~yl~~~~~~~~~~~v~~a~~~~~~----~-~-----~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~t~a~~~ 74 (392)
T 2z9v_A 7 ADPVITLTAGPVNAYPEVLRGLGRTVL----Y-D-----YDPAFQLLYEKVVDKAQKAMRLSNK-PVILH-GEPVLGLEA 74 (392)
T ss_dssp SCCSEECSSSCCCCCHHHHHHTTSCCC----C-T-----TSHHHHHHHHHHHHHHHHHTTCSSC-CEEES-SCTHHHHHH
T ss_pred CCcceeecCCCcCCCHHHHHHHhcccc----c-c-----ccHHHHHHHHHHHHHHHHHhCCCCC-EEEEe-CCchHHHHH
Confidence 356899999999999999999876553 1 1 1234567788999999999999755 89998 677778888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ +++||+ |+++..+|+++. ...+..|++++.++++.++.+|+++|++++++. ++
T Consensus 75 ~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~ 134 (392)
T 2z9v_A 75 AAASL---------------ISPDDV--VLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH---PE 134 (392)
T ss_dssp HHHHH---------------CCTTCC--EEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC---TT
T ss_pred HHHHh---------------cCCCCE--EEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC---CC
Confidence 88776 468886 888889998863 223446999999999888889999999999631 47
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++
T Consensus 135 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~G~l~~~~ 211 (392)
T 2z9v_A 135 ITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC---KADIYVTGPNKCLGAPPGLTMMGVSE 211 (392)
T ss_dssp CCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG---TCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred CcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccc---cceEEEecCcccccCCCceeEEEECH
Confidence 899999999999999999999999999999999999999988877776655 78999999999988888899999998
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccc-hhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED-IEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
++. +.+.+...|.+. +..+....... .......++++..++. .++++.+ ...|.+.+.++.+.++++
T Consensus 212 ~~~--~~l~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~ 281 (392)
T 2z9v_A 212 RAW--AKMKANPLAPRA------SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY--LNEGPEAVWARHALTAKA 281 (392)
T ss_dssp HHH--HHHHTCTTSCCS------STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHH
T ss_pred HHH--HHhhhccCCCCc------eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHH
Confidence 863 222221110000 00000000000 0123446777776654 3455554 345788889999999999
Q ss_pred HHHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 391 ALGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
+.+.|.++ +++++.+.. .....++.|.+.. +++..++.+.|.+++||.+++|..+.
T Consensus 282 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~L~~~~gi~v~~g~~~~------- 338 (392)
T 2z9v_A 282 MRAGVTAM-GLSVWAASDSIASPTTTAVRTPD---------------GVDEKALRQAARARYGVVFSSGRGET------- 338 (392)
T ss_dssp HHHHHHHT-TCCBSSSSGGGBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCEECEECCGGG-------
T ss_pred HHHHHHHc-CCeeccCCccccCCceEEEECCC---------------CCCHHHHHHHHHhcCCEEEecCCCCC-------
Confidence 99999887 787766321 1234455555421 13467889988775699999876431
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||++ +++++++|+++++++|++++++
T Consensus 339 ----------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 339 ----------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp ----------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 248899996 5589999999999999998765
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=302.62 Aligned_cols=370 Identities=17% Similarity=0.182 Sum_probs=267.5
Q ss_pred HHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 043646 53 EKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKR 132 (625)
Q Consensus 53 ~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~ 132 (625)
+.++.+|++|+.. +..+|||+++.++.|+.|.+++.+.+...++++... ...........+++++++++
T Consensus 14 ~~~~~~r~~f~~~----------~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~ 82 (416)
T 1qz9_A 14 DSLAPLRQQFALP----------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLAT 82 (416)
T ss_dssp CTTGGGGGGBCCC----------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHT
T ss_pred chhHHHHHhCCCC----------CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHH
Confidence 3456677777643 468999999999999999999999886545554321 01111223677889999999
Q ss_pred HhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhcc----CCCCceEEEEcCCCCchhHHHHHH----c--C
Q 043646 133 CLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL----RDEERWVVFLGPYEHHSNLLSWRQ----S--L 202 (625)
Q Consensus 133 ~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l----~~gd~~~Vlv~~~~h~s~~~~~~~----~--G 202 (625)
++|++++ +|+|| +|+++++..++.++. .+ ++||+ +|++++.+|+++..++.. . |
T Consensus 83 ~~g~~~~-~v~~~-~g~t~al~~al~~~~-------------~~~~~~~~gd~-vii~~~~~~~~~~~~~~~~~~~~~~g 146 (416)
T 1qz9_A 83 LIGARDG-EVVVT-DTTSINLFKVLSAAL-------------RVQATRSPERR-VIVTETSNFPTDLYIAEGLADMLQQG 146 (416)
T ss_dssp TTTCCTT-SEEEC-SCHHHHHHHHHHHHH-------------HHHHHHSTTCC-EEEEETTSCHHHHHHHHHHHHHHCSS
T ss_pred HcCCCcc-cEEEe-CChhHHHHHHHHhhc-------------ccccccCCCCc-EEEEcCCCCCchHHHHHHHHHHhcCC
Confidence 9999765 89998 677777876665541 02 57775 577778899987766543 3 9
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR 282 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~ 282 (625)
++++.++. +++|+++++ +++++|++++++|+||.+.|+++|.++|++||+++|+|++++.|..++++.
T Consensus 147 ~~~~~v~~-------~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~ 214 (416)
T 1qz9_A 147 YTLRLVDS-------PEELPQAID-----QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLH 214 (416)
T ss_dssp CEEEEESS-------GGGHHHHCS-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHH
T ss_pred ceEEEeCc-------HHHHHHHhC-----CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChh
Confidence 99999986 677888886 579999999999999999999999999999999999999999888777665
Q ss_pred CCCCCCCcEEEEcCCCCCCCCCCc-eEEEEeccccccCCCCCcccCC-ceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 283 SRNIDGYDAIFLATHKFLGGPGTP-GILLISKALYQLGSSPPSTCGG-GTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~-G~l~v~~~~~~l~~~~p~~~gg-g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
.+ ++|++++|+||+++++.++ |++++++++ .+.+.+...|+ +.. ..+.......+.....++..|+++..
T Consensus 215 ~~---~~d~~~~s~~K~l~~g~~~~g~l~~~~~~--~~~l~~~~~g~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (416)
T 1qz9_A 215 QA---GADYAIGCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFGHS---RQFAMEPRYEPSNGIARYLCGTQPIT 286 (416)
T ss_dssp HH---TCSEEEECSSSTTCCCTTCCCEEEECTTT--TTTSCCSCCCGGGBC---TTSCCCSSCCBCSSGGGGCCSCCCHH
T ss_pred hc---CCCEEEecCcccCCCCCCCeEEEEECHHH--HhccCCCccccCccc---cccCCCCccCCCcchHHhcCCCCCHH
Confidence 54 6899999999998655556 999999987 44555544432 110 00100000111122345667788777
Q ss_pred HHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC-C--cEEEeCCCCC-CCcceEEEEeccCCCCCCccccccC
Q 043646 361 QMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN-Q--NIQVLGNTSV-KRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 361 ~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l-~--gv~v~~~~~~-~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
+++. ++++.+ ...+.+.+.++.+.+++++.+.|.++ | +++++.+... .+.+++.+.+.
T Consensus 287 ~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------------- 350 (416)
T 1qz9_A 287 SLAMVECGLDVF--AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-------------- 350 (416)
T ss_dssp HHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------
T ss_pred HHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------
Confidence 6543 445443 44678889999999999999999875 6 8888776321 23455544432
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC-CCCCHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP-YYMSNEEFEFIL 513 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~-~~~t~edid~ll 513 (625)
+..++.+.|.+ +||.++.. .++++||+++ ++++++|+++++
T Consensus 351 ----~~~~l~~~l~~-~gi~~~~~---------------------------------~~~~lRis~~~~~~t~~~i~~~~ 392 (416)
T 1qz9_A 351 ----EGYAVIQALID-RGVIGDYR---------------------------------EPRIMRFGFTPLYTTFTEVWDAV 392 (416)
T ss_dssp ----THHHHHHHHHT-TTEECEEE---------------------------------TTTEEEEECCTTTCCHHHHHHHH
T ss_pred ----CHHHHHHHHHh-CCcEeccC---------------------------------CCCeEEEeCcccCCCHHHHHHHH
Confidence 14578888865 69987421 1488999998 699999999999
Q ss_pred HHHHHHHHhh
Q 043646 514 AALEFIAAYG 523 (625)
Q Consensus 514 ~aL~~~~~~~ 523 (625)
++|++++.+.
T Consensus 393 ~~l~~~~~~~ 402 (416)
T 1qz9_A 393 QILGEILDRK 402 (416)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcc
Confidence 9999988764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=299.48 Aligned_cols=344 Identities=10% Similarity=0.045 Sum_probs=255.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE-eCChHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD--SYVGQRMTKMVHEASNYIKRCLGGGQADAIIF-CGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~--~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif-t~sGttaal~ 154 (625)
.+|+=+++.++.|+.|++++.+.+..+++|+.+.. ++.+..+.+.++++|+.+++++|++++++|+| | +|+|++++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t-~~~T~a~n 83 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQ-GGASLQFA 83 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEES-SHHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEc-CcHHHHHH
Confidence 35667788899999999999999988777775421 23466788999999999999999975447998 7 67888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCce-EEEEcCCCCchhHHHHHHcCCeEEEEecCCCCC--CCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERW-VVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGL--LDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~--ld~~~L~~~l~~~~~~ 231 (625)
.++..+ + ++|+. +|+.+..+|... ...+..|++++.++.++++. ++++. + |+
T Consensus 84 ~~~~~~---------------~-~~~~~~~i~~~~~~~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~----- 138 (361)
T 3m5u_A 84 MIPMNL---------------A-LNGVCEYANTGVWTKKAI-KEAQILGVNVKTVASSEESNFDHIPRV-E--FS----- 138 (361)
T ss_dssp HHHHHH---------------C-CSSCEEEEECSHHHHHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC-----
T ss_pred HHHHhc---------------C-CCCeEEEEeCCHHHHHHH-HHHHHcCCceEEEecccCcCCCcCChh-h--cC-----
Confidence 887766 4 56652 344444444433 23345699999999988764 56665 3 65
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|+++|.+|.||++.|. | ++ +|+++++|++|++|..++|++. +|++++|+|||+| |.|+|++++
T Consensus 139 ~~t~lv~~~~~e~~tG~~~~~--i---~~-~~~~~~vD~~q~~g~~~id~~~-----~d~~~~s~~K~~g-p~G~g~l~~ 206 (361)
T 3m5u_A 139 DNADYAYICSNNTIYGTQYQN--Y---PK-TKTPLIVDASSDFFSRKVDFSN-----IALFYGGVQKNAG-ISGLSCIFI 206 (361)
T ss_dssp TTSSEEEEESEETTTTEECSS--C---CC-CSSCEEEECGGGTTSSCCCCTT-----EEEEEEETTTTSS-CTTCEEEEE
T ss_pred CCCCEEEEeCCCCCcceeCCc--c---cc-cCCEEEEEcccccCCCCCCccc-----CCEEEEechhccC-CCccEEEEE
Confidence 689999999999999999772 3 33 4999999999999999999974 5999999999996 999999999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhc-CHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYI-GYEVIKKQEDVYI 388 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~-g~~~i~~~~~~l~ 388 (625)
++++ ++.+.|.... ... .+....+.....|||++.+++. ++++++ ... |++.+.+|++.++
T Consensus 207 ~~~~--~~~~~~~~~p-~~~-----------~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 207 RKDM--LERSKNKQIP-SML-----------NYLTHAENQSLFNTPPTFAIYMFNLEMDWL--LNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp EHHH--HHHHHTCCCC-GGG-----------CHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHH
T ss_pred cHHH--HhhhcCCCCC-cee-----------ehHHHhhcCCCCCCccHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Confidence 9988 3333231100 000 0000112344568999988764 556665 566 8999999999999
Q ss_pred HHHHHhhCCCCcE-EEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 389 ESALGRILPNQNI-QVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 389 ~~l~~~L~~l~gv-~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.|.+++++ +++.+. ..+. .+++|.+.... .++ ..+...| +++||.++.|..+.
T Consensus 271 ~~l~~~L~~~~g~~~~~~~~-~~rs~~ivsf~~~~~~-------------~~~-~~~~~~L-~~~gI~~~~g~~~~---- 330 (361)
T 3m5u_A 271 TMLYECIDLSNGFYKGHADK-KDRSLMNVSFNIAKNK-------------DLE-PLFVKEA-EEAGMIGLKGHRIL---- 330 (361)
T ss_dssp HHHHHHHHTSTTSEEESSCG-GGBCSSEEEEEESSCT-------------THH-HHHHHHH-HHTTEECCBCCTTT----
T ss_pred HHHHHHHHHCCCeeeccCCH-HHcCCeEEEEECCCch-------------hhh-HHHHHHH-HHCCCEEecCCCcc----
Confidence 9999999999866 665442 2344 57888874311 122 3577777 55799998775432
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+|+|++.++|++|||+++++|+++.++
T Consensus 331 ---------------------------g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 331 ---------------------------GGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ---------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 55999999999999999999999998765
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=300.04 Aligned_cols=374 Identities=18% Similarity=0.216 Sum_probs=271.3
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+|||+++.+++|+.|.+++.+.+...+++|+. .+..+....+..+++++++++++|++++ +|+|| +|+++++..
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~ 93 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQ-DIIFT-SGGTESNNL 93 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SCHHHHHHH
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEe-CChHHHHHH
Confidence 46799999999999999999999988666677775 3556666788899999999999999766 89998 788888888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCc-----------eEEEEcCCCCchhHHHHHH----cCCeEEEEecCC-CCCCCHH
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEER-----------WVVFLGPYEHHSNLLSWRQ----SLAEVVEIGLDD-NGLLDIE 219 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~-----------~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~-~~~ld~~ 219 (625)
++.++..... +. ..++||+ ..|+++..+|+++..+|.. .|++++.++++. ++.+|++
T Consensus 94 ~~~~~~~~~~---~~----~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~ 166 (432)
T 3a9z_A 94 VIHSTVRCFH---EQ----QTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVE 166 (432)
T ss_dssp HHHHHHHHHH---HH----HHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHH
T ss_pred HHHHHHhhhh---hc----cccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHH
Confidence 7776520000 00 0024431 2588889999999877654 589999999986 7789999
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC----------CEEEEeccCcCCCccccCCCCCCCCC
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG----------GFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g----------~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
+|+++++ +++++|++++++||||.+.|+++|.++|+++| +++|+|++++.+..++++... ++
T Consensus 167 ~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~---~~ 238 (432)
T 3a9z_A 167 DILAAVR-----PTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDL---GV 238 (432)
T ss_dssp HHHHTCC-----TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHH---CC
T ss_pred HHHHhcc-----CCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhc---CC
Confidence 9999887 57999999999999999999999999999999 999999999988777766554 78
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal 367 (625)
|++++|+||++| |. +|+++++++.. ...+.+...|++. ..++..++++..+.. .+++
T Consensus 239 d~~~~s~~K~~g-~~-~G~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~aal 297 (432)
T 3a9z_A 239 DFLTIVGHKFYG-PR-IGALYVRGVGK-LTPLYPMLFGGGQ------------------ERNFRPGTENTPMIAGLGKAA 297 (432)
T ss_dssp SEEEEEGGGTTC-CS-CEEEEETTBTT-TBCCCCSCCSSCG------------------GGGTSCSCCCHHHHHHHHHHH
T ss_pred CEEEEehhHhcC-Cc-ceEEEEccccc-cCCcCceeecCCc------------------cccccCCCcCHHHHHHHHHHH
Confidence 999999999986 77 89999998751 1234555555432 234556777766543 3445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE--EEeCCC-CCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI--QVLGNT-SVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFV 443 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv--~v~~~~-~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v 443 (625)
+++ + .+.+.+.++.+++++++.+.|.+++++ .+.++. ...+.+ +++|.+... +.+...+
T Consensus 298 ~~~--~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 360 (432)
T 3a9z_A 298 DLV--S-ENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS--------------QLRGYMV 360 (432)
T ss_dssp HHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST--------------TCCHHHH
T ss_pred HHH--H-hhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC--------------CCcHHHH
Confidence 544 2 257788899999999999999876554 333441 112334 666665421 1234456
Q ss_pred HHHhhhhcCeeeecCCCCCchhh----Hhhh--cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 444 ATLFNDLFGIQARGGCACAGPYG----HTLL--AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 444 ~~~L~~~~gI~v~~G~~~~~~~~----~~~l--~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.+.+ .+|.++.|..|...+. +.+. ++... ...+++|||++.++|++|+++++++|+
T Consensus 361 ~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~---------------~~~~~iRis~~~~~t~eei~~~~~~l~ 422 (432)
T 3a9z_A 361 LAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVD---------------VARNAVRLSVGRSTTRAEVDLIVQDLK 422 (432)
T ss_dssp HHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH---------------HHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHh---cCeEEeccccccCCCCCCccHHHHhcCCCcc---------------ccCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 6555 3899999988863210 1111 11100 014899999999999999999999999
Q ss_pred HHHHhh
Q 043646 518 FIAAYG 523 (625)
Q Consensus 518 ~~~~~~ 523 (625)
+++...
T Consensus 423 ~~~~~~ 428 (432)
T 3a9z_A 423 QAVNQL 428 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987653
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=296.88 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=262.3
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
++.+|+++.+..+.++.+.+++.+.+.. + ..........++++++++++|++++++|++| +|+++++..
T Consensus 17 ~~~~~~~~~g~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~ 85 (393)
T 2huf_A 17 TPNKLLMGPGPSNAPQRVLDAMSRPILG-----H-----LHPETLKIMDDIKEGVRYLFQTNNIATFCLS-ASGHGGMEA 85 (393)
T ss_dssp CCCCEECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEES-SCHHHHHHH
T ss_pred CCCeEEecCCCCCCCHHHHHHHHhhhcc-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEc-CcHHHHHHH
Confidence 4567889888888899999988665532 1 1233567788999999999999754368888 677788888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
++.++ +++||+ |+++.++|+++. ...+..|++++.++++.++.+|+++|++++++ .+
T Consensus 86 ~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~ 144 (393)
T 2huf_A 86 TLCNL---------------LEDGDV--ILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI----HK 144 (393)
T ss_dssp HHHHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HC
T ss_pred HHHHH---------------hCCCCE--EEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc----cC
Confidence 88776 468885 888888898853 22345799999999988888999999999983 17
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK 313 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~ 313 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++
T Consensus 145 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~G~~~~~~ 221 (393)
T 2huf_A 145 PSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRW---EIDAMYTGSQKVLGAPPGITPVSFSH 221 (393)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSSSTTCCCSSCEEEEECH
T ss_pred CcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhc---CccEEEECCCcccccCCCeEEEEECH
Confidence 899999999999999999999999999999999999999988877776654 78999999999988888899999998
Q ss_pred cccc-cCCC----CCcccCCceEEeeccccccccccc-cchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHH
Q 043646 314 ALYQ-LGSS----PPSTCGGGTVNYVNAFDEKDTLYL-EDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 314 ~~~~-l~~~----~p~~~ggg~v~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~ 385 (625)
++.. +... .+...+++. ...++ .....++..++++..+.+. ++++.+ ...+.+.+.++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~ 289 (393)
T 2huf_A 222 RAVERYKRRNTKVKVYYWDMSL----------VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMA--CEEGLPALIARHE 289 (393)
T ss_dssp HHHHHHHTCSSCCSCGGGCHHH----------HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHH
T ss_pred HHHHHHhhcCCCCceEEEchHH----------HHhhhccccccCCCCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHH
Confidence 7632 1111 121111000 00000 0112345567877776543 344443 3346888889999
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
.+++++.+.|.++ +++++.+.. .+.+ ++.+.+.. +++..++.+.|.+++||.+++|..|.
T Consensus 290 ~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~L~~~~gi~v~~g~~~~-- 350 (393)
T 2huf_A 290 DCAKRLYRGLQDA-GFELYADPK-DRLSTVTTIKVPQ---------------GVDWLKAAQYAMKTYLVEISGGLGPT-- 350 (393)
T ss_dssp HHHHHHHHHHHHT-TCCBSSCGG-GBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCEECBCCCGGG--
T ss_pred HHHHHHHHHHHHc-CCeeccCcc-ccCCcEEEEEcCC---------------CCCHHHHHHHHHHhCCEEEecCcccc--
Confidence 9999999999887 777765531 1334 55554421 23467888888776799999887542
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++ ++.++++|+++++++|++++.+.
T Consensus 351 ---------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 351 ---------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp ---------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 248999999 55568999999999999988764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=297.86 Aligned_cols=366 Identities=14% Similarity=0.117 Sum_probs=264.0
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
...|+++.+..+.++.+.+++.+.+.. + ++........++++++++++|.+++++|++| +|+++++..+
T Consensus 17 ~~~~~~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~t~al~~~ 85 (396)
T 2ch1_A 17 PEKIMMGPGPSNCSKRVLTAMTNTVLS-----N-----FHAELFRTMDEVKDGLRYIFQTENRATMCVS-GSAHAGMEAM 85 (396)
T ss_dssp CCCBCCSSSSCCCCHHHHHHTTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHH
T ss_pred CcceeecCCCCCCCHHHHHHhcccccc-----C-----CChhHHHHHHHHHHHHHHHhCCCCCcEEEEC-CcHHHHHHHH
Confidence 456777777777888888887654421 1 1233446688999999999999754368888 7788888888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+.++ +++||+ |+++.++|+++. ..++..|++++.++++.++.+|+++|++++++ .++
T Consensus 86 ~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~ 144 (396)
T 2ch1_A 86 LSNL---------------LEEGDR--VLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL----HQP 144 (396)
T ss_dssp HHHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH----HCC
T ss_pred HHHh---------------cCCCCe--EEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHh----CCC
Confidence 8876 478885 888889999874 25567899999999988888999999999984 268
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++||||.+.|+++|.++|+++|+++|+|++++.+..++++..+ ++|+++.|+||++++|.|+|+++++++
T Consensus 145 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~ 221 (396)
T 2ch1_A 145 KCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPK 221 (396)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHH
T ss_pred CEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc---CcCEEEEcCCccccCCCCeEEEEECHH
Confidence 99999999999999999999999999999999999999988877777665 789999999999998888999999887
Q ss_pred ccc-cCCC----CCcccCCceEEeecccccccccccc-chhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHH
Q 043646 315 LYQ-LGSS----PPSTCGGGTVNYVNAFDEKDTLYLE-DIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 315 ~~~-l~~~----~p~~~ggg~v~~~~~~~~~~~~~~~-~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.. +... .+...+... + ..++. ....++..++++..+.. .++++.+ ...+.+.+.++.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~ 289 (396)
T 2ch1_A 222 ALDVIRNRRTKSKVFYWDLLL------L----GNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIE 289 (396)
T ss_dssp HHHHHHTCSSCCSCGGGCHHH------H----HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHH
T ss_pred HHHhhhhccCcccceEechHH------H----HHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHH
Confidence 632 1111 111111000 0 00000 00123455677665543 2344443 23578888899999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++.+.|.++ +++++.+....+.+ ++.+.+.. +++..++.+.|.+++||.+++|..|.
T Consensus 290 ~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~L~~~~gi~v~~g~~~~--- 350 (396)
T 2ch1_A 290 CAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK---------------GVDWWKVSQYAMNNFSLEVQGGLGPT--- 350 (396)
T ss_dssp HHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCBCCBCCCGGG---
T ss_pred HHHHHHHHHHHC-CCeeccCCccccCCceEEEEcCC---------------CCCHHHHHHHHHHhCCEEEecCcccc---
Confidence 999999999887 77777653212233 44554421 23467888888776799999876432
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhhhhcccCcccccccc
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYGHRFLPLYHFNVKAG 537 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~~~~~~ 537 (625)
.++++||++ ++.++++|+++++++|++++++. .+.|.|+++++
T Consensus 351 --------------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~---~~~~~~~~~~~ 394 (396)
T 2ch1_A 351 --------------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT---HPDYIFEESNG 394 (396)
T ss_dssp --------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH---CTTCCCC----
T ss_pred --------------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh---CccEEeccccC
Confidence 248899999 66779999999999999998753 47799998874
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=296.34 Aligned_cols=362 Identities=14% Similarity=0.123 Sum_probs=266.6
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
..|+...+..+.++.|.+++.+.+.. + ......+..+++++++++++|.+.++.++++ +|+++++..++
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~sgt~al~~~~ 81 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLIG-----Q-----YDPAMTHYMNEVMALYRGVFRTENRWTMLVD-GTSRAGIEAIL 81 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEE-SCHHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEC-CCcHHHHHHHH
Confidence 34777777777888998888654311 1 2234557889999999999999866347887 45666677777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS--NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
.++ +++||+ |+++...|++ ....++..|++++.++.+.++.+|+++|++++++ .+++
T Consensus 82 ~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~ 140 (411)
T 3nnk_A 82 VSA---------------IRPGDK--VLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR----IRPR 140 (411)
T ss_dssp HHH---------------CCTTCE--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCS
T ss_pred HHh---------------cCCCCE--EEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh----CCCe
Confidence 766 578886 8888999988 5566777899999999988889999999999984 2799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++++|+||.+.|+++|+++|++||+++|+|++++.+..++++... ++|++++|+||++++|.|+|++++++++
T Consensus 141 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~ 217 (411)
T 3nnk_A 141 LLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVW---GLDAVSAGMQKCLGGPSGTSPITLSARM 217 (411)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSTTTTCCCSSEEEEEECHHH
T ss_pred EEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhcc---CCcEEEecCccccCCCCceEEEEECHHH
Confidence 9999999999999999999999999999999999999998888888766 7899999999998888899999999887
Q ss_pred cc-cC---CCCCcccCCceEEeeccccccccccccc-------hhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHH
Q 043646 316 YQ-LG---SSPPSTCGGGTVNYVNAFDEKDTLYLED-------IEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 316 ~~-l~---~~~p~~~ggg~v~~~~~~~~~~~~~~~~-------~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~ 382 (625)
.. +. .+.+.+.|++....... .....+++. ...++..++++..+... +++..+ ...|.+.+.+
T Consensus 218 ~~~~~~~~~~~~~~~g~~~~gg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~ 293 (411)
T 3nnk_A 218 EEAIRRRKCVEEGIRTDAHRDGDEE--MIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLI--LQEGLDYGIA 293 (411)
T ss_dssp HHHHHTTCCCCGGGCCTTCCCCSSC--CCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHH
T ss_pred HHHHhhcccccccccccccccccCC--CCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHH
Confidence 32 11 12233333332110000 000011110 02345667877776654 344443 4557889999
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|.++ +++++.+.......++.|.+ +. +++..++.+.|.+++||.+++|....
T Consensus 294 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~l~~~l~~~~gi~v~~g~~~~ 357 (411)
T 3nnk_A 294 RHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVI-PQ--------------GINGDQARKLMLEDFGIEIGTSFGPL 357 (411)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEEC-CT--------------TCCHHHHHHHHHHHHSEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEEC-CC--------------CCCHHHHHHHHHHhcCeEEeCccCCC
Confidence 9999999999999887 78777653222334455544 21 23467899988777799999773210
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++ ++.++++|+++++++|++++.+.
T Consensus 358 -----------------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 358 -----------------------------HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp -----------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------------CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 247999998 77789999999999999998763
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=296.00 Aligned_cols=350 Identities=16% Similarity=0.134 Sum_probs=259.7
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
..+|+|+.+.++.++.+.+++.+.+.. + ++....+..+++++++++++|.++++++++| +|+++++..+
T Consensus 33 ~~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~al~~~ 101 (393)
T 1vjo_A 33 PSRLLLGPGPSNAHPSVLQAMNVSPVG-----H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVS-GTGTAAMEAT 101 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHH
T ss_pred ccceeccCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CchHHHHHHH
Confidence 357999999999999999998765531 1 2234567889999999999999643268998 6788888888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS--NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+.++ +++||+ |+++.+.|++ +...++..|++++.++++.++.+|+++|++++++. ++
T Consensus 102 ~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~----~~ 160 (393)
T 1vjo_A 102 IANA---------------VEPGDV--VLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH----RP 160 (393)
T ss_dssp HHHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH----CC
T ss_pred HHhc---------------cCCCCE--EEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC----Cc
Confidence 8876 467885 8888899988 66677788999999999888889999999999831 78
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
++|++++++||||.+.|+++|.++|+++|+++|+|++++.|..++++... ++|++++|+||++++|+++|+++++++
T Consensus 161 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 161 AILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred eEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCccccc---CccEEEEcCcccccCCCceEEEEECHH
Confidence 99999999999999999999999999999999999999988777776654 789999999999999999999999988
Q ss_pred ccc-cCC----CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 315 LYQ-LGS----SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 315 ~~~-l~~----~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
+.. +.. ..+...+.. +.. .+. ...++..|+++..... .++++.+ ...+.+.+.++.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~---~~~-------~~~--~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~ 303 (393)
T 1vjo_A 238 AIEKLQRRRTKVANWYLDMN---LLG-------KYW--GSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKN 303 (393)
T ss_dssp HHHHHHTCSSCCSCSTTCHH---HHH-------HHH--STTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCceecCcH---hhh-------hhh--ccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHH
Confidence 632 111 111111100 000 000 0112333466655443 3444443 345778889999999
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ +++++.+.......++.+.+ +. +.+..++.+.|.+++||.+++|..|.
T Consensus 304 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v~~g~~~~----- 362 (393)
T 1vjo_A 304 VEYLWERLEDI-GLSLHVEKEYRLPTLTTVCI-PD--------------GVDGKAVARRLLNEHNIEVGGGLGEL----- 362 (393)
T ss_dssp HHHHHHHHHHT-TCCBSSCGGGBCSSEEEEEC-CT--------------TCCHHHHHHHHHHHHCEECEECCGGG-----
T ss_pred HHHHHHHHHHc-CCcccCCccccCCcEEEEEc-CC--------------CCCHHHHHHHHHhhCCEEEecCcccc-----
Confidence 99999999887 77776653211123444443 21 13467888888776699999887543
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||++ ++.++++++++++++|++++
T Consensus 363 ------------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 363 ------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp ------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 248999995 56678888999999999875
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=290.83 Aligned_cols=346 Identities=12% Similarity=0.134 Sum_probs=255.3
Q ss_pred ccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHH
Q 043646 81 ADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 81 ld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~ 159 (625)
+-+.+..+.++.+.+++.+.+.. + .+....+..+++++++++++|++.+ +++++| +|+++++. ++..
T Consensus 5 ~~~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~-~g~t~al~-~~~~ 72 (384)
T 3zrp_A 5 LLHVGPTTIKEDVLVAGLENNVG-----F-----TSKEFVEALAYSLKGLRYVMGASKNYQPLIIP-GGGTSAME-SVTS 72 (384)
T ss_dssp -CCSSCSCCCHHHHHHTTCCSCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEE-SCHHHHHH-HGGG
T ss_pred eccCCCCCCCHHHHHHhhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEc-CCcHHHHH-HHHh
Confidence 33445567788888888665421 1 2344577889999999999999872 379998 67777787 6554
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ +++||+ |+++...|++.. ...+..|++++.++++.++.+|+++|++++++ .++++|
T Consensus 73 ~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v 131 (384)
T 3zrp_A 73 L---------------LKPNDK--ILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK----SEYKLV 131 (384)
T ss_dssp G---------------CCTTCE--EEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH----SCEEEE
T ss_pred h---------------cCCCCE--EEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh----CCCcEE
Confidence 4 578885 888888887742 23355799999999998889999999999984 379999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++++++||||.+.|+++|.++|++||+++|+|++++.+..+.++..+ ++|++++|+||++++|.|+|++++++++..
T Consensus 132 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~ 208 (384)
T 3zrp_A 132 ALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEW---NVDVYLTASQKALGSAAGLGLLLLSPKALS 208 (384)
T ss_dssp EEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTT---TCSEEEEETTSTTCCCSSEEEEEECHHHHH
T ss_pred EEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcccccccc---CCCEEEecCcccccCCCceEEEEECHHHHH
Confidence 99999999999999999999999999999999999999888887765 789999999999988888999999988732
Q ss_pred cCCC-CCcccCCceEEeeccccccccccccchhhhhc------CCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 318 LGSS-PPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN------GGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 318 l~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~------~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
.+ .+....+ +..+...+. .....++ .|+++...... +++.+. +..+.+.+.++.+.++
T Consensus 209 --~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~ 275 (384)
T 3zrp_A 209 --ILDSQNSIAG--------YYLDLRNWL-PVMRGAEEGKAAYFATPPVHVILQLAEAFRLI--EKEGIENRIKRHTMVA 275 (384)
T ss_dssp --HHHHCCCSCC--------STTCHHHHH-HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHH
T ss_pred --HhcCCCCCCc--------ccccHHHHH-HHHHhhcccCCCcCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHH
Confidence 22 1111000 000000110 1111222 25777666543 444444 4567889999999999
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
+++.+.|.++ +++++.+....+.+ ++.|.+ ++ .+..++.+.|.+ +||.+++|..|.
T Consensus 276 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~-~gi~v~~g~~~~----- 332 (384)
T 3zrp_A 276 SAIRAGLEAL-GLEIVARRPESYSNTVTGVIL-KV---------------ADPQKVLAGTVN-EGVEFAPGVHPA----- 332 (384)
T ss_dssp HHHHHHHHHT-TCCBSCSSGGGBCSSEEEEEC-SS---------------SCHHHHHHHHHT-TTCCCEECCCTT-----
T ss_pred HHHHHHHHHC-CCeEccCcccccCccEEEEEC-CC---------------CCHHHHHHHHHH-CCEEEecCCCCC-----
Confidence 9999999988 88877654222334 444444 21 246788999976 599999876542
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+++||+++.+++++|+++++++|++++.+.
T Consensus 333 -------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 333 -------------------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp -------------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 1789999999999999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=285.01 Aligned_cols=340 Identities=16% Similarity=0.064 Sum_probs=255.9
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+.+++.+++++.+.+++.+.+.. + .++...+...++++++++++|++++ ++++| +|+++++..++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~-~i~~~-~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-----H-----RTEAAREVFLKARGLLREAFRTEGE-VLILT-GSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSE-EEEEE-SCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-----c-----cCHHHHHHHHHHHHHHHHHhCCCCc-eEEEc-CchHHHHHHHHHh
Confidence 777888889999999999876631 1 2344567788999999999999764 89998 6788888888887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ +++||+ |+++..+|+++. ..++..|++++.++++.++.+|+++|++ +++++|
T Consensus 71 ~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~--------~~~~~v 125 (352)
T 1iug_A 71 L---------------FAPGER--VLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK--------EGYAGL 125 (352)
T ss_dssp H---------------CCTTCE--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC--------SSCSEE
T ss_pred c---------------cCCCCe--EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc--------cCCcEE
Confidence 6 468885 999999999975 2234579999999998888889888765 268999
Q ss_pred EEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
++++++||||.+.|+++|.++|++| |+++|+|++++.+..++++..+ ++|++++|+|||+++|.|+|+++++++.
T Consensus 126 ~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 202 (352)
T 1iug_A 126 LLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSPRA 202 (352)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceecccc---CeeEEEecCcccccCCCceeEEEECHHH
Confidence 9999999999999999999999999 9999999999988777776654 6899999999988888889999999887
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
. +.+.+ ++.. .+...+......+...++++..... .++++.+ +.. .+.+.++.+++++++.+
T Consensus 203 ~--~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~-~~~~~~~~~~~~~~l~~ 266 (352)
T 1iug_A 203 L--ERLKP---RGYY--------LDLARELKAQKEGESAWTPAINLVLAVAAVLEEV--LPR-LEEHLALKAWQNALLYG 266 (352)
T ss_dssp H--HTCCC---CSST--------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--GGG-HHHHHHHHHHHHHHHHH
T ss_pred H--HHhhC---CCce--------eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHH
Confidence 3 33333 1110 0001111111223445677666543 3445443 333 77888899999999999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|+++ +++++.+. ....++.|.+.. +++..++.+.|.+ +||.+++|..+.
T Consensus 267 ~L~~~-g~~~~~~~--~~~~~~~~~~~~---------------~~~~~~~~~~l~~-~gi~v~~~~~~~----------- 316 (352)
T 1iug_A 267 VGEEG-GLRPVPKR--FSPAVAAFYLPE---------------GVPYARVKEAFAQ-RGAVIAGGQGPL----------- 316 (352)
T ss_dssp HHHHT-TCEESCSS--BCTTCEEEECCT---------------TCCHHHHHHHHHT-TTEECEECCGGG-----------
T ss_pred HHHHC-CCcccccc--cCCeEEEEEcCC---------------CCCHHHHHHHHHH-CCEEEEeCCCcc-----------
Confidence 99887 88887652 133455555421 1346788898866 599999876321
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||+++.+++++|+++++++|++++++.
T Consensus 317 ------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 317 ------------------KGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp ------------------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 24889999999999999999999999987653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-33 Score=291.72 Aligned_cols=350 Identities=13% Similarity=0.083 Sum_probs=256.2
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+.+.+..+.|+.+.+++.+.+.. +..+.+..+....+..+++++++++++|.+.++++++| +|+++++..++.+
T Consensus 6 ~~~~p~p~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~-~g~t~al~~~~~~ 80 (362)
T 3ffr_A 6 IYFTPGPSELYPTVRQHMITALDE----KIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL-ASATEIWERIIQN 80 (362)
T ss_dssp EEECSSSCCCCTTHHHHHHHHHHT----TTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEE-SCHHHHHHHHHHH
T ss_pred eeccCCCcCCCHHHHHHHHHHhcC----CccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCchHHHHHHHHh
Confidence 566666677888999888777643 11011123455678899999999999998654479998 6788889988887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ .++ + +++....|++. ....+..|++++.++.+.++.+|+++|+ ++ +++++|
T Consensus 81 l---------------~~~--~--~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~-----~~~~~v 134 (362)
T 3ffr_A 81 C---------------VEK--K--SFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP-----ADAEII 134 (362)
T ss_dssp H---------------CSS--E--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC-----TTCCEE
T ss_pred c---------------cCC--c--EEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc-----CCccEE
Confidence 7 344 2 44444445542 2234567999999999888889999998 43 689999
Q ss_pred EEecccCccccccCHHHHHHHHHHc-CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~-g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
++++++||||.+.|+++|+++|++| |+++|+|++++.+..++++. .+|++++|+||++++|.|+|++++++++
T Consensus 135 ~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~-----~~d~~~~s~~K~~~~~~G~g~~~~~~~~- 208 (362)
T 3ffr_A 135 CLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWT-----KIDSVFFSVQKCFGLPAGLGVWILNDRV- 208 (362)
T ss_dssp EEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTT-----SCSEEEEETTSTTCCCSCCEEEEEEHHH-
T ss_pred EEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChh-----HCcEEEEecccccCCCCceEEEEECHHH-
Confidence 9999999999999999999999999 99999999999988777664 3799999999999988889999999887
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
++.+.+...||+...+. .+...+..........++++..+... +++.++ ...|.+.+.++.+.+++++.+.
T Consensus 209 -~~~~~~~~~gg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 281 (362)
T 3ffr_A 209 -IEKSKALLAKRKSIGTY----HTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQISADGIRKQTEEKAALINTY 281 (362)
T ss_dssp -HHHHHHHHHTTCCCCST----TSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhhccccCCCCccc----ccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHH
Confidence 33343444444432111 11111222222233367777766543 444443 3456889999999999999999
Q ss_pred hCCCCcEEEeCCCCC-CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 395 ILPNQNIQVLGNTSV-KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 395 L~~l~gv~v~~~~~~-~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
|.++|+++++.+... ....+++|.+.. +..++.+.|.+ +||.+++|..|.
T Consensus 282 L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~-~gi~~~~g~~~~----------- 332 (362)
T 3ffr_A 282 IESSKVFSFGVEDAKLRSMTTIVANTTM-----------------LPGEINKILEP-FDMAVGAGYGSK----------- 332 (362)
T ss_dssp HHHCSSEEESSSCGGGBCSSEEEEEESS-----------------CHHHHHHHHGG-GTEEEEECSGGG-----------
T ss_pred HHHccCceeccCChhhcCCceEEEecCC-----------------CHHHHHHHHHH-CCeEEecCcccc-----------
Confidence 999999999874322 234555555432 26688999976 499999886442
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++|||++.+++++|+++++++|++++
T Consensus 333 ------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 ------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 24899999999999999999999999764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=293.06 Aligned_cols=356 Identities=13% Similarity=0.102 Sum_probs=258.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
.|+.+.+..+.++.|.+++.+.+.. + ......+...++++++++++|.+.++.|++| +|+++++..++.
T Consensus 24 ~~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~gg~~al~~~~~ 92 (393)
T 3kgw_A 24 RLLLGPGPSNLAPRVLAAGSLRMIG-----H-----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVS-GSGHCAMETALF 92 (393)
T ss_dssp CEECSSSCCCCCHHHHHHTTCCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEES-CCTTTHHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHhcccccC-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCcHHHHHHHHH
Confidence 3667777777888988888653311 1 1233457788999999999999765458888 555666777777
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
++ +++||+ |+++.+.|++. ....+..|++++.++++.++.+|+++|++++++ .++++
T Consensus 93 ~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~ 151 (393)
T 3kgw_A 93 NL---------------LEPGDS--FLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ----HKPVL 151 (393)
T ss_dssp HH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSE
T ss_pred hc---------------CCCCCE--EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh----CCCcE
Confidence 66 578886 77777777543 445667899999999988889999999999984 27999
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||++++|.|+|++++++++.
T Consensus 152 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~g~~~~~~~~~ 228 (393)
T 3kgw_A 152 LFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQ---GIDIMYSSSQKVLNAPPGISLISFNDKAK 228 (393)
T ss_dssp EEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCCEEEEESSSTTCCCSSCEEEEECHHHH
T ss_pred EEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhc---CCCEEEecCcccccCCCceeEEEECHHHH
Confidence 999999999999999999999999999999999999988888777665 78999999999998888899999998873
Q ss_pred ccCCCCCcccCCceEEeecccccccc---cccc-chhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDT---LYLE-DIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~---~~~~-~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
+ .+.+...++.. +..+.. .++. ....++..++++..+... ++++.. +..+.+.+.++.++++++
T Consensus 229 ~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~ 298 (393)
T 3kgw_A 229 Y--KVYSRKTKPVS------FYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI--AEQGLENCWRRHREATAH 298 (393)
T ss_dssp H--HHHTCSSCCSC------STTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHH
T ss_pred H--HHhccCCCCCc------eeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHH
Confidence 2 22111111111 000000 0000 012234567777666543 334433 456788899999999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|.++ +++++.+....+.+.+.+...+. +.+..++.+.|.+++||.+++|..+.
T Consensus 299 l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~gi~v~~g~~~~-------- 355 (393)
T 3kgw_A 299 LHKHLQEM-GLKFFVKDPEIRLPTITTVTVPA--------------GYNWRDIVSYVLDHFSIEISGGLGPT-------- 355 (393)
T ss_dssp HHHHHHHT-TCCBSSSSGGGBCSSEEEEECCT--------------TBCHHHHHHHHHHHHCEECBCCCGGG--------
T ss_pred HHHHHHHc-CCeeccCChhhcCCeEEEEeCCC--------------CCCHHHHHHHHHHhCCEEEeCCcccC--------
Confidence 99999888 78776543233445544333331 23467889888776699999876432
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++ ++.++++|+++++++|++++++.
T Consensus 356 ---------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 388 (393)
T 3kgw_A 356 ---------------------EERVLRIGLLGYNATTENVDRVAEALREALQHC 388 (393)
T ss_dssp ---------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHS
T ss_pred ---------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhh
Confidence 248999998 66679999999999999998764
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=300.28 Aligned_cols=412 Identities=17% Similarity=0.140 Sum_probs=268.7
Q ss_pred cccccccCCCCC-CCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc
Q 043646 35 TCSEFKNDHHPP-HSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS 113 (625)
Q Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~ 113 (625)
.++...+...+| ...+.++.++.+++.+... .... ...|+++..++..|..+...+... +.|++...+
T Consensus 72 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~------~p~~~~~~~~~~~~~~~~~~~l~~----~~n~~~~~~ 140 (515)
T 2jis_A 72 EELKQLLDLELRSQGESQKQILERCRAVIRYS-VKTG------HPRFFNQLFSGLDPHALAGRIITE----SLNTSQYTY 140 (515)
T ss_dssp HHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHS-CCTT------STTEESSSCCCCCHHHHHHHHHHH----HHCCCTTCT
T ss_pred HHHHhhcccCCCCCCCCHHHHHHHHHHHhcCC-CCCC------CCCeEEEeeCCCCHHHHHHHHHHH----HhccCCCch
Confidence 344444556666 4477888888888765432 1111 224999999998888777644332 236665445
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccC-CCC----ceEEEEcC
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR-DEE----RWVVFLGP 188 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd----~~~Vlv~~ 188 (625)
..++...+++.++++++++++|.+.+ .++||++||.+++..+..++....+ .++ +|+ +.+|+++.
T Consensus 141 ~~s~~~~~le~~~~~~la~l~g~~~~-~~~~t~ggtea~~~al~~ar~~~~~---------~~~~~G~~~~~~~~vl~s~ 210 (515)
T 2jis_A 141 EIAPVFVLMEEEVLRKLRALVGWSSG-DGIFCPGGSISNMYAVNLARYQRYP---------DCKQRGLRTLPPLALFTSK 210 (515)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCSSC-EEEEESSHHHHHHHHHHHHHHHHCT---------THHHHCGGGSCCEEEEEET
T ss_pred hhchHHHHHHHHHHHHHHHHhCCCCC-CeEEcCCcHHHHHHHHHHHHHHHhh---------HHhhcCccccCCeEEEECC
Confidence 56777889999999999999999855 7999965565544443332210000 011 243 34699999
Q ss_pred CCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHHHHcCC
Q 043646 189 YEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLLHQYGG 264 (625)
Q Consensus 189 ~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~ 264 (625)
.+|+++..+++..|. +++.||++.++.+|+++|+++|+++...+ +|++|++++++|+||.+.|+++|+++|++||+
T Consensus 211 ~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~ 290 (515)
T 2jis_A 211 ECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL 290 (515)
T ss_dssp TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence 999999999998888 99999998889999999999998533222 58999999999999999999999999999999
Q ss_pred EEEEeccCcCCCcccc-----CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc--ccc--cCCCCCcccCCceEEeec
Q 043646 265 FACFDFAASGPYVKIN-----LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA--LYQ--LGSSPPSTCGGGTVNYVN 335 (625)
Q Consensus 265 ~vivD~A~~~g~~~id-----~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~--~~~--l~~~~p~~~ggg~v~~~~ 335 (625)
|+|+|+|++.+....+ +.. ..++|++++++|||+++|.|+|+++++++ +.+ .....++..+++.. +..
T Consensus 291 ~l~vD~a~~~~~~~~~~~~~~~~g--~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~ 367 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHRHLLDG--IQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKF-YDV 367 (515)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTT--GGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CC-SCG
T ss_pred eEEEehhhhhHHHhChhhHhhcCC--CccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccc-ccc
Confidence 9999999998877654 222 13789999999999999999999999987 421 11123333333220 000
Q ss_pred cccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceE
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAIL 415 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~ 415 (625)
.+.. ..+.-...++ .+ .+.+ .+++..+ ...|++.+.++...+++++.+.|.++|+++++.+. ..+++
T Consensus 368 ~~~~--~~~~~~~~rr--~~---al~~-~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~~~v 434 (515)
T 2jis_A 368 ALDT--GDKVVQCGRR--VD---CLKL-WLMWKAQ--GDQGLERRIDQAFVLARYLVEEMKKREGFELVMEP---EFVNV 434 (515)
T ss_dssp GGCC--GGGCSCSSCC--CC---HHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCC---SSSEE
T ss_pred cCCC--CCCCCCCCCc--cc---HHHH-HHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---CeeEE
Confidence 0000 0000000011 11 1111 1223332 34567888899999999999999999999998763 45778
Q ss_pred EEEeccCCCCCCccccccCCCCCChHH-----------HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHH
Q 043646 416 SFLVYSTTNSSPENMKIERNKPLHGPF-----------VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAI 484 (625)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~l~~~~-----------v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~ 484 (625)
+|...+... ++. .+..+ +.+.|.+ .|+...+ . .. +.+
T Consensus 435 ~f~~~p~~~---------~~~-~~~~~~~~~l~~~~~~l~~~l~~-~G~~~~~------~-~~-~~~------------- 482 (515)
T 2jis_A 435 CFWFVPPSL---------RGK-QESPDYHERLSKVAPVLKERMVK-EGSMMIG------Y-QP-HGT------------- 482 (515)
T ss_dssp EEEECCGGG---------TTC-TTSTTHHHHHHTHHHHHHHHHHH-HTSCEEE------E-EE-ETT-------------
T ss_pred EEEEeCccc---------ccc-ccchhHHHHHHHHHHHHHHHHHh-cCCEEEE------E-EE-ECC-------------
Confidence 887754210 000 00112 3344433 3433211 0 00 000
Q ss_pred HhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Q 043646 485 QKGYLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 485 ~~g~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|+++ ++++|++|+++++++|++++++
T Consensus 483 -------~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 483 -------RGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp -------EEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred -------ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 137899999 8999999999999999988654
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=291.62 Aligned_cols=330 Identities=15% Similarity=0.124 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEE-EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch--
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAII-FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-- 193 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vi-ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-- 193 (625)
....+..+++++++++++|.+++ .++ ++ +|+++++..++.++ +++||+ |+++.+.|++
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~-~~~~~~-~s~t~al~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~ 100 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNR-WAYPID-GTSRAGIEAVLASV---------------IEPEDD--VLIPIYGRFGYL 100 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCS-EEEEEE-SCHHHHHHHHHHHH---------------CCTTCE--EEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC-cEEEec-CcHHHHHHHHHHHh---------------cCCCCE--EEEecCCcccHH
Confidence 44577889999999999999866 454 77 56667788777766 578886 8888889988
Q ss_pred hHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc
Q 043646 194 NLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~ 273 (625)
.....+..|++++.++++.++.+|+++|++++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 176 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKK----VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVAT 176 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh----CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 4445677899999999998889999999999984 378999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc-cCCCC------------CcccCCceEEeecccccc
Q 043646 274 GPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ-LGSSP------------PSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 274 ~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~-l~~~~------------p~~~ggg~v~~~~~~~~~ 340 (625)
.+..++++..+ ++|++++|+||++++|.|+|++++++++.. +...+ +...||..+. .+..+
T Consensus 177 ~~~~~~~~~~~---~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~---~~~~~ 250 (416)
T 3isl_A 177 IGGCEVKVDEW---KIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPIT---SNYFD 250 (416)
T ss_dssp TTTSCCCTTTT---TCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCS---CSTTC
T ss_pred ccCCCcchhhc---CCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCC---ccccc
Confidence 99888888766 789999999999888989999999988732 11111 1122222110 00000
Q ss_pred ccccccc-hhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEE
Q 043646 341 DTLYLED-IEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSF 417 (625)
Q Consensus 341 ~~~~~~~-~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f 417 (625)
...+... ...++..++++...... +++... +..|.+.+.++.+.+++++.+.|.++ +++++.+.......++.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 327 (416)
T 3isl_A 251 LSQLEDYWSERRLNHHTEATTMLYALREGVRLV--LEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCV 327 (416)
T ss_dssp HHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEE
T ss_pred hHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEE
Confidence 0000000 13345677877766543 344443 45578899999999999999999885 888776642222345555
Q ss_pred EeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 418 LVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.+..+ .+..++.+.|.+++||.+++|.... .++++|
T Consensus 328 ~~~~~---------------~~~~~l~~~L~~~~gi~v~~g~~~~-----------------------------~~~~iR 363 (416)
T 3isl_A 328 EIPGG---------------IDGESVRDMLLAQFGIEIASSFGPL-----------------------------AGKIWR 363 (416)
T ss_dssp ECCTT---------------CCHHHHHHHHHHHHCEECBCCCSTT-----------------------------TTTEEE
T ss_pred eCCCC---------------CCHHHHHHHHHHhCCEEEecCCCCC-----------------------------CCCEEE
Confidence 54321 3467899999776799999775321 248999
Q ss_pred EecCCCCCHHH-HHHHHHHHHHHHHh
Q 043646 498 ITFPYYMSNEE-FEFILAALEFIAAY 522 (625)
Q Consensus 498 is~~~~~t~ed-id~ll~aL~~~~~~ 522 (625)
|+++.+++++| +++++++|++++.+
T Consensus 364 i~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 364 IGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp EECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCcHHHHHHHHHHHHHHHHH
Confidence 99977777777 99999999998876
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=291.89 Aligned_cols=409 Identities=14% Similarity=0.087 Sum_probs=266.5
Q ss_pred CCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHH
Q 043646 46 PHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVH 124 (625)
Q Consensus 46 ~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~ 124 (625)
|+. .+.++.++++++.+......+.+ ..|||+.++++.++.+++++..... |++...+..+....++.+
T Consensus 74 p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~yl~~~~~~~~~~~v~~~~~~~~~----n~~~~~~~~~~~~~~le~ 143 (497)
T 2qma_A 74 DNKNAPLKSVIDDVAELVAKNAIFTQH------PDCIAHLHTPPLMPAVAAEAMIAAL----NQSMDSWDQASSATYVEQ 143 (497)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTSCCTTS------TTBCSSSCCCCBHHHHHHHHHHHHH----CCCTTCGGGCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCC------CCeeEeCCCCCcHHHHHHHHHHHhh----cccccchhhChHHHHHHH
Confidence 444 78899999999877554333333 2599999999999999998876653 333333445567788889
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhh-hhccCC-CCceEEEEcCCCCchhHHHHHHcC
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKL-ITSLRD-EERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~-~~~l~~-gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
++++++++++|.++.+.++||++|+.+++..+..+............+ ..++.+ .++.+|+++..+|+++..+++..|
T Consensus 144 ~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g 223 (497)
T 2qma_A 144 KVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMG 223 (497)
T ss_dssp HHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcC
Confidence 999999999999763489999555555443333321000000000000 001111 022369999999999999998887
Q ss_pred C---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 203 A---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 203 ~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
. +++.||++.++.+|+++|+++|++....+ ++.+|++++++|+||.+.|+++|+++|++||+|+|+|+|++.+..+
T Consensus 224 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~ 303 (497)
T 2qma_A 224 LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALIL 303 (497)
T ss_dssp SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHh
Confidence 6 89999998889999999999998532211 2458999999999999999999999999999999999999987765
Q ss_pred ccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 279 INLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 279 id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
.+++.. +.+++|++++|+|||+++|.++|+++++++.. +..+ ...... ..........+. ..... ++
T Consensus 304 ~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~-~~~~---~~~~~y---l~~~~~~~~~~~---~~~~~-~~ 372 (497)
T 2qma_A 304 SSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSN-FKFL---LHHADY---LNREHDELPNLV---DKSIA-TT 372 (497)
T ss_dssp STTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGG-GGGG---CC--------------------------C-CS
T ss_pred CcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHH-HHHh---cCCchh---cCCccccCCCcc---ccCCC-CC
Confidence 552211 12367999999999999999999999987652 1111 111000 000000000000 00000 11
Q ss_pred hhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 357 PQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 357 ~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
..+.++ +.+++..+ ...|++.+.++...+++++.+.|+++++++++.+. +.++++|...+..
T Consensus 373 r~~~al~~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~~v~f~~~~~~------------ 435 (497)
T 2qma_A 373 KRFDALKVFMTMQNV--GPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP---SLSTVLFRATHET------------ 435 (497)
T ss_dssp CCCTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC---SSSEEEEEECCSS------------
T ss_pred CchhHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC---CceEEEEEEcCCc------------
Confidence 000011 11223322 34466788888999999999999999999997653 5678888875421
Q ss_pred CCCC--hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEec-CCCCCHHHHHHH
Q 043646 436 KPLH--GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITF-PYYMSNEEFEFI 512 (625)
Q Consensus 436 ~~l~--~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~-~~~~t~edid~l 512 (625)
...+ ...+.+.|.+ .|+.+.++.... ..+++||++ ++++|++|++++
T Consensus 436 ~~~~~l~~~l~~~l~~-~G~~~~~~~~~~-----------------------------g~~~lRis~~~~~~t~edi~~~ 485 (497)
T 2qma_A 436 ADLDELNKALRLEALT-RGIAVLGETIVD-----------------------------GKTALKFTILNPCLTTSDFESL 485 (497)
T ss_dssp SCHHHHHHHHHHHHHH-HTSCBCEEEEET-----------------------------TEEEEEEECCCTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh-CCCEEEEeeEEC-----------------------------CEEEEEEEecCCCCCHHHHHHH
Confidence 0000 1245555644 476664321110 137899998 899999999999
Q ss_pred HHHHHHHHHh
Q 043646 513 LAALEFIAAY 522 (625)
Q Consensus 513 l~aL~~~~~~ 522 (625)
+++|++++.+
T Consensus 486 ~~~l~~~~~~ 495 (497)
T 2qma_A 486 LSKINMLAVE 495 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=291.94 Aligned_cols=417 Identities=8% Similarity=0.041 Sum_probs=274.8
Q ss_pred cccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchH-HHHHHHHHhhCCCCCCCCC
Q 043646 33 RQTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLR-YIEDYIINNVLPFYGNTHT 110 (625)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~-~v~ea~~~~l~~~~~n~~~ 110 (625)
.+.++..+++..+|+. .+.++.++++++.+......+.+| + |+.+-.++..++ .+.+.+...+ |+..
T Consensus 34 ~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p---~---~~~~~~~~~~~~~~~~~~l~~~~-----n~~~ 102 (475)
T 3k40_A 34 KPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSP---K---FHAYFPTANSYPAIVADMLSGAI-----ACIG 102 (475)
T ss_dssp CTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCT---T---BCCSSCCCCCHHHHHHHHHHHHH-----CCCS
T ss_pred CHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCc---C---ceeeCCCCCcHHHHHHHHHHHHh-----Cccc
Confidence 3455666777777766 888999999999875544445554 4 444433343333 4444444444 3333
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccccchhhhh---h-hhccCC
Q 043646 111 SDSYVGQRMTKMVHEASNYIKRCLGGGQA--------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDK---L-ITSLRD 178 (625)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~---~-~~~l~~ 178 (625)
..+..++..+++.+++.+++++++|.+.+ ...+||++||.+++..+..++....+. .+.. + ..++.+
T Consensus 103 ~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~-~~~~~~~~~~~~~~~ 181 (475)
T 3k40_A 103 FTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE-VKELHPEWDEHTILG 181 (475)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH-HHHHCTTSCHHHHHH
T ss_pred cCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH-hhccCcccccccccC
Confidence 34556788899999999999999999753 157888788888777776654211000 0000 0 000112
Q ss_pred CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHH
Q 043646 179 EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIAR 257 (625)
Q Consensus 179 gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~ 257 (625)
+.+|+++..+|+|+..+++..|++++.||+++++ +|+++|+++|++..... .|++|++++++|+||.+.|+++|++
T Consensus 182 --~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~ 258 (475)
T 3k40_A 182 --KLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGP 258 (475)
T ss_dssp --HEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred --CeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHH
Confidence 2469999999999999999999999999999889 99999999998643222 3788999999999999999999999
Q ss_pred HHHHcCCEEEEeccCcCCCccc-cCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceEE
Q 043646 258 LLHQYGGFACFDFAASGPYVKI-NLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTVN 332 (625)
Q Consensus 258 la~~~g~~vivD~A~~~g~~~i-d~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v~ 332 (625)
+|++||+|+|+|+|++.+.... ..+.. +.+.+|++++++|||+++|.|+|++++++.....+.+ .+.+.......
T Consensus 259 la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 338 (475)
T 3k40_A 259 VGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQG 338 (475)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------
T ss_pred HHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCC
Confidence 9999999999999998764322 11111 1135699999999999999999999998764210111 11111110000
Q ss_pred eeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCc
Q 043646 333 YVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQ 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~ 412 (625)
...+......+.+.+.-...+.+++..+ ...|++.+.++.+++++++.+.|+++|+++++.+. ..
T Consensus 339 ----------~~~~~~~~~~~~sr~~~~l~l~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~---~~ 403 (475)
T 3k40_A 339 ----------SAPDYRHWQIPLGRRFRALKLWFVLRLY--GVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEI---NM 403 (475)
T ss_dssp --------------------CCCGGGTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCC---BT
T ss_pred ----------CCCCcccccccCCCcccHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---ce
Confidence 0000001112223221111123344443 45678889999999999999999999999998764 57
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
++++|.+.+.. ....++.+.|+++..+.+.++... .
T Consensus 404 ~iv~f~~~~~~--------------~~~~~l~~~L~~~g~~~~~~~~~~------------------------------g 439 (475)
T 3k40_A 404 GLVCFRLKGSN--------------ERNEALLKRINGRGHIHLVPAKIK------------------------------D 439 (475)
T ss_dssp TEEEEEESSCH--------------HHHHHHHHHHHHHTSCBCEEEEET------------------------------T
T ss_pred EEEEEEeCCch--------------HHHHHHHHHHHhCCcEEEEeeEEC------------------------------C
Confidence 88888875321 113577888876533333322111 1
Q ss_pred CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFP-YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~-~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++|+++. +.+|++||++++++|++++++.
T Consensus 440 ~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 440 VYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 378999985 6679999999999999987653
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=286.82 Aligned_cols=426 Identities=13% Similarity=0.109 Sum_probs=272.1
Q ss_pred ccccccc---cCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHH-HHHHhhCCCCCCC
Q 043646 34 QTCSEFK---NDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIED-YIINNVLPFYGNT 108 (625)
Q Consensus 34 ~~~~~~~---~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~e-a~~~~l~~~~~n~ 108 (625)
+.++..+ +...+|.. .+.++.++.+++.+... ..+.+ ..|+++..++..|..+.. .+...+ |+
T Consensus 52 p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~------p~~~~~~~~~~~~~~~~~~~l~~~~-----n~ 119 (504)
T 2okj_A 52 PHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYG-VRTGH------PRFFNQLSTGLDIIGLAGEWLTSTA-----NT 119 (504)
T ss_dssp HHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTS-CCTTC------TTEESSSSCCCCHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhcc-CCCCC------CCEEEEccCCCCHHHHHHHHHHHhh-----cc
Confidence 3444454 56666644 78889999998766433 21222 238888888887776654 333322 44
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC----CceE
Q 043646 109 HTSDSYVGQRMTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE----ERWV 183 (625)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g----d~~~ 183 (625)
+...+..+.....+.+++++++++++|.+. .+.++||++||.+++..+..+.....+. + ..+| ++.+
T Consensus 120 ~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~-----~---~~~G~~~~~~~~ 191 (504)
T 2okj_A 120 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPE-----V---KTKGMAAVPKLV 191 (504)
T ss_dssp BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTT-----H---HHHCGGGSCCEE
T ss_pred CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhH-----H---hhcCccccCCeE
Confidence 433455566778888999999999999973 2379999555555444333322110000 0 0123 2336
Q ss_pred EEEcCCCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHH
Q 043646 184 VFLGPYEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLL 259 (625)
Q Consensus 184 Vlv~~~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la 259 (625)
|+++..+|+++..+++..|. +++.||++.++.+|+++|+++|+++...+ +|++|++++++|+||.+.|+++|+++|
T Consensus 192 v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la 271 (504)
T 2okj_A 192 LFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADIC 271 (504)
T ss_dssp EEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHH
T ss_pred EEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 99999999999999988776 89999998889999999999998533222 589999999999999999999999999
Q ss_pred HHcCCEEEEeccCcCCCcc-----ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecc-ccc--cCCCCCcccCCceE
Q 043646 260 HQYGGFACFDFAASGPYVK-----INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKA-LYQ--LGSSPPSTCGGGTV 331 (625)
Q Consensus 260 ~~~g~~vivD~A~~~g~~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~--l~~~~p~~~ggg~v 331 (625)
++||+|+|+|+|++.+... ..+.. ..++|++++++|||+++|.++|+++++++ +.. +....++..+++..
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g--~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~ 349 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNG--IERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQ 349 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTT--GGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCS
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCC--cccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccc
Confidence 9999999999998877643 22221 13689999999999999999999999874 421 11233444333320
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
+...++ ...+ .++.....++..+. +++..+ ...|++.+.++...+++++.+.|.++|+++++.+. ...
T Consensus 350 -~~~~~~--~~~~--~~~~~rr~~~l~~~----a~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~p~ 417 (504)
T 2okj_A 350 -YDVSYD--TGDK--AIQCGRHVDIFKFW----LMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG-EPE 417 (504)
T ss_dssp -SCGGGC--CGGG--SSCSSCBCCHHHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSS-CCS
T ss_pred -ccCcCC--cccC--CCCCCCCccHHHHH----HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC-CCC
Confidence 000000 0000 00111111222221 223332 34567888889999999999999999999998732 136
Q ss_pred cceEEEEeccCCCCCCc-cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 412 QAILSFLVYSTTNSSPE-NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
.++++|...+....... .........-....+.+.|.+ .|+.+.++..+. +
T Consensus 418 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~~~~--------~------------------- 469 (504)
T 2okj_A 418 HTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQPQG--------D------------------- 469 (504)
T ss_dssp SSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEEEET--------T-------------------
T ss_pred eEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEeeEEC--------C-------------------
Confidence 78888887542100000 000000000002457777765 475332211110 0
Q ss_pred CCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHh
Q 043646 491 VKPGWTRITFP-YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 491 ~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|++++ +++|++|+++++++|++++++
T Consensus 470 -~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 470 -KANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp -EEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred -ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999996 999999999999999988765
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=284.31 Aligned_cols=399 Identities=11% Similarity=0.021 Sum_probs=267.5
Q ss_pred cccccCCCCC-CCCChHHHHHHHHHhhc-CCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcch
Q 043646 37 SEFKNDHHPP-HSKPSEEKLAWLRSQII-GNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSY 114 (625)
Q Consensus 37 ~~~~~~~~~~-~~~~~~~~~~~lr~~~~-~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~ 114 (625)
...+++..+| ...+.++.++.+++.+. .....+++| .|+. ++.++.+.+++.+.+.....+ +.
T Consensus 10 ~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~------~f~~----~~~~~~v~e~~~~a~~~~~~~-----~~ 74 (452)
T 2dgk_A 10 STIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLA------TFCQ----TWDDENVHKLMDLSINKNWID-----KE 74 (452)
T ss_dssp -----CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCS------CCSC----CCCCHHHHHHHHHTTTCBTTC-----TT
T ss_pred hhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCC------CeeC----CCchHHHHHHHHHHhccCCCC-----hh
Confidence 3445556666 44888899999998773 222223332 1221 345567888887776432222 22
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCC----cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC---CceEEEEc
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQAD----AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE---ERWVVFLG 187 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~----~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g---d~~~Vlv~ 187 (625)
.++...++.+++++++++++|.+.+. .+++| +|+++++..++.++... ++.+. ..+| ++++|+++
T Consensus 75 ~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t-~ggtea~~~al~a~~~~----~~~~~---~~~G~~~~~~~vi~~ 146 (452)
T 2dgk_A 75 EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNT-IGSSEACMLGGMAMKWR----WRKRM---EAAGKPTDKPNLVCG 146 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEE-SSHHHHHHHHHHHHHHH----HHHHH---HHTTCCCSCCEEEES
T ss_pred hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEe-CCHHHHHHHHHHHHHHH----HHHHH---HhcCCCCCCcEEEEC
Confidence 34667889999999999999998652 38888 45555555554443100 00000 0133 33369999
Q ss_pred CCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc----
Q 043646 188 PYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY---- 262 (625)
Q Consensus 188 ~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~---- 262 (625)
. .|.++...++..|++++.||+++ ++.+|+++|+++|+ ++|++|++++++|+||.+.|+++|+++|+++
T Consensus 147 ~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~ 220 (452)
T 2dgk_A 147 P-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACD-----ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADT 220 (452)
T ss_dssp S-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCC-----TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHh-----hCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhcc
Confidence 9 99999999999999999999987 78999999999997 5789999999999999999999999999996
Q ss_pred --CCEEEEeccCcCCCcc-------ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC--CCcccCCceE
Q 043646 263 --GGFACFDFAASGPYVK-------INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS--PPSTCGGGTV 331 (625)
Q Consensus 263 --g~~vivD~A~~~g~~~-------id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~--~p~~~ggg~v 331 (625)
|+|+|+|+|++.+..+ .++. ..++|++++++|||+++|.++|+++++++....+.+ .+.+.++...
T Consensus 221 ~~~~~l~vD~a~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
T 2dgk_A 221 GIDIDMHIDAASGGFLAPFVAPDIVWDFR---LPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIG 297 (452)
T ss_dssp CCCCCEEEECTTGGGTHHHHCTTCCCSTT---STTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEE
T ss_pred CCCCcEEEEcccHHHHHHhhCccchhhcC---CCCCcEEEECcccccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCC
Confidence 9999999998875432 2332 247999999999999889999999997652100111 1222222110
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC-
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS- 408 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~- 408 (625)
.+ ...++.+....+ .+++..+ ...|++.+.++...+++++.+.|.++++++++.+..
T Consensus 298 ~~------------------~~~~~r~~~~~~~~~aal~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 357 (452)
T 2dgk_A 298 TF------------------AINFSRPAGQVIAQYYEFLRL--GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRP 357 (452)
T ss_dssp EC------------------CSCCSCBCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCT
T ss_pred Cc------------------ccCCCChhHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCC
Confidence 00 011232221111 2333333 345677888899999999999999998899886421
Q ss_pred CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 409 VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 409 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
....++++|.+.+.. ...++..++.+.|.+ .||.++...... . +.
T Consensus 358 ~~~~~~v~f~~~~~~-----------~~~~~~~~l~~~L~~-~Gi~v~~~~~~~---~---~~----------------- 402 (452)
T 2dgk_A 358 DEGIPAVCFKLKDGE-----------DPGYTLYDLSERLRL-RGWQVPAFTLGG---E---AT----------------- 402 (452)
T ss_dssp TTBSSEEEEEECTTC-----------CCSCCHHHHHHHHHH-TTCBCCEEECST---T---CT-----------------
T ss_pred CCCeEEEEEEecCcc-----------cccCCHHHHHHHHHh-cCCeeeeeeCCc---c---cC-----------------
Confidence 136688888774321 012345689999965 699876422111 0 00
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
..+++||+++.++|++|+++++++|++++....+
T Consensus 403 ---~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 403 ---DIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp ---TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1478999999999999999999999998876544
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=280.48 Aligned_cols=344 Identities=13% Similarity=0.062 Sum_probs=251.2
Q ss_pred ccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHH
Q 043646 81 ADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 81 ld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~sGttaal~~l~~~ 159 (625)
+.+++..+.|+.|.+++.+.+.. + .++...+...++++++++++|.+ +.+++++| +|+++++..++.+
T Consensus 3 ~~~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t-~g~t~a~~~~~~~ 71 (353)
T 2yrr_A 3 LLTPGPTPIPERVQKALLRPMRG-----H-----LDPEVLRVNRAIQERLAALFDPGEGALVAALA-GSGSLGMEAGLAN 71 (353)
T ss_dssp ECSSSSCCCCHHHHGGGGSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEES-SCHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEc-CCcHHHHHHHHHH
Confidence 44555677888888888665532 2 23445677899999999999986 23378998 7888888888776
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ ++ |+ |+++..+|+++ ....+..|++++.++.++++.+|+++|++++++ .++++|
T Consensus 72 ~---------------~~--d~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~~v 128 (353)
T 2yrr_A 72 L---------------DR--GP--VLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR----RRYRMV 128 (353)
T ss_dssp C---------------SC--CC--EEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH----SCCSEE
T ss_pred h---------------cC--Cc--EEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh----CCCCEE
Confidence 5 23 54 88888888885 233456799999999988888999999999983 278999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++++.
T Consensus 129 ~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~~- 204 (353)
T 2yrr_A 129 ALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAM---GVDYAFTGSQKCLSAPPGLAPIAASLEAR- 204 (353)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEECCTTSTTCCCSSCEEEEECHHHH-
T ss_pred EEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccccccc---CceEEEecCcccccCCCceEEEEECHHHH-
Confidence 99999999999999999999999999999999999888776666554 67999999999988888899999999873
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
+.+.. ..+. ..+...+..........++++..... .++++.+ +..|.+.+.++.+++++++.+.|
T Consensus 205 -~~l~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L 271 (353)
T 2yrr_A 205 -KAFTG-KRGW---------YLDLARVAEHWERGGYHHTTPVLLHYALLEALDLV--LEEGVAARERRAREVYAWVLEEL 271 (353)
T ss_dssp -HHCCC-CSCS---------TTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhcc-CCCc---------cccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 22321 0000 00000000000122345666666543 3445544 34578888999999999999999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
+++ +++++.+. .....++.|.+.. +++..++.+.|.+ .||.+++|..|.
T Consensus 272 ~~~-g~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~l~~-~gi~v~~g~~~~------------- 320 (353)
T 2yrr_A 272 KAR-GFRPYPKA-SPLPTVLVVRPPE---------------GVDADRLVRALYA-EGVAVAGGIGPT------------- 320 (353)
T ss_dssp HHT-TCEESCSS-SBCTTEEEEECCT---------------TCCHHHHHHHHHH-TTEECEECCGGG-------------
T ss_pred HHC-CCccccCc-cCCCeEEEEECCC---------------CCCHHHHHHHHHH-CCEEEeCCcccc-------------
Confidence 887 88887642 1123344454421 2346788988866 599999887542
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH-HHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE-FILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid-~ll~aL~~~~~~ 522 (625)
.++++||+++.+++++|++ +++++|++++.+
T Consensus 321 ----------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 321 ----------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp ----------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred ----------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 2478999998888999999 999999988754
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-31 Score=279.65 Aligned_cols=350 Identities=11% Similarity=0.042 Sum_probs=249.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
.|+-+.+..+.|+.|.+++.+.+.. + .+....+..+++++++++++|++.+.+++|..+|+++++..++.
T Consensus 20 ~~~~~pgp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~ 89 (376)
T 3f0h_A 20 MLNFTVGPVMSSEEVRAIGAEQVPY-----F-----RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM 89 (376)
T ss_dssp CEECSSSSCCCCHHHHHHHTSCCCC-----C-----SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred ceeecCCCCCCcHHHHHHhcCCCCC-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence 3444555677788999988665421 1 12345678899999999999997644566633677778888887
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH--HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
++ +++||+ |+++...+++.. ......|++++.++.+.++.+|+++|+++++ +++++
T Consensus 90 ~~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-----~~~~~ 147 (376)
T 3f0h_A 90 NC---------------FTKKDK--VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN-----QNFTG 147 (376)
T ss_dssp HH---------------CCTTCC--EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT-----SCCCE
T ss_pred hc---------------cCCCCe--EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc-----cCceE
Confidence 76 578887 666655444433 2345579999999998888899999998775 68999
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
|++++++|+||.+.|+++|+++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++++.
T Consensus 148 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~~ 224 (376)
T 3f0h_A 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC---GADVMITGSQKVLACPPGISVIVLAPRGV 224 (376)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEETTTTTCCCSSCEEEEECHHHH
T ss_pred EEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc---CccEEEecCcccccCCCceEEEEECHHHH
Confidence 999999999999999999999999999999999999998887777655 78999999999999888899999998873
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYI-GYEVIKKQEDVYIESALG 393 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~-g~~~i~~~~~~l~~~l~~ 393 (625)
. .+.+....+.. .+...+...........+++...+ +.++++++ +.. +.+.+.++.+.+++++.+
T Consensus 225 ~--~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~ 292 (376)
T 3f0h_A 225 E--RVEKSKVRTMY--------FDLKDALKNQERGQTPFTPAVGILLQINERLKEI--KKHGGADAEVARIASQAADFRA 292 (376)
T ss_dssp H--HHHTCCCCCST--------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHH
T ss_pred H--HhhcCCCCcee--------ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHH
Confidence 2 22111111100 000001111111112334555332 23445554 344 578899999999999999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|.++ ++++..+. ....++.+.. + +.+..++.+.|.+++||.+++|....
T Consensus 293 ~L~~~-~~~~~~~~--~~~~~~~~~~-~---------------~~~~~~l~~~l~~~~gi~v~~g~~~~----------- 342 (376)
T 3f0h_A 293 KIKDL-PFELVSES--PANGVTSVHP-T---------------TANAYDIFLKLKDEYGIWICPNGGEM----------- 342 (376)
T ss_dssp HTTTS-SEEECCSS--BBTTEEEEEE-S---------------SSCHHHHHHHHHHHSSEECEECCGGG-----------
T ss_pred HHHHc-CCccCccc--cCceEEEEeC-C---------------CCCHHHHHHHHHHhCCEEEecCcccc-----------
Confidence 99987 67776542 1233433332 2 13467899999776699999773110
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||+++.++|++|+++++++|++++.+.
T Consensus 343 ------------------~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 343 ------------------KDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp ------------------TTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred ------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 24889999999999999999999999988653
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-30 Score=275.21 Aligned_cols=370 Identities=14% Similarity=0.027 Sum_probs=261.7
Q ss_pred CCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHH
Q 043646 48 SKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEAS 127 (625)
Q Consensus 48 ~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~ 127 (625)
..+.++.++.+++..... ..+. ...|+.++.. ++++.+.+++.+.+...+.++.. .....++.++++
T Consensus 9 ~~~~~~~~~~l~~~~~~~-~~~~------~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~l~ 75 (397)
T 3f9t_A 9 GVSEKEILEELKKYRSLD-LKYE------DGNIFGSMCS-NVLPITRKIVDIFLETNLGDPGL-----FKGTKLLEEKAV 75 (397)
T ss_dssp CCCHHHHHHHHHHHHTTS-CCGG------GTCBCSCSCC-CCCTHHHHHHHHHTTCCTTSGGG-----BHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccC-CCCC------CCCeEEEecC-CCcHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHHHH
Confidence 367788889998866432 2122 1247888754 45568899998888655555432 135678889999
Q ss_pred HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhc--cCCCCceEEEEcCCCCchhHHHHHHcCCeE
Q 043646 128 NYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITS--LRDEERWVVFLGPYEHHSNLLSWRQSLAEV 205 (625)
Q Consensus 128 ~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~--l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~v 205 (625)
+++++++|++++ +|++| +|+++++..++.++.... +..-..+ -.+|| .|+++.++|+++...++..|+++
T Consensus 76 ~~la~~~~~~~~-~i~~~-~ggt~a~~~~~~~~~~~~----~~~~~~~~~~~~gd--~vl~~~~~~~~~~~~~~~~g~~~ 147 (397)
T 3f9t_A 76 ALLGSLLNNKDA-YGHIV-SGGTEANLMALRCIKNIW----REKRRKGLSKNEHP--KIIVPITAHFSFEKGREMMDLEY 147 (397)
T ss_dssp HHHHHHTTCTTC-EEEEE-SCHHHHHHHHHHHHHHHH----HHHHHTTCCCCSSC--EEEEETTCCTHHHHHHHHHTCEE
T ss_pred HHHHHHhCCCCC-CEEEe-cCcHHHHHHHHHHHHHHH----HhhhhhcccCCCCe--EEEECCcchhHHHHHHHHcCcee
Confidence 999999999876 88998 566666777666652100 0000000 12356 49999999999998999999999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC----
Q 043646 206 VEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL---- 281 (625)
Q Consensus 206 v~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~---- 281 (625)
+.+|.++++.+|+++|++++++ .++++|++++++|+||.+.|+++|.++|++||+++|+|++++.+..+..-
T Consensus 148 ~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 148 IYAPIKEDYTIDEKFVKDAVED----YDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp EEECBCTTSSBCHHHHHHHHHH----SCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred EEEeeCCCCcCCHHHHHHHHhh----cCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence 9999998899999999999983 27999999999999999999999999999999999999998865432211
Q ss_pred -------CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC---CCcccCCceEEeeccccccccccccchhhh
Q 043646 282 -------RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS---PPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 282 -------~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~---~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
-.... ++|++++|+||++++|.++|+++++++.. .+.+ .+...++.. .
T Consensus 224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~--------------------~ 281 (397)
T 3f9t_A 224 KKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGY-KRYLDVDAPYLTETRQ--------------------A 281 (397)
T ss_dssp CTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGG-GGGTCEECTTSSSSEE--------------------C
T ss_pred cccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHH-HHhhccCCccccCCCc--------------------c
Confidence 01122 67999999999998888899999987652 1222 222222111 0
Q ss_pred hcCCChhHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcc
Q 043646 352 ENGGTPQIVQ--MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPEN 429 (625)
Q Consensus 352 ~~~gt~~~~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~ 429 (625)
...|+++... ...++++++ ...+.+.+.++.+++++++.+.|.++ +++++.+. ..+++.|....
T Consensus 282 ~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~-------- 347 (397)
T 3f9t_A 282 TILGTRVGFGGACTYAVLRYL--GREGQRKIVNECMENTLYLYKKLKEN-NFKPVIEP---ILNIVAIEDED-------- 347 (397)
T ss_dssp SSCSSCCSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCC---SSSEEEEECTT--------
T ss_pred ccccccccchHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCC---CccEEEEEeCC--------
Confidence 1123322111 123334443 34556778888889999999999888 77766542 45565554321
Q ss_pred ccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 430 ~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
..++.+.|.+ +||.+++|.. ++++||+++.+++++|+
T Consensus 348 ----------~~~~~~~l~~-~gi~v~~~~~--------------------------------~~~~Ri~~~~~~~~e~i 384 (397)
T 3f9t_A 348 ----------YKEVCKKLRD-RGIYVSVCNC--------------------------------VKALRIVVMPHIKREHI 384 (397)
T ss_dssp ----------HHHHHHHHHH-TTCBCEECSS--------------------------------SSEEEEECCTTCCHHHH
T ss_pred ----------HHHHHHHHHh-CCeEEeccCC--------------------------------CCEEEEEEcCCCCHHHH
Confidence 4578888866 5999986531 38899999999999999
Q ss_pred HHHHHHHHHHHH
Q 043646 510 EFILAALEFIAA 521 (625)
Q Consensus 510 d~ll~aL~~~~~ 521 (625)
++++++|++++.
T Consensus 385 ~~~~~~l~~~l~ 396 (397)
T 3f9t_A 385 DNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-31 Score=284.14 Aligned_cols=352 Identities=15% Similarity=0.122 Sum_probs=252.9
Q ss_pred CceEeccC-CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHH-HHHHhCCCCCCcEEEeCChHHHHH
Q 043646 76 RRLTYADH-TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNY-IKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 76 ~~~~Yld~-~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~-ia~~~g~~~~~~vift~sGttaal 153 (625)
+..+|||+ .+.++.++.+.+++.+.+.....+.....+..+........+++++ +++++|.+ +|+|| +|+++++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~-~g~t~a~ 82 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVT-NGAREAK 82 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEE-SSHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEe-CChHHHH
Confidence 46899999 5578889999999988775321100100112233445667889999 99999986 68898 7888888
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEe--cCCCCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIG--LDDNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~--~~~~~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.++|+++...++..|++++.++ .++++.+|+++|++++++....
T Consensus 83 ~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (371)
T 2e7j_A 83 FAVMHSL---------------AKKDAW--VVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR 145 (371)
T ss_dssp HHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHH---------------hCCCCE--EEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc
Confidence 8888876 467875 99999999999988998999999999 8777889999999999843211
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.++|++++
T Consensus 146 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~~~G~~~~ 222 (371)
T 2e7j_A 146 GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGM 222 (371)
T ss_dssp SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEE
T ss_pred CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhc---CCCEEEecCCcCCCCCCCcEEEEE
Confidence 47899999999999999999999999999999999999999988776665554 689999999999988888999999
Q ss_pred eccccccCC-CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHH--HH
Q 043646 312 SKALYQLGS-SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQE--DV 386 (625)
Q Consensus 312 ~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~--~~ 386 (625)
++++ .+. +.+...++.. ...++.++++..+.. .++++++ +. .+.++. ++
T Consensus 223 ~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~~l~~~--~~----~~~~~~~~~~ 276 (371)
T 2e7j_A 223 KEEW--AEIVLRRSEKYKNK------------------EVELLGCTARGATIITLMASFPHV--RE----RIKRWDEEVE 276 (371)
T ss_dssp CTTT--TTTTTCBCSSCTTS------------------BGGGTTCCCCSHHHHHHHHHHHHH--HH----HGGGHHHHHH
T ss_pred echh--hhhhccccccCccc------------------ccccccCCcCHHHHHHHHHHHHHH--HH----HHHHHHHHHH
Confidence 9887 344 4433321111 112335666655443 3444443 21 556677 78
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.++ +++++.+.. .+.+++.+.+. +..++.+.|. ++||.+++ ..
T Consensus 277 ~~~~l~~~L~~~-~~~~~~~~~-~~~~~~~~~~~------------------~~~~~~~~l~-~~gi~~~~-~~------ 328 (371)
T 2e7j_A 277 KARRFAAEMEKL-GIKQLGDNP-HNHDLMFFHAE------------------VLYEISKKAK-GGRFFLYR-EL------ 328 (371)
T ss_dssp HHHHHHHHHHHT-TCEEESSSS-CCSSEEEEECH------------------HHHHHHHHSS-SGGGHHHH-HH------
T ss_pred HHHHHHHHHHHc-CcEEecCCC-ccCceEEEECC------------------CHHHHHHHHH-HCCEEEEe-cc------
Confidence 889999999887 888886531 13555555442 1457888886 57998874 11
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEE-EecCCC-CCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR-ITFPYY-MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR-is~~~~-~t~edid~ll~aL~~~~~~ 522 (625)
.... ..|..++++| |+++.+ ++++|+++++++|++++++
T Consensus 329 -~~~~----------------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 329 -KSRK----------------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp -HHTT----------------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred -cccc----------------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 0000 0011258899 999988 9999999999999988764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-30 Score=284.46 Aligned_cols=418 Identities=10% Similarity=0.022 Sum_probs=276.1
Q ss_pred cccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCC
Q 043646 33 RQTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHT 110 (625)
Q Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~ 110 (625)
.+..+..+++..+|.. .+.++.++++++.+......+.+| + |+.+-.++ ..|..+.+.+...+ |...
T Consensus 39 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p---~---~~~~~~~~~~~~~~~~~~~~~~~-----n~~~ 107 (481)
T 4e1o_A 39 QPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSP---H---MHAYYPALTSWPSLLGDMLADAI-----NCLG 107 (481)
T ss_dssp CTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTST---T---BCSSSCCCCCHHHHHHHHHHHHH-----CCCC
T ss_pred CHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCC---C---eeEeCCCCCCHHHHHHHHHHHHh-----Cccc
Confidence 3455666676666666 888999999999875444445554 3 44443333 33444555555555 2222
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhCCCCC---------CcEEEeCChHHHHHHHHHHHhcccccchhhh--hh-hhccCC
Q 043646 111 SDSYVGQRMTKMVHEASNYIKRCLGGGQA---------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRD--KL-ITSLRD 178 (625)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~ia~~~g~~~~---------~~vift~sGttaal~~l~~~l~~~~~~~~~~--~~-~~~l~~ 178 (625)
..+..++..+++.+++.+++++++|.+.. ...+||++||.+++..+..++....+..... .+ ..++.+
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 34556788899999999999999998753 1468887788887777766543110000000 00 001123
Q ss_pred CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccCHHHHHH
Q 043646 179 EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSDTRSIAR 257 (625)
Q Consensus 179 gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~l~~I~~ 257 (625)
+ .+|+++..+|+|+.++++..|++++.||++.++.+|+++|+++|+++... ..|++|++++++|+||.+.|+++|++
T Consensus 188 ~--~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~ 265 (481)
T 4e1o_A 188 R--LVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265 (481)
T ss_dssp T--EEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred C--eEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHH
Confidence 3 46999999999999999888999999999888999999999999864322 23788999999999999999999999
Q ss_pred HHHHcCCEEEEeccCcCCCcccc-CCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC--CCCcccCCceEE
Q 043646 258 LLHQYGGFACFDFAASGPYVKIN-LRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS--SPPSTCGGGTVN 332 (625)
Q Consensus 258 la~~~g~~vivD~A~~~g~~~id-~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~--~~p~~~ggg~v~ 332 (625)
+|++||+|+|+|+|++.+....+ .+.. +.+.+|++++++|||+++|.|+|++++++....... ..+.+.....
T Consensus 266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~-- 343 (481)
T 4e1o_A 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHAN-- 343 (481)
T ss_dssp HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTT--
T ss_pred HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcc--
Confidence 99999999999999987643221 1111 122469999999999999999999999876421111 1121211100
Q ss_pred eeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCc
Q 043646 333 YVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQ 412 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~ 412 (625)
......+ .......+.+.-...+.+++... ...|.+.+.++..++++++.+.|+++|+++++.+. ..
T Consensus 344 -----~~~~~~~---~~~~~~~~r~~~~l~~~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---~~ 410 (481)
T 4e1o_A 344 -----SGVATDF---MHWQIPLSRRFRSVKLWFVIRSF--GVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR---HL 410 (481)
T ss_dssp -----TTTSCCG---GGGSSSSCCCCTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC---CS
T ss_pred -----cCCCCCc---ccccccCCCCccHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---ce
Confidence 0000000 01111222221111123334433 45678888899999999999999999999998653 56
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC-eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG-IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g-I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
++++|.+.+.. ....++.+.|+++ | +.+.++...
T Consensus 411 ~~v~f~~~~~~--------------~~~~~l~~~L~~~-g~~~~~~~~~~------------------------------ 445 (481)
T 4e1o_A 411 GLVVFRLKGPN--------------SLTENVLKEIAKA-GRLFLIPATIQ------------------------------ 445 (481)
T ss_dssp SEEEEEESSCH--------------HHHHHHHHHHHHH-CSSBCEEEEET------------------------------
T ss_pred eEEEEEeCCch--------------HHHHHHHHHHHhC-CeEEEEeeEEC------------------------------
Confidence 88888774311 1135677888664 5 333321110
Q ss_pred CCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhh
Q 043646 492 KPGWTRITFP-YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 492 ~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++|+++. +.+|++||++++++|++++++.
T Consensus 446 g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 446 DKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1378999985 5669999999999999987653
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-30 Score=281.63 Aligned_cols=432 Identities=13% Similarity=0.127 Sum_probs=275.9
Q ss_pred ccccccc---cCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHH-HHHHHHHhhCCCCCCC
Q 043646 34 QTCSEFK---NDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRY-IEDYIINNVLPFYGNT 108 (625)
Q Consensus 34 ~~~~~~~---~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~-v~ea~~~~l~~~~~n~ 108 (625)
+.++... ++..+|.. .+.++.++++++.+.. ...+.+| + |+.+-.++..++. +.+.+...+ |+
T Consensus 55 p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~p---~---f~~~~~~~~~~~~~~~e~l~~~~-----~~ 122 (511)
T 3vp6_A 55 PHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKY-GVRTGHP---R---FFNQLSTGLDIIGLAGEWLTSTA-----NT 122 (511)
T ss_dssp HHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHT-SCCTTST---T---EESSSSCCCCHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhc-cCCCCCC---C---ceEeecCCCcHHHHHHHHHHHHh-----cc
Confidence 3444445 66677775 7888999999876643 3333333 3 5555444544444 445555555 23
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc
Q 043646 109 HTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG 187 (625)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~ 187 (625)
....|..++...++.+++++++++++|.+.+ ..++||++|+.+++..+..+.....+.. ++ .++...++.+|+++
T Consensus 123 ~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~-~~---~G~~~~~~~~v~~s 198 (511)
T 3vp6_A 123 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEV-KT---KGMAAVPKLVLFTS 198 (511)
T ss_dssp CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHH-HH---HCGGGSCCEEEEEE
T ss_pred CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhh-hh---cCcccCCCeEEEEC
Confidence 3234556778889999999999999999842 3788997777776655554432111000 00 01221234469999
Q ss_pred CCCCchhHHHHHHcCC---eEEEEecCCCCCCCHHHHHHHHHHhhhC-CCCeEEEEecccCccccccCHHHHHHHHHHcC
Q 043646 188 PYEHHSNLLSWRQSLA---EVVEIGLDDNGLLDIEALRSQLELYKAA-KRPMLGSFSACSNVTGIYSDTRSIARLLHQYG 263 (625)
Q Consensus 188 ~~~h~s~~~~~~~~G~---~vv~v~~~~~~~ld~~~L~~~l~~~~~~-~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g 263 (625)
...|+++..+++..|+ +++.|+++.++.+|+++|+++|++.... .+|++|++++++|+||.+.|+++|+++|++||
T Consensus 199 ~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~ 278 (511)
T 3vp6_A 199 EQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 278 (511)
T ss_dssp TTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence 9999999999999888 9999999989999999999999854222 23899999999999999999999999999999
Q ss_pred CEEEEeccCcCCCccccC-CC--CCCCCCcEEEEcCCCCCCCCCCceEEEEecccc-c-c-CCCCCcccCCceEEeeccc
Q 043646 264 GFACFDFAASGPYVKINL-RS--RNIDGYDAIFLATHKFLGGPGTPGILLISKALY-Q-L-GSSPPSTCGGGTVNYVNAF 337 (625)
Q Consensus 264 ~~vivD~A~~~g~~~id~-~~--~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~-~-l-~~~~p~~~ggg~v~~~~~~ 337 (625)
+|+|+|+|++.+....+- +. .+..++|++++++||||++|.|+|++++++... . . ....++...... .+..
T Consensus 279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~-~~~~-- 355 (511)
T 3vp6_A 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDK-HYDV-- 355 (511)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSC-SSCG--
T ss_pred CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccc-cccc--
Confidence 999999999987663221 10 012367999999999999999999999987531 1 1 111222211110 0000
Q ss_pred cccccccccchhhhhcCCCh-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEE
Q 043646 338 DEKDTLYLEDIEERENGGTP-QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILS 416 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~~~gt~-~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~ 416 (625)
.+.........+.+ ..+. +.+++... ...|.+.+.++...+++++.+.|+++|+++++.+. ....++++
T Consensus 356 ------~~~~~~~~~~~~r~~~al~-~~~al~~~--g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~-~p~~~~v~ 425 (511)
T 3vp6_A 356 ------SYDTGDKAIQCGRHVDIFK-FWLMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG-EPEHTNVC 425 (511)
T ss_dssp ------GGCCGGGSSCSSCCCCHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSS-CCSSSCEE
T ss_pred ------ccCccCCCCCCCCchHHHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC-CCCeEEEE
Confidence 00000111122222 1222 22334433 45678888999999999999999999999998741 23678889
Q ss_pred EEeccCCCCCCc-cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 417 FLVYSTTNSSPE-NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 417 f~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
|...+....... .....++......++.+.|.+ .|+.+.... +... +.++
T Consensus 426 f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~G~~~~~~~----~~~~------------------------~~~~ 476 (511)
T 3vp6_A 426 FWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQ----PQGD------------------------KANF 476 (511)
T ss_dssp EEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH-HTSCEEEEE----EETT------------------------EEEE
T ss_pred EEEeCccccccccchhHHHHHHHHHHHHHHHHHh-cCCEEEEEE----EeCC------------------------ceEE
Confidence 887653200000 000000000002357777766 465443210 0000 1257
Q ss_pred EEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 496 TRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 496 iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+|+++ ++.++.+||++++++|+++.+..
T Consensus 477 lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 477 FRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999 79999999999999999887654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=285.26 Aligned_cols=411 Identities=12% Similarity=0.067 Sum_probs=268.6
Q ss_pred cccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcc
Q 043646 35 TCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDS 113 (625)
Q Consensus 35 ~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~ 113 (625)
..+...+...+|.. .+.++.++.+++.+......+.+| +...|++.+.. .+..+.+++...+ |+....+
T Consensus 36 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~--~~~~~~~~~~~~~-----n~~~~~~ 105 (486)
T 1js3_A 36 GYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSP---YFFAYFPTASS--YPAMLADMLCGAI-----GCIGFSW 105 (486)
T ss_dssp TCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTST---TBCSSSCCCCC--HHHHHHHHHHHHH-----CCCCSSG
T ss_pred HHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCC---CceEeCCCCCC--HHHHHHHHHHHHh-----CcCcccc
Confidence 44455565565655 778899999998764333334443 43445544322 3445777776665 3443345
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhcc--CCCC---
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQA--------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL--RDEE--- 180 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l--~~gd--- 180 (625)
..+....++.+++++++++++|.+.+ ..++||++||.+++..+..+.. .....+ ..||
T Consensus 106 ~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~---------~~~~~~~~~~gd~~~ 176 (486)
T 1js3_A 106 AASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAART---------KVVRRLQAASPGLTQ 176 (486)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHH---------HHHHHHHHHSTTCCH
T ss_pred ccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHH---------HHhhhhhccCccchh
Confidence 56677888999999999999999742 2578886666665555544321 000000 0022
Q ss_pred -----ceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHH
Q 043646 181 -----RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRS 254 (625)
Q Consensus 181 -----~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~ 254 (625)
+.+|+++...|+++..+++..|++++.||++.++.+|+++|+++|++....+ .+.+|++++++|+||.+.|+++
T Consensus 177 ~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~ 256 (486)
T 1js3_A 177 GAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLE 256 (486)
T ss_dssp HHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHH
T ss_pred cccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHH
Confidence 3458889999999999999999999999998889999999999998542212 3469999999999999999999
Q ss_pred HHHHHHHcCCEEEEeccCcCCCccc-cCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEecccc--c-cCCCCCcccCC
Q 043646 255 IARLLHQYGGFACFDFAASGPYVKI-NLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALY--Q-LGSSPPSTCGG 328 (625)
Q Consensus 255 I~~la~~~g~~vivD~A~~~g~~~i-d~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~--~-l~~~~p~~~gg 328 (625)
|+++|++||+|+|+|+|++.+.... +.+.. +..++|++++++|||+++|.++|++++++... + +....++..++
T Consensus 257 I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~ 336 (486)
T 1js3_A 257 VGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336 (486)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---------
T ss_pred HHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence 9999999999999999998765433 22221 12368999999999999999999999987631 1 11111222121
Q ss_pred ceEEeeccccccccccccchhhhhcCCCh-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTP-QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNT 407 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~-~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~ 407 (625)
+.. . . ....+. ......+.+ ..+. +.+++... ...|++.+.++...+++++.+.|.++|+++++.+.
T Consensus 337 ~~~-~-~----~~~~~~---~~~~~~~rr~~~~~-~~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~ 404 (486)
T 1js3_A 337 HQG-S-G----LITDYR---HWQLPLGRRFRSLK-MWFVFRMY--GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV 404 (486)
T ss_dssp ----C-C----SCCCGG---GSSSCSCCCCTHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC
T ss_pred ccc-c-c----CCCCcc---ccCCCCCCchhHHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC
Confidence 110 0 0 000000 000111111 1121 12333333 34567888889999999999999999999998753
Q ss_pred CCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhC
Q 043646 408 SVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 408 ~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
..++++|...+.. .+ ..++.+.|.+ .|+.+.++..+.
T Consensus 405 ---~~~~v~f~~~~~~-------------~~-~~~l~~~L~~-~g~~~~~~~~~~------------------------- 441 (486)
T 1js3_A 405 ---TLGLVCFRLKGSD-------------GL-NEALLERINS-ARKIHLVPCRLR------------------------- 441 (486)
T ss_dssp ---CSSEEEEEESSCH-------------HH-HHHHHHHHHH-HTSCBCEEEEET-------------------------
T ss_pred ---ceeEEEEEecChH-------------HH-HHHHHHHHHh-cCCEEEEEEEEC-------------------------
Confidence 4678888764310 01 2567777765 465433221110
Q ss_pred CCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhh
Q 043646 488 YLGVKPGWTRITF-PYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 488 ~~g~~~g~iRis~-~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++|+++ ++++|++|+++++++|++++.+.
T Consensus 442 ----~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 442 ----GQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp ----TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 137899997 67799999999999999987664
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-30 Score=281.84 Aligned_cols=389 Identities=12% Similarity=0.065 Sum_probs=268.9
Q ss_pred CCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHH
Q 043646 44 HPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKM 122 (625)
Q Consensus 44 ~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~ 122 (625)
.+|.. .+.++.++.+++.+... | .+..++....++++++.+.+++.+.+...+.+++ ..+...++
T Consensus 31 ~~p~~~~~~~~~~~~~~~~i~l~--------g-np~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~-----~~p~~~~l 96 (502)
T 3hbx_A 31 KMPENSIPKEAAYQIINDELMLD--------G-NPRLNLASFVTTWMEPECDKLIMSSINKNYVDMD-----EYPVTTEL 96 (502)
T ss_dssp SCCSSCCCHHHHHHHHHHHGGGS--------C-CGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTT-----TCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhccC--------C-CCCceeccccCCCCCHHHHHHHHHHhccCCCChh-----cChhHHHH
Confidence 45555 77788888888776321 2 2334455545567788899999887755444432 23457888
Q ss_pred HHHHHHHHHHHhCCC--CCC--cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC---ceEEEEcCCCCchhH
Q 043646 123 VHEASNYIKRCLGGG--QAD--AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE---RWVVFLGPYEHHSNL 195 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~--~~~--~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~ 195 (625)
.+++++++++++|++ +++ ..++| +|+++++..++.++.... ..+. ..+|+ +++|+++...|.++.
T Consensus 97 e~~~~~~la~l~g~~~~~~~~~~g~~t-~ggtea~~~a~~a~~~~~----~~~~---~~~G~~~~~~~vi~~~~~h~s~~ 168 (502)
T 3hbx_A 97 QNRCVNMIAHLFNAPLEEAETAVGVGT-VGSSEAIMLAGLAFKRKW----QNKR---KAEGKPVDKPNIVTGANVQVCWE 168 (502)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCEEEEE-SSHHHHHHHHHHHHHHHH----HHHH---HHTTCCCSCCEEEEETTCCHHHH
T ss_pred HHHHHHHHHHHhCCCcccccCCcceec-CcHHHHHHHHHHHHHHHH----hHHH---HhcCCCCCCcEEEEcCCchHHHH
Confidence 999999999999998 432 22457 455555555444431100 0000 01132 236999999999999
Q ss_pred HHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc------CCEEEE
Q 043646 196 LSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY------GGFACF 268 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~------g~~viv 268 (625)
..++..|++++.|+++++ +.+|+++|+++|+ ++|++|++++++|+||.+.|+++|+++|+++ |+++|+
T Consensus 169 ~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~V 243 (502)
T 3hbx_A 169 KFARYFEVELKEVKLSEGYYVMDPQQAVDMVD-----ENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHV 243 (502)
T ss_dssp HHHHHTTCEEEEECCBTTBCSCCHHHHHHHCC-----TTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHcCceeEEEecCCCcCcCCHHHHHHHHh-----hCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEE
Confidence 999999999999999875 8999999999998 5799999999999999999999999999999 999999
Q ss_pred eccCcCCC-------ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC---CCCCcccCCceEEeecccc
Q 043646 269 DFAASGPY-------VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG---SSPPSTCGGGTVNYVNAFD 338 (625)
Q Consensus 269 D~A~~~g~-------~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~---~~~p~~~ggg~v~~~~~~~ 338 (625)
|+|++.+. .+.++.. .++|++++++|||+++|.|+|++++++... +. ...+.+.++....+
T Consensus 244 D~A~~~~~~p~~~~~~~~~~~~---~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~-l~~~~~~~~~yl~~~~~~~----- 314 (502)
T 3hbx_A 244 DAASGGFIAPFLYPELEWDFRL---PLVKSINVSGHKYGLVYAGIGWVIWRNKED-LPEELIFHINYLGADQPTF----- 314 (502)
T ss_dssp ECTTGGGTHHHHCTTCCCSTTS---TTEEEEEEETTTTTCCCSSCEEEEESSGGG-SCGGGCEEECSSSSCEEEC-----
T ss_pred ECCccchhhhhhCcccccccCC---CCceEEEECcccccCCCCCeEEEEEeCHHH-hhHHhccCcccccCCCCCc-----
Confidence 99998443 2333332 389999999999998999999999976431 11 11122222221110
Q ss_pred ccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEE
Q 043646 339 EKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILS 416 (625)
Q Consensus 339 ~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~ 416 (625)
...++.+...++ .+++..+ ...|++.+.++...+++++.+.|.++++++++.+ ....++++
T Consensus 315 -------------~~~~sr~~~~~~a~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~~v~ 377 (502)
T 3hbx_A 315 -------------TLNFSKGSSQVIAQYYQLIRL--GHEGYRNVMENCRENMIVLREGLEKTERFNIVSK--DEGVPLVA 377 (502)
T ss_dssp -------------CSCCSCBSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC--SSSSSEEE
T ss_pred -------------cccCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC--CCCceEEE
Confidence 001222222222 2333333 3456778888999999999999999988999875 13678888
Q ss_pred EEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 417 FLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
|.+.++. .++..++.+.|.+ .||.++........ . ...++
T Consensus 378 f~~~~~~-------------~~~~~~l~~~L~~-~Gi~v~~~~~p~~~--------~------------------~~~~l 417 (502)
T 3hbx_A 378 FSLKDSS-------------CHTEFEISDMLRR-YGWIVPAYTMPPNA--------Q------------------HITVL 417 (502)
T ss_dssp EEESSCS-------------SCCHHHHHHHHHT-TTCBCCEEECCTTC--------T------------------TCEEE
T ss_pred EEecCCC-------------cCCHHHHHHHHHh-CCcEEeeccCCccc--------C------------------CceEE
Confidence 8875421 2445688999965 79998643221100 0 23789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 497 RITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
||+++..+|.+|++++++.|+++++...+
T Consensus 418 Risv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 418 RVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876543
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-30 Score=270.42 Aligned_cols=342 Identities=10% Similarity=0.046 Sum_probs=243.1
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~ 164 (625)
...++.|.+++.+.+ + +. ..... ....++++++++++|.+.+ +++++| +|+++++..++.++
T Consensus 13 ~~~~~~v~~a~~~~~----~--~~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~-~g~t~a~~~~~~~~---- 76 (366)
T 1m32_A 13 LTTSRTVKEAMLFDS----C--TW-----DDDYNIGVVEQIRQQLTALATASEGYTSVLLQ-GSGSYAVEAVLGSA---- 76 (366)
T ss_dssp CCCCHHHHHTTCCCC----C--TT-----SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEE-SCHHHHHHHHHHHS----
T ss_pred cCCCHHHHHHHhhhh----c--CC-----CHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEe-cChHHHHHHHHHHh----
Confidence 446778888775532 1 11 11222 5678899999999993211 268998 67888888888876
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchh-HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEeccc
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSN-LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACS 243 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~ 243 (625)
+++||+ +|++++.+|++. ....+..|++++.++++.++.+|+++|+++++++ .++++|++++++
T Consensus 77 -----------~~~gd~-vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~ 141 (366)
T 1m32_A 77 -----------LGPQDK-VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD---PTISHIAMVHSE 141 (366)
T ss_dssp -----------CCTTCC-EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC---TTCCEEEEESEE
T ss_pred -----------cCCCCe-EEEEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC---CCeEEEEEeccc
Confidence 467776 445556778763 3455667999999999888889999999999852 368999999999
Q ss_pred CccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCC
Q 043646 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPP 323 (625)
Q Consensus 244 n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p 323 (625)
||||.+.|+++|.++|++||+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++++++ .+.+.+
T Consensus 142 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~ 216 (366)
T 1m32_A 142 TTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQK--LAACKG 216 (366)
T ss_dssp TTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHHH--HTTCTT
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCccccCcCcccccc---CccEEEecCcccccCCCceEEEEECHHH--HHhhcC
Confidence 99999999999999999999999999999988877776654 6899999999999888889999999987 334432
Q ss_pred cccCCceEEeeccccccccccccchhh--hhcCCChhHHHHH--HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCC
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEE--RENGGTPQIVQMI--RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~--~~~~gt~~~~~~~--~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l 398 (625)
...+. ..+....+..... ....++++..+.. .++++.+ ...| .+.+.++.+++++++.+.|.++
T Consensus 217 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 217 HSRSL---------SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL--AKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp CCSCS---------TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCc---------cccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH--HHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 11000 0000000000000 1112455555443 4455554 3445 7788889999999999999887
Q ss_pred CcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 399 QNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
+++++.+. ..+.+ ++.+.+ +.. .+.+..++.+.|.+ +||.+++|..|.
T Consensus 286 -~~~~~~~~-~~~~~~~~~~~~-~~~------------~~~~~~~~~~~l~~-~gi~v~~~~~~~--------------- 334 (366)
T 1m32_A 286 -GFNTLLDD-ELHSPIITAFYS-PED------------PQYRFSEFYRRLKE-QGFVIYPGKVSQ--------------- 334 (366)
T ss_dssp -TCCBSSCG-GGBCSSEEEEEC-CCC------------TTCCHHHHHHHHHH-TTEECEECCCSS---------------
T ss_pred -CCeeccCc-hhcCceEEEEEc-Ccc------------CCCCHHHHHHHHHH-CCEEEECCcCCC---------------
Confidence 77766542 12345 444443 310 02346788888865 599999887663
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++++||+++.+++++|+++++++|++++.
T Consensus 335 ---------------~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 335 ---------------SDCFRIGNIGEVYAADITALLTAIRTAMY 363 (366)
T ss_dssp ---------------SCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred ---------------CCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998754
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=273.49 Aligned_cols=342 Identities=12% Similarity=0.088 Sum_probs=241.9
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCC---cchhhHHHHHHHHHHHHHHHHHhCCCCCCc-EEEeCChHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTS---DSYVGQRMTKMVHEASNYIKRCLGGGQADA-IIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~---~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~-vift~sGttaal 153 (625)
.+|+|+++.++.|+.|++++.+.+..+. +++.. ....+....+..+++++++++++|++++.+ +++| +|+++++
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t-~g~t~a~ 81 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQ-GGASTQF 81 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEES-SHHHHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEEC-CCchHHH
Confidence 5799999999999999999999886543 32211 112345567788999999999999965324 4666 7888989
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh--HHHHHHcCCeEEEEecCC---CC-CCCHHHHHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN--LLSWRQSLAEVVEIGLDD---NG-LLDIEALRSQLEL 227 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~---~~-~ld~~~L~~~l~~ 227 (625)
..++.++ +++||+ |++....|++. ....+..| +++.++++. .+ .+|.++++ ++
T Consensus 82 ~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~- 140 (362)
T 2c0r_A 82 AMIPMNF---------------LKEGQT--ANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ- 140 (362)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC-
T ss_pred HHHHHhc---------------CCCCCe--EEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC-
Confidence 9988877 578886 66655554443 23445679 999999872 22 35666553 44
Q ss_pred hhhCCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCc
Q 043646 228 YKAAKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTP 306 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (625)
++|++|++++++|+||.+ .|+++| +|+++++|++|+.+..++++.+ .|++++|+||++| |.|+
T Consensus 141 ----~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~-----~d~~~~s~~K~~g-~~G~ 204 (362)
T 2c0r_A 141 ----DNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ-----FGLVYAGAQKNLG-PSGV 204 (362)
T ss_dssp ----TTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTC-CSSC
T ss_pred ----CCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchhH-----CcEEEEecccccc-CcCc
Confidence 589999999999999995 788887 8999999999999988877653 4999999999997 7789
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQ 383 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~ 383 (625)
|++++++++ ++.+.+... .. ..+..........+|++..... .++++++ +.. +++.+.++
T Consensus 205 G~l~~~~~~--~~~l~~~~~--~~-----------~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~--~~~~~~~~~~~~ 267 (362)
T 2c0r_A 205 TVVIVREDL--VAESPKHLP--TM-----------LRYDTYVKNNSLYNTPPSFGIYMVNEVLKWI--EERGGLEGVQQA 267 (362)
T ss_dssp EEEEEEGGG--SSSCCTTSC--GG-----------GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHH
T ss_pred EEEEEcHHH--HhhccccCc--hH-----------HhHHHHhhccCcCCCchHHHHHHHHHHHHHH--HHhCCHHHHHHH
Confidence 999999988 334433110 00 0000000112335677766543 3444443 334 68889999
Q ss_pred HHHHHHHHHHhhCCCCcE-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 384 EDVYIESALGRILPNQNI-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
.+++++++.+.|.+++++ ++..+......++++|.+... .+..++++.|. +.||.+++|..+
T Consensus 268 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~L~-~~gi~~~~g~~~- 330 (362)
T 2c0r_A 268 NRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASE---------------ELEKEFVKASE-QEGFVGLKGHRS- 330 (362)
T ss_dssp HHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCH---------------HHHHHHHHHHH-HTTEESCBCCTT-
T ss_pred HHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCc---------------chHHHHHHHHH-HCCCeeccCCCC-
Confidence 999999999999988646 776532112345666654211 12567888885 479988766433
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|||++.+++++|+++++++|++++++
T Consensus 331 ------------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 331 ------------------------------VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 256999999999999999999999988654
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-31 Score=291.00 Aligned_cols=371 Identities=12% Similarity=0.019 Sum_probs=254.2
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCC---------Ccc
Q 043646 43 HHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHT---------SDS 113 (625)
Q Consensus 43 ~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~---------~~~ 113 (625)
.++|+.-..++.+..+|++|+.. ...+|||++++++.|+.|.+++....-..+.++.. ..+
T Consensus 56 ~~lp~~g~~~~~i~~~~~~~~~~----------~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (456)
T 2z67_A 56 RKIPENGIDDEKIKLFLKFLSMM----------DTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKA 125 (456)
T ss_dssp CSCCSSCCCHHHHHHHHHHHHTT----------BGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTB
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc----------cccccccccccccccccccccccCccccccCCCccHHHHHHhhCccc
Confidence 35665544456678888999765 34689999999999999999877633111112111 012
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch
Q 043646 114 YVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS 193 (625)
Q Consensus 114 ~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (625)
..+....++++++++++++++|++++ ++||++|+.+++...+.++. .+.+++ +|+++..+|++
T Consensus 126 ~~~~~~~~~~~~~~~~la~~~g~~~~--~~~t~g~te~a~~~al~~~~-------------~~~~~~--~vi~~~~~h~s 188 (456)
T 2z67_A 126 SGASIMYALTNKILESFFKQLGLNVH--AIATPISTGMSISLCLSAAR-------------KKYGSN--VVIYPYASHKS 188 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCE--EEEESSCHHHHHHHHHHHHH-------------HHHCCC--EEEEECCCCHH
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCCCC--EEEeCcHHHHHHHHHHHHHH-------------HhcCCC--EEEEECCCcHH
Confidence 23335778889999999999999754 88985444244332222221 011344 48878889999
Q ss_pred hHHHHHHcCCeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 194 NLLSWRQSLAEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
+...++..|++++.+++ +.++.+|+++|+++|.+....+++.+|++++++|+||.+.|+++|+++|+++|+++|+|+
T Consensus 189 ~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~ 268 (456)
T 2z67_A 189 PIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIING 268 (456)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEEC
Confidence 99888889999999887 567789999999999321111478889999999999999999999999999999999998
Q ss_pred cCcCCC---ccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-ccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AASGPY---VKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~~g~---~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
|++... .+.+...+.. ++|++++|+|||+++|.|+|+++++ +++ +..+.|.+.|+.
T Consensus 269 A~~~~~~g~~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~--~~~l~~~~~g~~----------------- 328 (456)
T 2z67_A 269 AYAIQNNYYLEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEF--IKEISLSYPGRA----------------- 328 (456)
T ss_dssp TTTTTCHHHHHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHH--HHHHHTTSCSCB-----------------
T ss_pred cchHHHHHhhHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHH--HhhcCcCCCCCC-----------------
Confidence 876443 3444332211 6899999999998889999999995 444 222233333221
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCC
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
.+++ .+. ..+++..+ ...|++.+.++...+++++.+.|.+++ ++.++.+. ++++|.+..+.
T Consensus 329 -------~~~~-~~~-~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-----~~v~~~~~~~~ 392 (456)
T 2z67_A 329 -------SATP-VVN-TLVSLLSM--GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-----SPIASCISVNS 392 (456)
T ss_dssp -------CSHH-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-----CSSEEEEECSS
T ss_pred -------CCCH-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-----CeEEEEEeccc
Confidence 1222 222 12333333 345678889999999999999998875 76666542 66667652111
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCe---eee------cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGI---QAR------GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI---~v~------~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
. ..++.+.|.+ .|| .+. .|.+|.. ...+
T Consensus 393 --------------~-~~~l~~~L~~-~gi~~~rv~~~~g~f~G~~~~~---------------------------~~~~ 429 (456)
T 2z67_A 393 --------------D-PVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGT---------------------------YTHD 429 (456)
T ss_dssp --------------C-HHHHHHHHHH-TTEESCEEECTTCHHHHTCSSC---------------------------CSCC
T ss_pred --------------H-HHHHHHHHHH-cCCCcceEEeecCccccccccc---------------------------cCcc
Confidence 1 3578888865 565 332 1333321 0247
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++|+|++.++|++|+|+++++|+++
T Consensus 430 ~vr~s~~~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 430 YIVMNAAIGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred hhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999864
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=270.10 Aligned_cols=347 Identities=12% Similarity=0.066 Sum_probs=243.2
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC---CCcEEEeCChHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ---ADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~---~~~vift~sGttaal~~l 156 (625)
|+...+....++.|.+++.+.+.. + ..........+++++++++++... .++|+|| +|+++++..+
T Consensus 7 ~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~g~t~al~~~ 75 (385)
T 2bkw_A 7 TLLIPGPIILSGAVQKALDVPSLG-----H-----TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLA-GSGTLGWDIF 75 (385)
T ss_dssp EECSSSSCCCCHHHHHTTSCCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEE-SCTTHHHHHH
T ss_pred eeecCCCcCchHHHHHHHhccccc-----c-----CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEc-CchHHHHHHH
Confidence 445555566667777776543321 1 122234456678888888887641 2379998 6777778888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEc-CCC-CchhHHHHHHcCCeEEEEec-CCCCCCCHHHHHHHHHHhhhCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYE-HHSNLLSWRQSLAEVVEIGL-DDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~-h~s~~~~~~~~G~~vv~v~~-~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
+.++... +++||+ |++. ... |.+....++..|++++.+++ +.++.+|+++|++++++ .+
T Consensus 76 ~~~~~~~------------~~~gd~--vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~ 137 (385)
T 2bkw_A 76 ASNFILS------------KAPNKN--VLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ----NS 137 (385)
T ss_dssp HHHHSCT------------TCSCCE--EEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH----SC
T ss_pred HHHHhcc------------CCCCCe--EEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc----CC
Confidence 7776200 167885 5554 333 33333556778999999999 77888999999999984 37
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++|++++++|+||.+.|+++|+++|++| |+++|+|++++.+..++++..+ ++|++++|+||++++|.|+|++++
T Consensus 138 ~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~G~G~~~~ 214 (385)
T 2bkw_A 138 YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLC 214 (385)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEE
T ss_pred CCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcccccccc---CceEEEecCccccccCCcceEEEE
Confidence 89999999999999999999999999999 9999999999988877777665 789999999999988888999999
Q ss_pred eccccccC-CC------CCcccCCceEEeeccccccccccccchhhhhc------CCChhHHHHHH--HHHHHHHHhhcC
Q 043646 312 SKALYQLG-SS------PPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN------GGTPQIVQMIR--AALAFWVKEYIG 376 (625)
Q Consensus 312 ~~~~~~l~-~~------~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~------~gt~~~~~~~~--aal~~~~~~~~g 376 (625)
+++. ++ .+ ++..+++.. ..+.....+++ .++++..+.+. ++++++ +..|
T Consensus 215 ~~~~--~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~ 278 (385)
T 2bkw_A 215 SSRF--MDYALNDSKNGHVHGYFSSL------------RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEG 278 (385)
T ss_dssp CHHH--HHHHTCHHHHCCCSCSTTCH------------HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHC
T ss_pred cHHH--HHHHHhhccCCCCCceeecH------------HHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHcc
Confidence 8876 22 22 121222110 00001111222 35677666543 444443 3457
Q ss_pred HHHHHHHHHHHHHHHHHhh-CCCCcEEEeCCCCC--CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 377 YEVIKKQEDVYIESALGRI-LPNQNIQVLGNTSV--KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L-~~l~gv~v~~~~~~--~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
.+.+.++.+++++++.+.| +++ +++++.+... ....++.+.+ ++ ..++.+.|.+ +||
T Consensus 279 ~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~l~~-~gi 338 (385)
T 2bkw_A 279 LHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYV-AD-----------------PPDVIAFLKS-HGV 338 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEEC-SC-----------------HHHHHHHHHH-TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEec-CC-----------------HHHHHHHHHH-CCe
Confidence 8888899999999999999 988 8888754221 2345555544 21 4578888854 799
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe-cC---CCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT-FP---YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis-~~---~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|..+.. .++++||| ++ +.++++|+++++++|++++.+
T Consensus 339 ~v~~g~~~~~----------------------------~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 339 VIAGGIHKDI----------------------------GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp ECBCCCCTTT----------------------------GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEeCCCCccc----------------------------CCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 9998865421 14889999 66 357999999999999987643
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-30 Score=269.58 Aligned_cols=344 Identities=14% Similarity=0.116 Sum_probs=246.5
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh---hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChH-HHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV---GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGT-TAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~---~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGt-taal~ 154 (625)
+|+++.+..++|+.|.+++.+.+... .|++...+.. +....+..+++++++++++|++..++|++| +|+ ++++.
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~-~g~gt~al~ 81 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFL-QGGASLQFT 81 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEE-CCcchHHHH
Confidence 67788888899999999999988654 5665433322 456677899999999999999743489998 666 88888
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCc-eEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHH-HHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEER-WVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRS-QLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~-~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~-~l~~~~~~ 231 (625)
.++..+. .++++ .+|+++.++|++.. .++..| +++.+++++ ++.+|+++|++ +++
T Consensus 82 ~~~~~l~---------------~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~----- 139 (360)
T 1w23_A 82 MLPMNLL---------------TKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLN----- 139 (360)
T ss_dssp HHHHHHC---------------CTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC-----
T ss_pred HHHHHhc---------------CCCCcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccC-----
Confidence 8877762 33322 24777777777643 356679 999999986 66789999988 775
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
++|++|++++++||||.+.| +|. ++||+++|+|++|+.+..++++.. .|++++|+||++| |.|+|++++
T Consensus 140 ~~~k~v~~~~~~nptG~~~~--~i~---~~~~~~li~D~a~~~~~~~~~~~~-----~di~~~s~sK~~~-~~G~G~~~~ 208 (360)
T 1w23_A 140 ENDAYLHITSNNTIYGTQYQ--NFP---EINHAPLIADMSSDILSRPLKVNQ-----FGMIYAGAQKNLG-PSGVTVVIV 208 (360)
T ss_dssp TTEEEEEEESEETTTTEECS--SCC---CCCSSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTS-CTTCEEEEE
T ss_pred CCCCEEEEeCCCCCcceecc--ccc---ccCCceEEEechhhcCCCCcCccc-----CCEEEEEcccccC-CCCcEEEEE
Confidence 58999999999999999977 333 389999999999999887776653 3899999999997 778999999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYI-GYEVIKKQEDVYI 388 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~ 388 (625)
++++ ++.+.+.. + +.+.+ ... ...+...++++..++. .++++++ ... +.+.+.++.++++
T Consensus 209 ~~~~--~~~~~~~~-~-~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~ 271 (360)
T 1w23_A 209 KKDL--LNTKVEQV-P-TMLQY---------ATH--IKSDSLYNTPPTFSIYMLRNVLDWI--KDLGGAEAIAKQNEEKA 271 (360)
T ss_dssp EHHH--HCSCCTTC-C-GGGCH---------HHH--HHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHH
T ss_pred cHHH--HhhcccCC-c-chhhh---------hhh--hhccCCCCCCCHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHH
Confidence 9887 34444332 1 11000 000 0123455777776643 3445544 233 5788899999999
Q ss_pred HHHHHhhCCCCcE-EEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 389 ESALGRILPNQNI-QVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 389 ~~l~~~L~~l~gv-~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++.+.|.+++++ .+..+. ..+.+ ++.+.+... .+..++.+.|. ++||.+++|..+
T Consensus 272 ~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~l~-~~gi~~~~~~~~----- 329 (360)
T 1w23_A 272 KIIYDTIDESNGFYVGHAEK-GSRSLMNVTFNLRNE---------------ELNQQFLAKAK-EQGFVGLNGHRS----- 329 (360)
T ss_dssp HHHHHHHHTTTTSSEESSCG-GGBCSSEEEEECSSH---------------HHHHHHHHHHH-HTTEESCBCCTT-----
T ss_pred HHHHHHHHHccCcccccCCc-hhccCcEEEEEcCCC---------------ccHHHHHHHHH-HCCeeeecCCCC-----
Confidence 9999999988765 543211 12344 555544210 11346777774 479998766421
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++|||++.+++++|+++++++|++++.+
T Consensus 330 --------------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 330 --------------------------VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp --------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999988754
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=269.90 Aligned_cols=333 Identities=13% Similarity=0.121 Sum_probs=236.8
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceE
Q 043646 104 FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWV 183 (625)
Q Consensus 104 ~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~ 183 (625)
.++|+.. ++.+..+.+.++++++.+++++|++ + .++||+ |+++++..++..+ .+||+
T Consensus 20 ~~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~-~v~~~~-sgt~a~~~~~~~~----------------~~gd~-- 76 (379)
T 3ke3_A 20 VYTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-A-AVIIPG-SGTYGMEAVARQL----------------TIDED-- 76 (379)
T ss_dssp SCCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-E-EEEEES-CHHHHHHHHHHHH----------------CTTCE--
T ss_pred hccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-C-EEEEcC-ChhHHHHHHHHhC----------------CCCCe--
Confidence 3466653 3356777899999999999999987 3 788984 5555577665443 57886
Q ss_pred EEEcCCCCchhHH--HHHHcC--CeEEEEecCCC---------CCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccccc
Q 043646 184 VFLGPYEHHSNLL--SWRQSL--AEVVEIGLDDN---------GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYS 250 (625)
Q Consensus 184 Vlv~~~~h~s~~~--~~~~~G--~~vv~v~~~~~---------~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~ 250 (625)
|++....|++... ..+..| ++++.++.+.. +.+|+++|++++.+ +++++|++++++|+||.+.
T Consensus 77 vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~~~~G~~~ 152 (379)
T 3ke3_A 77 CLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE----DKSAIVYAPHVETSSGIIL 152 (379)
T ss_dssp EEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH----HTCSEEEEESEETTTTEEC
T ss_pred EEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh----cCCcEEEEEeecCCCceeC
Confidence 7777778877532 223345 48888886532 26899999999964 3789999999999999999
Q ss_pred C---HHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccC
Q 043646 251 D---TRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCG 327 (625)
Q Consensus 251 ~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~g 327 (625)
| +++|+++|++||+++|+|++++ |..++++..+ ++|++++|+||++++|.|+|++++++++.. .+.+....
T Consensus 153 ~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~--~l~~~~~~ 226 (379)
T 3ke3_A 153 SEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKEL---GIDVLISAPQKGWSSTPCAGLVMLSAAAIK--KVESTESN 226 (379)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHH---TCSEEEECTTTTTCSCCCEEEEEECHHHHH--HHHTCCCS
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeccc-CCcccccccc---CCCEEEecchhhcCCCCceEEEEECHHHHH--hhhcCCCC
Confidence 9 9999999999999999999999 8888887766 889999999999999999999999988732 22221100
Q ss_pred CceEEeeccccccccccccchhhhhc------CCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 328 GGTVNYVNAFDEKDTLYLEDIEEREN------GGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 328 gg~v~~~~~~~~~~~~~~~~~~~~~~------~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
+ +..+... +.....+++ .+|+++..+. .++++++ +..|++.+.++.+.+++++++.|.++
T Consensus 227 ~--------~~~~~~~-~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~- 294 (379)
T 3ke3_A 227 C--------FSLDLKQ-WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA--KEIGFDILRDAQWELGNRVRKVLTDK- 294 (379)
T ss_dssp C--------STTCHHH-HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred c--------eeecHHH-HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHc-
Confidence 0 0000000 001111111 2477766654 3556655 45689999999999999999999887
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLE 479 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~ 479 (625)
+++++.+. ..+.+++.....++. ...+.+.| .++||.+++|..|... ..
T Consensus 295 g~~~~~~~-~~~~~~i~~~~~~~~----------------~~~~~~~L-~~~Gi~v~~g~~~~~~--~~----------- 343 (379)
T 3ke3_A 295 GIESVAAE-GFEAPGVVVSYTERD----------------DMHKGSAF-AEAGLQIAAGVPLKVG--EP----------- 343 (379)
T ss_dssp TCCBSBCT-TCBCSSEEEEECSCH----------------HHHSSHHH-HHTTCCCEECCCCSSC--CC-----------
T ss_pred CCEecCCc-cccCceEEEEccCCc----------------chHHHHHH-HHCCeEEeCCcccccc--cc-----------
Confidence 78777653 345665554443211 11124556 4479999998766421 00
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++.+|||++.++|++||++++++|++++++.
T Consensus 344 -----------~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 344 -----------DNFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp -----------TTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred -----------CcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 024889999999999999999999999987653
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=265.38 Aligned_cols=313 Identities=15% Similarity=0.095 Sum_probs=223.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
.+.+..+.+.++++++++++|.+++ +++++ +|+++++..+..++. +++||+ |+++..+|+++
T Consensus 102 ~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~-~g~taa~ea~~~a~~--------------~~~gd~--Viv~~~~h~s~ 163 (438)
T 1wyu_A 102 VSQGVLQATFEYQTMIAELAGLEIA-NASMY-DGATALAEGVLLALR--------------ETGRMG--VLVSQGVHPEY 163 (438)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEE-CSCBS-SHHHHHHHHHHHHHH--------------HHTCCE--EEEETTSCHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc-ceEEe-CcHHHHHHHHHHHHh--------------cCCCCE--EEEcCccCHhH
Confidence 4566788999999999999999765 67787 677755444444431 356775 99999999999
Q ss_pred HHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...|+. .|++++.++. +++.+|+++ |+ ++|++|+++++ |+||.+.|+++|+++||++|+++++|.
T Consensus 164 ~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~-----~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 164 RAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG-----EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp HHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC-----TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC-----CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 888754 6999999997 456777765 44 57999999998 999999999999999999999999875
Q ss_pred c-CcCCCccccCCCCCCCCCcEEEEcCCC-----CCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 271 A-ASGPYVKINLRSRNIDGYDAIFLATHK-----FLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 271 A-~~~g~~~id~~~~~~~~~D~v~~S~hK-----~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
. ++.|....+ ..+ ++|++++|.|| |++|| ++|++++++++ .+.+++...| ++.... ......
T Consensus 233 d~~a~g~~~~~-~~~---g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~--~~~l~~~~~g-~~~~~~----~~~~~~ 300 (438)
T 1wyu_A 233 DPLSLGVLKPP-GAY---GADIAVGDGQSLGLPMGFGGP-HFGFLATKKAF--VRQLPGRLVS-ETVDVE----GRRGFI 300 (438)
T ss_dssp CTTGGGTBCCH-HHH---TCSEEEEECTTTTCCCGGGCS-CCEEEEECGGG--GGGCCSCCEE-EEEBTT----SCEEEE
T ss_pred chhhccCcCCC-ccC---CCCEEEECCcccCCCccCCCC-CeeEEEEcHHH--HHhCCCceec-cccccC----CCccee
Confidence 5 555543333 233 78999999887 67888 78999999987 3445443322 221110 000000
Q ss_pred c----cchhhhhcCCChhH-----HHHHHHH--HHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc
Q 043646 345 L----EDIEERENGGTPQI-----VQMIRAA--LAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA 413 (625)
Q Consensus 345 ~----~~~~~~~~~gt~~~-----~~~~~aa--l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~ 413 (625)
+ .....+++.+|+++ ...+.++ +.+. ...|.+.+.++.+.+++++.+.|++++|++++.+. ....
T Consensus 301 ~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~ 376 (438)
T 1wyu_A 301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL--GPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFN 376 (438)
T ss_dssp ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCS
T ss_pred eeccccccccchhcccCCccchHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEE
Confidence 0 12233556677755 2222333 3322 34578889999999999999999999999998752 1222
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeee--ecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA--RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v--~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
.+.+.. + .+..++++.|.+ .||.+ ++|.+|.
T Consensus 377 ~~~~~~-~----------------~~~~~~~~~L~~-~gi~v~~~~~~~~~----------------------------- 409 (438)
T 1wyu_A 377 EFALAL-P----------------KDPEAVRRALAE-RGFHGATPVPREYG----------------------------- 409 (438)
T ss_dssp EEEEEC-S----------------SCHHHHHHHHHH-TTCCCCEECCTTSC-----------------------------
T ss_pred EEEEeC-C----------------CCHHHHHHHHHH-CCceeccccccccC-----------------------------
Confidence 333322 1 236789999976 69998 6565542
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 492 KPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 492 ~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
++++|||++.++|++|+++++++|++++
T Consensus 410 -~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 410 -ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 3889999999999999999999998763
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=270.52 Aligned_cols=376 Identities=14% Similarity=0.056 Sum_probs=258.9
Q ss_pred CCCChHHHHHHHHHhhcC-CCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHH
Q 043646 47 HSKPSEEKLAWLRSQIIG-NDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVH 124 (625)
Q Consensus 47 ~~~~~~~~~~~lr~~~~~-~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~ 124 (625)
...+.++.++.++..+.. .+..+.++ + |+.+ ....++.+.+++.+.+..+ ..|+. .+.......++.+
T Consensus 41 ~g~~~~~i~~~l~~~~~~~~~~~~~~~---~---~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 110 (497)
T 3mc6_A 41 NGIPQDDVIEELNKLNDLIPHTQWKEG---K---VSGA--VYHGGDDLIHLQTIAYEKYCVANQL--HPDVFPAVRKMES 110 (497)
T ss_dssp SCCCHHHHHHHHHHHHHSSCCCCGGGT---C---BSSS--CSCCCHHHHHHHHHHHHHTSSCBTT--CTTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCC---C---Eeee--cCCCchHHHHHHHHHHHHHhhcCCC--CcccChHHHHHHH
Confidence 347778888888887642 22222221 1 1111 1122245666665555332 12332 2334456788899
Q ss_pred HHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC
Q 043646 125 EASNYIKRCLGGG-QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 125 ~~~~~ia~~~g~~-~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
++++++++++|.+ ..+.++++ +|+++++..++.++. +... -.+| .++.|+++...|+++..+++..|
T Consensus 111 ~~~~~la~~~g~~~~~~~~~~~-~ggt~a~~~a~~a~~--------~~~~--~~~g~~~~~Vi~~~~~h~~~~~~~~~~G 179 (497)
T 3mc6_A 111 EVVSMVLRMFNAPSDTGCGTTT-SGGTESLLLACLSAK--------MYAL--HHRGITEPEIIAPVTAHAGFDKAAYYFG 179 (497)
T ss_dssp HHHHHHHHHTTCCTTTCCEEEE-SSHHHHHHHHHHHHH--------HHHH--HHSCCSSCEEEEETTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCeEEEc-CcHHHHHHHHHHHHH--------HHHH--hcCCCCCceEEEeCCccHHHHHHHHHcC
Confidence 9999999999998 33378998 566666666666541 0000 0123 11259999999999999999999
Q ss_pred CeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc----
Q 043646 203 AEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---- 277 (625)
Q Consensus 203 ~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~---- 277 (625)
++++.|++++ ++.+|+++|+++++ +++++|++++++|+||.+.|+++|+++|++||+++|+|+|++.+..
T Consensus 180 ~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~ 254 (497)
T 3mc6_A 180 MKLRHVELDPTTYQVDLGKVKKFIN-----KNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFME 254 (497)
T ss_dssp CEEEEECBCTTTCSBCTTTTGGGCC-----SSEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGT
T ss_pred CeEEEEecCcccCcCCHHHHHHHHh-----hCCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhh
Confidence 9999999988 78999999999987 5799999999999999999999999999999999999999874322
Q ss_pred --------cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC--CCCCcccCCceEEeeccccccccccccc
Q 043646 278 --------KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG--SSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 278 --------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~--~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.... ++|++++++||++++|.++|+++++++..... ...+.+.++..
T Consensus 255 ~~~~~~~~~~~~~~~---g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 314 (497)
T 3mc6_A 255 KAGYKNLPLLDFRVP---GVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLY----------------- 314 (497)
T ss_dssp TTTCCSCCCCSTTST---TCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCB-----------------
T ss_pred hhcccCCccccccCC---CCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCc-----------------
Confidence 2333333 78999999999998898999999988763211 01111111110
Q ss_pred hhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCC
Q 043646 348 IEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTN 424 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~ 424 (625)
......|+.+...+ ..+++..+ ...|++.+.++...+++++.+.|.+ +|+++++++. +.++++|...
T Consensus 315 -~~~~~~g~~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~---~~~~v~~~~~---- 384 (497)
T 3mc6_A 315 -GSPTLAGSRPGAIVVGCWATMVNM--GENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP---RYSVISFSSK---- 384 (497)
T ss_dssp -CCSSSCSSCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC---CSSEEEEECT----
T ss_pred -CCcCcccCCcchhHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---CeeEEEEeCC----
Confidence 00011234333333 23444443 4556778888899999999999998 7999998653 5677777542
Q ss_pred CCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
+++..++.+.|.+ .||.++.+.. +..+|+++. .+
T Consensus 385 ------------~~~~~~l~~~L~~-~Gi~v~~~~~--------------------------------~~~~ri~~~-~~ 418 (497)
T 3mc6_A 385 ------------TLNIHELSDRLSK-KGWHFNALQK--------------------------------PVALHMAFT-RL 418 (497)
T ss_dssp ------------TTTHHHHHHHHHT-TTCBCEECCS--------------------------------SCCEEEECC-TT
T ss_pred ------------CCCHHHHHHHHHh-CCEEEecCCC--------------------------------CCeEEEEEe-CC
Confidence 1346789999966 6998875432 245899998 78
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 043646 505 SNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~ 524 (625)
+++|+++++++|++++.+..
T Consensus 419 t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 419 SAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp TTCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987643
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=268.77 Aligned_cols=373 Identities=14% Similarity=0.074 Sum_probs=253.5
Q ss_pred CCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCC--CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHH
Q 043646 48 SKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTA--SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHE 125 (625)
Q Consensus 48 ~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~--~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 125 (625)
..+.++.++.++..+......+.++ + |+.+.. ....++.+.+++...+. .|+.. +........+..+
T Consensus 75 g~~~~~i~~~l~~~~~~~~~~~~~~---~---~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~p~~~~le~~ 143 (514)
T 3mad_A 75 GLPRAEILAEIAAMGAAESPAWRDG---Y---ASGAVYHGDEHHIAFLNEVYALQSQ---SNPLH--PDLWPSTAKFEAE 143 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTT---C---BSSSCSCCCHHHHHHHHHHHHHHTT---CCTTC--TTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCC---c---eEEEecCCCCCHHHHHHHHHHHHhh---cCCcc--cccChHHHHHHHH
Confidence 3666777777777642222222221 1 222211 12223344444443332 23322 2234556778889
Q ss_pred HHHHHHHHhCCCCC-CcE--EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 126 ASNYIKRCLGGGQA-DAI--IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 126 ~~~~ia~~~g~~~~-~~v--ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
+++++++++|.+.+ +++ +|| +|+++++..++.++... + .+. .+ .++| .|+++...|+++...++..|
T Consensus 144 l~~~la~~~g~~~~~~~v~~~~t-~ggt~a~~~al~a~~~~--g-~~~---~g-~~~d--~Vi~~~~~~~~~~~~~~~~G 213 (514)
T 3mad_A 144 VVAMTAHMLGGDAAGGTVCGTVT-SGGTESLLLAMKTYRDW--A-RAT---KG-ITAP--EAVVPVSAHAAFDKAAQYFG 213 (514)
T ss_dssp HHHHHHHHTTGGGGTSCCEEEEE-SSHHHHHHHHHHHHHHH--H-HHH---HC-CSSC--EEEEETTSCTHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCCcceEEc-CcHHHHHHHHHHHHHHH--h-hhh---cC-CCCC--eEEEeCccchHHHHHHHHcC
Confidence 99999999999741 245 888 56777677776665210 0 000 00 1124 59999999999999999999
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc-----
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV----- 277 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~----- 277 (625)
++++.|+++.++.+|+++|+++|+ +++++|++++++|+||.+.|+++|+++|++||+++|+|+|++.+..
T Consensus 214 ~~v~~v~~~~~~~~d~~~Le~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~ 288 (514)
T 3mad_A 214 IKLVRTPLDADYRADVAAMREAIT-----PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAER 288 (514)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCC-----TTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHH
T ss_pred CeeEEeeeCCCCCCCHHHHHHHhc-----cCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHh
Confidence 999999999889999999999997 5799999999999999999999999999999999999999886543
Q ss_pred ------cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc----ccCCceEEeeccccccccccccc
Q 043646 278 ------KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS----TCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 278 ------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~----~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++... .++|++++++||++++|.++|+++++++... ..... +.++..
T Consensus 289 ~g~~~~~~~~~~---~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~----------------- 346 (514)
T 3mad_A 289 LGYPVPPFDFRL---EGVTSVSADTHKYGYGAKGTSVILYRRPDLL--HYQYFIAADWPGGLY----------------- 346 (514)
T ss_dssp TTCCCCCCSTTS---TTCCEEEECTTTTTCCCSSCEEEEESSHHHH--TTTCEEESSCTTCSE-----------------
T ss_pred cCCCCCcccccC---CCCcEEEECchhccCCCCCeEEEEEeCHHHh--ccccccccccCCCcc-----------------
Confidence 233333 3789999999999888888999999987632 21111 111111
Q ss_pred hhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 348 IEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
......|+++....+ .+++..+ ...+.+.+.++..++++++.+.|.++++++++.+. .+++.|...
T Consensus 347 -~~~~~~gs~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~----- 414 (514)
T 3mad_A 347 -FSPTFAGSRPGALSATAWAAMLSL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP----LWVIAVASD----- 414 (514)
T ss_dssp -EESSSCSSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC----SSEEEEECS-----
T ss_pred -cCCccCCCCchHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC----eEEEEEeCC-----
Confidence 011123555544433 3334433 45567888899999999999999999999988763 345555431
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC-CCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP-YYM 504 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~-~~~ 504 (625)
.++..++.+.|.+ +||.+ .|..| ++++|+++. ..+
T Consensus 415 -----------~~~~~~l~~~L~~-~Gi~v-~g~~~-------------------------------~~~~Ri~~~~~~~ 450 (514)
T 3mad_A 415 -----------ELNIYQVMEEMAG-RGWRL-NGLHR-------------------------------PPAFHVALTLRHT 450 (514)
T ss_dssp -----------SSCHHHHHHHHHT-TTCBC-EEETT-------------------------------TTEEEEECCGGGG
T ss_pred -----------CCCHHHHHHHHHh-cCCEe-ccCCC-------------------------------CCeEEEEEecCCC
Confidence 1346788998866 59988 44322 367999997 555
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 043646 505 SNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 505 t~edid~ll~aL~~~~~~~~ 524 (625)
+++++++++++|++++++..
T Consensus 451 ~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 451 EPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999987643
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=252.98 Aligned_cols=324 Identities=15% Similarity=0.085 Sum_probs=234.7
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.+++|+.+... ++++.|.+++.+.+.....+|. ....++++++++++|++++ +|++| +|+++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~lr~~la~~~~~~~~-~v~~~-~g~t~a~~ 98 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYPD-----------GWASSLRKEVADFYQLEEE-ELIFT-AGVDELIE 98 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCCC-----------cchHHHHHHHHHHhCCChh-hEEEe-CCHHHHHH
Confidence 467888876443 4678999999876643322221 2356799999999998776 89998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||+ |+++.+.|+++...++..|++++.++.++++.+|+++|+++++ +++
T Consensus 99 ~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 156 (363)
T 3ffh_A 99 LLTRVL---------------LDTTTN--TVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAID-----EKT 156 (363)
T ss_dssp HHHHHH---------------CSTTCE--EEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC-----TTE
T ss_pred HHHHHH---------------ccCCCE--EEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc-----cCC
Confidence 888876 478885 8888899999988888899999999998888999999999987 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
++|++++++||||.+.|+++|.++++.+ |+++|+|++++.... ...+........++++.|++|++|.|+ ++|+
T Consensus 157 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 236 (363)
T 3ffh_A 157 TIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGY 236 (363)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEE
T ss_pred CEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceee
Confidence 9999999999999999999999999987 999999999883221 111111111234577889999997343 3599
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYI 388 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (625)
+++++++.. .+.+. ....+++..+...+ .+.+ .+....+.+.++.+.++
T Consensus 237 ~~~~~~~~~--~l~~~---------------------------~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~~~~~ 285 (363)
T 3ffh_A 237 GIADKEIIR--QLNIV---------------------------RPPFNTTSIGQKLA-IEAI-KDQAFIGECRTSNANGI 285 (363)
T ss_dssp EEECHHHHH--HHHHT---------------------------CCSCCCBHHHHHHH-HHHH-HCHHHHHHHHHHHHHHH
T ss_pred eecCHHHHH--HHHHh---------------------------CCCCCCCHHHHHHH-HHHh-cCHHHHHHHHHHHHHHH
Confidence 999887732 11110 01123333332221 1121 12234567788888899
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++++++++.+. +.++.+.+ +. +..++.+.|.+ +||.+++|..|+
T Consensus 286 ~~l~~~l~~~~g~~~~~~~----~~~~~~~~-~~----------------~~~~~~~~l~~-~gi~v~~g~~~~------ 337 (363)
T 3ffh_A 286 KQYEAFAKRFEKVKLYPAN----GNFVLIDL-GI----------------EAGTIFSYLEK-NGYITRSGAALG------ 337 (363)
T ss_dssp HHHHHHHHHCTTCEECCCC----SSEEEEEC-SS----------------CHHHHHHHHHH-TTEECEETTTTT------
T ss_pred HHHHHHHhhCCCceECCCC----CeEEEEEC-CC----------------CHHHHHHHHHH-CCeEEEeCccCC------
Confidence 9999999886788886542 34443333 21 35688888865 799999987764
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++||+++ +++|+++++++|+++
T Consensus 338 -----------------------~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 338 -----------------------FPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp -----------------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred -----------------------CCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 2489999997 999999999999875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-29 Score=272.02 Aligned_cols=359 Identities=13% Similarity=0.105 Sum_probs=246.1
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAA 152 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~---~vift~sGttaa 152 (625)
.+.|.. +..+.++.|++++.+.+...+ ++|+...|..+....++.+.+++++++++|++.++ +|+++ +|+ ++
T Consensus 46 ~i~L~a-~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~-sGs-~a 122 (483)
T 1rv3_A 46 GLELIA-SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SGS-PA 122 (483)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHH-HH
T ss_pred CeEEEc-CCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC-CcH-HH
Confidence 345533 335678899999988887655 56654333334456778889999999999998642 37776 788 55
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--------HHcC--CeEEEEecC-CCCCCCHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--------RQSL--AEVVEIGLD-DNGLLDIEAL 221 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--------~~~G--~~vv~v~~~-~~~~ld~~~L 221 (625)
+..++.++ ++|||+ |++++.+|.++...+ ...| .+++.++++ .++.+|+++|
T Consensus 123 n~~~~~al---------------l~pGD~--Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~l 185 (483)
T 1rv3_A 123 NFAVYTAL---------------VEPHGR--IMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRL 185 (483)
T ss_dssp HHHHHHHH---------------TCTTCE--EEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHH
T ss_pred HHHHHHHh---------------cCCCCE--EEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHH
Confidence 55545555 579996 999998998886432 2334 455555556 4688999999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCC
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLG 301 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lg 301 (625)
++++++ ++|++|++ +++|++ .+.|+++|+++|+++|+++++|+||+.|....++......++|++++|+||+|+
T Consensus 186 e~~i~~----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~ 259 (483)
T 1rv3_A 186 EENARL----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLR 259 (483)
T ss_dssp HHHHHH----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGC
T ss_pred HHHHhh----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCC
Confidence 999984 37999999 889998 889999999999999999999999987766555443222268999999999999
Q ss_pred CCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHH
Q 043646 302 GPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEV 379 (625)
Q Consensus 302 gp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~ 379 (625)
||.| |+++++++.. . +. ..+|....| ...............|+++...+.+ +++... ...+.+.
T Consensus 260 Gprg-G~i~~~~~~~--~-~~--~~~g~~~~y------~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~--~~~~~~~ 325 (483)
T 1rv3_A 260 GCRA-GMIFYRRGVR--S-VD--PKTGKEILY------NLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKE 325 (483)
T ss_dssp CCSC-EEEEEECSBC--C----------CCBC------CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHH
T ss_pred CCCc-eEEEEcchhh--h-hc--cccCcchhh------HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHH
Confidence 9998 9999998862 1 22 122211100 0000000000111257777666543 333332 3345678
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee---
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR--- 456 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~--- 456 (625)
+.++...+++++.+.|.++ |++++.+.. ...+.+..... .+++..++.+.| ++.||.++
T Consensus 326 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~---~~~~~~v~~~~-------------~g~~~~~~~~~L-~~~gI~v~~~~ 387 (483)
T 1rv3_A 326 YQRQVVANCRALSAALVEL-GYKIVTGGS---DNHLILVDLRS-------------KGTDGGRAEKVL-EACSIACNKNT 387 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCEEGGGSC---SSSEEEEEGGG-------------GTCCHHHHHHHH-HHTTEECEEEC
T ss_pred HHHHHHHHHHHHHHHHHhc-CCEeccCCC---CCceEEEeccC-------------CCCCHHHHHHHH-HhCCcEEecCC
Confidence 8889999999999999887 899886521 11222222221 134567788877 55899999
Q ss_pred -cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHh
Q 043646 457 -GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS----NEEFEFILAALEFIAAY 522 (625)
Q Consensus 457 -~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t----~edid~ll~aL~~~~~~ 522 (625)
+|..|. . .++++||+++.++| ++|+++++++|++++..
T Consensus 388 ~pg~~~~--~--------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 388 CPGDKSA--L--------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CSSCSCT--T--------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcC--C--------------------------CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 776442 1 24789999987777 99999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=255.95 Aligned_cols=350 Identities=11% Similarity=0.002 Sum_probs=246.5
Q ss_pred ccccCCCCCCceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEE
Q 043646 67 VEFDYSFGKRRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAII 143 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vi 143 (625)
...++..| +.++.|..+.. .+.++.|.+++.+.+.... + .| +....++.+++++++++.+| .+++ +|+
T Consensus 19 ~~~~d~~g-~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~---~--~y--~~~~~~l~~~la~~l~~~~g~~~~~~-~i~ 89 (391)
T 3dzz_A 19 SIKWGVLK-EKELPMWIAEMDFKIAPEIMASMEEKLKVAA---F--GY--ESVPAEYYKAVADWEEIEHRARPKED-WCV 89 (391)
T ss_dssp BTTTTTCC-TTCEECCSSCCSSCCCHHHHHHHHHHHTTCC---C--CC--BCCCHHHHHHHHHHHHHHHSCCCCGG-GEE
T ss_pred ccceeccC-CCceeccccCCCCCCCHHHHHHHHHHHhcCc---C--CC--CCCCHHHHHHHHHHHHHHhCCCCCHH-HEE
Confidence 34444555 35667765543 3467899999988875311 0 11 11135678889999999998 4454 899
Q ss_pred EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-C--CCCCHHH
Q 043646 144 FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-N--GLLDIEA 220 (625)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~--~~ld~~~ 220 (625)
+| +|+++++..++.++ +++||+ |+++.++|+++...++..|++++.++++. + +.+|+++
T Consensus 90 ~~-~g~~~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 151 (391)
T 3dzz_A 90 FA-SGVVPAISAMVRQF---------------TSPGDQ--ILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWAD 151 (391)
T ss_dssp EE-SCHHHHHHHHHHHH---------------SCTTCE--EEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHH
T ss_pred EC-CCHHHHHHHHHHHh---------------CCCCCe--EEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHH
Confidence 98 78888899888877 478885 99999999999988999999999999852 2 2489999
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCc--E
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYD--A 291 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D--~ 291 (625)
|++++++ +++++|++++++||||.+ .++++|+++|++||+++|+|++++... ...++..+.....| +
T Consensus 152 l~~~l~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i 227 (391)
T 3dzz_A 152 LEEKLAT----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVV 227 (391)
T ss_dssp HHHHHTS----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEE
T ss_pred HHHHHhc----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEE
Confidence 9999973 479999999999999999 668999999999999999999987532 23333333111256 8
Q ss_pred EEEcCCCCCCCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHH
Q 043646 292 IFLATHKFLGGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAAL 367 (625)
Q Consensus 292 v~~S~hK~lggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal 367 (625)
++.|+||++|.|+ ++|+++++ +++.. .+... .......+++..+.. .+++
T Consensus 228 ~~~s~sK~~g~~G~r~G~~~~~~~~~~~--~~~~~------------------------~~~~~~~~~~~~~~~a~~~~l 281 (391)
T 3dzz_A 228 SLISPSKTFNLAALHAACAIIPNPDLRA--RAEES------------------------FFLAGIGEPNLLAIPAAIAAY 281 (391)
T ss_dssp EEECSHHHHTCTTTCCEEEECCSHHHHH--HHHHH------------------------HHHHTCSSCCTTHHHHHHHHH
T ss_pred EEEeChhhccccchhheEEEECCHHHHH--HHHHH------------------------HHhhccCCCCHHHHHHHHHHH
Confidence 8999999997343 48999987 55521 11000 011111223322221 2222
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
.. .....+.+.++.+.+++++.+.|.+ +|+++++.+. .+.+.+...+.. +++..++.+.
T Consensus 282 ~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~ 341 (391)
T 3dzz_A 282 EE---GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN----ASYLAWVDISAL-------------GMNAEDFCKY 341 (391)
T ss_dssp HH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC----BSSEEEEECGGG-------------CSCHHHHHHH
T ss_pred hc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC----ceEEEEEehhhc-------------CCCHHHHHHH
Confidence 21 1223567788888889999999988 8899887653 344444443321 2356788998
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+++||.+++|..|..+ .++++||+++ ++++++++++++|++++.+
T Consensus 342 l~~~~gi~v~~g~~~~~~---------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 342 LREKTGLIISAGNGYRGN---------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp HHHHHCEECEESGGGCTT---------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEeCchhhCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 865689999999877521 1489999998 6899999999999998865
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=259.02 Aligned_cols=345 Identities=13% Similarity=0.031 Sum_probs=242.6
Q ss_pred eEeccCCCCC--cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC--CCcEEEeCChHHHHH
Q 043646 78 LTYADHTASG--RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ--ADAIIFCGAGTTAAI 153 (625)
Q Consensus 78 ~~Yld~~~~~--~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~--~~~vift~sGttaal 153 (625)
.+.|..+... +.++.|.+++.+.+.... ...|.......++.+++++++++++|.+. +++|++| +|+++++
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~----~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~-~g~~~a~ 115 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGG----VQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIIT-PGTQGAL 115 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTH----HHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCC----CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCcHHHH
Confidence 5666653333 567889999988774210 00111122346788889999999999852 2379998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec------CCCCCCCHHHHHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL------DDNGLLDIEALRSQLEL 227 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~------~~~~~ld~~~L~~~l~~ 227 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++. +.++.+|+++|+++++
T Consensus 116 ~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~- 177 (407)
T 3nra_A 116 FLAVAAT---------------VARGDK--VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK- 177 (407)
T ss_dssp HHHHHTT---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH-
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh-
Confidence 8888776 468885 999999999999889999999999998 3567899999999998
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC--CCCCcEEEEcCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN--IDGYDAIFLATHK 298 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~--~~~~D~v~~S~hK 298 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++|+.+.. ...+.... ..+.++++.|++|
T Consensus 178 ----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK 253 (407)
T 3nra_A 178 ----AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSK 253 (407)
T ss_dssp ----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSS
T ss_pred ----hCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccc
Confidence 47899999999999999999 89999999999999999999886322 22222211 1245688899999
Q ss_pred CCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 299 FLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 299 ~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
++|.|+ ++|+++.++++.. .+.. ....+..+++++.+. ++..++.......
T Consensus 254 ~~g~~G~r~G~~~~~~~~~~--~l~~------------------------~~~~~~~~~~~~~~~--a~~~~l~~~~~~~ 305 (407)
T 3nra_A 254 TESLSGYRLGVAFGSRAIIA--RMEK------------------------LQAIVSLRAAGYSQA--VLRGWFDEAPGWM 305 (407)
T ss_dssp TTCCGGGCCEEEEECHHHHH--HHHH------------------------HHHHHTSSSCHHHHG--GGGGTTCCCTTHH
T ss_pred ccCCCeeeEEEEEcCHHHHH--HHHH------------------------HHhhhccCCChHHHH--HHHHHHhccchHH
Confidence 998443 4799998877621 1100 011122222222221 1112210011225
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
+...++.+.+++++.+.|.++++++++.+. .+.+.+...+. .+.+..++.+.|.+++||.+++
T Consensus 306 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~ 368 (407)
T 3nra_A 306 EDRIARHQAIRDELLHVLRGCEGVFARTPQ----AGSYLFPRLPK-------------LAVAPAEFVKILRLQAGVVVTP 368 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCBCCCCS----BSSEECCBCCC-------------BSSCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceeccCC----eeEEEEEeCCC-------------CCCCHHHHHHHHHHhCCEEEeC
Confidence 667778888899999999988888876553 23444433332 1245678888887768999999
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|..|+.. .++++||+++. +++++++++++|++++++.
T Consensus 369 g~~~~~~---------------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 369 GTEFSPH---------------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp GGGTCTT---------------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCC---------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHHh
Confidence 8877621 25899999984 8999999999999988653
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=257.31 Aligned_cols=334 Identities=15% Similarity=0.071 Sum_probs=234.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+|||++..++.++.+.+++.+.+..+ . .+....++.+++++++++++|.+++ +|+|| +|+++++..
T Consensus 13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~-~--------~~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~-~g~t~a~~~ 81 (359)
T 1svv_A 13 PKPYSFVNDYSVGMHPKILDLMARDNMTQ-H--------AGYGQDSHCAKAARLIGELLERPDA-DVHFI-SGGTQTNLI 81 (359)
T ss_dssp --CEECSCSCSSCCCHHHHHHHHHHTTCC-C--------CSTTCSHHHHHHHHHHHHHHTCTTS-EEEEE-SCHHHHHHH
T ss_pred CeeEEecCCCcCCCCHHHHHHHHHHHhhc-c--------ccccccHHHHHHHHHHHHHhCCCCc-cEEEe-CCchHHHHH
Confidence 45799999999999999999999887532 1 1112346788899999999998765 79998 677777888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHh--hhC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SWRQSLAEVVEIGLDDNGLLDIEALRSQLELY--KAA 231 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~--~~~ 231 (625)
++.++ +++||+ |+++.++|+++.. .++..|++++.++.+ ++.+|+++|++++++. ...
T Consensus 82 ~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~ 143 (359)
T 1svv_A 82 ACSLA---------------LRPWEA--VIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHM 143 (359)
T ss_dssp HHHHH---------------CCTTEE--EEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTS
T ss_pred HHHHH---------------hCCCCE--EEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccC
Confidence 87776 467774 9999999999876 377789999999986 6789999999999841 011
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccC---cCCCccccCCCCCC-CCCcEEEEcCCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAA---SGPYVKINLRSRNI-DGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~---~~g~~~id~~~~~~-~~~D~v~~S~hK~lggp~ 304 (625)
.++++|+++++ |+||.+.| +++|.++|++||+++|+|+++ +.+..+.+...... ...|++++++||+ |+|.
T Consensus 144 ~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~ 221 (359)
T 1svv_A 144 VIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMF 221 (359)
T ss_dssp CEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSS
T ss_pred CCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCC
Confidence 14899999998 79999998 889999999999999999998 54554444332100 1579999999998 5688
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
|+|++++++++ .+.+.+....++. .+..+.+...+ . .+++ +..+.+.+.++.
T Consensus 222 ~~g~l~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~---~-~~~l--~~~~~~~~~~~~ 273 (359)
T 1svv_A 222 GEALIILNDAL--KPNARHLIKQRGA--------------------LMAKGWLLGIQ---F-EVLM--KDNLFFELGAHS 273 (359)
T ss_dssp CEEEEECSGGG--CTTHHHHHHHTTC--------------------CCTTTHHHHHH---H-HHHT--STTHHHHHHHHH
T ss_pred ceEEEEEcccH--HHHHHHHHhcCCc--------------------ccccchhhHHH---H-HHHH--hhhhHHHHHHHH
Confidence 88999998877 3332211100000 00011111111 1 1222 334567788888
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+++++++.+.| +.++++++.+. ...+.+... ..++.+.|.+++||.+.+. . +
T Consensus 274 ~~~~~~l~~~L-~~~~~~~~~~~----~~~~~~~~~-------------------~~~~~~~l~~~~gi~v~~~-~---~ 325 (359)
T 1svv_A 274 NKMAAILKAGL-EACGIRLAWPS----ASNQLFPIL-------------------ENTMIAELNNDFDMYTVEP-L---K 325 (359)
T ss_dssp HHHHHHHHHHH-HHTTCCBSSCC----SSSEECBEE-------------------EHHHHHHHTTTEECEEEEE-E---T
T ss_pred HHHHHHHHHHh-ccCCeEEccCC----ccceEEEEc-------------------CHHHHHHHHHhcCEEEEec-c---c
Confidence 99999999999 56788877553 222322221 1368888877669998311 0 0
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. .++++||++++.++++|+++++++|++++.+
T Consensus 326 --~------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 326 --D------------------------GTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp --T------------------------TEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred --C------------------------CCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 0 1478999999999999999999999987643
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=259.13 Aligned_cols=343 Identities=10% Similarity=0.062 Sum_probs=235.7
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE-eCChHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF-CGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif-t~sGttaal~ 154 (625)
++.+|+.+.+.++.|+.|.+++.+.. +.....+..+....+..+++++++++++|++++++|+| | +|+++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t-~g~t~al~ 111 (398)
T 2fyf_A 38 KPRDGRFGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGN-GGATAFWD 111 (398)
T ss_dssp SCSSCBCCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEE-TCHHHHHH
T ss_pred ccCCccccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeC-CchhHHHH
Confidence 34567888888888999999886521 11110112234456788999999999999974347888 8 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH-HHHHc--CCeEEEEecCCCCCCCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL-SWRQS--LAEVVEIGLDDNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~--G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~ 231 (625)
.++.++ +++| +++++..+|..... ..... |++++.++++.+...+. .++
T Consensus 112 ~~~~~l---------------~~~g---v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~----- 163 (398)
T 2fyf_A 112 AAAFGL---------------IDKR---SLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-----QTD----- 163 (398)
T ss_dssp HHHHHT---------------CSSC---EEEEECSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-----CCC-----
T ss_pred HHHHHh---------------cCCC---eEEEeCCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-----ccc-----
Confidence 988876 4554 23335555533221 23444 88999999873323332 133
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
+++++|++++++|+||.+.|+++|.++ +|+++|+|++++.+..++++. ++|++++|+||++|+|+|+|++++
T Consensus 164 ~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-----~~di~~~s~sK~~~~~gg~g~l~~ 235 (398)
T 2fyf_A 164 PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-----ETDAYYFAPQKNFASDGGLWLAIM 235 (398)
T ss_dssp TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-----GCSEEEECTTSTTCSCSSEEEEEE
T ss_pred CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-----cCcEEEEecCcccCCCCceEEEEE
Confidence 579999999999999999999999887 899999999999988777653 479999999999998877999999
Q ss_pred eccccccCCCC---------CcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcC-HHH
Q 043646 312 SKALYQLGSSP---------PSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIG-YEV 379 (625)
Q Consensus 312 ~~~~~~l~~~~---------p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g-~~~ 379 (625)
++++.. .+. +.+..++. ...........+++++.++. .++++.+ ...| .+.
T Consensus 236 ~~~~~~--~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~t~~~~~~~a~~~al~~~--~~~g~~~~ 298 (398)
T 2fyf_A 236 SPAALS--RIEAIAATGRWVPDFLSLPI-------------AVENSLKNQTYNTPAIATLALLAEQIDWL--VGNGGLDW 298 (398)
T ss_dssp CHHHHH--HHHHHHHTTCCCCGGGCHHH-------------HHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHTSHHH
T ss_pred CHHHHH--HhhcccccCCCCCcEEehHH-------------HhhhcccCCCCCCCCHHHHHHHHHHHHHH--HHccCHHH
Confidence 988732 221 11111110 00000012344677766543 3445443 3345 888
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
+.++.+++++++.+.|+++++++++.+.+..+.+ ++.|.+.. +++..++.+.|.+ .||.+++|
T Consensus 299 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~L~~-~gI~v~~g 362 (398)
T 2fyf_A 299 AVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD---------------DVDAGTVAKILRA-NGIVDTEP 362 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT---------------TSCHHHHHHHHHH-TTCBCCSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCC---------------CCCHHHHHHHHHH-CCcEEecC
Confidence 9999999999999999988899987521112455 56665522 2346789998866 59999875
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
... + .++++|||++.+++++|+++++++|++++.+
T Consensus 363 ~~~----------~-------------------~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 363 YRK----------L-------------------GRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp CTT----------T-------------------CSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccc----------C-------------------CCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 210 0 1478999999999999999999999988654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=249.71 Aligned_cols=334 Identities=13% Similarity=0.069 Sum_probs=238.3
Q ss_pred ccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCC
Q 043646 69 FDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGA 147 (625)
Q Consensus 69 ~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~s 147 (625)
+..+.| +..++|+.+... ++++.+.+++.+.+.....+| .....++++++++++|++++ +|++| +
T Consensus 10 ~~~~~~-~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~l~~~la~~~~~~~~-~i~~~-~ 75 (354)
T 3ly1_A 10 FTAPST-DNPIRINFNENPLGMSPKAQAAARDAVVKANRYA-----------KNEILMLGNKLAAHHQVEAP-SILLT-A 75 (354)
T ss_dssp CCCCCS-SSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCC-----------HHHHHHHHHHHHHHTTSCGG-GEEEE-S
T ss_pred ccCCCC-CceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCC-----------CCchHHHHHHHHHHhCCChH-HEEEe-C
Confidence 444545 467888876544 467899999988775322211 12457899999999998766 89998 7
Q ss_pred hHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHH
Q 043646 148 GTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLEL 227 (625)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~ 227 (625)
|+++++..++.++ +++||+ |+++.+.|+++...++..|++++.++.++++.+|+++|++++++
T Consensus 76 g~~~a~~~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 138 (354)
T 3ly1_A 76 GSSEGIRAAIEAY---------------ASLEAQ--LVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA 138 (354)
T ss_dssp HHHHHHHHHHHHH---------------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHH---------------hCCCCe--EEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence 8999999998877 478885 89999999999888999999999999988889999999999983
Q ss_pred hhhCCCCeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccc---cCCC-CCCC-CCcEEEEcCCCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKI---NLRS-RNID-GYDAIFLATHKFL 300 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~i---d~~~-~~~~-~~D~v~~S~hK~l 300 (625)
. +++++|++++++||||.+.|.++|.++++. +|+++|+|++++.....- .... .... +.++++.|+||++
T Consensus 139 ~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 215 (354)
T 3ly1_A 139 Y---SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH 215 (354)
T ss_dssp C---SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT
T ss_pred C---CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc
Confidence 1 379999999999999999999988888887 999999999987432211 1000 0111 4468889999999
Q ss_pred CCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|.| .++|++++++++.. .+... ...++++......+ .+.+ ......+.
T Consensus 216 g~~G~r~G~~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~a~-~~~l-~~~~~~~~ 264 (354)
T 3ly1_A 216 AMAGMRVGYAVAHPTVIA--LMGRY---------------------------VAGEKINFSGVDAA-LASM-NDSAFITY 264 (354)
T ss_dssp CCGGGCCEEEECCHHHHH--HHGGG---------------------------TTCSCCCHHHHHHH-HHHT-TCHHHHHH
T ss_pred cChhhhheeeecCHHHHH--HHHHh---------------------------cCCCCCCHHHHHHH-HHHh-cCHHHHHH
Confidence 734 35799998877622 11110 01123333332211 1111 12233567
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
+.++.+.+++++.+.|.++ +++++.+ .+.++ +...+. +..++.+.|.+ +||.++ |.
T Consensus 265 ~~~~~~~~~~~l~~~l~~~-~~~~~~~----~~~~~-~~~~~~----------------~~~~~~~~l~~-~gi~v~-g~ 320 (354)
T 3ly1_A 265 SKKSNDVSRQILLKALEDL-KLPYLPS----EGNFV-FHQLVV----------------PLKDYQTHMAD-AGVLIG-RA 320 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCCC----CSSEE-EEECSS----------------CHHHHHHHHHH-TTEECC-CC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeECCC----CceEE-EEECCC----------------CHHHHHHHHHH-CCEEEe-ec
Confidence 7788888889999988776 6665533 23343 333321 25688888865 799998 76
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+|. .++++||+++ +++|+++++++|++++++.
T Consensus 321 ~~~-----------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 321 FPP-----------------------------ADNWCRISLG---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp CTT-----------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHTT
T ss_pred CCC-----------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHhh
Confidence 653 2489999987 8999999999999988753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=253.05 Aligned_cols=340 Identities=13% Similarity=0.082 Sum_probs=240.3
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaa 152 (625)
+..+.|..+... +.|+.|.+++.+.+.... + .+ +....++.+++++++++++| ++++ +|++| +|++++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~--~y--~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~~a 102 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI---Y--GY--TTRPDSYNESIVNWLYRRHNWKIKSE-WLIYS-PGVIPA 102 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC---C--CC--BCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhCCC---C--CC--CCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEc-CChHHH
Confidence 456677665544 567899999988875311 1 11 11236788899999999999 5555 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CC--CCCCHHHHHHHHHHh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DN--GLLDIEALRSQLELY 228 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~--~~ld~~~L~~~l~~~ 228 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++++ .+ +.+|+++|+++++
T Consensus 103 ~~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-- 163 (391)
T 4dq6_A 103 ISLLINEL---------------TKANDK--IMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK-- 163 (391)
T ss_dssp HHHHHHHH---------------SCTTCE--EEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT--
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh--
Confidence 98888877 468885 9999999999998899999999999987 33 3589999999987
Q ss_pred hhCCCCeEEEEecccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC--CCCcEEEEcCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI--DGYDAIFLATHKF 299 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~--~~~D~v~~S~hK~ 299 (625)
+ +++|++++++||||.+ .++++|+++|++||+++|+|++++... ....+..+.. .+..+++.|+||+
T Consensus 164 ---~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~ 239 (391)
T 4dq6_A 164 ---D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKT 239 (391)
T ss_dssp ---T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHH
T ss_pred ---c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhh
Confidence 4 8999999999999999 558889999999999999999987632 2223332210 0223788899999
Q ss_pred CCCCC-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 300 LGGPG-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 300 lggp~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
+|.|+ ++|++++++ ++.. .+.+ .......++++..+...+...+. ......
T Consensus 240 ~g~~G~r~G~~~~~~~~~~~--~~~~------------------------~~~~~~~~~~~~~~~~a~~~~l~-~~~~~~ 292 (391)
T 4dq6_A 240 FNIAGLQSSYVVLPDEKDYK--LLDD------------------------AFTRIDIKRNNCFSLVATEASYN-NGESWL 292 (391)
T ss_dssp HTCGGGCCEEEECCSHHHHH--HHHH------------------------HHHHTTCCCCCHHHHHHHHHHHH-HCHHHH
T ss_pred ccCcccceEEEEeCCHHHHH--HHHH------------------------HHHhhcCCCCCHHHHHHHHHHHh-chHHHH
Confidence 97443 479998876 5421 1100 01111233445444322221121 111225
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeee
Q 043646 378 EVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQAR 456 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~ 456 (625)
+.+.++.+.+++++.+.|.+ +|+++++.+. .+.+.+...+.. +.+..++.+.|.+++||.++
T Consensus 293 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~gi~v~ 355 (391)
T 4dq6_A 293 ESFLEYLESNIDFAIKYINENMPKLKVRKPE----GTYLLWVDFSAL-------------GLSDEELESILVQKGKVALN 355 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSEECCCS----BSSEEEEECGGG-------------CCCHHHHHHHHHHTTCEECE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEecCCC----ccEEEEEEhhhc-------------CCCHHHHHHHHHHhCCEEee
Confidence 67778888889999999987 7899887653 345544433321 23467899988776699999
Q ss_pred cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 457 GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 457 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+|..|+.+ .++++||+++ ++++++++++++|++++
T Consensus 356 ~g~~~~~~---------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 356 QGNSFGIG---------------------------GSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EGGGGCTT---------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred CchhhCCC---------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 98877521 2489999998 68999999999999875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-27 Score=247.63 Aligned_cols=328 Identities=13% Similarity=0.023 Sum_probs=233.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLP--FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
+..++|+.+... +.|+.|.+++.+.+.. ....+.. ...++++++++++|++..++|++| +|++++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-----------~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a 97 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP-----------SSEALRAKLKEVMQVPAGMEVLLG-NGSDEI 97 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC-----------CHHHHHHHHHHHHTCCTTCEEEEE-EHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCCcceEEEc-CCHHHH
Confidence 567888876654 4678999999887742 1111111 246789999999998333389998 789999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||+ |++..+.|+++...++..|++++.+++++++.+|+++|++++++ .
T Consensus 98 ~~~~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~ 156 (367)
T 3euc_A 98 ISMLALAA---------------ARPGAK--VMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE----H 156 (367)
T ss_dssp HHHHHHHT---------------CCTTCE--EEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH----H
T ss_pred HHHHHHHH---------------cCCCCE--EEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc----c
Confidence 99988876 578885 88889999998888888999999999998889999999999984 2
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
++++|++++++||||.+.| +++|+++|++| |+++|+|++++.....-........+.++++.|++|+ +.|+ ++
T Consensus 157 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~ 235 (367)
T 3euc_A 157 QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRL 235 (367)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCE
T ss_pred CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCc
Confidence 7999999999999999965 67788889999 9999999997742211111111112456888999999 5443 47
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
|++++++++.. .+.+. ....+++...... +...+ ......+.+.++.+.
T Consensus 236 G~~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~a-~~~~l-~~~~~~~~~~~~~~~ 284 (367)
T 3euc_A 236 GYVAGDPQWLE--QLDKV---------------------------RPPYNVNVLTEAT-ALFAL-EHVAVLDEQAAQLRA 284 (367)
T ss_dssp EEEEECHHHHH--HHGGG---------------------------CCSSCCCHHHHHH-HHHHH-TTHHHHHHHHHHHHH
T ss_pred eeeeeCHHHHH--HHHHh---------------------------CCCCCCCHHHHHH-HHHHh-cCHHHHHHHHHHHHH
Confidence 99999877622 11110 0011233333221 12222 122335677888888
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.++|++++..+ .+.++ +...+ +..++.+.|. ++||.+++|..|...
T Consensus 285 ~~~~l~~~l~~~~g~~~~~~----~~~~~-~~~~~-----------------~~~~l~~~l~-~~gi~v~~~~~~~~~-- 339 (367)
T 3euc_A 285 ERSRVAEGMAAHGGVTVFPS----AANFL-LARVP-----------------DAAQTFDRLL-ARKVLIKNVSKMHPL-- 339 (367)
T ss_dssp HHHHHHHHHHTSTTCEECCC----SSSEE-EEECS-----------------CHHHHHHHHH-TTTEECEECGGGCGG--
T ss_pred HHHHHHHHHHhCCCcEECCC----CCeEE-EEECC-----------------CHHHHHHHHH-HCCeEEEECCccCCC--
Confidence 99999999999999986543 23333 33322 2567888885 579999988776411
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++|||++ +++|+++++++|+++++
T Consensus 340 -------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 340 -------------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp -------------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -------------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 2489999987 99999999999998753
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=255.09 Aligned_cols=344 Identities=11% Similarity=0.102 Sum_probs=235.4
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
+.|+++...+ +.++.+.+++.+.+.....+++. +...+.......++++.+++++|.+ ++|+++ +|+++++ .+
T Consensus 49 i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~-sG~~a~~-~~ 122 (401)
T 2bwn_A 49 TVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQKE--AALVFS-SAYNAND-AT 122 (401)
T ss_dssp EECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTCS--EEEEES-CHHHHHH-HH
T ss_pred EEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCCC--cEEEEC-CcHHHHH-HH
Confidence 4577665533 23557999998888654444442 1111223456778999999999973 378886 8888433 33
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
..++. .+.+||. |+++.++|+++..+++..|++++.++.+ |+++|++++++. ..+++++
T Consensus 123 ~~~l~-------------~~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~-~~~~~~~ 181 (401)
T 2bwn_A 123 LSTLR-------------VLFPGLI--IYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAAD-DPAAPKL 181 (401)
T ss_dssp HHHHH-------------HHSTTCE--EEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHS-CTTSCEE
T ss_pred HHHHh-------------cCCCCCE--EEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhh-ccCCceE
Confidence 33221 1357774 9999999999999999999999999975 789999998741 1136899
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc---cC-CCCCC-CCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI---NL-RSRNI-DGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i---d~-~~~~~-~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
|++++++||||.+.|+++|.++|++||+++|+|++|+.|.... .+ ...+. +..|+++.|++|+|+.|+ |+++.
T Consensus 182 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~ 259 (401)
T 2bwn_A 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAA 259 (401)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEE
T ss_pred EEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC--CEEec
Confidence 9999999999999999999999999999999999999653211 00 00110 146899999999998655 88888
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
++++.. .+... .....+..++++.... +.++++++ +..|.+.+.++.+.++++
T Consensus 260 ~~~~~~--~l~~~----------------------~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~ 313 (401)
T 2bwn_A 260 SARMVD--AVRSY----------------------APGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKV 313 (401)
T ss_dssp CHHHHH--HHHHH----------------------CHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHHh----------------------CcCceecCCCCHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHH
Confidence 766521 11000 0012234455553322 23455544 444567888899999999
Q ss_pred HHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
+.+.|.++ +++++.+ +++++.+.+..+ .+..++.+.|.+++||.++++..++.+.
T Consensus 314 l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~L~~~~gi~v~~~~~~~~~~----- 368 (401)
T 2bwn_A 314 LKMRLKAL-GMPIIDH----GSHIVPVVIGDP---------------VHTKAVSDMLLSDYGVYVQPINFPTVPR----- 368 (401)
T ss_dssp HHHHHHHH-TCCBCCC----SSSCEEEECCCH---------------HHHHHHHHHHHHHHCEECCEECTTTSCT-----
T ss_pred HHHHHHHC-CCcccCC----CCCeEEEEeCCh---------------HHHHHHHHHHHhcCCEEEeecCCCCCCC-----
Confidence 99999877 7777654 345666654211 1245788888656799998776443110
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+++||+++.+++++|+++++++|++++++
T Consensus 369 ---------------------~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 369 ---------------------GTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp ---------------------TCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred ---------------------CCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 1268999999999999999999999987643
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-27 Score=249.62 Aligned_cols=323 Identities=12% Similarity=0.000 Sum_probs=234.2
Q ss_pred CceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+..++|+.+.. .++++.|.+++.+.+.....++... ..++++++++++|++++ +|++| +|+++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~v~~~-~g~~~a~~ 96 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNE-NIIIG-AGSDQVIE 96 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHH
Confidence 46788886644 3567899999998876443333321 13689999999998766 89998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CCCCCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++.++ +++||+ |+++.+.|+++...++..|++++.+++ +.++ +|+++|+++++ ++
T Consensus 97 ~~~~~l---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~-----~~ 153 (365)
T 3get_A 97 FAIHSK---------------LNSKNA--FLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK-----DE 153 (365)
T ss_dssp HHHHHH---------------CCTTCE--EEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT-----TT
T ss_pred HHHHHH---------------hCCCCE--EEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC-----CC
Confidence 888877 578885 999999999998889999999999998 5677 99999999987 58
Q ss_pred CeEEEEecccCccccccCHHHHHHHHH--HcCCEEEEeccCc------CCCccccCCCC-CCCCCcEEEEcCCCCCCCCC
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLH--QYGGFACFDFAAS------GPYVKINLRSR-NIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~--~~g~~vivD~A~~------~g~~~id~~~~-~~~~~D~v~~S~hK~lggp~ 304 (625)
+++|++++++||||.+.|+++|.++++ ++|+++++|++++ .+..+.+.... ...+.++++.|+||++|.|+
T Consensus 154 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 233 (365)
T 3get_A 154 IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG 233 (365)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT
T ss_pred CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc
Confidence 999999999999999999999999888 6799999999987 32222222111 11245788899999997444
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
++|++++++++.. .+.. .....+++......+ ... +......+.+.++
T Consensus 234 ~r~G~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~-~~~-l~~~~~~~~~~~~ 282 (365)
T 3get_A 234 LRIGYGIANANIIS--AFYK---------------------------LRAPFNVSNLALKAA-VAA-MDDDEFTEKTLEN 282 (365)
T ss_dssp TCCEEEEECHHHHH--HHHH---------------------------HSCTTCSCHHHHHHH-HHH-HTCHHHHHHHHHH
T ss_pred hheEEEEcCHHHHH--HHHH---------------------------hcCCCCcCHHHHHHH-HHH-hCCHHHHHHHHHH
Confidence 5899999877622 1100 000112333332211 111 1122345677888
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+.+++++.+.|.++ ++++..+. +.++ +...+. . +..++.+.|.+ +||.+++|..|+
T Consensus 283 ~~~~~~~l~~~l~~~-g~~~~~~~----~~~~-~~~~~~--------------~-~~~~~~~~l~~-~gi~v~~g~~~~- 339 (365)
T 3get_A 283 NFSQMELYKEFAKKH-NIKIIDSY----TNFI-TYFFDE--------------K-NSTDLSEKLLK-KGIIIRNLKSYG- 339 (365)
T ss_dssp HHHHHHHHHHHHHHT-TCEECCCS----SSEE-EEECSS--------------S-CHHHHHHHHHT-TTEECEECGGGT-
T ss_pred HHHHHHHHHHHHHhC-CCEECCCC----CeEE-EEECCC--------------C-CHHHHHHHHHH-CCEEEEECccCC-
Confidence 888899999999887 78876542 3443 333322 1 36788888866 699999887653
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
++++||+++ +++|+++++++|++++
T Consensus 340 -----------------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 -----------------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -----------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 288999997 8999999999999875
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=250.13 Aligned_cols=342 Identities=13% Similarity=0.040 Sum_probs=235.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~ 154 (625)
..++|+.+... +.++.+.+++.+.+.... . .|.......++.+++.+++.+.+|.+. .++|++| +|+++++.
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~-~g~~~a~~ 104 (388)
T 1j32_A 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGK----T-RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVT-NGGKQSIF 104 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE-SHHHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEc-CCHHHHHH
Confidence 45666655443 356788888887774310 0 111112245666677777777777532 2389998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++ +++||+ |+++.++|+++...++..|++++.++.+. ++.+|+++|+++++ +
T Consensus 105 ~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-----~ 162 (388)
T 1j32_A 105 NLMLAM---------------IEPGDE--VIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT-----P 162 (388)
T ss_dssp HHHHHH---------------CCTTCE--EEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC-----T
T ss_pred HHHHHh---------------cCCCCE--EEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC-----c
Confidence 988877 468885 99999999999888888999999999875 46789999999987 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc----ccCCCCCC--CCCcEEEEcCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK----INLRSRNI--DGYDAIFLATHKFLGGP 303 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~----id~~~~~~--~~~D~v~~S~hK~lggp 303 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++..... ..+..+.. .+.|+++.|+||++|.|
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 242 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc
Confidence 7899999999999999965 899999999999999999998754321 12222110 24689999999999634
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++++++. +.+.+. ......+++++.+. ++.+.+.......+.+.+
T Consensus 243 G~r~G~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l~~~~~~~~~~~~ 294 (388)
T 1j32_A 243 GWRVGFLAGPVPLV--KAATKI------------------------QGHSTSNVCTFAQY--GAIAAYENSQDCVQEMLA 294 (388)
T ss_dssp TTCCEEEECCHHHH--HHHHHH------------------------HHTTTCSCCHHHHH--HHHHHHHSCSHHHHHHHH
T ss_pred ccceEEEEeCHHHH--HHHHHH------------------------HhhcccCCCHHHHH--HHHHHHhCCcHHHHHHHH
Confidence 2 289999988762 111110 00111223333222 222222111123566778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|+++|++++..+. .+.+.+...+. .+.+..++.+.|.+++||.+++|..|.
T Consensus 295 ~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~g~~~~ 357 (388)
T 1j32_A 295 AFAERRRYMLDALNAMPGLECPKPD----GAFYMFPSIAK-------------TGRSSLDFCSELLDQHQVATVPGAAFG 357 (388)
T ss_dssp HHHHHHHHHHHHHHTCTTCBCCCCC----BTTEECCBCGG-------------GTCCHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHHHHHHHHHHhhCCCCcccCCC----eeEEEEEecCC-------------CCCCHHHHHHHHHHhCCEEEeChhhhC
Confidence 8888899999999988888876553 34443332221 023467888888766799999887654
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +++++++++++.|++++++
T Consensus 358 -----------------------------~~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 358 -----------------------------ADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp -----------------------------CTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 1378999997 6999999999999988764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=249.83 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=231.1
Q ss_pred cchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 88 RSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
..++.+.+++.+.+..+. +++. +....+......++++++++++|.+ + .+++ ++|+++++ .++.++
T Consensus 78 ~~~~~v~~a~~~~~~~~~~~~~~---~~~~~G~~~~~~~l~~~la~~~g~~-~-~i~~-~sGs~a~~-~al~~l------ 144 (427)
T 2w8t_A 78 TFDPDVIAAGKEALEKFGSGTCG---SRMLNGTFHDHMEVEQALRDFYGTT-G-AIVF-STGYMANL-GIISTL------ 144 (427)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCS---CTTTTCCCHHHHHHHHHHHHHHTCS-E-EEEE-SCHHHHHH-HHHHHH------
T ss_pred CCCHHHHHHHHHHHHHhCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC-c-eEEe-cCcHHHHH-HHHHHh------
Confidence 366889999988775421 1211 1112223466788999999999975 2 4555 48887644 445554
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT 246 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T 246 (625)
+++||. |+++..+|.++...++..|++++.++. +|+++|++++++.. ..++++|++++++|+|
T Consensus 145 ---------~~~gd~--vl~~~~~h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~-~~~~~~v~~~~~~n~t 207 (427)
T 2w8t_A 145 ---------AGKGEY--VILDADSHASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLP-KEPAKLVVLEGVYSML 207 (427)
T ss_dssp ---------SCTTCE--EEEETTCCHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSC-SSSCEEEEEESEETTT
T ss_pred ---------cCCCCE--EEECCcccHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhcc-CCCCeEEEEcCCCCCC
Confidence 467874 999999999999999999999998873 58999999998410 0178999999999999
Q ss_pred ccccCHHHHHHHHHHcCCEEEEeccCcCCCcc---------ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVK---------INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 247 G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
|.+.|+++|.++|++||+++|+|++|+.+... .++. .++|+++.|+||++| +.| |++++++++.
T Consensus 208 G~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~----~~~di~~~s~sK~~g-~~g-G~v~~~~~l~- 280 (427)
T 2w8t_A 208 GDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE----GQIDFVVGTFSKSVG-TVG-GFVVSNHPKF- 280 (427)
T ss_dssp TEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT----TCCSEEEEESSSTTC-SCC-EEEEECCTTG-
T ss_pred CCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC----cCCcEEEecchhhhc-cCC-CEEEeCHHHH-
Confidence 99999999999999999999999999977654 2332 267999999999998 555 9999988772
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhh-cCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+.+.+. ...+ ..++++..+.. .++++.+ + ..+.+.++.+.+++++.+.
T Consensus 281 -~~l~~~------------------------~~~~~~~~~~~~~~~aa~~~al~~~--~--~~~~~~~~~~~~~~~l~~~ 331 (427)
T 2w8t_A 281 -EAVRLA------------------------CRPYIFTASLPPSVVATATTSIRKL--M--TAHEKRERLWSNARALHGG 331 (427)
T ss_dssp -GGGGGT------------------------CHHHHSSCCCCHHHHHHHHHHHHHH--T--SCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHh------------------------cccccccCCCCHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHHHHHHH
Confidence 222111 0001 12333433332 2344443 2 2467788888899999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|.++ ++.+..+. ..++++.+.+... .....+.+.|.+ .||.+++|..|+.+.
T Consensus 332 L~~~-g~~~~~~~--~~~~~~~~~~~~~---------------~~~~~l~~~L~~-~Gi~v~~~~~~~~~~--------- 383 (427)
T 2w8t_A 332 LKAM-GFRLGTET--CDSAIVAVMLEDQ---------------EQAAMMWQALLD-GGLYVNMARPPATPA--------- 383 (427)
T ss_dssp HHHH-TCEESCSS--CCSSEEEEEESSH---------------HHHHHHHHHHHH-TTEECEEECTTTSCT---------
T ss_pred HHHc-CCcccCCC--CCCCEEEEEECCH---------------HHHHHHHHHHHH-CCeEEeeeCCCCCCC---------
Confidence 9877 77776432 1456666655321 124578888866 599999887665221
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++||+++.+++++|+++++++|++++.+.
T Consensus 384 -----------------~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 384 -----------------GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp -----------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 14789999999999999999999999987664
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=251.83 Aligned_cols=394 Identities=14% Similarity=0.070 Sum_probs=252.5
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchh
Q 043646 36 CSEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYV 115 (625)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~ 115 (625)
++.+.....+| ..+..+.+..+++.-- .+..++ ...+||+ +.+....+.+.+++.+.+.. .+|... ...
T Consensus 33 ~~~~~~~~~lp-~~~e~~~~~~~~~l~~-~~~~~~-----~~~~~lg-~~~~~~~p~v~~~~~~~~~~--~~~~~~-~~~ 101 (474)
T 1wyu_B 33 EHLREVPPRLP-EVDELTLVRHYTGLSR-RQVGVD-----TTFYPLG-SCTMKYNPKLHEEAARLFAD--LHPYQD-PRT 101 (474)
T ss_dssp GGBCSSCCCCC-CCCHHHHHHHHHHHHT-TCCCTT-----TSCCCBT-TTCCCCCCHHHHHHHHTTSS--CCTTSC-GGG
T ss_pred HHhccCCCCCC-CCCHHHHHHHHHHHHh-CCCCcc-----cCccccc-cccccCCHHHHHHHHHHHHh--cCCCCc-hhh
Confidence 33333344556 4555566666665442 111111 2457888 45555556677777665322 233221 114
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH-HHHHhcccccchhhhhhhhccCCCC---ceEEEEcCCCC
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR-LQEVMGITVPSIMRDKLITSLRDEE---RWVVFLGPYEH 191 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~-l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h 191 (625)
+.+..++..++++++++++|.+. .++++++|+.+ +.. +..+... ..++|| +..|+++...|
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a-~~~al~~~~~~------------~~~~Gd~~~r~~Vlv~~~~h 166 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHG-ELTGILIIRAY------------HEDRGEGRTRRVVLVPDSAH 166 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHH-HHHHHHHHHHH------------HHHTTCTTTCCEEEEETTSC
T ss_pred ChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHH-HHHHHHHHHHH------------HHhcCCccCCCEEEEeCCcC
Confidence 56788999999999999999863 36677555544 443 2222110 013454 23599999999
Q ss_pred chhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-cCHHHHHHHHHHcCCEEEEec
Q 043646 192 HSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-~~l~~I~~la~~~g~~vivD~ 270 (625)
+++..+++..|++++.|+++.++.+|+++|+++++ +++++|+++++ |+||.+ .|+++|+++||+||+++|+|+
T Consensus 167 ~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~-----~~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~De 240 (474)
T 1wyu_B 167 GSNPATASMAGYQVREIPSGPEGEVDLEALKRELG-----PHVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDG 240 (474)
T ss_dssp THHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS-----TTEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEG
T ss_pred hhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhC-----CCceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeC
Confidence 99998898899999999998889999999999997 57899999997 689998 799999999999999999999
Q ss_pred cCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCC-----CceEEEEeccccccCCCC-Cccc-CCceEEeecccccccc
Q 043646 271 AASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPG-----TPGILLISKALYQLGSSP-PSTC-GGGTVNYVNAFDEKDT 342 (625)
Q Consensus 271 A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~-----g~G~l~v~~~~~~l~~~~-p~~~-ggg~v~~~~~~~~~~~ 342 (625)
+++.+.. ..+...+ ++|++++|+||+|++|. ++|++++++++ ++.+. +... ++....+ .+.
T Consensus 241 a~~~~~~g~~~~~~~---g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l--~~~l~~~~~~~~g~~~~~--~~~---- 309 (474)
T 1wyu_B 241 ANLNAIMGWARPGDM---GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL--APYLPVPLVERGEEGFYL--DFD---- 309 (474)
T ss_dssp GGGGGTTTTCCHHHH---TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG--GGGCCSCEEEECSSCEEE--ECC----
T ss_pred chhhhhccCCCcccC---CCcEEEEeCccccccCCCCCCCCeEEEEEcHHH--HHhCCCCeeeccCCeeEe--ccc----
Confidence 9875543 2222223 68999999999999884 58999999987 33443 2211 1111100 000
Q ss_pred ccccchhhhhcCCChhHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 343 LYLEDIEERENGGTPQIVQMIRAALAFWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
......++..++.+.... .+++.++. ....+.+.+.++...+++++.+.|.++ ++++..+.. ....+.+.+ +
T Consensus 310 --~~~~~~~~~~~~~~~~~~-~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~-~ 382 (474)
T 1wyu_B 310 --RPKSIGRVRSFYGNFLAL-VRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK-GYRVPYDGP--SMHEFVAQP-P 382 (474)
T ss_dssp --CTTCCCCSSSTTSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCSSCSS--CCSCEEEBC-S
T ss_pred --CcccCcccccCcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcEecCCCC--cceEEEEEc-C
Confidence 000012233344454433 33344431 123345566888888999999999887 777633211 111122211 1
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP 501 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~ 501 (625)
. +.+..++++.|.+ +||.+. +..+. . ..++++||+++
T Consensus 383 ~--------------~~~~~~l~~~L~~-~Gi~~~-~~~~~----~-----------------------~~~~~lRis~~ 419 (474)
T 1wyu_B 383 E--------------GFRALDLAKGLLE-LGFHPP-TVYFP----L-----------------------IVKEALMVEPT 419 (474)
T ss_dssp T--------------TCCHHHHHHHHHH-TTCCCC-EESCS----T-----------------------TSTTCEEECCC
T ss_pred C--------------CCCHHHHHHHHHH-CCcccc-ccccc----c-----------------------ccCCEEEEEee
Confidence 1 2346789998876 599863 32221 0 01478999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 043646 502 YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 502 ~~~t~edid~ll~aL~~~~~~ 522 (625)
.++|++|+++++++|++++.+
T Consensus 420 ~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 420 ETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TTSCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=252.84 Aligned_cols=341 Identities=16% Similarity=0.099 Sum_probs=236.6
Q ss_pred EeccCCCCCc----chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 79 TYADHTASGR----SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~----~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
-|+|.++..+ .++.+.+++.+.+..+ .++... +.......+...++++++++++|.+ + .++++ +|+. ++.
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~~-~~~~~~-~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~-sGt~-a~~ 117 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQY-GFGMAS-VRFICGTQTIHKELEKDISEFLGTD-D-TILYS-SCFD-ANG 117 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHHH-CSCCCS-CCCCCCCBHHHHHHHHHHHHHHTCS-E-EEEES-CHHH-HHH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHHh-CCCCCC-cCccccCchHHHHHHHHHHHHHCCC-c-EEEEC-chHH-HHH
Confidence 3666655543 3588999988877542 222111 1111223456788999999999975 2 56665 7866 555
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~ 233 (625)
.++.++ +++||. |+++.++|+++...++..|++++.++. +|+++|++++++... ..+
T Consensus 118 ~~l~~~---------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 118 GLFETL---------------LGPEDA--IISDELNHASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp TTHHHH---------------CCTTCE--EEEETTCCHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCS
T ss_pred HHHHHh---------------cCCCCE--EEECCcccHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCC
Confidence 565555 478885 999999999999899999999999986 477899999885321 127
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC----CCC-CCCCcEEEEcCCCCCCCCCCceE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR----SRN-IDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~----~~~-~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+....+.. ..+ ..+.|+++.|+||+++|+.| |+
T Consensus 176 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~ 254 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GY 254 (399)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EE
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EE
Confidence 9999999999999999999999999999999999999997665332211 111 12679999999999997776 99
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
++.++++.. .+.... ......++++..+.. .++++.. . .+.+.+.++.++
T Consensus 255 ~~~~~~~~~--~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~ 306 (399)
T 3tqx_A 255 TSGHKEIIE--WLRNRS-----------------------RPYLFSNTVAPVIVATSLKVLELL--K-TEGPQLRKQLQE 306 (399)
T ss_dssp EEECHHHHH--HHHHHC-----------------------HHHHSSCCCCHHHHHHHHHHHHHH--H-HTHHHHHHHHHH
T ss_pred EEcCHHHHH--HHHHhC-----------------------cceeccCCCcHHHHHHHHHHHHHH--h-hccHHHHHHHHH
Confidence 999887732 111000 000112344444332 2333332 1 457788889999
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++++.+.|.++ ++++..+ .++++.+.+... .+..++.+.|.+ +||.+++++++..+.
T Consensus 307 ~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~l~~-~gi~v~~~~~~~~~~- 364 (399)
T 3tqx_A 307 NSRYFRAGMEKL-GFQLVPG----NHPIIPVMLGDA---------------QLATNMADHLLQ-EGIYVVGFSYPVVPM- 364 (399)
T ss_dssp HHHHHHHHHHHH-TCCBCCC----SSSEEEEEEECH---------------HHHHHHHHHHHH-TTEECCEECTTTSCT-
T ss_pred HHHHHHHHHHHc-CCCcCCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCCEEeeeCCCCCCC-
Confidence 999999999876 6666533 345655554321 124678888866 699999765443111
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||+++++++++|+++++++|++++++.
T Consensus 365 -------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 365 -------------------------GKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp -------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999988763
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=246.49 Aligned_cols=334 Identities=12% Similarity=0.033 Sum_probs=234.5
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..++|+.+... +.++.+.+++.+.+.... . .|.......++.+++.+++.+.+|. +++ +|++| +|++++
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~v~~~-~g~t~a 113 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE----V-KYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVT-NGAKQA 113 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC----C-CCCCTTCCHHHHHHHHHHHHHHHTCCCCGG-GEEEE-SHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEe-cCHHHH
Confidence 356788776654 456889999988774321 0 1111112344555555566555576 344 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 114 l~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 172 (389)
T 1o4s_A 114 LFNAFMAL---------------LDPGDE--VIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---- 172 (389)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC----
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc----
Confidence 99988877 467885 99999999999888888999999999875 45789999999887
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCCC-CCCCcEEEEcCCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK---INLRSRN-IDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~~-~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.| +++|+++|+++|+++|+|++++.+... .++..+. ..+.|+++.|+||++|.|
T Consensus 173 -~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 251 (389)
T 1o4s_A 173 -GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT 251 (389)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCG
T ss_pred -cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCc
Confidence 47899999999999999977 899999999999999999998865431 2222211 126799999999999734
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++++++.. .+.+. ......+++++.+. ++.+.+ + .+.+.+.+
T Consensus 252 G~r~G~l~~~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l--~-~~~~~~~~ 300 (389)
T 1o4s_A 252 GWRVGYLISSEKVAT--AVSKI------------------------QSHTTSCINTVAQY--AALKAL--E-VDNSYMVQ 300 (389)
T ss_dssp GGCCEEEECCHHHHH--HHHHH------------------------HHHHTCSCCHHHHH--HHHHHT--T-CCCHHHHH
T ss_pred ccceEEEEeCHHHHH--HHHHH------------------------hhhcccCCCHHHHH--HHHHHH--h-ccHHHHHH
Confidence 3 2799999887621 11100 01111233333222 222232 2 23677888
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|.++ ++++..+ ..+.+.+...+ .+..++.+.|.+++||.+++|..|.
T Consensus 301 ~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~----------------~~~~~l~~~l~~~~gi~v~~g~~f~ 359 (389)
T 1o4s_A 301 TFKERKNFVVERLKKM-GVKFVEP----EGAFYLFFKVR----------------GDDVKFCERLLEEKKVALVPGSAFL 359 (389)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCCCC----SBSSEEEEECS----------------SCHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHHHHHHHHHHHhc-CCeeecC----CcceEEEEeCC----------------CCHHHHHHHHHHHCCEEEeCchhcC
Confidence 8888899999999877 7766544 23555444332 1256788888656899999886654
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++. ++++++++++.|++++.
T Consensus 360 -----------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 360 -----------------------------KPGFVRLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp -----------------------------CTTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred -----------------------------CCCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 13789999983 89999999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=241.05 Aligned_cols=316 Identities=14% Similarity=0.051 Sum_probs=224.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+..++|+.+... ++++.+.+++.+.+......| .....++++.+++++|++++ +|++| +|+++++.
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~i~~t-~G~~~~l~ 82 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPED-NLMLV-RGIDECFD 82 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGG-GEEEE-SHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHH-HEEEe-CCHHHHHH
Confidence 568999988543 567889999988764321111 12356789999999999776 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +||+ |+++.+.|+++...++..|++++.+++++++.+|+++|+++ .++
T Consensus 83 ~~~~~~-----------------~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-------~~~ 136 (337)
T 3p1t_A 83 RISAEF-----------------SSMR--FVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV-------SRD 136 (337)
T ss_dssp HHHHHS-----------------TTSE--EEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC-------CTT
T ss_pred HHHHhc-----------------CCCe--EEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh-------cCC
Confidence 887653 6775 89999999999888888999999999988888999998764 368
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC--CCccccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG--PYVKINLRSRNIDGYDAIFLATHKFLGGP-GTPGILLI 311 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~--g~~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v 311 (625)
+++++++++||||.+.|+++|.++|+++++ +++|++++. +....... ..+.++++.|++|++|.| .++|++++
T Consensus 137 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~---~~~~~i~~~S~sK~~g~~G~r~G~~~~ 212 (337)
T 3p1t_A 137 DCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLA---YGENELVFRSFSKSYGLAGLRLGALFG 212 (337)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCC---CBTTEEEEEESSSTTCCTTTCCEEEEC
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccc---cCCCEEEEeeCchhccCcchheEEEEe
Confidence 999999999999999999999999999997 566999762 11111111 125678999999999734 34799998
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++++.. .+... ...++++..+... +..++ ......+...++...+++++
T Consensus 213 ~~~~~~--~l~~~---------------------------~~~~~~~~~~~~a-~~~~l-~~~~~~~~~~~~~~~~~~~l 261 (337)
T 3p1t_A 213 PSELIA--AMKRK---------------------------QWFCNVGTLDLHA-LEAAL-DNDRAREAHIAKTLAQRRRV 261 (337)
T ss_dssp CHHHHH--HHHTT---------------------------SCTTCSCHHHHHH-HHHHH-TCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHH--HHHhh---------------------------cCCCCCCHHHHHH-HHHHh-CCHHHHHHHHHHHHHHHHHH
Confidence 887632 11110 0112333333221 12222 12122445556666678888
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
.+.|.++ ++++..+ .++++.+.... ..++.+.|. ++||.+++|..|+
T Consensus 262 ~~~L~~~-g~~~~~~----~~~~~~~~~~~------------------~~~~~~~l~-~~gi~v~~g~~~~--------- 308 (337)
T 3p1t_A 262 ADALRGL-GYRVASS----EANFVLVENAA------------------GERTLRFLR-ERGIQVKDAGQFG--------- 308 (337)
T ss_dssp HHHHHHT-TCCBCCC----SSSEEEEECTT------------------THHHHHHHH-HTTEECEEGGGGT---------
T ss_pred HHHHHHC-cCEECCC----CCeEEEEEcCC------------------HHHHHHHHH-HCCeEEEECccCC---------
Confidence 8888877 6766544 23444443321 346777774 5799999988765
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++|||++ +++|+++++++|+++.+
T Consensus 309 --------------------~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 309 --------------------LHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp --------------------CCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred --------------------CCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 2489999997 89999999999998754
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=248.44 Aligned_cols=336 Identities=15% Similarity=0.091 Sum_probs=232.0
Q ss_pred EeccCCCCCc----chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 79 TYADHTASGR----SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~----~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
.|+|.++..+ .++.+.+++.+.+.. +++.... +.+.........++++.+++++|.+ + .+++ ++|+.+ +.
T Consensus 46 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~-~~~~~g~~~~~~~l~~~la~~~g~~-~-~i~~-~sGs~a-~~ 119 (401)
T 1fc4_A 46 HVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMAS-VRFICGTQDSHKELEQKLAAFLGME-D-AILY-SSCFDA-NG 119 (401)
T ss_dssp EEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCS-CHHHHCCBHHHHHHHHHHHHHHTCS-E-EEEE-SCHHHH-HH
T ss_pred cEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCC-CCcccCCcHHHHHHHHHHHHHhCCC-c-EEEe-CChHHH-HH
Confidence 4666555433 378899999887743 2222211 1122112456788999999999986 3 5555 488774 55
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~ 233 (625)
.++.++ +++||. |+++.++|.++...++..|++++.++. +|+++|++++++... ..+
T Consensus 120 ~~~~~~---------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 120 GLFETL---------------LGAEDA--IISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp TTHHHH---------------CCTTCE--EEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHH---------------cCCCCE--EEEcchhHHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCC
Confidence 565655 467874 999999999988888888999998873 489999999974211 116
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc-c--------ccCCCCCCCCCcEEEEcCCCCCCCCC
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-K--------INLRSRNIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~-~--------id~~~~~~~~~D~v~~S~hK~lggp~ 304 (625)
+++|++++++||||.+.|+++|.++|++||+++|+|++++.+.. + .++. .+.|+++.|+||+++++.
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~----~~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM----GRVDIITGTLGKALGGAS 253 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT----TCCSEEEEESSSTTCSSS
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCC----cCCcEEEecchhhccCCC
Confidence 89999999999999999999999999999999999999975553 2 2222 157999999999995566
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~ 382 (625)
| |++++++++.. .+.+.. ....+ .++++.... +.++++.. +. .+.+.+
T Consensus 254 g-G~~~~~~~~~~--~l~~~~----------------------~~~~~-~~~~~~~~~~a~~~~l~~~--~~--~~~~~~ 303 (401)
T 1fc4_A 254 G-GYTAARKEVVE--WLRQRS----------------------RPYLF-SNSLAPAIVAASIKVLEMV--EA--GSELRD 303 (401)
T ss_dssp C-EEEEECHHHHH--HHHHHC----------------------HHHHH-SCCCCHHHHHHHHHHHHHH--HT--CHHHHH
T ss_pred C-EEEEcCHHHHH--HHHHhC----------------------cCcee-CCCCCHHHHHHHHHHHHHH--hc--CHHHHH
Confidence 6 99999877622 111000 00111 223333332 23344443 21 356778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+++++++.+.|.++ +++++.+ .+.++.+.+... .+..++.+.|.+ +||.+++|..|+
T Consensus 304 ~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~l~~~l~~-~gi~v~~~~~~~ 362 (401)
T 1fc4_A 304 RLWANARQFREQMSAA-GFTLAGA----DHAIIPVMLGDA---------------VVAQKFARELQK-EGIYVTGFFYPV 362 (401)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCCS----SSSEEEEEEECH---------------HHHHHHHHHHHH-TTEECCEECTTS
T ss_pred HHHHHHHHHHHHHHHc-CCcccCC----CCCEEEEEcCCh---------------HHHHHHHHHHHH-CCcEEeeecCCC
Confidence 8888899999999877 6666522 445555554211 124578888865 599999887764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+. ..+++||+++.+++++|+++++++|++++++.
T Consensus 363 ~~~--------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 363 VPK--------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp SCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCC--------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 221 14789999999999999999999999988753
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=248.50 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=233.3
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCc-EEEeCChHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADA-IIFCGAGTTAA 152 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~-vift~sGttaa 152 (625)
..++|+.+... +.++.+.+++.+.+.... . .|.......++.+.+.+++++.+|. +++ + |++| +|++++
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~~-~g~~~a 99 (389)
T 1gd9_A 27 DVISLGIGEPDFDTPQHIKEYAKEALDKGL----T-HYGPNIGLLELREAIAEKLKKQNGIEADPK-TEIMVL-LGANQA 99 (389)
T ss_dssp SCEECCCCSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEE-SSTTHH
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhCCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCC-CeEEEc-CChHHH
Confidence 46777776654 357889999888774311 0 1111112345555566666666684 444 7 9998 677788
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 100 ~~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 158 (389)
T 1gd9_A 100 FLMGLSAF---------------LKDGEE--VLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT---- 158 (389)
T ss_dssp HHHHHTTT---------------CCTTCE--EEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC----
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC----
Confidence 88887765 467875 99999999999888888999999999875 35789999999987
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lgg 302 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ..++..+. ..+.|+++.|+||++|.
T Consensus 159 -~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (389)
T 1gd9_A 159 -DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 237 (389)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred -cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCC
Confidence 47899999999999999975 89999999999999999999886543 22233221 12568999999999974
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEV 379 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~ 379 (625)
|+ .+|++++++++. +.+.+.. ... ..+++..... .+++... ......+.
T Consensus 238 ~G~r~G~~~~~~~~~--~~l~~~~------------------------~~~-~~~~~~~~~~a~~~~l~~~-~~~~~~~~ 289 (389)
T 1gd9_A 238 TGWRLGFVAAPSWII--ERMVKFQ------------------------MYN-ATCPVTFIQYAAAKALKDE-RSWKAVEE 289 (389)
T ss_dssp GGGCCEEEECCHHHH--HHHHHHH------------------------TTT-TCSCCHHHHHHHHHHHTCH-HHHHHHHH
T ss_pred cccceEEEEECHHHH--HHHHHHH------------------------hhh-ccCCCHHHHHHHHHHHhCC-CcchHHHH
Confidence 43 379999987762 1111100 000 1122222221 1222211 01114567
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
+.++.+.+++++.+.|.++ ++++..+. .+.+.+...+. .+.+..++.+.|.+++||.+++|.
T Consensus 290 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~gi~v~~g~ 351 (389)
T 1gd9_A 290 MRKEYDRRRKLVWKRLNEM-GLPTVKPK----GAFYIFPRIRD-------------TGLTSKKFSELMLKEARVAVVPGS 351 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCCCCCC----BTTEECCBCGG-------------GTCCHHHHHHHHHHHTCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHc-CCeecCCC----eeeEEEEeccC-------------CCCCHHHHHHHHHHhCCEEEeCch
Confidence 7788888899999999877 77665542 34443333321 023467888888756899999887
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|+.. .++++||+++. ++++++.++++|++++++
T Consensus 352 ~~~~~---------------------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 352 AFGKA---------------------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp GGCGG---------------------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred hhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 76411 14789999984 899999999999988765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=243.73 Aligned_cols=354 Identities=12% Similarity=-0.035 Sum_probs=229.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.++.++.+.+++.+.+...+.+| .....++++.+++++|.+ ++++| +|+++++..++.+++.
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~---~v~~~-~ggt~al~~~~~~~~~--- 69 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK---HALVF-NSATSALLTLYRNFSE--- 69 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS---EEEEE-SCHHHHHHHHHHHSSC---
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHhcc---
Confidence 36778899999998885432222 124678999999999986 68898 6777778888877620
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
.+++||+ |+++.++|+++...++..|++++.+++++++.+|+++|+++++ +++++|+++++
T Consensus 70 ---------~~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~--- 130 (375)
T 2fnu_A 70 ---------FSADRNE--IITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLIN-----ERTKAIVSVDY--- 130 (375)
T ss_dssp ---------CCTTSCE--EEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCC-----TTEEEEEEECG---
T ss_pred ---------cCCCCCE--EEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcC-----cCceEEEEeCC---
Confidence 0367875 9999999999999999999999999998877899999998886 57888888776
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc--CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe--ccccccCCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN--LRSRNIDGYDAIFLATHKFLGGPGTPGILLIS--KALYQLGSS 321 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~--~~~~~l~~~ 321 (625)
||.+.|+++|.++|++||+++|+|++|+.+..+.+ +..+ ..+++.++|+||+++ | |+|+++++ +++. +.+
T Consensus 131 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~--~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~--~~~ 204 (375)
T 2fnu_A 131 AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGF--ALASVFSFHAIKPIT-T-AEGGAVVTNDSELH--EKM 204 (375)
T ss_dssp GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSSC-C-SSCEEEEESCHHHH--HHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeecccc--CCeEEEeCCCCCCcc-c-cCceEEEeCCHHHH--HHH
Confidence 99999999999999999999999999998765533 2221 123444556669995 6 68999885 3341 222
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
.+...++.. .. .. ..+ ......+..+..++.. ++.+. ...+.+.+.++.+.+++++.+.|.++|++
T Consensus 205 ~~~~~~~~~-~~-~~-----~~~-~~~~~~~~~~~~~~~~----a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (375)
T 2fnu_A 205 KLFRSHGML-KK-DF-----FEG-EVKSIGHNFRLNEIQS----ALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYF 270 (375)
T ss_dssp HHHTBTTEE-ES-SS-----SCE-EESSCCCBCCCCHHHH----HHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHhcCCc-cc-cc-----ccc-ccccccccCCCCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 222222211 00 00 000 0000001112222222 22222 23467788889999999999999999999
Q ss_pred EEeCCCC-CCCcceE-EEEeccCCCCCCccccccCCCCC-ChHHHHHHhhhhcCeeeecCCCCCch---hhHhhhcCChh
Q 043646 402 QVLGNTS-VKRQAIL-SFLVYSTTNSSPENMKIERNKPL-HGPFVATLFNDLFGIQARGGCACAGP---YGHTLLAFDQT 475 (625)
Q Consensus 402 ~v~~~~~-~~~~~i~-~f~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~L~~~~gI~v~~G~~~~~~---~~~~~l~~~~~ 475 (625)
++..+.+ ....+.+ .+.+ +.. ++ +..++.+.|. ++||.++.+|..... ++..+..-..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~~~l~~~L~-~~gi~v~~~~~p~~~~~~~~~~~~~~~~~ 335 (375)
T 2fnu_A 271 TPLHPLLKDKSSNHLYPILM-HQK-------------FFTCKKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLK 335 (375)
T ss_dssp EESGGGCSSCCCCSCEEEEE-CGG-------------GGGGHHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCH
T ss_pred cccCCCCCCCcceEEEEEEe-Ccc-------------ccchHHHHHHHHH-HCCCCccccccccccchhhhcCCCccCCh
Confidence 9876521 1122222 2222 210 12 3567888885 479999854421100 00000000000
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..... ..+++||+++.++|++|+++++++|++++.+
T Consensus 336 ~~~~~-----------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 336 SAEDF-----------YHAEISLPCHANLNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp HHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------HhCEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00000 1378999999999999999999999998765
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=248.06 Aligned_cols=339 Identities=13% Similarity=0.096 Sum_probs=235.1
Q ss_pred ceEeccCCCC-Cc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 77 RLTYADHTAS-GR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 77 ~~~Yld~~~~-~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
..+.|..+.. +. +++.+.+++.+.+... .+.. ..+....+..+..+++++++++++|.+ ++++| +|+++++.
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~-~~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~-~ggt~a~~ 117 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKY-GTGC-AGSRFLNGTLDIHVELEEKLSAYVGKE---AAILF-STGFQSNL 117 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHHH-CSCC-CSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEE-SSHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHHc-CCCC-CCcCcccCCcHHHHHHHHHHHHHhCCC---cEEEE-CCHHHHHH
Confidence 3444444433 32 6788999988877432 1111 111112223467888999999999973 78998 56667788
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.++ +++||. |+++.++|+++...++..|++++.++. +|+++|++++++... +++
T Consensus 118 ~~~~~~---------------~~~gd~--V~~~~p~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~-~~~ 174 (398)
T 3a2b_A 118 GPLSCL---------------MGRNDY--ILLDERDHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE-DSA 174 (398)
T ss_dssp HHHHHS---------------SCTTCE--EEEETTCCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS-SSC
T ss_pred HHHHHH---------------hCCCCE--EEECCccCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc-CCc
Confidence 887776 468885 999999999999899999999999986 589999999984100 178
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc---cccCCC-CCC-CCCcEEEEcCCCCCCCCCCceEE
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---KINLRS-RNI-DGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~-~~~-~~~D~v~~S~hK~lggp~g~G~l 309 (625)
++|++++++||||.+.|+++|.++|++||+++|+|++++.+.. ...+.. .+. +++|+++.|+||+++ |.| |++
T Consensus 175 ~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~ 252 (398)
T 3a2b_A 175 KLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFV 252 (398)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEE
T ss_pred eEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEE
Confidence 9999999999999999999999999999999999999986642 122211 111 146999999999998 666 999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++++.. .+.+.. ......++++..+. +.++++.. +. .+.+.++.+++
T Consensus 253 ~~~~~~~~--~l~~~~-----------------------~~~~~~~~~~~~~~a~~~~~l~~~--~~--~~~~~~~~~~~ 303 (398)
T 3a2b_A 253 AGDADVID--FLKHNA-----------------------RSVMFSASMTPASVASTLKALEII--QN--EPEHIEKLWKN 303 (398)
T ss_dssp EECHHHHH--HHHHHC-----------------------HHHHSSBCCCHHHHHHHHHHHHHH--HH--CTHHHHHHHHH
T ss_pred EeCHHHHH--HHHHhc-----------------------ccceecCCCCHHHHHHHHHHHHHH--hh--CHHHHHHHHHH
Confidence 99887622 111000 00111233444443 22344432 11 34667778888
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ +++++.+ .+.++.+.+ +. +.+..++.+.|.++ ||.+++|..|..+.
T Consensus 304 ~~~l~~~L~~~-g~~~~~~----~g~~~~~~~-~~--------------~~~~~~l~~~l~~~-gi~v~~~~~~~~~~-- 360 (398)
T 3a2b_A 304 TDYAKAQLLDH-GFDLGAT----ESPILPIFI-RS--------------NEKTFWVTKMLQDD-GVFVNPVVSPAVPA-- 360 (398)
T ss_dssp HHHHHHHHHHT-TCCBCSC----CSSEEEEEC-CC--------------HHHHHHHHHHHHHT-TEECEEECTTTSCG--
T ss_pred HHHHHHHHHhc-CCCcCCC----CCCEEEEEc-CC--------------HHHHHHHHHHHHHC-CcEEEeeCCCCCCC--
Confidence 89999999877 7766543 234444443 21 11255788888764 99999988775321
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++.+++++|+++++++|++++.+
T Consensus 361 ------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 361 ------------------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp ------------------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1388999999999999999999999998765
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-26 Score=242.92 Aligned_cols=347 Identities=12% Similarity=-0.031 Sum_probs=233.9
Q ss_pred CceEeccCCC-----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC------------CCC
Q 043646 76 RRLTYADHTA-----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG------------GGQ 138 (625)
Q Consensus 76 ~~~~Yld~~~-----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g------------~~~ 138 (625)
+..++|+.+. ..++++.+.+++.+.+.... ...|... ....++++.++++++ +++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~----~~~y~~~----~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE----CNGYFPT----VGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC----SSSCCCT----TCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc----cCCcCCC----CCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 4578888775 45678899999988774310 0011111 113446666666666 445
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCC
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLL 216 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~l 216 (625)
+ +|++| +|+++++..++.++ +++||+ |+++.++|+++...++..|++++.++++++ +.+
T Consensus 105 ~-~v~~~-~g~~~al~~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 165 (416)
T 1bw0_A 105 D-NVVLC-SGGSHGILMAITAI---------------CDAGDY--ALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA 165 (416)
T ss_dssp G-GEEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEE
T ss_pred c-eEEEe-CChHHHHHHHHHHh---------------CCCCCE--EEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCC
Confidence 5 89998 78999999988877 467885 888899999998888889999999998653 568
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC--------ccccCCCCC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY--------VKINLRSRN 285 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~--------~~id~~~~~ 285 (625)
|+++|+++++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++..+.
T Consensus 166 d~~~l~~~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 240 (416)
T 1bw0_A 166 DLDEIRRLKD-----DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE 240 (416)
T ss_dssp CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred CHHHHHHHhc-----cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence 9999999887 57899999999999999998 8999999999999999999987522 112232221
Q ss_pred CCCCcEEEEcCCCCCCCCC-CceEEEEecc--ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPG-TPGILLISKA--LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM 362 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~-g~G~l~v~~~--~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 362 (625)
....++++.|++|+|+.|+ .+|++++++. +. +.+.. ... ......++++....
T Consensus 241 ~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~--~~~~~--------------------~~~--~~~~~~~~~~~~~~ 296 (416)
T 1bw0_A 241 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNG--PSFLE--------------------GLK--RVGMLVCGPCTVVQ 296 (416)
T ss_dssp CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSC--HHHHH--------------------HHH--HHHHHHTCSCHHHH
T ss_pred CCCcEEEEecchhhCCCCCceEEEEEeeCchhhH--HHHHH--------------------HHH--HHhccccCCCcHHH
Confidence 1123567789999987664 4799999874 31 10000 000 00001223333332
Q ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 363 IRAALAFWVK-EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 363 ~~aal~~~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
.. +.+.+.. ...+.+.+.++.+.+++++.+.|.++|+++++.+. .+.+.+...+... -....+..
T Consensus 297 ~a-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~~~~~~~~~~~---------~~~~~~~~ 362 (416)
T 1bw0_A 297 AA-LGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR----GAMYLMSRIDLEK---------YRDIKTDV 362 (416)
T ss_dssp HH-HHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC----BTTEEEEEECGGG---------BSSCCSHH
T ss_pred HH-HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC----eeEEEEEeCCHHH---------cCCCCCHH
Confidence 21 1122210 12345677788888999999999998899887553 2333333222100 00012456
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++.+.|.+++||.+++|..|. .++++||+++ +++++++.+++.|+++++
T Consensus 363 ~~~~~l~~~~gi~v~~g~~f~-----------------------------~~~~iRis~~--~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 363 EFFEKLLEEENVQVLPGTIFH-----------------------------APGFTRLTTT--RPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp HHHHHHHHHHCEECEEGGGGT-----------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEecccccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 788877656899999887654 1489999996 689999999999998876
Q ss_pred hh
Q 043646 522 YG 523 (625)
Q Consensus 522 ~~ 523 (625)
+.
T Consensus 412 ~~ 413 (416)
T 1bw0_A 412 RH 413 (416)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=245.74 Aligned_cols=349 Identities=9% Similarity=-0.067 Sum_probs=238.9
Q ss_pred CceEeccCCCC-----CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC-----CCCCCcEEEe
Q 043646 76 RRLTYADHTAS-----GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG-----GGQADAIIFC 145 (625)
Q Consensus 76 ~~~~Yld~~~~-----~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g-----~~~~~~vift 145 (625)
+.+++|+.+.. .++++.|.+++.+.+.....+ .|.. .....++++.++++++ ++++ +|++|
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~----~y~~----~~g~~~lr~~la~~~~~~~~~~~~~-~v~~t 124 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN----GYAP----SIGFLSSREEIASYYHCPEAPLEAK-DVILT 124 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS----SCCC----TTCCHHHHHHHHHHHCBTTBCCCGG-GEEEE
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC----CCCC----CCCcHHHHHHHHHHHhhcCCCCChH-HEEEe
Confidence 45788887764 367889999998877431111 1111 1124568889999988 5555 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRS 223 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~ 223 (625)
+|+++++..++.++ .++||+ |+++.+.|+.+...++..|++++.++.++ ++.+|+++|++
T Consensus 125 -~g~t~al~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 186 (427)
T 3dyd_A 125 -SGCSQAIDLCLAVL---------------ANPGQN--ILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEY 186 (427)
T ss_dssp -SSHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHS
T ss_pred -cCcHHHHHHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHH
Confidence 78888899888877 467885 88999999998888889999999999864 45789999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCCCCCcEEEEcC
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNIDGYDAIFLAT 296 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~~~~D~v~~S~ 296 (625)
+++ +++++|++++++||||.+.| +++|+++|+++|+++++|++++... ....+..+..+...+++.|+
T Consensus 187 ~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 187 LID-----EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp SCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred Hhc-----cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 887 47899999999999999999 9999999999999999999987522 22233333221223567799
Q ss_pred CCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHh
Q 043646 297 HKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKE 373 (625)
Q Consensus 297 hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~ 373 (625)
+|.|+.|+ .+|++++++... ...+.. ...+..... . ..+++..+.. .+++... .
T Consensus 262 sK~~~~~G~riG~~~~~~~~~---~~~~~i----------------~~~l~~~~~-~-~~~~~~~~~~a~~~~L~~~--~ 318 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRD---IFGNEI----------------RDGLVKLSQ-R-ILGPCTIVQGALKSILCRT--P 318 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTT---SSHHHH----------------HHHHHHHHH-H-HCCSCHHHHHHHHHHHHHS--C
T ss_pred cccCCCcCcceEEEEecCcch---hhHHHH----------------HHHHHHHHh-c-cCCCCHHHHHHHHHHHHhc--C
Confidence 99987554 379999886420 000000 000000011 1 1233333322 1222210 1
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 374 YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
....+.+.++.+.+++++.+.|+++|+++++.+. .+.+.+...+... -....+..++++.|.+++||
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~----~g~~~~~~l~~~~---------~~~~~~~~~~~~~l~~~~gV 385 (427)
T 3dyd_A 319 GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS----GAMYLMVGIEMEH---------FPEFENDVEFTERLVAEQSV 385 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS----BTTEEEEEECGGG---------CTTCSSHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC----eeEEEEEecCHhh---------cCCCCCHHHHHHHHHHHCCE
Confidence 2335677788888899999999988999887663 3445544332100 00123456788888667899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+++|..|. .++++||+++ ++++++++++++|++++.+.
T Consensus 386 ~v~~g~~~~-----------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 386 HCLPATCFE-----------------------------YPNFIRVVIT--VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp ECEEGGGGT-----------------------------CTTEEEEESC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCcccC-----------------------------CCCeEEEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence 999887664 2489999987 68999999999999988764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=244.61 Aligned_cols=344 Identities=11% Similarity=-0.003 Sum_probs=234.2
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal 153 (625)
.+++|..+... ++++.+.+++.+.+... .. .|..+ ..++.+.+.+++++.+| .+++ +|++| +|+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~l~~~la~~l~~~~g~~~~~~-~v~~t-~g~~~a~ 102 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDET----VL-GYTGP--TEEYKKTVKKWMKDRHQWDIQTD-WIINT-AGVVPAV 102 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHC----CC-SSBCC--CHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcC----CC-CCCCC--cHHHHHHHHHHHHHHhCCCCChh-hEEEc-CCHHHHH
Confidence 45566555543 45678999988877321 00 11111 34555666666666678 4444 89998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCC--CCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNG--LLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~--~ld~~~L~~~l~~~~~ 230 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.+|.+ .++ .+|+++|++++++
T Consensus 103 ~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--- 162 (399)
T 1c7n_A 103 FNAVREF---------------TKPGDG--VIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--- 162 (399)
T ss_dssp HHHHHHH---------------CCTTCE--EEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc---
Confidence 9888877 467875 9999999999988888889999999886 333 5899999999973
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--CCCcEEEEcCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI--DGYDAIFLATHKFLG 301 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~--~~~D~v~~S~hK~lg 301 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+.. .+.++++.|++|++|
T Consensus 163 -~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (399)
T 1c7n_A 163 -KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN 241 (399)
T ss_dssp -TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT
T ss_pred -CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc
Confidence 47899999999999999998 89999999999999999999886321 223332211 144688899999997
Q ss_pred CCC-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 302 GPG-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 302 gp~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
.|+ .+|++++++ ++. +.+.+. ...+..++++......+ .+.+.......+.
T Consensus 242 ~~G~r~G~~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~~a~-~~~l~~~~~~~~~ 294 (399)
T 1c7n_A 242 IAGMGMSNIIIKNPDIR--ERFTKS------------------------RDATSGMPFTTLGYKAC-EICYKECGKWLDG 294 (399)
T ss_dssp CGGGCCEEEECCCHHHH--HHHHHH------------------------HHHTTCCCCCHHHHHHH-HHHHHHCHHHHHH
T ss_pred ccchheEEEEECCHHHH--HHHHHH------------------------HhhcccCCCCHHHHHHH-HHHHhCChHHHHH
Confidence 443 379999874 452 111100 11112233344333222 1121111223566
Q ss_pred HHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 380 IKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
+.++.+.+++++.+.|.+ +|+++++.+ .++.+.+...+.. +++..++.+.|.+++||.+++|
T Consensus 295 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~gi~v~~g 357 (399)
T 1c7n_A 295 CIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWIDFRAL-------------KMDHKAMEEFMIHKAQIFFDEG 357 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEECGGG-------------CCCHHHHHHHHHHTTCCCCEEG
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEecC----CceEEEEEEcccC-------------CCCHHHHHHHHHHhCCEEEeCc
Confidence 777888889999999987 788876654 3455554433320 1346678888865689999988
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..|... .++++||+++.. +++++.+++.|++++.+.
T Consensus 358 ~~~~~~---------------------------~~~~iRis~~~~--~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 358 YIFGDG---------------------------GIGFERINLAAP--SSVIQESLERLNKALKDL 393 (399)
T ss_dssp GGGCGG---------------------------GTTEEEEECCSC--HHHHHHHHHHHHHHHHHH
T ss_pred cccCCC---------------------------CCCeEEEEeccC--HHHHHHHHHHHHHHHHHH
Confidence 776411 248999999854 799999999999887654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=244.62 Aligned_cols=338 Identities=14% Similarity=0.037 Sum_probs=227.4
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|+.+... +.|+.+.+++.+.+.... . .|....+..++.+++.+++.+.+|. +++ +|++| +|+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~g~~~al 104 (385)
T 1b5p_A 32 DLVALTAGEPDFDTPEHVKEAARRALAQGK----T-KYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVT-VGGSQAL 104 (385)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEE-SHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCChH-HEEEc-CChHHHH
Confidence 45666655443 346788888877763211 0 1111122345555666666655565 344 89998 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.++|+.+...++..|++++.+++++ ++.+|+++|+++++
T Consensus 105 ~~~~~~l---------------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 162 (385)
T 1b5p_A 105 FNLFQAI---------------LDPGDE--VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----- 162 (385)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC-----
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC-----
Confidence 9998887 578885 88999999999888888999999999975 45789999999887
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~- 304 (625)
+++++|++++++||||.+.+ +++|+++|++||+++|+|++++.... ..++..+.. +.++++.|++|++|.|+
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~ 241 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP-EHTLTVNGAAKAFAMTGW 241 (385)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT-TTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC-CCEEEEEechhhcCCccc
Confidence 57899999999999999977 88999999999999999999875432 122332211 45788899999998543
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|++++++++. +.+.+. ......+.+.+.+.+ .+++..........+.+.++
T Consensus 242 RiG~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 295 (385)
T 1b5p_A 242 RIGYACGPKEVI--KAMASV------------------------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREA 295 (385)
T ss_dssp CCEEEECCHHHH--HHHHHH------------------------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCHHHH--HHHHHH------------------------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 289999987762 111100 000111222333221 12221100011124566777
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.++.++++.+.|.++ ++++..+. .+.+.+...+. .+++..++.+.|. ++||.+++|..|+
T Consensus 296 ~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-------------~~~~~~~l~~~l~-~~gv~v~~g~~f~- 355 (385)
T 1b5p_A 296 YRRRRDLLLEGLTAL-GLKAVRPS----GAFYVLMDTSP-------------IAPDEVRAAERLL-EAGVAVVPGTDFA- 355 (385)
T ss_dssp HHHHHHHHHHHHHHH-TCCBCCCS----BTTEEEEECTT-------------TCSSHHHHHHHHH-HTTEECEESGGGT-
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----eeEEEEEecCC-------------CCCCHHHHHHHHH-HCCeEEecccccC-
Confidence 777888888888876 77665542 34444433321 1235678888886 6899999987764
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++|||++ +++++++.+++.|++++
T Consensus 356 ----------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 356 ----------------------------AFGHVRLSYA--TSEENLRKALERFARVL 382 (385)
T ss_dssp ----------------------------CTTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred ----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 1378999997 78999999998887654
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=246.64 Aligned_cols=347 Identities=15% Similarity=0.114 Sum_probs=233.8
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
++|+++.++.|+.|.+++.+.+...+ ++++...+.......++.+++++++++++|.+++ .+++++| ++++..++
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~--~i~~~sG-t~a~~~a~ 102 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA--NVQPHSG-AQANMAVY 102 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce--EEEecCc-HHHHHHHH
Confidence 56666667779999999988774222 3333211111133456666789999999998743 4444478 77777777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HHcC--CeEEEEecC-CCCCCCHHHHHHHHHHhhhC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQSL--AEVVEIGLD-DNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G--~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~ 231 (625)
.++ +++||+ |+++.++|+++...+ ...| .+++.++++ .++.+|+++|++++++
T Consensus 103 ~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~---- 161 (405)
T 2vi8_A 103 FTV---------------LEHGDT--VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL---- 161 (405)
T ss_dssp HHH---------------CCTTCE--EEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH----
T ss_pred HHh---------------cCCCCE--EEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh----
Confidence 766 467885 888888998875311 2334 478888876 4678999999999984
Q ss_pred CCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEE
Q 043646 232 KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v 311 (625)
.++++|+++ ++| .|...|+++|.++|++||+++|+|++++.+..+.+........+|++++|+||+|++|.| |++++
T Consensus 162 ~~~~~v~~~-~~~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~ 238 (405)
T 2vi8_A 162 HRPKLIVAA-AAA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILC 238 (405)
T ss_dssp HCCSEEEEC-CSS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEE
T ss_pred cCCeEEEEe-CCC-CCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEE
Confidence 267888774 333 467779999999999999999999999865443333322223579999999999988888 99999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
++++.. .+.+. ...+..++++..+.. .+++... +..+.+.+.++.+.+++
T Consensus 239 ~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~ 290 (405)
T 2vi8_A 239 QEQFAK--QIDKA------------------------IFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAK 290 (405)
T ss_dssp CHHHHH--HHHHH------------------------HTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHhh------------------------hcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHH
Confidence 877621 11110 011223555554443 2344443 23456788889999999
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|.++ +++++.+. ....++.+.+... +++..++.+.|. ++||.+++|..|....+.
T Consensus 291 ~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l~-~~gi~v~~g~~~~~~~~~-- 350 (405)
T 2vi8_A 291 RLASALQNE-GFTLVSGG--TDNHLLLVDLRPQ--------------QLTGKTAEKVLD-EVGITVNKNTIPYDPESP-- 350 (405)
T ss_dssp HHHHHHHHT-TCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHHH-HHTEECEEECCTTCSSCT--
T ss_pred HHHHHHHhC-CCeEecCC--CCceEEEEEccCC--------------CCCHHHHHHHHH-HcCceeccCcCccccCCC--
Confidence 999999887 88887652 1234444443211 234667888884 579999988643100000
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY----YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~----~~t~edid~ll~aL~~~~~~ 522 (625)
..++++||+++. .++++|+++++++|++++.+
T Consensus 351 ---------------------~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 351 ---------------------FVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp ---------------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred ---------------------CCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 024789999986 56899999999999988754
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=245.99 Aligned_cols=331 Identities=16% Similarity=0.137 Sum_probs=232.8
Q ss_pred CcchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+.. .+..+ ....++.+++++++++.+| .+++ +|+|| +|+++++..++.++
T Consensus 73 ~~~~~~v~~a~~~~~~~~~~~y~--------~~~~~l~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~ea~~~a~~~~--- 139 (421)
T 3l8a_A 73 FLPVPEIKEAIINYGREHIFGYN--------YFNDDLYQAVIDWERKEHDYAVVKE-DILFI-DGVVPAISIALQAF--- 139 (421)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSCB--------CCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHhcCCcCCC--------CCCHHHHHHHHHHHHHHhCCCCCHH-HEEEc-CCHHHHHHHHHHHh---
Confidence 34678999999887743 11111 1125678889999999999 4444 89998 78888888888876
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCC--CCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNG--LLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~--~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
.++||+ |++..+.|+++...++..|.+++.+|++ .++ .+|+++|++++++ +++++|+++
T Consensus 140 ------------~~~gd~--Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~----~~~~~vil~ 201 (421)
T 3l8a_A 140 ------------SEKGDA--VLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID----NNVKIYLLC 201 (421)
T ss_dssp ------------SCTEEE--EEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH----TTEEEEEEE
T ss_pred ------------cCCCCE--EEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc----cCCeEEEEC
Confidence 467775 8888999999988888899999999986 333 6899999999984 479999999
Q ss_pred cccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC--CCCcEEEEcCCCCCCCCC-CceEEE
Q 043646 241 ACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI--DGYDAIFLATHKFLGGPG-TPGILL 310 (625)
Q Consensus 241 ~~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~--~~~D~v~~S~hK~lggp~-g~G~l~ 310 (625)
+++||||.+ .++++|+++|++||+++|+|++|+... ....+..+.. .+.++++.|++|++|.++ .+|+++
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~ 281 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI 281 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEE
Confidence 999999998 568999999999999999999987532 1222222211 144588899999997343 479999
Q ss_pred Ee-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 311 IS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 311 v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
++ +++.. .+.+ .......++++..+...+...+. ......+.+.++.+.+++
T Consensus 282 ~~~~~l~~--~~~~------------------------~~~~~~~~~~n~~~~~a~~aal~-~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 282 IQNESLRR--KFQY------------------------RQLANNQHEVPTVGMIATQAAFQ-YGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp CCSHHHHH--HHHH------------------------HHHHTTCSCCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHH--HHHH------------------------HHHhcccCCCCHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 88 55521 1100 01112233445444332222221 112235677788888899
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|+++|+++++.+. +..+.+...+.. +++..++.+.|.+++||.+++|..|+..
T Consensus 335 ~l~~~L~~~~~i~~~~~~----~~~~~~v~~~~~-------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~----- 392 (421)
T 3l8a_A 335 LVIKELEAKTKIKVMEPE----GTYLVWLDFSAY-------------AIAQPQLSEKLQNEAKVVLNDGAHFGKE----- 392 (421)
T ss_dssp HHHHHHHHHCSCEEECCS----BSSEEEEECGGG-------------TCCTTHHHHHHHHTTCEECEEGGGGCGG-----
T ss_pred HHHHHHHhCCCceEeCCC----eeEEEEEecccc-------------CCCHHHHHHHHHHhCCEEEECchhhCCC-----
Confidence 999999877889888663 344443333321 1335578888877789999998877521
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ ++++++++++++|++++.
T Consensus 393 ----------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 393 ----------------------GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ----------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ----------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 2489999998 589999999999998753
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-26 Score=242.34 Aligned_cols=343 Identities=12% Similarity=-0.019 Sum_probs=234.8
Q ss_pred CceEeccCCCCC----cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChH
Q 043646 76 RRLTYADHTASG----RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGT 149 (625)
Q Consensus 76 ~~~~Yld~~~~~----~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGt 149 (625)
+..++|+.+... +.++.+.+++.+.+.... . .|.......++.+.+.+++.+.+|. +++ +|++| +|+
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~-~v~~t-~g~ 110 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH----N-YYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVT-AAV 110 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHH
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHhcCCCCCHH-HEEEc-CCh
Confidence 356788877662 456889999888774321 0 1111112344555566666655554 344 89998 788
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHH
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLEL 227 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~ 227 (625)
++++..++.++ +++||+ |+++.++|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 111 ~~al~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~- 172 (406)
T 1xi9_A 111 TEALQLIFGAL---------------LDPGDE--ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT- 172 (406)
T ss_dssp HHHHHHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC-
T ss_pred HHHHHHHHHHh---------------CCCCCE--EEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC-
Confidence 88899888876 467885 99999999999888888999999999875 34689999999987
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCC-cEEEEcCCCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGY-DAIFLATHKFL 300 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~-D~v~~S~hK~l 300 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ...+..+. .+. |+++.|+||++
T Consensus 173 ----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~ 247 (406)
T 1xi9_A 173 ----DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVY 247 (406)
T ss_dssp ----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTT
T ss_pred ----cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCceEEEEecccccc
Confidence 47899999999999999976 89999999999999999999876432 11222211 245 78889999999
Q ss_pred CCCC-CceEEE--Eec----cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh
Q 043646 301 GGPG-TPGILL--ISK----ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE 373 (625)
Q Consensus 301 ggp~-g~G~l~--v~~----~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~ 373 (625)
+.|+ .+|+++ .++ ++.. .+.. ..... .+++..... ++.+++...
T Consensus 248 ~~~G~r~G~~~~~~~~~~~~~l~~--~l~~-------------------------~~~~~-~~~~~~~~~-a~~~~l~~~ 298 (406)
T 1xi9_A 248 FATGWRLGYMYFVDPENKLSEVRE--AIDR-------------------------LARIR-LCPNTPAQF-AAIAGLTGP 298 (406)
T ss_dssp CCGGGCCEEEEEECTTCTTHHHHH--HHHH-------------------------HHHHT-CCSCSHHHH-HHHHHHHSC
T ss_pred CCCccEEEEEEEecCchhHHHHHH--HHHH-------------------------HHHhh-cCCCHHHHH-HHHHHHhCC
Confidence 7333 279998 666 5421 1100 00111 222222211 112222111
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 374 YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
..+.+.+.++.+.+++++.+.|.++|++++..+. .+++.|...+.. .+.+..++.+.|.+++||
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~l~~~l~~~~gi 362 (406)
T 1xi9_A 299 MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ----GAFYIFPKIEVG------------PWKNDKEFVLDVLHNAHV 362 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC----BSSEECCEECSC------------SCSSHHHHHHHHHHHHCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC----eeEEEEEecCcc------------CCCCHHHHHHHHHHhCCE
Confidence 1225677788888899999999988898876542 355555333310 012466788888656899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++|..|+.. .++++||+++ +++++++.++++|++++++
T Consensus 363 ~v~~g~~f~~~---------------------------~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 363 LFVHGSGFGEY---------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp ECEEGGGGCGG---------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred EEeCchhcCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 99988766410 1488999998 8999999999999988765
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=236.51 Aligned_cols=325 Identities=14% Similarity=0.040 Sum_probs=227.6
Q ss_pred CceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.++.|+.+.. .++|+.+.+++.+.+......|.. ...+++++++++++++++ +|++| +|+++++.
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~-~i~~~-~g~t~al~ 92 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDI-GIVLG-NGASEIIE 92 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSC-EEEEE-SSHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcc-eEEEc-CCHHHHHH
Confidence 45677776633 346788999988877543333321 135789999999998776 89998 78888888
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
.++.+ + | .|+++.+.|+++...++..|++++.++++.++.+++++|+++++ + +
T Consensus 93 ~~~~~----------------~---d--~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~-----~-~ 145 (361)
T 3ftb_A 93 LSISL----------------F---E--KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKID-----D-V 145 (361)
T ss_dssp HHHTT----------------C---S--EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTT-----T-C
T ss_pred HHHHH----------------c---C--cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhcc-----C-C
Confidence 87543 3 4 38888999999988899999999999999887889999999887 5 8
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCC-CCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 235 MLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK--INLRSR-NIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~-~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
++|++++++||||.+.| +++|+++|++||+++|+|++++..... ...... ...+.++++.|++|++|.|+ ++|
T Consensus 146 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g 225 (361)
T 3ftb_A 146 DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFG 225 (361)
T ss_dssp SEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCccee
Confidence 99999999999999986 566888888999999999998743321 111111 11133477789999997443 478
Q ss_pred EEE-EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 308 ILL-ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 308 ~l~-v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+++ .++++.. .+... ....+++..+...+ .+.+ .+....+.+.++.+.
T Consensus 226 ~~~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~-~~~l-~~~~~~~~~~~~~~~ 274 (361)
T 3ftb_A 226 YGITNNKEIAA--KIKAK---------------------------QNPWNINCFAEMAA-INCL-KDTNYIEESLLWIKK 274 (361)
T ss_dssp EEEESCHHHHH--HHHTT---------------------------SCTTCSCHHHHHHH-HHTS-SCHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHH--HHHhh---------------------------CCCCCCCHHHHHHH-HHHh-cCHHHHHHHHHHHHH
Confidence 888 5555521 11100 01123333332211 1111 122345677788888
Q ss_pred HHHHHHHhhCCCCcEE-EeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 387 YIESALGRILPNQNIQ-VLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~-v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
+++++.+.|.++|+++ +..+. +.++.+.+.. .+..++.+.|.+ +||.+++|..|...
T Consensus 275 ~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~----------------~~~~~l~~~l~~-~gi~v~~g~~~~~~- 332 (361)
T 3ftb_A 275 ERKRFIEELNKIGFIKRVFSPH----ANFVLCRLEN----------------ISGEKLYDSLLK-EDIVIRRCCNFIGL- 332 (361)
T ss_dssp HHHHHHHHHHHSSSEEEEECCS----SSEEEEEESS----------------SCHHHHHHHHHT-TTEECEECTTSTTC-
T ss_pred HHHHHHHHHHhCCCCceecCCC----CeEEEEEcCC----------------CCHHHHHHHHHH-CCeEEeeCccCCCC-
Confidence 8999999999899998 76553 3455444321 246788898876 59999999877511
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +.+|+++++++|+.+.+.
T Consensus 333 --------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 333 --------------------------DDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp --------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred --------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 2589999997 889999999999987653
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=243.47 Aligned_cols=338 Identities=15% Similarity=0.125 Sum_probs=223.5
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+++.+.+++.+.+.... .... |.......++.+.+.+++.+.+|. +++ +|++| +|+++++..++.++
T Consensus 50 ~~~~v~~a~~~~~~~~~--~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~t-~g~t~a~~~~~~~~------ 118 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEP--KSVM-YTPANGIPELREELAAFLKKYDHLEVSPE-NIVIT-IGGTGALDLLGRVL------ 118 (407)
T ss_dssp CHHHHHHHHHHHHHHCG--GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGG-GEEEE-SHHHHHHHHHHHHH------
T ss_pred CHHHHHHHHHHHHhhcc--cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcc-eEEEe-cCHHHHHHHHHHHh------
Confidence 56788888887764310 0000 111111234444444444444484 444 89998 78889899988887
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCeEE-EEecccC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPMLG-SFSACSN 244 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~lv-~~~~~~n 244 (625)
+++||+ |++..+.|+++...++..|++++.++.++++ +|+++|+++++.... .+++++| ++++++|
T Consensus 119 ---------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~n 186 (407)
T 2zc0_A 119 ---------IDPGDV--VITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQN 186 (407)
T ss_dssp ---------CCTTCE--EEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCT
T ss_pred ---------cCCCCE--EEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCC
Confidence 467875 8898999999888888889999999987665 899999999972111 1368886 5789999
Q ss_pred ccccccCHH---HHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEecccc
Q 043646 245 VTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALY 316 (625)
Q Consensus 245 ~TG~~~~l~---~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~ 316 (625)
|||.+.|.+ +|+++|++||+++|+|++++.+.. ...+..+...+.++++.|++|+++ |+ .+|++++++++.
T Consensus 187 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~ 265 (407)
T 2zc0_A 187 PMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEIL 265 (407)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecCHHHH
Confidence 999999986 999999999999999999886432 122322211234578889999998 64 489999987762
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh---h-cCHHHHHHHHHHHHHHHH
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE---Y-IGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~---~-~g~~~i~~~~~~l~~~l~ 392 (625)
. .+.+.. .....+++.+... ++..++ .. . ...+.+.++.+.+++++.
T Consensus 266 ~--~~~~~~------------------------~~~~~~~~~~~~~--~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~ 316 (407)
T 2zc0_A 266 K--KVLMQK------------------------QPIDFCAPAISQY--IALEYL-KRGYFEKYHLEGALLGYKEKRDIML 316 (407)
T ss_dssp H--HHHHHH------------------------TTTTSSSCHHHHH--HHHHHH-HTTHHHHHTTTTHHHHHHHHHHHHH
T ss_pred H--HHHHHH------------------------HhhcCCCCHHHHH--HHHHHH-HcCCchHHHHHHHHHHHHHHHHHHH
Confidence 1 111000 0011122222221 112222 11 1 334566777778888888
Q ss_pred HhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 393 GRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 393 ~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
+.|.+ +|++++..+. .+.+.+...+. +++..++.+.|.+++||.+++|..|..+.
T Consensus 317 ~~L~~~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~------ 372 (407)
T 2zc0_A 317 KALENHLPNAEFTKPI----AGMFVMFFLPE--------------GADGISFANELMEREGVVVVPGKPFYTDE------ 372 (407)
T ss_dssp HHHHHHCTTSCBCCCS----BSSEEEEECST--------------TCCHHHHHHHHHHHTCEECBCSGGGCSSS------
T ss_pred HHHHHhCCCCEEecCC----CcEEEEEEcCC--------------CCCHHHHHHHHHHhCCeEEECchhccCCC------
Confidence 88876 5777665542 34444333331 23467888888776699999987664210
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++++||+++.. +++|+++++++|++++.+.
T Consensus 373 -------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 373 -------------------SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp -------------------CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 0248999999877 8999999999999987653
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-25 Score=238.33 Aligned_cols=344 Identities=10% Similarity=0.024 Sum_probs=233.0
Q ss_pred ccccCCCCCCceEeccCCCC--CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE
Q 043646 67 VEFDYSFGKRRLTYADHTAS--GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF 144 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~~--~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif 144 (625)
..+..+-| +.+++|..+.. .+.++.+.+++.+.+..+....+. +.......+..+++++++++++|.+. .+++
T Consensus 51 ~~~~~~~g-~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~--~~~~~g~~~~~~~l~~~la~~~g~~~--~i~~ 125 (409)
T 3kki_A 51 LVLGKQAS-PDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFM--SASFLQNDYDKPMIEKRLAKFTGFDE--CLLS 125 (409)
T ss_dssp TTCCCCCC-TTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCS--BGGGGCSTTTSCHHHHHHHHHHTCSE--EEEE
T ss_pred eeeCCCCC-CceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCc--cccccCCcHHHHHHHHHHHHHhCCCe--EEEe
Confidence 34444545 33444433321 124678999998888653222211 22222234556779999999999863 3555
Q ss_pred eCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHH
Q 043646 145 CGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQ 224 (625)
Q Consensus 145 t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~ 224 (625)
+ +|+ +++..++.++ +++||. |+++.++|+++..+++..|++++.++. .|+++|+++
T Consensus 126 ~-sGt-~a~~~~l~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le~~ 181 (409)
T 3kki_A 126 Q-SGW-NANVGLLQTI---------------CQPNTN--VYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLRML 181 (409)
T ss_dssp S-CHH-HHHHHHHHHH---------------CCTTCE--EEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHHHH
T ss_pred c-chH-HHHHHHHHHh---------------cCCCCE--EEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHHHH
Confidence 4 787 5555555555 478885 999999999999999999999988875 589999999
Q ss_pred HHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC----CCC-CCCCcEEEEcCCCC
Q 043646 225 LELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR----SRN-IDGYDAIFLATHKF 299 (625)
Q Consensus 225 l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~----~~~-~~~~D~v~~S~hK~ 299 (625)
+++ .++++|++++++||||.+.|+++|.++|++||+++|+|++++.+.....-. ..+ ...+|+++.|++|+
T Consensus 182 l~~----~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~ 257 (409)
T 3kki_A 182 IQR----HGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKT 257 (409)
T ss_dssp HHH----HCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSST
T ss_pred HHh----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchh
Confidence 985 357999999999999999999999999999999999999998754321100 000 12579999999999
Q ss_pred CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHHHHHHHhhcCH
Q 043646 300 LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAALAFWVKEYIGY 377 (625)
Q Consensus 300 lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal~~~~~~~~g~ 377 (625)
++++ | |+++.++++. +.+.... ....+. ++.+... .+.++++.. +..
T Consensus 258 ~~~~-g-g~v~~~~~~~--~~~~~~~----------------------~~~~~~-~~~~~~~~aa~~aal~~~--~~~-- 306 (409)
T 3kki_A 258 FAYR-A-GAIWCNNEVN--RCVPFIS----------------------YPAIFS-STLLPYEAAGLETTLEII--ESA-- 306 (409)
T ss_dssp TCSS-C-EEEEESSSGG--GTHHHHC----------------------HHHHHS-BCCCHHHHHHHHHHHHHH--HHC--
T ss_pred hCCC-c-eEEEECHHHH--HHHHHhC----------------------cCcccc-CCCcHHHHHHHHHHHHHH--hcC--
Confidence 9865 4 8999888772 2211000 001111 1222222 223444443 222
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
+.+.++.+++++++.+.|.++ ++++.+ ...++.+.+.... ...++.+.|.+ .||.+++
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-----~~~~~~~~~~~~~---------------~~~~~~~~L~~-~Gv~v~~ 364 (409)
T 3kki_A 307 DNRRQHLDRMARKLRIGLSQL-GLTIRS-----ESQIIGLETGDER---------------NTEKVRDYLES-NGVFGSV 364 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TCCCCC-----SSSEEEEEEESHH---------------HHHHHHHHHHH-TTEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCccCC-----CCCEEEEEeCCHH---------------HHHHHHHHHHH-CCceEee
Confidence 567778888899999999887 665542 3456655553211 23468888866 5999987
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++.+..+. .++++||+++.+++++|+++++++|++++..
T Consensus 365 ~~~~~~~~--------------------------~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 365 FCRPATSK--------------------------NKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ECTTSSCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCcCC--------------------------CCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 66543221 2589999999999999999999999998765
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=243.17 Aligned_cols=332 Identities=14% Similarity=0.032 Sum_probs=229.8
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
.++|+.+... +.++.+.+++.+.+.. .+. |... ....++++.++++++++++ +|++| +|+++++..+
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~----y~~~----~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~a~~~~ 94 (381)
T 1v2d_A 27 AVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ----YAPP----AGLPALREALAEEFAVEPE-SVVVT-SGATEALYVL 94 (381)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTT--SCS----CCCT----TCCHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHH--hcC----CCCC----CCCHHHHHHHHHhcCCChh-hEEEc-CChHHHHHHH
Confidence 3444443332 3568899999887753 111 1111 1245688999999999876 79998 7888888888
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC---CCCCCCHHHHHHHHHHhhhCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD---DNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~---~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
+.++ +++||+ |+++.+.|+++...++..|++++.++.+ +++.+|+++|+++++ ++
T Consensus 95 ~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~-----~~ 152 (381)
T 1v2d_A 95 LQSL---------------VGPGDE--VVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-----PR 152 (381)
T ss_dssp HHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-----TT
T ss_pred HHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC-----cC
Confidence 8776 467875 8999999999988888899999999987 456789999999886 57
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
+++|++++++||||.+.| +++|+++|++||+++|+|++++.... +.++..+ ..+.|+++.|+||+++.|+ .+
T Consensus 153 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~ 231 (381)
T 1v2d_A 153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATGYRV 231 (381)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCC
T ss_pred CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcccce
Confidence 899999999999999976 78999999999999999999875432 2232211 1367999999999997442 27
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~ 384 (625)
|++++++++.+ .+.. .......+++.... +.+++.... ...+.+.+.++.
T Consensus 232 G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~ 283 (381)
T 1v2d_A 232 GWIVGPKEFMP--RLAG-------------------------MRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGY 283 (381)
T ss_dssp EEEECCTTTHH--HHHH-------------------------HHHHHTSSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred EEEEeCHHHHH--HHHH-------------------------HHhhcccCCCcHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 99999877621 1100 01111223333222 223333211 133467788888
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+.+++++.+.|.+. +++++.+. .+.+.+...+. . ++.+.| +++||.+++|..|...
T Consensus 284 ~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-----------------~-~~~~~l-~~~gi~v~~g~~~~~~ 339 (381)
T 1v2d_A 284 RRRRDLLAGGLRAM-GLRVYVPE----GTYFLMAELPG-----------------W-DAFRLV-EEARVALIPASAFYLE 339 (381)
T ss_dssp HHHHHHHHHHHHHT-TCCEECCS----BSSEEEEECTT-----------------C-CHHHHH-HHTCEECEEGGGGCSS
T ss_pred HHHHHHHHHHHHHC-CCEecCCC----cceEEEEecCh-----------------H-hHHHHH-HhCCEEEecchHhCCC
Confidence 88999999999875 78877653 24343333331 0 255555 5689999988776521
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
. ..++++||+++. +++++++++++|++++++.
T Consensus 340 ~-------------------------~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 340 D-------------------------PPKDLFRFAFCK--TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp S-------------------------CCTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred C-------------------------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 0 024899999986 8999999999999887654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=240.90 Aligned_cols=356 Identities=14% Similarity=0.042 Sum_probs=234.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCC-C-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLP-F-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTA 151 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~-~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGtta 151 (625)
.++.|+.+... ++++.+.+++.+.+.. . ...+. .....++.+.+.+++.+.+|. +++ +|++| +|+++
T Consensus 45 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t-~g~t~ 116 (437)
T 3g0t_A 45 KFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN------LDGLPELKQEASRFAKLFVNIDIPAR-ACVPT-VGSMQ 116 (437)
T ss_dssp CCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHH
T ss_pred CEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC------CCChHHHHHHHHHHHHHhhCCCCCcc-cEEEe-CCHHH
Confidence 45666655443 3468899998887742 1 11111 111233444444444444443 344 89998 78999
Q ss_pred HHHHHHHHhcccccchhhhhhhhcc--CCCC--ceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSL--RDEE--RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLE 226 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l--~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~ 226 (625)
++..++.++ + ++|| + |+++.+.|+++...++..|++++.+++++ +..+|+++|++++.
T Consensus 117 al~~~~~~l---------------~~~~~gd~~~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 117 GCFVSFLVA---------------NRTHKNREYG--TLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp HHHHHHHHH---------------TTSCTTCSCC--EEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred HHHHHHHHH---------------hcCCCCCccE--EEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 999988876 3 6888 7 88889999999888898999999999975 44689999999994
Q ss_pred HhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc--ccC-------CCCC-CCCCcEEE
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK--INL-------RSRN-IDGYDAIF 293 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~--id~-------~~~~-~~~~D~v~ 293 (625)
. +++++|++++++||||.+.| +++|+++|++||+++|+|++++..... ..+ ..+. ..+.++++
T Consensus 180 ~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (437)
T 3g0t_A 180 T----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILA 255 (437)
T ss_dssp T----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEE
T ss_pred c----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEE
Confidence 2 57999999999999999987 677899999999999999998753221 111 1111 12567889
Q ss_pred EcCCCCCCCC-CCceEEEEeccccccC-CCCCcc--cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHH
Q 043646 294 LATHKFLGGP-GTPGILLISKALYQLG-SSPPST--CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369 (625)
Q Consensus 294 ~S~hK~lggp-~g~G~l~v~~~~~~l~-~~~p~~--~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~ 369 (625)
.|+||++|.| .++|++++++++. . ...... .+++.. ...++... ......+++......+ ..+
T Consensus 256 ~s~sK~~~~~G~r~G~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~a~-~~~ 322 (437)
T 3g0t_A 256 LSSSKAFSYAGQRIGVLMISGKLY--EREYPDLEESFGRLRF---------GEALSSSA-LYALSSGATHSAQWGM-AAM 322 (437)
T ss_dssp EESTTTTSCGGGCCEEEEECHHHH--HCBCGGGHHHHSCSBH---------HHHHHTTH-HHHHHSSSCHHHHHHH-HHH
T ss_pred EcCccCCCCccceeEEEEECHHHh--hhhhhcccccccccch---------hHHHHHHH-HhhhcCCCCHHHHHHH-HHH
Confidence 9999999733 3489999988773 2 211110 000000 00001111 1111233333332221 222
Q ss_pred HHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEe------CCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 370 WVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVL------GNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 370 ~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~------~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
+.....+ .+.+.++...+++++.+.|.++ ++++. .+. ..+.+.+...++ ++.
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~~~ 383 (437)
T 3g0t_A 323 LKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPL---ADGFYFTVGYKG---------------MDS 383 (437)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEEC---CSSSEEEEEETT---------------CCH
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCC---ceeEEEEEecCC---------------CCH
Confidence 2111112 7788889999999999999988 88887 231 123333433332 346
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++.+.|.+ +||.+++|..|+.. .++++|||+++ .+++|+++++++|++++
T Consensus 384 ~~l~~~L~~-~gi~v~~~~~~~~~---------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~~ 434 (437)
T 3g0t_A 384 SKLIEKFVR-YGMCAITLKTTGSK---------------------------RNEAMRICTSL-LPESQFPDLEKRLQMLN 434 (437)
T ss_dssp HHHHHHHHH-TTEECEESTTTTCC---------------------------CTTCEEEECSS-SCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCeEEeeccccCCC---------------------------CCCEEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 788998866 69999998877521 23789999994 49999999999999987
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
++
T Consensus 435 ~~ 436 (437)
T 3g0t_A 435 AE 436 (437)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=237.94 Aligned_cols=339 Identities=11% Similarity=0.008 Sum_probs=227.8
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..++|+.+.... .++.+.+++.+.+... .. .|.......++.+++.+++.+.+|. +++ +|++| +|++++
T Consensus 31 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~v~~t-~g~~~a 103 (391)
T 3h14_A 31 RRIIHMEVGQPGTGAPRGAVEALAKSLETD----AL-GYTVALGLPALRQRIARLYGEWYGVDLDPG-RVVIT-PGSSGG 103 (391)
T ss_dssp CCCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEe-cChHHH
Confidence 3566776655443 4678999998877431 00 1111111344555555555555564 444 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++++.+ ..+|+++|+++
T Consensus 104 l~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------ 160 (391)
T 3h14_A 104 FLLAFTAL---------------FDSGDR--VGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------ 160 (391)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS------
T ss_pred HHHHHHHh---------------cCCCCE--EEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc------
Confidence 99888877 478885 889999999998889999999999999864 36799888654
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCCCCCCcEEEEcCCCCCCCC-
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRNIDGYDAIFLATHKFLGGP- 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~~~~~D~v~~S~hK~lggp- 303 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++.... +...... ...++++.|++|++|.|
T Consensus 161 --~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G 236 (391)
T 3h14_A 161 --DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL--TDECYVINSFSKYFSMTG 236 (391)
T ss_dssp --CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CSSSEEEEESSSTTCCTT
T ss_pred --CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc--CCCEEEEEechhccCCcc
Confidence 5899999999999999988 88899999999999999999875332 2222221 24568888999999734
Q ss_pred CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 304 GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 304 ~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.++|++++++++.. .+.. ......++++......+ .+.+ ......+.+.++
T Consensus 237 ~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~-~~~l-~~~~~~~~~~~~ 287 (391)
T 3h14_A 237 WRVGWMVVPEDQVR--VVER-------------------------IAQNMFICAPHASQVAA-LAAL-DCDAELQANLDV 287 (391)
T ss_dssp SCCEEEECCGGGHH--HHHH-------------------------HHHHTTCCCCHHHHHHH-HHHT-TCHHHHHHHHHH
T ss_pred ceeEEEEeCHHHHH--HHHH-------------------------HHhhhccCCCHHHHHHH-HHHh-CChHHHHHHHHH
Confidence 34799998877621 1100 01111233333332211 1111 122345677778
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+.+++++.+.|.+++...+..+ ..+.+.+...+.. +.+..++.+.|.+++||.+++|..|+.
T Consensus 288 ~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~gi~v~~g~~~~~ 350 (391)
T 3h14_A 288 YKANRKLMLERLPKAGFTRIAPP----DGAFYVYADVSDL-------------TDDSRAFAAEILEKAGVAVTPGLDFDP 350 (391)
T ss_dssp HHHHHHHHHHHHHHHTCCCBCCC----CBTTEEEEECTTT-------------CSCHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred HHHHHHHHHHHHHHcCCCcccCC----CeeEEEEEecCcc-------------CCCHHHHHHHHHHHCCEEEcCchhhCC
Confidence 88888899998887633322333 2344444433321 234678888887777999999988863
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+. .++++||+++. +++|++.++++|++++.+
T Consensus 351 ~~--------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 351 ER--------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp TT--------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CC--------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 11 24899999986 789999999999998765
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=237.31 Aligned_cols=333 Identities=14% Similarity=0.060 Sum_probs=229.1
Q ss_pred eEeccCCCCC----cchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 78 LTYADHTASG----RSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 78 ~~Yld~~~~~----~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
..|+|.+++. ++++.+.+++.+.+... ..++.. .+.. .......++++.+++++|.+ +.+++++|+ ++
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~--g~~~~~~~l~~~la~~~g~~---~~i~~~sGt-~a 111 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS-GHVS--GYSVVHQALEEELAEWLGYS---RALLFISGF-AA 111 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSB-TTTT--CCCHHHHHHHHHHHHHHTCS---EEEEESCHH-HH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCc-Cccc--CChHHHHHHHHHHHHHhCCC---cEEEeCCcH-HH
Confidence 4577776633 46789999998877432 111111 1111 12356788999999999985 344555885 55
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||. |+++.++|.++...++..|++++.+|. .|+++|++++++. .+
T Consensus 112 ~~~~~~~~---------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~--~~ 167 (384)
T 1bs0_A 112 NQAVIAAM---------------MAKEDR--IAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASP--CP 167 (384)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSC--CS
T ss_pred HHHHHHHh---------------CCCCcE--EEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhc--CC
Confidence 66666665 467874 899999999999899989999999984 4899999999741 12
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc---ccC-CCCCCCCCcEEEEcCCCCCCCCCCceE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK---INL-RSRNIDGYDAIFLATHKFLGGPGTPGI 308 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~---id~-~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (625)
++++|++++++||||.+.|+++|.++|++||+++|+|++++.+... ..+ ..++ .++|+++.|+||+++ |.| |+
T Consensus 168 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G-G~ 244 (384)
T 1bs0_A 168 GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG-AA 244 (384)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-EE
T ss_pred CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-cE
Confidence 4789999999999999999999999999999999999999876432 111 1111 257999999999998 666 99
Q ss_pred EEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC-ChhHHHH--HHHHHHHHHHhhcCHHHHHHHHH
Q 043646 309 LLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG-TPQIVQM--IRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 309 l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g-t~~~~~~--~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
+++++++.. .+.+. ...+..+ +++.... +.++++.. +....+.+.++.+
T Consensus 245 ~~~~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~ 296 (384)
T 1bs0_A 245 VLCSSTVAD--YLLQF------------------------ARHLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLA 296 (384)
T ss_dssp EEECHHHHH--HHHHH------------------------CHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHH
T ss_pred EEeCHHHHH--HHHHh------------------------chhhhcCCCCCHHHHHHHHHHHHHH--hccccHHHHHHHH
Confidence 999877622 11100 0011111 2333332 23444443 2113457788888
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
++++++.+.|.++ ++++..+ .++++.+.+... .+..++.+.|.+ .||.+++|..++.+.
T Consensus 297 ~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~~---------------~~~~~l~~~l~~-~gi~v~~~~~~~~~~ 355 (384)
T 1bs0_A 297 ALITRFRAGVQDL-PFTLADS----CSAIQPLIVGDN---------------SRALQLAEKLRQ-QGCWVTAIRPPTVPA 355 (384)
T ss_dssp HHHHHHHHHHTTS-SCEECSC----CSSBCCEEEESH---------------HHHHHHHHHHHH-TTEECCEECTTSSCT
T ss_pred HHHHHHHHHHHhc-CCcccCC----CCCEEEEEeCCH---------------HHHHHHHHHHHH-CCcEEEeecCCCCCC
Confidence 9999999999987 6777632 334444444211 124578888866 599999876543110
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+++||+++.+++++|+++++++|+++
T Consensus 356 --------------------------~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 356 --------------------------GTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp --------------------------TCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred --------------------------CCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 2489999999999999999999999865
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=238.23 Aligned_cols=340 Identities=10% Similarity=0.028 Sum_probs=231.7
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHH-HHHHHHHHHHHHhC--CCCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTK-MVHEASNYIKRCLG--GGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~-~~~~~~~~ia~~~g--~~~~~~vift~sGtta 151 (625)
+..++|..+... +.++.|.+++.+.+... .. .|... ..+ +.+++.+++.+.+| .+++ +|++| +|+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~~lr~~la~~l~~~~g~~~~~~-~v~~t-~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG----VF-GYSRW--KNDEFLAAIAHWFSTQHYTAIDSQ-TVVYG-PSVIY 98 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC----CC-CCCCS--CCHHHHHHHHHHHHHHSCCCCCGG-GEEEE-SCHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC----CC-CCCCC--ChHHHHHHHHHHHHHhcCCCCCHH-HEEEc-CCHHH
Confidence 456777665543 46788999998877421 11 11111 233 55556666666667 4444 89998 78898
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC---CCCHHHHHHHHHHh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG---LLDIEALRSQLELY 228 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~---~ld~~~L~~~l~~~ 228 (625)
++..++.++ +++||+ |++..+.|+++...++..|++++.+|++.++ .+|+++|++++++
T Consensus 99 al~~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~- 160 (390)
T 1d2f_A 99 MVSELIRQW---------------SETGEG--VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK- 160 (390)
T ss_dssp HHHHHHHHS---------------SCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-
T ss_pred HHHHHHHHh---------------cCCCCE--EEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-
Confidence 899988876 467875 8888999999988888899999999987532 4899999999973
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCC-cEEEEcCCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGY-DAIFLATHKFL 300 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~-D~v~~S~hK~l 300 (625)
.++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+.. .+ |. +.|++|++
T Consensus 161 ---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~-~~~d~-~~s~sK~~ 235 (390)
T 1d2f_A 161 ---PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR-GDWAL-LTSGSKSF 235 (390)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCC-SSEEE-EECSHHHH
T ss_pred ---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcch-hhHhh-ccCccHhh
Confidence 37899999999999999987 78999999999999999999886432 223332211 22 67 89999999
Q ss_pred CCCC-CceEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhh-hhcCCChhHHHHHH--HHHHHHHHhhc
Q 043646 301 GGPG-TPGILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE-RENGGTPQIVQMIR--AALAFWVKEYI 375 (625)
Q Consensus 301 ggp~-g~G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~-~~~~gt~~~~~~~~--aal~~~~~~~~ 375 (625)
|.|+ .+|+++++ +++. +.+.+. .. ....++++..+... +++.. ...
T Consensus 236 ~~~G~r~G~~~~~~~~~~--~~~~~~------------------------~~~~~~~~~~~~~~~~a~~~~l~~---~~~ 286 (390)
T 1d2f_A 236 NIPALTGAYGIIENSSSR--DAYLSA------------------------LKGRDGLSSPSVLALTAHIAAYQQ---GAP 286 (390)
T ss_dssp TCGGGCCEEEEECSHHHH--HHHHHH------------------------HHTTSCCCSCCHHHHHHHHHHHHH---CHH
T ss_pred cccChhheEEEECCHHHH--HHHHHH------------------------HhhhcccCCCCHHHHHHHHHHHhc---CHH
Confidence 7443 37999986 4542 111100 01 11223444444322 22221 122
Q ss_pred CHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 376 GYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 376 g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
..+.+.++.+.+++++.+.|.+ +|+++++.+ .++.+.+...+.. +++..++.+.|.+++||.
T Consensus 287 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~gi~ 349 (390)
T 1d2f_A 287 WLDALRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDLRPL-------------NIDDNALQKALIEQEKVA 349 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEECGGG-------------CCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC----CccEEEEEEcccc-------------CCCHHHHHHHHHHHcCEE
Confidence 3566777888888999999987 788876654 3455544433320 134667888887568999
Q ss_pred eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 455 ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 455 v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++|..|... .++++||+++. ++++++.+++.|++++.+
T Consensus 350 v~~g~~f~~~---------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 350 IMPGYTYGEE---------------------------GRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CEEGGGGCGG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred eeCccccCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 9998776410 24899999985 589999999999988754
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=240.66 Aligned_cols=342 Identities=13% Similarity=0.070 Sum_probs=232.6
Q ss_pred ceEeccCCCCCc---chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASGR---SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~~---~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal 153 (625)
..++|+.+...+ +++.+.+++.+.+.... .....|.. .....++++.+++++|.+++ +|++| +|+++++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~y~~----~~~~~~l~~~la~~~g~~~~-~v~~~-~g~~~al 104 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAARILREKG--EVALQYSP----TEGYAPLRAFVAEWIGVRPE-EVLIT-TGSQQAL 104 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHHHHHHHH--HHHTSCCC----TTCCHHHHHHHHHHHTSCGG-GEEEE-SHHHHHH
T ss_pred CceecCCCCCCchhCCHHHHHHHHHHHHHhcc--hhhhCCCC----CCCCHHHHHHHHHHhCCChh-hEEEe-ccHHHHH
Confidence 467776654332 56788888877664210 00000100 11245688899999997665 89998 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.++.++++ +|+++|++++++ .+
T Consensus 105 ~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~----~~ 162 (397)
T 2zyj_A 105 DLVGKVF---------------LDEGSP--VLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR----ER 162 (397)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH----CC
T ss_pred HHHHHHh---------------CCCCCE--EEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh----cC
Confidence 9888877 467875 8888899999988888899999999987665 899999999984 36
Q ss_pred CeEE-EEecccCccccccCHH---HHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCC---CCcEEEEcCCCCCCC
Q 043646 234 PMLG-SFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV----KINLRSRNID---GYDAIFLATHKFLGG 302 (625)
Q Consensus 234 ~~lv-~~~~~~n~TG~~~~l~---~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~---~~D~v~~S~hK~lgg 302 (625)
+++| ++++++||||.+.|.+ +|+++|++||+++|+|++++.... +.++..+..+ +..+++.|+||+++
T Consensus 163 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~- 241 (397)
T 2zyj_A 163 PRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS- 241 (397)
T ss_dssp CSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-
T ss_pred CeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-
Confidence 8877 5799999999998855 899999999999999999886432 2233322111 22378889999998
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh--cCHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY--IGYEV 379 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~--~g~~~ 379 (625)
|+ ++|++++++++.. .+.+ .......+++.+.+. ++.+++ ... ...+.
T Consensus 242 ~G~r~G~~~~~~~~~~--~l~~------------------------~~~~~~~~~~~~~~~--a~~~~l-~~~~~~~~~~ 292 (397)
T 2zyj_A 242 PGLRVAFAVAHPEALQ--KLVQ------------------------AKQGADLHTPMLNQM--LVHELL-KEGFSERLER 292 (397)
T ss_dssp GGGCCEEEECCHHHHH--HHHH------------------------HHHHHHSSCCHHHHH--HHHHHH-TTTHHHHHHH
T ss_pred ccceeEEEecCHHHHH--HHHH------------------------HHHhhcCCCCHHHHH--HHHHHH-HhCCHHHHHH
Confidence 53 5799999877621 1110 011122344333332 222232 111 12456
Q ss_pred HHHHHHHHHHHHHHhhCC-CC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec
Q 043646 380 IKKQEDVYIESALGRILP-NQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~-l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
+.++.+.+++++.+.|.+ +| ++++..+. .+.+.+...+. +++..++.+.|.+ +||.+++
T Consensus 293 ~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~----~g~~~~~~~~~--------------~~~~~~~~~~l~~-~gi~v~~ 353 (397)
T 2zyj_A 293 VRRVYREKAQAMLHALDREVPKEVRYTRPK----GGMFVWMELPK--------------GLSAEGLFRRALE-ENVAFVP 353 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSEECCCS----BSSEEEEECST--------------TCCHHHHHHHHHH-TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEccCC----ccEEEEEEcCC--------------CCCHHHHHHHHHH-CCCEEec
Confidence 667777788888888876 57 68876553 24444443331 2346688888876 5999998
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
|..|... +..++++||+++.. +++|+++++++|++++++.
T Consensus 354 g~~f~~~-------------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 354 GGPFFAN-------------------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp SGGGCTT-------------------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCC-------------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8766411 00248999999875 8999999999999988664
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=241.90 Aligned_cols=331 Identities=13% Similarity=-0.001 Sum_probs=227.0
Q ss_pred CceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaa 152 (625)
+..++|+.+.... .++.+.+++.+.+.... . .|.......++.+++.+++.+.+| .+++ +|++| +|++++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~~~a 101 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK----T-HYTDSRGILELREKISELYKDKYKADIIPD-NIIIT-GGSSLG 101 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHSSCCCCGG-GEEEE-SSHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcCc----c-CCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEC-CChHHH
Confidence 3577888776653 46889999888774310 0 111111223444555555555455 3444 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++ +|+++|+++++ +
T Consensus 102 ~~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~-----~ 153 (370)
T 2z61_A 102 LFFALSSI---------------IDDGDE--VLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALS-----D 153 (370)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCC-----S
T ss_pred HHHHHHHh---------------cCCCCE--EEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcc-----c
Confidence 98888877 467875 99999999999988988999999988 68999999887 4
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-CCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-NIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
++++|++++++||||.+.|.+ |.++|++||+++|+|++++.+.. +.++..+ ...+.|+++.|+||++|.|+ .+|
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 154 KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 789999999999999999999 99999999999999999886543 2233222 12367899999999997343 279
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~ 385 (625)
++++++++.. .+.+. .. ...++++..... .++++.+ .....+.+.++.+
T Consensus 233 ~~~~~~~~~~--~~~~~------------------------~~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~ 283 (370)
T 2z61_A 233 YVISNDEIIE--AILKL------------------------QQ-NLFISAPTISQYAALKAFEKE--TEREINSMIKEFD 283 (370)
T ss_dssp EEECCHHHHH--HHHHH------------------------HH-HHTSSSCHHHHHHHGGGGSHH--HHHHHHHHHHHHH
T ss_pred EEEECHHHHH--HHHHH------------------------Hh-hcccCCCHHHHHHHHHHHhcc--CHHHHHHHHHHHH
Confidence 9999887621 11100 00 111233333221 1222210 1223456777888
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
.+++++.+.|.++ ++++..+. .+.+.+...+. +..++.+.|.+++||.+++|..|+..
T Consensus 284 ~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~----------------~~~~~~~~l~~~~gi~v~~g~~f~~~- 341 (370)
T 2z61_A 284 RRRRLVLKYVKDF-GWEVNNPI----GAYYVFPNIGE----------------DGREFAYKLLKEKFVALTPGIGFGSK- 341 (370)
T ss_dssp HHHHHHHHHHHHT-TCBCCCCC----BTTEECCBCSS----------------CHHHHHHHHHHHHCEECEEGGGGCGG-
T ss_pred HHHHHHHHHHHHc-CCeecCCC----cceEEEEecCC----------------CHHHHHHHHHHhCCEEEeCchhhCCC-
Confidence 8889999999877 77665442 34444333321 35678888865689999988766410
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +++++++.+++.|++++.
T Consensus 342 --------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 342 --------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp --------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred --------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 1488999998 699999999999998763
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=240.02 Aligned_cols=329 Identities=12% Similarity=0.068 Sum_probs=224.4
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
+..+||+++..+++++.+.+++.+.+.. +...+ ......+++++++++++| . +++++||++ +++++..
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~-----~~~~~----~~~~~~~~l~~~la~~~g-~-~~~v~~~~~-gt~a~~~ 74 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSSG-----QAGPY----GTDELTAQVKRKFCEIFE-R-DVEVFLVPT-GTAANAL 74 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTSS-----CCCST----TCSHHHHHHHHHHHHHHT-S-CCEEEEESC-HHHHHHH
T ss_pred CceEeeccCCccCCCHHHHHHHHhhccC-----ccccc----ccchHHHHHHHHHHHHhC-C-CCcEEEeCC-ccHHHHH
Confidence 4578898888888889999999887531 11111 123567889999999999 4 336899854 5555666
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHc--CCeEEEEecCCCCCCCHHHHHH-HHHHh--
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQS--LAEVVEIGLDDNGLLDIEALRS-QLELY-- 228 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~--G~~vv~v~~~~~~~ld~~~L~~-~l~~~-- 228 (625)
++.++ +++||+ |+++.++|++.... +... |++++.++.+ ++.+|+++|++ ++++.
T Consensus 75 al~~~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~ 136 (356)
T 1v72_A 75 CLSAM---------------TPPWGN--IYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGD 136 (356)
T ss_dssp HHHTS---------------CCTTEE--EEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTC
T ss_pred HHHHh---------------cCCCCE--EEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchh
Confidence 66554 467774 99999999887655 7777 9999999875 46899999999 88731
Q ss_pred hhCCCCeEEEEecccCcccc---ccCHHHHHHHHHHcCCEEEEeccCcCCC---ccccCCCCCC-CCCcEEEEcCCCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGI---YSDTRSIARLLHQYGGFACFDFAASGPY---VKINLRSRNI-DGYDAIFLATHKFLG 301 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~---~~~l~~I~~la~~~g~~vivD~A~~~g~---~~id~~~~~~-~~~D~v~~S~hK~lg 301 (625)
...+++++|++++++| ||. ..++++|.++|++||+++|+|++++.+. .......... .++|++++|+||+ |
T Consensus 137 ~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g 214 (356)
T 1v72_A 137 VHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-G 214 (356)
T ss_dssp TTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-T
T ss_pred hccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-C
Confidence 0112689999999876 999 4558899999999999999999976321 1111111110 1679999999999 7
Q ss_pred CCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC---hhHHHHHHHHHHHHHHhhcCHH
Q 043646 302 GPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT---PQIVQMIRAALAFWVKEYIGYE 378 (625)
Q Consensus 302 gp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~~aal~~~~~~~~g~~ 378 (625)
+|.|+|++++++++.. .+.... ...|+ ...... .++++++ +...++
T Consensus 215 ~~~G~g~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~-~~~~~~l--~~~~~~ 263 (356)
T 1v72_A 215 VLAAEAIVLFNTSLAT--EMSYRR--------------------------KRAGHLSSKMRFLS-AQIDAYL--TDDLWL 263 (356)
T ss_dssp CSSCEEEEESSGGGHH--HHHHHH--------------------------HHTTCCCSSTHHHH-HHHHHHT--STTHHH
T ss_pred CcCccEEEEECHHHHh--hHHHHh--------------------------hccCchhhhHHHHH-HHHHHHH--HhhhHH
Confidence 7887788888877621 111000 00111 111111 1222332 222244
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 379 VIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 379 ~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
.+.++.+.+++++.+.|.+++++++..+. ...++.+.+ + .++.+.|.+ +||.+++|
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~~~~~~~~~-~-------------------~~~~~~l~~-~gi~v~~g 319 (356)
T 1v72_A 264 RNARKANAAAQRLAQGLEGLGGVEVLGGT---EANILFCRL-D-------------------SAMIDALLK-AGFGFYHD 319 (356)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESCC---CSSEEEEEE-C-------------------HHHHHHHHH-TTCBCBCS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEccCC---CccEEEEEc-C-------------------HHHHHHHHh-cCeEEecc
Confidence 56677788899999999998899987653 233333322 2 267888854 79999876
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. +. ++++||++++.++++|+++++++|++++++
T Consensus 320 ~-~~------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 320 R-WG------------------------------PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp S-SS------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred c-cC------------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 5 21 278999999999999999999999987654
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-26 Score=241.33 Aligned_cols=342 Identities=12% Similarity=0.041 Sum_probs=231.6
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QAD-AIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~-~vift~sGttaal 153 (625)
..++|+.+... +.++.+.+++.+.+... .. .|.......++.+++.+++++.+|.+ ..+ +|++| +|+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~-~g~~~a~ 104 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVT-AGATEAL 104 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEE-SSHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHhh----cc-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEc-CChHHHH
Confidence 35677766543 35688999998877431 00 11111223556666777777777864 334 79998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~ 232 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++.+. ++.+|+++|+++++ +
T Consensus 105 ~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~ 162 (386)
T 1u08_A 105 YAAITAL---------------VRNGDE--VICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-----E 162 (386)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-----T
T ss_pred HHHHHHh---------------CCCCCE--EEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc-----c
Confidence 8888876 467875 88899999999888888999999999876 56799999999986 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ...+..+. ..+.|+++.|+||++|.|+
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 242 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG 242 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc
Confidence 7999999999999999986 68899999999999999999875221 11222110 1257899999999997333
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~ 383 (625)
.+|++++++++.. .+.+. .. ....+.+..... ++...+.......+.+.++
T Consensus 243 ~r~G~~~~~~~~~~--~l~~~------------------------~~-~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~ 294 (386)
T 1u08_A 243 WKVGYCVAPAPISA--EIRKV------------------------HQ-YLTFSVNTPAQL-ALADMLRAEPEHYLALPDF 294 (386)
T ss_dssp GCCEEEECCHHHHH--HHHHH------------------------HH-HHTSSCCHHHHH-HHHHHHHHCTHHHHTHHHH
T ss_pred cceEEEEcCHHHHH--HHHHH------------------------HH-hhccCCChHHHH-HHHHHHhCCcHHHHHHHHH
Confidence 2799999877621 11100 00 111222222221 1122221112335677888
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG 463 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~ 463 (625)
.+.+++++.+.|.++ ++++..+. .+.+.+...+.. ...+..++.+.|.+++||.+++|..|..
T Consensus 295 ~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~------------~~~~~~~~~~~l~~~~gi~v~~g~~f~~ 357 (386)
T 1u08_A 295 YRQKRDILVNALNES-RLEILPCE----GTYFLLVDYSAV------------STLDDVEFCQWLTQEHGVAAIPLSVFCA 357 (386)
T ss_dssp HHHHHHHHHHHTTSS-SCEECCCC----BSSEEEEECTTT------------CCSCHHHHHHHHHHHSCEECEEGGGGCS
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----ceEEEEEecCCC------------CCCCHHHHHHHHHHhCCEEEeCchHhCC
Confidence 888999999999987 78876553 233333333321 0134667888776668999998865431
Q ss_pred hhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 464 PYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
.. ..++++||+++ ++++++++++++|++
T Consensus 358 ~~-------------------------~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 358 DP-------------------------FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp SC-------------------------CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred CC-------------------------CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 10 02589999997 489999999998863
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=239.91 Aligned_cols=349 Identities=10% Similarity=0.032 Sum_probs=229.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
..+.|..+... ..++.+.+++.+.+... ....|.......++.+.+.+++.+.+|. +++++|++| +|+++++
T Consensus 38 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t-~g~~~a~ 112 (412)
T 2x5d_A 38 DIIDLSMGNPDGPTPPHIVEKLCTVAQRE----DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVT-IGSKEGL 112 (412)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHTC-------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SCHHHHH
T ss_pred CEEecCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc-CChHHHH
Confidence 45566555433 35678999988876431 0101111111234444444444444486 331389998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-C-CCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-G-LLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~-~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++.+.+ + .+|+++|+++++
T Consensus 113 ~~~~~~~---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~----- 170 (412)
T 2x5d_A 113 AHLMLAT---------------LDHGDT--ILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI----- 170 (412)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE-----
T ss_pred HHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc-----
Confidence 9888876 467885 999999999998888889999999998864 3 378899988886
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ..++..+. ..+.|+++.|+||++|.|
T Consensus 171 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 250 (412)
T 2x5d_A 171 PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMA 250 (412)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCT
T ss_pred cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCc
Confidence 57899999999999999977 58899999999999999999886542 22333221 125689999999999744
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++++++.. .+.. .......+.+...... +.+++.......+.+.+
T Consensus 251 G~r~G~~~~~~~~~~--~l~~-------------------------~~~~~~~~~~~~~~~a-~~~~l~~~~~~~~~~~~ 302 (412)
T 2x5d_A 251 GWRIGFMVGNPELVS--ALAR-------------------------IKSYHDYGTFTPLQVA-AIAALEGDQQCVRDIAR 302 (412)
T ss_dssp TSCCEEEEECHHHHH--HHHH-------------------------HHHHHCCCCCHHHHHH-HHHHHHSCSHHHHHHHH
T ss_pred ccceEEEEcCHHHHH--HHHH-------------------------HHhhhccCCCHHHHHH-HHHHHhCCHHHHHHHHH
Confidence 4 4799999877621 1110 0011112333333222 22222111223567778
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.+.+++++.+.|.++ +++++.+ ..+.+.+...+... ...+..++++.|.+++||.+++|..|.
T Consensus 303 ~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~gi~v~~g~~f~ 366 (412)
T 2x5d_A 303 QYQQRRDVLVKGLREA-GWMVENP----KASMYVWAKIPEPY-----------AHLGSLEFAKKLLQDAKVSVSPGIGFG 366 (412)
T ss_dssp HHHHHHHHHHHHHHHH-TCCCCCC----SBSSEEEEECCTTT-----------GGGCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHC-CCEecCC----CeeeEEEEEcCCcc-----------CCCCHHHHHHHHHHHCCEEEeCchhhC
Confidence 8888899999998876 6665543 33544444333110 001356788888666799999987764
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
.. .++++||+++. ++++++.+++.|++++.+...
T Consensus 367 ~~---------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 367 DY---------------------------GDDHVRFALIE--NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp GG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred CC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCC
Confidence 11 14899999986 899999999999999877543
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=240.17 Aligned_cols=354 Identities=14% Similarity=0.074 Sum_probs=224.3
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|...+-..+.++.+.+++. .. .. +.++.......+++++++++++|.+ ++++++ |.++++..++
T Consensus 23 pi~~s~~~~~~~~~~~~~~~~--~~----~~----~~y~~~~~~~~~~l~~~la~~~g~~---~~~~~~-~gt~a~~~al 88 (412)
T 2cb1_A 23 PIYAVAAYGFKTLEEGQERFA--TG----EG----YVYARQKDPTAKALEERLKALEGAL---EAVVLA-SGQAATFAAL 88 (412)
T ss_dssp CCCCCSBCCCSSHHHHHHHHH--HC----CS----CSBTTTCCHHHHHHHHHHHHHHTCS---EEEEES-SHHHHHHHHH
T ss_pred CccccceeecCChHHHHHHhc--cc----cC----cCcCCCCChHHHHHHHHHHHHhCCC---cEEEEC-CHHHHHHHHH
Confidence 456655555567777776653 11 11 1122223356788999999999975 688884 5566777777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++..+|+++...+.. .|++++.++.+ +++|+++++ ++
T Consensus 89 ~~l---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~-----~~ 140 (412)
T 2cb1_A 89 LAL---------------LRPGDE--VVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE------PEAVREALS-----AK 140 (412)
T ss_dssp HTT---------------CCTTCE--EEEETTCCHHHHHHHHHTTTTTTCEEEEECSS------HHHHHHHCC-----TT
T ss_pred HHH---------------hCCCCE--EEEeCCCchhHHHHHHHHHHHcCCEEEEECCC------HHHHHHHhc-----cC
Confidence 665 467885 99999999988777643 68999999863 889999887 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEe
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLIS 312 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~ 312 (625)
+++|++++++|+||.+.|+++|+++|++||+++|+|++++.+......... +.|++++|+||++++|++ +|++++.
T Consensus 141 ~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~di~~~S~~K~~~~~~~~~G~~~~~ 217 (412)
T 2cb1_A 141 TRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAW---GAHVVVESLTKWASGHGSVLGGAVLS 217 (412)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGG---TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCcccc---CCeEEEECCcccccCCCCcEEEEEEe
Confidence 999999999999999999999999999999999999999877222211122 789999999999998876 7888876
Q ss_pred cccccc---CCC-CCcccCCceEEeeccccccccccccchhhh--hcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 313 KALYQL---GSS-PPSTCGGGTVNYVNAFDEKDTLYLEDIEER--ENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 313 ~~~~~l---~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~--~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
++.... ..+ .|...|+. +...+. ...+....... ...|. .+... +++.+. ....++...++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~g~~---~~~~~~--~~~~~~~~r~~~~~~~g~~~~~~~---a~~~~~--~l~~l~~~~~~~~ 287 (412)
T 2cb1_A 218 RETELWRNYPQFLQPDLKGQI---PWEALR--ARCFPERVRTLGLSLCGMALSPFN---AYLLFQ--GLETVALRVARMS 287 (412)
T ss_dssp CCCSGGGGSGGGGCC----------HHHHG--GGHHHHHHHHHHTTTTCCCCCHHH---HHHHHH--HGGGHHHHHHHHH
T ss_pred ccccccccccccccccccccc---hhhccc--hHHHHHHHHHHHHHhcCCCCChHH---hHHHHc--CCchHHHHHHHHH
Confidence 632110 001 12221111 000000 00111111110 01121 11111 111111 1112344455566
Q ss_pred HHHHHHHHhhCCCCcEEEe-CCCC-------------CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhc
Q 043646 386 VYIESALGRILPNQNIQVL-GNTS-------------VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLF 451 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~-~~~~-------------~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~ 451 (625)
.+++++.+.|.+.+++.++ .|.. ....++++|.+ . . ...+.+.| ++.
T Consensus 288 ~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~----------------~~~~~~~l-~~~ 348 (412)
T 2cb1_A 288 ETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D----------------LERASRFL-GAI 348 (412)
T ss_dssp HHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S----------------HHHHHHHH-HHC
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C----------------HHHHHHHH-HhC
Confidence 7899999999988888744 3321 13577888888 3 2 45666666 557
Q ss_pred CeeeecC---------CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 452 GIQARGG---------CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 452 gI~v~~G---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
||.+ +| ++|+.+. +. .+......+ .|+.++.+|+|++.++++++++.++++|++
T Consensus 349 ~i~~-~~s~g~~~sl~~~~~~~~-~~--~~~~~~~~~---------~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 349 RLLK-AANLGDARTLLVHPWTTT-HS--RLKEEARLQ---------AGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SSEE-CSCCSCSSCEEECTTTTT-TT--TSCHHHHHH---------TTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred Ceee-ecccCCCcceeecCcccc-cc--cCCHHHHHh---------cCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 9999 88 4665321 11 111110000 234479999999999999999999999874
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=237.61 Aligned_cols=345 Identities=10% Similarity=0.021 Sum_probs=231.7
Q ss_pred cccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEE
Q 043646 68 EFDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAII 143 (625)
Q Consensus 68 ~~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vi 143 (625)
.+++..| +.++.|..+... +.++.|.+++.+.+.. ... |.. .. .++.+.+.+++.+.+| .+++ +|+
T Consensus 16 ~~~d~~g-~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~------y~~-~~-~~lr~~la~~~~~~~~~~~~~~-~i~ 85 (377)
T 3fdb_A 16 MKWTRYG-QGVLPLWVAESDFSTCPAVLQAITDAVQREAFG------YQP-DG-SLLSQATAEFYADRYGYQARPE-WIF 85 (377)
T ss_dssp HHHHSSC-TTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCS------SCC-SS-CCHHHHHHHHHHHHHCCCCCGG-GEE
T ss_pred ceeeccC-CCeeeecccCCCCCCCHHHHHHHHHHHHcCCCC------CCC-CC-HHHHHHHHHHHHHHhCCCCCHH-HEE
Confidence 3444455 456677655433 4678999999887753 111 111 11 2344445555555555 4444 899
Q ss_pred EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHH
Q 043646 144 FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRS 223 (625)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~ 223 (625)
+| +|+++++..++.++ +++||+ |+++.+.|+++...++..|++++.++.+.+ +|+++|++
T Consensus 86 ~t-~g~~~a~~~~~~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~ 145 (377)
T 3fdb_A 86 PI-PDVVRGLYIAIDHF---------------TPAQSK--VIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEK 145 (377)
T ss_dssp EE-SCHHHHHHHHHHHH---------------SCTTCC--EEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHH
T ss_pred Ee-CChHHHHHHHHHHh---------------cCCCCE--EEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHH
Confidence 98 78888898888877 478886 888999999998888889999999999876 99999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC-----ccccCCCCCCCCCcEEEEc
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-----VKINLRSRNIDGYDAIFLA 295 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-----~~id~~~~~~~~~D~v~~S 295 (625)
+++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++......+.++++.|
T Consensus 146 ~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s 220 (377)
T 3fdb_A 146 GFQ-----AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITA 220 (377)
T ss_dssp HHH-----TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEEC
T ss_pred Hhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEe
Confidence 998 46899999999999999986 5677778999999999999987522 2223322100133588899
Q ss_pred CCCCCCCCC-CceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh
Q 043646 296 THKFLGGPG-TPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE 373 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~ 373 (625)
++|++|.|+ .+|++++ ++++.. .+... . ....++++..+...+ .+.+...
T Consensus 221 ~sK~~g~~G~r~G~~~~~~~~~~~--~~~~~------------------------~-~~~~~~~~~~~~~a~-~~~l~~~ 272 (377)
T 3fdb_A 221 PSKAWNIAGLKCAQIIFSNPSDAE--HWQQL------------------------S-PVIKDGASTLGLIAA-EAAYRYG 272 (377)
T ss_dssp STTTTTCGGGCCEEEECCSHHHHH--HHHHS------------------------C-HHHHCCCCHHHHHHH-HHHHHHC
T ss_pred ChHhccCcchhheEEEeCCHHHHH--HHHHH------------------------H-HhhcCCCCHHHHHHH-HHHHhcc
Confidence 999997443 4788777 444421 11000 0 011123333332221 2222111
Q ss_pred hcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 374 YIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 374 ~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
....+.+.++.+.+++++.+.|++ +|+++++.+. .+.+.+...+.. +.+ .++.+.|.+++|
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~~~~~~~~~~~~-------------~~~-~~~~~~l~~~~g 334 (377)
T 3fdb_A 273 TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQ----ATYLMWIDFRDT-------------TIE-GSPSEFFIEKAK 334 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCS----BCSEEEEECTTS-------------CCC-SCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----eeEEEEEECccc-------------CCC-HHHHHHHHHhCC
Confidence 223567778888889999999987 7899987653 344444333321 112 356677767679
Q ss_pred eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 453 IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 453 I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+++|..|+.+ .++++|||++ ++++++++++++|++++.+
T Consensus 335 i~v~~g~~~~~~---------------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 335 VAMNDGAWFGED---------------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp EECEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred EEecCChhccCC---------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 999999877622 1489999998 3899999999999988754
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=242.56 Aligned_cols=351 Identities=13% Similarity=0.019 Sum_probs=233.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QAD-AIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~-~vift~sGttaal 153 (625)
..++|+.+... +.++.+.+++.+.+... .. .|.......++.+++.+++.+.+|.+ ..+ +|++| +|+++++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t-~g~~~al 99 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGG----VN-QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVT-VGATEAI 99 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-EHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEe-CCHHHHH
Confidence 35677766554 45688999998887431 00 12112223456666777777777864 233 79998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC---CCCCHHHHHHHHHHhhh
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN---GLLDIEALRSQLELYKA 230 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~---~~ld~~~L~~~l~~~~~ 230 (625)
..++.++ +++||+ |+++.+.|+++...++..|++++.++++.+ +.+|+++|+++++
T Consensus 100 ~~~~~~~---------------~~~gd~--Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---- 158 (411)
T 2o0r_A 100 AAAVLGL---------------VEPGSE--VLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT---- 158 (411)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC----
T ss_pred HHHHHHh---------------cCCCCE--EEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc----
Confidence 9888877 467885 999999999998888889999999998653 4689999999987
Q ss_pred CCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S~hK~lgg 302 (625)
+++++|++++++||||.+.|. ++|+++|++||+++|+|++++.+.. +..+..+. ..+.|+++.|+||++|.
T Consensus 159 -~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (411)
T 2o0r_A 159 -PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNC 237 (411)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred -cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCC
Confidence 578999999999999999774 8999999999999999999886432 12222221 12579999999999973
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH-HHHHHHHHHHHhhcCHHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ-MIRAALAFWVKEYIGYEVI 380 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~~aal~~~~~~~~g~~~i 380 (625)
|+ .+|++++++++.. .+.+. ......+.++..+ .+.++++. .....+.+
T Consensus 238 ~G~r~G~~~~~~~~~~--~l~~~------------------------~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~ 288 (411)
T 2o0r_A 238 TGWKIGWACGPAELIA--GVRAA------------------------KQYLSYVGGAPFQPAVALALDT---EDAWVAAL 288 (411)
T ss_dssp TTTCEEEEECCHHHHH--HHHHH------------------------HHHHTSCCCTTHHHHHHHHHHH---CHHHHHHH
T ss_pred ccceEEEEeeCHHHHH--HHHHH------------------------HhhccCCCChHHHHHHHHHHhC---ChHHHHHH
Confidence 43 2899999877621 11100 0001112222222 11222221 12235677
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC
Q 043646 381 KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
.++.+.+++++.+.|.++ ++++..+. .+.+.+...+.. ...+..++.+.|.+++||.+++|..
T Consensus 289 ~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~------------~~~~~~~~~~~l~~~~gi~v~~g~~ 351 (411)
T 2o0r_A 289 RNSLRARRDRLAAGLTEI-GFAVHDSY----GTYFLCADPRPL------------GYDDSTEFCAALPEKVGVAAIPMSA 351 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCEECCCC----BSSEEEEECGGG------------TCCCHHHHHHHHHHHHSEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHc-CCEecCCC----eeEEEEEecCCC------------CCCCHHHHHHHHHHhCCEEEcChhh
Confidence 788888899999999876 78876542 343433333321 0134567888776668999999877
Q ss_pred CCchh---hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 461 CAGPY---GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 461 ~~~~~---~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.... .+.+... .++++||+++ ++++|+++++++|+++++.
T Consensus 352 f~~~~~~~~~~~~~~-------------------~~~~iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 352 FCDPAAGQASQQADV-------------------WNHLVRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp GSCCC--------CC-------------------GGGCEEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred hCCCccccccccccC-------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 63211 1111110 1478999997 3899999999999876543
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=244.98 Aligned_cols=342 Identities=14% Similarity=0.072 Sum_probs=223.0
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.+.+++.+.+.... +. .....+++++.+++++|.+ +++|+++| ++++..++.+++
T Consensus 16 ~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~---~~i~~~sg-t~al~~~l~~l~-------- 72 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNW-------FI----LGDEDKKFEQEFADYCNVN---YCIGCGNG-LDALHLILKGYD-------- 72 (373)
T ss_dssp HHHHHHHHHHHHHHTC-------CS----SSHHHHHHHHHHHHHHTSS---EEEEESCH-HHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHCCC-------cc----CCchHHHHHHHHHHHhCCC---eEEEeCCH-HHHHHHHHHHcC--------
Confidence 4567777766653211 11 1245678999999999985 67888555 556777777663
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||+ |+++..+|+++..+++..|++++.++++ .++.+|+++|+++++ +++++|+ ++|+||.
T Consensus 73 ------~~~gd~--Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~v~---~~n~~G~ 136 (373)
T 3frk_A 73 ------IGFGDE--VIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAIT-----EKTKAII---AVHLYGQ 136 (373)
T ss_dssp ------CCTTCE--EEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCC-----TTEEEEE---EECCTTC
T ss_pred ------CCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcC-----CCCeEEE---EECCCcC
Confidence 468885 9999999999999999999999999998 467899999999887 5788877 6789999
Q ss_pred ccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEc--CCCCCCCCCCceEEEEeccccccCCCCCccc
Q 043646 249 YSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLISKALYQLGSSPPSTC 326 (625)
Q Consensus 249 ~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ 326 (625)
+.|+++|.++|+++|+++|+|+||+.|.. ++.+.... ..|++++| .||++++++..|+++.++... .+.+.+...
T Consensus 137 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~~~~~~-~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~-~~~~~~~~~ 213 (373)
T 3frk_A 137 PADMDEIKRIAKKYNLKLIEDAAQAHGSL-YKGMKVGS-LGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL-AEKIKALSN 213 (373)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCCSSSCEEEEESCHHH-HHHHHHHHB
T ss_pred cccHHHHHHHHHHcCCEEEEECCcccCCE-ECCEeccc-cccEEEEeCcCCCccCccceeEEEEeCCHHH-HHHHHHHHh
Confidence 99999999999999999999999998766 55544411 26899888 559998635457777765421 112222222
Q ss_pred CCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCC
Q 043646 327 GGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGN 406 (625)
Q Consensus 327 ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~ 406 (625)
+|... .+. ....|.+.....+.+++.+. ...+.+.+.++.+.+++++.+.|.+++ +++...
T Consensus 214 ~g~~~-----------~~~-----~~~~g~~~~~~~~~aa~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 274 (373)
T 3frk_A 214 YGSEK-----------KYH-----HIYKGFNSRLDELQAGFLRV--KLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVE 274 (373)
T ss_dssp TTCSB-----------TTB-----CCSCCCBCCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCC
T ss_pred cCccc-----------CCc-----cccccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccC
Confidence 22210 000 01112110011112223332 234567788889999999999999987 766433
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC----CCchhhHhhhcCC---hhhHHH
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA----CAGPYGHTLLAFD---QTRSLE 479 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~----~~~~~~~~~l~~~---~~~~~~ 479 (625)
........+.|.+... +..++.+.|.+ .||.++.+.. |...+.. ++.. .+.+..
T Consensus 275 ~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 335 (373)
T 3frk_A 275 ADYAKHVWYTFVIRSE----------------KRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKD--LGFKTGNFPIAEK 335 (373)
T ss_dssp CTTEECCCSSEEEEES----------------SHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGG--GCCCTTSSHHHHH
T ss_pred CCCCceeeEEEEEEeC----------------CHHHHHHHHHH-CCCCcccCcCCccccChHHHh--cCCCCCCCHHHHH
Confidence 2111222233333221 25688888865 6999997652 2211111 1110 011111
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ ..+.+|++++.++|++||++++++|+++..+
T Consensus 336 ~-----------~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 336 I-----------ANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp H-----------HHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred H-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 1 1378999999999999999999999876433
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=236.65 Aligned_cols=322 Identities=12% Similarity=-0.003 Sum_probs=224.8
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCC----CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLP----FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~----~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
+.+++|+.+... ++++.|.+++.+.+.. ...++.. ...++++++++++|++++ +|++| +|++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~-~i~~t-~g~~ 92 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPS-WIIMA-NGSD 92 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGG-GEEEE-SSHH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcc-eEEEc-CCHH
Confidence 457888876554 4678999999888754 2222221 125689999999998766 89998 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
+++..++.++ +++||+ |+++.+.|+++...++..|++++.++.+.++.+ ++++++
T Consensus 93 ~al~~~~~~l---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~------ 147 (360)
T 3hdo_A 93 EVLNNLIRAF---------------AAEGEE--IGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--AGFPER------ 147 (360)
T ss_dssp HHHHHHHHHH---------------CCTTCE--EEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--TTCCSS------
T ss_pred HHHHHHHHHH---------------hCCCCE--EEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--HHHHhh------
Confidence 8899888877 578886 899999999998888999999999999876554 333221
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC--CccccCCCCCCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP--YVKINLRSRNIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g--~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
.+++++++++++||||.+.|+++|.++|+++|+++|+|++++.. .....+. ...+.++++.|++|++|.|+ ++|
T Consensus 148 -~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~g~~G~r~G 224 (360)
T 3hdo_A 148 -YEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELV--RRHENVVVTRTLSKSYSLAGMRIG 224 (360)
T ss_dssp -BCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHH--HHCSSEEEEEESTTTTSCTTSCCE
T ss_pred -cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHh--ccCCCEEEEecchHhhcCCcccee
Confidence 24679999999999999999999999999999999999998741 1111110 11244688889999997443 479
Q ss_pred EEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 308 ILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 308 ~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++++++.. .+. ......+++..+...+ .+.+ ......+.+.++.+++
T Consensus 225 ~~~~~~~~~~--~~~---------------------------~~~~~~~~~~~~~~a~-~~~l-~~~~~~~~~~~~~~~~ 273 (360)
T 3hdo_A 225 LAIARPEVIA--ALD---------------------------KIRDHYNLDRLAQAAC-VAAL-RDQAYLSECCRRIRET 273 (360)
T ss_dssp EEECCHHHHH--HHH---------------------------HHSCSCCSCHHHHHHH-HHHH-HCHHHHHHHHHHHHHH
T ss_pred eEeeCHHHHH--HHH---------------------------HhCCCCCCCHHHHHHH-HHHh-cCHHHHHHHHHHHHHH
Confidence 9998777621 110 0001122333332211 1222 1222356777888888
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++++.+.|.++ ++++..+ .+.++.+.+ ++ .+..++.+.|.+ +||.+++|....
T Consensus 274 ~~~l~~~L~~~-~~~~~~~----~~~~~~~~~-~~---------------~~~~~l~~~l~~-~gi~v~~~~~~~----- 326 (360)
T 3hdo_A 274 REWFTTELRSI-GYDVIPS----QGNYLFATP-PD---------------RDGKRVYDGLYA-RKVLVRHFSDPL----- 326 (360)
T ss_dssp HHHHHHHHHHT-TCEECCC----SSSEEEEEC-TT---------------CCHHHHHHHHHH-TTEECBCCCSTT-----
T ss_pred HHHHHHHHHHC-CCEEcCC----CccEEEEEC-CC---------------CCHHHHHHHHHH-CCEEEEECCCCC-----
Confidence 99999999887 7877643 334444332 21 246788888854 799998754311
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++|||++ +++|+++++++|+++.+..
T Consensus 327 ------------------------~~~~iRis~~---~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 327 ------------------------LAHGMRISIG---TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp ------------------------TTTSEEEECC---CHHHHHHHHHHHHHHHC--
T ss_pred ------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHhccc
Confidence 2488999997 9999999999999886543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=241.97 Aligned_cols=198 Identities=15% Similarity=0.139 Sum_probs=156.2
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
...|.|+.+.+...+.+.+++.. +.++.. .+.++.......+++++++++++|.+ + .+++ ++|+ +++..+
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~-~-~i~~-~sG~-~a~~~~ 95 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAAR-----FALEES-GYIYTRLGNPTTDALEKKLAVLERGE-A-GLAT-ASGI-SAITTT 95 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHH-----C------CCSBTTTCCHHHHHHHHHHHHHHTCS-E-EEEE-SSHH-HHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHHh-----hcCCCC-CCceeCCCChHHHHHHHHHHHHhCCC-c-EEEE-CCHH-HHHHHH
Confidence 46788888888887788777752 123322 12333334567888999999999986 2 4555 4777 778877
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+.++ +++||+ |+++.++|+++...+ +..|++++.++.+ |+++|+++++ +
T Consensus 96 l~~~---------------~~~gd~--vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~ 148 (398)
T 2rfv_A 96 LLTL---------------CQQGDH--IVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMR-----P 148 (398)
T ss_dssp HHHH---------------CCTTCE--EEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC-----T
T ss_pred HHHH---------------hCCCCE--EEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcC-----C
Confidence 7766 467875 999999999998777 6679999999875 8999999887 5
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILL 310 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~ 310 (625)
++++|++++++||||.+.|+++|+++|++||+++|+|++++.+.....+ .+ +.|+++.|+||+|++|++ .|+++
T Consensus 149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~---~~di~~~s~sK~~~~~g~~~~G~~~ 224 (398)
T 2rfv_A 149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-QL---GADIVVHSVTKYINGHGDVIGGIIV 224 (398)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCcEEEEeCcccccCCCCceEEEEE
Confidence 7999999999999999999999999999999999999999977654322 22 689999999999998876 59999
Q ss_pred Eeccc
Q 043646 311 ISKAL 315 (625)
Q Consensus 311 v~~~~ 315 (625)
+++++
T Consensus 225 ~~~~~ 229 (398)
T 2rfv_A 225 GKQEF 229 (398)
T ss_dssp ECHHH
T ss_pred ECHHH
Confidence 98876
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=243.47 Aligned_cols=362 Identities=10% Similarity=0.023 Sum_probs=234.3
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QAD-AIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~-~vift~sGttaal 153 (625)
..++|+.+... +.++.+.+++.+.+... +.....|.......++.+++.+++++.+|.+ ..+ +|++| +|+++++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~-~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSP--DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT-VGAYEAL 114 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCS--CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcc--ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEe-cChHHHH
Confidence 46777776554 45789999998887542 1111111111123456666667777667853 234 79998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC----------CCCCHHHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN----------GLLDIEALRS 223 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~----------~~ld~~~L~~ 223 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.+|.+.+ +.+|+++|++
T Consensus 115 ~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 177 (429)
T 1yiz_A 115 YATIQGH---------------VDEGDE--VIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEA 177 (429)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHH
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHH
Confidence 9888877 467875 888889999988888889999999998763 4689999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCC-CCCCcEEEEc
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRN-IDGYDAIFLA 295 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~-~~~~D~v~~S 295 (625)
+++ +++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ...+..+. ..+.|+++.|
T Consensus 178 ~l~-----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 252 (429)
T 1yiz_A 178 LFN-----EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS 252 (429)
T ss_dssp HCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEE
T ss_pred Hhc-----cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEec
Confidence 986 57899999999999999985 89999999999999999999874221 11222111 1267899999
Q ss_pred CCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHH-
Q 043646 296 THKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWV- 371 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~- 371 (625)
+||++|.|+ .+|++++++++.. .+.+. ......+.+.... +.+++...+
T Consensus 253 ~sK~~~~~G~r~G~~~~~~~~~~--~l~~~-------------------------~~~~~~~~~~~~~~a~~~~l~~~~~ 305 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYGPEALLK--NLQMV-------------------------HQNCVYTCATPIQEAIAVGFETELK 305 (429)
T ss_dssp HHHHHTCGGGCCEEEESCHHHHH--HHHHH-------------------------HHTTTCCCCHHHHHHHHHHHHHHHT
T ss_pred chhccCCCCcceEEEEeCHHHHH--HHHHH-------------------------HhhcccCCChHHHHHHHHHHhcccc
Confidence 999987332 2899999877621 11100 0011122222222 122222200
Q ss_pred --Hh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 372 --KE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 372 --~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
.. ....+.++++.+.+++++.+.|.++ ++++..+. .+.+.+...+....... .. ......+..++++.|.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~ 378 (429)
T 1yiz_A 306 RLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQ----GGYFMVADWSSLDSKVD-LT-QETDARKDYRFTKWMT 378 (429)
T ss_dssp TTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECS----BSSEEEEECCSSCTTTT-CC-SSSSSCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC----cceEEEEEccccccccc-cc-ccccCCCHHHHHHHHH
Confidence 00 2236677888888899999999876 77776542 34343333332100000 00 0000133567888776
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
+++||.+++|..|..+... + ..++++||+++ ++++++++++++|+++++
T Consensus 379 ~~~gv~v~~g~~f~~~~~~---~-------------------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 379 KSVGLQGIPPSAFYSEPNK---H-------------------LGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp HHTSEECBCGGGGSCGGGG---G-------------------GTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred HhCCEEEeCchHhCCCccc---C-------------------CCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 6689999988655422100 0 01489999998 489999999999988653
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=237.86 Aligned_cols=341 Identities=11% Similarity=0.057 Sum_probs=228.2
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTH-TSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~-~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGtta 151 (625)
+.++.|..+... ++++.+.+++.+.+... ++. ...|.......++.+++.+++.+.+|. +++ +|++| +|+++
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~~-~g~~~ 110 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNAD-NLYMT-MGAAA 110 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChH-HEEEc-cCHHH
Confidence 345666655433 46788999988877431 111 001111122356677777777777774 444 89998 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~ 229 (625)
++..++.++ +++| |+ |++..+.|+++...++..|++++.+|+++ ++.+|+++|+++++
T Consensus 111 al~~~~~~l---------------~~~g~d~--vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~--- 170 (398)
T 3ele_A 111 SLSICFRAL---------------TSDAYDE--FITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERIN--- 170 (398)
T ss_dssp HHHHHHHHH---------------CCSTTCE--EEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC---
T ss_pred HHHHHHHHH---------------cCCCCCE--EEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC---
Confidence 899988877 5788 85 88999999999888899999999999986 45899999999987
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHH------cCCEEEEeccCcCCCc-----cccCCCCCCCCCcEEEEc
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQ------YGGFACFDFAASGPYV-----KINLRSRNIDGYDAIFLA 295 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~------~g~~vivD~A~~~g~~-----~id~~~~~~~~~D~v~~S 295 (625)
+++++|++++++||||.+.| +++|+++|++ ||+++|+|++++.... +..... .+.++++.|
T Consensus 171 --~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~~~i~~~s 245 (398)
T 3ele_A 171 --AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKY---YDNTLVCYS 245 (398)
T ss_dssp --TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGT---CSSEEEEEE
T ss_pred --cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhh---cCCeEEEEe
Confidence 57999999999999999988 6677789998 9999999999875321 111111 255788899
Q ss_pred CCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh
Q 043646 296 THKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY 374 (625)
Q Consensus 296 ~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~ 374 (625)
++|++|.| ..+|++++++++.. .. ... ..+..........+++.... .++...+ +.
T Consensus 246 ~sK~~~~~G~r~G~~~~~~~~~~--~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~--~a~~~~l-~~ 302 (398)
T 3ele_A 246 YSKSLSLPGERIGYVLVPDEVYD--KA-ELY-----------------AAVCGAGRALGYVCAPSLFQ--KMIVKCQ-GA 302 (398)
T ss_dssp STTTSSCTTTCCEEEECCTTSTT--HH-HHH-----------------HHHHHHHHHTTCCCSCHHHH--HHHTTCT-TC
T ss_pred hhhcCCCccceeEEEEEcchhhh--HH-HHH-----------------HHHHHHhhhccccCCCHHHH--HHHHHHh-cC
Confidence 99999744 35899999887521 00 000 00000001111122222221 1111111 11
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
.. ..++.+.+++++.+.|.++ ++++..+. .+++.+...+. .+..++.+.|. ++||.
T Consensus 303 ~~---~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~l~-~~gi~ 358 (398)
T 3ele_A 303 TG---DINAYKENRDLLYEGLTRI-GYHCFKPD----GAFYMFVKALE---------------DDSNAFCEKAK-EEDVL 358 (398)
T ss_dssp CC---CHHHHHHHHHHHHHHHHHH-TCCEECCS----BSSEEEEECSS---------------SCHHHHHHHHH-TTTEE
T ss_pred HH---HHHHHHHHHHHHHHHHHHc-CCeecCCC----eeEEEEEEcCC---------------CCHHHHHHHHH-HCCEE
Confidence 11 3455666677788887765 67776553 35544444332 13667888885 57999
Q ss_pred eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 455 ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 455 v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+++|..|. .++++||+++ ++++++++++++|++++++.
T Consensus 359 v~~g~~~~-----------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 359 IVAADGFG-----------------------------CPGWVRISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp CEESGGGT-----------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 99988765 2489999997 69999999999999988653
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=239.82 Aligned_cols=339 Identities=14% Similarity=0.168 Sum_probs=210.7
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
..-.|+.+++...+.+.+++.. +.|+.. .+.+++......+++++.+++++|.+ + .++++ +|+ +++..++
T Consensus 28 ~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~-~-~i~~~-sG~-~a~~~~l 97 (398)
T 1gc0_A 28 LVPPVYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE-A-GLALA-SGM-GAITSTL 97 (398)
T ss_dssp SSCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS-E-EEEES-SHH-HHHHHHH
T ss_pred cCCCccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC-c-EEEEC-CHH-HHHHHHH
Confidence 4456777777776666666531 344433 23344445577889999999999986 2 45554 785 7788877
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++...|+++...+ +..|++++.++.+ |+++|+++++ ++
T Consensus 98 ~~~---------------~~~gd~--vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~-----~~ 150 (398)
T 1gc0_A 98 WTL---------------LRPGDE--VLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT-----PA 150 (398)
T ss_dssp HHH---------------CCTTCE--EEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TT
T ss_pred HHH---------------hcCCCE--EEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CC
Confidence 766 467875 999999999988777 4569999999864 8999999887 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLI 311 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v 311 (625)
+++|++++++||||.+.|+++|+++|+++|+++|+|++++.+.....+. . ++|+++.|+||++++|++ .|++++
T Consensus 151 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~-~---~~d~~~~S~sK~~~~~~~~~~G~l~~ 226 (398)
T 1gc0_A 151 TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLE-L---GADLVVHSATKYLSGHGDITAGIVVG 226 (398)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGG-G---TCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchh-h---CceEEEECCccccCCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999998765443332 2 789999999999998876 599998
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
+++... ..+.+.. .....++.+..... ..+++ ..+...++....++
T Consensus 227 ~~~~~~-~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~ 274 (398)
T 1gc0_A 227 SQALVD-RIRLQGL------------------------KDMTGAVLSPHDAALLMRGIK-------TLNLRMDRHCANAQ 274 (398)
T ss_dssp CHHHHH-HHHHTHH------------------------HHHTCCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHH
T ss_pred ChHHHH-HHHHHHh------------------------hccCCCCCCHHHHHHHHhccc-------hHHHHHHHHHHHHH
Confidence 877521 0111110 11012333333221 12222 12333444455566
Q ss_pred HHHHhhCCCCcE--------------EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeee
Q 043646 390 SALGRILPNQNI--------------QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQA 455 (625)
Q Consensus 390 ~l~~~L~~l~gv--------------~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v 455 (625)
++.+.|.+++.+ +++.+.....+++++|.+... ...+.+.+ ++.+|.+
T Consensus 275 ~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~~~~~~l-~~~~i~~ 336 (398)
T 1gc0_A 275 VLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG-----------------IGAGRRFM-NALQLFS 336 (398)
T ss_dssp HHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH-----------------HHHHHHHH-HHCSSSE
T ss_pred HHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC-----------------HHHHHHHH-HhCCCce
Confidence 666666655443 333321123567888866321 22455555 5578887
Q ss_pred ec---CCC------CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 456 RG---GCA------CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 456 ~~---G~~------~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+. |.. |... .| ..+...... ..|+.++++|||++..+++++++.+.++|+++
T Consensus 337 ~~~s~G~~~sl~~~~~~~-~~--~~~~~~~~~---------~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 337 RAVSLGDAESLAQHPASM-TH--SSYTPEERA---------HYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp ECSCCSCSSCEEECGGGT-TT--SSSCHHHHH---------HTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eccCCCCcceeeeccccc-cc--ccCCHHHHH---------hcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 65 422 2210 00 011110000 12445699999999999999999999999865
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=236.43 Aligned_cols=338 Identities=12% Similarity=0.025 Sum_probs=224.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-C-CCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-Q-ADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~-~~~vift~sGttaal 153 (625)
..+.|..+... ..++.+.+++.+.+.. +....|.......++.+.+.+++++.+|.+ . +++|++| +|+++++
T Consensus 26 ~~idl~~~~~~~~~~~~v~~a~~~~~~~----~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~-~g~~~a~ 100 (376)
T 2dou_A 26 GLIDLSIGSTDLPPPEAPLKALAEALND----PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALAL-IGSQEGL 100 (376)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHTTC----GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEE-SSHHHHH
T ss_pred CEEeccCCCCCCCCCHHHHHHHHHHHhC----CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEc-CCcHHHH
Confidence 34555554433 2467899999887743 111112221233444444555555555886 2 2279998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.+|++.+..+|+++|+++++ ++
T Consensus 101 ~~~~~~l---------------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-----~~ 158 (376)
T 2dou_A 101 AHLLLAL---------------TEPEDL--LLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVW-----RE 158 (376)
T ss_dssp HHHHHHH---------------CCTTCE--EEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHH-----HH
T ss_pred HHHHHHh---------------cCCCCE--EEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc-----cC
Confidence 8888877 467875 8889999999988888899999999984344689999999987 36
Q ss_pred CeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-CCCCCcEEEEcCCCCCCCCC-C
Q 043646 234 PMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-NIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~~~~~D~v~~S~hK~lggp~-g 305 (625)
+++|++++++||||.+.| +++|+++|++||+++|+|++++.... +.++... ...+.++++.|++|++|.|+ .
T Consensus 159 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGC
T ss_pred ceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhhe
Confidence 899999999999999987 67889999999999999999875321 1121111 11145788899999997443 4
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-hcCHHHHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-YIGYEVIKKQE 384 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-~~g~~~i~~~~ 384 (625)
+|++++++++.. .+... ......++ +..... ++.+.+ .. ....+.+.++.
T Consensus 239 ~G~~~~~~~~~~--~l~~~------------------------~~~~~~~~-~~~~~~-a~~~~l-~~~~~~~~~~~~~~ 289 (376)
T 2dou_A 239 LGFALGSEEALA--RLERV------------------------KGVIDFNQ-YAGVLR-MGVEAL-KTPKEVVRGYARVY 289 (376)
T ss_dssp CEEEEECHHHHH--HHHHH------------------------HHHHCCCS-CHHHHH-HHHHHH-TSCHHHHHHHHHHH
T ss_pred eEEEecCHHHHH--HHHHH------------------------HHhcccCC-CHHHHH-HHHHHH-hCcHHHHHHHHHHH
Confidence 799998877622 11100 01111222 322221 222222 11 12355667778
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+.+++++.+.|.++ +++..+ ..+.+.+...+. +++..++.+.|.++ ||.+++|..|+..
T Consensus 290 ~~~~~~l~~~L~~~--~~~~~~----~~~~~~~~~~~~--------------~~~~~~~~~~l~~~-gi~v~~g~~f~~~ 348 (376)
T 2dou_A 290 RERALGMAEALKGV--LSLLPP----RATMYLWGRLPE--------------GVDDLEFGLRLVER-GVALAPGRGFGPG 348 (376)
T ss_dssp HHHHHHHHHHHTTT--SEECCC----CBSSEEEEECCT--------------TCCHHHHHHHHHHT-TEECEEGGGGCGG
T ss_pred HHHHHHHHHHHHHh--cCccCC----CeeEEEEEECCC--------------CCCHHHHHHHHHHC-CEEEcCchhhCCC
Confidence 88899999999886 666544 235544444332 23456788888765 9999988776411
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++++||+++. ++++++.+++.|++++
T Consensus 349 ---------------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 349 ---------------------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp ---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred ---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 14899999974 8899999999998653
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=228.98 Aligned_cols=328 Identities=12% Similarity=0.029 Sum_probs=223.0
Q ss_pred EeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHH
Q 043646 79 TYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 79 ~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~ 155 (625)
++|+.+... +.++.+.+++.+.+.......+ .|..... .++.+.+.+++++.+|. +++ +|++| +|+++++..
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--~y~~~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~-~G~~~al~~ 107 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELN--RYPERDA-VELRDELAAYITKQTGVAVTRD-NLWAA-NGSNEILQQ 107 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTT--SCCCTTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccc--cCCCccH-HHHHHHHHHhhhhcccCCCChH-hEEEC-CChHHHHHH
Confidence 566655442 4667899998887743100000 1111111 24444455555555444 444 89998 899999998
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++.++ +++||+ |+++.++|+++...++..|++++.++.+.++.+|+++|++++++ .+++
T Consensus 108 ~~~~l---------------~~~gd~--Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~ 166 (369)
T 3cq5_A 108 LLQAF---------------GGPGRT--ALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA----KQPD 166 (369)
T ss_dssp HHHHH---------------CSTTCE--EEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH----HCCS
T ss_pred HHHHh---------------cCCCCE--EEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc----cCCC
Confidence 88877 467875 89999999999888888999999999887778999999999983 2689
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCC-CCCC-CcEEEEcCCCCCCCCC-CceEEEEe
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR-NIDG-YDAIFLATHKFLGGPG-TPGILLIS 312 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~-~~~~-~D~v~~S~hK~lggp~-g~G~l~v~ 312 (625)
+|++++++||||.+.|+++|.++++.+++++|+|++++.+....++... ...+ .++++.|+||++|.|+ .+|+++++
T Consensus 167 ~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 167 IVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 9999999999999999999999999999999999998865432221111 1113 5688999999997443 37999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
+++.. .+.+.. ...+++..... ++.+.+ ......+.+.++.+.+++++.
T Consensus 247 ~~~~~--~l~~~~---------------------------~~~~~~~~~~~-a~~~~l-~~~~~~~~~~~~~~~~~~~l~ 295 (369)
T 3cq5_A 247 PAFID--AVMLVR---------------------------LPYHLSALSQA-AAIVAL-RHSADTLGTVEKLSVERVRVA 295 (369)
T ss_dssp THHHH--HHHTTS---------------------------CTTCSCHHHHH-HHHHHH-HTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHcC---------------------------CCCCCCHHHHH-HHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 87632 111100 00122322221 112222 122234566777888888898
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
+.|.+. ++++..+ .+.++.+.+ + .+..++.+.|. ++||.+++| +
T Consensus 296 ~~L~~~-g~~~~~~----~~~~~~~~~-~----------------~~~~~l~~~l~-~~gi~v~~~---~---------- 339 (369)
T 3cq5_A 296 ARLEEL-GYAVVPS----ESNFVFFGD-F----------------SDQHAAWQAFL-DRGVLIRDV---G---------- 339 (369)
T ss_dssp HHHHHH-TCEEECC----SSSEEEEEC-C----------------SSHHHHHHHHH-HTTEECBCC---S----------
T ss_pred HHHHhC-CCEECCC----CCeEEEEEC-C----------------CCHHHHHHHHH-HCCEEEEEC---C----------
Confidence 888774 7777633 234444433 2 12567888885 589999876 1
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++ +++|+++++++|++++.
T Consensus 340 -------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 340 -------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 1378999998 89999999999998764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=238.66 Aligned_cols=299 Identities=11% Similarity=0.045 Sum_probs=197.7
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----H
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----Q 200 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~ 200 (625)
++++.+++++|++ + .++++ +| ++++..++.++ +++||+ |+++.++|+++...++ .
T Consensus 2 ~l~~~la~~~g~~-~-~i~~~-sG-~~a~~~~~~~~---------------~~~g~~--v~~~~~~~~~~~~~~~~~~~~ 60 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A-CAATA-SG-MGAIAASVWTF---------------LKAGDH--LISDDCLYGCTHALFEHQLRK 60 (331)
T ss_dssp HHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTCE--EEEESCCCHHHHHHHHTHHHH
T ss_pred hHHHHHHHHhCCC-e-EEEeC-Ch-HHHHHHHHHHh---------------cCCCCE--EEEcCCCcchHHHHHHHHHHh
Confidence 5789999999986 3 56665 78 57788887766 467875 9999999999877763 4
Q ss_pred cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEEEeccCcCCCccc
Q 043646 201 SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASGPYVKI 279 (625)
Q Consensus 201 ~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vivD~A~~~g~~~i 279 (625)
.|++++.++. .|+++|+++++ +++++|++++++||||.+.|+++|.++|++ +|+++++|++++.+....
T Consensus 61 ~g~~~~~~~~-----~d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~ 130 (331)
T 1pff_A 61 FGVEVDFIDM-----AVPGNIEKHLK-----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN 130 (331)
T ss_dssp TTCEEEEECT-----TSTTHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC
T ss_pred cCCEEEEeCC-----CCHHHHHHhhc-----CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC
Confidence 7999999986 37888988887 579999999999999999999999999999 999999999998776543
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccC-CceEEeeccccccccccccchhhhhcCC
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCG-GGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~g-gg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
++ .. +.|++++|+||+|++|++ .|++++++ ++. +.+.+...+ ++ +
T Consensus 131 ~~-~~---~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~--~~l~~~~~~~~~-------------------------~ 179 (331)
T 1pff_A 131 PL-DL---GVDIVVHSATKYINGHTDVVAGLVCSRADIIA--KVKSQGIKDITG-------------------------A 179 (331)
T ss_dssp GG-GG---TCSEEEEETTTTTSSSSSCCCEEEEECHHHHH--HHHHTCCCCCCC-------------------------C
T ss_pred hh-hc---CCcEEEEECccccCCCCCceEEEEEeCcHHHH--HHHHHHHHhhcC-------------------------C
Confidence 34 23 789999999999999887 79999988 662 222222211 11 1
Q ss_pred ChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH----------hhCCCCcEEEeCCCCCCCcceEEEEeccCC
Q 043646 356 TPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG----------RILPNQNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 356 t~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~----------~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
+.+..... ..++... ....+...+....+.+++.+ .|.++|+++++.+....++++++|.+.
T Consensus 180 ~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 253 (331)
T 1pff_A 180 IISPHDAWLITRGTLTL---DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--- 253 (331)
T ss_dssp CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS---
T ss_pred CCCHHHHHHHHcCcchH---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC---
Confidence 22222211 1223221 00122223333333333332 233334454443322235677777663
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecC---------CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG---------CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
+..++.+.| +++||.++.. ++|..+. + ..+...... ..|+.++
T Consensus 254 ---------------~~~~~~~~l-~~~gI~~~~~s~g~~~sl~~~~~~~~-~--~~~~~~~~~---------~~g~~~~ 305 (331)
T 1pff_A 254 ---------------GLEKAKKVL-DNCHVVSLAVSLGGPESLIQHPASMT-H--AGVPKEERE---------AAGLTDN 305 (331)
T ss_dssp ---------------SHHHHHHHH-HTCSSSEECSSCCSSSCEEECHHHHT-S--TTSCHHHHH---------HTTCCTT
T ss_pred ---------------CHHHHHHHH-HhCCCceeccCCCCcceeeecchhhc-c--cccCHHHHH---------hcCCCCC
Confidence 145677777 4589988765 3443221 1 001100000 1234468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++|||++.+++++++++++++|+++
T Consensus 306 ~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 306 LIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999753
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-25 Score=231.14 Aligned_cols=324 Identities=14% Similarity=0.009 Sum_probs=220.8
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..++|+.+... ..++.+.+++.+.+......+. ....++++.+++++|++++ +|++| +|+++++..
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~al~~ 91 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPAS-WILAG-NGETESIFT 91 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHH-HEEEC-CCHHHHHHH
Confidence 45666655432 3568899999887643111111 1246688999999998766 89998 788888988
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCC-HHHHHHHHHHhhhCCCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLD-IEALRSQLELYKAAKRP 234 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld-~~~L~~~l~~~~~~~~~ 234 (625)
++.++ +||+ |++..+.|+++...++..|++++.++.+....++ ++++.+.++ +++
T Consensus 92 ~~~~~-----------------~gd~--vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~-----~~~ 147 (364)
T 1lc5_A 92 VASGL-----------------KPRR--AMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALT-----PDL 147 (364)
T ss_dssp HHHHH-----------------CCSE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC-----TTC
T ss_pred HHHHc-----------------CCCe--EEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhcc-----CCC
Confidence 87754 4554 8888889999988888899999999987522234 344444443 578
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-Cc
Q 043646 235 MLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (625)
++|++++++||||.+.| +++|+++|++||+++|+|++++.... .++. ....+.|+++.|+||++|.|+ .+
T Consensus 148 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~r~ 225 (364)
T 1lc5_A 148 DCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPA--LKDNPHIWVLRSLTKFYAIPGLRL 225 (364)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGG--CTTCTTEEEEEESTTTTTCTTTCC
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhH--hccCCCEEEEEECchhhcCCccce
Confidence 99999999999999998 89999999999999999999875332 1221 111256888999999997554 37
Q ss_pred eEEE-EeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 043646 307 GILL-ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED 385 (625)
Q Consensus 307 G~l~-v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (625)
|+++ .++++.. .+.+. ....+++..... ++.+++ ......+.+.++.+
T Consensus 226 G~~~~~~~~~~~--~l~~~---------------------------~~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~ 274 (364)
T 1lc5_A 226 GYLVNSDDAAMA--RMRRQ---------------------------QMPWSVNALAAL-AGEVAL-QDSAWQQATWHWLR 274 (364)
T ss_dssp EEEECCCHHHHH--HHHHH---------------------------SCTTCSCHHHHH-HHHHGG-GCHHHHHHHHHHHH
T ss_pred EEEEECCHHHHH--HHHHh---------------------------CCCCCCCHHHHH-HHHHHH-hCcHHHHHHHHHHH
Confidence 9999 7777621 11100 011223333322 122222 12223566777788
Q ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh
Q 043646 386 VYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY 465 (625)
Q Consensus 386 ~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~ 465 (625)
.+++++.+.|.++|++++..+ .+.++.+.+ +.. ..++.+.|.+ +||.+++|..|...
T Consensus 275 ~~~~~l~~~L~~~~~~~~~~~----~g~~~~~~~-~~~----------------~~~l~~~l~~-~gi~v~~g~~~~~~- 331 (364)
T 1lc5_A 275 EEGARFYQALCQLPLLTVYPG----RANYLLLRC-ERE----------------DIDLQRRLLT-QRILIRSCANYPGL- 331 (364)
T ss_dssp HHHHHHHHHHHTSTTEEECCC----SSSEEEEEE-SCT----------------TCCHHHHHHT-TTEECEECTTSTTC-
T ss_pred HHHHHHHHHHhcCCCCEECCC----CCeEEEEEC-CCc----------------HHHHHHHHHH-CCcEEeeCcccCCC-
Confidence 889999999998889987643 344544433 211 2357777865 69999998776410
Q ss_pred hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 466 GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 466 ~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++ +.+|+++++++|+++++.
T Consensus 332 --------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 332 --------------------------DSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp --------------------------CTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred --------------------------CCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 2489999986 789999999999988654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-25 Score=233.62 Aligned_cols=364 Identities=13% Similarity=0.019 Sum_probs=232.7
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.+.+++.+.+...|.++ .+ ....++++.+++++|. + +++++ +|+++++..++.+++
T Consensus 11 ~~~v~~a~~~~~~~~~~~~------~g----~~~~~l~~~la~~~~~--~-~v~~~-~ggt~al~~~~~~l~-------- 68 (394)
T 1o69_A 11 GGNELKYIEEVFKSNYIAP------LG----EFVNRFEQSVKDYSKS--E-NALAL-NSATAALHLALRVAG-------- 68 (394)
T ss_dssp -CCHHHHHHHHHHHTTTSC------TT----HHHHHHHHHHHHHHCC--S-EEEEE-SCHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHcCCccC------CC----hHHHHHHHHHHHHhCC--C-cEEEe-CCHHHHHHHHHHHcC--------
Confidence 3467777777664322221 11 3567899999999997 3 78998 677788888888763
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~ 249 (625)
+++||+ |+++.++|+++...++..|++++.++++.++.+|+++|++++++. .+++++|++++ +||..
T Consensus 69 ------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~~~v~~~~---~~G~~ 135 (394)
T 1o69_A 69 ------VKQDDI--VLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKEC--EKKPKALILTH---LYGNA 135 (394)
T ss_dssp ------CCTTCE--EEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHC--SSCCCEEEEEC---GGGCC
T ss_pred ------CCCCCE--EEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcc--cCCceEEEEEC---CCCCh
Confidence 467885 999999999999999999999999999877889999999999841 11689999885 89999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-ccccccCCCCCcccCC
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQLGSSPPSTCGG 328 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l~~~~p~~~gg 328 (625)
.|+++|.++|+++|+++|+|++++.|....+.......++|++++|.||+++ |.++|+++++ +++. +.+.+...++
T Consensus 136 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~--~~l~~~~~~~ 212 (394)
T 1o69_A 136 AKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKI--EKARFYSTQA 212 (394)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHH--HHHHHHTBTC
T ss_pred hhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHH--HHHHHHHHhc
Confidence 9999999999999999999999997665433221111257888899999987 5568999996 5652 1221111111
Q ss_pred ceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS 408 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~ 408 (625)
.. . ...+...+.++..+++++.+.+..+ . ...++.+.++.+.+++++.+.|.++ ++++.+..
T Consensus 213 ~~--~--------~~~~~~~~~g~~~~~~~~~aa~~l~--~----l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~ 274 (394)
T 1o69_A 213 RE--N--------CLHYEHLDYGYNYRLSNVLGAIGVA--Q----MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELE 274 (394)
T ss_dssp CC--S--------SSSCCCSSCCCBCBCCHHHHHHHHH--H----HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCT
T ss_pred cc--c--------CccccccccCcccCcCHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCC
Confidence 00 0 0001112334556677776654322 1 1124556788888999999999887 66665421
Q ss_pred CCCcc--eEEEEeccCC-----CCCCccc-cccCCCCCChHHHHHHhhhhcCeeeecCCCCCc--hhhHhhh--cCChhh
Q 043646 409 VKRQA--ILSFLVYSTT-----NSSPENM-KIERNKPLHGPFVATLFNDLFGIQARGGCACAG--PYGHTLL--AFDQTR 476 (625)
Q Consensus 409 ~~~~~--i~~f~~~~~~-----~~~~~~~-~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l--~~~~~~ 476 (625)
..+.. ++.+.+.... ....... ......+++..++.+.|.+ +||.+++|..|.. |....+. ++. .
T Consensus 275 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~p~~~~~~~~~~~--~ 351 (394)
T 1o69_A 275 NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKN-KQIETRPLWKAMHTQEVFKGAKAYLNG--N 351 (394)
T ss_dssp TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGGGCGGGTTCEEEECS--H
T ss_pred CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHH-cCCcccccCCccccchhhhccCCCCCh--H
Confidence 11112 4555543210 0000000 0000012346678888855 7999999966521 2111000 010 1
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+.++ ....+|++.+.++|++|+++++++|++++..+
T Consensus 352 ~~~~-----------~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 352 SELF-----------FQKGICLPSGTAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp HHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred HHHH-----------hcCeEEccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 1100 01456777799999999999999999887654
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-26 Score=242.55 Aligned_cols=343 Identities=11% Similarity=0.014 Sum_probs=229.7
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal 153 (625)
..+.|+.+... ..++.+.+++.+.+... ....|.......++.+.+.+++++.+|.+ ++++|++| +|+++++
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t-~G~~~al 122 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIP----ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCIL-YGTKNGL 122 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCH----HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SSHHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEc-CCcHHHH
Confidence 35666655443 24678999988876421 00011111122344555555555555975 22389998 7888889
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC-CCCHHHHHHHHHHhhhCC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG-LLDIEALRSQLELYKAAK 232 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~-~ld~~~L~~~l~~~~~~~ 232 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.++.+.++ .+|+++|+++++ +
T Consensus 123 ~~~~~~l---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~ 180 (404)
T 2o1b_A 123 VAVPTCV---------------INPGDY--VLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQII-----D 180 (404)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-----H
T ss_pred HHHHHHh---------------cCCCCE--EEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhc-----c
Confidence 9888877 467875 8888899999988888899999999988633 589999999987 3
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCC-CCCCcEEEEcCCCCCCCCC-
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRN-IDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~-~~~~D~v~~S~hK~lggp~- 304 (625)
++++|++++++||||.+.| +++|+++|+++|+++|+|++++.... +.++..+. ..+.|+++.|+||+||.|+
T Consensus 181 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 181 KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh
Confidence 6899999999999999986 67899999999999999999886432 22222221 0135788999999997453
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQE 384 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~ 384 (625)
.+|++++++++.. .+.+ ......++++..... ++.+++.......+.+.++.
T Consensus 261 r~G~~~~~~~~~~--~l~~-------------------------~~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~ 312 (404)
T 2o1b_A 261 RVGFAVGNKDMIQ--ALKK-------------------------YQTHTNAGMFGALQD-AAIYALNHYDDFLEEQSNVF 312 (404)
T ss_dssp CCEEEEECHHHHH--HHHH-------------------------HHHHHCCCCCHHHHH-HHHHHHHHCHHHHHHHHHHH
T ss_pred heEeEecCHHHHH--HHHH-------------------------HHhhccCCCCHHHHH-HHHHHHhcCHHHHHHHHHHH
Confidence 4799998877621 1110 001111233333222 22222211122356677778
Q ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch
Q 043646 385 DVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP 464 (625)
Q Consensus 385 ~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~ 464 (625)
+.+++++.+.|.++ ++++..+ ..+++.+...+. +++..++.+.|.+++||.+++|..|+..
T Consensus 313 ~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~--------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~ 373 (404)
T 2o1b_A 313 KTRRDRFEAMLAKA-DLPFVHA----KGGIYVWLETPP--------------GYDSEQFEQFLVQEKSILVAPGKPFGEN 373 (404)
T ss_dssp HHHHHHHHHHHHHT-TCCEECC----CBSSEEEEECCT--------------TCCHHHHHHHHHHHHCEECEESGGGCGG
T ss_pred HHHHHHHHHHHHhc-CCeecCC----CcceEEEEeCCC--------------CCCHHHHHHHHHHHCCEEEeCchhhCcC
Confidence 88889999999877 7777654 235544443331 2345678888766689999998776411
Q ss_pred hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 465 YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++||+++. ++++++.+++.|++++++
T Consensus 374 ---------------------------~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 374 ---------------------------GNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp ---------------------------GTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred ---------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 14899999985 788999999999876543
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.6e-26 Score=238.84 Aligned_cols=353 Identities=12% Similarity=0.033 Sum_probs=228.8
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
++|.+...+....+.+++.+.+... .+. ......++++.+++++|.+ +++++++|+ +++..++.+
T Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt-~a~~~~~~~ 72 (374)
T 3uwc_A 8 YSYLERQFADIEPYLNDLREFIKTA-------DFT----LGAELEKFEKRFAALHNAP---HAIGVGTGT-DALAMSFKM 72 (374)
T ss_dssp SCCHHHHTSSCHHHHHHHHHHHHHT-------CCS----SCHHHHHHHHHHHHHTTCS---EEEEESCHH-HHHHHHHHH
T ss_pred eeccccCCCCchHHHHHHHHHHHcC-------Ccc----cChhHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHH
Confidence 3444333443333778877766321 011 1234677999999999986 578886665 557777776
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
++ +++||+ |+++.++|+++...++..|++++.++++.++.+|+++|+++++ +++++|+
T Consensus 73 ~~--------------~~~gd~--v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~- 130 (374)
T 3uwc_A 73 LN--------------IGAGDE--VITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAIT-----DKTKAIM- 130 (374)
T ss_dssp TT--------------CCTTCE--EEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCC-----TTEEEEC-
T ss_pred cC--------------CCCCCE--EEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCC-----CCceEEE-
Confidence 53 467885 9999999999998999999999999998778899999999887 4678776
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEeccccc
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH--KFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~~~~~ 317 (625)
++||||.+.|+++|.++|++||+++|+|++++.+.. ++...... ..|++++|+| |++++++..|+++.++...
T Consensus 131 --~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~-~~~~~~~~-~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~- 205 (374)
T 3uwc_A 131 --PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGR-INDKFVGS-WGQFACFSLHPLKNLNVWSDAGVIITHSDEY- 205 (374)
T ss_dssp --CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECSSSSSSCCSSCCEEEEESCHHH-
T ss_pred --EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCce-eCCeeccc-cccEEEEeCCCCCcCCccceeEEEEeCCHHH-
Confidence 789999999999999999999999999999998754 33333311 3699999988 9998645467877766431
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+.+.+...++....+. . ...+.......+.+++.+. ...+.+.+.++.+.+++++.+.|.+
T Consensus 206 ~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~~aa~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~ 267 (374)
T 3uwc_A 206 AEKLRLYRNHGLINRDV---------------C-VEYGINCRMDTIQAVIANR--LMNQLETITEKRRGIAHLYDQSFVD 267 (374)
T ss_dssp HHHHHHHTBTTEEETTE---------------E-SSCCCBCBCCHHHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHhcCccccCc---------------c-ccccccCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11122222222110000 0 0001110011112233332 3345677888889999999999999
Q ss_pred CCc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC----CCchhhHhhhcC
Q 043646 398 NQN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA----CAGPYGHTLLAF 472 (625)
Q Consensus 398 l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~----~~~~~~~~~l~~ 472 (625)
+++ +++...........+.|.+... +..++.+.|.+ +||.+++|.. |...+.. ++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~--~~~ 328 (374)
T 3uwc_A 268 LSEFIDVPVRREGVYHVFHIYVLRVK----------------YRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKS--LGY 328 (374)
T ss_dssp GTTTEECCCCCTTEECCCSSEEEEET----------------THHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGG--GCC
T ss_pred CCCeEEeccCCCCCceeeEEEEEEcC----------------CHHHHHHHHHH-CCCccccCCCCccccChhhhh--cCC
Confidence 887 8775432111111122333221 25678888865 6999998862 2111110 010
Q ss_pred C---hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 D---QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~---~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
. .+....+ ..+.+||+++.++|++||++++++|++++++
T Consensus 329 ~~~~~~~~~~~-----------~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 329 QQGDFPMAEKH-----------GEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp CTTSCHHHHHH-----------HHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCccHHHH-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 0000000 1378999999999999999999999998865
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=238.37 Aligned_cols=364 Identities=11% Similarity=0.040 Sum_probs=230.6
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.+.++.+.+++.+.+... +.+......+ ..++.+++++++++++|.+ +++++++|+ +++..++.+++
T Consensus 12 ~~~~~~~~~a~~~~~~~~--~~~~~~~~~g--~~~l~~~l~~~la~~~g~~---~~i~~~~gt-~al~~~~~~~~----- 78 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQSN--RWAISGYWTG--EESMERKFAKAFADFNGVP---YCVPTTSGS-TALMLALEALG----- 78 (418)
T ss_dssp SCCCHHHHHHHHHHHHHT--CCSTTSBCCS--SCCHHHHHHHHHHHHHTCS---EEEEESCHH-HHHHHHHHHTT-----
T ss_pred CCCCHHHHHHHHHHHhcC--CccccCcccC--CHHHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHHcC-----
Confidence 345688999988877432 1110001111 2455788999999999986 356665665 77888877763
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
+++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+++ |+
T Consensus 79 ---------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~---~~ 139 (418)
T 2c81_A 79 ---------IGEGDE--VIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAIT-----DKTKAIIPV---HL 139 (418)
T ss_dssp ---------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC-----TTEEEECCB---CC
T ss_pred ---------CCCcCE--EEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC-----CCCeEEEEe---CC
Confidence 467885 99999999999999999999999999986 67899999999887 578888764 58
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEc--CCCCCCCCCCceEEEEe-ccccccCCCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLIS-KALYQLGSSP 322 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~l~v~-~~~~~l~~~~ 322 (625)
||...|+++|.++|+++|+++|+|++++.+.. .+...... ..|++++| +||++++ +..|+++.+ +++. +.+.
T Consensus 140 ~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~-~~~~~~~s~s~~K~~~~-g~~g~~~~~~~~l~--~~~~ 214 (418)
T 2c81_A 140 FGSMANMDEINEIAQEHNLFVIEDCAQSHGSV-WNNQRAGT-IGDIGAFSCQQGKVLTA-GEGGIIVTKNPRLF--ELIQ 214 (418)
T ss_dssp TTCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCS-SSCEEEEESCHHHH--HHHH
T ss_pred cCCcccHHHHHHHHHHCCCEEEEECcccccCc-cCCEeccc-ccceEEEeccCCcccCC-CCeEEEEECCHHHH--HHHH
Confidence 99999999999999999999999999998763 22221110 12455555 4999986 456888885 4542 1222
Q ss_pred CcccCCceEEeeccccccccccccchhhhhc--CCChhH------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 323 PSTCGGGTVNYVNAFDEKDTLYLEDIEEREN--GGTPQI------VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~--~gt~~~------~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+...++.... .+. ......+. .+++.+ ...+.+++... ...+.+.+.++.+.+++++.+.
T Consensus 215 ~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~ 282 (418)
T 2c81_A 215 QLRADSRVYC---DDS-------SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDA 282 (418)
T ss_dssp HHHBTTEEEC---SCG-------GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccc---ccc-------cccccchhhccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222100 000 00000111 111111 01112222221 2234677788888889999999
Q ss_pred hCCCCcEEEeCCCCC--CCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee---eecCCCCCchhhHh
Q 043646 395 ILPNQNIQVLGNTSV--KRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ---ARGGCACAGPYGHT 468 (625)
Q Consensus 395 L~~l~gv~v~~~~~~--~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~---v~~G~~~~~~~~~~ 468 (625)
|.++|++++..+... ... .++.+.+... ...+++..++.+.|.+++||. ++.|+.|.... ..
T Consensus 283 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~-~~ 350 (418)
T 2c81_A 283 LSKIDGIKVMKRPPQVSRQTYYGYVFRFDPV-----------KFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKN-PL 350 (418)
T ss_dssp HTTSTTEEECCCCTTEEECCCSEEEEEECGG-----------GTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGC-TT
T ss_pred hccCCCcccCCCCCCCcccccEEEEEEEccc-----------cccccCHHHHHHHHHHcCCCCcccccccccccccC-ch
Confidence 999999998754321 112 2444444210 001245678999997755999 99887543100 00
Q ss_pred h--hcC-----------------ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCC-CHHHHHHHHHHHHHHHHh
Q 043646 469 L--LAF-----------------DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYM-SNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~--l~~-----------------~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~-t~edid~ll~aL~~~~~~ 522 (625)
+ ++. .-+....+ ..+++||+++.++ |++|+++++++|++++.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 351 FCPWTKNRYLKSVRKTEAYWRGLHYPVSERA-----------SGQSIVIHHAILLAEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp CCGGGCTTSCHHHHCCHHHHHTCCCHHHHHH-----------HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred hcccccccccccccccccccccCCChHHHHH-----------HhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 000 00011000 1378999999999 999999999999998765
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=241.34 Aligned_cols=339 Identities=14% Similarity=0.114 Sum_probs=226.7
Q ss_pred CcchHHHHHHHHHhhCC--CCCCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLP--FYGNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+.. ..++|+.. +..+.... ...+.+++++++++|.+++ .++++ +|+. ++..++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~y~~~~-~~~g~~~~~~~e~~ar~~la~~~g~~~~-~i~~~-sGt~-a~~~~~~~~--- 105 (407)
T 2dkj_A 33 NFVSKQVREAVGSVLTNKYAEGYPGAR-YYGGCEVIDRVESLAIERAKALFGAAWA-NVQPH-SGSQ-ANMAVYMAL--- 105 (407)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHHhhhhcCcccCCCccc-ccCCchHHHHHHHHHHHHHHHHhCCCcc-eEEec-chHH-HHHHHHHHh---
Confidence 34488999999887743 12233221 11122222 3334577899999998743 34454 7876 788887776
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhH---HHHHHcCC--eEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNL---LSWRQSLA--EVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~---~~~~~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++|++ |+++.++|+++. ..++..|+ .++.+++++ ++.+|+++|++++++ .++++|
T Consensus 106 ------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~~v 167 (407)
T 2dkj_A 106 ------------MEPGDT--LMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE----HRPKVI 167 (407)
T ss_dssp ------------CCTTCE--EEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh----cCCeEE
Confidence 467885 888888998873 33444566 444444443 578999999999984 278999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-cccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALY 316 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~ 316 (625)
++++++|+ .+.|+++|.++|++||+++|+|++|+.|....+.........|+++.|+||+++|+.+ |+++++ +++.
T Consensus 168 ~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~ 244 (407)
T 2dkj_A 168 VAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELG 244 (407)
T ss_dssp EECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHH
T ss_pred EEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHH
Confidence 99888886 7889999999999999999999999875543332211112479999999999988886 999998 5662
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
. .+.+.. ..+..++++..+. +.+++... ...+.+.+.++.+.+++++.+.
T Consensus 245 ~--~l~~~~------------------------~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 296 (407)
T 2dkj_A 245 K--RIDKLI------------------------FPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEE 296 (407)
T ss_dssp H--HHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHhhh------------------------cccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHH
Confidence 1 111110 0112344554333 23444443 2345678888999999999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|+++ +++++.+. ..+.++.+.+... +++..++.+.|. ++||.+++|..+...... .
T Consensus 297 L~~~-g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~---~--- 352 (407)
T 2dkj_A 297 LARR-GYRIVTGG--TDNHLFLVDLRPK--------------GLTGKEAEERLD-AVGITVNKNAIPFDPKPP---R--- 352 (407)
T ss_dssp HHHT-TCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHHH-HTTEECEECCCTTCSSCT---T---
T ss_pred HHhC-CceeecCC--CCceEEEEECccc--------------CCCHHHHHHHHH-HcCceecCCcCccccccc---c---
Confidence 9887 88887542 2345555544321 234667888884 589999987643100000 0
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~ 522 (625)
.++++|++++.+ ++++|+++++++|++++.+
T Consensus 353 -----------------~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 353 -----------------VTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -----------------TCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -----------------CCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 247899999754 7999999999999998766
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=232.03 Aligned_cols=345 Identities=13% Similarity=0.039 Sum_probs=232.4
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG---QADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~---~~~~vift~sGtta 151 (625)
+..+.|..+... +.|+.|.+++.+.+......+.. ....++.+++.+++++.+|.+ ++++|++| +|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t-~g~~~ 102 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEILPV-LGSRE 102 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEE-SSHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEc-CCcHH
Confidence 456777665443 35688999998877533333322 123566777778888888864 33279998 78999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCC---ceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC-CCCHHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEE---RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG-LLDIEALRSQLEL 227 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~-~ld~~~L~~~l~~ 227 (625)
++..++.++ +++|+ +..|+++.+.|+++...++..|++++.++++.++ .+|+++|+++++
T Consensus 103 al~~~~~~~---------------~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~- 166 (396)
T 3jtx_A 103 ALFSFVQTV---------------LNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW- 166 (396)
T ss_dssp HHHHHHHHH---------------CCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-
T ss_pred HHHHHHHHH---------------hCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc-
Confidence 899988877 46652 1248889999999988888899999999996544 689999999998
Q ss_pred hhhCCCCeEEEEecccCccccccCHHH---HHHHHHHcCCEEEEeccCcCCCc----cccCCC----CC-CCCCcEEEEc
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSDTRS---IARLLHQYGGFACFDFAASGPYV----KINLRS----RN-IDGYDAIFLA 295 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~l~~---I~~la~~~g~~vivD~A~~~g~~----~id~~~----~~-~~~~D~v~~S 295 (625)
+++++|++++++||||.+.|.++ |+++|++||+++|+|++++.... +..... +. ..+.++++.|
T Consensus 167 ----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 242 (396)
T 3jtx_A 167 ----KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTS 242 (396)
T ss_dssp ----HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEE
T ss_pred ----cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEec
Confidence 37999999999999999987655 99999999999999999875322 111100 00 0256788999
Q ss_pred CCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh
Q 043646 296 THKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY 374 (625)
Q Consensus 296 ~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~ 374 (625)
++|.++.|+ ++|+++.++++.. .+.. ......++++......+ .+.+ ...
T Consensus 243 ~sK~~~~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~-~~~l-~~~ 293 (396)
T 3jtx_A 243 LSKRSNVPGLRSGFVAGDAELLK--NFLL-------------------------YRTYHGSAMSIPVQRAS-IAAW-DDE 293 (396)
T ss_dssp STTTSSCGGGCCEEEEECHHHHH--HHHH-------------------------HHHHHTCCCCHHHHHHH-HHHH-HCC
T ss_pred cccccCCcccceEEEEeCHHHHH--HHHH-------------------------HHhhcccCCCHHHHHHH-HHHh-CCH
Confidence 999876553 4799988877621 1100 01111233333333222 2222 123
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCee
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQ 454 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~ 454 (625)
...+.++++.+.+++++.+.|.++ +.+..+ ..+.+.+...+. .+..++++.|.+++||.
T Consensus 294 ~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~----~~~~~~~~~~~~---------------~~~~~~~~~l~~~~gi~ 352 (396)
T 3jtx_A 294 QHVIDNRRLYQEKFERVIPILQQV--FDVKLP----DASFYIWLKVPD---------------GDDLAFARNLWQKAAIQ 352 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT--SCCCCC----SSSSEEEEECTT---------------SCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCccCC----CeeEEEEEECCC---------------CCHHHHHHHHHHHCCEE
Confidence 345677778888888999999875 223333 335555544432 23567888887778999
Q ss_pred eecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 455 ARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 455 v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+++|..|+..... ....++++||+++. +++++++++++|++++
T Consensus 353 v~~g~~~~~~~~~---------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 353 VLPGRFLARDTEQ---------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CEEGGGGCCCCTT---------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EeCChHhCCcccc---------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 9999887632000 00135899999975 8999999999998763
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=236.64 Aligned_cols=352 Identities=13% Similarity=0.080 Sum_probs=224.1
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCC-----CC-CCCcchhhHHHHHHHHHHHHHHHHHhC--------CCCCCc
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYG-----NT-HTSDSYVGQRMTKMVHEASNYIKRCLG--------GGQADA 141 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~-----n~-~~~~~~~~~~~~~~~~~~~~~ia~~~g--------~~~~~~ 141 (625)
+..+.|+.+.....++.+.+++.+....... .. ....|....+ ..++++.++++++ .+++ +
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~la~~~~~~~g~~~~~~~~-~ 110 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHG----LPEFRKAIAKFMEKTRGGRVRFDPE-R 110 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTC----CHHHHHHHHHHHHHHTTTCSCCCTT-S
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCC----cHHHHHHHHHHHHHhcCCCCCCChh-h
Confidence 4577888776666677888888754311000 00 0000100001 2345555555554 5455 7
Q ss_pred EEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCC--CCCCCH
Q 043646 142 IIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDD--NGLLDI 218 (625)
Q Consensus 142 vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~~~ld~ 218 (625)
|++| +|+++++..++.++ .++||+ |+++.+.|+++...+. ..|++++.++.+. +..+|+
T Consensus 111 i~~~-~G~~~ai~~~~~~~---------------~~~gd~--Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 172 (428)
T 1iay_A 111 VVMA-GGATGANETIIFCL---------------ADPGDA--FLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITS 172 (428)
T ss_dssp CEEE-EHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCH
T ss_pred EEEc-cChHHHHHHHHHHh---------------CCCCCe--EEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCH
Confidence 8998 89999999988877 468885 8899999998876554 5799999999874 346899
Q ss_pred HHHHHHHHHhh-hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCC---
Q 043646 219 EALRSQLELYK-AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNID--- 287 (625)
Q Consensus 219 ~~L~~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~--- 287 (625)
++|++++++.. ..+++++|++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+...
T Consensus 173 ~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 252 (428)
T 1iay_A 173 KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEM 252 (428)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGG
T ss_pred HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhcccccc
Confidence 99999997422 1237899999999999999999 89999999999999999999875221 1121111100
Q ss_pred ---CCc--EEEEcCCCCCCCCC-CceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 288 ---GYD--AIFLATHKFLGGPG-TPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 288 ---~~D--~v~~S~hK~lggp~-g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
++| +++.|+||+||.|+ .+|++++ ++++.. .+.. .. ...+.+..
T Consensus 253 ~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~--~~~~-------------------------~~--~~~~~~~~ 303 (428)
T 1iay_A 253 TYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVN--CARK-------------------------MS--SFGLVSTQ 303 (428)
T ss_dssp TTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHH--HHHH-------------------------HH--TTSCCCHH
T ss_pred ccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHH--HHHH-------------------------HH--hcccCCHH
Confidence 267 78899999997443 3699998 455421 1100 00 01122222
Q ss_pred HHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 361 QMIRAALAFWVKEY----IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 361 ~~~~aal~~~~~~~----~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
... ++..++ ... ...+.+.++...+++++.+.|.++ +++++.+ ..+++.+...+.... ...
T Consensus 304 ~~~-a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~~~~~--------~~~ 368 (428)
T 1iay_A 304 TQY-FLAAML-SDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKN----NAGLFCWMDLRPLLR--------EST 368 (428)
T ss_dssp HHH-HHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCC----SSSSEEEEECGGGCS--------SSS
T ss_pred HHH-HHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCC----CeeEEEEEechhhcC--------CCc
Confidence 211 112221 111 124567777888889999999877 6766543 234444443332100 000
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
.....++.+.|.+++||.+++|..|... .++++||+++ .++++++++++++|
T Consensus 369 ~~~~~~l~~~l~~~~gi~v~~~~~~~~~---------------------------~~~~iRis~~-~~~~e~i~~~~~~l 420 (428)
T 1iay_A 369 FDSEMSLWRVIINDVKLNVSPGSSFECQ---------------------------EPGWFRVCFA-NMDDGTVDIALARI 420 (428)
T ss_dssp HHHHHHHHHHHHHTSCEECEEGGGGTCS---------------------------SSSEEEEECS-SSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCEEEeCchhhCCC---------------------------CCCEEEEEEe-cCCHHHHHHHHHHH
Confidence 0123467888877679999987655311 1479999998 68999999999999
Q ss_pred HHHHHh
Q 043646 517 EFIAAY 522 (625)
Q Consensus 517 ~~~~~~ 522 (625)
++++++
T Consensus 421 ~~~l~~ 426 (428)
T 1iay_A 421 RRFVGV 426 (428)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=236.21 Aligned_cols=340 Identities=11% Similarity=0.016 Sum_probs=228.9
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
+..++|+.+... +.++.+.+++ +.+.... . .|.......++.+++.+++.+.+|. +++ +|++| +|++++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~t~a 114 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPEV----V-YYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVT-NGGSEA 114 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCSS----C-CCCCTTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEE-SHHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCHH-HEEEe-CCHHHH
Confidence 457788877665 4567899998 7774311 0 1111112234444455555444453 334 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhh
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~ 230 (625)
+..++.++ +++||+ |+++.+.|+++...++..|++++.++.++ +..+ +++|+++++
T Consensus 115 ~~~~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~---- 172 (409)
T 2gb3_A 115 ILFSFAVI---------------ANPGDE--ILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN---- 172 (409)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC----
T ss_pred HHHHHHHh---------------CCCCCE--EEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC----
Confidence 98888876 467885 99999999999888888999999999875 2334 788888776
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---ccc-CCCCCCCCCcEEEEcCCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KIN-LRSRNIDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id-~~~~~~~~~D~v~~S~hK~lggp 303 (625)
+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+.. ... +.. ..+.|+++.|+||++|.|
T Consensus 173 -~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 173 -ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTTTCG
T ss_pred -cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCcccc--CCCCEEEEecchhccCCc
Confidence 47899999999999999865 78999999999999999999886542 122 221 125699999999999744
Q ss_pred C-CceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHH
Q 043646 304 G-TPGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIK 381 (625)
Q Consensus 304 ~-g~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~ 381 (625)
+ .+|++++++ ++.. .+.+. ..... +++..... ++.+.+.....+.+.+.
T Consensus 250 G~r~G~~~~~~~~l~~--~l~~~------------------------~~~~~--~~~~~~~~-a~~~~l~~~~~~~~~~~ 300 (409)
T 2gb3_A 250 GARVGCLITRNEELIS--HAMKL------------------------AQGRL--APPLLEQI-GSVGLLNLDDSFFDFVR 300 (409)
T ss_dssp GGCCEEEECSCHHHHH--HHHHH------------------------HHHSC--CCCHHHHH-HHHHHHTCCHHHHHHHH
T ss_pred cceEEEEEECcHHHHH--HHHHH------------------------HhccC--CCCHHHHH-HHHHHHhccHHHHHHHH
Confidence 3 379999988 6621 11000 01111 22322221 11222200122355677
Q ss_pred HHHHHHHHHHHHhhCCCCcEEE-eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh-----cCeee
Q 043646 382 KQEDVYIESALGRILPNQNIQV-LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL-----FGIQA 455 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v-~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~-----~gI~v 455 (625)
++.+.+++++.+.|.++ ++++ ..+ ..+++.+...++ .+..++.+.|.++ +||.+
T Consensus 301 ~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~gi~v 360 (409)
T 2gb3_A 301 ETYRERVETVLKKLEEH-GLKRFTKP----SGAFYITAELPV---------------EDAEEFARWMLTDFNMDGETTMV 360 (409)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCBCCC----SBSSEEEEECSS---------------SCHHHHHHHHHHSCCBTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHc-CceeeeCC----CeeEEEEEEeCC---------------CCHHHHHHHHHhccccccCcEEE
Confidence 78888889999999877 7766 443 235555544331 2366788888765 59999
Q ss_pred ecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 456 RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 456 ~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++|..|.... +..++++||+++ ++++++++++++|++++.+.
T Consensus 361 ~~g~~f~~~~------------------------~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 361 APLRGFYLTP------------------------GLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp EEGGGGCSST------------------------TTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred eCchHhCCCC------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 9887654210 002589999998 79999999999999988664
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=235.69 Aligned_cols=338 Identities=13% Similarity=0.141 Sum_probs=225.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC-CCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG-GQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
+++.+.+++.+.+.... .....|.......++.+.+.+++++.+|. +++ +|++| +|+++++..++.++
T Consensus 92 p~~~v~~a~~~~l~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~v~~t-~G~~~al~~~~~~l------- 160 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYA--DKALQYGTTKGFTPLRETLMKWLGKRYGISQDN-DIMIT-SGSQQALDLIGRVF------- 160 (448)
T ss_dssp CHHHHHHHHHHHHHHSH--HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTS-EEEEE-SSHHHHHHHHHHHH-------
T ss_pred CHHHHHHHHHHHHHhhh--HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChh-hEEEe-CcHHHHHHHHHHHH-------
Confidence 56788888877664210 00001111112234444444444444498 444 89998 78999999998887
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCeEE-EEecccCc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPMLG-SFSACSNV 245 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~lv-~~~~~~n~ 245 (625)
+++||+ |++..+.|+++...++..|++++.+|.++++ +|+++|+++++... ...++++| ++++++||
T Consensus 161 --------~~~Gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NP 229 (448)
T 3aow_A 161 --------LNPGDI--VVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNP 229 (448)
T ss_dssp --------CCTTCE--EEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTT
T ss_pred --------cCCCCE--EEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCC
Confidence 478885 9999999999988888899999999988765 89999999997211 11378887 57899999
Q ss_pred cccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccc
Q 043646 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQ 317 (625)
Q Consensus 246 TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~ 317 (625)
||.+.+ +++|.++|++||+++|+|++++.... ...+..+...+.++++.|++|+|+ |+ .+|++++++++..
T Consensus 230 tG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~ 308 (448)
T 3aow_A 230 AGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIR 308 (448)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHH
Confidence 999987 46899999999999999999876432 122333222255788899999998 54 4899999987722
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHh
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE---YIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~---~~g~~~i~~~~~~l~~~l~~~ 394 (625)
.+.. .......+++.+.+. ++.+++ .. ....+.++++.+.+++++.+.
T Consensus 309 --~l~~------------------------~~~~~~~~~~~~~q~--a~~~~L-~~~~~~~~~~~~~~~~~~~~~~l~~~ 359 (448)
T 3aow_A 309 --KMEI------------------------AKQSTDLCTNVFGQV--VAWRYV-DGGYLEKHIPEIRKFYKPRRDAMLEA 359 (448)
T ss_dssp --HHHH------------------------HHHHHHSSCCHHHHH--HHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHH------------------------HHHHhcCCCCHHHHH--HHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 011112233333332 122222 11 112445666677778888888
Q ss_pred hCC-CC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 395 ILP-NQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 395 L~~-l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
|.+ +| ++++..+. .+.+.+...+. +++..++.+.|.++ ||.+++|..|...
T Consensus 360 L~~~~~~g~~~~~p~----~g~~~~v~~~~--------------~~~~~~l~~~l~~~-gV~v~pg~~f~~~-------- 412 (448)
T 3aow_A 360 LEEFMPEGVKWTKPE----GGMFIWVTLPD--------------GIDSKKMLERAIKK-GVAYVPGEAFYAH-------- 412 (448)
T ss_dssp HHHHCCTTCEECCCS----BSSEEEEECST--------------TCCHHHHHHHHHHT-TEECEEGGGGSTT--------
T ss_pred HHHhCCCCeEEeCCC----ccEEEEEEcCC--------------CCCHHHHHHHHHHC-CcEEEcchhhcCC--------
Confidence 876 57 68876553 34555544432 23467888888764 9999998766411
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+..++++||+++. .++++++.++++|++++.+.
T Consensus 413 -----------------~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 413 -----------------RDVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp -----------------CCCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 0025899999986 48999999999999987653
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=234.40 Aligned_cols=349 Identities=12% Similarity=0.058 Sum_probs=225.1
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
++.+.+++.+.+... +. .+. ......++++.+++++|.+ + .|+++ +| ++++..++.+++
T Consensus 16 ~~~~~~a~~~~l~~~--~~---~~~----~~~~~~~l~~~la~~~~~~-~-~i~~~-sG-t~al~~~l~~l~-------- 74 (388)
T 1b9h_A 16 DDAERNGLVRALEQG--QW---WRM----GGDEVNSFEREFAAHHGAA-H-ALAVT-NG-THALELALQVMG-------- 74 (388)
T ss_dssp CHHHHHHHHHHHHTS--CC---BTT----TCSHHHHHHHHHHHHTTCS-E-EEEES-CH-HHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHcC--Ce---eec----CCHHHHHHHHHHHHHhCCC-e-EEEeC-CH-HHHHHHHHHHcC--------
Confidence 478888888877431 10 111 1234677999999999986 2 56665 78 677888887763
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI 248 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~ 248 (625)
+++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+ ++|+||.
T Consensus 75 ------~~~gd~--Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~---~~n~tG~ 138 (388)
T 1b9h_A 75 ------VGPGTE--VIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT-----PRTKVIM---PVHMAGL 138 (388)
T ss_dssp ------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEEC---CBCGGGC
T ss_pred ------CCCcCE--EEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC-----cCceEEE---EeCCccC
Confidence 467875 99999999999999999999999999987 47899999999987 5788776 8899999
Q ss_pred ccCHHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccc-ccCCCCCcc
Q 043646 249 YSDTRSIARLLHQYGGFACFDFAASGPYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALY-QLGSSPPST 325 (625)
Q Consensus 249 ~~~l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~-~l~~~~p~~ 325 (625)
+.|+++|.++|++||+++|+|++++.|... .++..+ ..+++.++|.||+++++. .|+++.+++.. .+..+...
T Consensus 139 ~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~--~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~- 214 (388)
T 1b9h_A 139 MADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGEL--DSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLR- 214 (388)
T ss_dssp CCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGS--SSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccc--cceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHH-
Confidence 999999999999999999999999987654 334333 125566666789997665 59988887631 00111100
Q ss_pred cCCceEEeeccccccccccccchhhhhcCCC---hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE
Q 043646 326 CGGGTVNYVNAFDEKDTLYLEDIEERENGGT---PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402 (625)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~ 402 (625)
.+++. ......| .....|+ ++..+. +++.. ....++...++.+++++++.+.|.++|+++
T Consensus 215 ~~~~~-------~~~~~~~-----~~~~~g~~~~~~~~~~--a~~~~---~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 215 HSCGR-------PRDDRRY-----FHKIAGSNMRLNEFSA--SVLRA---QLARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp TBTTC-------CTTCSSC-----CCCSCCCBCBCBHHHH--HHHHH---HHTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred HhCCC-------CccCccc-----eeecccccCCcCHHHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 11111 0000000 0011233 232222 11111 112345566777778999999999988998
Q ss_pred EeCCCCC--CC-cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh--hcCCh---
Q 043646 403 VLGNTSV--KR-QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL--LAFDQ--- 474 (625)
Q Consensus 403 v~~~~~~--~~-~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~--l~~~~--- 474 (625)
+..+... .. ..++.+.+ ++. .+.+..++.+.|.+ +||.++.+..... ....+ ++...
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~l~~~L~~-~gI~v~~~~~~~~-~~~~~~~~~~~~~~~ 342 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRI-PGL------------TEERRNALVDRLVE-AGLPAFAAFRAIY-RTDAFWELGAPDESV 342 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEEC-TTC------------CHHHHHHHHHHHHH-TTCCEEECCCCGG-GSHHHHHSSCCSSCH
T ss_pred ccCCCcCCCccceEEEEEEe-CCc------------CcccHHHHHHHHHH-CCCCcccccCccc-cChHhHhcCCCcccc
Confidence 8764321 12 23444443 321 00124578888865 7999988654221 00000 01100
Q ss_pred -------hhHHHHHHHHHhCCCCCCCcEEEEecCCCC-CHHHHHHHHHHHHHHHHh
Q 043646 475 -------TRSLEIRSAIQKGYLGVKPGWTRITFPYYM-SNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 -------~~~~~~~~~~~~g~~g~~~g~iRis~~~~~-t~edid~ll~aL~~~~~~ 522 (625)
+...++ ..+.+||+++..+ |++||++++++|++++.+
T Consensus 343 ~~~~~~~~~~~~~-----------~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 343 DAIARRCPNTDAI-----------SSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHTCHHHHHH-----------HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHH-----------HhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 011110 1368999999999 999999999999988754
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=238.26 Aligned_cols=341 Identities=14% Similarity=0.120 Sum_probs=222.4
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG---GGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g---~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
+++.+.+++.+.+.... .....|.......++.+++.+++++.+| ++++ +|++| +|+++++..++.++
T Consensus 59 ~~~~v~~a~~~~~~~~~--~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~-~v~~t-~G~~~al~~~~~~l----- 129 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEY--HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDED-NLIFT-VGSQQALDLIGKLF----- 129 (425)
T ss_dssp CHHHHHHHHHHHHHHSH--HHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGG-GEEEE-EHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhhcc--hhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcc-cEEEe-ccHHHHHHHHHHHh-----
Confidence 56788888887764210 0000111111223444445555544448 4444 89998 89999999988877
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh---CCCCeEE-EEec
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA---AKRPMLG-SFSA 241 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~---~~~~~lv-~~~~ 241 (625)
+++||+ |++..+.|+++...++..|++++.+|.++++ +|+++|++++++... ..++++| ++++
T Consensus 130 ----------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~ 196 (425)
T 1vp4_A 130 ----------LDDESY--CVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSN 196 (425)
T ss_dssp ----------CCTTCE--EEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECS
T ss_pred ----------CCCCCE--EEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCC
Confidence 467885 8889999999988888899999999987765 899999999974110 1268887 5899
Q ss_pred ccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 242 CSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 242 ~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
++||||.+.| +++|+++|++||+++|+|++++.... ..++..+...+.++++.|++|+++ |+ .+|++++++
T Consensus 197 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~ 275 (425)
T 1vp4_A 197 FHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSK 275 (425)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCH
Confidence 9999999987 56889999999999999999876432 122222211245788899999998 54 379999987
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE--YIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~--~~g~~~i~~~~~~l~~~l 391 (625)
++. +.+.+. ......+++.+.+. ++.+++... ....+.+.++.+++++++
T Consensus 276 ~~~--~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l~~~~~~~~~~~~~~~~~~~~~~l 327 (425)
T 1vp4_A 276 EFI--RKIVQA------------------------KQSADLCSPAITHR--LAARYLERYDLLEQLKPTIELYRRKRTVM 327 (425)
T ss_dssp HHH--HHHHHH------------------------HHHHHSSCCHHHHH--HHHHHHHHSCHHHHTHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHH------------------------hhhhcCCCCHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 762 111100 11111223222222 222222110 112345666777778888
Q ss_pred HHhhCC-CC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 392 LGRILP-NQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 392 ~~~L~~-l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
.+.|.+ +| ++++..+. .+.+.+...+. +++..++.+.|.++ ||.+++|..|...
T Consensus 328 ~~~L~~~~~~~~g~~~~~~~----~g~~~~~~~~~--------------~~~~~~l~~~l~~~-gi~v~~g~~f~~~--- 385 (425)
T 1vp4_A 328 LNALEEYFSDIPGVKWVKSE----GGLFIWLTLPE--------------GFDTWEMFEYAKRK-KVFYVPGRVFKVY--- 385 (425)
T ss_dssp HHHHHHHSTTSTTCEECCCS----BSSEEEEECCT--------------TCCTTTTHHHHHHH-TEECEEGGGGCTT---
T ss_pred HHHHHHhCCCCCceEEecCC----ccEEEEEEcCC--------------CCCHHHHHHHHHHC-CCEEECchhhcCC---
Confidence 888876 35 68876553 34444443332 12344678888664 9999988766411
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+..++++||+++.. +++|+++++++|++++.+..+
T Consensus 386 ----------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 386 ----------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEYGK 420 (425)
T ss_dssp ----------------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 00248999999874 899999999999998876544
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=230.08 Aligned_cols=359 Identities=12% Similarity=0.033 Sum_probs=228.3
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
...++.+.+++.+.+...+ +.. .....++++.+++++|.+ +++++++|++ ++..++.++....
T Consensus 11 ~~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~i~~~sGt~-a~~~al~~~~~~~-- 73 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSKM-------FTM----GEYVKQYETQFAKTFGSK---YAVMVSSGST-ANLLMIAALFFTK-- 73 (390)
T ss_dssp CCCCHHHHHHHHHHHHHTC-------CSS----CHHHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHHHHHTTSSS--
T ss_pred CCCCHHHHHHHHHHHHcCC-------CCC----ChHHHHHHHHHHHHHCCC---cEEEECCHHH-HHHHHHHHHHhhh--
Confidence 4467788888888774311 111 235678999999999986 4677767875 6777766651000
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
...+++|++ |+++..+|+++..+++..|++++.++++++ +.+|+++|+++++ +++++|++++ +
T Consensus 74 ------~~~~~~g~~--Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~ 137 (390)
T 3b8x_A 74 ------KPRLKKGDE--IIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVT-----DSTKAILTVN---L 137 (390)
T ss_dssp ------SCSCCTTCE--EEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC-----TTEEEEEEEC---G
T ss_pred ------hcCCCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhC-----cCCeEEEEEC---C
Confidence 001467775 999999999999999999999999999875 8899999999987 5789988874 6
Q ss_pred cccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcC--CCCCCCCCCceEEEEec-cccccCCCC
Q 043646 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLAT--HKFLGGPGTPGILLISK-ALYQLGSSP 322 (625)
Q Consensus 246 TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~--hK~lggp~g~G~l~v~~-~~~~l~~~~ 322 (625)
+|...|+++|.++|+++|+++|+|+||+.|... +.+..+. ..|+.++|. .|.++++.| |++++++ .+. +.+.
T Consensus 138 ~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~--~~~~ 212 (390)
T 3b8x_A 138 LGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNKCAGT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIY--HILL 212 (390)
T ss_dssp GGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTEETTS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHH--HHHH
T ss_pred ccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCccccc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHH--HHHH
Confidence 798999999999999999999999999988765 4444311 236666542 344554555 8888886 442 1122
Q ss_pred CcccCC--ce---EEeec--cccccccccccchhhhhcCCChhHHHHHHHH-HHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 323 PSTCGG--GT---VNYVN--AFDEKDTLYLEDIEERENGGTPQIVQMIRAA-LAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 323 p~~~gg--g~---v~~~~--~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aa-l~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
+...+| +. ...+. .........+......+..+++++.+.+..+ ++ .++.+.++.+++++++.+.
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~-------~l~~~~~~~~~~~~~l~~~ 285 (390)
T 3b8x_A 213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLK-------KLPRFISVRRKNAEYFLDK 285 (390)
T ss_dssp HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 222222 10 00000 0000000000000112233466665544322 22 2456778888899999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec---CCCCCc-hhhHh--
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG---GCACAG-PYGHT-- 468 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~---G~~~~~-~~~~~-- 468 (625)
|.++|++++..+. .+.+.+.|.+.-.. ..+++..++.+.|.+ +||.++. |+.|.. |....
T Consensus 286 L~~~~~~~~~~~~--~~~~~~~~~i~~~~-----------~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~ 351 (390)
T 3b8x_A 286 FKDHPYLDVQQET--GESSWFGFSFIIKK-----------DSGVIRKQLVENLNS-AGIECRPIVTGNFLKNTDVLKYFD 351 (390)
T ss_dssp HTTCSSEEECCCC--SBCCCCEEEEEECT-----------TSCCCHHHHHHHHHH-TTBCCBCSTTSSGGGCHHHHTTCE
T ss_pred hcCCCCcccCCCC--CCcccEEEEEEecC-----------cCcccHHHHHHHHHH-CCCCeeeecCCchhhcchhhhcCC
Confidence 9999999887642 23344334332110 012457789999955 7999997 666766 54321
Q ss_pred ---hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 469 ---LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 469 ---~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
+..++..... ..+.+||+++.++|++|+++++++|+
T Consensus 352 ~~~~~~~~~~~~~-------------~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 352 YTVHNNVDNAEYL-------------DKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp EEESSCCHHHHHH-------------HHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred CCCcCCChHHHHH-------------hcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 1112111111 13789999999999999999999863
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-25 Score=235.71 Aligned_cols=342 Identities=14% Similarity=0.133 Sum_probs=217.6
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
.+.++.|.+++.+.+...+ ++++...+........+.+.+++++++++|++++ +|+++ +| ++++..++.++
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~-sG-t~a~~~~~~~~---- 107 (417)
T 3n0l_A 35 NFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPN-SG-SQANQGVYAAL---- 107 (417)
T ss_dssp CCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SH-HHHHHHHHHHH----
T ss_pred CCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-ceEec-cH-HHHHHHHHHHh----
Confidence 3457899999988774433 3333221212233455666788999999999655 57675 78 57788777776
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHH---HHH--cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS---WRQ--SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---~~~--~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
+++||+ |+++.++|+++... ... .+..++.++++.++.+|+++|++++++ +++++|++
T Consensus 108 -----------~~~gd~--vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~ 170 (417)
T 3n0l_A 108 -----------INPGDK--ILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK----EKPKLIVC 170 (417)
T ss_dssp -----------SCTTCE--EEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH----HCCSEEEE
T ss_pred -----------cCCCCE--EEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh----cCCeEEEE
Confidence 578886 88999999876542 222 345667777776778999999999984 37899988
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe-cccccc
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS-KALYQL 318 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~-~~~~~l 318 (625)
++++| |.+.|+++|.++|++||+++|+|++|+.+....+.........|++++|+||+|+||.| |+++++ +++..
T Consensus 171 ~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~- 246 (417)
T 3n0l_A 171 GASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELAK- 246 (417)
T ss_dssp CCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSC-EEEEESCHHHHH-
T ss_pred CCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCe-eEEEECCHHHHH-
Confidence 87764 99999999999999999999999998765442222111112569999999999988875 999988 45521
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
.+.+... ....++++...+...+.++......+.+.+.++...+++++.+.|.+
T Consensus 247 -~~~~~~~------------------------~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 300 (417)
T 3n0l_A 247 -KINSAIF------------------------PGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD- 300 (417)
T ss_dssp -HHHHHHT------------------------TTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -HHhhhhC------------------------CcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 1111100 01123444444333222222111234567788888889999999987
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~ 478 (625)
.++++.... ....++.+.+.+ .+++..++.+.|. ++||.++.+..+..+...
T Consensus 301 ~g~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~----------- 352 (417)
T 3n0l_A 301 RKFKLVSDG--TDNHLVLMSFLD--------------REFSGKDADLALG-NAGITANKNTVPGEIRSP----------- 352 (417)
T ss_dssp TTCEEGGGS--CSSSEEEEECTT--------------SSSCHHHHHHHHH-HTTEECEECCCTTCCSCT-----------
T ss_pred CCceeccCC--CCceEEEEEccc--------------CCCCHHHHHHHHH-HcCeEEeccccCCCCccc-----------
Confidence 578876521 122333332221 1345677888774 589999865433211000
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPY----YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~----~~t~edid~ll~aL~~~~~~ 522 (625)
..+..+|++++. ..+++|+++++++|++++.+
T Consensus 353 ------------~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 353 ------------FITSGLRLGTPALTARGFKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp ------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 023679999753 35799999999999998865
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=235.92 Aligned_cols=362 Identities=9% Similarity=-0.045 Sum_probs=236.0
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA--DAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~--~~vift~sGttaal 153 (625)
..+.|..+... ++|+.+.+++.+.+.... ....|.......++.+.+.+++.+.+|.+.+ ++|++| +|+++++
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~-~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDF---MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVT-VGGYGAL 104 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEE-SHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCC---ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEE-CChHHHH
Confidence 35555554433 467889999988775311 0001111122345666677777777775432 379998 7899989
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC----C--------CCCCHHHH
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD----N--------GLLDIEAL 221 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~----~--------~~ld~~~L 221 (625)
..++.++ +++||+ |++..+.|+++...++..|++++.++++. + +.+|+++|
T Consensus 105 ~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l 167 (422)
T 3fvs_A 105 FTAFQAL---------------VDEGDE--VIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMEL 167 (422)
T ss_dssp HHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHH
T ss_pred HHHHHHH---------------cCCCCE--EEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHH
Confidence 9888876 478885 88888999998888888999999999875 3 36899999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCC----CccccCCCCCC-CCCcEEE
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGP----YVKINLRSRNI-DGYDAIF 293 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g----~~~id~~~~~~-~~~D~v~ 293 (625)
+++++ +++++|++++++||||.+. ++++|+++|++||+++|+|++++.. ..+.++..+.. .+.++++
T Consensus 168 ~~~~~-----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (422)
T 3fvs_A 168 AGKFT-----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI 242 (422)
T ss_dssp HTTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred HhhcC-----CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence 99887 5799999999999999998 5899999999999999999998752 22233333211 1345888
Q ss_pred EcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHH
Q 043646 294 LATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFW 370 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~ 370 (625)
.|++|++|.|+ ++|++++++++.. .+.. .......+.+..... .+++...
T Consensus 243 ~S~sK~~g~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~ 295 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLGPDHIMK--HLRT-------------------------VHQNSVFHCPTQSQAAVAESFERE 295 (422)
T ss_dssp EEHHHHHTCGGGCCEEEECCHHHHH--HHHH-------------------------HHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEeCHHHHH--HHHH-------------------------HHhhccCCCCcHHHHHHHHHHhhc
Confidence 89999997443 4899998887622 1100 000111222222221 2222210
Q ss_pred HH----hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccc-cCCCCCChHHHHH
Q 043646 371 VK----EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI-ERNKPLHGPFVAT 445 (625)
Q Consensus 371 ~~----~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~-~~~~~l~~~~v~~ 445 (625)
.. .....+.+.++.+.+++++.+.|.++ +++++.+. .+.+.+...+...... ... .........++++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 368 (422)
T 3fvs_A 296 QLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQ----GSYFLITDISDFKRKM--PDLPGAVDEPYDRRFVK 368 (422)
T ss_dssp HHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCS----BSSEEEEECHHHHHHC--CCCCCCTTCCHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC----eeeEEEEechhhcccc--cccccccccccHHHHHH
Confidence 00 12235678888888999999999987 88877653 3444444332100000 000 0000000346777
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|.+++||.+.+|..|..+.... ...+++|||++. ++++++.++++|++++++
T Consensus 369 ~ll~~~gv~v~~g~~f~~~~~~~----------------------~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 369 WMIKNKGLVAIPVSIFYSVPHQK----------------------HFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHCEECEEGGGGSCHHHHT----------------------TSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCEEEeCcHHhcCCcCCC----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 76677899999998886431110 025899999975 999999999999988754
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=231.02 Aligned_cols=350 Identities=15% Similarity=0.065 Sum_probs=226.2
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.|+.+.+++.+.+...... . .....++++.+++++|.+ +++++ +|+++++..++.+++
T Consensus 18 ~~~~~~~a~~~~~~~~~~~-------~----~~~~~~l~~~la~~~~~~---~~~~~-~~gt~al~~~~~~~~------- 75 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWIT-------T----GPKNQELEAAFCRLTGNQ---YAVAV-SSATAGMHIALMALG------- 75 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCS-------S----SHHHHHHHHHHHHHHCCS---EEEEE-SCHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHhcCCcC-------C----ChHHHHHHHHHHHHhCCC---cEEEe-cChHHHHHHHHHHcC-------
Confidence 4567788887777432110 1 134677999999999974 68888 566777888888763
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG 247 (625)
+++||+ |+++.++|+++...++..|++++.++++++ +.+|+++|+++++ +++++|+++ |+||
T Consensus 76 -------~~~gd~--Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~---~~~G 138 (393)
T 1mdo_A 76 -------IGEGDE--VITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT-----PQTKAIIPV---HYAG 138 (393)
T ss_dssp -------CCTTCE--EEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECCB---CGGG
T ss_pred -------CCCCCE--EEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC-----CCceEEEEe---CCCC
Confidence 467885 999999999999899999999999999874 6899999999987 478888775 4899
Q ss_pred cccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCC-CcEEEEcCC--CCCCCCCCceEEEEe-ccccccCCCCC
Q 043646 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDG-YDAIFLATH--KFLGGPGTPGILLIS-KALYQLGSSPP 323 (625)
Q Consensus 248 ~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~-~D~v~~S~h--K~lggp~g~G~l~v~-~~~~~l~~~~p 323 (625)
.+.|+++|.++|+++|+++|+|++++.|... +.+.+ + .|++++|+| |+++++. .|+++.+ +++. +.+.+
T Consensus 139 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~---~~~d~~~~S~~k~K~l~~~~-~g~~~~~~~~~~--~~l~~ 211 (393)
T 1mdo_A 139 APADLDAIYALGERYGIPVIEDAAHATGTSY-KGRHI---GARGTAIFSFHAIKNITCAE-GGIVVTDNPQFA--DKLRS 211 (393)
T ss_dssp CCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEET---TSSSEEEEECCTTSSSCSSS-CEEEEESCHHHH--HHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEECccccCCeE-CCeec---CCCCeEEEeCCCCCcccccc-ceEEEeCCHHHH--HHHHH
Confidence 9999999999999999999999999977543 22333 4 799999999 9997644 5888886 4552 22222
Q ss_pred cccCCceEEeeccccccccccccchhhhh---cCCC----hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEERE---NGGT----PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~~~---~~gt----~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
...++.... .+.. +.......+ ..|+ +++.+.+ ++.. ..+++.+.++.+++++++.+.|.
T Consensus 212 ~~~~~~~~~---~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~a~--~~~~----l~~~~~~~~~~~~~~~~l~~~L~ 278 (393)
T 1mdo_A 212 LKFHGLGVD---AWDR----QSGGRAPQAEVLAPGYKYNLPDLNAAI--ALAQ----LQKLDALNARRAAIAAQYHQAMA 278 (393)
T ss_dssp HTBTTEECC------------------CCEESSCCCBCCCCHHHHHH--HHHH----HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccc---chhh----hcccccccccccccCccCCCCHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222110 0000 000001111 1232 2222211 1111 12356777778889999999999
Q ss_pred CCCcEEEeCCCC--C-CCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC--chhhHhhhc
Q 043646 397 PNQNIQVLGNTS--V-KRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA--GPYGHTLLA 471 (625)
Q Consensus 397 ~l~gv~v~~~~~--~-~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~--~~~~~~~l~ 471 (625)
+++ +++..... . ....++.+.+... ..+.+..++.+.|.+ +||.+++|..|. .++...-..
T Consensus 279 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~------------~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 279 DLP-FQPLSLPSWEHIHAWHLFIIRVDEA------------RCGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp TSS-CEECCCCSSCEECCCSCEEEECCHH------------HHSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHST
T ss_pred cCC-cccccCCCCCCCceeEEEEEEeccc------------ccccCHHHHHHHHHh-CCCCcccccCccccChhhhccCC
Confidence 886 77764321 1 1122344444210 001246788888865 799999988773 111110000
Q ss_pred -CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 472 -FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 472 -~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
-..+...++ ..+++||+++.++|++|+++++++|++++..
T Consensus 345 ~~~~~~~~~~-----------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 345 TLTLPDTEWN-----------SERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp TCCCHHHHHH-----------HTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred ccCChhHHHH-----------HhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 000000000 1368999999999999999999999988755
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=235.80 Aligned_cols=357 Identities=9% Similarity=-0.022 Sum_probs=230.9
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaa 152 (625)
...++|+++... ++|+.|.+++.+.+... ....|.......++.+.+.+++.+.+|. +++++|++| +|++++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~-~g~~~a 97 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFID----NMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVA-VGAYGS 97 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCG----GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCc----cccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEe-CCcHHH
Confidence 457888887765 46789999998887531 0001111111244555555566555554 342489998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-----------CCCCCHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-----------NGLLDIEAL 221 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-----------~~~ld~~~L 221 (625)
+..++.++ +++||+ |++..+.|+++...++..|++++.++++. ++.+|+++|
T Consensus 98 ~~~~~~~~---------------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l 160 (410)
T 3e2y_A 98 LFNSIQGL---------------VDPGDE--VIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPREL 160 (410)
T ss_dssp HHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHH
T ss_pred HHHHHHHh---------------cCCCCE--EEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHH
Confidence 99888877 478885 88888999999888888999999998862 346899999
Q ss_pred HHHHHHhhhCCCCeEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC-CCCCcEEE
Q 043646 222 RSQLELYKAAKRPMLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN-IDGYDAIF 293 (625)
Q Consensus 222 ~~~l~~~~~~~~~~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~-~~~~D~v~ 293 (625)
+++++ +++++|++++++||||.+. ++++|+++|++||+++|+|++++... ...++..+. ..+.++++
T Consensus 161 ~~~~~-----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (410)
T 3e2y_A 161 ESKFS-----SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235 (410)
T ss_dssp HTTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred HhhcC-----CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence 99886 5799999999999999994 68899999999999999999987422 222232221 11345788
Q ss_pred EcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHH
Q 043646 294 LATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFW 370 (625)
Q Consensus 294 ~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~ 370 (625)
.|++|++|.| .++|++++++++.. .+.. .......+++..... .+++.-.
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~ 288 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIK--HLQT-------------------------VQQNSFYTCATPLQAALAEAFWID 288 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHH--HHHH-------------------------HHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHH--HHHH-------------------------HHHhhccCCChHHHHHHHHHHHhh
Confidence 8999999734 34899998887632 1100 001111222222221 2222210
Q ss_pred H----HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 371 V----KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 371 ~----~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
. ......+.+.++.+.+++++.+.|.++ ++++..+. .+.+.+.......... ........+..++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 360 (410)
T 3e2y_A 289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPD----GGYFIIADVSSLGADL---SDMNSDEPYDYKFVKW 360 (410)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCS----BSSEEEEECGGGCCCC---TTCCSSCCHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC----ccEEEEEEchhhhccc---ccccccccCHHHHHHH
Confidence 0 012235677888888899999999887 88877653 3445444333210000 0000000112367776
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
|.+++||.+.+|..|..+..... ..+++|||++. +++++++++++|++
T Consensus 361 ll~~~gv~v~~g~~f~~~~~~~~----------------------~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 361 MTKHKKLTAIPVSAFCDSKSKPH----------------------FEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHSEECEEGGGGSCTTTHHH----------------------HTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred HHHHcCEEEeCchhhCCCCCCCC----------------------CCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 66778999999988753210000 14899999875 99999999999874
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=227.32 Aligned_cols=286 Identities=15% Similarity=0.042 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHc
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
..++++.+++++|++++ +|++| +|+++++..++.++ +++| |+ |+++.++|+++...++..
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~-~G~~~ai~~~~~~~---------------~~~g~d~--Vl~~~p~~~~~~~~~~~~ 120 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVS-RGADEGIELLIRAF---------------CEPGKDA--ILYCPPTYGMYSVSAETI 120 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTTCE--EEECSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChH-HEEEc-CCHHHHHHHHHHHH---------------hCCCCCE--EEEeCCChHHHHHHHHHc
Confidence 35689999999998766 89998 89999999998887 4678 75 999999999998888889
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccc
Q 043646 202 LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKI 279 (625)
Q Consensus 202 G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~i 279 (625)
|++++.++.+.++.+|+++|+++++ ++++|++++++||||.+.|.++|.++++. +|+++++|++++......
T Consensus 121 g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~ 194 (356)
T 1fg7_A 121 GVECRTVPTLDNWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQA 194 (356)
T ss_dssp TCEEEECCCCTTSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGG
T ss_pred CCEEEEeeCCCCCCCCHHHHHHHhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccchhhcCCC
Confidence 9999999988777899999987764 58999999999999999886655544443 899999999987543222
Q ss_pred cCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 280 NLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 280 d~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
++..+ ...+.++++.|++|++|.|+ .+|++++++++.. .+.+.. ...+.
T Consensus 195 ~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~--~l~~~~---------------------------~~~~~ 245 (356)
T 1fg7_A 195 SLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN--LLMKVI---------------------------APYPL 245 (356)
T ss_dssp CSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH--HHHHHS---------------------------CSSCS
T ss_pred cHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHH--HHHHhc---------------------------CCCCC
Confidence 22111 11245788899999997443 3799999887622 111000 00122
Q ss_pred hHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 358 QIVQMIRAALAFWVKEYIG---YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g---~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
+.... .++.+.+ +..+ .+.+.++.+.+++++.+.|.+++++....+. .+.++ +...+
T Consensus 246 ~~~~~-~a~~~~l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~-~~~~~------------- 305 (356)
T 1fg7_A 246 STPVA-DIAAQAL--SPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS---ETNYI-LARFK------------- 305 (356)
T ss_dssp CHHHH-HHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC---SSSEE-EEEET-------------
T ss_pred CHHHH-HHHHHHh--cCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC---CCeEE-EEECC-------------
Confidence 32222 1222222 1222 5567777888899999999888765333332 23333 33322
Q ss_pred CCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
+..++.+.| .++||.+++ |..|+ .++++|||++ +++|+++++
T Consensus 306 ----~~~~l~~~L-~~~gI~v~~~g~~~~-----------------------------~~~~iRis~~---~~~e~~~~~ 348 (356)
T 1fg7_A 306 ----ASSAVFKSL-WDQGIILRDQNKQPS-----------------------------LSGCLRITVG---TREESQRVI 348 (356)
T ss_dssp ----THHHHHHHH-HHTTEECEECTTSTT-----------------------------CTTEEEEECC---CHHHHHHHH
T ss_pred ----CHHHHHHHH-HHCCEEEEECCCCCC-----------------------------CCCeEEEEeC---CHHHHHHHH
Confidence 255788888 458999998 77664 1378999997 789999999
Q ss_pred HHHHHH
Q 043646 514 AALEFI 519 (625)
Q Consensus 514 ~aL~~~ 519 (625)
++|+++
T Consensus 349 ~~l~~~ 354 (356)
T 1fg7_A 349 DALRAE 354 (356)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 999753
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-24 Score=229.62 Aligned_cols=310 Identities=15% Similarity=0.118 Sum_probs=210.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++++++++|.+ + .++|+ +|+ +++..++.++ +++||+ |+++...|++.
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~-~-~v~~~-sG~-~Ai~~al~~l---------------~~~Gd~--Vi~~~~~y~~~ 166 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE-S-TLLMA-SGM-CASTVMLLAL---------------VPAGGH--IVTTTDCYRKT 166 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS-E-EEEES-CHH-HHHHHHHHHH---------------SCSSCE--EEEETTSCHHH
T ss_pred ccCCCChHHHHHHHHHHHHhCCC-c-EEEeC-CHH-HHHHHHHHHH---------------hCCCCE--EEEcCCCchhH
Confidence 44444567888999999999985 3 56665 888 7788887766 478885 88888999887
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC-eEEEEecccCccccccCHHHHHHHHHHcCCEEEEe
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP-MLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~-~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD 269 (625)
...+ +..|++++.++.+ |+++|+++|+ +++ ++|++++++||||.+.|+++|+++||++|+++|+|
T Consensus 167 ~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~-----~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD 236 (445)
T 1qgn_A 167 RIFIETILPKMGITATVIDPA-----DVGALELALN-----QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID 236 (445)
T ss_dssp HHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHH-----HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhc-----cCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 6543 3469999999875 8999999998 468 99999999999999999999999999999999999
Q ss_pred ccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC--CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 270 FAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG--TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 270 ~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
++++.++....+ .+ ++|+++.|+||++|+++ ..|++++++++. ..+.+
T Consensus 237 ~a~~~~~~~~~~-~~---g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~--~~l~~------------------------ 286 (445)
T 1qgn_A 237 GTFATPLNQKAL-AL---GADLVLHSATKFLGGHNDVLAGCISGPLKLV--SEIRN------------------------ 286 (445)
T ss_dssp CTTTCTTTCCTT-TT---TCSEEEECTTTTTTCSSSCCCEEEEECHHHH--HHHHH------------------------
T ss_pred CCCcccccCCcc-cc---CCEEEEECCcccccccccceEEEEEECHHHH--HHHHH------------------------
Confidence 999877643222 23 78999999999998554 279999988762 11110
Q ss_pred hhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------------CCC
Q 043646 348 IEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------------VKR 411 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------------~~~ 411 (625)
..+...++++.... +..+++. .....++....++++.+.|.+.|++ +++.|.- ...
T Consensus 287 -~~~~~g~~~~~~~a~~~~~~l~~-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~ 358 (445)
T 1qgn_A 287 -LHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGF 358 (445)
T ss_dssp -HHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCC
T ss_pred -HHHHhCCCCCHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCC
Confidence 00111222332221 1112211 2222334444588888999888888 5665521 125
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
+++++|.+.... -....+.+.| +.++|.++.|..|+. |....+..+..+... .
T Consensus 359 g~ivsf~l~~~~--------------~~~~~~l~~l-~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~ 414 (445)
T 1qgn_A 359 GGAVSFEVDGDL--------------LTTAKFVDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRA---------K 414 (445)
T ss_dssp CSEEEEEESSCH--------------HHHHHHHHHC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHH---------T
T ss_pred CcEEEEEECCCH--------------HHHHHHHHhC-CCceEeccCCCCceeeecccccccccCCHHHHH---------h
Confidence 788888874310 0123455555 346899999999863 211111111111000 1
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.|+.++.||||++ .||++.+++.|+++++
T Consensus 415 ~g~~~~~iRlSvG----~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 415 YGIMDNLVRFSFG----VEDFDDLKADILQALD 443 (445)
T ss_dssp TTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence 2445689999998 3789999999998875
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=228.93 Aligned_cols=297 Identities=13% Similarity=0.041 Sum_probs=211.6
Q ss_pred HHHHHHHHHHhC-CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 124 HEASNYIKRCLG-GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 124 ~~~~~~ia~~~g-~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.++++.++++++ .+++ ++++| +|+++++..++.++ +++||+ |+++.+.|++....++..|
T Consensus 66 ~~l~~~la~~~~~~~~~-~v~~~-~g~~~a~~~~~~~l---------------~~~gd~--Vl~~~~~~~~~~~~~~~~g 126 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPE-QILQT-NGATGANLLVLYSL---------------IEPGDH--VISLYPTYQQLYDIPKSLG 126 (375)
T ss_dssp HHHHHHHHTTSSSCCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEEESSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCChh-hEEEc-CChHHHHHHHHHHh---------------cCCCCE--EEEeCCCchhHHHHHHHcC
Confidence 458888999884 5555 89998 78888898888877 578885 9999999999888888899
Q ss_pred CeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc
Q 043646 203 AEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV 277 (625)
Q Consensus 203 ~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~ 277 (625)
++++.++++. ++.+|+++|+++++ +++++|++++++||||.+.| +++|.++|++||+++|+|++++....
T Consensus 127 ~~~~~v~~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 127 AEVDLWQIEEENGWLPDLEKLRQLIR-----PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp CEEEEEEEEGGGTTEECHHHHHHHCC-----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred CEEEEEeccccCCCCCCHHHHHHhhc-----cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 9999999874 34589999999997 58999999999999999999 99999999999999999999875433
Q ss_pred cccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 278 KINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 278 ~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
. ..... ...+.++++.|++|+++.|+ .+|++++++++.. .+.... .....+
T Consensus 202 ~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~--~~~~~~------------------------~~~~~~ 254 (375)
T 3op7_A 202 L-DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTD--ILRDYR------------------------DYTMIC 254 (375)
T ss_dssp S-CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHH--HHTTTG------------------------GGTTSC
T ss_pred c-CCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHH--HHHHHH------------------------hhhccC
Confidence 2 11110 11245688889999997443 3699998777632 221111 001112
Q ss_pred ChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 356 TPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 356 t~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
++.+...+ .+++... ....+.++++.+.+++++.+.|.+.+++.+..+. .+.+.|...+.
T Consensus 255 ~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~------------ 315 (375)
T 3op7_A 255 AGVFDDLVAQLALAHY---QEILERNRHILEENLAILDQWIEEEPLVSYIRPA----VVSTSFVKIAV------------ 315 (375)
T ss_dssp CCHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS----SSSCEEEEECC------------
T ss_pred CCcHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----CeEEEeEEcCC------------
Confidence 22222221 1222211 1224556666677888899999888899887653 23334444332
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
+.+..++++.|.+++||.+++|..|. .++++||+++. +.++++.+++
T Consensus 316 --~~~~~~~~~~ll~~~gi~v~~g~~~~-----------------------------~~~~iRi~~~~--~~~~i~~~l~ 362 (375)
T 3op7_A 316 --DMPMEDFCLQLLQEHGVLLVPGNRFE-----------------------------RDGYVRLGFAC--EQETLIKGLE 362 (375)
T ss_dssp --SSCHHHHHHHHHHHHCEECEEGGGGT-----------------------------CTTEEEECCCS--CHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCEEEeChhhhC-----------------------------CCCeEEEEecC--CHHHHHHHHH
Confidence 13466788887666899999887654 14899999874 4599999999
Q ss_pred HHHHHHHhh
Q 043646 515 ALEFIAAYG 523 (625)
Q Consensus 515 aL~~~~~~~ 523 (625)
+|++++++.
T Consensus 363 ~l~~~l~~~ 371 (375)
T 3op7_A 363 KLSQFLRRF 371 (375)
T ss_dssp HHHHHHGGG
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=228.86 Aligned_cols=332 Identities=13% Similarity=0.023 Sum_probs=223.1
Q ss_pred eEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~ 154 (625)
.+.|..+... +.|+.+.+++.+.+......+. .....++.+++.+++++.+|. +++ +|++| +|+++++.
T Consensus 25 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~t-~g~~~al~ 96 (376)
T 3ezs_A 25 GLDLGIGEPQFETPKFIQDALKNHTHSLNIYPK------SAFEESLRAAQRGFFKRRFKIELKEN-ELIST-LGSREVLF 96 (376)
T ss_dssp CCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCC------TTCCHHHHHHHHHHHHHHHSCCCCGG-GEEEE-SSSHHHHH
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEC-cCcHHHHH
Confidence 4445444332 3568899998876632211111 112345667777777777787 444 89998 78888899
Q ss_pred HHHHHhcccccchhhhhhhhccCC--CCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRD--EERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~--gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++ .++ ||+ |++..+.|+++...++..|++++.++++.++.+++ +|++++. +
T Consensus 97 ~~~~~~---------------~~~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~-----~ 153 (376)
T 3ezs_A 97 NFPSFV---------------LFDYQNPT--IAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKEL-----Q 153 (376)
T ss_dssp HHHHHH---------------TTTCSSCE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHH-----H
T ss_pred HHHHHH---------------cCCCCCCE--EEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhc-----c
Confidence 888877 467 775 89999999999888899999999999987644555 6777776 3
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC-C-----CCCCcEEEEcCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSR-N-----IDGYDAIFLATHKFL 300 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~-~-----~~~~D~v~~S~hK~l 300 (625)
++++|++++++||||.+.| +++|+++|++||+++|+|++++.... +..+... . ..+.++++.|++|++
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 233 (376)
T 3ezs_A 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS 233 (376)
T ss_dssp HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT
T ss_pred CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc
Confidence 6899999999999999987 56777889999999999999885332 1111100 0 125678899999999
Q ss_pred CCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|.|+ ++|+++.++++.. .+.. .......+++......+ .+.+ ......+.
T Consensus 234 g~~G~r~G~~~~~~~~~~--~~~~-------------------------~~~~~~~~~~~~~~~a~-~~~l-~~~~~~~~ 284 (376)
T 3ezs_A 234 SAPGLRSGFIAGDSRLLE--KYKA-------------------------FRAYLGYTSANAIQKAS-EAAW-LDDRHAEF 284 (376)
T ss_dssp TCGGGCCEEEEECHHHHH--HHHH-------------------------HHTTTCCCCCHHHHHHH-HHHH-HCSHHHHH
T ss_pred CCccceeEEEeeCHHHHH--HHHH-------------------------HHhhhcCCCChHHHHHH-HHHH-hCcHHHHH
Confidence 7443 4799998877622 1100 00011123333332221 2222 12223567
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
+.++.+.+++++.+.|. ++. .+ ..+.+.+...+ +..++++.|.+++||.+++|.
T Consensus 285 ~~~~~~~~~~~l~~~l~---~~~--~~----~~~~~~~~~~~-----------------~~~~~~~~l~~~~gi~v~~g~ 338 (376)
T 3ezs_A 285 FRNIYANNLKLARKIFK---NTL--IY----PYSFYVYLPVQ-----------------NGENFAKTLYQNEGIITLPAL 338 (376)
T ss_dssp HHHHHHHHHHHHHHHST---TCC--CC----SBSSEEEEECS-----------------CHHHHHHHHHHHHCCBCEEGG
T ss_pred HHHHHHHHHHHHHHHhc---CCC--CC----CcceEEEEECC-----------------CHHHHHHHHHHhCCEEEeCcH
Confidence 77888888889999887 333 22 23444443332 256788888665899999998
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|+.+. ..++++||+++. +++|+++++++|++++++
T Consensus 339 ~~~~~~-------------------------~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 339 YLGRNR-------------------------IGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp GGCSTT-------------------------TTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred HhCCCC-------------------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 776210 025899999974 999999999999988754
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=232.23 Aligned_cols=161 Identities=14% Similarity=0.119 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--- 196 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--- 196 (625)
....+++++++++++|.+ +++++++|+ +++..++.++ +++||+ |+++.+.|+++..
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~-~ai~~~~~~l---------------~~~gd~--Vl~~~~~y~~~~~~~~ 119 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGM-GAIAATVLTI---------------LKAGDH--LISDECLYGCTHALFE 119 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHH---------------CCTTCE--EEEESCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChH-HHHHHHHHHH---------------hCCCCE--EEEeCCCchhHHHHHH
Confidence 456778999999999985 345554665 7788887776 478885 9999999999887
Q ss_pred -HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEEEeccCcC
Q 043646 197 -SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASG 274 (625)
Q Consensus 197 -~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vivD~A~~~ 274 (625)
.++..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++ +|+++++|++++.
T Consensus 120 ~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 120 HALTKFGIQVDFINTA-----IPGEVKKHMK-----PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp THHHHTTCEEEEECTT-----STTHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTC
T ss_pred HHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCch
Confidence 456679999999876 7889999887 579999999999999999999999999999 9999999999997
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccc
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKAL 315 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~ 315 (625)
+.....+ .+ +.|+++.|+||+|++|++ .|+++++++.
T Consensus 190 ~~~~~~~-~~---~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 190 PMITNPV-DF---GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred hhhCCcc-cc---CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 7643222 23 789999999999998886 5999999876
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-24 Score=231.07 Aligned_cols=360 Identities=13% Similarity=0.040 Sum_probs=228.6
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCC-CCCcch--hhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEe
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNT-HTSDSY--VGQRMTKMVHEASNYIKRCLG--------GGQADAIIFC 145 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~-~~~~~~--~~~~~~~~~~~~~~~ia~~~g--------~~~~~~vift 145 (625)
..+.|..+......+.+.+++.+........+ +..... .++....-..++++.++++++ ++++ +|++|
T Consensus 39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVLT 117 (435)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEEE
T ss_pred CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-HEEEc
Confidence 46788888888888888888876543211000 000000 000001112456666666666 4455 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-HcCCeEEEEecCCC--CCCCHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR-QSLAEVVEIGLDDN--GLLDIEALR 222 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~~--~~ld~~~L~ 222 (625)
+|+++++..++.++ +++||. |+++.+.|+++...++ ..|++++.++.+.+ ..+|+++|+
T Consensus 118 -~gg~~a~~~~~~~l---------------~~~gd~--vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 179 (435)
T 3piu_A 118 -AGATSANETFIFCL---------------ADPGEA--VLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE 179 (435)
T ss_dssp -EHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred -CChHHHHHHHHHHh---------------cCCCCe--EEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence 78888898888877 478885 9999999999987777 68999999998863 468999999
Q ss_pred HHHHHhhh-CCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--------
Q 043646 223 SQLELYKA-AKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI-------- 286 (625)
Q Consensus 223 ~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~-------- 286 (625)
+++++... ..++++|++++++||||.+.+. ++|+++|++||+++|+|++|+.+.. ...+..+..
T Consensus 180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~ 259 (435)
T 3piu_A 180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENS 259 (435)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccccccc
Confidence 99985221 2378999999999999999775 7888899999999999999875221 111111100
Q ss_pred --CCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-
Q 043646 287 --DGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM- 362 (625)
Q Consensus 287 --~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~- 362 (625)
...++++.|++|+||.|+ .+|+++++++.. ...+.. ...+ .+.++..+.
T Consensus 260 ~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~-~~~~~~-------------------------~~~~-~~~~~~~~~~ 312 (435)
T 3piu_A 260 EVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATK-------------------------MSSF-GLVSSQTQHL 312 (435)
T ss_dssp CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHH-HHHHHH-------------------------HGGG-SCCCHHHHHH
T ss_pred CCCCCEEEEEeeecccCCCceeEEEEEeCCHHH-HHHHHH-------------------------Hhhc-CCCCHHHHHH
Confidence 012378889999997443 479999854431 111100 0001 111222221
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 363 IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+.+++.-...-....+..+++.+++++++.+.|.++ +++++.+. .+.+.+...+.... ........+
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~l~~~~~--------~~~~~~~~~ 379 (435)
T 3piu_A 313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGN----AGLFCWVDMRHLLR--------SNTFEAEME 379 (435)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCC----SSSEEEEECGGGSS--------SSSHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC----eeEEEEEEcccccc--------cCCchhHHH
Confidence 122221110001123456677788888999999887 78877553 33444444432100 000002346
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.|.+++||.+++|..|... .++++||+++.. ++++++.++++|++++++
T Consensus 380 ~~~~l~~~~gi~v~~g~~~~~~---------------------------~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 380 LWKKIVYEVHLNISPGSSCHCT---------------------------EPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp HHHHHHHTSCEECEEGGGGTCS---------------------------STTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCCcccCCC---------------------------CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 7788877779999988766411 258999999766 999999999999998876
Q ss_pred h
Q 043646 523 G 523 (625)
Q Consensus 523 ~ 523 (625)
.
T Consensus 432 ~ 432 (435)
T 3piu_A 432 Y 432 (435)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-25 Score=235.03 Aligned_cols=341 Identities=14% Similarity=0.137 Sum_probs=211.3
Q ss_pred cchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
..++.|.+++.+.+...+ ++++...+..........+.+++++++++|++++ .++++ +|+. ++..++.++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~v~~~-sGs~-a~~~a~~~~----- 112 (420)
T 3gbx_A 41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA-NVQPH-SGSQ-ANFAVYTAL----- 112 (420)
T ss_dssp CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHH-HHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc-eeEec-CcHH-HHHHHHHHh-----
Confidence 368899999988874433 4554322211222234556677999999999655 55565 7854 666666665
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HH--cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQ--SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~--~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
+++||. |+++.++|.++...+ .. .+..++.++.+.++.+|+++|++++++ .++++|+++
T Consensus 113 ----------~~~gd~--v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~~ 176 (420)
T 3gbx_A 113 ----------LQPGDT--VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE----HKPKMIIGG 176 (420)
T ss_dssp ----------CCTTCE--EEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH----HCCSEEEEC
T ss_pred ----------cCCCCE--EEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh----cCCeEEEEe
Confidence 478885 888888998854221 22 234566667777788999999999985 368999998
Q ss_pred cccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEec---cccc
Q 043646 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISK---ALYQ 317 (625)
Q Consensus 241 ~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~---~~~~ 317 (625)
+++|+ ...|+++|.++|++||+++|+|++|+.+....+........+|+++.|+||+++||.| |+++.++ .+..
T Consensus 177 ~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~ 253 (420)
T 3gbx_A 177 FSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEELYK 253 (420)
T ss_dssp CTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSC-EEEEESSCCHHHHH
T ss_pred cCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCc-eEEEEcCCcHHHHH
Confidence 87774 5889999999999999999999998755432211111112579999999999988886 9988887 4411
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+.+... ....++++......++.++......+.+.+.++...+++++.+.|.+
T Consensus 254 --~~~~~~~------------------------~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 307 (420)
T 3gbx_A 254 --KLNSAVF------------------------PSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN 307 (420)
T ss_dssp --HHHHHHC----------------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HhhhhcC------------------------CCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Confidence 1110000 00123444444433333332111234567788888889999999987
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
.+++++.+. ....++.+.+.+. +++...+.+.| +++||.++++..+... +..
T Consensus 308 -~g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l-~~~gi~v~~~~~~~~~-~~~--------- 359 (420)
T 3gbx_A 308 -RGYKVVSGG--TENHLFLLDLVDK--------------NLTGKEADAAL-GRANITVNKNSVPNDP-KSP--------- 359 (420)
T ss_dssp -TTCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHH-HHTTEECEEECCTTCS-SCT---------
T ss_pred -cCCeeccCC--CCCeEEEEEcCCC--------------CCCHHHHHHHH-HHCCcEeccccCCCCc-ccc---------
Confidence 478876531 1334444443321 23466777777 5579999873222100 000
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~ 522 (625)
..+..+||+++.. .+++|+++++++|++++.+
T Consensus 360 -------------~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~ 395 (420)
T 3gbx_A 360 -------------FVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN 395 (420)
T ss_dssp -------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred -------------CCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence 0135599998654 4689999999999998766
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=234.60 Aligned_cols=351 Identities=13% Similarity=0.037 Sum_probs=225.4
Q ss_pred EeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 79 TYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
-|+|.+...+ .++.+.+++.+.+... .+..+ ....++++.+++++|.+ +++++++| ++++..++
T Consensus 31 ~~id~~~~~~~~~~~v~~a~~~~~~~~-------~y~~~----~~~~~l~~~la~~~~~~---~~v~~~~G-t~a~~~~l 95 (399)
T 2oga_A 31 PFLDLKAAYEELRAETDAAIARVLDSG-------RYLLG----PELEGFEAEFAAYCETD---HAVGVNSG-MDALQLAL 95 (399)
T ss_dssp CSCCHHHHHHHTHHHHHHHHHHHHHHT-------CCSSS----HHHHHHHHHHHHHTTSS---EEEEESCH-HHHHHHHH
T ss_pred cccccCcCCCCCCHHHHHHHHHHHhcC-------CCCCc----hhHHHHHHHHHHHHCCC---eEEEecCH-HHHHHHHH
Confidence 3666554433 3478888888776420 11111 34677899999999985 46777666 56788777
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
.+++ +++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++
T Consensus 96 ~~~~--------------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~ 154 (399)
T 2oga_A 96 RGLG--------------IGPGDE--VIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAIT-----PRTRA 154 (399)
T ss_dssp HHTT--------------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC-----TTEEE
T ss_pred HHhC--------------CCCcCE--EEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC-----CCCeE
Confidence 7762 467875 99999999999888888999999999986 57899999999987 46887
Q ss_pred EEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEe-c
Q 043646 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH--KFLGGPGTPGILLIS-K 313 (625)
Q Consensus 237 v~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~-~ 313 (625)
|+ ++|+||.+.|+++|.++|+++|+++|+|++++.+... +...+. ...|++++|+| |++++|+..|+++.+ +
T Consensus 155 v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~ 229 (399)
T 2oga_A 155 LL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGRRIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDP 229 (399)
T ss_dssp EC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCH
T ss_pred EE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCeecc-cccCEEEEeCCCCccCCcCCceEEEEeCCH
Confidence 76 4689999999999999999999999999999877542 333331 12599999985 999865556788776 4
Q ss_pred cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 314 ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++. +.+.+....++... +... ...+. .+.+..+.. .++++ ..+.+.++.+.+++++
T Consensus 230 ~~~--~~l~~~~~~g~~~~-----------~~~~-~~g~~-~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l 287 (399)
T 2oga_A 230 ELA--ERLRMLRNYGSRQK-----------YSHE-TKGTN-SRLDEMQAAVLRIRLA-------HLDSWNGRRSALAAEY 287 (399)
T ss_dssp HHH--HHHHHHHBTTCSST-----------TCCC-SCCCB-CCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHhcCcccc-----------cccc-ccccC-CCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 542 22222211111100 0000 00000 122322221 12222 2345667778889999
Q ss_pred HHhhCCCCcEEEeCCCCCCCcce-EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh-Hhh
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAI-LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG-HTL 469 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i-~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~-~~~ 469 (625)
.+.|.+++++++....+ ...++ +.|.+.. .+..++.+.|.+ +||.++.++... ... ..+
T Consensus 288 ~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~l~~~L~~-~gI~v~~~~~~~-~~~~~~~ 348 (399)
T 2oga_A 288 LSGLAGLPGIGLPVTAP-DTDPVWHLFTVRT----------------ERRDELRSHLDA-RGIDTLTHYPVP-VHLSPAY 348 (399)
T ss_dssp HHHTTTCTTCBCCCCCT-TEECCCSSEEEEC----------------SSHHHHHHHHHH-TTBCCBCSCSSC-GGGSHHH
T ss_pred HHHhccCCCccccCCCC-CCcceeEEEEEEC----------------CCHHHHHHHHHH-CCCceecCCCCc-cccchhh
Confidence 99999988887654221 11122 1222221 135678888865 799998765211 000 001
Q ss_pred hcCCh-----hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQ-----TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~-----~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..++. +....+ ..+++||+++.++|++|+++++++|++++++
T Consensus 349 ~~~~~~~~~~p~~~~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 349 AGEAPPEGSLPRAESF-----------ARQVLSLPIGPHLERPQALRVIDAVREWAER 395 (399)
T ss_dssp HTTSCCTTSCHHHHHH-----------HHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred cccCCCCCCChhHHHH-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11110 000000 1278999999999999999999999998765
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=238.13 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++++++ +|++ + ++++| +|+++++..++.++ +++||+ |+++..+|+++..++..
T Consensus 57 ~~~~~~~~~la~-~g~~-~-~v~~~-~G~t~a~~~~~~a~---------------~~~gd~--Vlv~~~~h~s~~~~~~~ 115 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-D-GYFLV-NGTTSGILSVIQSF---------------SQKKGD--ILMARNVHKSVLHALDI 115 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-E-EEEES-SHHHHHHHHHHHTT---------------TTSSSC--EEECTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHh-cCCC-c-eEEEe-CCHHHHHHHHHHHh---------------cCCCCE--EEEecCccHHHHHHHHH
Confidence 356789999999 9986 3 68887 88988888888776 478886 99999999999999999
Q ss_pred cCCeEEEEec--CCC----CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 201 SLAEVVEIGL--DDN----GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 201 ~G~~vv~v~~--~~~----~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
.|++++.++. +++ +.+|+++| +. +++++|++++ +|+||.+.|+++|+++|++||+++++|+||+.
T Consensus 116 ~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~-----~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 116 SQQEGHFIETHQSPLTNHYNKVNLSRL---NN-----DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp HTCCEEECEEEECTTTSSEEEEEC---------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT
T ss_pred cCCeEEEEeCeeccccCcCCCCCHHHH---cC-----CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh
Confidence 9999999988 554 46788877 33 5789999999 66799999999999999999999999999886
Q ss_pred CCc-----cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 275 PYV-----KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 275 g~~-----~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
+. +.+.... ++|+++.|+||+++++.|+|+++++++.. + ..+.. ...
T Consensus 187 -~~~f~~~~~~~~~~---g~Di~~~S~~K~l~~~~g~g~l~~~~~~i--~-~~~~~---------------------~~~ 238 (446)
T 2x3l_A 187 -HFGLQGFPDSTLNY---QADYVVQSFHKTLPALTMGSVLYIHKNAP--Y-RENII---------------------EYL 238 (446)
T ss_dssp -TTTSTTSCCCGGGG---TCSEEEECHHHHSSSCTTCEEEEEETTCT--T-HHHHH---------------------HHH
T ss_pred -hhccCCCCCChHHc---CCCEEEECCccccccccccEEEEEcCCcC--C-HHHHH---------------------HHH
Confidence 33 3333333 68999999999888888899999988762 1 11110 001
Q ss_pred hhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 350 ERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
..+..++++....+. ++++++ +..|.+.+.++.+.+++++++. +++++.+.+ ...+.+.+.
T Consensus 239 ~~~~~~s~~~~~~aal~~a~~~l--~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~---~~~l~i~~~------- 301 (446)
T 2x3l_A 239 SYFQTSSPSYLIMASLESAAQFY--KTYDSTLFFAKRAQLIECLENK-----GFEMLQVDD---PLKLLIKYE------- 301 (446)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSS---TTEEEEECT-------
T ss_pred HHHcCCCchHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCC---CeEEEEEeC-------
Confidence 234566777665432 344444 4456666788888888888887 677776532 123333332
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeee-cCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQAR-GGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
+++..++.+.|.++ ||.++ +| .+++|++++.++|+
T Consensus 302 ---------~~~~~~l~~~L~~~-GI~v~~~g----------------------------------~~~iRi~~~~~~t~ 337 (446)
T 2x3l_A 302 ---------GFTGHDIQNWFMNA-HIYLELAD----------------------------------DYQALAILPLWHHD 337 (446)
T ss_dssp ---------TSCHHHHHHHHHHT-TEEESEEC----------------------------------SSCEEEECCCCCTT
T ss_pred ---------CcCHHHHHHHHHHC-CCEEEecC----------------------------------CCEEEEEeecCCCH
Confidence 23467899988764 99986 32 26799999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 043646 507 EEFEFILAALEFIAAYG 523 (625)
Q Consensus 507 edid~ll~aL~~~~~~~ 523 (625)
+|+ +++++|+++++..
T Consensus 338 e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 338 DTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp CCC-CHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHHHHHhh
Confidence 999 9999999987654
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=234.36 Aligned_cols=346 Identities=13% Similarity=0.050 Sum_probs=223.5
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.++.+.+++.+.+.... +. .......++++.+++++|.+ .++++++|+ +++..++.+++
T Consensus 34 ~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~---~~i~~~~gt-~al~~~l~~~~------- 92 (391)
T 3dr4_A 34 LDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK---HAIACNNGT-TALHLALVAMG------- 92 (391)
T ss_dssp CCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHHcC-------
Confidence 34677777777663211 10 01234678999999999986 578886664 56777777663
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG 247 (625)
+++||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+ ++|+||
T Consensus 93 -------~~~gd~--vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~---~~n~tG 155 (391)
T 3dr4_A 93 -------IGPGDE--VIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALIT-----PRTKAIM---PVHLYG 155 (391)
T ss_dssp -------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC-----TTEEEEC---CBCGGG
T ss_pred -------CCCcCE--EEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcC-----CCceEEE---EECCCC
Confidence 467885 99999999999999999999999999984 67899999999887 5788777 467999
Q ss_pred cccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEc--CCCCCCCCCCceEEEEeccccccCCCCCcc
Q 043646 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA--THKFLGGPGTPGILLISKALYQLGSSPPST 325 (625)
Q Consensus 248 ~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~l~v~~~~~~l~~~~p~~ 325 (625)
.+.|+++|.++|+++|+++|+|++++.|....+..... ..|++++| .||+++++. .|+++.++... .+.+.+..
T Consensus 156 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~-gg~~~~~~~~~-~~~~~~~~ 231 (391)
T 3dr4_A 156 QICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGE-GGMITTNDDDL-AAKMRLLR 231 (391)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBS-CEEEEESCHHH-HHHHHHHH
T ss_pred ChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCC-eEEEEECCHHH-HHHHHHHH
Confidence 99999999999999999999999999876654432211 12555555 779998643 57877766531 11122222
Q ss_pred cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeC
Q 043646 326 CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG 405 (625)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~ 405 (625)
.+|... ...+... ...+..+... +.+++.+. ...+.+.+.++.+.+++++.+.|.++ ++++..
T Consensus 232 ~~g~~~---------~~~~~~~-~~g~~~~~~~----l~aa~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 294 (391)
T 3dr4_A 232 GQGMDP---------NRRYWFP-IVGFNYRMTN----IQAAIGLA--QLERVDEHLAARERVVGWYEQKLARL-GNRVTK 294 (391)
T ss_dssp BTTCCT---------TSTTCCS-SCCCBCBCCH----HHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEEC
T ss_pred hcCCCC---------CCccccc-ccccccCCCH----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC
Confidence 222110 0000000 0001111111 12223332 23456778888899999999999988 777766
Q ss_pred C--CCC-CCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC---CCCchhhHhhhcCChhhHH
Q 043646 406 N--TSV-KRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC---ACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 406 ~--~~~-~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~---~~~~~~~~~~l~~~~~~~~ 478 (625)
+ ... ... .++.+.+... .+++..++.+.|.+ +||.+++|. +|..++... ....-+.+.
T Consensus 295 ~~~~~~~~~~~~~~~i~~~~~-------------~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~-~~~~~~~~~ 359 (391)
T 3dr4_A 295 PHVALTGRHVFWMYTVRLGEG-------------LSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHL-ATDDLKIAE 359 (391)
T ss_dssp CCCCTTSCCCCSSEEEEECSS-------------CSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGG-CCTTCHHHH
T ss_pred cCCCCCCcceeEEEEEEECCc-------------cchhHHHHHHHHHH-CCCceeecCCccccChhhhhc-CcCCChHHH
Confidence 5 221 122 2344444221 13457789999965 699999886 444332221 000111111
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.+ ..+.+||+++.++|++||++++++|+++
T Consensus 360 ~~-----------~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 360 AC-----------GVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp HH-----------HHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred HH-----------HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 11 1378999999999999999999999865
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-24 Score=222.34 Aligned_cols=320 Identities=13% Similarity=0.062 Sum_probs=219.6
Q ss_pred CceEeccCCC-CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 76 RRLTYADHTA-SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 76 ~~~~Yld~~~-~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
+.++.|..+. ..++++.+.+++.+.+.....++... ..++++++++++|++++ +|++| +|+++++.
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~i~~t-~g~~~al~ 81 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-----------AGTLRQMLAKRNSVDNN-AILVT-NGPTAAFY 81 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHTTCCGG-GEEEE-SHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-----------HHHHHHHHHHHhCcCHH-HEEEc-CCHHHHHH
Confidence 4556666553 33467889999988774333333321 14689999999998776 89998 89999999
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CCCCCCCHHHHHHHHHHhhhCCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++.++ . ||+ |+++.+.|+++...++..|++++.+++ +..+.+++ ++
T Consensus 82 ~~~~~l----------------~-gd~--Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-------------~~ 129 (350)
T 3fkd_A 82 QIAQAF----------------R-GSR--SLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF-------------SN 129 (350)
T ss_dssp HHHHHT----------------T-TCE--EEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC-------------TT
T ss_pred HHHHHH----------------C-CCE--EEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc-------------CC
Confidence 998876 2 665 899999999998889999999999998 65344443 36
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHHcC-CEEEEeccCcCCCcccc--CCCCCCCCCcEEEEcCCCCCCCC-CCceEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQYG-GFACFDFAASGPYVKIN--LRSRNIDGYDAIFLATHKFLGGP-GTPGIL 309 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~~g-~~vivD~A~~~g~~~id--~~~~~~~~~D~v~~S~hK~lggp-~g~G~l 309 (625)
+++|++++++||||.+.|+++|.++++.++ .++++|++++.....-. .......+.++++.|++|+++.| .++|++
T Consensus 130 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~ 209 (350)
T 3fkd_A 130 MDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYI 209 (350)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEE
T ss_pred CCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeE
Confidence 899999999999999999999999999876 79999999874322111 01111124568889999999744 358999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYI-GYEVIKKQEDVYI 388 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~-g~~~i~~~~~~l~ 388 (625)
++++++.. .+.... ...+++..... ++.+++ .... -.+.+.++. .++
T Consensus 210 ~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~-~~~ 257 (350)
T 3fkd_A 210 VANKDFMK--RVAAFS---------------------------TPWAVNALAIE-AAKFIL-IHPAQFTLPIRKWQ-RNT 257 (350)
T ss_dssp ECCHHHHH--HHHTTC---------------------------CTTCSCHHHHH-HHHHHH-HCTTTTCCCHHHHH-HHH
T ss_pred EeCHHHHH--HHHHhC---------------------------CCCCCCHHHHH-HHHHHH-hCHHHHHHHHHHHH-HHH
Confidence 99777632 111100 11223333321 222222 1211 123334444 678
Q ss_pred HHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHh
Q 043646 389 ESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHT 468 (625)
Q Consensus 389 ~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~ 468 (625)
+++.+.|.++|++++..+ .+..+.+.+ +.. +..++.+.|.+++||.+++|..|...
T Consensus 258 ~~l~~~L~~~~~~~~~~~----~~~~~~~~~-~~~---------------~~~~l~~~L~~~~gi~v~~g~~f~~~---- 313 (350)
T 3fkd_A 258 VDFITALNRLDGVEVHPS----GTTFFLLRL-KKG---------------TAAELKKYMLEEYNMLIRDASNFRGL---- 313 (350)
T ss_dssp HHHHHHHHHSTTEEECCC----SSSEEEEEE-SSS---------------CHHHHHHHHHHTTCEECEECTTSTTC----
T ss_pred HHHHHHHhcCCCcEECCC----CCcEEEEEC-CCC---------------CHHHHHHHHHHHCCEEEEeCccCCCC----
Confidence 888899988889988644 234443333 211 36788888876589999999887511
Q ss_pred hhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 469 LLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++++|||++ +++|+++++++|+++..+
T Consensus 314 -----------------------~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 314 -----------------------DESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp -----------------------CTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred -----------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 2589999997 899999999999988754
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=227.33 Aligned_cols=312 Identities=13% Similarity=0.105 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC
Q 043646 120 TKMVHEASNYIKRCLGGGQ--------ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH 191 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~--------~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (625)
.++.+++.+++++.+|.+. +++|++| +|+++++..++.++ +++||+ |++..+.|
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~gd~--Vlv~~p~y 142 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVT-SGSQQGLCKVFEMI---------------INPGDN--VLLDEPAY 142 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEE-SSHHHHHHHHHHHH---------------CCTTCE--EEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEe-CcHHHHHHHHHHHh---------------CCCCCE--EEEeCCCc
Confidence 4567778888888889865 2489998 89999999998887 578885 99999999
Q ss_pred chhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-------hCCCCeEEEE-ecccCccccccCHH---HHHHHHH
Q 043646 192 HSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-------AAKRPMLGSF-SACSNVTGIYSDTR---SIARLLH 260 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-------~~~~~~lv~~-~~~~n~TG~~~~l~---~I~~la~ 260 (625)
+++...++..|++++.++++.++ +|+++|++++++.. ..+++++|++ ++++||||.+.+.+ +|+++|+
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~ 221 (425)
T 2r2n_A 143 SGTLQSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELAR 221 (425)
T ss_dssp HHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHH
Confidence 99988888899999999987654 89999999987210 0135788766 79999999998865 8999999
Q ss_pred HcCCEEEEeccCcC----CCccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeec
Q 043646 261 QYGGFACFDFAASG----PYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVN 335 (625)
Q Consensus 261 ~~g~~vivD~A~~~----g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~ 335 (625)
+||+++|+|++++. +....++..+...+.++++.|++|+|+ |+ .+|++++++++.. .+..
T Consensus 222 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~--~l~~------------ 286 (425)
T 2r2n_A 222 KYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIE--RVIL------------ 286 (425)
T ss_dssp HTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHH--HHHH------------
T ss_pred HcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHH--HHHH------------
Confidence 99999999999872 222233333322245688899999997 54 4799999987732 1110
Q ss_pred cccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHhhCC-CCcE-EEeCCCCC
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKE--YIGYEVIKKQEDVYIESALGRILP-NQNI-QVLGNTSV 409 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~--~~g~~~i~~~~~~l~~~l~~~L~~-l~gv-~v~~~~~~ 409 (625)
.......+++..... .+++..+..+ ....+.++++.+..++++.+.|.+ +|++ .+..+
T Consensus 287 -------------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p--- 350 (425)
T 2r2n_A 287 -------------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP--- 350 (425)
T ss_dssp -------------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC---
T ss_pred -------------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC---
Confidence 001111223332221 2222221000 012345666777778888888876 5776 44444
Q ss_pred CCcceEEEEeccCCCCCCccccccCCCCCChHH-HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 410 KRQAILSFLVYSTTNSSPENMKIERNKPLHGPF-VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 410 ~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~-v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
..+.+.+...+.. .+..+ +.+.|. ++||.+++|..|..+..
T Consensus 351 -~~g~~~~~~~~~~--------------~~~~~~~~~~l~-~~gv~v~pg~~f~~~~~---------------------- 392 (425)
T 2r2n_A 351 -AAGMFLWIKVKGI--------------NDVKELIEEKAV-KMGVLMLPGNAFYVDSS---------------------- 392 (425)
T ss_dssp -SBSSEEEEEETTC--------------SCCHHHHHTHHH-HTTEECEEGGGGSSSTT----------------------
T ss_pred -CceEEEEEEeCCC--------------CCHHHHHHHHHH-HCCcEEechhhhcCCCC----------------------
Confidence 3455555544421 12334 566664 58999999887652100
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
...+++||+++. .+++++++++++|++++++
T Consensus 393 --~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 393 --APSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp --SCCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 024899999984 5999999999999988764
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-23 Score=217.46 Aligned_cols=304 Identities=15% Similarity=0.125 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW- 198 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (625)
.....++++.+++++|.+ + .++++ +| ++++..++.++ +++||+ |+++..+|+++...+
T Consensus 51 ~~~~~~l~~~la~~~~~~-~-~i~~~-sG-t~a~~~~~~~~---------------~~~g~~--vl~~~~~~~~~~~~~~ 109 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA-G-AVLTN-TG-MSAIHLVTTVF---------------LKPGDL--LVAPHDCYGGSYRLFD 109 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCC-c-EEEeC-CH-HHHHHHHHHHH---------------hCCCCE--EEEecCCcHhHHHHHH
Confidence 345678999999999986 3 67775 78 67788887776 467875 899999999876655
Q ss_pred ---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 199 ---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 199 ---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
+..|++++.++.+ |+++|+++++ +++++|++++++|+||.+.|+++|.++|++||+++|+|++++.+
T Consensus 110 ~~~~~~g~~~~~~~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 110 SLAKRGCYRVLFVDQG-----DEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp HHHTTTSCEEEEECTT-----CHHHHHHHHH-----TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred HHHHhcCCEEEEeCCC-----CHHHHHHhhc-----cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4468999999864 8999999998 57999999999999999999999999999999999999999987
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCCc--eEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGTP--GILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g~--G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
.....+ .. +.|+++.|+||++++|++. |++++++ ++. +.+.+.. ..+
T Consensus 180 ~~~~~~-~~---~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~--~~l~~~~------------------------~~~ 229 (386)
T 1cs1_A 180 ALQNPL-AL---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV--TELAWWA------------------------NNI 229 (386)
T ss_dssp TTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEESSHHHH--HHHHHHH------------------------HHH
T ss_pred ccCCcc-cc---CceEEEEcCcccccCCCCceeEEEEeCcHHHH--HHHHHHH------------------------Hhc
Confidence 654333 23 7899999999999988874 9999987 552 1111110 011
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCC-------------CCCCcceEEEE
Q 043646 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNT-------------SVKRQAILSFL 418 (625)
Q Consensus 353 ~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~-------------~~~~~~i~~f~ 418 (625)
.++.+...... ++..+ + ..+...++....++++.+.|.+++.+.-+ .+. ....+++++|.
T Consensus 230 -~~~~~~~~~~~-~~~~l--~--~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (386)
T 1cs1_A 230 -GVTGGAFDSYL-LLRGL--R--TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303 (386)
T ss_dssp -TCBCCHHHHHH-HHHHH--T--THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred -CCCCCHHHHHH-HHhcc--c--HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEE
Confidence 12233222211 11111 1 23334455566677788888877766432 221 01246778777
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec---C------CCCCchhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG---G------CACAGPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~---G------~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
+.. ....+.+.| ++.||.+++ | ++|.... + ......... ..
T Consensus 304 ~~~-----------------~~~~~~~~l-~~~gi~~~~~~~g~~~sl~~~~~~~~-~--~~~~~~~~~---------~~ 353 (386)
T 1cs1_A 304 LDG-----------------DEQTLRRFL-GGLSLFTLAESLGGVESLISHAATMT-H--AGMAPEARA---------AA 353 (386)
T ss_dssp ESS-----------------CHHHHHHHH-HTCSSSEEBSCCCSSSCEEEEGGGTT-T--TTSCHHHHH---------HH
T ss_pred ECC-----------------CHHHHHHHH-HhCCcceEcccCCCcceeeecccccc-c--ccCCHHHHH---------hc
Confidence 532 134677777 457999984 4 3332110 0 000000000 01
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
|+.++++|||++..+++++++.+.++|+++.
T Consensus 354 g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 354 GISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 2346899999999999999999999998763
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=234.59 Aligned_cols=360 Identities=13% Similarity=0.053 Sum_probs=209.4
Q ss_pred ceE-eccCCCCCcchHHHHHHHHHhhCCCCCC-------CC-C---CcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcE
Q 043646 77 RLT-YADHTASGRSLRYIEDYIINNVLPFYGN-------TH-T---SDSYVGQRMTKMVHEASNYIKRCLG--GGQADAI 142 (625)
Q Consensus 77 ~~~-Yld~~~~~~~p~~v~ea~~~~l~~~~~n-------~~-~---~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~v 142 (625)
..+ +|.++.... ++.+.+++.+.+...+.+ ++ . ..|.......++.+++.+++.+.+| ++++ +|
T Consensus 32 ~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i 109 (444)
T 3if2_A 32 QPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE-NI 109 (444)
T ss_dssp SCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GE
T ss_pred hhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-HE
Confidence 466 787776554 344555554444433344 32 0 1111111223444444444444444 4455 89
Q ss_pred EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC------------ceEEEEc-CCCCchhHHH------HHHcCC
Q 043646 143 IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE------------RWVVFLG-PYEHHSNLLS------WRQSLA 203 (625)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd------------~~~Vlv~-~~~h~s~~~~------~~~~G~ 203 (625)
+|| +|+++++..++.++ +++|| ...|+++ .++|+.+... +...|.
T Consensus 110 ~~t-~G~t~al~~~~~~l---------------~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~ 173 (444)
T 3if2_A 110 ALT-NGSQNAFFYLFNLF---------------GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP 173 (444)
T ss_dssp EEE-SSHHHHHHHHHHHS---------------SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC
T ss_pred EEe-cCcHHHHHHHHHHH---------------hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc
Confidence 999 78898899988877 34554 0126654 7777776542 233577
Q ss_pred eEEEEecCC-CC----CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC
Q 043646 204 EVVEIGLDD-NG----LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 204 ~vv~v~~~~-~~----~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g 275 (625)
.++.++++. +| .+|+++|++++.. ..+++++|++++++||||.+.| +++|+++|++||+++|+|++++.+
T Consensus 174 ~~~~~~~~~~~g~~~~~~d~~~l~~~l~~--~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~ 251 (444)
T 3if2_A 174 HIDEVTHDGEEGFFKYRVDFEALENLPAL--KEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP 251 (444)
T ss_dssp EEEEEEETTEEEEEEEECCHHHHHTCHHH--HTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT
T ss_pred eEEecccccccCccccCCCHHHHHHHHHh--cCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc
Confidence 888888875 33 6899999998531 0167999999999999999999 888999999999999999998753
Q ss_pred CccccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 276 YVKINLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 276 ~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
......... ...+.++++.|+||++....++|+++.++++.. .+... .....
T Consensus 252 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~--~~~~~------------------------~~~~~ 305 (444)
T 3if2_A 252 FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIE--AVSAM------------------------NAVVN 305 (444)
T ss_dssp TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHH--HHHHH------------------------HHHHH
T ss_pred ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHH--HHHHH------------------------HHhcc
Confidence 322221111 112567899999997432235898888877621 11000 11111
Q ss_pred CCChhHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHhhCC-CC--cEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 354 GGTPQIVQMIRAALAFWVKEY---IGYEVIKKQEDVYIESALGRILP-NQ--NIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 354 ~gt~~~~~~~~aal~~~~~~~---~g~~~i~~~~~~l~~~l~~~L~~-l~--gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
.+.+.+.+.+ +..++.... .-.+.+.++.+++++++.+.|.+ ++ ++.+..+. .+.+.+...+..
T Consensus 306 ~~~~~~~~~a--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~~~---- 375 (444)
T 3if2_A 306 LAPTRFGAAI--ATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE----GAIFLWLWFKDL---- 375 (444)
T ss_dssp SSCCCHHHHH--HHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC----BSSEEEEEETTC----
T ss_pred CCCChHHHHH--HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC----ccEEEEEEcCCC----
Confidence 2222222211 111110000 00011333334444444444432 23 56766553 344444443321
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
+++..++.+.|. ++||.+++|..|.......-. ...++++|||++. +++
T Consensus 376 ---------~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~~-------------------~~~~~~iRis~~~--~~e 424 (444)
T 3if2_A 376 ---------PISTLDLYERLK-AKGTLIVPSEYFFPGVDVSDY-------------------QHAHECIRMSIAA--DEQ 424 (444)
T ss_dssp ---------SSCHHHHHHHHH-HTTEECEEGGGSCTTCCCTTC-------------------SGGGSEEEEESSS--CHH
T ss_pred ---------CCCHHHHHHHHH-HCCeEEecchhhcCCCCCccc-------------------ccCCCeEEEEEeC--CHH
Confidence 245678888884 579999999888521000000 0013789999986 999
Q ss_pred HHHHHHHHHHHHHHhh
Q 043646 508 EFEFILAALEFIAAYG 523 (625)
Q Consensus 508 did~ll~aL~~~~~~~ 523 (625)
++++++++|++++.+.
T Consensus 425 ~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 425 TLIDGIKVIGEVVREL 440 (444)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=228.46 Aligned_cols=328 Identities=12% Similarity=0.059 Sum_probs=207.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
..++||+++....+++.+.+++.+.... .. .|.. .....++++++++++|.+ .++++++|+.+ +..
T Consensus 3 ~~~i~~~~~~~~~p~~~~~~a~~~~~~~----~~--~y~~----~~~~~~l~~~la~~~g~~---~~~~~~~gt~a-~~~ 68 (347)
T 1jg8_A 3 HMMIDLRSDTVTKPTEEMRKAMAQAEVG----DD--VYGE----DPTINELERLAAETFGKE---AALFVPSGTMG-NQV 68 (347)
T ss_dssp --CEECSCGGGCCCCHHHHHHHHTCCCC----CG--GGTC----CHHHHHHHHHHHHHHTCS---EEEEESCHHHH-HHH
T ss_pred ceEEEeccccCCCCCHHHHHHHhcCCCC----Cc--ccCC----ChHHHHHHHHHHHHhCCc---eEEEecCcHHH-HHH
Confidence 5678999999888888888888654311 00 1111 123567899999999974 45777677654 555
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL---SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AA 231 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~ 231 (625)
++.++ +++||+ |+++.++|.+... ..+..|++++.+ .++++.+|+++|++++++.. ..
T Consensus 69 ~~~~~---------------~~~gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~ 130 (347)
T 1jg8_A 69 SIMAH---------------TQRGDE--VILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHF 130 (347)
T ss_dssp HHHHH---------------CCTTCE--EEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTS
T ss_pred HHHHh---------------cCCCCE--EEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccc
Confidence 55555 478885 8899999876542 456679999988 55567789999999987210 01
Q ss_pred CCCeEEEEecccCcc-ccccCH---HHHHHHHHHcCCEEEEeccCcCC---CccccCCCCCCCCCcEEEEcCCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVT-GIYSDT---RSIARLLHQYGGFACFDFAASGP---YVKINLRSRNIDGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 232 ~~~~lv~~~~~~n~T-G~~~~l---~~I~~la~~~g~~vivD~A~~~g---~~~id~~~~~~~~~D~v~~S~hK~lggp~ 304 (625)
+++++|++++++||| |.+.|. ++|+++|++||+++++|+++..+ +...+...+. .++|.+++|+||++++|.
T Consensus 131 ~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~l~~~~ 209 (347)
T 1jg8_A 131 PRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA-GYADSVMFCLSKGLCAPV 209 (347)
T ss_dssp CCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHH-HTCSEEEEESSSTTCCSS
T ss_pred cCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhc-ccccEEEEecccccCCCc
Confidence 268999999999999 999774 68899999999999999987432 1122222111 157888899999998775
Q ss_pred CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh---hHHHHH-HHHHHHHHHhhcCHHHH
Q 043646 305 TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP---QIVQMI-RAALAFWVKEYIGYEVI 380 (625)
Q Consensus 305 g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~---~~~~~~-~aal~~~~~~~~g~~~i 380 (625)
| |+++.++++.+ .+.... ..+ .++. .+.+.+ ..+++ .. .+.+
T Consensus 210 G-~~~~~~~~~~~--~~~~~~------------------------~~~-~~~~~~~~~~~~~~~~~l~----~~--~~~~ 255 (347)
T 1jg8_A 210 G-SVVVGDRDFIE--RARKAR------------------------KML-GGGMRQAGVLAAAGIIALT----KM--VDRL 255 (347)
T ss_dssp C-EEEEECHHHHH--HHHHHH------------------------HHH-TCCCSSTHHHHHHHHHHHH----HS--STTH
T ss_pred e-EEEEcCHHHHH--HHHHHH------------------------HHc-CCchhHHHHHHHHHHHHHH----HH--HHHH
Confidence 4 35555665521 110000 000 1111 111111 11221 11 1122
Q ss_pred HHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCC
Q 043646 381 KKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCA 460 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~ 460 (625)
. +..+.++++.+.|+++ ++++..+ ...++++.+.+ +. .+.+..++.+.|.+ +||.++++.
T Consensus 256 ~-~~~~~~~~l~~~L~~~-~~~~~~~--~~~~~~~~~~~-~~-------------~~~~~~~~~~~l~~-~gi~v~~~~- 315 (347)
T 1jg8_A 256 K-EDHENARFLALKLKEI-GYSVNPE--DVKTNMVILRT-DN-------------LKVNAHGFIEALRN-SGVLANAVS- 315 (347)
T ss_dssp H-HHHHHHHHHHHHHHHH-TCBCCGG--GCCSSEEEEEC-TT-------------SSSCHHHHHHHHHH-HTEECEEEE-
T ss_pred H-HHHHHHHHHHHHHHhc-CceeccC--CCcceEEEEEc-cc-------------ccCCHHHHHHHHHH-CCCEEecCC-
Confidence 2 2233466777777665 5554321 12344444433 21 02346788888864 799998531
Q ss_pred CCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 461 CAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 461 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||+++.+++++|+++++++|++++..
T Consensus 316 --------------------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 316 --------------------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp --------------------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 278999999999999999999999988653
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=227.13 Aligned_cols=343 Identities=13% Similarity=0.043 Sum_probs=226.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL----GGGQADAIIFCGAGTT 150 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~----g~~~~~~vift~sGtt 150 (625)
+..+.|..+... +.++.|.+++.+.+.....+.....|.. .....++++.+++++ +.+++ +|+|| +|++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~----~~g~~~lr~~ia~~~~~g~~~~~~-~i~~t-~G~~ 142 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGA----EQGQGALREAVASTFYGHAGRAAD-EIFIS-DGSK 142 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTT----TTCCHHHHHHHHHHHHTTTTCCGG-GEEEE-SCHH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCC----CCCcHHHHHHHHHHHHcCCCCCHH-HEEEc-cCHH
Confidence 456777766544 3678899999888764322222111211 122455777777777 55555 89998 7899
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe----------EEEEecCCCC--CCCH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE----------VVEIGLDDNG--LLDI 218 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~----------vv~v~~~~~~--~ld~ 218 (625)
+++..+ ..+ +++||+ |+++.+.|+++...++..|++ ++.++++.++ ..|+
T Consensus 143 ~al~~~-~~l---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (449)
T 3qgu_A 143 CDIARI-QMM---------------FGSKPT--VAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL 204 (449)
T ss_dssp HHHHHH-HHH---------------HCSSSC--EEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG
T ss_pred HHHHHH-HHH---------------hCCCCE--EEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh
Confidence 989888 554 468886 999999999999899999998 9999988643 3333
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC----CccccCCCCC-CCCCc
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP----YVKINLRSRN-IDGYD 290 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g----~~~id~~~~~-~~~~D 290 (625)
++ .+++++|++++++||||.+.+ +++|+++|++||+++|+|++++.. ..+..+..+. ..+.+
T Consensus 205 ~~----------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 274 (449)
T 3qgu_A 205 SK----------AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVA 274 (449)
T ss_dssp GG----------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTE
T ss_pred hH----------cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcE
Confidence 21 147899999999999999977 778888999999999999998752 2222333221 12457
Q ss_pred EEEEcCCCCCCCC-CCceEEEEeccccccCC-CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 291 AIFLATHKFLGGP-GTPGILLISKALYQLGS-SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
+++.|++|+||.| ..+|++++++++. .. ..+.. ..+.. .......+++..+.. ++.+
T Consensus 275 i~~~s~sK~~g~~G~r~G~~~~~~~~~--~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~-a~~~ 333 (449)
T 3qgu_A 275 IETCSFSKYAGFTGVRLGWTVVPKALK--YANGEPVH-----------------ADWNR-VMTTCFNGASNIVQA-GGLA 333 (449)
T ss_dssp EEEEECSGGGTCTTCCCEEEECCTTCB--CTTSCBHH-----------------HHHHH-HHHHSCCCCCHHHHH-HHHH
T ss_pred EEEecchhhcCCccceeEEEecCHHHH--hhhhhhHH-----------------HHHHH-HhhcccCCCCHHHHH-HHHH
Confidence 8899999999734 3589999988772 21 00000 00000 111122233333322 1222
Q ss_pred HHHH-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWVK-EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+.. .....+.+.++.+.+++++.+.|.++ ++++..+. .+.+.+...++ ++..++++.|
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~l 393 (449)
T 3qgu_A 334 CLQPEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGD----DAPYIWVGFPG---------------KPSWDVFAEI 393 (449)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESS----SSSEEEEECTT---------------SCHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCC----CeeEEEEECCC---------------CCHHHHHHHH
Confidence 2210 11235577788888899999999887 77776553 23344443332 2466788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++||.+++|..|+.. .++++|||+. .+++++++++++|++++.+
T Consensus 394 ~~~~gI~v~pg~~f~~~---------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 394 LERCNIVTTPGSGYGPA---------------------------GEGFVRASAF--GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHCEECEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred HHHCCEEEecchHhCCC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 77789999999877621 2489999964 4999999999999988754
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=231.53 Aligned_cols=359 Identities=15% Similarity=0.137 Sum_probs=209.4
Q ss_pred CCcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHH-HHHHHHHHHHHHHHhCCCCCC--cEEEeCChHHHHHHHHHHHh
Q 043646 86 SGRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRM-TKMVHEASNYIKRCLGGGQAD--AIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~-~~~~~~~~~~ia~~~g~~~~~--~vift~sGttaal~~l~~~l 160 (625)
..+.++.|++++...+...| ++|+.. +..|..+ ..+.+.+++++++++|++.++ ..+++++|+.+ +..++.++
T Consensus 63 ~n~~~~~V~eA~~~~l~~~y~~G~~g~r-~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~A-n~~al~al 140 (490)
T 2a7v_A 63 ENFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA-NLAVYTAL 140 (490)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCccCCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHH-HHHHHHHH
Confidence 34568899999988886655 667653 3334333 245557889999999998642 13555467655 55555555
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--------HHHHcCCe--EEEEecC-CCCCCCHHHHHHHHHHhh
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--------SWRQSLAE--VVEIGLD-DNGLLDIEALRSQLELYK 229 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--------~~~~~G~~--vv~v~~~-~~~~ld~~~L~~~l~~~~ 229 (625)
++|||+ |+++..+|.+... .+...|.. ++.++++ .++.+|+++|++++..
T Consensus 141 ---------------~~pGD~--Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~-- 201 (490)
T 2a7v_A 141 ---------------LQPHDR--IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL-- 201 (490)
T ss_dssp ---------------CCSCEE--CCC-------------------------------CCBCTTTCSBCHHHHHHHHHH--
T ss_pred ---------------cCCCCE--ecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh--
Confidence 578986 8888888765431 22344554 3444555 3689999999999974
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
.++++|+++.++|+ ...|+++|+++|++||+++++|+||+.|.+..+.......++|++++|+||+|+||.| |++
T Consensus 202 --~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~G-G~i 276 (490)
T 2a7v_A 202 --FRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLI 276 (490)
T ss_dssp --HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEE
T ss_pred --cCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccc-hhe
Confidence 36888888776665 5679999999999999999999998755432221111112689999999999998987 999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
+++++....+ +. .+....+ +.....+........|+|+...+.+.+.++........+...++...+++
T Consensus 277 ~~~~~~~~~~---~~--~~~~~~~------~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~ 345 (490)
T 2a7v_A 277 FYRKGVKAVD---PK--TGREIPY------TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNAR 345 (490)
T ss_dssp EEECSEEEEE---TT--TEEEEEC------CCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred eeccchhccc---cc--ccchhhH------HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9988641100 00 0000000 00000000001112345555444332222221111234667788888999
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|.+. |++++.+. ....++.+.+.+ .++++.++.+.| ++.||.+..+..++.. ..
T Consensus 346 ~L~~~L~~~-G~~v~~~~--t~t~lv~vdl~~--------------~g~~~~~~~~~L-~~~GI~v~~~~~p~d~-~p-- 404 (490)
T 2a7v_A 346 AMADALLER-GYSLVSGG--TDNHLVLVDLRP--------------KGLDGARAERVL-ELVSITANKNTCPGDR-SA-- 404 (490)
T ss_dssp HHHHHHHHT-TCEEGGGS--CSSSEEEEECTT--------------TTCCHHHHHHHH-HHTTEECEEECCTTCC-CS--
T ss_pred HHHHHHHHc-CcEEecCC--CCCeEEEEEeCC--------------CCCCHHHHHHHH-HhCCeEEecCccCCCC-CC--
Confidence 999999886 88887531 122344433322 245677888888 5579999876544311 00
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~~ 523 (625)
..++.+||+.. ...+++|+++++++|.+++...
T Consensus 405 ---------------------~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 405 ---------------------ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp ---------------------SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 02477999763 3468999999999999987654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=229.57 Aligned_cols=351 Identities=14% Similarity=0.039 Sum_probs=219.1
Q ss_pred eccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 043646 80 YADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQE 158 (625)
Q Consensus 80 Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (625)
|+|.+... +.++.+.+++.+.+...+ +.. .....++++.+++++|.+ .++++++|+ +++..++.
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~~~~~sGt-~al~~al~ 68 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHGQ-------YIL----GPEVTELEDRLADFVGAK---YCISCANGT-DALQIVQM 68 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHCC-------CSS----CHHHHHHHHHHHHHHTCS---EEEEESCHH-HHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHhcCC-------ccC----ChHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHH
Confidence 56655554 445678888877663211 111 124677999999999985 578885555 45666666
Q ss_pred HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC-CCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 159 VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN-GLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++ +++||+ |+++..+|+++...++..|++++.++++++ +.+|+++|+++++ +++++|
T Consensus 69 ~~~--------------~~~gd~--Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v 127 (367)
T 3nyt_A 69 ALG--------------VGPGDE--VITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT-----PRTKAI 127 (367)
T ss_dssp HTT--------------CCTTCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC-----TTEEEE
T ss_pred HhC--------------CCCcCE--EEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcC-----cCCcEE
Confidence 653 468885 999999999999999999999999999875 7899999999886 578887
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcC--CCCCCCCCCceEEEEeccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLAT--HKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~--hK~lggp~g~G~l~v~~~~ 315 (625)
+ ++|+||...|+++|.++|+++|+++|+|++|+.|.. .+.+.....+ |++++|+ ||++++++..|+++.++..
T Consensus 128 ~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~ 202 (367)
T 3nyt_A 128 I---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDE 202 (367)
T ss_dssp C---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHH
T ss_pred E---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCe-ECCeeccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHH
Confidence 7 778999999999999999999999999999997765 2322221112 9999985 8999864545777775432
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
. .+.+.+...+|....+ .. ....+.....++.+. +++.. ....+.+.++.+++++++.+.|
T Consensus 203 l-~~~~~~~~~~g~~~~~-----------~~-~~~g~~~~~~~~~aa--~~~~~----l~~~~~~~~~~~~~~~~~~~~L 263 (367)
T 3nyt_A 203 L-ATAIRQIARHGQDRRY-----------HH-IRVGVNSRLDTLQAA--ILLPK----LEIFEEEIALRQKVAAEYDLSL 263 (367)
T ss_dssp H-HHHHHHHTBTTEEETT-----------EE-CSCCCBCCCCHHHHH--HHHHH----HHTHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCCCcCc-----------ee-eccCcCCCccHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112222222221000 00 000111112222221 11111 1234666777888889999999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh-c-CC
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL-A-FD 473 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l-~-~~ 473 (625)
.++ ++.+.............|.+... +...+.+.|.+ .||.++.+..+.......+. . ..
T Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~~~ 325 (367)
T 3nyt_A 264 KQV-GIGTPFIEVNNISVYAQYTVRMD----------------NRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEKAK 325 (367)
T ss_dssp HHT-TCCCCCCCTTEECCCSSEEEECS----------------SHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTTCC
T ss_pred ccC-CeeccCCCCCCceeeEEEEEEeC----------------CHHHHHHHHHH-CCCceeccCCCccccChhhhccCCC
Confidence 877 44443221111111111222111 25678888855 69999877532211001110 0 00
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
-+.+.++ ..+.+|++++..+|++|+++++++|++.
T Consensus 326 ~~~~~~~-----------~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 326 LPVGDKA-----------ATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CHHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ChHHHHH-----------HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 0111111 1378999999999999999999999854
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=228.98 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH-
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR- 199 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~- 199 (625)
....++++.+++++|.+ + .++++ +|+ +++..++. + +++||+ |+++.+.|+++...+.
T Consensus 67 p~~~~l~~~la~~~g~~-~-~i~~~-sG~-~ai~~~~~-l---------------~~~gd~--Vl~~~~~y~~~~~~~~~ 124 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK-Y-CLAFA-SGL-AATVTITH-L---------------LKAGDQ--IICMDDVYGGTNRYFRQ 124 (403)
T ss_dssp HHHHHHHHHHHHHHTCS-E-EEEES-CHH-HHHHHHHT-T---------------SCTTCE--EEEESSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCC-c-EEEEC-CHH-HHHHHHHH-H---------------hCCCCE--EEEeCCCcchHHHHHHH
Confidence 34677999999999986 3 67776 786 67877766 5 478885 9999999998766553
Q ss_pred ---HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcC-CEEEEeccCcCC
Q 043646 200 ---QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYG-GFACFDFAASGP 275 (625)
Q Consensus 200 ---~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g-~~vivD~A~~~g 275 (625)
..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|+++| +++++|++++.+
T Consensus 125 ~~~~~G~~v~~v~~~-----d~~~l~~~i~-----~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~ 194 (403)
T 3cog_A 125 VASEFGLKISFVDCS-----KIKLLEAAIT-----PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194 (403)
T ss_dssp TGGGGTCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCT
T ss_pred HHHHcCCEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccc
Confidence 469999999875 8999999887 57999999999999999999999999999999 999999999887
Q ss_pred CccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cc
Q 043646 276 YVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-AL 315 (625)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~ 315 (625)
.....+. + ++|+++.|+||++++|++ .|++++++ ++
T Consensus 195 ~~~~~~~-~---~~div~~S~sK~~~g~~~~~~G~v~~~~~~l 233 (403)
T 3cog_A 195 YFQRPLA-L---GADISMYSATKYMNGHSDVVMGLVSVNCESL 233 (403)
T ss_dssp TTCCTTT-T---TCSEEEEETTTTTTCSSCCCCEEEEECCHHH
T ss_pred ccCCccc-c---CCeEEEEcChhhccCCCCCeEEEEEECcHHH
Confidence 6432222 2 789999999999999886 49999864 54
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=226.48 Aligned_cols=335 Identities=13% Similarity=0.050 Sum_probs=215.7
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|.-.+-..+.+....+.+.... .. .+.+++......+++++.+++++|++ + .++| ++| +++++.++
T Consensus 47 pi~~s~t~~~~~~~~~~~~~~~~~-----~~---~~~y~r~~~p~~~~le~~lA~l~g~~-~-~i~~-ssG-t~Ai~~al 114 (415)
T 2fq6_A 47 VIQRASSLVFDSVEAKKHATRNRA-----NG---ELFYGRRGTLTHFSLQQAMCELEGGA-G-CVLF-PCG-AAAVANSI 114 (415)
T ss_dssp CBCCCSCBCCSSHHHHHHHHHTTT-----TT---SCCCTTTCCHHHHHHHHHHHHHHTCS-E-EEEE-SSH-HHHHHHHH
T ss_pred CeecccceeeCCHHHHHHhhcccc-----CC---CccccCCCCchHHHHHHHHHHHhCCC-e-EEEe-CCH-HHHHHHHH
Confidence 467666655555444333332110 00 12233334456788999999999985 2 4555 466 56677776
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKR 233 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~ 233 (625)
.++ +++||+ |+++...|+++...+. ..|++++.++.+ |+++|+++|+ ++
T Consensus 115 ~~l---------------~~~Gd~--Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~-----~~ 167 (415)
T 2fq6_A 115 LAF---------------IEQGDH--VLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ-----PN 167 (415)
T ss_dssp HTT---------------CCTTCE--EEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCC-----TT
T ss_pred HHH---------------hCCCCE--EEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhc-----cC
Confidence 655 578885 9999999999876663 369999999764 7889998887 57
Q ss_pred CeEEEEecccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEE
Q 043646 234 PMLGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGIL 309 (625)
Q Consensus 234 ~~lv~~~~~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l 309 (625)
|++|++++++||||.+.|+++|+++||+ +|+++++|++++.++....+ .+ ++|++++|+||+++++++ .|++
T Consensus 168 tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~---g~Div~~S~sK~lg~~g~~~~G~l 243 (415)
T 2fq6_A 168 TKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DF---GIDVSIQAATKYLVGHSDAMIGTA 243 (415)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GG---TCSEEEEETTTTTTCSSSCCCEEE
T ss_pred CcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-cc---CCeEEEEeCccccCCCCCceEEEE
Confidence 9999999999999999999999999999 99999999999866432222 23 789999999999997764 5898
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHH-HH-HHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIV-QM-IRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~-~~-~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.++++. +.+.. .+...|+ .+.. .. +..+++. .....++...
T Consensus 244 ~~~~~~~--~~l~~--------------------------~~~~~G~~~~~~~a~~~~~~l~~-------l~~r~~~~~~ 288 (415)
T 2fq6_A 244 VCNARCW--EQLRE--------------------------NAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHE 288 (415)
T ss_dssp EECTTTH--HHHHH--------------------------HHHHTTCCCCHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred EeCHHHH--HHHHH--------------------------HHHhcCCCCCHHHHHHHHhhhhH-------HHHHHHHHHH
Confidence 8887652 11100 0011122 2211 11 1112222 1223344455
Q ss_pred HHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 387 YIESALGRILPNQNIQ-VLGNTS-------------VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
++..+.+.|.+.|.+. +..|.- ...+++++|.+..... ......+.+.| +.++
T Consensus 289 n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~------------~~~~~~~l~~l-~~~~ 355 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN------------NEELANYLDNF-SLFS 355 (415)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC------------HHHHHHHHTTC-SSCE
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC------------HHHHHHHHHhC-CcCe
Confidence 6777888887777664 323210 1246788888743100 00123344444 4567
Q ss_pred eeeecCCCCCc-----hh--hHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 453 IQARGGCACAG-----PY--GHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 453 I~v~~G~~~~~-----~~--~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
|.++.|..|+. |. .+.+.. ...|+.++.||||++..+++++++.+.++|+.
T Consensus 356 ~a~s~G~~~s~~~~~~p~~~s~~~~~---------------~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 356 MAYSWGGYESLILANQPEHIAAIRPQ---------------GEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECSCCCSSSCEEEEECHHHHHTTCTT---------------CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred EeccCCCCceeEEecCCCccccccch---------------hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 88899988873 21 111100 01233468999999999999999999999874
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-23 Score=220.00 Aligned_cols=318 Identities=13% Similarity=0.079 Sum_probs=209.3
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.++. ++.++.+.+++.+.+... .+... .+ .....+++++++++++|.+.+ ++++| +|+++
T Consensus 45 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~~ 115 (395)
T 1vef_A 45 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQ-TL-----PTPMRGEFYRTLTAILPPELN-RVFPV-NSGTE 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCT-TS-----CCHHHHHHHHHHHHTSCTTEE-EEEEE-SSHHH
T ss_pred CEEEEccCccccccCCCCCHHHHHHHHHHHHhC-CCCcc-cc-----CCHHHHHHHHHHHHhcCCCcC-EEEEc-CcHHH
Confidence 457887543 567889999998887532 11111 11 234678899999999987655 89998 56666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC-chhHHHHHHcCCe------------EEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH-HSNLLSWRQSLAE------------VVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h-~s~~~~~~~~G~~------------vv~v~~~~~~~ld~ 218 (625)
++..++.++. .+.++++ |++.+..| .+....++..|++ +..++. .|+
T Consensus 116 a~~~al~~~~-------------~~~~~~~--vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~ 175 (395)
T 1vef_A 116 ANEAALKFAR-------------AHTGRKK--FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDV 175 (395)
T ss_dssp HHHHHHHHHH-------------HHHSCCE--EEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCH
T ss_pred HHHHHHHHHH-------------HHhCCCe--EEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcH
Confidence 7777766541 0135664 55555554 4454455555664 333432 489
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc----ccCCCCCCCCC
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK----INLRSRNIDGY 289 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~----id~~~~~~~~~ 289 (625)
++|+++++ +++++|++++++|+||.+.| +++|+++|++||+++|+|++++ ++... ++.... .+
T Consensus 176 ~~l~~~i~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~---~~ 247 (395)
T 1vef_A 176 EALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGI---VP 247 (395)
T ss_dssp HHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC---CC
T ss_pred HHHHHHhc-----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCC---CC
Confidence 99999987 57899999988999999988 9999999999999999999988 32211 121122 46
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal 367 (625)
|++ |+||+++++.++|++++++++ .+.+.+...+ . ..+++..+ .+.+++
T Consensus 248 d~~--s~sK~~~~g~~~G~~~~~~~~--~~~l~~~~~~------------------------~-~~~~~~~~~~a~~~al 298 (395)
T 1vef_A 248 DIL--TLAKALGGGVPLGVAVMREEV--ARSMPKGGHG------------------------T-TFGGNPLAMAAGVAAI 298 (395)
T ss_dssp SEE--EECGGGGTTSSCEEEEEEHHH--HHTSCTTSSC------------------------C-SSTTCHHHHHHHHHHH
T ss_pred CEE--EEcccccCCCceEEEEehHHH--HhhhccCCcC------------------------C-CcCCCHHHHHHHHHHH
Confidence 877 558999876679999999886 3333321000 0 01122222 223444
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQN--IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g--v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+.+ +. +.+.++.+.+++++.+.|.+++. +.... ..+.++.+.+.. +..++.+
T Consensus 299 ~~~--~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~g~~~~~~~~~-----------------~~~~l~~ 352 (395)
T 1vef_A 299 RYL--ER---TRLWERAAELGPWFMEKLRAIPSPKIREVR----GMGLMVGLELKE-----------------KAAPYIA 352 (395)
T ss_dssp HHH--HH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE----EETTEEEEEESS-----------------CSHHHHH
T ss_pred HHH--Hh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEE----EEEEEEEEEEcC-----------------hHHHHHH
Confidence 443 21 34567788888899999877632 22111 123455554421 1357888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.|.+++||.++++. ++++||+++++++++|+++++++|++++
T Consensus 353 ~l~~~~gi~v~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 353 RLEKEHRVLALQAG---------------------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHCEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCC---------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 88635799998641 3789999999999999999999999865
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=217.93 Aligned_cols=316 Identities=12% Similarity=0.051 Sum_probs=209.1
Q ss_pred eEeccCCCCCc------chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASGR------SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~~------~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.+++.+ .++.+.+++.+.+... .++.. .|. .....++++++++++|.+ + ++++| +|+++
T Consensus 28 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~y~-----~~~~~~l~~~la~~~g~~-~-~v~~~-~g~t~ 97 (375)
T 2eh6_A 28 KEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL-LHVSN-LYE-----NPWQEELAHKLVKHFWTE-G-KVFFA-NSGTE 97 (375)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC-SCCCT-TBC-----CHHHHHHHHHHHHTSSSC-E-EEEEE-SSHHH
T ss_pred CEEEEcCCcccccccCCCCHHHHHHHHHHHHhc-cccCc-ccC-----CHHHHHHHHHHHhhcCCC-C-eEEEe-CchHH
Confidence 46888775443 6789999998877432 23222 121 123567889999999983 4 79998 66777
Q ss_pred HHHHHHHHhcccccchhhhhhhhcc---CCC-CceEEEEcCCCCchhHHHHHHcCCe-------------EEEEecCCCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSL---RDE-ERWVVFLGPYEHHSNLLSWRQSLAE-------------VVEIGLDDNG 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l---~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~-------------vv~v~~~~~~ 214 (625)
++..++.++.. .. ++| |+ |+++.+.|+.....+...+.. +..++.
T Consensus 98 a~~~~~~~~~~------------~~~~~~~g~~~--vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (375)
T 2eh6_A 98 SVEAAIKLARK------------YWRDKGKNKWK--FISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL---- 159 (375)
T ss_dssp HHHHHHHHHHH------------HHHHTTCCCCE--EEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT----
T ss_pred HHHHHHHHHHH------------HhccCCCCCCE--EEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC----
Confidence 77777654210 02 466 64 777777766554444433221 444443
Q ss_pred CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCC
Q 043646 215 LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNID 287 (625)
Q Consensus 215 ~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~ 287 (625)
.|+++|+++++ +++++|++++++|+||.+.| +++|.++|++||+++|+|++++ ++..+ .++..++.
T Consensus 160 -~d~~~l~~~l~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~- 232 (375)
T 2eh6_A 160 -NDIDSVYKLLD-----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNL- 232 (375)
T ss_dssp -TCHHHHHTTCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-
T ss_pred -chHHHHHHHhc-----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCC-
Confidence 48999998887 57999999999999999988 9999999999999999999998 54432 23333311
Q ss_pred CCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHH
Q 043646 288 GYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAA 366 (625)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aa 366 (625)
.+|++++| |+++++.++|++++++++ .+.+.+...+ ...+++++.+.+ .++
T Consensus 233 ~~d~~s~S--K~~~~g~~~G~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~ 284 (375)
T 2eh6_A 233 KPDVIALA--KGLGGGVPIGAILAREEV--AQSFTPGSHG------------------------STFGGNPLACRAGTVV 284 (375)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEEEHHH--HTTCCTTSCC------------------------CSSTTCHHHHHHHHHH
T ss_pred CCCEEEEc--ccccCCCCeEEEEEcHHH--HhhhcCCCCC------------------------CCCCCCHHHHHHHHHH
Confidence 37888766 999877779999999887 3444332111 011333333322 223
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 367 LAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 367 l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
++.. + .+.++.+++++++.+.|.+++...+. + .+.++.+.+ +. +..++++.
T Consensus 285 l~~~--~-----~~~~~~~~~~~~l~~~L~~~~~~~~~-~----~g~~~~~~~-~~----------------~~~~~~~~ 335 (375)
T 2eh6_A 285 VDEV--E-----KLLPHVREVGNYFKEKLKELGKGKVK-G----RGLMLGLEL-ER----------------ECKDYVLK 335 (375)
T ss_dssp HHHH--H-----HHHHHHHHHHHHHHHHHHHTTSSEEE-E----ETTEEEEEC-SS----------------CCHHHHHH
T ss_pred HHHH--H-----HHHHHHHHHHHHHHHHHHHHhcCCce-E----EEEEEEEEE-cC----------------cHHHHHHH
Confidence 3322 1 56777888889999988776542221 1 234444433 21 14578888
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
|.+ +||.++++. ++++||++++.++++|+++++++|+++
T Consensus 336 l~~-~gi~~~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 336 ALE-KGLLINCTA---------------------------------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHH-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHH-CCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 865 799998531 378999999999999999999999875
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=227.59 Aligned_cols=346 Identities=8% Similarity=0.002 Sum_probs=223.0
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|+.+.+++.+.+... ....|....+..++.+++.+++++.+|.+ ++ +|++| +|+++++..++.++
T Consensus 71 ~~~~v~~a~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~v~~t-~G~~~al~~~~~~l------ 138 (447)
T 3b46_A 71 PPQFAIKEAQKALDIP----MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAE-NVTVT-TGANEGILSCLMGL------ 138 (447)
T ss_dssp CCHHHHHHHHHHTTSG----GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGG-GEEEE-SHHHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHhCc----CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEe-CCHHHHHHHHHHHH------
Confidence 5688999998877531 11112111123445555555555555653 34 89998 78889899988877
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC------------CCCCHHHHHHHHHHhhhCCCC
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN------------GLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~------------~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+++||+ |++..+.|+++...++..|++++.++++.+ +.+|+++|+++++ +++
T Consensus 139 ---------~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~ 202 (447)
T 3b46_A 139 ---------LNAGDE--VIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT-----SKT 202 (447)
T ss_dssp ---------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC-----TTE
T ss_pred ---------cCCCCE--EEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc-----cCC
Confidence 578885 888889999998888889999999998643 4689999999886 579
Q ss_pred eEEEEecccCcccccc---CHHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCC--CCCCCcEEEEcCCCCCCCCC-C
Q 043646 235 MLGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGPYV---KINLRSR--NIDGYDAIFLATHKFLGGPG-T 305 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~---~l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~--~~~~~D~v~~S~hK~lggp~-g 305 (625)
++|++++++||||.+. ++++|+++|++||+++|+|++++.... ...+..+ +..+.|+++.|+||+|+.|+ .
T Consensus 203 ~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~r 282 (447)
T 3b46_A 203 KAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWR 282 (447)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSC
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchh
Confidence 9999999999999996 488999999999999999999875321 1122111 01257899999999997443 3
Q ss_pred ceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHH
Q 043646 306 PGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQ 383 (625)
Q Consensus 306 ~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~ 383 (625)
+|++++ ++++.+ .+.. .......+.++..+. +.++++... .....+.+.++
T Consensus 283 iG~~~~~~~~l~~--~l~~------------------------~~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~~~~~~~ 335 (447)
T 3b46_A 283 IGWVLSLNAELLS--YAAK------------------------AHTRICFASPSPLQEACANSINDAL-KIGYFEKMRQE 335 (447)
T ss_dssp CEEEECSCHHHHH--HHHH------------------------HHHHHTSSCCHHHHHHHHHHHHHHH-HHTHHHHHHHH
T ss_pred hEEEEeCCHHHHH--HHHH------------------------HHhhccCCCChHHHHHHHHHHhCCc-chHHHHHHHHH
Confidence 899999 777621 1100 011111222333322 223333221 12235667788
Q ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCc-cccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 384 EDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPE-NMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 384 ~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
.+.+++++.+.|.++ ++++..+. .+.+.+.-.+....... .....-+...+..++++.|.+++||.+.+|..|.
T Consensus 336 ~~~~~~~l~~~L~~~-g~~~~~~~----~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 410 (447)
T 3b46_A 336 YINKFKIFTSIFDEL-GLPYTAPE----GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFY 410 (447)
T ss_dssp HHHHHHHHHHHHHHH-TCCEECCS----BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHC-CCeecCCC----eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhC
Confidence 888899999999876 67766542 34444443332100000 0000000012345788878766899999887664
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
.+.... ..++++||+++. ++++++++++.|++
T Consensus 411 ~~~~~~----------------------~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 411 IKEHEK----------------------AAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp CGGGGG----------------------GGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred CCCccC----------------------CCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 221100 014899999973 89999999999876
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=227.63 Aligned_cols=328 Identities=14% Similarity=0.095 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH-
Q 043646 120 TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW- 198 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (625)
....+++++++++++|.+ . .++++ +| ++++..++.++ +++||+ |+++..+|+++...|
T Consensus 57 ~~~~~~l~~~la~~~g~~-~-~v~~~-sG-t~A~~~~l~~~---------------~~~gd~--vi~~~~~~~~~~~~~~ 115 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK-A-ALATA-SG-HAAQFLALTTL---------------AQAGDN--IVSTPNLYGGTFNQFK 115 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTCE--EEECSCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC-c-eEEec-CH-HHHHHHHHHHH---------------hCCCCE--EEEeCCCchHHHHHHH
Confidence 356788999999999986 2 45554 77 66677776665 467885 999999999998887
Q ss_pred ---HHcCCeEEEE-ecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccC-c
Q 043646 199 ---RQSLAEVVEI-GLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA-S 273 (625)
Q Consensus 199 ---~~~G~~vv~v-~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~-~ 273 (625)
+..|++++.+ +.+ |+++|+++|+ +++++|++++++|+||.+.|+++|+++|+++|+++|+|+++ +
T Consensus 116 ~~~~~~g~~~~~~~~~~-----d~~~l~~~i~-----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 116 VTLKRLGIEVRFTSREE-----RPEEFLALTD-----EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp THHHHTTCEEEECCTTC-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred HHHHHcCCEEEEECCCC-----CHHHHHHhhc-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc
Confidence 5679999988 654 8999999987 58999999999999999999999999999999999999999 8
Q ss_pred CCCccccCCCCCCCCCcEEEEcCCCCCCCCCC-ceEEEEec-c--c-c-ccCCCCCcccCCceEEeeccccccccccccc
Q 043646 274 GPYVKINLRSRNIDGYDAIFLATHKFLGGPGT-PGILLISK-A--L-Y-QLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 274 ~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~l~v~~-~--~-~-~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
.|+....+ .. ++|++++|+||++++|++ +|++++.+ + + . .+..+.+...|+....+...+. ...+..
T Consensus 186 ~g~~~~~~-~~---~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~--~~~~~~- 258 (421)
T 2ctz_A 186 GGYLLRPL-AW---GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG--ELAFIV- 258 (421)
T ss_dssp GGTSCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHG--GGHHHH-
T ss_pred ccccCCcc-cc---CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcc--hhHHHH-
Confidence 77532112 22 789999999999998874 77777752 2 1 0 0011223222322211110000 000000
Q ss_pred hhhhhc----CC-ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeC-CCC-------------
Q 043646 348 IEEREN----GG-TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG-NTS------------- 408 (625)
Q Consensus 348 ~~~~~~----~g-t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~-~~~------------- 408 (625)
..+++ .| ..+.... ++... .........++..++++++.+.|.++|+++++. |..
T Consensus 259 -~~r~~~~~~~g~~~~~~~a---~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~ 332 (421)
T 2ctz_A 259 -KARVDGLRDQGQALGPFEA---WVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYF 332 (421)
T ss_dssp -HHHHTHHHHHCCCCCHHHH---HHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHH
T ss_pred -HHHHHHHHhcCCCCCHHHH---HHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhc
Confidence 11111 12 1121111 11111 111123334455578999999999999998763 211
Q ss_pred -CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHH
Q 043646 409 -VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAI 484 (625)
Q Consensus 409 -~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~ 484 (625)
..++++++|.+.... -....+.+.| +.++|.++.|..|+. |....+..+..+...+
T Consensus 333 ~~~~g~ivsf~l~~~~--------------~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~----- 392 (421)
T 2ctz_A 333 KGKPGAVLTFGLKGGY--------------EAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQ----- 392 (421)
T ss_dssp TTCCCSEEEEEETTHH--------------HHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHH-----
T ss_pred cCCCceEEEEEeCCCH--------------HHHHHHHHhC-CcceecccCCCCCceeeCCcccccccCCHHHHHh-----
Confidence 246789999885310 0122344444 335667777754432 1111111222211111
Q ss_pred HhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 485 QKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 485 ~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.|+.++.||+|++.+ |++.+++.|++.
T Consensus 393 ----~g~~~~~vRlS~g~e----~~~~li~~l~~a 419 (421)
T 2ctz_A 393 ----AGVSPEMVRLSVGLE----HVEDLKAELKEA 419 (421)
T ss_dssp ----HTCCTTEEEEECCSS----CHHHHHHHHHHH
T ss_pred ----cCCCCCeEEEEeCCC----CHHHHHHHHHHH
Confidence 244569999999875 555566655543
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=225.04 Aligned_cols=349 Identities=11% Similarity=0.015 Sum_probs=223.6
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.|..+++++.+.+....+ .....|....+..++.+++.+++.+..|. +++ +|++| +|+++++..++.++
T Consensus 107 ~p~~~~~~a~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l------ 177 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPG-RATGAYSHSQGIHGLRDAIASGIASRDGFPANAD-DIFLT-DGASPGVHLMMQLL------ 177 (500)
T ss_dssp SCHHHHHHHHHHHTTSTT-SCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG-GEEEE-SSSHHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHcCCC-CcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc-cEEEc-CCHHHHHHHHHHHH------
Confidence 455566666666654211 01222333334556667777777766664 344 89998 78888899988887
Q ss_pred hhhhhhhhcc-CCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhh-CCCCeEEEEecc
Q 043646 167 IMRDKLITSL-RDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKA-AKRPMLGSFSAC 242 (625)
Q Consensus 167 ~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~ 242 (625)
+ ++||+ |+++.+.|+++...++..|++++.++++++ +.+|+++|+++|++... +.++++|+++++
T Consensus 178 ---------~~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p 246 (500)
T 3tcm_A 178 ---------IRNEKDG--ILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINP 246 (500)
T ss_dssp ---------CCSTTEE--EEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred ---------cCCCCCE--EEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECC
Confidence 3 57775 999999999999999999999999998864 48999999999985221 126899999999
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-----cccCC----CCC--CCCCc-EEEEcCCCCC-CCCC-C
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-----KINLR----SRN--IDGYD-AIFLATHKFL-GGPG-T 305 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-----~id~~----~~~--~~~~D-~v~~S~hK~l-ggp~-g 305 (625)
+||||.+.+ +++|+++|++||+++++|++++.... ..++. .++ .+... +++.|++|.| |.|+ .
T Consensus 247 ~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 326 (500)
T 3tcm_A 247 GNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKR 326 (500)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGC
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccc
Confidence 999999977 56677779999999999999775322 11111 010 01222 5566999998 4232 2
Q ss_pred ceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHH----------HH
Q 043646 306 PGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALA----------FW 370 (625)
Q Consensus 306 ~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~----------~~ 370 (625)
+|++++ ++++.. .+. ..+....+++..+... .++. .+
T Consensus 327 ~G~~~~~~~~~~~~~--~l~--------------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 378 (500)
T 3tcm_A 327 GGYFEITGFSAPVRE--QIY--------------------------KIASVNLCSNITGQILASLVMNPPKASDESYASY 378 (500)
T ss_dssp CEEEEEESCCTTHHH--HHH--------------------------HHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHH
T ss_pred eEEEEEeCCCHHHHH--HHH--------------------------HHHhcccCCCHHHHHHHHHHhcCccccchhHHHH
Confidence 699988 555521 110 0001122333333222 2221 01
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH-HHHHHhhh
Q 043646 371 VKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP-FVATLFND 449 (625)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~-~v~~~L~~ 449 (625)
. ...+.+.++.+++++++.+.|.++|++++..+ .++++.|........ .....+..++... .++..+++
T Consensus 379 ~---~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~~~lp~~---~~~~~~~~g~~~~~~~~~~ll~ 448 (500)
T 3tcm_A 379 K---AEKDGILASLARRAKALEHAFNKLEGITCNEA----EGAMYVFPQICLPQK---AIEAAKAANKAPDAFYALRLLE 448 (500)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBTTEECCEECCCHH---HHHHHHHHTSCHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHhcCCCcEEecC----CeEEEEeeeecCchh---hHHHHHhcCCCcHHHHHHHHHH
Confidence 1 11346677788889999999999999998765 346666532211000 0000000011222 23444446
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++||.+.+|..|+.+. .++++|++++ ++++++++++++|++++++.
T Consensus 449 ~~gI~v~pg~~f~~~~--------------------------g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 449 STGIVVVPGSGFGQVP--------------------------GTWHFRCTIL--PQEDKIPAVISRFTVFHEAF 494 (500)
T ss_dssp HHCEECEESTTTCCCT--------------------------TCCBEEEESC--SCTTTHHHHHHHHHHHHHHH
T ss_pred HCCEEEEeCcccCCCC--------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Confidence 6899999999886321 2478999998 78899999999999987664
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=237.69 Aligned_cols=320 Identities=12% Similarity=0.084 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-HHH
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-WRQ 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~ 200 (625)
...++++.+|+++|++. .++++ +|+++++..++.++ +++||+ |+++...|.|+..+ ++.
T Consensus 174 ~i~e~e~~lA~~~gae~--~i~v~-nGtt~an~~ai~al---------------~~pGD~--VLv~~~~H~S~~~~~~~l 233 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK--TYFVL-GGSSNANNTVTSAL---------------VSNGDL--VLFDRNNHKSVYNSALAM 233 (730)
T ss_dssp HHHHHHHHHHHHTTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCc--EEEEC-CHHHHHHHHHHHHh---------------cCCCCE--EEEcCCchHHHHHHHHHH
Confidence 56889999999999863 45565 89988888888877 578985 99999999999988 788
Q ss_pred cCCeEEEEecCCC-----CCCCHHHH-----HHHHHHh-hh---CCCC-eEEEEecccCccccccCHHHHHHHHHHcCCE
Q 043646 201 SLAEVVEIGLDDN-----GLLDIEAL-----RSQLELY-KA---AKRP-MLGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (625)
Q Consensus 201 ~G~~vv~v~~~~~-----~~ld~~~L-----~~~l~~~-~~---~~~~-~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~ 265 (625)
.|++++.++.+.+ +.+|+++| +++|++. .. ..++ ++++++++ |++|.+.|+++|+++||++|++
T Consensus 234 ~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~ 312 (730)
T 1c4k_A 234 AGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDY 312 (730)
T ss_dssp TCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSE
T ss_pred CCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCe
Confidence 8999999876432 34688888 8887631 00 1123 89999987 6899999999999999999999
Q ss_pred EEEeccCcCCC--c-------cccCCCCCCCCCc----EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEE
Q 043646 266 ACFDFAASGPY--V-------KINLRSRNIDGYD----AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVN 332 (625)
Q Consensus 266 vivD~A~~~g~--~-------~id~~~~~~~~~D----~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~ 332 (625)
+++|+||+.+. . +++...+ ++| +++.|+||+++||.+.|+++++++. +.... ..+
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~~---g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~--l~g~~------~~i- 380 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDDL---GPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH--IKGQL------RYC- 380 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCC---CTTSCEEEEEECHHHHSSCCTTCEEEEEECGG--GTTST------TCC-
T ss_pred EEEEcccccccccCcccCCcCccccccc---CCCCCCEEEEECCCCCCCCCCCEEEEEecchh--hcCcc------ccc-
Confidence 99999987531 1 1222222 667 9999999999999887999999876 21100 000
Q ss_pred eeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhh-cCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCC
Q 043646 333 YVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEY-IGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTS 408 (625)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~-~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~ 408 (625)
+...+......+..++|+...+++ ++++++ .. .| +...++...+++++++.|.+ +++++++++..
T Consensus 381 --------~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l--~~~~g-~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~ 449 (730)
T 1c4k_A 381 --------DHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ--EGEAG-RKLWHDLLITTIEARKKLIKAGSMFRPFVPPV 449 (730)
T ss_dssp --------CHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH--SHHHH-HHHHHHHHHHHHHHHHHHHHTTCSSEESSCSE
T ss_pred --------CHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH--Hhhhh-HHHHHHHHHHHHHHHHHHhhhCCCeEEccccc
Confidence 000111112234566777655443 344443 22 23 34456788889999999987 78999887631
Q ss_pred C-------------------------------C-C-c------ce-EEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 409 V-------------------------------K-R-Q------AI-LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 409 ~-------------------------------~-~-~------~i-~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
. . . . |+ +++.. ++.+.. .+.-+..++++.++.+.|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~-pg~~~~---~g~~~~~g~~~~~l~~~L~ 525 (730)
T 1c4k_A 450 VNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTT-PGINPE---TGDYEDFGVPATIVANYLR 525 (730)
T ss_dssp ETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEEC-SSEETT---TTEECSSCCCHHHHHHHHH
T ss_pred cccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEe-CCcccc---cccccccCCCHHHHHHHHH
Confidence 0 0 0 1 11 33333 110000 0000224567889999996
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+ +||.+... ..+.+|++++..+|++|+++++++|+++.+..
T Consensus 526 e-~GI~v~~~---------------------------------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 526 D-HGIIPEKS---------------------------------DLNSILFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp H-TTCCCSEE---------------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred H-CCcEEEEC---------------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6 59988621 13789999999999999999999999987654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=214.18 Aligned_cols=325 Identities=12% Similarity=0.092 Sum_probs=209.7
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+......... ......+++++++++++| .+ +++|+++ .++
T Consensus 36 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g--~~-~v~~~~~-gt~ 104 (392)
T 3ruy_A 36 NRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTN--KE-MVLPMNT-GAE 104 (392)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHT--CS-EEEEESS-HHH
T ss_pred CEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcC--CC-EEEEeCc-HHH
Confidence 3488876532 25789999999888543211111 123456788999999998 33 7899854 555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~v~~~~~~~ld~ 218 (625)
++..++.++... .....+..+++. .|++....|++....+...+. .+..++.+ |+
T Consensus 105 a~~~al~~~~~~------~~~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~ 172 (392)
T 3ruy_A 105 AVETAIKTARRW------AYDVKKVEANRA-EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DL 172 (392)
T ss_dssp HHHHHHHHHHHH------HHHTSCCCTTCC-EEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CH
T ss_pred HHHHHHHHHHHh------hhhccCCCCCCc-EEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cH
Confidence 455555543100 000001113332 478877777766555443322 25555543 89
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDA 291 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~ 291 (625)
++|+++++ +++++|++++++||||.+.| +++|.++|++||+++|+|++++ ++... ......+ ...|+
T Consensus 173 ~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d~ 246 (392)
T 3ruy_A 173 EALKAAIT-----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDN-VTPDM 246 (392)
T ss_dssp HHHHHHCC-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE
T ss_pred HHHHHHhc-----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccC-CCCCE
Confidence 99999987 58999999999999999998 9999999999999999999985 33211 1111111 15688
Q ss_pred EEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH--HHHHHHH
Q 043646 292 IFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ--MIRAALA 368 (625)
Q Consensus 292 v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~--~~~aal~ 368 (625)
+++| |++++. ..+|++++++++ .+.+.+...++. .+.+... .+.++++
T Consensus 247 ~~~S--K~l~gG~~~~G~~~~~~~~--~~~~~~~~~~~~-------------------------~~~~~~~~~a~~~~l~ 297 (392)
T 3ruy_A 247 YILG--KALGGGVFPISCAAANRDI--LGVFEPGSHGST-------------------------FGGNPLACAVSIAALE 297 (392)
T ss_dssp EEEC--GGGGTTTSCCEEEEECHHH--HTTCCTTSSCCS-------------------------STTCHHHHHHHHHHHH
T ss_pred EEEc--hhhhCChhhhEEEEECHHH--HhhhccCCcCCC-------------------------CCCCHHHHHHHHHHHH
Confidence 8776 998752 347999998887 334433221110 1222222 2233344
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
.. + .+.+.++.+.+++++.+.|.++ +.+....+ .+.++.+.+ +. +..++.+.
T Consensus 298 ~~--~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~-~~----------------~~~~l~~~ 351 (392)
T 3ruy_A 298 VL--E---EEKLTERSLQLGEKLVGQLKEIDNPMITEVRG----KGLFIGIEL-NE----------------PARPYCEQ 351 (392)
T ss_dssp HH--H---HTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE----ETTEEEEEE-SS----------------CSHHHHHH
T ss_pred HH--H---hhhHHHHHHHHHHHHHHHHHHhcCCCceEEEe----eeeEEEEEE-cc----------------hHHHHHHH
Confidence 33 2 1467778888899999999886 44554433 345666654 21 24578888
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
|. ++||.+++|. ++++||++++.++++|+++++++|++++
T Consensus 352 l~-~~gi~v~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 352 LK-AAGLLCKETH---------------------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp HH-TTTEECCCBT---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HH-HCCcEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 86 4799998642 3889999999999999999999999875
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=225.03 Aligned_cols=344 Identities=12% Similarity=0.058 Sum_probs=217.6
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL----GGGQADAIIFCGAGTT 150 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~----g~~~~~~vift~sGtt 150 (625)
+.+++|..+... +.|+.|.+++.+.+.......+...|..... ..++++.+++++ +.+++ +|+|| +|++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~ia~~~~~~~~~~~~-~i~~t-~G~~ 129 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQG----AKPLRAAIAKTFYGGLGIGDD-DVFVS-DGAK 129 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC----CHHHHHHHHHHHHTTTTCCGG-GEEEE-SCHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC----CHHHHHHHHHHHHccCCCCcc-eEEEC-CChH
Confidence 457788766544 5778999999887753221111111211112 234555555554 77665 89998 7899
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCCCC--CC
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDDNG--LL 216 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~~~--~l 216 (625)
+++..+ ..+ +++||. |+++.+.|+++...++..|+ +++.++++..+ ..
T Consensus 130 ~al~~l-~~l---------------~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (432)
T 3ei9_A 130 CDISRL-QVM---------------FGSNVT--IAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFP 191 (432)
T ss_dssp HHHHHH-HHH---------------HCTTCC--EEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSC
T ss_pred HHHHHH-HHH---------------cCCCCE--EEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcC
Confidence 988875 333 468886 99999999999888887774 68888887533 33
Q ss_pred CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc---cccCCCCC-CCCC
Q 043646 217 DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---KINLRSRN-IDGY 289 (625)
Q Consensus 217 d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~---~id~~~~~-~~~~ 289 (625)
|++ + .+++++|++++++||||.+.+ +++|+++|++||+++|+|++|+.... +..+.... ..+.
T Consensus 192 ~l~---~-------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~ 261 (432)
T 3ei9_A 192 DLS---T-------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEV 261 (432)
T ss_dssp CGG---G-------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGT
T ss_pred Chh---h-------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCe
Confidence 422 1 157899999999999999976 56677779999999999999884321 22222211 1245
Q ss_pred cEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 290 DAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
++++.|++|+||.++ .+|++++++++.. ....+.. ..+.. ......++++..+... +.+
T Consensus 262 ~i~~~S~SK~~g~~G~r~G~~~~~~~~~~-~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~a-~~~ 321 (432)
T 3ei9_A 262 AMETASFSNYAGFTGVRLGWTVIPKKLLY-SDGFPVA-----------------KDFNR-IICTCFNGASNISQAG-ALA 321 (432)
T ss_dssp EEEEEESHHHHCTTTTCCEEEECCTTCBC-TTSCBHH-----------------HHHHH-HHHHSCCCSCHHHHHH-HHH
T ss_pred EEEEecchhccCCcccceEEEEEChHHhh-cchHHHH-----------------HHHHH-HhccccCCCCHHHHHH-HHH
Confidence 688999999997443 4899998887620 0000000 00000 0111123333333221 122
Q ss_pred HHH-HhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWV-KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~-~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
.+. ......+.+.++.+.+++++.+.|.++ ++++..+. . +.+.+...++ .+..++++.|
T Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~-~~~~~~~~~~---------------~~~~~~~~~l 381 (432)
T 3ei9_A 322 CLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGK---N-APYVWVHFPN---------------QSSWDVFAEI 381 (432)
T ss_dssp HSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECS---S-SSEEEEECTT---------------SCHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCC---c-ceEEEEECCC---------------CCHHHHHHHH
Confidence 210 011224567788888899999999877 77776542 2 3333333332 2356777877
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+++||.+++|..|+ +. .++++|||+ ..+++++++.++.|++-...
T Consensus 382 l~~~gv~v~~g~~f~-~~--------------------------~~~~iRis~--~~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 382 LEKTHVVTTPGSGFG-PG--------------------------GEGFVRVSA--FGHRENILEACRRFKQLYKH 427 (432)
T ss_dssp HHHHCEECEEGGGGC-GG--------------------------GTTEEEEEC--CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHCCEEEeCchHhC-CC--------------------------CCCEEEEEe--cCCHHHHHHHHHHHHHHhhh
Confidence 777899999998775 21 248999997 45999999999999876443
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=216.41 Aligned_cols=308 Identities=16% Similarity=0.102 Sum_probs=207.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++.+++++|.+ .++++++| ++++..++.++ +++||+ |+++...|+++
T Consensus 60 y~r~~~~~~~~l~~~la~~~g~~---~~~~~~sG-t~A~~~al~~~---------------~~~gd~--Vi~~~~~y~~~ 118 (392)
T 3qhx_A 60 YARTGNPTRTALEAALAAVEDAA---FGRAFSSG-MAAADCALRAM---------------LRPGDH--VVIPDDAYGGT 118 (392)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCS---EEEEESSH-HHHHHHHHHHH---------------CCTTCE--EEEETTCCHHH
T ss_pred ccCCCChHHHHHHHHHHHHhCCC---cEEEECCH-HHHHHHHHHHH---------------hCCCCE--EEEeCCCcchH
Confidence 44444566788999999999985 46777566 56677776665 467885 99999999988
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+ +..|++++.++.+ |+++|+++++ +++++|++++++|+||.+.|+++|+++|++||+++|+|+
T Consensus 119 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~ 188 (392)
T 3qhx_A 119 FRLIDKVFTGWNVEYTPVALA-----DLDAVRAAIR-----PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDN 188 (392)
T ss_dssp HHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhC-----CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEEC
Confidence 7666 4569999999875 8999999987 589999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.+...... .+ ++|+++.|+||+++++++ .|+++.++ ++.. .+..
T Consensus 189 ~~~~~~~~~~~-~~---~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~--~l~~------------------------ 238 (392)
T 3qhx_A 189 TFASPALQQPL-SL---GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQ--SFAF------------------------ 238 (392)
T ss_dssp TTTCTTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHH--HHHH------------------------
T ss_pred CCcccccCChH-Hh---CCcEEEEcCccccCCCCCceEEEEEECcHHHHH--HHHH------------------------
Confidence 99876432222 23 789999999999997653 68888874 4411 1100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcc
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQA 413 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~ 413 (625)
..... ..+++.... .+++..+ + ..+...++..++++++.+.|.+.|.+. +..|.- ...++
T Consensus 239 ~~~~~-g~~~~~~~~-~~~~~~l--~--~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~ 312 (392)
T 3qhx_A 239 LQNGA-GAVPGPFDA-YLTMRGL--K--TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGG 312 (392)
T ss_dssp HHHHH-CCCCCHHHH-HHHHHHH--T--THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred HHHhc-CCCCCHHHH-HHHHhhh--h--HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCce
Confidence 00111 112222111 1111111 1 133444556667888888888888874 333311 11256
Q ss_pred eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 414 ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 414 i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
+++|.+..+. .....+...| +.++|.+..|..|+. |.......+..+ -.|
T Consensus 313 ~~~~~l~~~~--------------~~~~~~~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~------------~~g 365 (392)
T 3qhx_A 313 MVSVRMRAGR--------------TAAEQLCAKT-NIFILAESLGSVESLIEHPSAMTHASTAGS------------QLE 365 (392)
T ss_dssp EEEEEETTCH--------------HHHHHHHHHC-SSSEECSCCCCSSCEEECGGGTSCGGGBTT------------BCC
T ss_pred EEEEEeCCcH--------------HHHHHHHHhC-CCceECCCCCCCCceeeCcccccccccCHH------------HcC
Confidence 7888774310 1234566666 557899988888753 111100011000 134
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
+.++.||||++..+++++++.+.++|
T Consensus 366 ~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 366 VPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 46799999999998888888888876
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-23 Score=234.87 Aligned_cols=316 Identities=14% Similarity=0.108 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
..+.++++.+++++|.+. .++++ +|+++++..++.++ +++||+ |+++..+|.|+..+++.
T Consensus 205 g~v~~~ee~la~l~G~d~--~i~~~-~Gtt~a~~~~i~al---------------~~~GD~--Vlv~~~~h~s~~~~~~~ 264 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR--SWSVV-VGTSGSNRTIMQAC---------------MTDNDV--VVVDRNCHKSIEQGLML 264 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCc--eEEEC-CcHHHHHHHHHHHh---------------cCCCCE--EEECCCchHHHHHHHHH
Confidence 346778999999999862 45665 89999898888877 578986 99999999999999998
Q ss_pred cCCeEEEEecCCC-----CCC-----CHHHHHHHHHHhh-----hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCE
Q 043646 201 SLAEVVEIGLDDN-----GLL-----DIEALRSQLELYK-----AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (625)
Q Consensus 201 ~G~~vv~v~~~~~-----~~l-----d~~~L~~~l~~~~-----~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~ 265 (625)
.|++++.++.+.+ +.+ |+++|+++|+++. ...++++++++++ |++|.+.|+++|+++||+||++
T Consensus 265 ~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR 343 (755)
T ss_dssp HCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSE
T ss_pred cCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCE
Confidence 9999999987643 345 9999999997520 1123459999997 7999999999999999999999
Q ss_pred EEEeccCcCCCc--cc--cCCCCCCCC--CcE------EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 266 ACFDFAASGPYV--KI--NLRSRNIDG--YDA------IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 266 vivD~A~~~g~~--~i--d~~~~~~~~--~D~------v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
+++|+||+.+.. +. +...+ .+ +|+ ++.|+||+++||.+.|+++++++.. .+.
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~---~i~----------- 407 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRG---AIN----------- 407 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBT---CCC-----------
T ss_pred EEEECcCchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccCcCCeeeeeecCccc---ccC-----------
Confidence 999999975321 11 12221 14 576 8999999999998889999987620 000
Q ss_pred eccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc---------EE
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN---------IQ 402 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g---------v~ 402 (625)
...+......+..++|++..+++ ++++++ ...|.+.+.++...+++++++.|.++++ ++
T Consensus 408 --------~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l--~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~ 477 (755)
T 2vyc_A 408 --------FSRFNQAYMMHATTSPLYAICASNDVAVSMM--DGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFK 477 (755)
T ss_dssp --------HHHHHHHHHHTSCSSCCHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCE
T ss_pred --------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceee
Confidence 00001112345567787766543 344443 3333456778888899999999988877 88
Q ss_pred EeCCCCC-C---------------------------------------C------cceEEEEeccC-CCCCCccccccCC
Q 043646 403 VLGNTSV-K---------------------------------------R------QAILSFLVYST-TNSSPENMKIERN 435 (625)
Q Consensus 403 v~~~~~~-~---------------------------------------~------~~i~~f~~~~~-~~~~~~~~~~~~~ 435 (625)
++++... . . ...++|.+... .++ .-..
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G------~~~~ 551 (755)
T 2vyc_A 478 PWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDG------ELEE 551 (755)
T ss_dssp ESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTS------SBCS
T ss_pred ccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCC------Cccc
Confidence 8876420 0 0 12344444211 000 0012
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
.++++.++.+.|.+ +||.+... ..+.+|+++++.+|++++++++++
T Consensus 552 ~g~~~~~l~~~L~~-~gI~~e~~---------------------------------~~~~v~~~~~~g~t~~~~~~l~~a 597 (755)
T 2vyc_A 552 TGVPAALVTAWLGR-HGIVPTRT---------------------------------TDFQIMFLFSMGVTRGKWGTLVNT 597 (755)
T ss_dssp SCCCHHHHHHHHHT-TTCCCSEE---------------------------------CSSEEEEECCTTCCTTTTHHHHHH
T ss_pred cCCcHHHHHHHHHH-CCCEEeec---------------------------------CCCeEEEEECCCCCHHHHHHHHHH
Confidence 35677899999955 89987521 147899999999999999999999
Q ss_pred HHHHHHhh
Q 043646 516 LEFIAAYG 523 (625)
Q Consensus 516 L~~~~~~~ 523 (625)
|+++.+..
T Consensus 598 l~~~~~~~ 605 (755)
T 2vyc_A 598 LCSFKRHY 605 (755)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99997653
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=223.85 Aligned_cols=325 Identities=14% Similarity=0.066 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHhC-C--CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC--ceEEEEcCCCCc
Q 043646 118 RMTKMVHEASNYIKRCLG-G--GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE--RWVVFLGPYEHH 192 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g-~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~ 192 (625)
+..++.+++.+++++..| . +++ +|++| +|+++++..++.++ +++|| +..|+++.+.|+
T Consensus 130 G~~~lr~~ia~~~~~~~gG~~~~~~-~i~~t-~G~~~ai~~~~~~l---------------~~~gd~~~d~Vlv~~p~y~ 192 (498)
T 3ihj_A 130 GVNCIREDVAAYITRRDGGVPADPD-NIYLT-TGASDGISTILKIL---------------VSGGGKSRTGVMIPIPQYP 192 (498)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCCGG-GEEEE-SSHHHHHHHHHHHH---------------CCCCGGGSEEEEEEESCCT
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcc-cEEEc-CCHHHHHHHHHHHH---------------cCCCCCCCCEEEEeCCCch
Confidence 345566667777777664 4 344 89998 89999999998887 45654 235999999999
Q ss_pred hhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEE
Q 043646 193 SNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFAC 267 (625)
Q Consensus 193 s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vi 267 (625)
++...++..|++++.++++++ +.+|+++|++++++.....++++|++++++||||.+.+ +++|+++|++||++++
T Consensus 193 ~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li 272 (498)
T 3ihj_A 193 LYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLL 272 (498)
T ss_dssp HHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred hHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 999899999999999998863 47899999999985311115899999999999999976 5679999999999999
Q ss_pred EeccCcCCCcc-----ccCCCCC--C-----CCCc-EEEEcCCCCCCC-CC-CceEEEE---eccccccCCCCCcccCCc
Q 043646 268 FDFAASGPYVK-----INLRSRN--I-----DGYD-AIFLATHKFLGG-PG-TPGILLI---SKALYQLGSSPPSTCGGG 329 (625)
Q Consensus 268 vD~A~~~g~~~-----id~~~~~--~-----~~~D-~v~~S~hK~lgg-p~-g~G~l~v---~~~~~~l~~~~p~~~ggg 329 (625)
+|++++..... ..+.... . +... +++.|++|.|.| |+ .+|++++ ++++.. .+.
T Consensus 273 ~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~--~l~------- 343 (498)
T 3ihj_A 273 ADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKG--QLV------- 343 (498)
T ss_dssp EECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHH--HHH-------
T ss_pred EEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHH--HHH-------
Confidence 99998753321 1111110 0 0122 566799999943 33 3788885 444411 110
Q ss_pred eEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh----------h-cCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 330 TVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE----------Y-IGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 330 ~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~----------~-~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
. .... ..+++..+.. ++..++.. . ...+.+.++.++.++++.+.|.++
T Consensus 344 -----------------~-~~~~-~~~~~~~~q~--a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 402 (498)
T 3ihj_A 344 -----------------K-LLSV-RLCPPVSGQA--AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQV 402 (498)
T ss_dssp -----------------H-HHHH-SCCCCHHHHH--HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -----------------H-HHhc-cCCCCHHHHH--HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 0111 1222332221 11111100 0 012456677788899999999999
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHH-HHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFV-ATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v-~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
|++++..+ .++++.|........ .....+..+++..++ +..+++++||.+++|..|+.+.
T Consensus 403 ~g~~~~~p----~gg~~~~~~l~~p~~---~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~------------ 463 (498)
T 3ihj_A 403 PGIHCNPL----QGAMYAFPRIFIPAK---AVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQRE------------ 463 (498)
T ss_dssp TTEECCCC----CBSSEECCEECCCHH---HHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCT------------
T ss_pred CCcEecCC----CeEEEEEEeccCchh---hhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCC------------
Confidence 99988765 356666642211000 000000113344443 4445566899999998886321
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
.++++|+++. .++++++.++++|++++.+..
T Consensus 464 --------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 464 --------------GTYHFRMTIL--PPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp --------------TCCBEEEECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHHHHH
Confidence 2478999995 789999999999999877643
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=222.13 Aligned_cols=351 Identities=12% Similarity=-0.006 Sum_probs=212.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYI-KRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~i-a~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
-+.++.+.+++.+.+..-+-.+ .+ ....++++.+ ++++|. .. +++++++|+ +++..++.+++
T Consensus 12 ~~~~~~i~~a~~~~~~~~~~~~------~~----~~~~~l~~~~~a~~~g~-~~-~~v~~~sgt-~al~~al~~l~---- 74 (377)
T 3ju7_A 12 TVPVIEYLDELKEIDASHIYTN------YG----PINQRFEQTIMSGFFQN-RG-AVTTVANAT-LGLMAAIQLKK---- 74 (377)
T ss_dssp CCCGGGGHHHHHHHHHHTCCSS------SC----HHHHHHHHHHHHHTSTT-CS-EEEEESCHH-HHHHHHHHHHS----
T ss_pred CCCcHHHHHHHHHHHHcCCccc------CC----HHHHHHHHHHHHHHhCC-CC-eEEEeCCHH-HHHHHHHHHcC----
Confidence 3456677777777663210000 11 2356788999 999993 22 578886665 45666666653
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCC--CeEEEEecc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKR--PMLGSFSAC 242 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~--~~lv~~~~~ 242 (625)
+++||+ |+++.++|.++...++..|++++.+++++ ++.+|+++|++++.. ++ |++|+ +
T Consensus 75 ----------~~~Gd~--Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~tk~v~---~ 135 (377)
T 3ju7_A 75 ----------RKKGKY--ALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEE----LKEEVAIVV---P 135 (377)
T ss_dssp ----------CTTCCE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHH----HGGGEEEEC---C
T ss_pred ----------CCCcCE--EEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhc----CCCCceEEE---E
Confidence 578986 99999999999999999999999999984 678999999999842 24 88876 5
Q ss_pred cCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEE--EcCCCCCCCCCCceEEEEeccccccCC
Q 043646 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIF--LATHKFLGGPGTPGILLISKALYQLGS 320 (625)
Q Consensus 243 ~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~--~S~hK~lggp~g~G~l~v~~~~~~l~~ 320 (625)
+|++|...|+++|.++|+ ||+++|+|++|+.|... +.+..+....|+.+ ++.||+++++ ..|+++.++... .+.
T Consensus 136 ~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l-~~~ 211 (377)
T 3ju7_A 136 YATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEED-IQR 211 (377)
T ss_dssp BCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHH-HHH
T ss_pred ECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHH-HHH
Confidence 678999999999999999 99999999999987642 22222001235544 4578999864 347777765431 111
Q ss_pred CCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 321 SPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
+.....+|... .+ ......+..++.++.+.+. .. .....+.+.++.+.+++++.+.|.++++
T Consensus 212 ~~~~~~~g~~~-----------~~-~~~~~g~~~~~~~~~aa~~----~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~ 273 (377)
T 3ju7_A 212 IKRMGNFGFDT-----------NR-ECTMMGFNCKMSEYAAAIG----IA--TMKKWDDKLKERTRISEWYKQLLQSNGL 273 (377)
T ss_dssp HHHHTBTTBCT-----------TS-CBCSSCCBCCCCHHHHHHH----HH--HHHTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCC-----------CC-ceeeccccCCCCHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11111111110 00 0001122233444433221 11 1223566677778888889998887765
Q ss_pred EEE-eCCCCCC-CcceE-EEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC--CCCc-hhhHhhhcCCh
Q 043646 401 IQV-LGNTSVK-RQAIL-SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC--ACAG-PYGHTLLAFDQ 474 (625)
Q Consensus 401 v~v-~~~~~~~-~~~i~-~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~--~~~~-~~~~~~l~~~~ 474 (625)
+.+ +.+.... ....+ .+.+ ++ ..+..++.+.|.+ .||.++.+. .|.. +....+....-
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~ 337 (377)
T 3ju7_A 274 MKKGWQLQKTEAVIQQFMPILC-PE--------------EVRNKQVIEDLKK-QKIEARLYFSPSCHQQVLFRNYKSTDL 337 (377)
T ss_dssp TTTTCBCCCCSCBCCSSEEEEC-CT--------------TSCHHHHHHHHHT-TTBCCBCTTSSCGGGSGGGTTSCBSCC
T ss_pred ccccccCCCCCcceEEEEEEEe-CC--------------hhhHHHHHHHHHH-CCCceecccCCccccchhhhcCCCCCC
Confidence 421 1121111 11112 2222 21 1236788999955 799998875 2221 11110000011
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+.++ ..+.+|++++..+|++|+++++++|++++..
T Consensus 338 p~~~~~-----------~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 338 TRTNKI-----------AKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred HHHHHH-----------HhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 111111 1478999999999999999999999877643
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=224.30 Aligned_cols=343 Identities=15% Similarity=0.110 Sum_probs=205.2
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+...+ ++++.. +..+.... ...+.+++++++++|.+.. .+++++|+. ++..++.++
T Consensus 42 ~~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~v~~~~Gs~-a~~~al~~~--- 114 (425)
T 3ecd_A 42 NIVSRAVLDAQGSVLTNKYAEGYPGKR-YYGGCEFADEVEALAIERVKRLFNAGHA--NVQPHSGAQ-ANGAVMLAL--- 114 (425)
T ss_dssp CCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSEE--ECCCSSHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHhhhhhcccccCCCcch-hcCCChHHHHHHHHHHHHHHHHhCCCCc--eeecCchHH-HHHHHHHHc---
Confidence 4458899999988774333 333321 11222221 3344456889999998643 344656665 566666655
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhH-HHHH--HcCC--eEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LSWR--QSLA--EVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~--~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++||+ |+++.++|+++. .... ..|. .++.++.+. ++.+|+++|++++++ +++++|
T Consensus 115 ------------~~~gd~--Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v 176 (425)
T 3ecd_A 115 ------------AKPGDT--VLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ----HKPSLI 176 (425)
T ss_dssp ------------CCTTCE--EEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh----cCCcEE
Confidence 478885 889999998832 2222 3344 555666664 468999999999974 378999
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++++++| |...++++|.++|++||+++|+|++|+.+....+........+|+++.|+||+|+||.| |+++.++...
T Consensus 177 ~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~~~~~~- 252 (425)
T 3ecd_A 177 IAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLTNDEEI- 252 (425)
T ss_dssp EEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEESCHHH-
T ss_pred EEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEeCCHHH-
Confidence 9998777 67889999999999999999999998755432221111112479999999999988875 9998885421
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
...+.+....+ ..++++....+.++.++......+.+.+.++.+.+++++.+.|.+
T Consensus 253 ~~~~~~~~~~~------------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 308 (425)
T 3ecd_A 253 AKKINSAVFPG------------------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA 308 (425)
T ss_dssp HHHHHHHHC-----------------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhCcc------------------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111000 112344333333322322112234567888888899999999987
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
. ++++..+. ....++.+.+.+. +.+...+.+.| +++||.++.+..++.....
T Consensus 309 ~-g~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~l-~~~gi~v~~~~~p~~~~~~---------- 360 (425)
T 3ecd_A 309 G-GVDLVTGG--TDNHLLLVDLRPK--------------GLKGAQVEQAL-ERAGITCNKNGIPFDPEKP---------- 360 (425)
T ss_dssp T-TCEEGGGS--CSSSEEEEECGGG--------------TCCHHHHHHHH-HHTTEECEECCCTTCSSCT----------
T ss_pred C-CCeeccCC--CCceEEEEEeCCC--------------CCCHHHHHHHH-HHcCCEecccccCCCCCCC----------
Confidence 4 78877542 1334444444321 23466788877 4579999965432210000
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCC----CHHHHHHHHHHHHHHHHhh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYM----SNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~----t~edid~ll~aL~~~~~~~ 523 (625)
..++.+|++++..+ +++|+++++++|++++.+.
T Consensus 361 -------------~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 361 -------------TITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp -------------TTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 02468999965444 5999999999999988764
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=220.66 Aligned_cols=306 Identities=15% Similarity=0.097 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
.....+++++.+++++|.+ + .++|+ +| +++++.++. + +++||+ |+++..+|++....+
T Consensus 53 ~~~~~~~lr~~la~~~g~~-~-~i~~~-sG-t~a~~~al~-~---------------~~~gd~--Vi~~~~~y~~~~~~~ 110 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ-Y-GLAFS-SG-SATTATILQ-S---------------LPQGSH--AVSIGDVYGGTHRYF 110 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS-E-EEEES-CH-HHHHHHHHH-T---------------SCSSCE--EEEESSCCHHHHHHH
T ss_pred CChhHHHHHHHHHHHhCCC-c-EEEEC-Ch-HHHHHHHHH-H---------------cCCCCE--EEEeCCCchHHHHHH
Confidence 3456788999999999986 2 56665 77 577888777 5 468885 888888998766544
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc----CCEEEEec
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY----GGFACFDF 270 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~----g~~vivD~ 270 (625)
+..|++++.++.+ | ++|+++++ +++++|++++++||||.+.|+++|+++|+++ |+++|+|+
T Consensus 111 ~~~~~~~G~~v~~v~~~-----d-~~l~~~i~-----~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~ 179 (393)
T 1n8p_A 111 TKVANAHGVETSFTNDL-----L-NDLPQLIK-----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179 (393)
T ss_dssp HHTSTTTCSCCEEESSH-----H-HHHHHHSC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHcCcEEEEeCCC-----h-HHHHHhcc-----cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3469999999875 6 88888886 5799999999999999999999999999999 99999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc-eEEEEe-ccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP-GILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+++.+... ++..+ ++|++++|+||++|+++ .+ |+++++ +++. +.+.+.
T Consensus 180 a~~~~~~~-~~~~~---~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~--~~l~~~----------------------- 230 (393)
T 1n8p_A 180 TFLSPYIS-NPLNF---GADIVVHSATKYINGHSDVVLGVLATNNKPLY--ERLQFL----------------------- 230 (393)
T ss_dssp TTTHHHHC-CGGGG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHHH--HHHHHH-----------------------
T ss_pred CccccccC-CHHHc---CCeEEEEECcccccCCCCceeEEEEeCCHHHH--HHHHHH-----------------------
Confidence 99876542 33333 78999999999998544 15 888885 4542 111100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc-EE-EeCCCC-------------CC-C
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN-IQ-VLGNTS-------------VK-R 411 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g-v~-v~~~~~-------------~~-~ 411 (625)
.....++.+..... +++..+ + ......++....++.+.+.|.+.+. +. +..+.- .. .
T Consensus 231 --~~~~g~~~~~~~~~-~~~~~l--~--~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~ 303 (393)
T 1n8p_A 231 --QNAIGAIPSPFDAW-LTHRGL--K--TLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDAL 303 (393)
T ss_dssp --HHHHCCCCCHHHHH-HHHHHH--T--THHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGC
T ss_pred --HHhcCCCCCHHHHH-HHHhcc--c--hHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCC
Confidence 00111222221111 111111 1 1333344455567777888877765 54 322210 01 3
Q ss_pred -cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---h--hhHhhhcCChhhHHHHHHHHH
Q 043646 412 -QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---P--YGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 412 -~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~--~~~~~l~~~~~~~~~~~~~~~ 485 (625)
+++++|.+.... .....+...| +.++|.++.|.+|+. | ..|. .+..+..
T Consensus 304 ~~~i~~~~l~~~~--------------~~~~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~--~~~~~~~-------- 358 (393)
T 1n8p_A 304 GGGMISFRIKGGA--------------EAASKFASST-RLFTLAESLGGIESLLEVPAVMTHG--GIPKEAR-------- 358 (393)
T ss_dssp CCSEEEEEESSCH--------------HHHHHHHHHC-SSSEECSCCCCSSCEEECTTTTTSC--SSCTTTT--------
T ss_pred CccEEEEEeCCcH--------------HHHHHHHhhC-CcceECCCCCCCcceeecccccccc--ccCHHHH--------
Confidence 667887764210 0123455555 346778888877652 1 1111 0000000
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...|+.++.+|||++.++++++++.+.++|+++
T Consensus 359 -~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 359 -EASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp -TTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred -HhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 012344689999999999999999999999865
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=223.96 Aligned_cols=298 Identities=12% Similarity=0.074 Sum_probs=208.1
Q ss_pred HHHHHHHHHHh-----CCCCCCc---EEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 124 HEASNYIKRCL-----GGGQADA---IIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 124 ~~~~~~ia~~~-----g~~~~~~---vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
.++++.+++++ +++++ + |++| +|+++++..++.++ +++||+ |+++.+.|+++.
T Consensus 91 ~~lr~~ia~~~~~~~~~~~~~-~~~~i~~t-~g~~~al~~~~~~l---------------~~~gd~--Vl~~~p~y~~~~ 151 (430)
T 2x5f_A 91 EELRDLWQQKMLRDNPELSID-NMSRPIVT-NALTHGLSLVGDLF---------------VNQDDT--ILLPEHNWGNYK 151 (430)
T ss_dssp HHHHHHHHHHHHHHCTTCCGG-GBCCCEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCTHHH
T ss_pred HHHHHHHHHHHhccCcccCCC-ccceEEEc-CCchHHHHHHHHHH---------------hCCCCE--EEEcCCcCccHH
Confidence 45666677766 77666 7 8998 78899999998887 478885 899999999998
Q ss_pred HHHHH-cCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHH-----cCCE
Q 043646 196 LSWRQ-SLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQ-----YGGF 265 (625)
Q Consensus 196 ~~~~~-~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~-----~g~~ 265 (625)
..++. .|++++.++++. ++.+|+++|++++++. ..+++++++++|+||||.+.| +++|+++|++ ||++
T Consensus 152 ~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~ 229 (430)
T 2x5f_A 152 LVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY--NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVI 229 (430)
T ss_dssp HHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC--CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc--CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEE
Confidence 88888 899999999876 4578999999999831 127899999999999999988 8899999999 9999
Q ss_pred EEEeccCcCCCc------cc--cCCCCCCCCC---cEEEEcCCCCCCCCC-CceEEEE---eccccccCCCCCcccCCce
Q 043646 266 ACFDFAASGPYV------KI--NLRSRNIDGY---DAIFLATHKFLGGPG-TPGILLI---SKALYQLGSSPPSTCGGGT 330 (625)
Q Consensus 266 vivD~A~~~g~~------~i--d~~~~~~~~~---D~v~~S~hK~lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~ 330 (625)
+|+|++++.... ++ ++... .+. ++++.|+||+||.|+ .+|++++ ++++.. .+.....
T Consensus 230 li~De~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~--~l~~~~~---- 301 (430)
T 2x5f_A 230 AVVDDAYYGLFYEDVYTQSLFTALTNL--HSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKE--VLEAKVK---- 301 (430)
T ss_dssp EEEECTTTTCBCSSSCCSCHHHHHHTT--CCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHH--HHHHHHH----
T ss_pred EEEehhcccccCCcccchHHHHHHhhc--cCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHH--HHHHHHh----
Confidence 999999875321 11 22111 134 677889999997553 3799999 776621 1110000
Q ss_pred EEeeccccccccccccchhhhhcCCChhHHHHH--HHHHH-HHHHhhcCHHHHHHHHHHHHHHHHHhhC----CCCcEEE
Q 043646 331 VNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALA-FWVKEYIGYEVIKKQEDVYIESALGRIL----PNQNIQV 403 (625)
Q Consensus 331 v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~-~~~~~~~g~~~i~~~~~~l~~~l~~~L~----~l~gv~v 403 (625)
. ..+....+++..... .+++. -.. -....+.+.++.+.+++++.+.|. ++ ++++
T Consensus 302 ----------------~-~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~ 362 (430)
T 2x5f_A 302 ----------------G-LIRSNISSGPLPTQSAVKHVLKNNKQ-FDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQA 362 (430)
T ss_dssp ----------------H-HHHTTTSSCCHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEE
T ss_pred ----------------h-hhhcccCCCChHHHHHHHHHHccChH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Ccee
Confidence 0 001112233333321 22332 100 001133477778888899999998 55 7887
Q ss_pred eCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHH
Q 043646 404 LGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSA 483 (625)
Q Consensus 404 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~ 483 (625)
..+ .++++.+...++ ++..++.+.|.+++||.+++| .
T Consensus 363 ~~~----~~g~~~~~~~~~---------------~~~~~~~~~l~~~~gi~v~~g---~--------------------- 399 (430)
T 2x5f_A 363 YDF----NSGYFMAIKVHD---------------VDPEALRKHLIDKYSIGVIAL---N--------------------- 399 (430)
T ss_dssp CCC----CBSSEEEEEESS---------------SCHHHHHHHHHHHHCEECEEC---S---------------------
T ss_pred eCC----CceEEEEeCCCC---------------CCHHHHHHHHHHhCCEEEecC---C---------------------
Confidence 655 345544443332 246678888876589999976 1
Q ss_pred HHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 484 IQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 484 ~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||++++ ++++++++++++|++++.+
T Consensus 400 ---------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 400 ---------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ---------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred ---------CCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 3789999985 5899999999999998765
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=221.29 Aligned_cols=346 Identities=12% Similarity=0.003 Sum_probs=219.0
Q ss_pred CceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH--hC-CCCCCcEEEeCChHHH
Q 043646 76 RRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC--LG-GGQADAIIFCGAGTTA 151 (625)
Q Consensus 76 ~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~--~g-~~~~~~vift~sGtta 151 (625)
+..++|+.+... +.++.+.+++.+.+...........|.. .....++++.++++ .| ++++ +|++| +|+++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~----~~g~~~lr~~la~~l~~g~~~~~-~v~~~-~G~~~ 106 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP----DFGLPALRQKLSEDFYRGFVDAK-EIFIS-DGAKV 106 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC----TTCCHHHHHHHHHTTSTTSSCGG-GEEEE-SCHHH
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC----CCCCHHHHHHHHHHHHcCCCCHH-HEEEc-cChHH
Confidence 457888887664 5678889988877643211111111111 11245688888888 47 5555 89998 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-EEEEecCCCCCCCHHHHHHHHHHhhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-VVEIGLDDNGLLDIEALRSQLELYKA 230 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~~~~~ld~~~L~~~l~~~~~ 230 (625)
++..++..+ .+||+ |++..+.|+++...++..|++ ++.+++++++.++.+ +++ +
T Consensus 107 al~~~~~~~----------------~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~----- 161 (400)
T 3asa_A 107 DLFRLLSFF----------------GPNQT--VAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPE-D----- 161 (400)
T ss_dssp HHHHHHHHH----------------CSSCE--EEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCT-T-----
T ss_pred HHHHHHHHc----------------CCCCE--EEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhh-c-----
Confidence 888876543 57775 888889999988888888998 999998754322211 211 1
Q ss_pred CCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCc-CCC---ccccCCCCCC-CCCcEEEEcCCCCCCC
Q 043646 231 AKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS-GPY---VKINLRSRNI-DGYDAIFLATHKFLGG 302 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~-~g~---~~id~~~~~~-~~~D~v~~S~hK~lgg 302 (625)
+++++|++++++||||.+.| +++|+++|+++|+++|+|++++ +.. .+.++..+.. .+.++++.|++|+||.
T Consensus 162 -~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 240 (400)
T 3asa_A 162 -THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGF 240 (400)
T ss_dssp -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTT
T ss_pred -cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCC
Confidence 46899999999999999987 5678899999999999999987 322 2233333210 1234888999999974
Q ss_pred CC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHH
Q 043646 303 PG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIK 381 (625)
Q Consensus 303 p~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~ 381 (625)
|+ .+|++++++++. .... ..+ .... ........++++...... +.+++ .+ ...+.+.
T Consensus 241 ~GlriG~~~~~~~~~--~~~~------~~~----------~~~~-~~~~~~~~~~~~~~~~~a-~~~~l-~~-~~~~~~~ 298 (400)
T 3asa_A 241 AGIRLGWTVIPQELT--YADG------HFV----------IQDW-ERFLSTTFNGASIPAQEA-GVAGL-SI-LPQLEAI 298 (400)
T ss_dssp TTCCCEEEECCTTCB--CTTS------CBH----------HHHH-HHHHHHHCCCCCHHHHHH-HHHHH-HH-TTTCHHH
T ss_pred cchheeEEeeChhhc--cchh------hhH----------HHHH-HHHhccCccCCChHHHHH-HHHHh-Cc-HHHHHHH
Confidence 43 479999887762 1110 000 0000 001112233444443322 22222 12 2456777
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.+.+++++.+.|.++ ++++..+. .+.++.+.+.+. +++..++.+.|.+++||.+++|..|
T Consensus 299 ~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~gv~v~~g~~f 360 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT-GFEVFGGE---HAPYLWVKPTQA--------------NISDRDLFDFFLREYHIAITPGIGF 360 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEECS---SSSEEEEECCCT--------------TCCTTTHHHHHHHHHSEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHC-CCeeeCCC---CceEEEEeccCC--------------CCCHHHHHHHHHHhCCEEEeChhHh
Confidence 88888899999999877 78877542 223333331331 1223467777766679999998877
Q ss_pred CchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 462 AGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
... .++++|||+ +++++++++++++|+++++.
T Consensus 361 ~~~---------------------------~~~~iRis~--~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 361 GRS---------------------------GSGFVRFSS--LGKREDILAACERLQMAPAL 392 (400)
T ss_dssp CGG---------------------------GTTCEEEEC--CSCHHHHHHHHHHHHC----
T ss_pred CCC---------------------------CCCEEEEEe--eCCHHHHHHHHHHHHHHHHh
Confidence 511 147899994 57999999999999877644
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=218.24 Aligned_cols=307 Identities=12% Similarity=0.009 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH--HHHHHhcccccchhhhhhhhccC--C---------CCceEEEEcCC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIK--RLQEVMGITVPSIMRDKLITSLR--D---------EERWVVFLGPY 189 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~--~l~~~l~~~~~~~~~~~~~~~l~--~---------gd~~~Vlv~~~ 189 (625)
..++++.++++++++++ +|++| +|+++++. .++.++ +. + || .|++..+
T Consensus 72 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~~~~~~~~l---------------~~~~~g~~~~~~~~gd--~Vlv~~p 132 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAE-NVLVW-NNSSLELQGLVLTFAL---------------LHGVRGSTGPWLSQTP--KMIVTVP 132 (423)
T ss_dssp CHHHHHHHHHHTTSCGG-GEEEC-SSCHHHHHHHHHHHHH---------------HTCCTTCSSCGGGGCC--EEEEEES
T ss_pred hHHHHHHHHHHhCCChh-hEEEe-CCcHHHHHHHHHHHHH---------------hccCCCccccccCCCC--EEEEcCC
Confidence 45689999999999877 89998 78888887 676665 24 5 35 4999999
Q ss_pred CCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE-ecccCccccccCHH---HHHHHH-HHcCC
Q 043646 190 EHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF-SACSNVTGIYSDTR---SIARLL-HQYGG 264 (625)
Q Consensus 190 ~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~-~~~~n~TG~~~~l~---~I~~la-~~~g~ 264 (625)
.|+.+...++..|++++.++++.++ +|+++|++++++. +++++|++ ++++||||.+.+.+ +|+++| ++||+
T Consensus 133 ~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~ 208 (423)
T 3ez1_A 133 GYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD---PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF 208 (423)
T ss_dssp CCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC---TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC
T ss_pred CcHHHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC---CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC
Confidence 9999988899999999999998765 8999999999521 57888865 58999999999877 888888 89999
Q ss_pred EEEEeccCcCCCc-------cccCCCC----CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 265 FACFDFAASGPYV-------KINLRSR----NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 265 ~vivD~A~~~g~~-------~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
++|+|++++.... ..++..+ +..+.++++.|++|++++..++|++++++++.. .+...
T Consensus 209 ~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~--~~~~~--------- 277 (423)
T 3ez1_A 209 TIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIR--WLSKY--------- 277 (423)
T ss_dssp EEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHH--HHHHH---------
T ss_pred EEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHH--HHHHH---------
Confidence 9999999873211 1111100 112457888999998543446899999887622 11000
Q ss_pred eccccccccccccchhhhhcCCChhHHHHH-HHHHHHH---HHhh--cCHHHHHHHHHHHHHHHHHhhCCCC-cEEEeCC
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFW---VKEY--IGYEVIKKQEDVYIESALGRILPNQ-NIQVLGN 406 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~---~~~~--~g~~~i~~~~~~l~~~l~~~L~~l~-gv~v~~~ 406 (625)
......+.+.+.+.+ .+++.-+ +.+. .-.+.+.++...+.+.+.+.|..++ ++++..+
T Consensus 278 ---------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p 342 (423)
T 3ez1_A 278 ---------------LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLP 342 (423)
T ss_dssp ---------------HHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCC
T ss_pred ---------------HhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCC
Confidence 011112222222221 1112110 0000 0012223334444555666666665 5777655
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
. .+.+.+...+.. +..++.+.|. ++||.+++ |.+|... .
T Consensus 343 ~----~g~~~~~~~~~~---------------~~~~~~~~l~-~~gv~v~~~g~~~~~~--~------------------ 382 (423)
T 3ez1_A 343 K----GGYFISLDTAEP---------------VADRVVKLAE-AAGVSLTPAGATYPAG--Q------------------ 382 (423)
T ss_dssp S----BSSCEEEEESSS---------------CHHHHHHHHH-HTTEECCCTTTTSSTT--C------------------
T ss_pred C----ccEEEEEECCCC---------------cHHHHHHHHH-HCCcEEecCcccccCC--C------------------
Confidence 3 344444444321 3567777774 57999998 6555411 0
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++++||+++.. ++++++.++++|++++.+.
T Consensus 383 ----~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 383 ----DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp ----CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 00258999999766 9999999999999988664
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=220.18 Aligned_cols=343 Identities=17% Similarity=0.170 Sum_probs=215.3
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHHHHHHHHH-HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMTKMVHEAS-NYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~~~~~~~~-~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+.++.|.+++.+.+...+ ++|... +..+....+..+++. +++++++|++.. .+++++|+.+ +..++.++
T Consensus 55 ~~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~~e~~a~~~la~~~g~~~~--~v~~~sGs~a-~~~a~~~~--- 127 (447)
T 3h7f_A 55 NFVPRAVLQAQGSVLTNKYAEGLPGRR-YYGGCEHVDVVENLARDRAKALFGAEFA--NVQPHSGAQA-NAAVLHAL--- 127 (447)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSHHHH-HHHHHHHH---
T ss_pred CCCCHHHHHHHHHHhcCCccccCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCce--EEEeCCHHHH-HHHHHHHh---
Confidence 4458899999988775333 233321 222333344445455 999999998743 3325577664 55555555
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhH-HH----HHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNL-LS----WRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~----~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++||+ |+++..+|.++. .. +...+..++.++++. ++.+|+++|++++.+ .+++++
T Consensus 128 ------------~~~Gd~--Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~i 189 (447)
T 3h7f_A 128 ------------MSPGER--LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE----FRPKVI 189 (447)
T ss_dssp ------------CCTTCE--EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh----cCCeEE
Confidence 578886 888888887622 11 122345677777764 678999999999974 368899
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
+++.++|+++. ++++|.++|++||+++|+|++|+.|....+.......++|+++.|+||+|+||.| |+++.++++..
T Consensus 190 ~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~ 266 (447)
T 3h7f_A 190 IAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRS-GLIVGKQQYAK 266 (447)
T ss_dssp EEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSC-EEEEECGGGHH
T ss_pred EEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCe-EEEEECHHHHH
Confidence 99889998876 9999999999999999999998755322111111113679999999999998987 99998887621
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+.+.. .....|+++...+++++.++......+.+.+.++..++++++.+.|.+
T Consensus 267 --~l~~~~------------------------~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 267 --AINSAV------------------------FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp --HHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred --HHhhhc------------------------CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111100 111234444433333333332112224567788888889999999987
Q ss_pred C----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 398 N----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 398 l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
. ++++++.+. .....+.+.+.+ .+++...+.+.| ++.||.++....+......
T Consensus 321 ~~~~~~g~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~~~~l-~~~GI~v~~~~i~~~~~~p------ 377 (447)
T 3h7f_A 321 PDVAKAGVSVVSGG--TDVHLVLVDLRD--------------SPLDGQAAEDLL-HEVGITVNRNAVPNDPRPP------ 377 (447)
T ss_dssp HHHHHTTCEEGGGS--CSSSEEEEECTT--------------SSCCHHHHHHHH-HHTTEECBC----------------
T ss_pred ccccCCCeEEecCC--CCCCEEEEEcCC--------------CCCCHHHHHHHH-HHCCeEEecccCCCCCCCC------
Confidence 6 578876531 122333333322 234456666666 5579999832211100000
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYY----MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~----~t~edid~ll~aL~~~~~~~ 523 (625)
..++++||+++.. .+++|+++++++|++++...
T Consensus 378 -----------------~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 378 -----------------MVTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp --------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred -----------------CCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 0247799998644 67999999999999987653
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=220.38 Aligned_cols=304 Identities=12% Similarity=0.003 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHH--HHHHHHhcccccchhhhhhhhccC--C----------CCceEEEEcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAI--KRLQEVMGITVPSIMRDKLITSLR--D----------EERWVVFLGP 188 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal--~~l~~~l~~~~~~~~~~~~~~~l~--~----------gd~~~Vlv~~ 188 (625)
..++|+.|+++++++++ +|++| +|+++++ ..++.++. . | ||+ |++..
T Consensus 80 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~~~~~~~~l~---------------~~~~g~~~~~~~~~gd~--V~v~~ 140 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVE-QVLAG-DASSLNIMFDVISWSYI---------------FGNNDSVQPWSKEETVK--WICPV 140 (427)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------HCCTTCSSCGGGSSCCE--EEEEE
T ss_pred cHHHHHHHHHHhCCCcc-eEEEe-CCcHHHHHHHHHHHHHh---------------ccCCcccccccCCCCCE--EEEcC
Confidence 45688999999999877 89998 7888888 46666652 3 4 664 99999
Q ss_pred CCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEe-cccCccccccCHH---HHHHHH-HHcC
Q 043646 189 YEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFS-ACSNVTGIYSDTR---SIARLL-HQYG 263 (625)
Q Consensus 189 ~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~-~~~n~TG~~~~l~---~I~~la-~~~g 263 (625)
+.|+++...++..|++++.+|++.++ +|+++|+++++. +++++|++. +++||||.+.|.+ +|+++| ++||
T Consensus 141 p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~ 215 (427)
T 3ppl_A 141 PGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVKN----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD 215 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred CCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhc----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCC
Confidence 99999998999999999999998776 999999999852 578888765 8899999999877 888888 9999
Q ss_pred CEEEEeccCcCCCc------cccCCCC----CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 264 GFACFDFAASGPYV------KINLRSR----NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 264 ~~vivD~A~~~g~~------~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
+++|+|++++.... ++++..+ +..+.++++.|++|++++..++|+++.++++.. .+..
T Consensus 216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~--~~~~---------- 283 (427)
T 3ppl_A 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRK--WYTG---------- 283 (427)
T ss_dssp CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHH--HHHH----------
T ss_pred CEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHH--HHHH----------
Confidence 99999999874211 1121110 012567889999999543346899998877621 1100
Q ss_pred eccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh----hcCHHHHHHHH----HHHHHHHHHhhCCCCcEEEeC
Q 043646 334 VNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE----YIGYEVIKKQE----DVYIESALGRILPNQNIQVLG 405 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~----~~g~~~i~~~~----~~l~~~l~~~L~~l~gv~v~~ 405 (625)
.......+++.+.+.+. ..++ .. ....+...++. ..+.+.+.+.|..++++++..
T Consensus 284 --------------~~~~~~~~~~~~~q~~~--~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~ 346 (427)
T 3ppl_A 284 --------------HAGIRGIGPNKVNQLAH--ARYF-GDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTV 346 (427)
T ss_dssp --------------HHHHHCSCCCHHHHHHH--HHHH-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECC
T ss_pred --------------HhhcccCCCCHHHHHHH--HHHH-hChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeC
Confidence 01111122333332211 1111 01 00122233333 333444444444444677665
Q ss_pred CCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 406 NTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 406 ~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
+. .+.+.+...+.. +..++.+.|. ++||.+++|..|-.. +.
T Consensus 347 p~----~g~~~~~~~~~~---------------~~~~~~~~l~-~~gv~v~~~g~~~~~-~~------------------ 387 (427)
T 3ppl_A 347 PA----GGYFISLDVVPG---------------TASRVAELAK-EAGIALTGAGSSYPL-RQ------------------ 387 (427)
T ss_dssp CS----BSSCEEEECSTT---------------CHHHHHHHHH-HTTEECCCTTTTSGG-GC------------------
T ss_pred CC----ccEEEEEECCcc---------------hHHHHHHHHH-HCCCEEecCcCcCCC-CC------------------
Confidence 53 355444444321 3567888775 579999985444311 00
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
...++++|||++.. ++++++.++++|++++.+.
T Consensus 388 ----~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 388 ----DPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp ----CTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 00258999999755 8999999999999987654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=215.84 Aligned_cols=348 Identities=11% Similarity=0.023 Sum_probs=222.1
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
.|+.+.+++.+.+... .|.. ......++++.+++++|.+ ++++| +|+++++..++.++
T Consensus 30 ~p~~~~~a~~~~~~~~-------~y~~---~~~~~~~l~~~la~~~~~~---~v~~~-~ggt~al~~~l~~l-------- 87 (424)
T 2po3_A 30 DRARLYERLDRALDSQ-------WLSN---GGPLVREFEERVAGLAGVR---HAVAT-CNATAGLQLLAHAA-------- 87 (424)
T ss_dssp CHHHHHHHHHHHHHHT-------CCSS---SCHHHHHHHHHHHHHHTSS---EEEEE-SCHHHHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHhcC-------Cccc---CCHHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHc--------
Confidence 4678888887776321 0111 0234677899999999973 78998 67888888888776
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG 247 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG 247 (625)
.+||+ |+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|++++ +||
T Consensus 88 --------~~gd~--Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~tG 149 (424)
T 2po3_A 88 --------GLTGE--VIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVT-----PRTSAVVGVH---LWG 149 (424)
T ss_dssp --------TCCSE--EEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC-----TTEEEEEEEC---GGG
T ss_pred --------CCCCE--EEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC-----cCCcEEEEEC---CCC
Confidence 35664 99999999999988899999999999986 67899999999887 4789888754 899
Q ss_pred cccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEe-ccccccCCCCCc
Q 043646 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATH--KFLGGPGTPGILLIS-KALYQLGSSPPS 324 (625)
Q Consensus 248 ~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~-~~~~~l~~~~p~ 324 (625)
...++++|.++|+++|+++|+|++++.|.. .+...+.. ..|++++|+| |++++ ...|+++.+ +++. +.+.+.
T Consensus 150 ~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~-~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~--~~l~~~ 224 (424)
T 2po3_A 150 RPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPAGS-LGDAEVFSFHATKAVNA-FEGGAVVTDDADLA--ARIRAL 224 (424)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCC-SSCEEEEESCHHHH--HHHHHH
T ss_pred CcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeeccc-ccCEEEEeCCCCCCccC-CCCeEEEeCCHHHH--HHHHHH
Confidence 999999999999999999999999997654 22222211 2588888887 98876 446888888 4552 122111
Q ss_pred ccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL 404 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~ 404 (625)
...++.. .+. .. .........++.. ++.+. ...+.+.+.++.+.+++++.+.|.++++++++
T Consensus 225 ~~~~~~~----~~~---~~-----~~g~~~~~~~~~a----a~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 286 (424)
T 2po3_A 225 HNFGFDL----PGG---SP-----AGGTNAKMSEAAA----AMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLVA 286 (424)
T ss_dssp HBTTTTC----TTC---CT-----TCCCBCCCCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEEC
T ss_pred HhcCccc----ccc---cc-----ccCcCCCcCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 1111100 000 00 0000001112211 11111 11235667788888999999999998899987
Q ss_pred CCC-CCCC-cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC---hhhHHH
Q 043646 405 GNT-SVKR-QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD---QTRSLE 479 (625)
Q Consensus 405 ~~~-~~~~-~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~---~~~~~~ 479 (625)
.+. .... ..++.+.+... ..+++..++.+.|.+ +||.+++.+.........+.+++ .+...+
T Consensus 287 ~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r 353 (424)
T 2po3_A 287 DHDRHGLNNHQYVIVEIDEA------------TTGIHRDLVMEVLKA-EGVHTRAYFSPGCHELEPYRGQPHAPLPHTER 353 (424)
T ss_dssp CGGGGSCCCCCCEEEEECHH------------HHSSCHHHHHHHHHH-TTEECBCTTCSCGGGSTTTTTSCCCCCHHHHH
T ss_pred CCCCCCccccEEEEEEECCc------------cchhhHHHHHHHHHH-CCCceecccCCccccchhhhhcCCCCChhHHH
Confidence 632 1111 13444444210 001346688888854 79999873321100000000110 001111
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+ ....+|++++.+++++|+++++++|++++.+.
T Consensus 354 ~-----------~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 354 L-----------AARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp H-----------HTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred H-----------hcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0 12458898889999999999999999987654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-22 Score=211.87 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
......++++++++++|.+ .++++++|+ +++..++.++ +++||+ |+++...|+++...+
T Consensus 57 ~~~~~~~l~~~la~~~g~~---~~i~~~sG~-~ai~~~~~~~---------------~~~gd~--vl~~~~~y~~~~~~~ 115 (389)
T 3acz_A 57 GNPTVEQFEEMVCSIEGAA---GSAAFGSGM-GAISSSTLAF---------------LQKGDH--LIAGDTLYGCTVSLF 115 (389)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHTTT---------------CCTTCE--EEEESSCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHH---------------hCCCCE--EEEeCCCchHHHHHH
Confidence 3456788999999999986 344444776 7777776654 467885 899999999887664
Q ss_pred ----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 ----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
+..|++++.++.. |+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|++++.
T Consensus 116 ~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~ 185 (389)
T 3acz_A 116 THWLPRFGIEVDLIDTS-----DVEKVKAAWK-----PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTS 185 (389)
T ss_dssp HHHHHHTTCEEEEECTT-----CHHHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred HHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 5579999999863 8999999887 5789999999999999999999999999999999999999987
Q ss_pred CCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEec-cc
Q 043646 275 PYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISK-AL 315 (625)
Q Consensus 275 g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~-~~ 315 (625)
+.....+. + ++|+++.|+||++++|++ .|++++++ ++
T Consensus 186 ~~~~~~~~-~---~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~ 225 (389)
T 3acz_A 186 PCFLKPLE-L---GADIALHSVSKYINGHGDVIGGVSSAKTAED 225 (389)
T ss_dssp TTTCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEESSHHH
T ss_pred ccccCccc-c---CCeEEEECChhhccCCCCceeEEEEECcHHH
Confidence 76322221 2 789999999999999877 59999988 66
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=214.06 Aligned_cols=308 Identities=14% Similarity=0.019 Sum_probs=210.9
Q ss_pred ceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHH
Q 043646 77 RLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG---GGQADAIIFCGAGTTAA 152 (625)
Q Consensus 77 ~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g---~~~~~~vift~sGttaa 152 (625)
..+||+++... +.++.+.+++.+.+... ... .| .. ....++++.++++++ ++++ +|++| +|++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~-~y--~~---~~~~~lr~~la~~~~~~~~~~~-~v~~~-~G~~~a 88 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSD---ALR-IY--YD---SPDEELIEKILSYLDTDFLSKN-NVSVG-NGADEI 88 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGG---GGG-SC--CC---SSCHHHHHHHHHHHTCSSCCGG-GEEEE-SSHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhh---hhh-cC--CC---CchHHHHHHHHHHcCCCCCCHH-HEEEc-CChHHH
Confidence 57999988874 56889999998876321 000 11 11 025678999999999 6665 89998 788888
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..++.+ + || .|+++ +.|+++...++..|++++.++.++++.+|+++| +
T Consensus 89 l~~~~~~----------------~--gd--~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l----------~ 137 (335)
T 1uu1_A 89 IYVMMLM----------------F--DR--SVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV----------G 137 (335)
T ss_dssp HHHHHHH----------------S--SE--EEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC----------C
T ss_pred HHHHHHH----------------h--CC--cEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc----------C
Confidence 9888764 3 45 48888 999999888888999999999877667787766 2
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCc--cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV--KINLRSRNIDGYDAIFLATHKFLGGPG-TPGIL 309 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~--~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l 309 (625)
++++|++++|+||||.+.|.++|.++++..| ++|+|++++.... .++. ....+.++++.|++|++|.|+ .+|++
T Consensus 138 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~g~~G~r~G~~ 214 (335)
T 1uu1_A 138 EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDF--LKKYENLAVIRTFSKAFSLAAQRVGYV 214 (335)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGG--GGTCSSEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHH--hhhCCCEEEEecchhhcCCcccCeEEE
Confidence 6899999999999999999999999999989 9999999873111 1221 111255788999999997443 37999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIE 389 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (625)
++++++.. .+.+. ....+++...... +.+++ ......+.+.++.+++++
T Consensus 215 ~~~~~~~~--~l~~~---------------------------~~~~~~~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~~~ 263 (335)
T 1uu1_A 215 VASEKFID--AYNRV---------------------------RLPFNVSYVSQMF-AKVAL-DHREIFEERTKFIVEERE 263 (335)
T ss_dssp EECHHHHH--HHHHH---------------------------SCTTCSCHHHHHH-HHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred EeCHHHHH--HHHHh---------------------------cCCCCcCHHHHHH-HHHHh-CCHHHHHHHHHHHHHHHH
Confidence 99877621 11100 0011333333221 12222 122235567777888888
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+.|.++ ++++..+ .+.++.+. .+. .+..++.+.|.+ +||.++++
T Consensus 264 ~l~~~L~~~-g~~~~~~----~~~~~~~~-~~~---------------~~~~~~~~~l~~-~gi~v~~~----------- 310 (335)
T 1uu1_A 264 RMKSALREM-GYRITDS----RGNFVFVF-MEK---------------EEKERLLEHLRT-KNVAVRSF----------- 310 (335)
T ss_dssp HHHHHHHHH-TCCBCCC----CSSEEEEE-CCT---------------HHHHHHHHHHHH-HTEEEEEE-----------
T ss_pred HHHHHHHHC-CcEEcCC----CCeEEEEE-CCC---------------CCHHHHHHHHHH-CCEEEEEC-----------
Confidence 999888776 5654322 23443332 221 124578888865 79999851
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
++++|||++ +++|+++++++|+++
T Consensus 311 -----------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 -----------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -----------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -----------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 378999996 578999999998753
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=223.37 Aligned_cols=307 Identities=12% Similarity=0.136 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW-- 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (625)
...+++++++++++|.+ +++++++|++ ++..++. + +++||+ |+++.+.|+++...+
T Consensus 133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~-al~~~l~-~---------------~~~Gd~--Vi~~~~~y~~~~~~~~~ 190 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD---RAFCFTSGMA-ALSAVTH-L---------------IKNGEE--IVAGDDVYGGSDRLLSQ 190 (464)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESSHHH-HHHHHHT-T---------------SCTTCE--EEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHH-HHHHHHH-H---------------hCCCCE--EEEECCCchhHHHHHHH
Confidence 36788999999999974 4566657755 6766553 2 578885 888999999887654
Q ss_pred --HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 199 --RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 199 --~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
+..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|++++.|.
T Consensus 191 ~~~~~G~~v~~v~~~-----d~~~l~~~i~-----~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~ 260 (464)
T 1ibj_A 191 VVPRSGVVVKRVNTT-----KLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_dssp TSGGGTCEEEEECTT-----SHHHHHHHCC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTT
T ss_pred HHHHcCCEEEEeCCC-----CHHHHHHHhc-----cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 3469999999875 8999999987 589999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCCcEEEEcCCCCCCCCCCc--eEEEEec-cccccCCCCCcccCCceEEeeccccccccccccchhhhhc
Q 043646 277 VKINLRSRNIDGYDAIFLATHKFLGGPGTP--GILLISK-ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN 353 (625)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g~--G~l~v~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~ 353 (625)
....+. + +.|+++.|+||++++|.|+ |++++++ ++. +.+.+.. ...
T Consensus 261 ~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~--~~l~~~~-------------------------~~~ 309 (464)
T 1ibj_A 261 LSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGEKLA--KEVYFLQ-------------------------NSE 309 (464)
T ss_dssp TCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECSHHHH--HHHHHHH-------------------------HHT
T ss_pred cCChhh-c---CCEEEEECCcccccCCCCCcEEEEEEChHHHH--HHHHHHH-------------------------Hhc
Confidence 421222 2 7899999999999988765 9999986 442 1111100 001
Q ss_pred CCCh-hHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHH----------HhhCCCCcEEEeCCCCCCCcceEEEEecc
Q 043646 354 GGTP-QIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESAL----------GRILPNQNIQVLGNTSVKRQAILSFLVYS 421 (625)
Q Consensus 354 ~gt~-~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~----------~~L~~l~gv~v~~~~~~~~~~i~~f~~~~ 421 (625)
.++. ++.+.+ .+++.-. ...++...+....+.+++. +.|.++|++++..+.....+++++|.+ .
T Consensus 310 g~~~~~~~~~a~~~al~~~---~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l-~ 385 (464)
T 1ibj_A 310 GSGLAPFDCWLCLRGIKTM---ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT-G 385 (464)
T ss_dssp TCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEEC-S
T ss_pred CCCCCHHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEE-C
Confidence 1122 222211 1111110 0011222222233334443 345555667666654333567888876 2
Q ss_pred CCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC----CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 422 TTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC----ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~----~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
+. + ....+.+.| ..+||.++.|. .|. |.......+.... ....|+.++++|
T Consensus 386 ~~--~------------~~~~~~~~L-~~~gi~v~~G~~~sl~~~-p~~~~~~~~~~~~---------~~~~g~~~~~iR 440 (464)
T 1ibj_A 386 SV--A------------LSKHLVETT-KYFSIAVSFGSVKSLISM-PCFMSHASIPAEV---------REARGLTEDLVR 440 (464)
T ss_dssp CH--H------------HHHHHHHHC-SSSEECSCCCSSSCEEEC-TTTTTTCSCCSSS---------SSSSSCCTTCEE
T ss_pred CH--H------------HHHHHHHhc-CcceEeecCCCCceeeec-ccccccccCCHHH---------HHhcCCCcCeEE
Confidence 11 0 023466666 34799999886 232 1100000000000 001233468999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 498 ITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
||++. +|++.+++.|+++++..
T Consensus 441 lsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 441 ISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp EECCS----SCHHHHHHHHHHHHHSC
T ss_pred EEeCC----CCHHHHHHHHHHHHhhc
Confidence 99995 89999999999987653
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-23 Score=221.44 Aligned_cols=309 Identities=14% Similarity=0.081 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC---ceEEEEc-CCCCch
Q 043646 120 TKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE---RWVVFLG-PYEHHS 193 (625)
Q Consensus 120 ~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~-~~~h~s 193 (625)
.++.+.+.+++.+.+| ++++ +|++| +|+++++..++.++ +++|| +..|+++ .++|+.
T Consensus 78 ~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~t~al~~~~~~l---------------~~~gd~~~~~~vi~~~~p~~~~ 140 (417)
T 3g7q_A 78 TALLNALAVLLRETLGWDIEPQ-NIALT-NGSQSAFFYLFNLF---------------AGRRADGSTKKVLFPLAPEYIG 140 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHHHHHHHHH---------------SBC----CCBEEEESSCCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcc-cEEEe-CCcHHHHHHHHHHH---------------cCCCccCCcceEEEeCCCcccc
Confidence 3444444444444444 4444 89998 78999999998887 35654 1247876 788887
Q ss_pred hHHHHHH------cCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcC
Q 043646 194 NLLSWRQ------SLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYG 263 (625)
Q Consensus 194 ~~~~~~~------~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g 263 (625)
+...+.. .+..+..++.+. +..+|+++|+ ++ +++++|++++++||||.+.| +++|+++|++||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-----~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~ 213 (417)
T 3g7q_A 141 YADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG-----EETGMICVSRPTNPTGNVITDEELMKLDRLANQHN 213 (417)
T ss_dssp HHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred chhhccchhhhccccCcccccCCcccccccCHHHhc--cc-----cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcC
Confidence 7654432 133444454332 3457888887 44 57999999999999999988 888999999999
Q ss_pred CEEEEeccCcCCCccccCCCC--CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeecccccc
Q 043646 264 GFACFDFAASGPYVKINLRSR--NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEK 340 (625)
Q Consensus 264 ~~vivD~A~~~g~~~id~~~~--~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (625)
+++|+|++++.+......... ...+.++++.|++|+ ++|+ ++|+++.++++.. .+..
T Consensus 214 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~--~~~~----------------- 273 (417)
T 3g7q_A 214 IPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTIT--AIAN----------------- 273 (417)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHH--HHHH-----------------
T ss_pred CEEEEeCCCccccccccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHH--HHHH-----------------
Confidence 999999998753322211111 112567889999996 4443 5899888877621 1100
Q ss_pred ccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHHHhhCC-CC--cEEEeCCCCCCCc
Q 043646 341 DTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYE-----VIKKQEDVYIESALGRILP-NQ--NIQVLGNTSVKRQ 412 (625)
Q Consensus 341 ~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~-----~i~~~~~~l~~~l~~~L~~-l~--gv~v~~~~~~~~~ 412 (625)
.......+++.+.+.+ +..++ +..... .+.++.+++++++.+.|.+ ++ ++++..+. .
T Consensus 274 -------~~~~~~~~~~~~~~~~--~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~ 338 (417)
T 3g7q_A 274 -------MNGIISLAPGGMGPAM--MCEMI--KRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPE----G 338 (417)
T ss_dssp -------HHHHHCCCCCSHHHHH--HHHHH--HTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCC----B
T ss_pred -------hhcceeeCCCcHHHHH--HHHHH--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCC----c
Confidence 0111122223333221 12222 112211 1344445555555555544 34 46776553 3
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
+.+.+...+. .+++..++.+.|. ++||.+++|..|....... .+ ..
T Consensus 339 g~~~~~~~~~-------------~~~~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~-~~-------------------~~ 384 (417)
T 3g7q_A 339 AIFLWLWFKD-------------LPITTELLYQRLK-ARGVLMVPGHYFFPGLDKP-WP-------------------HT 384 (417)
T ss_dssp SSEEEEECTT-------------CSSCHHHHHHHHH-HTTEECEEGGGGCTTBSSC-CG-------------------GG
T ss_pred ceEEEEEcCC-------------CCCCHHHHHHHHH-HCCEEEECchhhCCCCccc-cc-------------------cC
Confidence 4455444432 1245778888884 5799999998775221000 00 01
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
++++|||++. +++++++++++|++++.+.
T Consensus 385 ~~~iRis~~~--~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 385 HQCMRMNYVP--EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp GGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 4799999985 9999999999999988764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=213.60 Aligned_cols=337 Identities=10% Similarity=-0.021 Sum_probs=211.1
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
|+|.....+.++.+.+++.+.... ....|....+..++.+.+.+++.+..+.+..++|++| +|+++++..++.+
T Consensus 48 ~~~~~~~~~~~~~v~~a~~~~~~~-----~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t-~g~~~al~~~~~~ 121 (418)
T 3rq1_A 48 IHDEEGNLVFLKTVKEEYLSLSDS-----EHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSIAT-AGGTGGIHHLIHN 121 (418)
T ss_dssp CBCTTSCBCCCHHHHHHHHTCCHH-----HHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEE-SHHHHHHHHHHHH
T ss_pred ccCCCCCccccHHHHHHHHHhccc-----ccCCCCCCCChHHHHHHHHHHHhcccCccccccEEEC-CchHHHHHHHHHH
Confidence 455556677888888887653311 0001111111234444444444444443322278898 7899999998887
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHHHhhhCCCCe-EE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD-DNGLLDIEALRSQLELYKAAKRPM-LG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~~~ld~~~L~~~l~~~~~~~~~~-lv 237 (625)
+ +++||+ |+++.+.|+.+...++..|++++.++++ +++.+|+++|++++++... ++++ ++
T Consensus 122 l---------------~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~v 183 (418)
T 3rq1_A 122 Y---------------TEPGDE--VLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA-KQTNVVV 183 (418)
T ss_dssp H---------------SCTTCE--EEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH-HCSEEEE
T ss_pred h---------------cCCCCE--EEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc-cCCCEEE
Confidence 7 578886 9999999999988889999999999985 4568999999999974111 1455 88
Q ss_pred EEecc-cCccccccCHHHH---HHHHH------HcCCEEEEeccCcCCC-cc---ccC-CCCCCCCCc---EEEEcCCCC
Q 043646 238 SFSAC-SNVTGIYSDTRSI---ARLLH------QYGGFACFDFAASGPY-VK---INL-RSRNIDGYD---AIFLATHKF 299 (625)
Q Consensus 238 ~~~~~-~n~TG~~~~l~~I---~~la~------~~g~~vivD~A~~~g~-~~---id~-~~~~~~~~D---~v~~S~hK~ 299 (625)
++++| +||||.+.|.+++ +++|+ +||+++|+|+++.... .. ..+ ........| +++.|++|.
T Consensus 184 i~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~ 263 (418)
T 3rq1_A 184 IFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKG 263 (418)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTT
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCC
Confidence 89999 9999999886655 55555 8999999999974211 11 011 110000223 677899999
Q ss_pred CCCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh-
Q 043646 300 LGGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY- 374 (625)
Q Consensus 300 lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~- 374 (625)
+|.|+ .+|++++ ++++.. .+.... .. ..+....+++..+.. ++..++ .+.
T Consensus 264 ~~~~G~r~G~~~~~~~~~~~~~--~~~~~~--------------------~~-~~~~~~~~~~~~~~~-a~~~~l-~~~~ 318 (418)
T 3rq1_A 264 FTMYGQRVGAMIGISDDEEIAD--EFFEVN--------------------KS-TSRATWSNICRPAMR-TMANIV-ADPA 318 (418)
T ss_dssp TTCCSSCCEEEEEEESSHHHHH--HHHHHH--------------------HH-HHHHHTSSCCHHHHH-HHHHHH-TCHH
T ss_pred CcCcCCcceEEEEEeCCHHHHH--HHHHHH--------------------HH-HHhhccCCCchHHHH-HHHHHh-CCHH
Confidence 97554 4799988 666521 110000 00 000011223333321 111221 110
Q ss_pred ------cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 375 ------IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 375 ------~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
...+.++++.+++++++.+.|.++ +++++.+ ..+.+.|.... +..++++.|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~l- 375 (418)
T 3rq1_A 319 KFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPY----RGGFFITIPTD-----------------SANAICEEL- 375 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC----CSSSEEEEECT-----------------THHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC----CceEEEEcCCC-----------------CHHHHHHHH-
Confidence 012345566777788888888776 6666544 34555443322 256788877
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++||.+++| ++++|||++ ..+++++++++++|++++++.
T Consensus 376 ~~~gi~v~~g----------------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 376 KKEHIYVIAL----------------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHTTEECEEC----------------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred HhCCEEEecC----------------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 4589999865 277999987 569999999999999988764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=209.78 Aligned_cols=314 Identities=16% Similarity=0.142 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
++......+++++++++++|.+ .++++++| ++++..++.++ +++||+ |+++...|+++.
T Consensus 76 ~r~~~p~~~~l~~~la~~~g~~---~~~~~~sG-~~Ai~~al~~l---------------~~~Gd~--Vi~~~~~y~~~~ 134 (414)
T 3ndn_A 76 SRYGNPTVSVFEERLRLIEGAP---AAFATASG-MAAVFTSLGAL---------------LGAGDR--LVAARSLFGSCF 134 (414)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS---EEEEESSH-HHHHHHHHHTT---------------CCTTCE--EEEESCCCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHCCC---cEEEECCH-HHHHHHHHHHH---------------hCCCCE--EEEcCCccchHH
Confidence 3334456788999999999963 56777566 55577766655 578885 899999999887
Q ss_pred HHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEecc
Q 043646 196 LSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 196 ~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A 271 (625)
..++. .|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|++
T Consensus 135 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~-----~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~ 204 (414)
T 3ndn_A 135 VVCSEILPRWGVQTVFVDGD-----DLSQWERALS-----VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNV 204 (414)
T ss_dssp HHHHTHHHHTTCEEEEECTT-----CHHHHHHHTS-----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECC
Confidence 66644 79999999876 8999999987 5899999999999999999999999999999999999999
Q ss_pred CcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchh
Q 043646 272 ASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 272 ~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
++.++....+ .. ++|+++.|++|++++++. .|+++++++... ..+...
T Consensus 205 ~~~~~~~~~~-~~---g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~-~~l~~~------------------------- 254 (414)
T 3ndn_A 205 FATPLLQQGF-PL---GVDVVVYSGTKHIDGQGRVLGGAILGDREYID-GPVQKL------------------------- 254 (414)
T ss_dssp TTHHHHCCCG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHT-THHHHH-------------------------
T ss_pred CcccccCCch-hc---CCCeEeccCCccccCCCCceEEEEEECHHHHH-HHHHHH-------------------------
Confidence 8866433333 22 789999999999986553 689888877621 011000
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcceE
Q 043646 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAIL 415 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i~ 415 (625)
.+...++.+.... ..++. .....+...++..+.++++.+.|.+.|.+. +..|.- ...++++
T Consensus 255 ~~~~g~~~~~~~a-~~~~~----~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l 329 (414)
T 3ndn_A 255 MRHTGPAMSAFNA-WVLLK----GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVV 329 (414)
T ss_dssp HHHHCCCCCHHHH-HHHHH----HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred HHHcCCCCCHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEE
Confidence 0111122222211 11111 112234445566677888889998888875 333321 1135677
Q ss_pred EEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCCC
Q 043646 416 SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGVK 492 (625)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~~ 492 (625)
+|.+..... ........+.+.| +.+++.+..|..|+. |.......+..+.-.+ .|+.
T Consensus 330 ~~~l~~~~~----------~~~~~~~~~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------~g~~ 389 (414)
T 3ndn_A 330 TFALDCPED----------VAKQRAFEVLDKM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAA---------IGLG 389 (414)
T ss_dssp EEEECSCGG----------GHHHHHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHH---------TTCC
T ss_pred EEEEcCCcc----------ccHHHHHHHHHhC-ccceEcCCCCCCCceeeCccccccccCCHHHHHh---------cCCC
Confidence 777743100 0000134566767 457888888876653 2222111221111111 3566
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 493 PGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 493 ~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+++||||++. |+++.+++.|++.
T Consensus 390 ~~~iRlsvG~----e~~~dli~dl~~a 412 (414)
T 3ndn_A 390 DGVVRISVGL----EDTDDLIADIDRA 412 (414)
T ss_dssp TTEEEEECCS----SCHHHHHHHHHHH
T ss_pred CCeEEEEeCc----CCHHHHHHHHHHh
Confidence 8999999986 4455555555544
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=211.50 Aligned_cols=339 Identities=12% Similarity=0.005 Sum_probs=209.9
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|+.++. ..++.|.+++.+.+.....++.. .+ ......+++++++++++.+.+ +|+|| +|+++
T Consensus 43 ~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggte 114 (429)
T 1s0a_A 43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG-GI-----THAPAIELCRKLVAMTPQPLE-CVFLA-DSGSV 114 (429)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCS-SE-----ECHHHHHHHHHHHHHSCTTCC-EEEEE-SSHHH
T ss_pred CEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc-cc-----CCHHHHHHHHHHHHhCCCCCC-EEEEe-CCHHH
Confidence 4688875543 35789999999888543222211 11 123356778889999997666 89999 56666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcC-CCCchhHHHHHHcC-------------CeEEEEecCC-----
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGP-YEHHSNLLSWRQSL-------------AEVVEIGLDD----- 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~~~~G-------------~~vv~v~~~~----- 212 (625)
++..++.++.... +. .-+|+++ |++.. .+|.+........| ..++.++.+.
T Consensus 115 a~~~ai~~~~~~~----~~----~g~~~~~--vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 1s0a_A 115 AVEVAMKMALQYW----QA----KGEARQR--FLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp HHHHHHHHHHHHH----HH----HTCCCCE--EEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred HHHHHHHHHHHHh----cc----cCCCCCe--EEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccc
Confidence 6776665431000 00 0024665 55555 45554443332222 1355666542
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCC
Q 043646 213 -NGLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRS 283 (625)
Q Consensus 213 -~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~ 283 (625)
.+.+|+++|++++++. .+++++|+++.+ +|+||.+.| +++|.++|++||+++|+|++|+ ++.... .+..
T Consensus 185 ~~~~~d~~~l~~~l~~~--~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~ 262 (429)
T 1s0a_A 185 EWDERDMVGFARLMAAH--RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262 (429)
T ss_dssp CCCGGGGHHHHHHHHHH--TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred cchHHHHHHHHHHHHhC--CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhh
Confidence 2358999999999742 236778888777 899998877 9999999999999999999987 433211 1111
Q ss_pred CCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh-cCCC--hhH
Q 043646 284 RNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGT--PQI 359 (625)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt--~~~ 359 (625)
.+ ..+|++++| |+|+++ .++|++++++++. +.+.+ ++. ..+ ..+| .+.
T Consensus 263 ~~-~~~d~~t~s--K~l~~G~~~iG~~~~~~~~~--~~l~~---~~~--------------------~~~~~~~t~~~n~ 314 (429)
T 1s0a_A 263 AE-IAPDILCLG--KALTGGTMTLSATLTTREVA--ETISN---GEA--------------------GCFMHGPTFMGNP 314 (429)
T ss_dssp GT-CCCSEEEEC--GGGGTSSSCCEEEEECHHHH--HHHHT---STT--------------------SSCSCCCTTTTCH
T ss_pred cC-CCCCEEEec--ccccCCCccceEEEeCHHHH--HHhhc---CCC--------------------cccccCCCCCCCH
Confidence 11 156887655 999876 6789999988762 22211 000 000 1112 233
Q ss_pred HHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 360 VQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 360 ~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
++. ..++++.+ +. +.+.++.+.+++++.+.|.++ |++..+.+ .+.++.+.+ +.
T Consensus 315 ~~~~a~~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~----~g~~~~~~~-~~------------ 372 (429)
T 1s0a_A 315 LACAAANASLAIL--ES---GDWQQQVADIEVQLREQLAPARDAEMVADVRV----LGAIGVVET-TH------------ 372 (429)
T ss_dssp HHHHHHHHHHHHH--HT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE----ETTEEEEEE-SS------------
T ss_pred HHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE----eeEEEEEEE-CC------------
Confidence 332 23444443 22 245677777888888888764 56653322 234444433 21
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
..+..++.+.|.+ +||.+++. .+++||++++.+|++|++++++
T Consensus 373 --~~~~~~l~~~l~~-~Gi~v~~~----------------------------------~~~iRis~~~~~t~e~i~~~~~ 415 (429)
T 1s0a_A 373 --PVNMAALQKFFVE-QGVWIRPF----------------------------------GKLIYLMPPYIILPQQLQRLTA 415 (429)
T ss_dssp --CBCHHHHHHHHHH-TTEECCCB----------------------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred --cccHHHHHHHHHH-CCCEEecc----------------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 1235678888864 79998741 2689999999999999999999
Q ss_pred HHHHHHHhh
Q 043646 515 ALEFIAAYG 523 (625)
Q Consensus 515 aL~~~~~~~ 523 (625)
+|++++...
T Consensus 416 ~l~~~~~~~ 424 (429)
T 1s0a_A 416 AVNRAVQDE 424 (429)
T ss_dssp HHHHHTSSG
T ss_pred HHHHHHHhh
Confidence 999887553
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-22 Score=211.41 Aligned_cols=327 Identities=12% Similarity=0.076 Sum_probs=207.4
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.++. +..++.+.+++.+.+... .+... .+ ..+..+++++++++++|. + +++||+ |+++
T Consensus 40 ~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g~--~-~v~~~~-gg~~ 108 (397)
T 2ord_A 40 NAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL-IHCSN-LF-----WNRPQMELAELLSKNTFG--G-KVFFAN-TGTE 108 (397)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-SCCCT-TS-----EEHHHHHHHHHHHHTTTS--C-EEEEES-SHHH
T ss_pred CEEEECCccccccccCCCCHHHHHHHHHHHHhc-ccCcc-cc-----CCHHHHHHHHHHHHhcCC--C-eEEEeC-CHHH
Confidence 357787543 456789999998887542 22211 11 234677899999999983 3 789984 5555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe------------EEEEecCCCCCCCHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE------------VVEIGLDDNGLLDIE 219 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~v~~~~~~~ld~~ 219 (625)
++..++.++... .. . -++++..+|+..+..|.+....++..|++ ++.++.+ |++
T Consensus 109 a~~~al~~~~~~-----~~---~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~ 174 (397)
T 2ord_A 109 ANEAAIKIARKY-----GK---K-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVE 174 (397)
T ss_dssp HHHHHHHHHHHH-----HH---H-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHH
T ss_pred HHHHHHHHHHHH-----hh---c-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHH
Confidence 566666654100 00 0 01432224445555666665566777765 7777753 899
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCcccc-c---cCHHHHHHHHHHcCCEEEEeccCc-CCCc--cccCCCCCCCCCcEE
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGI-Y---SDTRSIARLLHQYGGFACFDFAAS-GPYV--KINLRSRNIDGYDAI 292 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~-~---~~l~~I~~la~~~g~~vivD~A~~-~g~~--~id~~~~~~~~~D~v 292 (625)
+|+++++ +++++|++++++||||. + .++++|+++|++||+++|+|++++ ++.. +..+..++. .+|++
T Consensus 175 ~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d~~ 248 (397)
T 2ord_A 175 DLRRKMS-----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV-VPDVL 248 (397)
T ss_dssp HHHHHCC-----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSEE
T ss_pred HHHHHhh-----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCC-CCCee
Confidence 9999887 57999999999999999 3 578999999999999999999987 2211 121222211 36877
Q ss_pred EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHHHHHHHHHH
Q 043646 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMIRAALAFWV 371 (625)
Q Consensus 293 ~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~aal~~~~ 371 (625)
++ +|+++++.++|++++++++ . .+.+...+ ...+.+++. ..+.++++.+
T Consensus 249 s~--sK~~~~G~r~G~~~~~~~~--~-~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~- 298 (397)
T 2ord_A 249 TT--AKGLGGGVPIGAVIVNERA--N-VLEPGDHG------------------------TTFGGNPLACRAGVTVIKEL- 298 (397)
T ss_dssp EE--CGGGGTTSCCEEEEECSTT--C-CCCTTSSC------------------------CSSTTCHHHHHHHHHHHHHH-
T ss_pred ee--ccccCCCcCeEEEEEchHh--c-ccCCCCcC------------------------CCCCCCHHHHHHHHHHHHHH-
Confidence 44 6999855568999998876 3 33221100 001112222 2223344433
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 372 KEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+. +.+.++.+++++++.+.|+++ +.+....+ .+.++.+.+... .+..++.+.|
T Consensus 299 -~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~~~---------------~~~~~l~~~l 355 (397)
T 2ord_A 299 -TK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG----MGLMIGIQFREE---------------VSNREVATKC 355 (397)
T ss_dssp -TS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECTT---------------SCHHHHHHHH
T ss_pred -Hh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE----EeEEEEEEECCh---------------HHHHHHHHHH
Confidence 22 356667777788888777653 33322211 345566544221 2356788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ +||.+++|. ++++||++++.++++|+++++++|++++++
T Consensus 356 ~~-~gi~v~~~~---------------------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 356 FE-NKLLVVPAG---------------------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp HH-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HH-CCCEEccCC---------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHhh
Confidence 66 799998641 378999999899999999999999988753
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=212.80 Aligned_cols=304 Identities=13% Similarity=0.030 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHH--HHHHHHhcccccchhhhhhhhccCC---C-------CceEEEEcCCC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAI--KRLQEVMGITVPSIMRDKLITSLRD---E-------ERWVVFLGPYE 190 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal--~~l~~~l~~~~~~~~~~~~~~~l~~---g-------d~~~Vlv~~~~ 190 (625)
..++|+.++++++++++ +|++| +|+++++ ..++.++. ++ | |+..|++..+.
T Consensus 78 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~l~~~~~~l~---------------~~~~~g~~~~~~~d~~~Vl~~~p~ 140 (422)
T 3d6k_A 78 IADIRELWAEALGLPAD-LVVAQ-DGSSLNIMFDLISWSYT---------------WGNNDSSRPWSAEEKVKWLCPVPG 140 (422)
T ss_dssp CHHHHHHHHHHHTCCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------HCCTTCSSCGGGSSCCEEEEEESC
T ss_pred CHHHHHHHHHHhCCChh-HEEEe-cchHHHHHHHHHHHHhc---------------CcccccccccccCCCCEEEEeCCc
Confidence 45688999999998876 89998 6777765 66666652 22 2 22248899999
Q ss_pred CchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEE-EecccCccccccCHH---HHHHHHH-HcCCE
Q 043646 191 HHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS-FSACSNVTGIYSDTR---SIARLLH-QYGGF 265 (625)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~-~~~~~n~TG~~~~l~---~I~~la~-~~g~~ 265 (625)
|+.+...++..|++++.+|++.++ +|+++|++++++ .++++|+ +++++||||.+.+.+ +|+++|+ +||++
T Consensus 141 y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~ 215 (422)
T 3d6k_A 141 YDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKD----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFR 215 (422)
T ss_dssp CHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCE
T ss_pred cHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCE
Confidence 999988888899999999998765 899999999973 3688877 799999999999876 7778887 89999
Q ss_pred EEEeccCcC---CCcc---ccC----CCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEee
Q 043646 266 ACFDFAASG---PYVK---INL----RSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYV 334 (625)
Q Consensus 266 vivD~A~~~---g~~~---id~----~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~ 334 (625)
+|+|++++. .... ..+ +.....+.++++.|++|+ ++|+ .+|++++++++.. .+..
T Consensus 216 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~--~l~~----------- 281 (422)
T 3d6k_A 216 IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENIE--WYAS----------- 281 (422)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHH--HHHH-----------
T ss_pred EEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHHH--HHHH-----------
Confidence 999999873 1110 111 001112457888999998 5563 4899999877621 1110
Q ss_pred ccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCC
Q 043646 335 NAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEY----IGYEVIKKQEDVYIESALGRI----LPNQNIQVLGN 406 (625)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~----~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~ 406 (625)
.......+++.+.+. ++.+++ .+. ...+.++++.++.++++.+.| .+++++++..+
T Consensus 282 -------------~~~~~~~~~~~~~q~--a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 345 (422)
T 3d6k_A 282 -------------HANVRGIGPNKLNQL--AHAQFF-GDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP 345 (422)
T ss_dssp -------------HHHHHCSCCCHHHHH--HHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC
T ss_pred -------------HHHhhcCCCCHHHHH--HHHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC
Confidence 011122233333332 122222 110 112233444444444444444 34445776655
Q ss_pred CCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHH
Q 043646 407 TSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQ 485 (625)
Q Consensus 407 ~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 485 (625)
. .+.+.+...+.. +..++.+.| .++||.+++ |.+|......
T Consensus 346 ~----~g~~~~~~~~~~---------------~~~~~~~~l-~~~gV~v~~~g~~f~~~~~~------------------ 387 (422)
T 3d6k_A 346 T----GGYFISVDVVPG---------------TASRVVELA-KEAGIALTGAGSSFPLHNDP------------------ 387 (422)
T ss_dssp S----BSSCEEEEESTT---------------CHHHHHHHH-HHTTEECCCTTTTSGGGCCT------------------
T ss_pred C----cceEEEEECCCC---------------CHHHHHHHH-HHCCeEEEcCccccCCCCCC------------------
Confidence 2 344444444321 245677777 458999998 4445311000
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 486 KGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 486 ~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++|||++. ++++++++++++|++++.+.
T Consensus 388 ------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 388 ------NNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp ------TSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 24899999987 89999999999999987653
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=211.92 Aligned_cols=385 Identities=12% Similarity=0.073 Sum_probs=225.7
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCC---cchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 36 CSEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASG---RSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~---~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
+..++...+............++.... . ..+... ....|+|+.+.. +.++.+.+++... . . .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-~~~~l~---~~~~ylD~~~~~~~~~~~~~~~~a~~~~------~--~-~ 70 (456)
T 2ez2_A 6 EPFRIKSVETVSMIPRDERLKKMQEAG--Y-NTFLLN---SKDIYIDLLTDSGTNAMSDKQWAGMMMG------D--E-A 70 (456)
T ss_dssp CSSCCCCCCCCCCCCHHHHHHHHHHTT--T-CGGGSC---GGGCSEECSCSSSCCCCCHHHHHHHTTC------C--C-C
T ss_pred CCeeeeeecccCCCCHHHHHHHHHHCC--C-CcccCC---cccceeeeccccCCccCCHHHHHHhhcc------h--h-h
Confidence 344444454554555566666665432 1 122222 234688885543 4556777776411 1 0 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCC-
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEH- 191 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h- 191 (625)
+.. .....++++.+++++|.+ ++++|++|+ +++..++.++ +++|| +++..+|
T Consensus 71 y~~----~~~~~~l~~~la~~~~~~---~~~~~~~gt-~a~~~al~~l---------------~~~gd----i~~~~~~~ 123 (456)
T 2ez2_A 71 YAG----SENFYHLERTVQELFGFK---HIVPTHQGR-GAENLLSQLA---------------IKPGQ----YVAGNMYF 123 (456)
T ss_dssp SSS----CHHHHHHHHHHHHHHCCS---EEEEESSHH-HHHHHHHHHH---------------CCTTC----EEEESSCC
T ss_pred ccc----ChhHHHHHHHHHHHhCCC---cEEEeCCcH-HHHHHHHHHh---------------CCCCC----Eecccccc
Confidence 111 223567889999999874 688885555 5677776665 46777 4445566
Q ss_pred chhHHHHHHcCCeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccC-ccccccC---HHHHHH
Q 043646 192 HSNLLSWRQSLAEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSN-VTGIYSD---TRSIAR 257 (625)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n-~TG~~~~---l~~I~~ 257 (625)
.++...++..|++++.++++. ++.+|+++|++++++.. ..++++|++++++| +||.+.| +++|++
T Consensus 124 ~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t-~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~ 202 (456)
T 2ez2_A 124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG-AENIAYICLAVTVNLAGGQPVSMANMRAVRE 202 (456)
T ss_dssp HHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHH
T ss_pred chhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhcc-ccceeEEEEeccCCCCCCccCCHHHHHHHHH
Confidence 777778888999999998863 25789999999998420 01248999999998 9999887 999999
Q ss_pred HHHHcCCEEEEeccCcCC-----------CccccCC----CCCCCCCcEEEEcCCCCCCCCCCceEEEE-eccccccCCC
Q 043646 258 LLHQYGGFACFDFAASGP-----------YVKINLR----SRNIDGYDAIFLATHKFLGGPGTPGILLI-SKALYQLGSS 321 (625)
Q Consensus 258 la~~~g~~vivD~A~~~g-----------~~~id~~----~~~~~~~D~v~~S~hK~lggp~g~G~l~v-~~~~~~l~~~ 321 (625)
+|++||+++|+|++|+.| +....+. ... ...|++++|+||+++.| ..|+++. ++++.. .+
T Consensus 203 la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~--~~ 278 (456)
T 2ez2_A 203 LTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMF-SYADGCTMSGKKDCLVN-IGGFLCMNDDEMFS--SA 278 (456)
T ss_dssp HHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHH-TTCSEEEEETTTTTCCS-SCEEEEESCHHHHH--HH
T ss_pred HHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhc-ccCCEEEEeCcccCCCC-ceeEEEECCHHHHH--HH
Confidence 999999999999998864 2111110 000 14689888999997644 3588888 455521 11
Q ss_pred CCcc-cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 322 PPST-CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 322 ~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
.+.. .+.+. . ...|. +...+..+++... +... +...++.+.+.+++.+.|.+. +
T Consensus 279 ~~~~~~~~~~------------------~--~~~~~-~~~~~~a~a~~~~--~~~~-~~~~~~~~~~~~~l~~~L~~~-g 333 (456)
T 2ez2_A 279 KELVVVYEGM------------------P--SYGGL-AGRDMEAMAIGLR--EAMQ-YEYIEHRVKQVRYLGDKLKAA-G 333 (456)
T ss_dssp HHHHHHHTCC------------------T--TTTTC-CHHHHHHHHHHHH--HHTC-HHHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHhhccCc------------------c--cccCc-chhHHHHHHHHHH--HHhH-HHHHHHHHHHHHHHHHHHhcC-C
Confidence 1100 00000 0 00111 2122211133322 2222 445566677788888888774 6
Q ss_pred EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHH-----HHHhhhhcCeeeec-CCCCCchhhHhhhcCCh
Q 043646 401 IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFV-----ATLFNDLFGIQARG-GCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 401 v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v-----~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~ 474 (625)
+++..+. . +.+.+....... .+++..++ ++.|.+++||.+.+ |.+|.+. +...+.+
T Consensus 334 ~~~~~p~---~-~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~~g~~- 395 (456)
T 2ez2_A 334 VPIVEPV---G-GHAVFLDARRFC-----------EHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNVTGEH- 395 (456)
T ss_dssp CCBCSSC---C-SSEEEEEHHHHT-----------TTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTTTCSB-
T ss_pred CccccCC---C-ceEEEEEhHHhc-----------CCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Ccccccc-
Confidence 6665543 2 333333221000 00112233 66664557998654 4433110 0000000
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEecCCC-CCHHHHHHHHHHHHHHHHhhh
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRITFPYY-MSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis~~~~-~t~edid~ll~aL~~~~~~~~ 524 (625)
.....+++||+++.+ ++++|+++++++|++++.+..
T Consensus 396 --------------~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 396 --------------HRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp --------------CCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred --------------ccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 000137899999877 899999999999999987743
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=221.50 Aligned_cols=386 Identities=15% Similarity=0.076 Sum_probs=220.5
Q ss_pred CCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHH
Q 043646 46 PHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHE 125 (625)
Q Consensus 46 ~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~ 125 (625)
...........+++... . ..+....| ..|+|+.+.... +.+.+++.+.+.. + .. .|... ....+
T Consensus 17 ~~~~~~~~~~~~~~~~g--~-~~~~~~~g---~~ylD~~~~~~~-~~v~~a~~~~~~~--~--~~-~y~~~----~~~~~ 80 (467)
T 1ax4_A 17 IRVPSREEREAALKEAG--Y-NPFLLPSS---AVYIDLLTDSGT-NAMSDHQWAAMIT--G--DE-AYAGS----RNYYD 80 (467)
T ss_dssp CCCCCHHHHHHHHHHTT--S-CGGGSCGG---GCSEECSCSSSC-CCEEHHHHHHHHT--C--CC-CSSSC----HHHHH
T ss_pred ccccchhHHHHHHHhcC--c-CcccCCCC---ceeeecccCcCC-HHHHHHHHHHHhh--c--cc-ccccC----ccHHH
Confidence 33445566666666532 1 22333323 459999777765 5666666665421 0 00 11111 23556
Q ss_pred HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccC----CCCc-eEEEEcCCCCchhHHHHHH
Q 043646 126 ASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLR----DEER-WVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 126 ~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~----~gd~-~~Vlv~~~~h~s~~~~~~~ 200 (625)
++++++++++.+ +++||+ |.++++..++.++ +. +||+ ..|+++.+.|.+....+..
T Consensus 81 l~~~la~~~~~~---~v~~t~-ggt~A~~~al~~~---------------~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~ 141 (467)
T 1ax4_A 81 LKDKAKELFNYD---YIIPAH-QGRGAENILFPVL---------------LKYKQKEGKAKNPVFISNFHFDTTAAHVEL 141 (467)
T ss_dssp HHHHHHHHHCCC---EEEEES-SHHHHHHHHHHHH---------------HHHHHHTTCCSSCEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCC---cEEEcC-CcHHHHHHHHHHH---------------HHhhccCCCccceEEEeccccchhhHHHhc
Confidence 889999999872 799995 4455666666655 23 6763 1155563333555666777
Q ss_pred cCCeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---HHHHHHHHHHcCCEE
Q 043646 201 SLAEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---TRSIARLLHQYGGFA 266 (625)
Q Consensus 201 ~G~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l~~I~~la~~~g~~v 266 (625)
.|++++.++.+. ++.+|+++|++++++.. .+++++|++++++|+| |.+.+ +++|+++|++||+++
T Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~-~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~l 220 (467)
T 1ax4_A 142 NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG-ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFV 220 (467)
T ss_dssp TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred cCCceecccccccccccccCCcccccCHHHHHHHHHhcC-CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEE
Confidence 899888775421 45789999999998421 1268999999999999 77754 678999999999999
Q ss_pred EEeccCcC-----------CCccccCCCCC---CCCCcEEEEcCCCCCCCCCCceEEEEe-c-cccccCCCCCcc--cCC
Q 043646 267 CFDFAASG-----------PYVKINLRSRN---IDGYDAIFLATHKFLGGPGTPGILLIS-K-ALYQLGSSPPST--CGG 328 (625)
Q Consensus 267 ivD~A~~~-----------g~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~l~v~-~-~~~~l~~~~p~~--~gg 328 (625)
|+|++++. ++..+++..+. ...+|++++|+||++|.|.| |+++.+ + ++. +.+.... .++
T Consensus 221 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~--~~~~~~~~~~~~ 297 (467)
T 1ax4_A 221 VMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIF--TLARQRCVPMEG 297 (467)
T ss_dssp EEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHH--HHHHHHHHHHTC
T ss_pred EEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHH--HHHHhhcccccc
Confidence 99998765 33333222110 01478999999999987645 677776 4 542 1111000 010
Q ss_pred ceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC
Q 043646 329 GTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS 408 (625)
Q Consensus 329 g~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~ 408 (625)
. ...++.+...+...+..+. .....+.+. +...+++++.+.|.+ +++.+..+.
T Consensus 298 ~----------------------~~~~~~~~~~~~a~~~~l~--~~~~~~~~~-~~~~~~~~l~~~L~~-~~~~~~~~~- 350 (467)
T 1ax4_A 298 F----------------------VTYGGLAGRDMAAMVQGLE--EGTEEEYLH-YRIGQVKYLGDRLRE-AGIPIQYPT- 350 (467)
T ss_dssp S----------------------TTTTTCCHHHHHHHHHHHH--HTTCHHHHH-HHHHHHHHHHHHHHH-TTCCBCSSC-
T ss_pred c----------------------cccCCccchHHHHHHHHHH--HhhhhhHHH-HHHHHHHHHHHHHHh-CCCCcccCC-
Confidence 0 0123333332221111111 111112232 333557778888876 467665543
Q ss_pred CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeec-CCCCCchhhHhhhcCChhhHHHHHHHHHhC
Q 043646 409 VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARG-GCACAGPYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 409 ~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
++..+.+.+ ...... ....+++..++++.|.+++||.+++ |.++.+.. .. .+.+.
T Consensus 351 --~~~~~~~~~-~~~~~~------~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~-~~-~g~~~------------- 406 (467)
T 1ax4_A 351 --GGHAVFVDC-KKLVPQ------IPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD-PA-TGEQK------------- 406 (467)
T ss_dssp --CSSEEEEES-TTTCTT------SCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-TT-TCSBC-------------
T ss_pred --CceEEEEeh-hhhccc------cccCCCCHHHHHHHHHHhcCceeeecCccccccc-cc-ccccc-------------
Confidence 233333331 000000 0001233567888884557999987 54321000 00 00000
Q ss_pred CCCCCCcEEEEecCC-CCCHHHHHHHHHHHHHHHHhh
Q 043646 488 YLGVKPGWTRITFPY-YMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 488 ~~g~~~g~iRis~~~-~~t~edid~ll~aL~~~~~~~ 523 (625)
-...+++||+++. .+|++|+++++++|++++.+.
T Consensus 407 --~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 407 --HADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp --CCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred --ccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 0013799999984 489999999999999988764
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=211.11 Aligned_cols=326 Identities=17% Similarity=0.140 Sum_probs=198.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+++++++++++|.+. .+++ ++|+ +++..++.++ +++||+ |+++...|++.
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~~--~v~~-~sG~-~Ai~~al~al---------------~~~Gd~--Vi~~~~~y~~~ 134 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGALG--VLAL-GSGM-AAISTAILTL---------------ARAGDS--VVTTDRLFGHT 134 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSE--EEEE-SCHH-HHHHHHHHHH---------------CCTTCE--EEEETTCCHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHCCCc--EEEE-CCHH-HHHHHHHHHH---------------hCCCCE--EEEcCCCchhH
Confidence 444445667889999999999853 3445 4786 6677776665 578885 99999999988
Q ss_pred HHH----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLS----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
... ++..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|+++|+++|+|+
T Consensus 135 ~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~-----~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~ 204 (430)
T 3ri6_A 135 LSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACD-----ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDT 204 (430)
T ss_dssp HHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 773 45679999999876 8999999987 589999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC--CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG--TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+++.++. .+.... ++|+++.|++|++++++ -.|+++.+.... +... ..+.. ....+. ...+....
T Consensus 205 a~~~~~~-~~~~~~---g~div~~S~sK~l~g~g~~~gG~vv~~~~~~-~~~~-~~~~~-----l~~~~g--~~~~i~~~ 271 (430)
T 3ri6_A 205 TMTPPYL-LEAKRL---GVDIEVLSSTKFISGGGTSVGGVLIDHGLFE-WKSL-PSLAP-----YYAKAG--PMAFLYKA 271 (430)
T ss_dssp TTSCTTT-CCGGGG---TCSEEEEECCCEEETTEEECCEEEEECSCSC-GGGS-TTTHH-----HHHHHG--GGHHHHHH
T ss_pred CCccccc-CChHHc---CCEEEEECCcccccCCCCceEEEEEECChHH-hhhc-cchhh-----hhhhhc--hhhHHHHH
Confidence 9998765 233333 78999999999999773 235555443320 0000 00000 000000 00000000
Q ss_pred ---hhhhcCCChhHH-HHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-C-----------C
Q 043646 349 ---EERENGGTPQIV-QMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-V-----------K 410 (625)
Q Consensus 349 ---~~~~~~gt~~~~-~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-~-----------~ 410 (625)
..+...++.+.. +.+ ..+++. .....++..+++.++.+.|.+.|+++ |..|.- . .
T Consensus 272 ~~~~~~~~g~~~~~~~a~l~l~~l~~-------l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g 344 (430)
T 3ri6_A 272 RKEVFQNLGPSLSPHNAYLQSLGLET-------MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFR 344 (430)
T ss_dssp HHTHHHHHCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCC
Confidence 001111222211 111 111111 23344556677889999999999886 444421 1 1
Q ss_pred Ccc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHh
Q 043646 411 RQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQK 486 (625)
Q Consensus 411 ~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~ 486 (625)
.++ +++|.+.... ....+.+.| +.+++.+..|..++. |....+..++.+.-
T Consensus 345 ~Gg~~lsf~l~~~~---------------~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~--------- 399 (430)
T 3ri6_A 345 YAGSILTFELESKE---------------ASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALNSHEER--------- 399 (430)
T ss_dssp SCCSEEEEECSSHH---------------HHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC------------------
T ss_pred CCceEEEEEECCHH---------------HHHHHHHhC-CcceecCCCCCCCceeeCCcccccccCCHHHH---------
Confidence 256 8888875210 134556666 456777777765542 11111111111100
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 487 GYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 487 g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.-.|+.+++||||++. |+++.+++.|++.+
T Consensus 400 ~~~g~~~~liRlsvG~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 400 LKLEISPAMMRLSVGI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CGGGSCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEecc----CCHHHHHHHHHHhh
Confidence 0135678999999985 55566666665543
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-22 Score=218.69 Aligned_cols=361 Identities=11% Similarity=0.060 Sum_probs=219.9
Q ss_pred chHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--C--CCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 89 SLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--G--QADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~--~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.++.+++++.+.+.. .|..|.. ...++.+.+.+++++.++. . ++++|++| +|+++++..++.++...
T Consensus 116 ~~~~~v~a~~~~~~~~~y~~~~~-------g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t-~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 116 NRDKVVAEWVNGAVANNYPVPDR-------CLVNTEKIINYFLQELSYKDANLAEQTDLFPT-EGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp CHHHHHHHHHHHHHTCSCCSSSS-------CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEE-EHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEE-CCHHHHHHHHHHHhhhh
Confidence 456666666665532 2222222 2345556666666555232 2 22379998 89999999988863100
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC----CCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD----DNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~----~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
..+++||+ |+++.++|+++...++..|++++.++++ .++.+|+++|+++++ +++++|++
T Consensus 188 ----------~l~~~gd~--Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~-----~~~k~v~l 250 (533)
T 3f6t_A 188 ----------HLLKKGDK--IAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD-----PSIKALIV 250 (533)
T ss_dssp ----------TSSCTTCE--EEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC-----TTEEEEEE
T ss_pred ----------hccCCcCE--EEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC-----CCCeEEEE
Confidence 01578885 9999999999988888889999999985 356789999999887 68999999
Q ss_pred ecccCccccccCHH---HHHHHHH-HcCCEEEEeccCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEec
Q 043646 240 SACSNVTGIYSDTR---SIARLLH-QYGGFACFDFAASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISK 313 (625)
Q Consensus 240 ~~~~n~TG~~~~l~---~I~~la~-~~g~~vivD~A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~ 313 (625)
++++||||.+.+.+ +|+++|+ +||+++|+|++++.... ...+... ..+.++++.|++|.+|.|+ .+|++++++
T Consensus 251 ~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 329 (533)
T 3f6t_A 251 VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSV-VPYNTMLVYSYSKLFGCTGWRLGVIALNE 329 (533)
T ss_dssp ESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHH-SGGGEEEEEESHHHHTCGGGCEEEEEEES
T ss_pred eCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhc-CCCCEEEEecCcccCCCcccceEEEEECc
Confidence 99999999998876 7888888 58999999999773221 1111111 1134688999999998443 289999988
Q ss_pred c-----ccccCCCCCcc-------cCCceEEeeccccccccccc-------cchhhhhcCCChhHHHHHHH--HHHHHH-
Q 043646 314 A-----LYQLGSSPPST-------CGGGTVNYVNAFDEKDTLYL-------EDIEERENGGTPQIVQMIRA--ALAFWV- 371 (625)
Q Consensus 314 ~-----~~~l~~~~p~~-------~ggg~v~~~~~~~~~~~~~~-------~~~~~~~~~gt~~~~~~~~a--al~~~~- 371 (625)
+ + +..+.+.. ++.-+. ......+. .........+.+...+.+.+ ++..+.
T Consensus 330 ~~~~~~l--i~~l~~~~~~~~~~~~~~~~~------~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~ 401 (533)
T 3f6t_A 330 KNVFDDN--IAHLDKVELRQLHKRYSSVVL------DPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLT 401 (533)
T ss_dssp SCHHHHH--HHTSCHHHHHHHHHHHHTTCS------CGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHH--HHhcchhhHHHHHhhhhcccc------CcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhh
Confidence 7 3 12221100 000000 00000000 00011112233333333222 233321
Q ss_pred ----H-hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC--------CC
Q 043646 372 ----K-EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK--------PL 438 (625)
Q Consensus 372 ----~-~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~--------~l 438 (625)
. .....+.++++.+..++++.+.|. + ++.+..+ ..+.+.+.-.+... ....+. ..
T Consensus 402 ~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~----~~g~~~~~~l~~~~------~~~~g~~~~~~~~~~~ 469 (533)
T 3f6t_A 402 STNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDT----NTHYYSLIDIYRLA------EKIYGKEFRDYLTNNF 469 (533)
T ss_dssp CBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTT----BCCSEEEEEHHHHH------HHHHCHHHHHHHHHHC
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCC----CceEEEEEehHhhh------hhccchHHHHHhhccC
Confidence 0 111245667777888889999996 5 3443333 44555554432100 000000 02
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+..+++..|.+++||.+.+|..|..+ ++++|||++. .++++++.++++|++
T Consensus 470 ~~~~~~~~ll~~~GV~v~pg~~f~~~----------------------------~~~iRls~a~-~~~e~i~~~i~~L~~ 520 (533)
T 3f6t_A 470 EQVDFLLKLAEKNGVVLVDGVGFGAK----------------------------PGELRVSQAN-LPTEDYALIGKQVLE 520 (533)
T ss_dssp CHHHHHHHHHHHTTSSSCTTEEECSS----------------------------TTEEEEESSS-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEeCCcccCCC----------------------------CCEEEEEEee-CCHHHHHHHHHHHHH
Confidence 34466666667789999999888632 4899999964 578999999999999
Q ss_pred HHHhhh
Q 043646 519 IAAYGH 524 (625)
Q Consensus 519 ~~~~~~ 524 (625)
++.+..
T Consensus 521 ~l~~~~ 526 (533)
T 3f6t_A 521 LLKEYY 526 (533)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-24 Score=231.93 Aligned_cols=331 Identities=14% Similarity=0.085 Sum_probs=216.0
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--GGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
++++.+.+++.+.+.. ... .| .....++.+++.+++++.+| .+++ +|++| +|+++++..++.++
T Consensus 44 ~~~~~v~~a~~~~~~~----~~~-~y--~~~~~~l~~~la~~l~~~~g~~~~~~-~v~~~-~g~~~a~~~~~~~~----- 109 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQ----LVY-GY--TYASDELLQAVLDWEKSEHQYSFDKE-DIVFV-EGVVPAISIAIQAF----- 109 (392)
Confidence 3466788888776632 111 11 11134455555555555566 4444 78888 78888888887776
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-C--CCCCHHHHHHHHHHhhhCCCCeEEEEecc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-N--GLLDIEALRSQLELYKAAKRPMLGSFSAC 242 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~--~~ld~~~L~~~l~~~~~~~~~~lv~~~~~ 242 (625)
+++||+ |++..+.|++....++..|++++.++.++ + ..+|+++|++++++ +++++|+++++
T Consensus 110 ----------~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~----~~~~~v~~~~~ 173 (392)
T 3b1d_A 110 ----------TKEGEA--VLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE----NDVKLYLLCNP 173 (392)
Confidence 467775 88999999998888888899999998853 2 35899999999873 36889999999
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC--CCCcEEEEcCCCCCCCCC-CceEEEEe
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI--DGYDAIFLATHKFLGGPG-TPGILLIS 312 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~--~~~D~v~~S~hK~lggp~-g~G~l~v~ 312 (625)
+||||.+.+ +++|+++|++||+++|+|++++.... ...+..+.. .+.++++.|++|++|.|+ .+|+++++
T Consensus 174 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 253 (392)
T 3b1d_A 174 HNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIE 253 (392)
Confidence 999999976 88999999999999999999875321 122222211 244678889999997444 47999987
Q ss_pred cc-ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 313 KA-LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 313 ~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++ + .+.+.... ..+..++++..... ++.+.+.......+.+.++.+.+++++
T Consensus 254 ~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~~-a~~~~l~~~~~~~~~~~~~~~~~~~~l 306 (392)
T 3b1d_A 254 NPTL--CAQFKHQQ------------------------LVNNHHEVSSLGYI-ATETAYRYGKPWLVALKAVLEENIQFA 306 (392)
Confidence 54 5 22222111 00111222222211 111111111223556677777888888
Q ss_pred HHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhh
Q 043646 392 LGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLL 470 (625)
Q Consensus 392 ~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l 470 (625)
.+.|.+ +|++++..+. ++.+.+...+.. +.+..++.+.|.+++||.+++|..|...
T Consensus 307 ~~~l~~~~~~~~~~~~~----~~~~~~i~~~~~-------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~------ 363 (392)
T 3b1d_A 307 VEYFAQEAPRLKVMKPQ----GTYLIWLDFSDY-------------GLTDDALFTLLHDQAKVILNRGSDYGSE------ 363 (392)
Confidence 888887 7888776553 344433322210 1234567788865689999988766410
Q ss_pred cCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 471 AFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 471 ~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.++++||+++. ++++++.++++|++++.
T Consensus 364 ---------------------~~~~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 364 ---------------------GELHARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 24789999874 57999999999987653
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-20 Score=200.92 Aligned_cols=343 Identities=10% Similarity=0.046 Sum_probs=206.9
Q ss_pred EeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
.|+|..+ .+..++.+.+++.+.+... .+... . +.......++++.|+++++.+.+++|+|| +|++++
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-~----~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~~~a 114 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-SHTCF-Q----VLAYEPYLELCEIMNQKVPGDFAKKTLLV-TTGSEA 114 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-SCCCT-T----TEECHHHHHHHHHHHHHSSCSSCEEEEEE-SSHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhC-CCccc-c----ccCCHHHHHHHHHHHHhCCcccccEEEEe-CchHHH
Confidence 4677642 3446789999998887542 22111 1 11234567799999999942332489998 677777
Q ss_pred HHHHHH---HhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-------------EEEEecCC----
Q 043646 153 IKRLQE---VMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-------------VVEIGLDD---- 212 (625)
Q Consensus 153 l~~l~~---~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-------------vv~v~~~~---- 212 (625)
+..++. .+ .+++ + +|+..+..|.+....+...|.+ ++.++++.
T Consensus 115 ~~~~~~~a~~~---------------~~~~-~-vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~ 177 (426)
T 1sff_A 115 VENAVKIARAA---------------TKRS-G-TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG 177 (426)
T ss_dssp HHHHHHHHHHH---------------HTCC-E-EEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGT
T ss_pred HHHHHHHHHHh---------------hCCC-e-EEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccc
Confidence 777766 33 2444 3 3444555555555556655543 77788753
Q ss_pred -CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCC
Q 043646 213 -NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSR 284 (625)
Q Consensus 213 -~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~ 284 (625)
++.+|+++|++++++....+++++|+++...+.||.+.+ +++|.++|++||+++|+|++++ ++... ..+...
T Consensus 178 ~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~ 257 (426)
T 1sff_A 178 ISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQM 257 (426)
T ss_dssp BCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGT
T ss_pred cchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhc
Confidence 124789999999973111135778887544333998777 9999999999999999999988 22211 111111
Q ss_pred CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHH
Q 043646 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMI 363 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~ 363 (625)
+ ..+|++ |++|++++...+|++++++++ ++.+.+...+ ...+.+++. ..+
T Consensus 258 ~-~~~di~--s~sK~~~~GlriG~~~~~~~~--~~~l~~~~~~------------------------~~~~~~~~~~~a~ 308 (426)
T 1sff_A 258 G-VAPDLT--TFAKSIAGGFPLAGVTGRAEV--MDAVAPGGLG------------------------GTYAGNPIACVAA 308 (426)
T ss_dssp T-SCCSEE--EECGGGGTSSCCEEEEEEHHH--HTTSCTTSBC------------------------CSSSSCHHHHHHH
T ss_pred C-CCCCEE--EEcccccCCCceEEEEEcHHH--HhhhccCCcC------------------------cCCCCCHHHHHHH
Confidence 1 146766 556999842237999999887 3333321100 011122222 223
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.++++++. . +.+.++.+.+++++.+.|.+ ++.+....+ .+.++.+.+...... ....+.+
T Consensus 309 ~aal~~~~--~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-------~~~~~~~ 372 (426)
T 1sff_A 309 LEVLKVFE--Q---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG----LGAMIAIELFEDGDH-------NKPDAKL 372 (426)
T ss_dssp HHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE----ETTEEEEEEBGGGCT-------TSBCHHH
T ss_pred HHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEecCccc-------cCCChHH
Confidence 34555542 2 13455666677777776654 444433322 245555554321000 0000123
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..++.+.|.+ +||.+++|..+ ++++||++++.++++|+++++++|+++
T Consensus 373 ~~~l~~~l~~-~gi~v~~~~~~-------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 373 TAEIVARARD-KGLILLSCGPY-------------------------------YNVLRILVPLTIEDAQIRQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHH-TTEECEEESTT-------------------------------SCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCcEEecCCCC-------------------------------CCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 4578888865 69999976532 388999999999999999999999998
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 421 l~~ 423 (426)
T 1sff_A 421 FDE 423 (426)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=211.87 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=146.5
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC------CCCcEEE--eCChHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG------QADAIIF--CGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~------~~~~vif--t~sGtt 150 (625)
.|+|+.+..+..+.+.+++.+.... ..+.+ |....+ ..++|+.++++++.. ++ +|++ | +|++
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~---Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t-~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAMIAAK-KMDKE---YLPIAG----LADFTRASAELALGENSEAFKSG-RYVTVQG-ISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHT-TCCCC---CCCTTC----CHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHHH
T ss_pred eEECCCCCEechHHHHHHHHHhccc-ccccC---CCCCCC----CHHHHHHHHHHhcCCCccccccC-ceEEEec-Ccch
Confidence 4788888888778888888766532 11221 111111 334666666666533 44 7876 8 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELY 228 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~ 228 (625)
+++..++.++.. .+++||+ |+++.+.|..+...++..|++++.+|++. ++.+|++++++.+.+
T Consensus 107 ~al~~~~~~l~~------------~~~~gd~--Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~- 171 (401)
T 7aat_A 107 GSLRVGANFLQR------------FFKFSRD--VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK- 171 (401)
T ss_dssp HHHHHHHHHHHH------------HCTTCCE--EEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-
T ss_pred HHHHHHHHHHHH------------hccCCCE--EEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh-
Confidence 888887765510 1367885 99999999999888999999999999853 678999999888874
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC-ccc--c---CCCC-CCCCCcEEEEcCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VKI--N---LRSR-NIDGYDAIFLATHK 298 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-~~i--d---~~~~-~~~~~D~v~~S~hK 298 (625)
..++++++++++++||||.+.+ +++|+++|++||+++++|+++.... ... + +... ......+++.|++|
T Consensus 172 -~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 250 (401)
T 7aat_A 172 -IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp -SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred -CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCc
Confidence 2357899999999999998766 7788999999999999999965322 211 1 1100 11244678899999
Q ss_pred CCCCCC-CceEEEE
Q 043646 299 FLGGPG-TPGILLI 311 (625)
Q Consensus 299 ~lggp~-g~G~l~v 311 (625)
.||.|+ .+|++++
T Consensus 251 ~~~~~G~RiG~l~~ 264 (401)
T 7aat_A 251 NMGLYGERAGAFTV 264 (401)
T ss_dssp TSCCGGGCEEEEEE
T ss_pred ccccccCceEEEEE
Confidence 997443 3799887
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=202.73 Aligned_cols=331 Identities=9% Similarity=0.038 Sum_probs=207.1
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.+.+++.+.+... .+... .+ ..+...++++++++++|. + +++|| +|+++
T Consensus 57 ~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g~--~-~v~~~-~ggte 125 (420)
T 2pb2_A 57 KEYIDFAGGIAVTALGHCHPALVEALKSQGETL-WHTSN-VF-----TNEPALRLGRKLIDATFA--E-RVLFM-NSGTE 125 (420)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC-CCCCT-TS-----CCHHHHHHHHHHHHHSSC--S-EEEEE-SSHHH
T ss_pred CEEEEccccccccccCCCCHHHHHHHHHHHHhc-ccccC-cc-----CCHHHHHHHHHHHhhCCC--C-eEEEe-CCHHH
Confidence 358887543 456789999999988643 22111 11 235677899999999983 3 79998 55556
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHHcCCe------------EEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQSLAE------------VVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~~G~~------------vv~v~~~~~~~ld~ 218 (625)
++..++.++.... +. . -.+|+. .|++. +..|.+....+...|.+ ++.++.+ |+
T Consensus 126 A~~~al~~~~~~~----~~---~-~~~g~~-~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~ 191 (420)
T 2pb2_A 126 ANETAFKLARHYA----CV---R-HSPFKT-KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DL 191 (420)
T ss_dssp HHHHHHHHHHHHH----HH---H-TCTTCC-EEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CH
T ss_pred HHHHHHHHHHHHh----hh---c-cCCCCC-EEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CH
Confidence 6666666541000 00 0 014542 25554 44555554445555543 5666643 89
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCcccc----ccCHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGI----YSDTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDA 291 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~----~~~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~ 291 (625)
++|+++++ +++++|++++++|++|. ..++++|.++|++||+++|+|++++ ++... +.+...+. .+|+
T Consensus 192 ~~le~~i~-----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~-~~di 265 (420)
T 2pb2_A 192 HAVKAVMD-----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV-TPDI 265 (420)
T ss_dssp HHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCSE
T ss_pred HHHHHHhc-----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC-CCCe
Confidence 99999987 57999999999998886 3568999999999999999999985 22211 11111111 4688
Q ss_pred EEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHH
Q 043646 292 IFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWV 371 (625)
Q Consensus 292 v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~ 371 (625)
++ ++|+++++..+|++++++++ .+.+.+...+ .+ + .+++.....+.++++.+
T Consensus 266 it--~sK~l~~G~~iG~~~~~~~l--~~~l~~~~~~-~t---------------------~-~~~~~~~aa~~a~L~~~- 317 (420)
T 2pb2_A 266 LT--SAKALGGGFPVSAMLTTQEI--ASAFHVGSHG-ST---------------------Y-GGNPLACAVAGAAFDII- 317 (420)
T ss_dssp EE--ECGGGGTTSCCEEEEECHHH--HTTCC----C-CE---------------------E-CCCHHHHHHHHHHHHHH-
T ss_pred EE--ecccccCCCceEEEEEhHHH--HHhhcCCCcC-cc---------------------c-CcCHHHHHHHHHHHHHH-
Confidence 75 46999854458999999886 3344321100 00 0 12222222223344443
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 372 KEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+. +.+.++.+++++++.+.|.++ |.+....+ .+.++.+.+.... ..+..++.+.|
T Consensus 318 -~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~v~~~~~~-------------~~~~~~l~~~l 376 (420)
T 2pb2_A 318 -NT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG----MGLLIGAELKPKY-------------KGRARDFLYAG 376 (420)
T ss_dssp -SS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE----ETTEEEEEECGGG-------------TTCHHHHHHHH
T ss_pred -Hh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cceEEEEEECCCc-------------hHHHHHHHHHH
Confidence 21 466778888888888888654 44432222 3455655443210 11356788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+ +||.++++. ++++||++++.++++|+++++++|++++++
T Consensus 377 ~~-~Gi~v~~~~---------------------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 377 AE-AGVMVLNAG---------------------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp HH-TTEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-CCCEEEeCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 66 799998641 378999999999999999999999998764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=211.36 Aligned_cols=329 Identities=16% Similarity=0.132 Sum_probs=209.3
Q ss_pred EeccCCCCCcchHHHHHHHHH-hhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-----CCC--cEEEeCChHH
Q 043646 79 TYADHTASGRSLRYIEDYIIN-NVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-----QAD--AIIFCGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~-~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-----~~~--~vift~sGtt 150 (625)
.|+|..+.++.++.|.+++.+ .+... +...|....+ ..++++.++++++.. ..+ +|++| +|++
T Consensus 35 ~y~d~~~~~~~~~~v~~a~~~~~~~~~----~~~~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~~~i~~t-~g~~ 105 (397)
T 3fsl_A 35 LYYNEDGIIPQLQAVAEAEARLNAQPH----GASLYLPMEG----LNCYRHAIAPLLFGADHPVLKQQRVATIQT-LGGS 105 (397)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHSCC----CCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-SHHH
T ss_pred EEECCCCCccCcHHHHHHHHhhccCcc----ccccCCCCCc----hHHHHHHHHHHHhcCCcccccccceEEEEc-CCcH
Confidence 377877788888999999988 77531 1111111111 234666666666431 234 68898 7888
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHHHh
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL--DDNGLLDIEALRSQLELY 228 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~~~ld~~~L~~~l~~~ 228 (625)
+++..+++.+. .+++||+ |+++.+.|+++...++..|++++.++. +.++.+|+++|++++++.
T Consensus 106 ~a~~~~~~~~~-------------~~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 106 GALKVGADFLK-------------RYFPESG--VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp HHHHHHHHHHH-------------HHCTTCC--EEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-------------hcCCCCe--EEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 88888854432 1468886 999999999998889999999999998 346789999999999731
Q ss_pred hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCC-CCCCCcEEEEcCCCC
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSR-NIDGYDAIFLATHKF 299 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~-~~~~~D~v~~S~hK~ 299 (625)
.++++++++++++||||.+.+ +++|+++|++||+++|+|++++..... ..+... ......+++.|++|.
T Consensus 171 --~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 248 (397)
T 3fsl_A 171 --QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKI 248 (397)
T ss_dssp --CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTT
T ss_pred --CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEeccccc
Confidence 246889999999999999966 558999999999999999997754322 111111 112445778899999
Q ss_pred CCCCC-CceEEEEec---cccccCCCCCcccCCceEEeeccccccccccccchhh--hhcCCChh-HHHHHH-HHHHHH-
Q 043646 300 LGGPG-TPGILLISK---ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE--RENGGTPQ-IVQMIR-AALAFW- 370 (625)
Q Consensus 300 lggp~-g~G~l~v~~---~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~--~~~~gt~~-~~~~~~-aal~~~- 370 (625)
+|.|+ ++|++++.. +.. ..+ ...... +...++++ +.+.+. +++.-.
T Consensus 249 ~~~~G~riG~~~~~~~~~~~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 303 (397)
T 3fsl_A 249 FSLYGERVGGLSVMCEDAEAA--GRV-----------------------LGQLKATVRRNYSSPPNFGAQVVAAVLNDEA 303 (397)
T ss_dssp TTCGGGCCEEEEEECSSHHHH--HHH-----------------------HHHHHHHHHTTTSSCCSHHHHHHHHHHTSHH
T ss_pred ccCcCCCeeEEEEecCCHHHH--HHH-----------------------HHHHHHHHHhccCCCCHHHHHHHHHHhcCHH
Confidence 97332 379987632 221 000 000000 11122222 222221 111100
Q ss_pred HHh--hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 371 VKE--YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 371 ~~~--~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+.. ....+.+.++.+++++++.+.|.+++ ++++..+ ..+++.|.-. +...+.+
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~~~~~ 361 (397)
T 3fsl_A 304 LKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN----QRGMFSYTGL------------------SAAQVDR 361 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHH----CCSSEEECCC------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecC----CceEEEecCC------------------CHHHHHH
Confidence 000 12345677788888889999887653 5554443 2344444322 2445655
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.| +++||.+++| + ||+++.. +++++++++++|+++
T Consensus 362 ~l-~~~gi~v~~g-----------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 362 LR-EEFGVYLIAS-----------------------------------G--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp HH-HTTCEECCTT-----------------------------------C--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred HH-HhCCEEECCC-----------------------------------C--eEEEEec-CHhhHHHHHHHHHhh
Confidence 55 5689999742 3 9999744 557799999999875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=201.22 Aligned_cols=330 Identities=11% Similarity=0.037 Sum_probs=203.7
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|+.++. ..++.+.+++.+.+......+.. + ......++++++++++|.+ +++|| +|+++
T Consensus 39 ~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~~~~---~v~~~-~gg~~ 107 (406)
T 4adb_A 39 KEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNG--Y-----TNEPVLRLAKKLIDATFAD---RVFFC-NSGAE 107 (406)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT--S-----CCHHHHHHHHHHHHHSSCS---EEEEE-SSHHH
T ss_pred CEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCC--c-----CCHHHHHHHHHHHhhCCCC---eEEEe-CcHHH
Confidence 3488876653 33789999999888653322211 1 1245678999999999864 78998 56666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~~~~ld~ 218 (625)
++..++.++... ....-.+| ++ +|+..+..|.+........+ ..+..++. .|+
T Consensus 108 a~~~al~~~~~~--------~~~~~~~g~~~-vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~ 173 (406)
T 4adb_A 108 ANEAALKLARKF--------AHDRYGSHKSG-IVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDI 173 (406)
T ss_dssp HHHHHHHHHHHH--------HHHHTCTTCCE-EEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCH
T ss_pred HHHHHHHHHHHH--------HHhcCCCCCcE-EEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcH
Confidence 666666654100 00000144 43 44444444444443333333 34555554 389
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCcccccc-----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCc
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYS-----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYD 290 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~-----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D 290 (625)
++|+++++ +++++|+++ ++|+||.+. ++++|.++|++||+++|+|++++ ++... ......+. ..|
T Consensus 174 ~~l~~~l~-----~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~d 246 (406)
T 4adb_A 174 NSASALID-----DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGV-TPD 246 (406)
T ss_dssp HHHHTTCS-----TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC-CCS
T ss_pred HHHHHHhc-----CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCC-CCC
Confidence 99999887 579999999 889998664 58999999999999999999986 22211 11111111 468
Q ss_pred EEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH-HHHHHHHH
Q 043646 291 AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ-MIRAALAF 369 (625)
Q Consensus 291 ~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~~~aal~~ 369 (625)
++++ +|++++...+|++++++++. +.+.+...++ ..+.+++.. .+.++++.
T Consensus 247 ~~t~--sK~~~~G~r~G~~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~a~~~~l~~ 298 (406)
T 4adb_A 247 LLTT--AKALGGGFPVGALLATEECA--RVMTVGTHGT------------------------TYGGNPLASAVAGKVLEL 298 (406)
T ss_dssp EEEE--CGGGGTTSCCEEEEECHHHH--HTCCTTSSCC------------------------SSTTCHHHHHHHHHHHHH
T ss_pred EEEe--chhhcCCCCeEEEEEcHHHH--hhhccCCcCC------------------------CCCCCHHHHHHHHHHHHH
Confidence 7755 89998333589999998873 3333322110 011122222 12233333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+ + .+.+.++.+++++++.+.|.++ +.+.-.. ..+.++.+.+.... ..+..++.+
T Consensus 299 ~--~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~~~~-------------~~~~~~~~~ 356 (406)
T 4adb_A 299 I--N---TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVR----GLGLLIGCVLNADY-------------AGQAKQISQ 356 (406)
T ss_dssp H--S---SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE----EETTEEEEEECTTT-------------TTCHHHHHH
T ss_pred H--H---hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEEEEEEEeCCc-------------HHHHHHHHH
Confidence 2 1 2567778888888888888654 1121111 12345555543211 113568888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.|.+ +||.++++. ++++|+++++.++++|+++++++|++++.+.
T Consensus 357 ~l~~-~gi~v~~~~---------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 357 EAAK-AGVMVLIAG---------------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp HHHH-TTEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCcEEeecC---------------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8866 599998542 3889999999999999999999999988764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=212.55 Aligned_cols=332 Identities=16% Similarity=0.139 Sum_probs=210.1
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-----CCC--cEEEeCChHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-----QAD--AIIFCGAGTTA 151 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-----~~~--~vift~sGtta 151 (625)
+|+|....++.++.|.+++.+.+... ....|....+ ..++++.++++++.. ..+ +|++| +|+++
T Consensus 58 ~y~d~~~~~~~~~~v~~a~~~~~~~~----~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t-~G~t~ 128 (420)
T 4f4e_A 58 VYTNEDGKIPLLRAVRDAEKARVEAG----LPRGYLPIDG----IAAYDASVQKLLLGDDSPLIAAGRVVTAQA-LGGTG 128 (420)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTC----CCCCCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-EHHHH
T ss_pred eeECCCCCccCcHHHHHHHHHHhccC----CCCCCCCCCC----cHHHHHHHHHHhcCCCccccccCceEEEEC-CccHH
Confidence 47777788888899999998877531 1111111112 234555566555331 233 68898 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec--CCCCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL--DDNGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~~~ld~~~L~~~l~~~~ 229 (625)
++..++..+. .+++||+ |+++.+.|+++...++..|++++.++. +.++.+|+++|++++++.
T Consensus 129 al~~~~~~~~-------------~~~~gd~--Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 192 (420)
T 4f4e_A 129 ALKIGADFLR-------------TLNPKAK--VAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY- 192 (420)
T ss_dssp HHHHHHHHHH-------------HHCTTCC--EEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC-
T ss_pred HHHHHHHHHH-------------HhCCCCE--EEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC-
Confidence 8988854332 1478886 999999999998889999999999998 346789999999999731
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCC-CCCCCcEEEEcCCCCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSR-NIDGYDAIFLATHKFL 300 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~-~~~~~D~v~~S~hK~l 300 (625)
.++++++++++++||||.+.+ +++|+++|++||+++++|++++..... ..+... ...+.++++.|++|.|
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 271 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSF 271 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccC
Confidence 246899999999999999966 568899999999999999997643321 111111 1124568888999999
Q ss_pred CCCC-CceEEEEe---ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC-CChhHHHHHH-HHHHHH-HHh
Q 043646 301 GGPG-TPGILLIS---KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG-GTPQIVQMIR-AALAFW-VKE 373 (625)
Q Consensus 301 ggp~-g~G~l~v~---~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~~~-aal~~~-~~~ 373 (625)
|.|+ .+|++++. ++.. ..+ . ..... ..+... +.+.+.+.+. +++.-. +.+
T Consensus 272 ~~~G~RiG~~~~~~~~~~~~--~~~---~-----------------~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 328 (420)
T 4f4e_A 272 SLYGERVGALSIITDSKDEA--ARV---L-----------------SQLKR-VIRTNYSNPPTHGGAIVAAVLASPELRA 328 (420)
T ss_dssp TCGGGCEEEEEEECSSHHHH--HHH---H-----------------HHHHH-HHHTTTSSCCSHHHHHHHHHHHCHHHHH
T ss_pred cCcCCCcEEEEEEcCCHHHH--HHH---H-----------------HHHHH-HHhcccCCCCHHHHHHHHHHhcCHHHHH
Confidence 8332 37988752 2221 000 0 00000 001111 2233333221 111110 000
Q ss_pred --hcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 374 --YIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 374 --~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
....+.++++.+++++++.+.|.++ +++.+..+ ..+.+.|.-. +...+.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~------------------~~~~~~~~l- 385 (420)
T 4f4e_A 329 SWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA----QRGMFSYSGL------------------TSAQVDRLR- 385 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH----SCSSEEECCC------------------CHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC----CccEEEEeCC------------------CHHHHHHHH-
Confidence 1224567778888889999998876 35555444 2345544322 244565555
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+++||.++++ + |||++. .+++++++++++|++++
T Consensus 386 ~~~gI~v~~~-----------------------------------~--Ris~~~-~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 386 EEFGIYAVST-----------------------------------G--RICVAA-LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp HHHCEECCTT-----------------------------------S--EEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred HhCCEEecCC-----------------------------------C--eEEEec-CCHHHHHHHHHHHHHHh
Confidence 5689998732 2 999974 36677999999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=207.37 Aligned_cols=177 Identities=16% Similarity=0.104 Sum_probs=130.6
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.++.++.|.+++. .+.+| ..+.+++++.+++++|++++++++++ +|+++++..++.+
T Consensus 39 ~~~~~~~v~~a~~-----~~~~~-----------~~~~~~~~~~~a~~~g~~~~~~~~~~-~ggt~a~~~~~~~------ 95 (374)
T 2aeu_A 39 GFLIDEKDKALLN-----TYIGS-----------SYFAEKVNEYGLKHLGGDENDKCVGF-NRTSSAILATILA------ 95 (374)
T ss_dssp CCCCCHHHHHHHT-----STTHH-----------HHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHH-----HhcCc-----------hHHHHHHHHHHHHHhCCCCcceEEEE-cChHHHHHHHHHh------
Confidence 4577888888874 11111 22346677788899998532378888 5566667776654
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhH---HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE-EEEec
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNL---LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML-GSFSA 241 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~---~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l-v~~~~ 241 (625)
+ +||+ |+++.+.|++.. ..++..|++++.+ .|+++|+++ + +++++ |++++
T Consensus 96 ----------~-~gd~--Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~-----~~~~~~v~~~~ 149 (374)
T 2aeu_A 96 ----------L-KPKK--VIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-I-----DKDTLVIITGS 149 (374)
T ss_dssp ----------H-CCSE--EEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C-----CTTEEEEEECB
T ss_pred ----------C-CCCE--EEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C-----CCccEEEEEcc
Confidence 4 6775 888877555433 3556679999888 278888877 4 68999 99999
Q ss_pred ccCccc-cccCHHHHHHHHHHcCCEEEEeccCcCCCc-cc-c--CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 242 CSNVTG-IYSDTRSIARLLHQYGGFACFDFAASGPYV-KI-N--LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 242 ~~n~TG-~~~~l~~I~~la~~~g~~vivD~A~~~g~~-~i-d--~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
++|||| ...++++|.++|++||+++|+|++++.+.. +. . ...+ ++|+++.|+||+++|| ++|++++++++
T Consensus 150 p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~---~~di~~~S~sK~l~g~-~~G~~~~~~~~ 224 (374)
T 2aeu_A 150 TMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL---GADLVVTSTDKLMEGP-RGGLLAGKKEL 224 (374)
T ss_dssp CTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH---TCSEEEEETTSSSSSC-SCEEEEEEHHH
T ss_pred CCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc---CCcEEEecCcccccCc-ceEEEEECHHH
Confidence 999999 889999999999999999999999875431 11 0 1112 6799999999999877 56999999877
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=206.04 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SW 198 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~ 198 (625)
....++++++++++|.+. .+++++|+. ++..++.++ +.+||+.+|++++..|++... ..
T Consensus 48 ~~~~~l~~~la~~~~~~~---~i~~~~g~~-a~~~a~~~~---------------~~~g~~~vvi~~~~~~~~~~~~~~~ 108 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS---AVFFPSGTM-AQQIALRIW---------------ADRKENRRVAYHPLSHLEIHEQDGL 108 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE---EEEESCHHH-HHHHHHHHH---------------HHHHTCCEEEECTTCHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHhCCCc---EEEeCCHHH-HHHHHHHHH---------------HhcCCCcEEEEeccceeeehhcchH
Confidence 356789999999999853 255556665 566665555 245564457777777765432 22
Q ss_pred -HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccCHHHH---HHHHHHcCCEEEEeccCc
Q 043646 199 -RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSDTRSI---ARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 199 -~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~l~~I---~~la~~~g~~vivD~A~~ 273 (625)
...|++++.++. .++.+|+++|+++ . +++++|++++++|++ |.+.|.++| +++|++||+++|+|+++.
T Consensus 109 ~~~~g~~~~~v~~-~~~~~d~~~l~~~-~-----~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~ 181 (359)
T 3pj0_A 109 KELQQITPLLLGT-ANQLLTIDDIKSL-R-----EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL 181 (359)
T ss_dssp HHHHCCEEEECSC-TTSCCCHHHHHTC-S-----SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred HHhcCceEEecCC-cCCCcCHHHHHhc-c-----CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 456999999887 4678999999887 3 689999999999998 788886555 999999999999999876
Q ss_pred CCCc---cccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 274 GPYV---KINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 274 ~g~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
.+.. ......+. .++|++++|+||++++|.| |+++.++++.+ .+... ..
T Consensus 182 ~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~--~~~~~------------------------~~ 233 (359)
T 3pj0_A 182 WEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQ--EAKIW------------------------KR 233 (359)
T ss_dssp GGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHH--HHHHH------------------------HH
T ss_pred hcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHH--HHHHH------------------------HH
Confidence 4321 11111111 2679999999999998877 88888877732 11100 00
Q ss_pred hhcCCC--hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCC
Q 043646 351 RENGGT--PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 351 ~~~~gt--~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
.+..++ .+..+ .+++..+ .+. .+.+ ++...+++++.+.|.++|++++. .+. ....+.+.+....
T Consensus 234 ~~~~~~~~~~~~~--~a~~~~l-~~~--~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~---~~~~~~~~~~~~~---- 300 (359)
T 3pj0_A 234 RYGGDLISLYPYI--LSADYYF-EKR--IGKM-AEYFEAAKGLAERFNSCSGVKTVPEVP---VSNMFHVYFENSA---- 300 (359)
T ss_dssp HTTCCCSCCHHHH--HHHHHHH-HHH--GGGH-HHHHHHHHHHHHHHHTSTTEEEESSSC---SSSEEEEEESSCH----
T ss_pred HhCCCcchhHHHH--HHHHHHH-HHH--HHHh-HHHHHHHHHHHHHHhhCCCceeeccCC---cceEEEEEecCcc----
Confidence 000111 12222 1122111 111 1223 34566788899999999999986 332 2334433332110
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC---CC
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY---YM 504 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~---~~ 504 (625)
..+..++.+.|.+ +||.+++|..+..+ ..+++|++++. ..
T Consensus 301 ---------~~~~~~l~~~l~~-~GV~v~~g~~~~~~---------------------------~~~~~r~~i~~~~~~~ 343 (359)
T 3pj0_A 301 ---------DEIGAILTKIQDE-TGVGISGYLQEKSA---------------------------DVCAFEVSVGDAFAEI 343 (359)
T ss_dssp ---------HHHHHHHHHHHHH-HCEECCSCCEEEET---------------------------TEEEEEEECCTTGGGS
T ss_pred ---------chhHHHHHHHHHh-cCcEecCCccccCC---------------------------CceEEEEEecCccccC
Confidence 0124577888854 79999988655311 13789999863 35
Q ss_pred CHHHHHHHHHHHHHH
Q 043646 505 SNEEFEFILAALEFI 519 (625)
Q Consensus 505 t~edid~ll~aL~~~ 519 (625)
+.++++..++.|.+.
T Consensus 344 ~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 344 PAKNLELVFRCLEKE 358 (359)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 788888888877654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-21 Score=208.68 Aligned_cols=330 Identities=10% Similarity=0.031 Sum_probs=208.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CCCC----CCcEEE--eCChHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GGGQ----ADAIIF--CGAGTT 150 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~~~----~~~vif--t~sGtt 150 (625)
.|+|+.+..+..+.+.+++.+... ....+.. |....+ ..++++.+++++ |.+. +++|++ | +|++
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~---Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t-~ggt 129 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKE---YPPVAG----FPLFLEAAQFLMFGKDSKAAQEGRIASCQS-LSGT 129 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS---CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-SHHH
T ss_pred cccCCCCCEechHHHHHHHHHHhhcccCCCCC---CCCCcc----hHHHHHHHHHHhcCCCccccCcCcEEEEEC-CcHH
Confidence 588998888888899988655431 1111211 111111 345777777776 7762 237998 9 6778
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH----HcCCeEEEEec-CCC--CCCCHHHHHH
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR----QSLAEVVEIGL-DDN--GLLDIEALRS 223 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~-~~~--~~ld~~~L~~ 223 (625)
+++..++..+. .+.+||+ |+++.++|+++...++ ..|++++.++. +.+ +.+|+++|++
T Consensus 130 ~al~l~~~~~~-------------~~~~gd~--Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~ 194 (448)
T 3meb_A 130 GSLHIGFEFLH-------------LWMPKAE--FYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKK 194 (448)
T ss_dssp HHHHHHHHHHH-------------HHCTTCC--EEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHH
T ss_pred HHHHHHHHHHH-------------HhCCCCE--EEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHH
Confidence 77876443221 1468886 9999999999988888 88999999998 554 7899999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEeccCcC-CCcccc-----CCCC-CCCCCcEEE
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASG-PYVKIN-----LRSR-NIDGYDAIF 293 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A~~~-g~~~id-----~~~~-~~~~~D~v~ 293 (625)
++++. .++++++++++++||||.+.+. ++|+++|++||+++++|+++.. ++...+ +..+ ....-.+++
T Consensus 195 ~l~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 195 DIQSA--PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp HHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHhC--CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 99841 1357899999999999999875 5599999999999999999653 222211 1110 011224667
Q ss_pred EcCCCCCCCCC-CceEE--EE--------ec-----cccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 294 LATHKFLGGPG-TPGIL--LI--------SK-----ALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l--~v--------~~-----~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
.|+||.||.|+ .+|++ ++ .+ .+. ..+ .. ..+....++
T Consensus 273 ~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~--~~l------------------------~~-~~~~~~~~~ 325 (448)
T 3meb_A 273 QSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMV--SGM------------------------TL-QIRKTWSMS 325 (448)
T ss_dssp EECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHH--HHH------------------------HH-HHHTTTSSC
T ss_pred ecccccCCCccccceeeeeeeccccccccCCHHHHHHHH--HHH------------------------HH-HHhcccCCc
Confidence 89999998443 37887 55 32 220 000 00 011122233
Q ss_pred hHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHhhCCC--Cc------EEEeCCCCCCCcceEEEEeccC
Q 043646 358 QIVQMIRAALAFWVKEY-------IGYEVIKKQEDVYIESALGRILPN--QN------IQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~-------~g~~~i~~~~~~l~~~l~~~L~~l--~g------v~v~~~~~~~~~~i~~f~~~~~ 422 (625)
+..+...+ ..++ ... ...+.++++.+.+++++.+.|.++ ++ +.+..+ ..+.+.|.-.
T Consensus 326 ~~~~~~a~-~~~l-~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~-- 397 (448)
T 3meb_A 326 AIHGAYIV-QVIV-HDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT----AIGMFTFTGL-- 397 (448)
T ss_dssp CHHHHHHH-HHHH-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH----CCSSEEECCC--
T ss_pred cHHHHHHH-HHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC----CceEEEecCC--
Confidence 33332111 1111 110 124567778888889999998765 44 333322 2344444322
Q ss_pred CCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC
Q 043646 423 TNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~ 502 (625)
.. +++..|.+++||.+.+|. + |||++.
T Consensus 398 ----------------~~-~~~~~ll~~~gV~v~~G~----------------------------------g--Ris~a~ 424 (448)
T 3meb_A 398 ----------------TP-EHVDYLKEKWSIYLVKAG----------------------------------G--RMSMCG 424 (448)
T ss_dssp ----------------CH-HHHHHHHHHHCEEECSGG----------------------------------G--EEEGGG
T ss_pred ----------------CH-HHHHHHHHhCCEEEeCCC----------------------------------c--EEEEec
Confidence 22 455666577899997542 2 999964
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 043646 503 YMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 503 ~~t~edid~ll~aL~~~~~~ 522 (625)
. +++++++++++|++++..
T Consensus 425 ~-~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 425 L-TESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp C-CTTTHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHh
Confidence 3 556799999999998863
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-22 Score=213.27 Aligned_cols=326 Identities=12% Similarity=0.071 Sum_probs=208.9
Q ss_pred EeccCCCCCcchHHHHHHHHH-hhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEE--eCChH
Q 043646 79 TYADHTASGRSLRYIEDYIIN-NVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG------GQADAIIF--CGAGT 149 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~-~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~------~~~~~vif--t~sGt 149 (625)
.|+|+.+..++++.+.+++.+ .+.. +....|.... ...++++.++++++. +++ +|++ | +|+
T Consensus 38 ~~~d~~~~~~~~~~v~~a~~~~~~~~----~~~~~y~~~~----g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~t-~g~ 107 (412)
T 1yaa_A 38 AYRDDNGKPWVLPSVKAAEKLIHNDS----SYNHEYLGIT----GLPSLTSNAAKIIFGTQSDALQED-RVISVQS-LSG 107 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTCT----TCCCCCCCTT----CCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHH
T ss_pred eeeCCCCCCCCcHHHHHHHHhhhcCc----ccccCCCCCC----CcHHHHHHHHHHHhcCCCCCCCcc-eEEEEec-cch
Confidence 477887777888999999988 6641 1111111111 134566777776632 344 7988 8 788
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHHH
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DD-NGLLDIEALRSQLEL 227 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~~~ld~~~L~~~l~~ 227 (625)
++++..++..+. .+.+||+ |+++.+.|+++...++..|++++.++. ++ ++.+|+++|++++++
T Consensus 108 ~~a~~~~~~~~~-------------~~~~gd~--Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 172 (412)
T 1yaa_A 108 TGALHISAKFFS-------------KFFPDKL--VYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp HHHHHHHHHHHH-------------HHCTTCC--EEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHH-------------HhCCCCE--EEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHh
Confidence 888887744331 1357886 888889999998888889999999998 43 567999999999974
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC-Cc-------cc-cCCCCCCCC---CcEE
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV-------KI-NLRSRNIDG---YDAI 292 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g-~~-------~i-d~~~~~~~~---~D~v 292 (625)
. .+.+.++++++++||||.+.+ +++|+++|++||+++|+|++++.. +. ++ ++... .. .+++
T Consensus 173 ~--~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~ 248 (412)
T 1yaa_A 173 A--PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK--LSTVSPVFV 248 (412)
T ss_dssp S--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH--TTTTCCEEE
T ss_pred C--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc--CCCCcceEE
Confidence 1 113566667999999999976 567899999999999999997532 11 11 22111 12 3577
Q ss_pred EEcCCCCCCCCCC--ceEEE--E-----ecc----ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 293 FLATHKFLGGPGT--PGILL--I-----SKA----LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 293 ~~S~hK~lggp~g--~G~l~--v-----~~~----~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
+.|++|.+| |.| +|+++ . +++ +. ..+. . ..+....+++.
T Consensus 249 ~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~--~~l~------------------------~-~~~~~~~~~~~ 300 (412)
T 1yaa_A 249 CQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVT--SQLA------------------------K-IIRSEVSNPPA 300 (412)
T ss_dssp EEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHH--HHHH------------------------H-HHHTTTSSCCH
T ss_pred EeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHHH--HHHH------------------------H-HHhhccCCCCh
Confidence 889999997 544 69988 5 343 31 1110 0 01111223333
Q ss_pred HHHH--HHHHHHHH-Hh--hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 360 VQMI--RAALAFWV-KE--YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 360 ~~~~--~aal~~~~-~~--~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
.... .+++.... .+ ....+.+.++.+.+++++.+.|.+++ +++++.+ ..+++.|.-
T Consensus 301 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~------------ 364 (412)
T 1yaa_A 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN----QCGMFSFTG------------ 364 (412)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH----CCSSEEECC------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc----CceEEEeeC------------
Confidence 3221 22222110 00 12456777888888899999887653 3555444 234444421
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
++..++...| +++||.+++ ++|||++. .+++|+++
T Consensus 365 ------~~~~~~~~~l-~~~gi~v~~-------------------------------------~~Ris~~~-~~~~~i~~ 399 (412)
T 1yaa_A 365 ------LTPQMVKRLE-ETHAVYLVA-------------------------------------SGRASIAG-LNQGNVEY 399 (412)
T ss_dssp ------CCHHHHHHHH-HHHCEECCT-------------------------------------TSEEEGGG-CCTTTHHH
T ss_pred ------CCHHHHHHHH-HhCCEEecc-------------------------------------CcEEEEcc-CCHhHHHH
Confidence 1244564444 568999872 36999984 58999999
Q ss_pred HHHHHHHHHHh
Q 043646 512 ILAALEFIAAY 522 (625)
Q Consensus 512 ll~aL~~~~~~ 522 (625)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-20 Score=196.71 Aligned_cols=330 Identities=14% Similarity=0.028 Sum_probs=203.7
Q ss_pred eEeccCCCCC------cc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChH
Q 043646 78 LTYADHTASG------RS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGAGT 149 (625)
Q Consensus 78 ~~Yld~~~~~------~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~sGt 149 (625)
..|+|+.++. +. ++.|.+++.+.+...... +...+ ......++++++++++|.+ ++ +|+|| +|+
T Consensus 42 ~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~-~~~~~-----~~~~~~~l~~~la~~~~~~~~~-~v~~~-~gg 113 (419)
T 2eo5_A 42 NKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHA-AANDF-----YNIPQLELAKKLVTYSPGNFQK-KVFFS-NSG 113 (419)
T ss_dssp CEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCC-SCSCS-----CCHHHHHHHHHHHHHSSCSSCE-EEEEE-SSH
T ss_pred CEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccc-ccccc-----CCHHHHHHHHHHHHhCCCCcCC-EEEEe-Cch
Confidence 3588886543 33 789999999988543110 00011 1234567888999999987 55 89998 677
Q ss_pred HHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCCCC-
Q 043646 150 TAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDNGL- 215 (625)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~~~- 215 (625)
++++..++.++. ..++++ +|+..+.+|.+........| .+++.+|.+.+..
T Consensus 114 ~ea~~~ai~~~~--------------~~~~~~-vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 178 (419)
T 2eo5_A 114 TEAIEASIKVVK--------------NTGRKY-IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRN 178 (419)
T ss_dssp HHHHHHHHHHHH--------------TTSCCE-EEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSC
T ss_pred HHHHHHHHHHHH--------------HhhCCc-EEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccc
Confidence 777777766541 112554 34444455555544443222 3678888764322
Q ss_pred ---------------CCHHHHH-HHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-C
Q 043646 216 ---------------LDIEALR-SQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-G 274 (625)
Q Consensus 216 ---------------ld~~~L~-~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~ 274 (625)
+|+++|+ +++++....+++++|+++.++|+||.+.+ +++|.++|++||+++|+|++++ +
T Consensus 179 ~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~ 258 (419)
T 2eo5_A 179 PWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGL 258 (419)
T ss_dssp TTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 4688999 88873100125677777766678998777 9999999999999999999987 4
Q ss_pred CCccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 PYVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 g~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+.... .+...+ ..+|+++ +.|.|+++ .++|++++++++ . .+ +...+ ++
T Consensus 259 g~~g~~~~~~~~~-~~~d~~t--~sK~~~~G~~riG~~~~~~~~--~-~~-~~~~~-~t--------------------- 309 (419)
T 2eo5_A 259 GRTGKLFAIENFN-TVPDVIT--LAKALGGGIMPIGATIFRKDL--D-FK-PGMHS-NT--------------------- 309 (419)
T ss_dssp TTTSSSSGGGGGT-CCCSEEE--ECGGGGTTTSCCEEEEEEGGG--C-CC--------C---------------------
T ss_pred ccCcchhhHHhcC-CCCCEEE--ecccccCCccceEEEEEchHh--h-cC-CcccC-CC---------------------
Confidence 43221 111111 1567775 45999865 678999999887 3 22 10000 00
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcccc
Q 043646 352 ENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMK 431 (625)
Q Consensus 352 ~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 431 (625)
..+.+.....+.++++.. + .+.++.+.+++++.+.|.++ +..+.+ .+.++.+.+.+..
T Consensus 310 -~~~n~~~~~aa~aal~~~--~-----~~~~~~~~~~~~l~~~L~~~--~~~~~~----~g~~~~i~~~~~~-------- 367 (419)
T 2eo5_A 310 -FGGNALACAIGSKVIDIV--K-----DLLPHVNEIGKIFAEELQGL--ADDVRG----IGLAWGLEYNEKK-------- 367 (419)
T ss_dssp -CCCCHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHTTS--SSEEEE----ETTEEEEECSCHH--------
T ss_pred -CCCCHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHh--hhheEe----eeEEEEEEEecCc--------
Confidence 011222222223344432 1 26778888899999999876 211111 2344444332210
Q ss_pred ccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 432 ~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
.... +.+.|. ++||.++++. ++++||++++.+|++|+++
T Consensus 368 ------~~~~-~~~~l~-~~Gv~v~~~~---------------------------------~~~lRis~~~~~t~e~i~~ 406 (419)
T 2eo5_A 368 ------VRDR-IIGESF-KRGLLLLPAG---------------------------------RSAIRVIPPLVISEEEAKQ 406 (419)
T ss_dssp ------HHHH-HHHHHH-HTTEECEEET---------------------------------TTEEEECCCTTCCHHHHHH
T ss_pred ------cHHH-HHHHHH-HCCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHH
Confidence 0134 777775 4799998641 2789999999999999999
Q ss_pred HHHHHHHHHHh
Q 043646 512 ILAALEFIAAY 522 (625)
Q Consensus 512 ll~aL~~~~~~ 522 (625)
++++|++++++
T Consensus 407 ~l~~l~~~l~~ 417 (419)
T 2eo5_A 407 GLDILKKVIKV 417 (419)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=212.94 Aligned_cols=392 Identities=11% Similarity=0.045 Sum_probs=223.6
Q ss_pred cccccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhh
Q 043646 37 SEFKNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVG 116 (625)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~ 116 (625)
..++...++...........+++.... ..+.... ...|+|+.+..+. +.|.+++.+.+.. +.. .|...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~---~~~ylD~~~~~~~-~~v~~a~~~~l~~--~~~---~y~~~ 73 (467)
T 2oqx_A 6 PFRIRVIEPVKRTTRAYREEAIIKSGM---NPFLLDS---EDVFIDLLTDSGT-GAVTQSMQAAMMR--GDE---AYSGS 73 (467)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHTTS---CGGGSCG---GGCSEECSCCSSC-SCCCHHHHHHTTS--CCC---CSSSC
T ss_pred chheeeecccccccHHHHHHHHHHcCC---CceeccC---CCeeEecccCCCc-HHHHHHHHHHhcc--Ccc---eeccC
Confidence 344445555555666677777766432 1233222 3469999887766 7888888777632 110 11111
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCC-----C----CceEEEEc
Q 043646 117 QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRD-----E----ERWVVFLG 187 (625)
Q Consensus 117 ~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~-----g----d~~~Vlv~ 187 (625)
....++++++++++|.+ +++||++|+ +++..++.++ .++ | |+ |+++
T Consensus 74 ----~~~~~l~~~la~~~~~~---~v~~t~~gt-~A~~~al~~~---------------~~~~~~~~G~~~~d~--Ii~~ 128 (467)
T 2oqx_A 74 ----RSYYALAESVKNIFGYQ---YTIPTHQGR-GAEQIYIPVL---------------IKKREQEKGLDRSKM--VAFS 128 (467)
T ss_dssp ----HHHHHHHHHHHHHHCCS---EEEEEC--C-CSHHHHHHHH---------------HHHHHHHHCCCTTTC--EEEE
T ss_pred ----chhHHHHHHHHHHhCcC---cEEEcCCcH-HHHHHHHHHH---------------hccccccCCCCccce--EEec
Confidence 23456889999999863 789995554 4455555554 133 5 65 6666
Q ss_pred CCCCchhH-HHHHHcCCeEEEEe------cC----CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---H
Q 043646 188 PYEHHSNL-LSWRQSLAEVVEIG------LD----DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---T 252 (625)
Q Consensus 188 ~~~h~s~~-~~~~~~G~~vv~v~------~~----~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l 252 (625)
.+|.... ..+...|+.++... .+ .++.+|+++|+++|++.. .+++++|++++++|++ |.+.+ +
T Consensus 129 -~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~-~~~~~~vi~~~~~n~~gG~~~~~~~l 206 (467)
T 2oqx_A 129 -NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG-PNNVPYIVATITSNSAGGQPVSLANL 206 (467)
T ss_dssp -SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC-GGGCCCEEEESSBCGGGCBCCCHHHH
T ss_pred -ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC-CCceeEEEEeccccCCCCccCCHHHH
Confidence 4664433 33444566655431 22 245789999999998421 1268999999999998 77654 7
Q ss_pred HHHHHHHHHcCCEEEEeccCcC-----------CCccccCCCCC---CCCCcEEEEcCCCCCCCCCCceEEEEecc-ccc
Q 043646 253 RSIARLLHQYGGFACFDFAASG-----------PYVKINLRSRN---IDGYDAIFLATHKFLGGPGTPGILLISKA-LYQ 317 (625)
Q Consensus 253 ~~I~~la~~~g~~vivD~A~~~-----------g~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~l~v~~~-~~~ 317 (625)
++|+++|++||+++|+|++|+. ++...+...+. ...+|++++|+||++|.|.| |+++.+++ +..
T Consensus 207 ~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~ 285 (467)
T 2oqx_A 207 KAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFD 285 (467)
T ss_dssp HHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHH
T ss_pred HHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHH
Confidence 8999999999999999988765 23222222210 02478889999999987755 77777766 311
Q ss_pred -cCCCCCcc-cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 318 -LGSSPPST-CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 318 -l~~~~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
+..+.+.. .+++. ...++.+..++. ++...+.+....+. .++..++++++.+.|
T Consensus 286 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~--al~~~l~~~~~~~~-~~~~~~~~~~l~~~L 341 (467)
T 2oqx_A 286 VYTECRTLCVVQEGF---------------------PTYGGLEGGAME--RLAVGLYDGMNLDW-LAYRIAQVQYLVDGL 341 (467)
T ss_dssp HHHHHHHHHHHTTSS---------------------CCCCCCCHHHHH--HHHHHHHHTTCHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCCc---------------------ccccchhhhHHH--HHHHhhHhhhhHHH-HHHHHHHHHHHHHHH
Confidence 11111111 01110 012232322221 22221112222122 234456678888888
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEec---cCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVY---STTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~---~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
.++ ++.+. +. .+.++.+.+. ++.+ ...++...+++.|..++||.+.++..|..+.... .+.
T Consensus 342 ~~~-~~~~~-~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~-~g~ 405 (467)
T 2oqx_A 342 EEI-GVVCQ-QA---GGHAAFVDAGKLLPHIP----------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK-TGK 405 (467)
T ss_dssp HHT-TCCEE-EE---CSSCEEEEHHHHSTTSC----------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT-TCS
T ss_pred HHC-CCeee-cC---CceEEEEechhhcccCC----------cccccHHHHHHHHHHhcCceeccccccccccccc-ccc
Confidence 776 67666 43 2334444332 1110 0011133457777345799998744321000000 000
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCC-CCHHHHHHHHHHHHHHHHhh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYY-MSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~-~t~edid~ll~aL~~~~~~~ 523 (625)
+ .-...+++|++++.. ++++|+++++++|++++...
T Consensus 406 ~---------------~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 406 Q---------------LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp B---------------CCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSG
T ss_pred c---------------ccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0 000137999999988 99999999999999998764
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-20 Score=196.79 Aligned_cols=328 Identities=12% Similarity=0.075 Sum_probs=198.5
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+........ .......+++++++++++|. + +++|++ |.+++
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~la~~~~~--~-~v~~~~-gg~ea 105 (395)
T 3nx3_A 37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN-------LYYNENIAAAAKNLAKASAL--E-RVFFTN-SGTES 105 (395)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT-------TSBCHHHHHHHHHHHHHHTC--S-EEEEES-SHHHH
T ss_pred EEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc-------ccCCHHHHHHHHHHHHhcCC--C-eEEEeC-CHHHH
Confidence 48887655 33578999999988854321111 11245677899999999983 3 799985 45554
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc------------CCeEEEEecCCCCCCCHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS------------LAEVVEIGLDDNGLLDIEA 220 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~------------G~~vv~v~~~~~~~ld~~~ 220 (625)
+..++.++... .+. .+ .++++ +|+..+..|.+........ +.++..++.+ |+++
T Consensus 106 ~~~al~~~~~~----~~~---~g-~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~ 171 (395)
T 3nx3_A 106 IEGAMKTARKY----AFN---KG-VKGGQ-FIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISS 171 (395)
T ss_dssp HHHHHHHHHHH----HHH---TT-CTTCE-EEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHH
T ss_pred HHHHHHHHHHH----hhc---cC-CCCCE-EEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHH
Confidence 55554443100 000 00 23443 3444444444443333221 2456666654 7999
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcEEE
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDAIF 293 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~v~ 293 (625)
|+++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++ ++... ......+. .+|+++
T Consensus 172 l~~~l~-----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~-~~d~~t 245 (395)
T 3nx3_A 172 VEKLVN-----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQI-LPDIMT 245 (395)
T ss_dssp HHTTCC-----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEEE
T ss_pred HHHhcc-----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCC-CCCEEE
Confidence 999887 57899999999999999988 9999999999999999999987 33221 11111111 467776
Q ss_pred EcCCCCCCCCCCceEEEEeccc-cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHH
Q 043646 294 LATHKFLGGPGTPGILLISKAL-YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372 (625)
Q Consensus 294 ~S~hK~lggp~g~G~l~v~~~~-~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~ 372 (625)
+| |.++++.++|++++++++ .+ .+.+...++.. .+.+.......++++...
T Consensus 246 ~s--K~~~~G~~~G~~~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~aa~aal~~~~- 297 (395)
T 3nx3_A 246 SA--KALGCGLSVGAFVINQKVASN--SLEAGDHGSTY-----------------------GGNPLVCAGVNAVFEIFK- 297 (395)
T ss_dssp EC--GGGTTTSCCEEEEECHHHHHH--HSCTTCCSSCB-----------------------SCCHHHHHHHHHHHHHHH-
T ss_pred ec--ccccCCCceEEEEEchhhhhh--hcCCcccCCCC-----------------------CCCHHHHHHHHHHHHHHH-
Confidence 65 988765568999998886 32 12222111100 112222222233444331
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 373 EYIGYEVIKKQEDVYIESALGRI----LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
. +.+.++.+++.+++++.| ..+|.+....+ .+.++.+.+... ....++.+.|.
T Consensus 298 -~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~---------------~~~~~~~~~l~ 354 (395)
T 3nx3_A 298 -E---EKILENVNKLTPYLEQSLDELINEFDFCKKRKG----LGFMQGLSLDKS---------------VKVAKVIQKCQ 354 (395)
T ss_dssp -H---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECTT---------------SCHHHHHHHHH
T ss_pred -h---hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----EEEEEEEEeCCc---------------chHHHHHHHHH
Confidence 1 223344444444444444 34455544322 234555544321 12567888886
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ .||.++++. ++++||++++.+|++|+++++++|++++.+
T Consensus 355 ~-~Gi~v~~~~---------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 355 E-NALLLISCG---------------------------------ENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp H-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 5 699998541 388999999999999999999999998754
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-20 Score=198.54 Aligned_cols=310 Identities=15% Similarity=0.079 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 116 ~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
++.......++++.++++.|.+ .++++++| ++++..+ ..+ +++||+ |+++...|++..
T Consensus 62 ~r~~~p~~~~l~~~la~l~g~~---~~~~~~sG-~~Ai~~~-~~l---------------~~~gd~--Vi~~~~~y~~~~ 119 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEGGT---RAFAFASG-MAATSTV-MEL---------------LDAGSH--VVAMDDLYGGTF 119 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS---EEEEESSH-HHHHHHH-HTT---------------SCTTCE--EEEESSCCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCC---CEEEecCH-HHHHHHH-HHH---------------cCCCCE--EEEeCCCchHHH
Confidence 3334456778999999999975 34555577 5666664 333 578885 888889998766
Q ss_pred HHHHH-----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 196 LSWRQ-----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 196 ~~~~~-----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
..+.. .|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|+
T Consensus 120 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe 189 (400)
T 3nmy_A 120 RLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIR-----ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDN 189 (400)
T ss_dssp HHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhc-----cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEEC
Confidence 55443 49999999875 8999999987 579999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cc-e-EEEEecc-ccccCCCCCcccCCceEEeecccccccccccc
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TP-G-ILLISKA-LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G-~l~v~~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
+++.++....+. + ++|+++.|++|+++||+ .+ | +++++++ +. +.+...
T Consensus 190 ~~~~~~~~~~~~-~---g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~--~~l~~~---------------------- 241 (400)
T 3nmy_A 190 TFASPMLQRPLS-L---GADLVVHSATKYLNGHSDMVGGIAVVGDNAELA--EQMAFL---------------------- 241 (400)
T ss_dssp TTTHHHHCCGGG-G---TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHH--HHHHHH----------------------
T ss_pred CCcccccCChhh-c---CCcEEEecCccccCCCCCcceeEEEEeCCHHHH--HHHHHH----------------------
Confidence 987554322121 2 78999999999999874 23 5 3444333 31 111000
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
.. ....+.+.... ..++.. ....+...++..+++.++.+.|.+.|.+. +..|.- ...+
T Consensus 242 --~~-~~g~~~~~~~a-~~~l~~----l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G 313 (400)
T 3nmy_A 242 --QN-SIGGVQGPFDS-FLALRG----LKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFG 313 (400)
T ss_dssp --HH-HHCCBCCHHHH-HHHHHH----HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred --HH-hcCCCCCHHHH-HHHHHh----HhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCC
Confidence 01 11112222111 111111 12234455566777889999999888876 433321 1246
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
++++|.+..+. -....+.+.| +.+++.+..|..++. |.......+..+...+ .
T Consensus 314 ~~~~~~l~~~~--------------~~~~~~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------~ 369 (400)
T 3nmy_A 314 GIVSIVLKGGF--------------DAAKRFCEKT-ELFTLAESLGGVESLVNHPAVMTHASIPVARREQ---------L 369 (400)
T ss_dssp SEEEEEETTHH--------------HHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHH---------H
T ss_pred ceEEEEeCCcH--------------HHHHHHHHcC-CcceEecCCCCCcceeeCccccccccCCHHHHHh---------c
Confidence 78888774310 0123455555 456677776765542 2222222333222111 2
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
|+.++.+|+|++....++.++.|.++|+
T Consensus 370 gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 370 GISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 5567999999998766666666655554
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=208.48 Aligned_cols=287 Identities=14% Similarity=0.102 Sum_probs=187.2
Q ss_pred HHHHHHHHHHhCC-----CCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCC----ceEEEEcCCCCchh
Q 043646 124 HEASNYIKRCLGG-----GQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEE----RWVVFLGPYEHHSN 194 (625)
Q Consensus 124 ~~~~~~ia~~~g~-----~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd----~~~Vlv~~~~h~s~ 194 (625)
.++|+.++++++. .++++|++| +|+++++..++.++ +++|| + |+++.++|+.+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~Gd~~~~~--Vlv~~P~y~~~ 132 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVG-TGSTQLCQAAVHAL---------------SSLARSQPVS--VVAAAPFYSTY 132 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEE-EHHHHHHHHHHHHH---------------HHTSSSSSEE--EEECSSCCTHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEe-CChHHHHHHHHHHh---------------cCCCCCCcce--EEEcCCCchhH
Confidence 4566666666652 233379998 89999999998887 46777 6 99999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 195 LLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...++..|++++.++++.++. . . +++++|++++++||||.+.+ +|++.++.+++++|+|++++.
T Consensus 133 ~~~~~~~g~~~~~~~~d~~~l-~--------~-----~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~ 196 (391)
T 3bwn_A 133 VEETTYVRSGMYKWEGDAWGF-D--------K-----KGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYW 196 (391)
T ss_dssp HHHHHTTCBTTEEEEEESTTC-C--------C-----CSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCS
T ss_pred HHHHHHcCCeEEEecCCHHHc-C--------C-----CCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCC
Confidence 988888999999998875432 1 1 47899999999999999986 555422333499999999875
Q ss_pred CC-ccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEE-eccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 PY-VKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLI-SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 g~-~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+. .++.. ..+.++++.|++|.||.|+ .+|++++ ++++. ..+.. ....
T Consensus 197 ~~~~~l~~----~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~--~~l~~------------------------~~~~ 246 (391)
T 3bwn_A 197 PHYTPITR----RQDHDIMLFTFSKITGHAGSRIGWALVKDKEVA--KKMVE------------------------YIIV 246 (391)
T ss_dssp TTTSCCCC----CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHH--HHHHH------------------------HHHH
T ss_pred CCCCcccc----CCCCeEEEEechhhcCCCccceEEEEecCHHHH--HHHHH------------------------Hhcc
Confidence 32 12221 1256899999999997443 2699998 66652 11100 0111
Q ss_pred hcCCChhHHHHH-HHHHHHHHH-------hhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCC---------CCcce
Q 043646 352 ENGGTPQIVQMI-RAALAFWVK-------EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSV---------KRQAI 414 (625)
Q Consensus 352 ~~~gt~~~~~~~-~aal~~~~~-------~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~---------~~~~i 414 (625)
...+++.+.+.+ .+++.-... .....+.++++.+..++++.+.|.+++++++..+.+. ...+.
T Consensus 247 ~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~ 326 (391)
T 3bwn_A 247 NSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPA 326 (391)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCS
T ss_pred cccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcce
Confidence 122333333322 122221100 0223667788888889999999998888887654321 11222
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
+.+.-.+. ...+.+.| +++||.+++|..|+. .++
T Consensus 327 ~~~~~~~~-----------------~~~~~~~l-~~~gV~v~pg~~fg~----------------------------~~~ 360 (391)
T 3bwn_A 327 FAWLGTKE-----------------ETDLVSEL-RRHKVMSRAGERCGS----------------------------DKK 360 (391)
T ss_dssp EEEEEESS-----------------SCCHHHHH-HHTTEECEEGGGGTC----------------------------CTT
T ss_pred EEEecCCc-----------------HHHHHHHH-HHCCEEEccCCCCCC----------------------------CCC
Confidence 33333221 12455666 558999999987741 148
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 495 WTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 495 ~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++|||++ ++++++++++++|++++++
T Consensus 361 ~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 361 HVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred EEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 9999998 3889999999999876543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=196.85 Aligned_cols=349 Identities=11% Similarity=-0.024 Sum_probs=205.9
Q ss_pred eEeccCCCCCc------chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASGR------SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~~------~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++.. .++.|.+++.+.+... .+.. ......+...+++++++++++...+++++||++|+.+
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea 116 (439)
T 3dxv_A 43 RELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGAT-----ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDA 116 (439)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSC-----SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCcc-----ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHH
Confidence 34788776555 6889999998888543 1111 1112345678899999999976552379999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeE--------------EEEecCCCCCC-
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEV--------------VEIGLDDNGLL- 216 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~v--------------v~v~~~~~~~l- 216 (625)
+..++.+.- .+.++++ +|+..+..|.+...+....|... ..++.+..+..
T Consensus 117 -~~~al~~~~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (439)
T 3dxv_A 117 -NEAAYRAIV-------------KATGRSG-VIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDP 181 (439)
T ss_dssp -HHHHHHHHH-------------HHHSCCE-EEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBT
T ss_pred -HHHHHHHHH-------------HHhCCCE-EEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccc
Confidence 444444320 0123343 55666666666654444333322 23333322222
Q ss_pred ----CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCC
Q 043646 217 ----DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRN 285 (625)
Q Consensus 217 ----d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~ 285 (625)
|+++|++++.+ ...+++++|+++.++|++|.+.| +++|.++|++||+++|+|++++ ++... ......+
T Consensus 182 ~~~~d~~~le~~l~~-~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~ 260 (439)
T 3dxv_A 182 TGDAILTLLTEKLAA-VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEG 260 (439)
T ss_dssp TSHHHHHHHHHHHHT-SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTT
T ss_pred cHHHHHHHHHHHHHh-cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcC
Confidence 68999999941 11256889999999999999988 9999999999999999999986 22111 1111111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA 365 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~a 365 (625)
..+|++ +++|.+++...+|++++++++ .+.+.+...+ ...+.+.......+
T Consensus 261 -~~~di~--s~sK~~~~G~riG~~~~~~~~--~~~~~~~~~~------------------------~t~~~~~~~~aa~a 311 (439)
T 3dxv_A 261 -FVPDIL--VLGKGLGGGLPLSAVIAPAEI--LDCASAFAMQ------------------------TLHGNPISAAAGLA 311 (439)
T ss_dssp -CCCSEE--EECGGGGTTSCCEEEEEEHHH--HTSCSSSSCC------------------------TTTTCHHHHHHHHH
T ss_pred -CCCCEE--EEcchhcCCcceEEEEECHHH--HhhhcCCCcC------------------------CCcccHHHHHHHHH
Confidence 146777 455999853358999999887 3333322100 00122222222233
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 366 ALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
+++.. +. +.+.++.+++.+++++.|.+ ++.+....+ .+.++.+.+....... ........
T Consensus 312 al~~~--~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~-------~~~~~~~~ 375 (439)
T 3dxv_A 312 VLETI--DR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRG----RGLACGMELVCDRQSR-------EPARAETA 375 (439)
T ss_dssp HHHHH--HH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEEEETTTT-------EECHHHHH
T ss_pred HHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEecCcccc-------CCCHHHHH
Confidence 44433 11 23344555555555555543 455554433 3455555543211000 00011245
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++.+.|.+ .||.++++.. .++++||++++.++++|+++++++|++++.
T Consensus 376 ~~~~~l~~-~Gv~v~~~~~-------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 423 (439)
T 3dxv_A 376 KLIYRAYQ-LGLVVYYVGM-------------------------------NGNVLEFTPPLTITETDIHKALDLLDRAFS 423 (439)
T ss_dssp HHHHHHHH-HTEECEEEST-------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCcEEeecCC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 67788866 5999986521 138899999999999999999999999988
Q ss_pred hhhh
Q 043646 522 YGHR 525 (625)
Q Consensus 522 ~~~~ 525 (625)
+..+
T Consensus 424 ~~~~ 427 (439)
T 3dxv_A 424 ELSA 427 (439)
T ss_dssp TGGG
T ss_pred HHhc
Confidence 7544
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=205.92 Aligned_cols=329 Identities=17% Similarity=0.110 Sum_probs=205.4
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CC--CCCCcEEE--eCChHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GG--GQADAIIF--CGAGTTAAIK 154 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~--~~~~~vif--t~sGttaal~ 154 (625)
|+|.....++++.+.+++.+.+... ..+ .|... ....++++.+++++ +. +++ +|+| | +|+++++.
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~~----~g~~~lr~~la~~~~~~~~~~~-~v~~~~~-~g~~~a~~ 105 (394)
T 2ay1_A 36 YKDATGHTPIMRAVHAAEQRMLETE--TTK--TYAGL----SGEPEFQKAMGELILGDGLKSE-TTATLAT-VGGTGALR 105 (394)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCCCS----SCCHHHHHHHHHHHHGGGCCGG-GEEEEEE-EHHHHHHH
T ss_pred eeCCCCCccCcHHHHHHHHHhcCCc--ccC--CCCCC----CCcHHHHHHHHHHHhCCCCCcc-cEEEEec-CCchhHHH
Confidence 4454444567788999987765320 011 11111 11345777777776 44 444 7888 8 78888888
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.++. .+.+||+ |+++.+.|+++...++..|++++.++.+ .++.+|+++|++++++. .+
T Consensus 106 ~~~~~~~-------------~~~~gd~--vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~ 168 (394)
T 2ay1_A 106 QALELAR-------------MANPDLR--VFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA--KK 168 (394)
T ss_dssp HHHHHHH-------------HHCTTCC--EEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC--CT
T ss_pred HHHHHHH-------------hcCCCCE--EEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC--CC
Confidence 8877652 1247886 8888899999988888899999999985 45678999999999741 12
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCCCCCCC-cEEEEcCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSRNIDGY-DAIFLATHKFLGGP 303 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~~~~~~-D~v~~S~hK~lggp 303 (625)
+++++++++++||||.+.| +++|+++|++||+++|+|++++..... ..+..+...+. ++++.|++|++|.|
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 4688888999999999976 557899999999999999998754321 11111100022 36677999999733
Q ss_pred C-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHHHH-HHHHHHHH-HHh--h
Q 043646 304 G-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIVQM-IRAALAFW-VKE--Y 374 (625)
Q Consensus 304 ~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~-~~aal~~~-~~~--~ 374 (625)
+ .+|++++ ++++.. .+.. .... ..+...++ +.+.+. +.++++.. +.+ .
T Consensus 249 G~riG~~~~~~~~~~~~~--~l~~--------------------~~~~-~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~ 305 (394)
T 2ay1_A 249 RERTGCLLALCADAATRE--LAQG--------------------AMAF-LNRQTYSFPPFHGAKIVSTVLTTPELRADWM 305 (394)
T ss_dssp GGCEEEEEEECSSHHHHH--HHHH--------------------HHHH-HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHH--HHHH--------------------HHHH-HHhhhcCCCChHHHHHHHHHhcChHHHHHHH
Confidence 2 3699998 444310 0000 0000 01111222 222221 12222211 000 1
Q ss_pred cCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhc
Q 043646 375 IGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLF 451 (625)
Q Consensus 375 ~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~ 451 (625)
...+.+.++.+.+++++.+.|.++. ++++..+ ..+++.+.-. ....+.+.| +++
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~------------------~~~~~~~~l-~~~ 362 (394)
T 2ay1_A 306 AELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE----HRGMFSRLGA------------------TPEQVKRIK-EEF 362 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH----CCSSEEECCC------------------CHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC----CceEEEeeCC------------------CHHHHHHHH-HhC
Confidence 2356777788888888888887652 3444433 2345544322 134565555 558
Q ss_pred CeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 452 GIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 452 gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
||.+++| +||+++ +++++|+++++++|+++
T Consensus 363 gi~v~~~-------------------------------------~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 363 GIYMVGD-------------------------------------SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp CEECCTT-------------------------------------CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred CEEecCC-------------------------------------CeEEee-cCCHhhHHHHHHHHHHc
Confidence 9998731 599998 57999999999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-21 Score=199.53 Aligned_cols=292 Identities=14% Similarity=0.093 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH---HH
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL---SW 198 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~ 198 (625)
...++++++++++|.+. . +++++|+.+ +..++.++ ..+||+.+|++++..|++... ..
T Consensus 48 ~~~~l~~~la~~~~~~~--~-i~~~~G~~a-~~~al~~~---------------~~~gd~~~vi~~~~~~~~~~~~~~~~ 108 (357)
T 3lws_A 48 IIEPFEQKFADVLGMDD--A-VFFPSGTMA-QQVALRIW---------------SDETDNRTVAYHPLCHLEIHEQDGLK 108 (357)
T ss_dssp THHHHHHHHHHHHTCSE--E-EEESCHHHH-HHHHHHHH---------------HHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred HHHHHHHHHHHHhCCCc--E-EEecCcHHH-HHHHHHHH---------------hhcCCCcEEEecccceeeeeccchhh
Confidence 45678999999999842 3 444477654 45555554 245553358888888876543 23
Q ss_pred HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccC---HHHHHHHHHHcCCEEEEeccCcC
Q 043646 199 RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 199 ~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~---l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|++++.++. +++.+|+++|+++ .++++|++++++||| |.+.+ +++|+++|++||+++|+|+|++.
T Consensus 109 ~~~g~~~~~v~~-~~~~~d~~~l~~~-------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~ 180 (357)
T 3lws_A 109 ELHPIETILVGA-ADRLMTLDEIKAL-------PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLF 180 (357)
T ss_dssp HHSSCEEEECSC-TTSCCCHHHHHTC-------CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHH
T ss_pred hccCcEEEEecC-CCCCcCHHHHhcC-------cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhh
Confidence 456899888884 4567999998876 138999999999998 98875 88999999999999999999761
Q ss_pred ---CCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 ---PYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 ---g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+........+. ..+|+++.|+||+|++|.| |+++.++++.. .+... ...
T Consensus 181 ~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~--~~~~~------------------------~~~ 232 (357)
T 3lws_A 181 EMLPYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQ--TARIW------------------------KRR 232 (357)
T ss_dssp HHHHHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHH--HHHHH------------------------HHH
T ss_pred hhhhhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHH--HHHHH------------------------HHH
Confidence 11111111111 2579999999999988988 99988887632 11100 000
Q ss_pred hcCCC--hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEe-CCCCCCCcceEEEEeccCCCCCCc
Q 043646 352 ENGGT--PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVL-GNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 352 ~~~gt--~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~-~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
+..+. .+..+. +++..+ .+. .+.+ ++..++++++.+.|.++|++++. .+. ...++.+.+ +...
T Consensus 233 ~~~~~~~~~~~~~--~~~~~l-~~~--~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~~---~~~~~~~~~-~~~~---- 298 (357)
T 3lws_A 233 YGGDLISLYPYIV--SADYYY-ELR--KDRM-GQYYEQAKQLAEQFNALPGVHTTPEVP---VSNMFHLHF-DGQA---- 298 (357)
T ss_dssp TTCCCSCCHHHHH--HHHHHH-HHH--TTCH-HHHHHHHHHHHHHHHTSTTEEEESSSC---SSSEEEEEE-ESCH----
T ss_pred hcCCcccchHHHH--HHHHHH-HHH--HHHH-HHHHHHHHHHHHHHHhCCCCeeccCCC---cceEEEEEe-cCCh----
Confidence 00111 122221 111111 111 1122 23455678899999999999985 332 234443333 3210
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC---CC
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY---MS 505 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~---~t 505 (625)
..+..++.+.|.+ +||.+++|..+. + ..+++|++++.. .+
T Consensus 299 --------~~~~~~~~~~l~~-~Gi~v~~g~~~~-~---------------------------~~~~~r~~i~~~~~~~~ 341 (357)
T 3lws_A 299 --------ADISPKLEQVQEE-TGLGFVGYLVDK-D---------------------------GYCSTEISVGDAYGELD 341 (357)
T ss_dssp --------HHHHHHHHHHHHH-HCEESCSCCEEC-S---------------------------SEEEEEEEBCTTGGGSC
T ss_pred --------HHHHHHHHHHHHh-cCeEEecccccC-C---------------------------CceEEEEEecchhhhcC
Confidence 0013567777754 799999885432 1 136899998743 57
Q ss_pred HHHHHHHHHHHHHH
Q 043646 506 NEEFEFILAALEFI 519 (625)
Q Consensus 506 ~edid~ll~aL~~~ 519 (625)
.++++..++.|.+.
T Consensus 342 ~~~l~~al~~l~~a 355 (357)
T 3lws_A 342 QQTRDAGFARLRQA 355 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=202.21 Aligned_cols=333 Identities=12% Similarity=0.015 Sum_probs=209.8
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CC-----CCCCcEEE--eCChHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GG-----GQADAIIF--CGAGTTA 151 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~-----~~~~~vif--t~sGtta 151 (625)
|+|..+..++++.+.+++.+.+... ...+ .|... ....++++.+++++ +. +++ +|++ | +|+++
T Consensus 40 ~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~--~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~t-~gg~~ 110 (412)
T 1ajs_A 40 YRTDDCQPWVLPVVRKVEQRIANNS-SLNH--EYLPI----LGLAEFRTCASRLALGDDSPALQEK-RVGGVQS-LGGTG 110 (412)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHTCT-TCCC--CCCCT----TCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHHHH
T ss_pred ecCCCCCccccHHHHHHHHHhhhCh-hhcc--CCCCC----CCCHHHHHHHHHHHhcCCCCccCCC-cEEEEEC-CCcHH
Confidence 5555555567788999988776220 0111 11111 11356778888887 43 344 7988 8 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-----CceEEEEcCCCCchhHHHHHHcCCe-EEEEecC--CCCCCCHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-----ERWVVFLGPYEHHSNLLSWRQSLAE-VVEIGLD--DNGLLDIEALRS 223 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-----d~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~--~~~~ld~~~L~~ 223 (625)
++..++..+. .+.+| |+ |+++.++|+++...++..|++ ++.++.+ .++.+|+++|++
T Consensus 111 a~~~~~~~~~-------------~~~~g~~~~~d~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 111 ALRIGAEFLA-------------RWYNGTNNKDTP--VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp HHHHHHHHHH-------------HHSSSSSCCCSC--EEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHH-------------HhCcCcCCCCCe--EEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 8888755331 13577 76 888889999998888889999 9999984 456789999999
Q ss_pred HHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCc-CCCcc-----ccCCCCC-CCCCcEEE
Q 043646 224 QLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS-GPYVK-----INLRSRN-IDGYDAIF 293 (625)
Q Consensus 224 ~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~-~g~~~-----id~~~~~-~~~~D~v~ 293 (625)
++++. .++++++++++++||||.+.+ +++|+++|++||+++|+|++++ +++.. ..+..+. ....++++
T Consensus 176 ~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 176 DLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 99741 236789889999999999966 5689999999999999999955 33221 1121110 01224788
Q ss_pred EcCCCCCCCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC-hhHHHH-HHHHH
Q 043646 294 LATHKFLGGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT-PQIVQM-IRAAL 367 (625)
Q Consensus 294 ~S~hK~lggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~-~~aal 367 (625)
.|++|.+|.++ .+|++++ +++... .+. ..... ..+...++ +.+.+. +.+++
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~--~~~--------------------~~~~~-~~~~~~~~~~~~~~~a~~~~l 310 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSIL--RVL--------------------SQMQK-IVRVTWSNPPAQGARIVARTL 310 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHH--HHH--------------------HHHHH-HHHTTTSSCCSHHHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHH--HHH--------------------HHHHH-HHhcccCCCChHHHHHHHHHH
Confidence 89999997433 3799998 655310 000 00000 01112222 222222 12222
Q ss_pred HHHH-Hh--hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChH
Q 043646 368 AFWV-KE--YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGP 441 (625)
Q Consensus 368 ~~~~-~~--~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~ 441 (625)
.... .+ ....+.+.++.+.+++++.+.|.+++ ++++..+ ..+++.|.-. +..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~ 368 (412)
T 1ajs_A 311 SDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD----QIGMFSFTGL------------------NPK 368 (412)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH----CCSSEEECCC------------------CHH
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC----CCceEEEeCC------------------CHH
Confidence 2110 00 12356778888888999999998763 3555433 2345544321 133
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.+...| +++||.+++ + +||+++. .+++|+++++++|+++++
T Consensus 369 ~~~~~l-~~~gv~v~~------------------------------------~-~Ris~~~-~~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 369 QVEYLI-NQKHIYLLP------------------------------------S-GRINMCG-LTTKNLDYVATSIHEAVT 409 (412)
T ss_dssp HHHHHH-HTTCEECCT------------------------------------T-SEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCEEecC------------------------------------C-cEEEeee-CCHHHHHHHHHHHHHHHH
Confidence 444444 568999873 1 5999984 489999999999999876
Q ss_pred h
Q 043646 522 Y 522 (625)
Q Consensus 522 ~ 522 (625)
+
T Consensus 410 ~ 410 (412)
T 1ajs_A 410 K 410 (412)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-19 Score=192.02 Aligned_cols=334 Identities=15% Similarity=0.112 Sum_probs=206.4
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.|.+++.+.+.... +.+.. + ..+...++++++++++|. + .++|+++|+.+
T Consensus 76 ~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~g~--~-~v~~~~sGseA 145 (439)
T 2oat_A 76 RKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRA-F-----YNNVLGEYEEYITKLFNY--H-KVLPMNTGVEA 145 (439)
T ss_dssp CEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-CCCTT-S-----EESSHHHHHHHHHHHHTC--S-EEEEESSHHHH
T ss_pred CEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-cccCc-c-----CCHHHHHHHHHHHHhcCC--C-EEEEeCCHHHH
Confidence 358887652 2267899999999886532 11111 1 123456788899999873 3 78998555554
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCCCCCCCH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDDNGLLDI 218 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~~~~ld~ 218 (625)
+..++.++... ..-..++.+| ++ +|+..+..|.+....+...| .+++.+|.+ |+
T Consensus 146 -~~~al~~~~~~------~~~~~g~~~g~~~-vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~ 212 (439)
T 2oat_A 146 -GETACKLARKW------GYTVKGIQKYKAK-IVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DL 212 (439)
T ss_dssp -HHHHHHHHHHH------HHHTTCCCTTCCE-EEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CH
T ss_pred -HHHHHHHHHHH------hhhccCCCCCCCe-EEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CH
Confidence 55554443100 0000012355 43 44444455555554555444 467777753 89
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCcE
Q 043646 219 EALRSQLELYKAAKRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYDA 291 (625)
Q Consensus 219 ~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D~ 291 (625)
++|+++++. +++++|+++.+++++|.+. ++++|.++|++||+++|+|+++. ++... ..+...+. .+|+
T Consensus 213 ~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~-~~Di 287 (439)
T 2oat_A 213 PALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDI 287 (439)
T ss_dssp HHHHHHTTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSE
T ss_pred HHHHHHhCC----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCC-CCcE
Confidence 999999852 4688988888888899876 79999999999999999999985 22111 11111111 4687
Q ss_pred EEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH
Q 043646 292 IFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW 370 (625)
Q Consensus 292 v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~ 370 (625)
+ +++|++++. ..+|++++++++ .+.+.+...+ .+ + .+++.......++++.+
T Consensus 288 ~--t~sK~l~~G~~~~G~v~~~~~~--~~~l~~~~~~-~t---------------------~-~~~~~~~aaa~aal~~~ 340 (439)
T 2oat_A 288 V--LLGKALSGGLYPVSAVLCDDDI--MLTIKPGEHG-ST---------------------Y-GGNPLGCRVAIAALEVL 340 (439)
T ss_dssp E--EECGGGGTTSSCCEEEEECHHH--HTTSCTTSSC-CS---------------------S-TTCHHHHHHHHHHHHHH
T ss_pred E--EecccccCCCCCeEEEEECHHH--HhccCCCCcc-cC---------------------C-CcCHHHHHHHHHHHHHH
Confidence 7 556999863 348999999887 3344321110 00 0 12222222233445544
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh
Q 043646 371 VKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN 448 (625)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 448 (625)
. . +.+.++.+++++++.+.|.++ +.+.... ..+.++.+.+.... ..+..++.+.|.
T Consensus 341 ~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~----~~g~~~~v~l~~~~-------------~~~~~~l~~~l~ 398 (439)
T 2oat_A 341 E--E---ENLAENADKLGIILRNELMKLPSDVVTAVR----GKGLLNAIVIKETK-------------DWDAWKVCLRLR 398 (439)
T ss_dssp H--H---TTHHHHHHHHHHHHHHHHTTSCTTTEEEEE----EETTEEEEEECCCS-------------SCCHHHHHHHHH
T ss_pred h--h---hhHHHHHHHHHHHHHHHHHHhcCCCcEEEE----eeeeEEEEEEecCc-------------cHHHHHHHHHHH
Confidence 2 1 245678888899999999876 2221111 13455555443210 123567888886
Q ss_pred hhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 449 DLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 449 ~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+ +||.++++ .++++||++++.+|++|+++++++|++++.+
T Consensus 399 ~-~Gv~v~~~---------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 399 D-NGLLAKPT---------------------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp H-TTEECCBS---------------------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCeEEecC---------------------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 5 69999752 1378999999999999999999999988754
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-21 Score=206.06 Aligned_cols=327 Identities=16% Similarity=0.122 Sum_probs=205.5
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEE--eCChHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG------GQADAIIF--CGAGTTA 151 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~------~~~~~vif--t~sGtta 151 (625)
|+|..+..++++.+.+++.+.+... ..+ .|... ....++++.++++++. +++ +|++ | +|+++
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~~-~g~~~ 105 (396)
T 2q7w_A 36 YKDETGKTPVLTSVKKAEQYLLENE--TTK--NYLGI----DGIPEFGRCTQELLFGKGSALINDK-RARTAQT-PGGTG 105 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCCCT----TCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-SHHHH
T ss_pred ccCCCCCccCcHHHHHHHHhhcCcc--ccc--CCCCC----CCCHHHHHHHHHHHhcCCCCccccc-cEEEEec-ccchh
Confidence 6666666677789999987765321 111 11111 1134577777777622 244 7887 8 78888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~ 229 (625)
++..++.++. .+.+||+ |++..+.|+++...++..|++++.++.+ .++.+|+++|++++++.
T Consensus 106 a~~~~~~~~~-------------~~~~gd~--Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 169 (396)
T 2q7w_A 106 ALRVAADFLA-------------KNTSVKR--VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA- 169 (396)
T ss_dssp HHHHHHHHHH-------------HHSCCCE--EEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC-
T ss_pred hHHHHHHHHH-------------HhCCCCE--EEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC-
Confidence 8888876652 1357885 8888899999988888899999999985 45678999999999731
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc-----ccCCCCCC-CCCcEEEEcCCCCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK-----INLRSRNI-DGYDAIFLATHKFL 300 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~-----id~~~~~~-~~~D~v~~S~hK~l 300 (625)
.++++++++++++||||.+.+ +++|+++|++||+++|+|++++..... ..+..+.. ...++++.|++|++
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 248 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF 248 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc
Confidence 124788999999999999976 557999999999999999997753221 11211100 12357788999999
Q ss_pred CCCC-CceEEEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh---
Q 043646 301 GGPG-TPGILLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE--- 373 (625)
Q Consensus 301 ggp~-g~G~l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~--- 373 (625)
|.|+ .+|++++ +++.. ..+.. .+.. ..+...++++..+... +.+++ ..
T Consensus 249 ~~~G~riG~~~~~~~~~~~~--~~~~~--------------------~~~~-~~~~~~~~~~~~~~~a-~~~~l-~~~~l 303 (396)
T 2q7w_A 249 GLYNERVGACTLVAADSETV--DRAFS--------------------QMKA-AIRANYSNPPAHGASV-VATIL-SNDAL 303 (396)
T ss_dssp TCGGGCCEEEEEECSSHHHH--HHHHH--------------------HHHH-HHHTTTSSCCHHHHHH-HHHHH-TSHHH
T ss_pred cccccccceEEEEcCCHHHH--HHHHH--------------------HHHH-HHhhccCCCCcHHHHH-HHHHh-cChhh
Confidence 7332 2799987 34220 00000 0000 0111223333333221 12221 01
Q ss_pred ----hcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 374 ----YIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 374 ----~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
....+.+.++.+.+++++.+.|.++. ++++..+ ..+++.|.-. +...+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~~~~~~ 361 (396)
T 2q7w_A 304 RAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK----QNGMFSFSGL------------------TKEQVLRL 361 (396)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH----CCSSEEECCC------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC----CCceEEEecC------------------CHHHHHHH
Confidence 12345666777778888888887763 2554433 2345544321 13345555
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
| +++||.+++ + +||+++.. +++|+++++++|+++
T Consensus 362 l-~~~gv~v~~------------------------------------~-~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 362 R-EEFGVYAVA------------------------------------S-GRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp H-HHHCEECCT------------------------------------T-CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred H-HhcCeeecC------------------------------------C-ceEEEeec-CHHHHHHHHHHHHhc
Confidence 5 558999873 1 59999854 899999999999875
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-18 Score=187.77 Aligned_cols=358 Identities=11% Similarity=0.098 Sum_probs=201.2
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+..... .. .....+...+++++++++++.+.+ |+||++|+.+
T Consensus 50 ~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~-----~~~~~~~~~~la~~l~~~~~~~~~--v~~~~ggseA- 119 (452)
T 3n5m_A 50 RYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FP-----MSQSHEPAIKLAEKLNEWLGGEYV--IFFSNSGSEA- 119 (452)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CC-----TTSEEHHHHHHHHHHHHHHTSCEE--EEEESSHHHH-
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cc-----cccCCHHHHHHHHHHHHhCCCCce--EEEeCchHHH-
Confidence 48887544 45578999999998864321 11 011235667889999999986544 8898555554
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCCCC---CCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDDNG---LLD 217 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~~~---~ld 217 (625)
+..++.++... ....+-.++++ +|+..+..|..........|. .+..++..... .-|
T Consensus 120 ~~~al~~~~~~-------~~~~g~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (452)
T 3n5m_A 120 NETAFKIARQY-------YAQKGEPHRYK-FMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIE 191 (452)
T ss_dssp HHHHHHHHHHH-------HHTTTCTTCCE-EEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTT
T ss_pred HHHHHHHHHHH-------HHhcCCCCCCE-EEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCC
Confidence 55444443100 00000013443 444444445444333332221 24455542211 112
Q ss_pred ---------HHHHHHHHHHhhhCCCCeEEEEecc-cCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--cc
Q 043646 218 ---------IEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--IN 280 (625)
Q Consensus 218 ---------~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id 280 (625)
+++|++++++ ...+++++|+++.+ +| ||.+.| +++|.++|++||+++|+|++++ ++... ..
T Consensus 192 ~~~~~~~~~~~~le~~l~~-~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~ 269 (452)
T 3n5m_A 192 RENIYDVECVKEVDRVMTW-ELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFG 269 (452)
T ss_dssp TSCGGGCHHHHHHHHHHHH-HCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSG
T ss_pred chhhHHHHHHHHHHHHHHh-cCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccch
Confidence 8999999972 11146788999988 89 999887 9999999999999999999977 33221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQ 358 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~ 358 (625)
....+. .+|++++| |.+++. ..+|++++++++. +.+.+.. ..+.+ ..... .+.+.
T Consensus 270 ~~~~~~-~~di~t~s--K~l~~G~~~ig~~~~~~~i~--~~~~~~~-~~~~~-----------------~~~~t~~~~~~ 326 (452)
T 3n5m_A 270 FMNYDV-KPDIITMA--KGITSAYLPLSATAVKREIY--EAFKGKG-EYEFF-----------------RHINTFGGNPA 326 (452)
T ss_dssp GGGTTC-CCSEEEEC--GGGGTTSSCCEEEEEEHHHH--GGGCSSS-TTCSC-----------------CCCCSSTTCHH
T ss_pred hhhcCC-CCCEEeec--ccccCCCcceEEEEECHHHH--HHHhhcc-CCCCc-----------------cccCCCCCCHH
Confidence 111111 46877765 988764 5689999999883 2221100 00000 00000 11222
Q ss_pred HHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 359 IVQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
......++++.. +... .+.+.+....+.+.+.+.+..+|.+..+.+ .+.++.+.+..+.. ....
T Consensus 327 ~~aaa~aal~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~---------~~~~ 391 (452)
T 3n5m_A 327 ACALALKNLEII--ENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG----KGLLVGIELVNDKE---------TKEP 391 (452)
T ss_dssp HHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----SSSCEEEEEEEETT---------TTEE
T ss_pred HHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE----EEEEEEEEEecCCc---------ccCC
Confidence 222223444443 2222 334444444444455544556666654433 23445544432110 0001
Q ss_pred CC---hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 438 LH---GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 438 l~---~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
++ ...+++.|.+ .||.++++..|... .++++||++++.+|++|++++++
T Consensus 392 ~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~---------------------------~~~~iRi~~~~~~t~e~i~~~l~ 443 (452)
T 3n5m_A 392 IDNDKIASVVNACKE-KGLIIGRNGMTTAG---------------------------YNNILTLAPPLVISSEEIAFVIG 443 (452)
T ss_dssp CCHHHHHHHHHHHHH-TTEECEECTTSSTT---------------------------CCCEEEECCCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-CCcEEeecCcccCC---------------------------CCCEEEEECCCCCCHHHHHHHHH
Confidence 11 1357777765 69999987655311 24899999999999999999999
Q ss_pred HHHHHHHh
Q 043646 515 ALEFIAAY 522 (625)
Q Consensus 515 aL~~~~~~ 522 (625)
+|++++.+
T Consensus 444 ~l~~~l~~ 451 (452)
T 3n5m_A 444 TLKTAMER 451 (452)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988753
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=187.24 Aligned_cols=333 Identities=14% Similarity=0.142 Sum_probs=197.3
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+ .+..++.|.+++.+.+.... +.... + ..+...++++++++++|. + +|+|+++|+.
T Consensus 65 ~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~g~--~-~v~~~~sGse- 133 (433)
T 1z7d_A 65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSRA-F-----FSVPLGICERYLTNLLGY--D-KVLMMNTGAE- 133 (433)
T ss_dssp CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCTT-S-----EEHHHHHHHHHHHHHHTC--S-EEEEESSHHH-
T ss_pred CEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccCC-c-----CCHHHHHHHHHHHhhcCC--C-eEEEeCCHHH-
Confidence 45888655 22367899999999886532 21111 1 234567788999999974 3 7999855555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCC-CceEEEEcCCC-CchhHHHHHHcC------------CeEEEEecCCCCCCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYE-HHSNLLSWRQSL------------AEVVEIGLDDNGLLD 217 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~-h~s~~~~~~~~G------------~~vv~v~~~~~~~ld 217 (625)
++..++.++... .....++.+| ++ |++.... |.+....+...| ..++.+|.+ |
T Consensus 134 A~~~al~~a~~~------~~~~~g~~~gr~~--vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d 200 (433)
T 1z7d_A 134 ANETAYKLCRKW------GYEVKKIPENMAK--IVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----D 200 (433)
T ss_dssp HHHHHHHHHHHH------HHHTSCCCTTCCE--EEEETTC--------------------------CEEEECTT-----C
T ss_pred HHHHHHHHHHHH------hhhccCCCCCCCe--EEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----C
Confidence 455555443100 0000012456 54 5555544 444443343333 345556543 8
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEecccCcccccc----CHHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCCCCCCCc
Q 043646 218 IEALRSQLELYKAAKRPMLGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSRNIDGYD 290 (625)
Q Consensus 218 ~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~----~l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~~~~~~D 290 (625)
+++|+++++. +++++|+++.+++++|.+. ++++|.++|++||+++|+|++++ ++... ..+...+. .+|
T Consensus 201 ~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~-~~d 275 (433)
T 1z7d_A 201 LEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNV-KPD 275 (433)
T ss_dssp HHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTC-CCS
T ss_pred HHHHHHHhCC----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCC-CCC
Confidence 9999999952 5788999888888899876 79999999999999999999986 22211 11111111 578
Q ss_pred EEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHH
Q 043646 291 AIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369 (625)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~ 369 (625)
+++ ++|++++. ..+|++++++++ .+.+.+...+ .+ + .+++.......++++.
T Consensus 276 i~t--~sK~l~~G~~~~G~v~~~~~~--~~~l~~~~~~-~t---------------------~-~~~~~~~aaa~aal~~ 328 (433)
T 1z7d_A 276 VIL--LGKALSGGHYPISAVLANDDI--MLVIKPGEHG-ST---------------------Y-GGNPLAASICVEALNV 328 (433)
T ss_dssp EEE--ECGGGGTTSSCCEEEEECHHH--HTTCCTTCCC-CT---------------------T-TTCHHHHHHHHHHHHH
T ss_pred EEE--ECccccCCCCCeEEEEECHHH--Hhhhcccccc-cc---------------------C-CCCHHHHHHHHHHHHH
Confidence 875 45999853 248999999887 3344321100 00 0 1223222233444554
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+. . +.+.++.+++.+++.+.|.+ ++.+....+ .+.++.+.+... ..+...+.+
T Consensus 329 ~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i~~~~~--------------~~~~~~~~~ 385 (433)
T 1z7d_A 329 LI--N---EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAIEFKNE--------------LVNVLDICL 385 (433)
T ss_dssp HH--H---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEECTT--------------TCCHHHHHH
T ss_pred HH--h---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEEEEccC--------------hhHHHHHHH
Confidence 42 1 23455666677777777654 344332221 345555544321 013567888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.|.+ .||.++++. ++++||++++.+|++|+++++++|++++.+.
T Consensus 386 ~l~~-~Gv~v~~~~---------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 386 KLKE-NGLITRDVH---------------------------------DKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp HHHH-TTEECCEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCeEEecCC---------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 8865 699997530 3789999999999999999999999987653
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-19 Score=190.83 Aligned_cols=353 Identities=10% Similarity=0.008 Sum_probs=205.2
Q ss_pred eEeccCC------CCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHT------ASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~------~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|.. ..+..++.|.+++.+.+.... .+.. .....+...++++.++++++.+.+ +|+|| +|.++
T Consensus 50 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggse 121 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPG----FQYGHPLSFQLAEKITDLTPGNLN-HVFFT-DSGSE 121 (449)
T ss_dssp CEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCS----SSCCCHHHHHHHHHHHTTSSTTEE-EEEEE-SSHHH
T ss_pred CEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Cccc----cccCCHHHHHHHHHHHHhCCCCCC-EEEEc-CcHHH
Confidence 3588875 344568899999999886532 1110 011234566788999999987655 89999 45555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEE-cCCCCchhHHHHHHcCC------------eEEEEecCCCC----
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFL-GPYEHHSNLLSWRQSLA------------EVVEIGLDDNG---- 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~------------~vv~v~~~~~~---- 214 (625)
++..++.++.... +. .+-.++++ |++ .+.+|.+....+...|. .++.++.+...
T Consensus 122 a~~~al~~~~~~~----~~---~g~~~~~~--vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 192 (449)
T 3a8u_X 122 CALTAVKMVRAYW----RL---KGQATKTK--MIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAY 192 (449)
T ss_dssp HHHHHHHHHHHHH----HH---TTCTTCCE--EEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTT
T ss_pred HHHHHHHHHHHHH----Hh---cCCCCCCE--EEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCcc
Confidence 5666665541000 00 00014454 555 55555555545554442 35566543211
Q ss_pred -CCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--
Q 043646 215 -LLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK-- 278 (625)
Q Consensus 215 -~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~-- 278 (625)
.+| +++|+++|++. ..+++++|+++..+|+||.+.| +++|.++|++||+++|+|++++ ++...
T Consensus 193 ~~~d~~~~~~~~~~~le~~l~~~-~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 271 (449)
T 3a8u_X 193 SRGMPKEGGIALADELLKLIELH-DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSM 271 (449)
T ss_dssp CSSSCSSSHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred ccCChHHHHHHHHHHHHHHHHhc-CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcc
Confidence 246 99999999742 0125688888877788999888 9999999999999999999984 55321
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
..+...+. .+|++++ +|+|++. ..+|++++++++.. .+.+...+... .........+.+
T Consensus 272 ~~~~~~~~-~~di~s~--sK~l~~G~~~~G~~~~~~~~~~--~l~~~~~~~~~---------------~~~~~~~t~~~~ 331 (449)
T 3a8u_X 272 FGADSFGV-TPDLMCI--AKQVTNGAIPMGAVIASTEIYQ--TFMNQPTPEYA---------------VEFPHGYTYSAH 331 (449)
T ss_dssp SHHHHHTC-CCSEEEE--CGGGGTTSSCCEEEEEEHHHHH--HHHTCSSCTTS---------------CSSCCCCTTTTC
T ss_pred hhhhhcCC-CCCEEEE--cccccCCCCceEEEEECHHHHH--HhhccCccccc---------------ccccccCCCccc
Confidence 11111111 4687754 5999751 12899999987632 22110000000 000000011112
Q ss_pred hH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCcccccc
Q 043646 358 QI-VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIE 433 (625)
Q Consensus 358 ~~-~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~ 433 (625)
++ ...+.++++.+ +. +.+.++.+++.+++++.|.++ +.+....+ .+.++.+.+.....
T Consensus 332 ~~~~aa~~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~----~g~~~~i~~~~~~~--------- 393 (449)
T 3a8u_X 332 PVACAAGLAALCLL--QK---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRN----FGLAGAIQIAPRDG--------- 393 (449)
T ss_dssp HHHHHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE----ETTEEEEEECCBTT---------
T ss_pred HHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEee----eEEEEEEEEecCcc---------
Confidence 22 22223445443 21 245667777788888887664 33322211 33455554432110
Q ss_pred CCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 043646 434 RNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFIL 513 (625)
Q Consensus 434 ~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll 513 (625)
....+..++.+.|.+ +||.++++ .+++||++++.++++|+++++
T Consensus 394 -~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iRis~~~~~t~~~i~~~l 437 (449)
T 3a8u_X 394 -DAIVRPFEAGMALWK-AGFYVRFG----------------------------------GDTLQFGPTFNSKPQDLDRLF 437 (449)
T ss_dssp -BSSHHHHHHHHHHHH-HTEECEEE----------------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred -cccccHHHHHHHHHH-CCcEEecC----------------------------------CCEEEEECCCcCCHHHHHHHH
Confidence 000012358888865 69999854 167999999999999999999
Q ss_pred HHHHHHHHh
Q 043646 514 AALEFIAAY 522 (625)
Q Consensus 514 ~aL~~~~~~ 522 (625)
++|++++.+
T Consensus 438 ~~l~~~l~~ 446 (449)
T 3a8u_X 438 DAVGEVLNK 446 (449)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-19 Score=193.86 Aligned_cols=362 Identities=13% Similarity=0.051 Sum_probs=191.7
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+.... ..+. .....+...+++++++++++.+.+ +|+|| +|.+++
T Consensus 30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~ea 101 (430)
T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAARLP-FVHG-----SQFSSDVLEEYAGRLARFVGLPTF-RFWAV-SGGSEA 101 (430)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-CCCT-----TTCEEHHHHHHHHHHHHHTTCTTC-EEEEE-SSHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhcc-cccc-----cccCCHHHHHHHHHHHHhCCCCCC-EEEEe-CcHHHH
Confidence 47887654 3348899999988875321 1111 011234567888999999998766 89998 455555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc-CC--------------eEEEEecCCC---C
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS-LA--------------EVVEIGLDDN---G 214 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G~--------------~vv~v~~~~~---~ 214 (625)
+..++.++... .+. .+-.+++ .|++....|+......... +. .+..++.+.. +
T Consensus 102 ~~~al~~~~~~----~~~---~g~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
T 3i4j_A 102 TESAVKLARQY----HVE---RGEPGRF--KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNG 172 (430)
T ss_dssp HHHHHHHHHHH----HHH---TTCTTCC--EEEEETTC-------------------------CGGGSCEECCCCTTSCH
T ss_pred HHHHHHHHHHH----HHh---cCCCCCc--EEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchh
Confidence 55555443100 000 0001233 3666555555543332222 21 3334443322 2
Q ss_pred CCCHHHHHHHHHHhhhCCCCeEEEEecccC-ccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCCCC-C
Q 043646 215 LLDIEALRSQLELYKAAKRPMLGSFSACSN-VTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLRSR-N 285 (625)
Q Consensus 215 ~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n-~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~~~-~ 285 (625)
..|+++|++++++. ..+++++|+++.++| ++|.+.+ +++|.++|++||+++|+|++++ ++... ...... +
T Consensus 173 ~~~~~~le~~l~~~-~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~ 251 (430)
T 3i4j_A 173 AEDAEGLRALLERE-GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSG 251 (430)
T ss_dssp HHHHTHHHHHHHHH-CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTT
T ss_pred hHHHHHHHHHHHhc-CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcC
Confidence 34678999999742 113567888888888 9999877 9999999999999999999977 33221 111111 1
Q ss_pred CCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMI 363 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~ 363 (625)
..+|++++| |.+++. ..+|++++++++.+ .+.+.. ..+ ..... .+++......
T Consensus 252 -~~~di~t~s--K~l~~G~~r~G~~~~~~~i~~--~~~~~~---~~~-----------------~~~~t~~~~~~~~aaa 306 (430)
T 3i4j_A 252 -VTPDIAVLG--KGLAAGYAPLAGLLAAPQVYE--TVMGGS---GAF-----------------MHGFTYAGHPVSVAAG 306 (430)
T ss_dssp -CCCSEEEEC--GGGTTTSSCCEEEEECHHHHH--HHHHTT---CBC-----------------CCCCTTTTCHHHHHHH
T ss_pred -CCCcEEEEc--ccccCCccccEEEEECHHHHH--HHhccC---Ccc-----------------cccCCCCCCHHHHHHH
Confidence 146777765 999853 34799999888732 111100 000 00000 1112222222
Q ss_pred HHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 364 RAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 364 ~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
.++++.. +... .+.+.+....+.+.+.+.+..+|++..+.+ .+.++.+......... .-...-...+
T Consensus 307 ~aal~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~------~~~~~~~~~~ 374 (430)
T 3i4j_A 307 LSVLDIV--EREDLTGAAKERGAQLLAGLQALQARFPQMMQVRG----TGLLLGVVLGDLATGQ------AFETPGIASR 374 (430)
T ss_dssp HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEC------------------CHHH
T ss_pred HHHHHHH--HcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEeccccccC------CCccHHHHHH
Confidence 3344443 1111 233333344444444444445566665543 2345555443211000 0000011356
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.+.|.+ .||.++++..+..+ ..++++||++++..+++++++++++|++++.+
T Consensus 375 ~~~~l~~-~Gv~v~~~~~~~~~--------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 375 IGAAALK-RGLITYPGSGAEPN--------------------------GRGDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp HHHHHHH-TTEECC-------------------------------------CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCEEEecccccCC--------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888865 79999876332211 02478999999999999999999999998765
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-21 Score=202.40 Aligned_cols=247 Identities=12% Similarity=0.062 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH-HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT-AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS 193 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt-aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (625)
.++....+.+.+..++.+++|.+.....+++ +|+| .++..++.+.. +. ..+++ .|+++...|.|
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV-~GaT~~~~a~~L~aar--------~~----~~~~~--~viv~r~aHkS 156 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVASCFVV-PMATGMSLTLCFLTLR--------HK----RPKAK--YIIWPRIDQKS 156 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCEEEEE-SSCHHHHHHHHHHHHH--------HH----CTTCC--EEEEECCCCHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCceEEEE-CCHHHHHHHHHHHHcc--------hh----hcCCC--EEEEECCcHHH
Confidence 4455667888999999999999866555777 5665 44444444331 11 12244 48888999999
Q ss_pred hHHHHHHcCCeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 194 NLLSWRQSLAEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 194 ~~~~~~~~G~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
+.+++...|+.++.|+. ++.+.+|+++|+++|+++. .+.+.+|+.+..++.+|.+.|+++|+++||+||+|+|||+
T Consensus 157 v~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~-~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~ 235 (450)
T 3bc8_A 157 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN 235 (450)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC-CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEEC
Confidence 99999999999888865 4467899999999998641 1234555555555557799999999999999999999999
Q ss_pred cCcCCCcccc-C--CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 271 AASGPYVKIN-L--RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 271 A~~~g~~~id-~--~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
||++-...+. + ..+..+++|+++.|+|||++.|.+.+++++++... ++.....+.|.
T Consensus 236 A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~-~~~~~~~~~g~------------------- 295 (450)
T 3bc8_A 236 AYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF-IQDISKMYPGR------------------- 295 (450)
T ss_dssp TTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHH-HHHHHHHSCSC-------------------
T ss_pred CCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHH-HHHHHHHhhcC-------------------
Confidence 9886433221 1 10001378999999999999999989999864431 11111111110
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGN 406 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~ 406 (625)
..+.|+ +.+ ...+......|++.+.++..++++++++.|++++ +.++++.
T Consensus 296 -----~s~Sps-L~l---~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~ 348 (450)
T 3bc8_A 296 -----ASASPS-LDV---LITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQT 348 (450)
T ss_dssp -----BCSHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred -----CcccHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCC
Confidence 111222 111 1111111334555666677788999999998887 8888764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=194.14 Aligned_cols=343 Identities=10% Similarity=0.001 Sum_probs=199.6
Q ss_pred eEeccCCC------CCcchHHHH-H-HHHH---hhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC-CCCCCcEEEe
Q 043646 78 LTYADHTA------SGRSLRYIE-D-YIIN---NVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG-GGQADAIIFC 145 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~-e-a~~~---~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g-~~~~~~vift 145 (625)
..|+|..+ .+..++.|. + ++.+ .+.... +.. . ....+...++++.++++++ .+.+ +|+||
T Consensus 54 ~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~---~~~-~---~~~~~~~~~la~~la~~~~~~~~~-~v~~~ 125 (449)
T 2cjg_A 54 RRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK---PSN-S---DVYSVAMARFVETFARVLGDPALP-HLFFV 125 (449)
T ss_dssp CEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC---CCT-T---TCCCHHHHHHHHHHHHHHCCTTCC-EEEEE
T ss_pred cEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC---CCC-c---ccCCHHHHHHHHHHHHhcCCCCCC-EEEEe
Confidence 46888733 344678999 8 9988 664321 111 0 0123456778889999997 3344 89999
Q ss_pred CChHHHHHHHHHHHh-cccccchhhhhhhhccCC-CCceEEEEcCCCCchhHHH-HHH--------cCC-----eEEEEe
Q 043646 146 GAGTTAAIKRLQEVM-GITVPSIMRDKLITSLRD-EERWVVFLGPYEHHSNLLS-WRQ--------SLA-----EVVEIG 209 (625)
Q Consensus 146 ~sGttaal~~l~~~l-~~~~~~~~~~~~~~~l~~-gd~~~Vlv~~~~h~s~~~~-~~~--------~G~-----~vv~v~ 209 (625)
++|+.+ +..++.+. .... . +......-++ +++ |++....|++.... +.. .+. .++.+|
T Consensus 126 ~~gseA-~~~aik~a~~~~~-~--~~~~~~~~~~~~~~--Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (449)
T 2cjg_A 126 EGGALA-VENALKAAFDWKS-R--HNQAHGIDPALGTQ--VLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAP 199 (449)
T ss_dssp SSHHHH-HHHHHHHHHHHHH-H--HHHHTTSCTTCCCE--EEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCC
T ss_pred CchHHH-HHHHHHHHHHHhc-c--cccccccccCCCCE--EEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEc
Confidence 555554 54444322 1000 0 0000000012 554 66665544443222 121 122 566666
Q ss_pred cCC--CC--------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-C
Q 043646 210 LDD--NG--------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-G 274 (625)
Q Consensus 210 ~~~--~~--------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~ 274 (625)
.+. .. ..++++|++++++. .+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ +
T Consensus 200 ~~d~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 277 (449)
T 2cjg_A 200 YMRPGLDEPAMAALEAEALRQARAAFETR--PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGC 277 (449)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHS--TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CCCchhhccccchhhHHHHHHHHHHHHhc--CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCC
Confidence 643 11 24567788888631 257899999988899998777 9999999999999999999988 4
Q ss_pred CCccc--cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh
Q 043646 275 PYVKI--NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 275 g~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
+.... .....+. .+|++++| |+| | +|++++++++ .+.+.+...+.+. ...
T Consensus 278 g~~g~~~~~~~~~~-~~di~t~s--K~l--~--iG~~~~~~~~--~~~l~~~~~~~~~-------------------~~~ 329 (449)
T 2cjg_A 278 GLTGTAWAYQQLDV-APDIVAFG--KKT--Q--VCGVMAGRRV--DEVADNVFAVPSR-------------------LNS 329 (449)
T ss_dssp TTTSSSSTHHHHTC-CCSEEEEC--GGG--S--SEEEEECGGG--GGSTTCTTTSTTS-------------------SCC
T ss_pred CccCcceeecccCC-CceEEEec--Ccc--c--EEEEEECHHH--hhhhhhcccCCcc-------------------ccc
Confidence 33211 1111111 56887665 998 4 6999999887 3333321111000 000
Q ss_pred c-CCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCc-EEEeCCCCCCCcceEEEEeccCCCCC
Q 043646 353 N-GGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQN-IQVLGNTSVKRQAILSFLVYSTTNSS 426 (625)
Q Consensus 353 ~-~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~g-v~v~~~~~~~~~~i~~f~~~~~~~~~ 426 (625)
. .+.+.......++++... . +.+.++.+.+++++++.|.+ ++. +....+ .+.++.+.+...
T Consensus 330 t~~~n~~~~~aa~aal~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~----~g~~~~~~~~~~---- 396 (449)
T 2cjg_A 330 TWGGNLTDMVRARRILEVIE--A---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG----RGLMCAFSLPTT---- 396 (449)
T ss_dssp SSSSCHHHHHHHHHHHHHHH--H---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE----ETTEEEEECSSH----
T ss_pred CCCCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee----ccEEEEEEECCh----
Confidence 0 122222222234454432 1 34566777778888887764 344 443322 345555533210
Q ss_pred CccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCH
Q 043646 427 PENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSN 506 (625)
Q Consensus 427 ~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ 506 (625)
....++++.|.+ +||.++++. ++++||++++.+|+
T Consensus 397 -----------~~~~~~~~~l~~-~Gv~v~~~g---------------------------------~~~iRi~~~~~~t~ 431 (449)
T 2cjg_A 397 -----------ADRDELIRQLWQ-RAVIVLPAG---------------------------------ADTVRFRPPLTVST 431 (449)
T ss_dssp -----------HHHHHHHHHHHH-TTEECEEET---------------------------------TTEEEECCCTTCCH
T ss_pred -----------HHHHHHHHHHHH-CCeEEecCC---------------------------------CCEEEEECCCCCCH
Confidence 013568888865 799998541 37899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043646 507 EEFEFILAALEFIAAY 522 (625)
Q Consensus 507 edid~ll~aL~~~~~~ 522 (625)
+|+++++++|++++..
T Consensus 432 e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 432 AEIDAAIAAVRSALPV 447 (449)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=188.92 Aligned_cols=340 Identities=13% Similarity=0.042 Sum_probs=206.5
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+........ +....+...+++++++++++.+.+ .|+|+++|+.+
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~------~~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGseA- 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMF------GGLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSVS- 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCS------SSEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHHH-
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccc------cccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHHH-
Confidence 68887653 45688999999888854311110 111234567899999999987665 89999555555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc-------------CCeEEEEecCC--CCCCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS-------------LAEVVEIGLDD--NGLLD 217 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-------------G~~vv~v~~~~--~~~ld 217 (625)
+..++.++... .+. .-.+|+..+|+..+..|.....+.... ...+..++... .+..|
T Consensus 148 ~~~Alk~a~~~----~~~----~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 219 (457)
T 3tfu_A 148 VEVAAKMALQY----WRG----RGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAY 219 (457)
T ss_dssp HHHHHHHHHHH----HHH----TTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHH
T ss_pred HHHHHHHHHHH----HHh----cCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHH
Confidence 55444433100 000 001455434444555555544333221 12334444432 22358
Q ss_pred HHHHHHHHHHhhhCCCCeEEEEec-ccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCCCCCCCC
Q 043646 218 IEALRSQLELYKAAKRPMLGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRSRNIDGY 289 (625)
Q Consensus 218 ~~~L~~~l~~~~~~~~~~lv~~~~-~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~~~~~~~ 289 (625)
+++|+++|+++ .+++++|+++. ++|++|.+.+ +++|.++|++||+++|+|+++. +|.... .....+. .+
T Consensus 220 ~~~le~~l~~~--~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~-~p 296 (457)
T 3tfu_A 220 SAAFEAQLAQH--AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGV-SP 296 (457)
T ss_dssp HHHHHHHHHHH--GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTC-CC
T ss_pred HHHHHHHHHhC--CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCC-Cc
Confidence 89999999742 24688999999 9999999877 8999999999999999999976 332211 1111111 56
Q ss_pred cEEEEcCCCCCCCCC-CceEEEEeccccccCCC---CC--cccCCceEEeeccccccccccccchhhhhcCCChhHHHHH
Q 043646 290 DAIFLATHKFLGGPG-TPGILLISKALYQLGSS---PP--STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI 363 (625)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~---~p--~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 363 (625)
|++++| |.+++.. .+|++++++++.+ .+ .+ ...+ .+ ..+.+......
T Consensus 297 diit~s--K~l~gG~~~lG~v~~~~~i~~--~~~~~~~~~~~~~-~t----------------------~~~n~~a~aaa 349 (457)
T 3tfu_A 297 DIMCVG--KALTGGYLSLAATLCTADVAH--TISAGAAGALMHG-PT----------------------FMANPLACAVS 349 (457)
T ss_dssp SEEEEC--GGGGTTSSCCEEEEEEHHHHH--HHHHSSSCSCCCC-CT----------------------TTTCHHHHHHH
T ss_pred eEEEEC--hhhhCCCcceEEEEEcHHHHH--HhhccCCCceeEe-cC----------------------CCcCHHHHHHH
Confidence 888655 9998752 5899999988732 11 01 0110 00 01222222233
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
.++++.+ +. +.+.++.+++.+++++.|.++ +++..+.. .+.++.+.+..+ .+.
T Consensus 350 ~aaL~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~----~G~~~~i~l~~~---------------~~~ 405 (457)
T 3tfu_A 350 VASVELL--LG---QDWRTRITELAAGLTAGLDTARALPAVTDVRV----CGAIGVIECDRP---------------VDL 405 (457)
T ss_dssp HHHHHHH--HT---SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEE----CSSCEEEEESSC---------------CCH
T ss_pred HHHHHHH--hh---hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeec----CCeEEEEEECCc---------------ccH
Confidence 3445544 22 234556666777777777653 55543322 234555544321 235
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++.+.|.+ .||.+++. .+++||++++..|++|+++++++|++++
T Consensus 406 ~~~~~~l~~-~Gv~v~~~----------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l 450 (457)
T 3tfu_A 406 AVATPAALD-RGVWLRPF----------------------------------RNLVYAMPPYICTPAEITQITSAMVEVA 450 (457)
T ss_dssp HHHHHHHHH-TTEECCCB----------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEEec----------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 678888876 59998741 2679999999999999999999999998
Q ss_pred Hhh
Q 043646 521 AYG 523 (625)
Q Consensus 521 ~~~ 523 (625)
.+.
T Consensus 451 ~~~ 453 (457)
T 3tfu_A 451 RLV 453 (457)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-18 Score=186.86 Aligned_cols=354 Identities=14% Similarity=0.041 Sum_probs=206.5
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+...... ++ ......+...+++++++++++.+.+ .|+||+ |.+++
T Consensus 52 ~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~-~~----~~~~~~~~~~~la~~l~~~~~~~~~-~v~~~~-gGseA 124 (460)
T 3gju_A 52 KSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYY-HA----YVGHGTEASITLAKMIIDRAPKGMS-RVYFGL-SGSDA 124 (460)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCC-CC----CTTCCCHHHHHHHHHHHHHSCTTEE-EEEEES-SHHHH
T ss_pred EEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc-cc----ccccCCHHHHHHHHHHHhhCCCCcC-EEEEeC-chHHH
Confidence 48886544 456789999998877532100 10 0111234567889999999876665 899985 44554
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEEEecCC-----CCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVEIGLDD-----NGL 215 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~v~~~~-----~~~ 215 (625)
+..++.++... .... -++++..+|+..+..|.....+....| ..+..++... +..
T Consensus 125 ~~~al~~~~~~-------~~~~-g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 196 (460)
T 3gju_A 125 NETNIKLIWYY-------NNVL-GRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRS 196 (460)
T ss_dssp HHHHHHHHHHH-------HHHT-TCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTT
T ss_pred HHHHHHHHHHH-------HHhc-CCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccc
Confidence 55554443100 0000 013333244445555555544443322 2455666432 111
Q ss_pred CC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--cc
Q 043646 216 LD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--IN 280 (625)
Q Consensus 216 ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id 280 (625)
++ +++|++++++. ..+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++ +|... ..
T Consensus 197 ~~~~~~~~~~~~~le~~i~~~-~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~ 275 (460)
T 3gju_A 197 MSEEQFSQHCADKLEEMILAE-GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFG 275 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH
T ss_pred cChhHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccch
Confidence 23 68899888741 1135789999998999998776 9999999999999999999987 43221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCC-------CcccCCceEEeeccccccccccccchhhhh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSP-------PSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~-------p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~ 352 (625)
....+. .+|++++| |.+++. ..+|++++++++.. .+. +...+ .+
T Consensus 276 ~~~~~~-~pdi~t~s--K~l~gG~~~lg~v~~~~~i~~--~~~~~~~~~~~~~~~-~t---------------------- 327 (460)
T 3gju_A 276 SDHYGI-KPDLITIA--KGLTSAYAPLSGVIVADRVWQ--VLVQGSDKLGSLGHG-WT---------------------- 327 (460)
T ss_dssp HHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHHHHH--HHHHHHHHHCSCSCC-CT----------------------
T ss_pred HhhcCC-CCCeeeee--hhhcCCCCCeEEEEECHHHHH--HHhcccccccccccC-CC----------------------
Confidence 111111 56888765 999864 35799999988732 210 00000 00
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 353 ~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
..+.+.......++++... +..-.+.+.+....+.+.+.+.+.+.+.+..+.+ .+.++.+.+..+..
T Consensus 328 ~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~~~~~-------- 394 (460)
T 3gju_A 328 YSAHPICVAAGVANLELID-EMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG----DGMLAAVEFVADKD-------- 394 (460)
T ss_dssp TTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE----ETTEEEEEECSBTT--------
T ss_pred CCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee----eeEEEEEEEccCcc--------
Confidence 0122222222234444431 1111445555555566666677777776655433 34555555543210
Q ss_pred cCCCCC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 433 ERNKPL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 433 ~~~~~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
....+ ....+.+.|.+ +||.++++. .++++||++++..|++
T Consensus 395 -~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~--------------------------------~~~~iRi~~~~~~t~e 440 (460)
T 3gju_A 395 -DRVFFDASQKIGPQVATALAA-SGVIGRAMP--------------------------------QGDILGFAPPLCLTRE 440 (460)
T ss_dssp -TTBCCCGGGCHHHHHHHHHHH-TTEECEECS--------------------------------SSCEEEECCCTTCCHH
T ss_pred -ccccccchHHHHHHHHHHHHH-CCeEEecCC--------------------------------CCCEEEEECCCCCCHH
Confidence 00011 13467777765 699998642 1378999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 043646 508 EFEFILAALEFIAAYG 523 (625)
Q Consensus 508 did~ll~aL~~~~~~~ 523 (625)
|+++++++|++++.+.
T Consensus 441 ~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 441 QADIVVSKTADAVKSV 456 (460)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-18 Score=187.44 Aligned_cols=348 Identities=11% Similarity=0.010 Sum_probs=202.5
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.|.+++.+.+... .+... .+ ......+++++++++++.+.+ +|+|| +|+++
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~e 113 (433)
T 1zod_A 43 RAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL-DHLFS-EM-----LSRPVVDLATRLANITPPGLD-RALLL-STGAE 113 (433)
T ss_dssp CEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCT-TC-----CCHHHHHHHHHHHHHSCTTCC-EEEEE-SCHHH
T ss_pred CEEEEcccchhccccCCCCHHHHHHHHHHHHhC-ccccc-cc-----CCHHHHHHHHHHHHhCCCCcC-EEEEe-CchHH
Confidence 358887433 334789999998887542 11111 11 124566788899999998665 89998 55666
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-----------CeEEEEecCCC-------
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-----------AEVVEIGLDDN------- 213 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-----------~~vv~v~~~~~------- 213 (625)
++..++.++. ....+++ +|+..+.+|.+........+ ..++.++.+..
T Consensus 114 a~~~a~~~~~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (433)
T 1zod_A 114 SNEAAIRMAK-------------LVTGKYE-IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFER 179 (433)
T ss_dssp HHHHHHHHHH-------------HHHTCCE-EEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEE
T ss_pred HHHHHHHHHH-------------HhhCCCe-EEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCC
Confidence 6666665431 0112343 34444455555543333211 24555554321
Q ss_pred -----CCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cC
Q 043646 214 -----GLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NL 281 (625)
Q Consensus 214 -----~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~ 281 (625)
+.+|+++|++++++. ..+++++|+++.++|+||.+.+ +++|.++|++||+++|+|++++ ++.... .+
T Consensus 180 ~~~~~~~~d~~~le~~l~~~-~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~ 258 (433)
T 1zod_A 180 NGAYDYLAELDYAFDLIDRQ-SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFAC 258 (433)
T ss_dssp TTEECHHHHHHHHHHHHHHH-CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTH
T ss_pred chhhhHHHHHHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHH
Confidence 124699999999742 1135778887777788998776 9999999999999999999988 442211 11
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 282 RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
...+ ..+|++++ .|+|+++..+|++++++++.. .+.+.... .....+.+++..
T Consensus 259 ~~~~-~~~di~s~--sK~~~~G~~ig~~~~~~~~~~--~~~~~~~~----------------------~~~t~~~~~~~~ 311 (433)
T 1zod_A 259 QRDG-VTPDILTL--SKTLGAGLPLAAIVTSAAIEE--RAHELGYL----------------------FYTTHVSDPLPA 311 (433)
T ss_dssp HHHT-CCCSEEEE--CHHHHTTSSCEEEEECHHHHH--HHHHTTCC----------------------CCCTTTTCHHHH
T ss_pred hhcC-CCCCEEEe--cccccCCCCeeEEEEhHHHHH--hhccCCCC----------------------CCCCCCcCHHHH
Confidence 1111 14677654 599986556899999987732 11110000 000011122222
Q ss_pred -HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 362 -MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 362 -~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
...++++.+. .. .+.++.+++++++++.|.+ ++.+....+ .+.++.+.+....... ...
T Consensus 312 ~a~~aal~~~~--~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~----~g~~~~i~~~~~~~~~-------~~~ 375 (433)
T 1zod_A 312 AVGLRVLDVVQ--RD---GLVARANVMGDRLRRGLLDLMERFDCIGDVRG----RGLLLGVEIVKDRRTK-------EPA 375 (433)
T ss_dssp HHHHHHHHHHH--HT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEEEETTTT-------EEC
T ss_pred HHHHHHHHHHH--hC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEecCcccc-------CCC
Confidence 2234454432 22 2455666667777776654 354443322 2345554443210000 000
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
......+.+.|.+ +||.+++|..+. .++++||++++.++++|+++++++|
T Consensus 376 ~~~~~~~~~~l~~-~Gv~v~~~~~~~-----------------------------~~~~lRi~~~~~~t~~~i~~~l~~l 425 (433)
T 1zod_A 376 DGLGAKITRECMN-LGLSMNIVQLPG-----------------------------MGGVFRIAPPLTVSEDEIDLGLSLL 425 (433)
T ss_dssp TTHHHHHHHHHHH-TTEECCEECCTT-----------------------------SCCEEEECCCTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-CCCeEeccCCCC-----------------------------CCCEEEEECCcCCCHHHHHHHHHHH
Confidence 1124568888864 799998764321 1388999999999999999999999
Q ss_pred HHHHHh
Q 043646 517 EFIAAY 522 (625)
Q Consensus 517 ~~~~~~ 522 (625)
++++.+
T Consensus 426 ~~~l~~ 431 (433)
T 1zod_A 426 GQAIER 431 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.9e-18 Score=185.45 Aligned_cols=347 Identities=14% Similarity=0.059 Sum_probs=197.5
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |..++.|.+++.+++.... +.. ......+...+++++++++++....+.|+||++|+.+
T Consensus 61 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~---~~~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 134 (451)
T 3oks_A 61 NRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFT---HTC---FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEA 134 (451)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCS---CCT---TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHH
T ss_pred CEEEEcCCCccccccCCCCHHHHHHHHHHHHhcc---ccc---CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHH
Confidence 458887654 3458899999999886431 110 1111234567788999999976533489999655555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCC-----
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDN----- 213 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~----- 213 (625)
+..++.+.. ..+|+..+|+.....|.....+....| ..+..++....
T Consensus 135 -~~~Alk~a~--------------~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T 3oks_A 135 -VENAVKIAR--------------SHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAE 199 (451)
T ss_dssp -HHHHHHHHH--------------HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGG
T ss_pred -HHHHHHHHH--------------HhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 444443321 012333234444555544443333222 15667766421
Q ss_pred -C-------CCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--
Q 043646 214 -G-------LLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK-- 278 (625)
Q Consensus 214 -~-------~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~-- 278 (625)
| ..+++.+++.+.+....+++++|+++.+++..|.+.+ +++|.++|++||+++|+|++++ ++...
T Consensus 200 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 200 FGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp GCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 0 1134555566653212235678888777777788877 9999999999999999999987 32221
Q ss_pred ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 279 INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
......+. .+|++++| |.+++...+|++++++++ .+.+.+...++ + ..+.+.
T Consensus 280 ~~~~~~~~-~pdi~t~s--K~l~~G~~iG~v~~~~~~--~~~~~~~~~~~-t----------------------~~~~~~ 331 (451)
T 3oks_A 280 FACEHEGI-DPDLIVTA--KGIAGGLPLSAVTGRAEI--MDSPHVSGLGG-T----------------------YGGNPI 331 (451)
T ss_dssp SGGGGGTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTCSCTTSBCC-S----------------------SSSCHH
T ss_pred hhhhhcCC-CCCeeeeh--hhhhCCcceEEEEECHHH--HhhhcCCCcCC-C----------------------CCCCHH
Confidence 11111111 46877665 999764558999999887 33443322111 0 012222
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh----CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI----LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L----~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
......++++.+ +.. .+.++.+++.+++++.| ...+.+..+.+ .+.++.+........ .
T Consensus 332 ~~aaa~aal~~~--~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~~--------~ 394 (451)
T 3oks_A 332 ACAAALATIETI--ESE---GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRG----RGAMIAMELVKAGTT--------E 394 (451)
T ss_dssp HHHHHHHHHHHH--HHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEBSTTSC--------C
T ss_pred HHHHHHHHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE----eeEEEEEEEecCccC--------C
Confidence 222223444443 111 33344444444444444 44565544332 345555555321000 0
Q ss_pred CCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 043646 435 NKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILA 514 (625)
Q Consensus 435 ~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~ 514 (625)
........+.+.|.+ +||.++++..+ .+++||++++.+|++|++++++
T Consensus 395 ~~~~~~~~~~~~l~~-~Gv~v~~~~~~-------------------------------~~~iRi~~~~~~t~e~i~~~l~ 442 (451)
T 3oks_A 395 PDADLTKALCAGAHA-AGVIVLSCGTY-------------------------------GNVVRFLPPLSIGDDLLNEGLD 442 (451)
T ss_dssp BCHHHHHHHHHHHHH-TTEECEEECTT-------------------------------SCEEEECCCTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-CCcEEecCCCC-------------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 001123467777765 69999865321 3789999999999999999999
Q ss_pred HHHHHHHh
Q 043646 515 ALEFIAAY 522 (625)
Q Consensus 515 aL~~~~~~ 522 (625)
+|++++.+
T Consensus 443 ~l~~~l~~ 450 (451)
T 3oks_A 443 VLEEVLRG 450 (451)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988754
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-17 Score=181.99 Aligned_cols=359 Identities=11% Similarity=0.024 Sum_probs=198.6
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..| .-|+|..+ .|..++.|.+++.+.+......... ....+...+++++++++++.+.+
T Consensus 35 G~~v~d~~g---~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~ 105 (448)
T 3dod_A 35 GIKVKDING---KEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL------GMTNVPATQLAETLIDISPKKLT 105 (448)
T ss_dssp BTEEEETTS---CEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS------SSEEHHHHHHHHHHHHHSCTTEE
T ss_pred eCEEEECCC---CEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCC
Confidence 344444444 34888765 3456889999999988643111111 11234567788999999976555
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCC----CceEEEEcCCCCchhH-HHHHHcC------------
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDE----ERWVVFLGPYEHHSNL-LSWRQSL------------ 202 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g----d~~~Vlv~~~~h~s~~-~~~~~~G------------ 202 (625)
.|+||++|+.+ +..++.++... ...+| ++ |++....|+... ......|
T Consensus 106 -~v~~~~sGseA-~~~al~~~~~~-----------~~~~G~~~~~~--vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 170 (448)
T 3dod_A 106 -RVFYSDSGAEA-MEIALKMAFQY-----------WKNIGKPEKQK--FIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM 170 (448)
T ss_dssp -EEEEESSHHHH-HHHHHHHHHHH-----------HHHTTCTTCCE--EEEEC---------------------------
T ss_pred -EEEEeCchHHH-HHHHHHHHHHH-----------HHhhCCCCCCE--EEEECCCCCCccHHHHHhcCCccccccccCCC
Confidence 89999555555 44444433100 00133 43 655555554433 2222222
Q ss_pred CeEEEEecCCCCCC-----------CHHHHHHHHHHhhhCCCCeEEEEeccc-CccccccC----HHHHHHHHHHcCCEE
Q 043646 203 AEVVEIGLDDNGLL-----------DIEALRSQLELYKAAKRPMLGSFSACS-NVTGIYSD----TRSIARLLHQYGGFA 266 (625)
Q Consensus 203 ~~vv~v~~~~~~~l-----------d~~~L~~~l~~~~~~~~~~lv~~~~~~-n~TG~~~~----l~~I~~la~~~g~~v 266 (625)
..+..++.+..... |+++|+++++.. .+++++|+++.++ |++|.+.+ +++|.++|++||+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l 248 (448)
T 3dod_A 171 FESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH--HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLM 248 (448)
T ss_dssp --CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEE
T ss_pred CCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC--CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEE
Confidence 12344554332222 488999998731 2467888888888 99998877 999999999999999
Q ss_pred EEeccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeecccccccc
Q 043646 267 CFDFAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 267 ivD~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
|+|++++ ++... ......+. .+|++++| |.+++. ..+|++++++++. +.+.+........
T Consensus 249 I~DEv~~g~g~~g~~~a~~~~~~-~~di~t~s--K~l~~G~~~ig~v~~~~~~~--~~~~~~~~~~~~~----------- 312 (448)
T 3dod_A 249 IVDEVATGFGRTGKMFACEHENV-QPDLMAAG--KGITGGYLPIAVTFATEDIY--KAFYDDYENLKTF----------- 312 (448)
T ss_dssp EEECTTTTTTTTSSSSGGGGGTC-CCSEEEEC--GGGGTTSSCCEEEEEEHHHH--HTTCSCGGGCCCC-----------
T ss_pred EEeccccCCCcccchhhhhhcCC-CCCEEEec--ccccCCcCceEEEEECHHHH--HHhhhccccCCcc-----------
Confidence 9999977 33221 11111111 46877765 999765 2679999999883 3332210000000
Q ss_pred ccccchhhhhc-CCChhHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEec
Q 043646 343 LYLEDIEEREN-GGTPQIVQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVY 420 (625)
Q Consensus 343 ~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~ 420 (625)
..... .+++.......++++.+ +... .+.+.+....+.+.+.+ +..++.+....+ .+.++.+...
T Consensus 313 ------~~~~t~~~~~~~~aaa~aal~~~--~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~----~g~~~~~~~~ 379 (448)
T 3dod_A 313 ------FHGHSYTGNQLGCAVALENLALF--ESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQ----LGFMCGAELV 379 (448)
T ss_dssp ------CCCCTTTTCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEE----ETTEEEEEEC
T ss_pred ------cccCCCCcCHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEe----eeEEEEEEEc
Confidence 00000 12222222233444443 2222 33444444444555555 555665543322 2345555443
Q ss_pred cCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcE
Q 043646 421 STTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGW 495 (625)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~ 495 (625)
.+... ..... ...+++.|.+ .||.++++ .++
T Consensus 380 ~~~~~---------~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~----------------------------------~~~ 415 (448)
T 3dod_A 380 RSKET---------KEPYPADRRIGYKVSLKMRE-LGMLTRPL----------------------------------GDV 415 (448)
T ss_dssp SBTTT---------TBCCCGGGCHHHHHHHHHHH-TTEECCEE----------------------------------TTE
T ss_pred cCccc---------ccccchhhHHHHHHHHHHHH-CCcEEecc----------------------------------CCE
Confidence 32100 00010 2467788866 69998753 167
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 496 TRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 496 iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
+||++++.+|++|+++++++|++++.+.
T Consensus 416 iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 416 IAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=195.70 Aligned_cols=312 Identities=14% Similarity=0.077 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
....++++.+|+++|++. .++++ +|+++++..++.++ +++||. |+++...|.|+..+++.
T Consensus 195 g~i~eaE~~lA~~fGa~~--a~~v~-nGts~An~~ai~al---------------~~pGD~--VLv~r~~H~S~~~~l~l 254 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR--SYMVT-NGTSTANKIVGMYS---------------APAGST--ILIDRNCHKSLTHLMMM 254 (715)
T ss_dssp THHHHHHHHHHHHHTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC--ceEEC-cHHHHHHHHHHHHh---------------CCCCCE--EEECCCccHHHHHHHHH
Confidence 357889999999999963 34554 89888787777776 589996 99999999999999999
Q ss_pred cCCeEEEEecCCC-C----CC-----CHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 201 SLAEVVEIGLDDN-G----LL-----DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 201 ~G~~vv~v~~~~~-~----~l-----d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
.|+++++++.+.+ . .+ |+++|+++++++....++++++++++ |++|.+.|+++|+++|++++ +++|+
T Consensus 255 sGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDE 331 (715)
T 3n75_A 255 SDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp SCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEEC
T ss_pred cCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcc
Confidence 9999999987542 1 24 89999999985311112458999999 99999999999999998763 79999
Q ss_pred cCcCCCc--cc--cCCCCCC-CCCcEE---EEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeecccccccc
Q 043646 271 AASGPYV--KI--NLRSRNI-DGYDAI---FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342 (625)
Q Consensus 271 A~~~g~~--~i--d~~~~~~-~~~D~v---~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (625)
||+.+.. +. +...+.. .++|++ +.|+||+++++.+.|++++++.... ..
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~-~~---------------------- 388 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNE-ET---------------------- 388 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCH-HH----------------------
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhH-HH----------------------
Confidence 9987642 21 1122211 126766 8999999999877799999876310 00
Q ss_pred ccccchhhhhcCCChhHHHHH--HHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHhhCCCCc------EEEeCCCCCCCcc
Q 043646 343 LYLEDIEERENGGTPQIVQMI--RAALAFWVKEY-IGYEVIKKQEDVYIESALGRILPNQN------IQVLGNTSVKRQA 413 (625)
Q Consensus 343 ~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~-~g~~~i~~~~~~l~~~l~~~L~~l~g------v~v~~~~~~~~~~ 413 (625)
.......+..++|+...++ .++++++ +. .| +.+.++...+++++++.|.++++ ++++.+.......
T Consensus 389 --~~~~~~~~~STSpsy~~~AsldaA~~~~--~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~ 463 (715)
T 3n75_A 389 --FNEAYMMHTTTSPHYGIVASTETAAAMM--KGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTE 463 (715)
T ss_dssp --HHHHHHHTSCSSCCHHHHHHHHHHHHHH--SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCS
T ss_pred --HHHHHHhhcCCCchHHHHHHHHHHHHHH--Hhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchh
Confidence 0000122334556665543 3444443 21 23 34667888889999999987754 5776653211111
Q ss_pred eE--------------------------EEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 414 IL--------------------------SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 414 i~--------------------------~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
.+ ++.+ ++.+ ..+.-...++.+..+.+.|. ++||++--.
T Consensus 464 ~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~-~~~~----~~G~~~~~Gi~g~~~~~~L~-~~~I~~E~~--------- 528 (715)
T 3n75_A 464 CWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLT-PGME----KDGTMSDFGIPASIVAKYLD-EHGIVVEKT--------- 528 (715)
T ss_dssp CEECCTTCCTTCCTTCCSSSEEECTTEEEEEC-SCBC----TTSCBCSSCCCHHHHHHHHH-HTTCCCSEE---------
T ss_pred hhccCcccccccccccccCcccCCCeEEEEEc-CCCC----CCCccccCCCcHHHHHHHHH-HCCCEEEec---------
Confidence 11 1111 0000 00000113677888999884 579987521
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
....+=+-++...|++++++++++|.++.+.
T Consensus 529 ------------------------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 529 ------------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp ------------------------ETTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1255666667778999999999999988654
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-18 Score=183.64 Aligned_cols=347 Identities=15% Similarity=0.080 Sum_probs=192.8
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |..++.|.+++.+++.... +.. ......+...+++++++++++.+..++|+||++|+.+
T Consensus 64 ~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~---~~~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA 137 (453)
T 4ffc_A 64 NSFIDLGAGIAVTTVGASHPAVAAAIADQATHFT---HTC---FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEA 137 (453)
T ss_dssp CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS---CCT---TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred CEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcc---ccc---cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHH
Confidence 358887654 3458899999988875431 110 1112245567889999999986533489999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeEEEEecCCC----C
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEVVEIGLDDN----G 214 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~----~ 214 (625)
+..++.+.. ..+|+..+|+.....|.....+....+ ..+..++.... .
T Consensus 138 -~~~alk~a~--------------~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (453)
T 4ffc_A 138 -VENAIKVAR--------------LATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEP 202 (453)
T ss_dssp -HHHHHHHHH--------------HHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCT
T ss_pred -HHHHHHHHH--------------HhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcc
Confidence 444443321 012332244445555554443333322 14666766421 1
Q ss_pred CCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--
Q 043646 215 LLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI-- 279 (625)
Q Consensus 215 ~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i-- 279 (625)
.++ ++.|++++.. +.+.+|+++.+++..|.+.+ +++|.++|++||+++|+|++++ ++....
T Consensus 203 g~~~~~~~~~~~~~l~~~i~~----~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~ 278 (453)
T 4ffc_A 203 GLTGEEAARRAISRIETQIGA----QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF 278 (453)
T ss_dssp TCCHHHHHHHHHHHHHHHTCG----GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred ccchHHHHHHHHHHHHHhcCC----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc
Confidence 122 2333333321 34567777666666677766 9999999999999999999976 322211
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
.....+. .+|++++| |.+++...+|++++++++ .+.+.+...++ + ..+.+..
T Consensus 279 a~~~~~~-~pdi~t~s--K~~~~G~~~G~~~~~~~i--~~~~~~~~~~~-t----------------------~~~~~~~ 330 (453)
T 4ffc_A 279 ASEHEGI-VPDIVTMA--KGIAGGMPLSAVTGRAEL--MDAVYAGGLGG-T----------------------YGGNPVT 330 (453)
T ss_dssp THHHHTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSCTTSSCC-S----------------------SSSCHHH
T ss_pred hhhhcCC-CcchHhhh--hhhcCCcCeEEEEECHHH--HhhhcccCcCC-C----------------------CCcCHHH
Confidence 0111111 46777765 999764468999999887 33443322111 1 0122222
Q ss_pred HHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 360 VQMIRAALAFWVKEYIG-YEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g-~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
.....++++.. +... .+.+.+....+.+.+.+.+..++.+..+.+ .+.++.+.+...... .....
T Consensus 331 ~aaa~aal~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~--------~~~~~ 396 (453)
T 4ffc_A 331 CAAAVAALGVM--RELDLPARARAIEASVTSRLSALAEEVDIIGEVRG----RGAMLAIEIVKPGTL--------EPDAA 396 (453)
T ss_dssp HHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEE----ETTEEEEEEBCTTSC--------CBCHH
T ss_pred HHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe----eceEEEEEEecCccc--------CCCHH
Confidence 22223444443 1212 223333333334444444444565554332 235555554321100 00001
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
....+.+.|.+ +||.++++..+ ++++||++++.++++|+++++++|++
T Consensus 397 ~~~~~~~~l~~-~Gv~v~~~~~~-------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 397 LTKSIAAEALS-QGVLILTCGTF-------------------------------GNVIRLLPPLVIGDDLLDEGITALSD 444 (453)
T ss_dssp HHHHHHHHHHH-TTEECCEECTT-------------------------------SCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCEEecCCCC-------------------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 23467777765 69999865321 37899999999999999999999999
Q ss_pred HHHhh
Q 043646 519 IAAYG 523 (625)
Q Consensus 519 ~~~~~ 523 (625)
++.+.
T Consensus 445 ~l~~~ 449 (453)
T 4ffc_A 445 IIRAK 449 (453)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-18 Score=184.97 Aligned_cols=362 Identities=13% Similarity=0.050 Sum_probs=207.7
Q ss_pred CccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
+..+.+..| .-|+|..++ |..++.|.+++.+.+.... ..+. .....+...+++++++++++.+.
T Consensus 41 G~~~~d~~g---~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 41 GVYLWDSEG---NKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF------FKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp BTEEEETTC---CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT------SSSCCHHHHHHHHHHHHHSCTTC
T ss_pred cCEEEECCC---CEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHHhCCCCC
Confidence 344444444 348887654 4457899999988885421 1111 11124556788999999998766
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEE
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVV 206 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv 206 (625)
+ .|+|+++| ++++..++.++... ... .-++++..+|+..+..|.....+....| ..+.
T Consensus 112 ~-~v~~~~gg-seA~~~al~~~~~~-------~~~-~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (459)
T 4a6r_A 112 D-RVFYTNSG-SESVDTMIRMVRRY-------WDV-QGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMA 181 (459)
T ss_dssp C-EEEEESSH-HHHHHHHHHHHHHH-------HHH-TTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEE
T ss_pred C-EEEEeCch-HHHHHHHHHHHHHH-------HHh-cCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCE
Confidence 6 89998544 44455554443100 000 0013333244445555554443333222 1344
Q ss_pred EEecCC-----CCCCC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDD-----NGLLD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~-----~~~ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.++... +. +| +++|++++++. ..+++++|+++.+++++|.+.+ +++|.++|++||+++|+|
T Consensus 182 ~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~-~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D 259 (459)
T 4a6r_A 182 HIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI-GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVAD 259 (459)
T ss_dssp EECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc-CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 555322 11 35 78899888741 1135678888888888898887 999999999999999999
Q ss_pred ccCc-CCCcc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 270 FAAS-GPYVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 270 ~A~~-~g~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
++++ ++... ......+. .+|++++| |.+++. ..+|++++++++.+ .+...
T Consensus 260 Ev~~g~gr~G~~~~~~~~~~-~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~--~~~~~--------------------- 313 (459)
T 4a6r_A 260 EVICGFGRTGEWFGHQHFGF-QPDLFTAA--KGLSSGYLPIGAVFVGKRVAE--GLIAG--------------------- 313 (459)
T ss_dssp CTTTTTTTTSSSSHHHHHTC-CCSEEEEC--GGGGTTSSCCEEEEECHHHHH--HHHHH---------------------
T ss_pred ccccCCCcccccchHhhcCC-CCCeeehh--hhhcCCCCCccceeeCHHHHH--HhhcC---------------------
Confidence 9976 33221 11111111 56888776 998765 36899999988732 11100
Q ss_pred cchhhhhc-CCChhHHHHHHHHHHHHHHhhcC-HHHHH-HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccC
Q 043646 346 EDIEEREN-GGTPQIVQMIRAALAFWVKEYIG-YEVIK-KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 346 ~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g-~~~i~-~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~ 422 (625)
........ .+.+.......++++.. +... .+.+. +....+.+.+.+.|.+++.+..+.+ .+.++.+.+..+
T Consensus 314 ~~~~~~~t~~~~~~~~aaa~aal~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~~~ 387 (459)
T 4a6r_A 314 GDFNHGFTYSGHPVCAAVAHANVAAL--RDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRG----VGMVQAFTLVKN 387 (459)
T ss_dssp CTTHHHHHHCSCHHHHHHHHHHHHHH--HHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEECSB
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE----EEEEEEEEEecC
Confidence 00001111 12222222223444443 2222 33444 4444555555566666776665543 345555554332
Q ss_pred CCCCCccccccCCCCC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEE
Q 043646 423 TNSSPENMKIERNKPL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTR 497 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iR 497 (625)
.. ....+ ....+++.|.+ .||.++++ .+++|
T Consensus 388 ~~---------~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iR 423 (459)
T 4a6r_A 388 KA---------KRELFPDFGEIGTLCRDIFFR-NNLIMRAC----------------------------------GDHIV 423 (459)
T ss_dssp TT---------TTBCCSSTTHHHHHHHHHHHH-TTEECEEE----------------------------------TTEEE
T ss_pred cc---------ccccccchHHHHHHHHHHHHH-CCeEEecC----------------------------------CCEEE
Confidence 10 00011 13467777766 69999853 16799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 498 ITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 498 is~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
|++++..|++|+++++++|++++.+..
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 424 SAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=190.02 Aligned_cols=192 Identities=14% Similarity=0.032 Sum_probs=143.7
Q ss_pred HHHHHHHHHhhCC--CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccccc
Q 043646 91 RYIEDYIINNVLP--FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF--CGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 91 ~~v~ea~~~~l~~--~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~ 166 (625)
+.|++++.+.... .+.+ . ..|.+++. -.+++++.+++++|++. .+++ +++|+. ++..++.++
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~-~-~gy~Y~~~---g~~~Le~~lA~l~g~e~--alv~p~~~sGt~-A~~~al~al------ 112 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTN-S-SGYGYNDI---GRDSLDRVYANIFNTES--AFVRPHFVNGTH-AIGAALFGN------ 112 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCC-C-CTTCTTCH---HHHHHHHHHHHHHTCSE--EEEETTCCSHHH-HHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhccc-C-cCCCCCch---hHHHHHHHHHHHhCCCc--eEEeCCCCcHHH-HHHHHHHHh------
Confidence 5788888775432 1222 2 22333332 26778899999999864 3553 546765 566666665
Q ss_pred hhhhhhhhccCCCCceEEEEcC-CCCchhHH-----------HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 167 IMRDKLITSLRDEERWVVFLGP-YEHHSNLL-----------SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~-----------~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
++|||+ |+++. ..|..... .++..|++++.++. +++.+|+++|++++++. ++|
T Consensus 113 ---------l~pGD~--Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~---~~t 177 (427)
T 3hvy_A 113 ---------LRPNDT--MMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKD---DSI 177 (427)
T ss_dssp ---------CCTTCE--EEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC---TTE
T ss_pred ---------cCCCCE--EEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC---CCC
Confidence 689996 88887 77776542 23457999999998 67889999999999841 379
Q ss_pred eEEEEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCC---CCC
Q 043646 235 MLGSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGG---PGT 305 (625)
Q Consensus 235 ~lv~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g 305 (625)
++|++++ ++||||.+.|+++|+++|++ +|+++++|++++.+......... ++|+++.|+||++|+ |.|
T Consensus 178 klV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~---gaDiv~~S~sK~lgg~g~~~G 254 (427)
T 3hvy_A 178 KLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDV---GADIIAGSLIKNIGGGIATTG 254 (427)
T ss_dssp EEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGG---TCSEEEEETTSGGGTTTCCSC
T ss_pred EEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCccc---CCeEEEECCcccccccccceE
Confidence 9999999 99999999999999999999 89999999999877632222223 789999999999987 454
Q ss_pred ceEEEEeccc
Q 043646 306 PGILLISKAL 315 (625)
Q Consensus 306 ~G~l~v~~~~ 315 (625)
|+++.++++
T Consensus 255 -G~i~~~~~l 263 (427)
T 3hvy_A 255 -GYIAGKEEY 263 (427)
T ss_dssp -EEEEECHHH
T ss_pred -EEEEECHHH
Confidence 999998877
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=188.78 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=145.5
Q ss_pred HHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccccch
Q 043646 91 RYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF--CGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 91 ~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~ 167 (625)
..|++++.+... ....++.+ .+.++... .+++++.+++++|++. .+++ +++|+. ++..++.++
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~-~~~y~~~~---~~~Le~~lA~l~g~e~--alv~p~~~sGt~-Ai~~al~al------- 97 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPST-GYGYDDEG---RDTLERVYATVFKTEA--ALVRPQIISGTH-AISTVLFGI------- 97 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCC-TTCTTCHH---HHHHHHHHHHHHTCSE--EEEETTSCSHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhccCCCc-CCCCChhH---HHHHHHHHHHHhCCCc--EEEECCCccHHH-HHHHHHHHh-------
Confidence 467788877652 22223332 23333332 6778899999999863 3553 556655 466666655
Q ss_pred hhhhhhhccCCCCceEEEEcC-CCCchhHHH----------HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeE
Q 043646 168 MRDKLITSLRDEERWVVFLGP-YEHHSNLLS----------WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~----------~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
+++||+ |+++. ..|...... ++..|++++.+++++++.+|+++|+++++ ++|++
T Consensus 98 --------l~~GD~--Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~-----~~tkl 162 (409)
T 3jzl_A 98 --------LRPDDE--LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT-----PKTKM 162 (409)
T ss_dssp --------CCTTCE--EEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC-----TTEEE
T ss_pred --------cCCCCE--EEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc-----CCCeE
Confidence 578985 88887 778777643 34569999999998889999999999997 58999
Q ss_pred EEEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceE
Q 043646 237 GSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGI 308 (625)
Q Consensus 237 v~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~ 308 (625)
|++++ ++|+||.+.|+++|+++||+ +|+++++|++++.+....+.... ++|+++.|+||++|++.. .|+
T Consensus 163 V~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~---g~Div~~S~sK~lgg~~~~~GG~ 239 (409)
T 3jzl_A 163 IGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEV---GADIIAGSLIKNPGGGLAKTGGY 239 (409)
T ss_dssp EEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGG---TCSEEEEETTSGGGTTTCSSCEE
T ss_pred EEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCcccc---CCeEEEECccccCCccCCceEEE
Confidence 99999 99999999999999999999 99999999998877633222233 789999999999987532 389
Q ss_pred EEEeccc
Q 043646 309 LLISKAL 315 (625)
Q Consensus 309 l~v~~~~ 315 (625)
++.++++
T Consensus 240 v~~~~~l 246 (409)
T 3jzl_A 240 IAGKEAL 246 (409)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9988877
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=186.05 Aligned_cols=195 Identities=14% Similarity=0.025 Sum_probs=145.9
Q ss_pred HHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccccch
Q 043646 91 RYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIF--CGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 91 ~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~ 167 (625)
+.|++++.+... ....++.. .|.+++.. .+++++.+++++|++.. +++ +++|+. ++..++.++
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~-gy~y~~~~---~~~Le~~lA~l~g~e~a--lv~p~~~sGt~-Ai~~al~al------- 111 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSS-GYGYGDIG---RDSLDAVYARVFNTESA--LVRPHFVNGTH-ALGAALFGN------- 111 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCTTCHH---HHHHHHHHHHHHTCSEE--EEETTCCSHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHhchhHHhcCCCC-CCCCCHHH---HHHHHHHHHHHhCCcce--EEeCCCccHHH-HHHHHHHHH-------
Confidence 468888876542 22222222 23333332 67788999999998643 563 557765 566666665
Q ss_pred hhhhhhhccCCCCceEEEEcC-CCCchhHHH-----------HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 168 MRDKLITSLRDEERWVVFLGP-YEHHSNLLS-----------WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~-----------~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
++|||+ |+++. ..|...... ++..|++++.+++++++.+|+++|++++++. ++|+
T Consensus 112 --------l~pGD~--Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~---~~tk 178 (427)
T 3i16_A 112 --------LRPGNT--MLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED---ESIT 178 (427)
T ss_dssp --------CCTTCE--EEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC---TTEE
T ss_pred --------hCCCCE--EEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC---CCCE
Confidence 578985 88887 777766532 3456999999999888899999999999731 3799
Q ss_pred EEEEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCC---CCCc
Q 043646 236 LGSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGG---PGTP 306 (625)
Q Consensus 236 lv~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~ 306 (625)
+|++++ ++||||.+.|+++|+++||+ +|+++++|++++.+......... ++|+++.|+||++|+ |.|
T Consensus 179 lV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~---gaDiv~~S~sK~lgg~g~~~g- 254 (427)
T 3i16_A 179 LVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDV---GADLIAGSLIKNIGGGIAPTG- 254 (427)
T ss_dssp EEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGG---TCSEEEEETTSGGGTTTCCSC-
T ss_pred EEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCcccc---CCeEEEecCcccCCCCCCceE-
Confidence 999999 99999999999999999999 99999999999877633222233 789999999999987 444
Q ss_pred eEEEEecccc
Q 043646 307 GILLISKALY 316 (625)
Q Consensus 307 G~l~v~~~~~ 316 (625)
|+++.++++.
T Consensus 255 G~i~~~~~li 264 (427)
T 3i16_A 255 GYLAGTKDCI 264 (427)
T ss_dssp EEEEECHHHH
T ss_pred EEEEECHHHH
Confidence 9999998873
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-17 Score=181.91 Aligned_cols=349 Identities=13% Similarity=0.034 Sum_probs=203.0
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
.-|+|..+ .|..++.|.+++.+++.... ..+.. ....+...+++++++++++.+.+ .|+|+++|+.
T Consensus 55 ~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~------~~~~~~~~~lae~l~~~~~~~~~-~v~~~~sGse 127 (472)
T 3hmu_A 55 EEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF------KTTHVPAIALAQKLAELAPGDLN-HVFFAGGGSE 127 (472)
T ss_dssp CEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS------SEECHHHHHHHHHHHHHSCTTEE-EEEEESSHHH
T ss_pred CEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc------ccCCHHHHHHHHHHHHhCCCCCC-EEEEeCCHHH
Confidence 35888765 34568899999998885432 11111 11234567788999999876555 8999865655
Q ss_pred HHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------eEEEEecCC----CCC
Q 043646 151 AAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-----------EVVEIGLDD----NGL 215 (625)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv~v~~~~----~~~ 215 (625)
+ +..++.+.... .... -.++...+|+..+..|.....+....|. .++.++... +..
T Consensus 128 A-~~~aik~a~~~-------~~~~-g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~ 198 (472)
T 3hmu_A 128 A-NDTNIRMVRTY-------WQNK-GQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD 198 (472)
T ss_dssp H-HHHHHHHHHHH-------HHHT-TCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT
T ss_pred H-HHHHHHHHHHH-------HHhc-CCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc
Confidence 5 44444433100 0000 0133333455555556555444333332 355565432 101
Q ss_pred CC--------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--cc
Q 043646 216 LD--------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--IN 280 (625)
Q Consensus 216 ld--------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id 280 (625)
.| +++|++++++. ..+++++|+++.+++++|.+.+ +++|.++|++||+++|+|++++ +|... ..
T Consensus 199 ~~~~~~~~~~~~~le~~i~~~-~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a 277 (472)
T 3hmu_A 199 MDPEEFGLARARELEEAILEL-GENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFG 277 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCH
T ss_pred cCHHHHHHHHHHHHHHHHHhc-CCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccch
Confidence 34 78888888741 1135789999999999999987 9999999999999999999987 33221 11
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCc-ccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPS-TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~-~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
....+. .+|++++| |.+++. ..+|++++++++.+ .+.+. ...+++ ..+.|.
T Consensus 278 ~~~~~v-~pdi~t~s--K~l~gg~~plG~v~~~~~i~~--~~~~~~~~~~~t----------------------~~~np~ 330 (472)
T 3hmu_A 278 TQTMGI-RPHIMTIA--KGLSSGYAPIGGSIVCDEVAH--VIGKDEFNHGYT----------------------YSGHPV 330 (472)
T ss_dssp HHHHTC-CCSEEEEC--GGGTTTSSCCEEEEEEHHHHH--HHTTSCBCCCCT----------------------TTTCHH
T ss_pred hHHhCC-CCceeeec--hhhhcCCcceEEEEECHHHHH--hcccCCccccCC----------------------CCCCHH
Confidence 111111 57888776 999865 35799999988742 22110 000000 012222
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHhhC---CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccC
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQED-VYIESALGRIL---PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIER 434 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~-~l~~~l~~~L~---~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~ 434 (625)
......++++.+ +. +.+.++.+ ++.+++++.|+ +.|.+..+.+ .+.++.+.+..+.. .
T Consensus 331 a~aAa~aaL~~~--~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~----~G~~~~i~~~~~~~---------~ 392 (472)
T 3hmu_A 331 AAAVALENLRIL--EE---ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKI----VGMMASIALTPNKA---------S 392 (472)
T ss_dssp HHHHHHHHHHHH--HH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE----ETTEEEEEECSCGG---------G
T ss_pred HHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cCceEEEEEecCcc---------c
Confidence 222223444443 22 23344444 55555555554 3455554433 34555555532210 0
Q ss_pred CCCC------ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 435 NKPL------HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 435 ~~~l------~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
...+ ....+++.|.+ .||.++++ .+++||++++.+|++|
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iRi~p~~~~t~e~ 437 (472)
T 3hmu_A 393 RAKFASEPGTIGYICRERCFA-NNLIMRHV----------------------------------GDRMIISPPLVITPAE 437 (472)
T ss_dssp TCCBSSCTTHHHHHHHHHHHH-TTBCCEEE----------------------------------TTEEEECCCTTCCHHH
T ss_pred cccccchhHHHHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEECCCCCCHHH
Confidence 0011 03467777765 69998853 1679999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043646 509 FEFILAALEFIAAYG 523 (625)
Q Consensus 509 id~ll~aL~~~~~~~ 523 (625)
+++++++|++++.+.
T Consensus 438 i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 438 IDEMFVRIRKSLDEA 452 (472)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988664
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=186.69 Aligned_cols=294 Identities=10% Similarity=0.061 Sum_probs=182.2
Q ss_pred HHHHHHHHHHh-CCC-----CCCcEE--EeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 124 HEASNYIKRCL-GGG-----QADAII--FCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 124 ~~~~~~ia~~~-g~~-----~~~~vi--ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
.++++.+++++ |.. ++ +|. .| .|+++++..+..++.. ..++||+ |+++.+.|.++.
T Consensus 82 ~~lr~~ia~~~~~~~~~~~~~~-~i~~~~~-~~g~ga~~~~~~~~~~------------~~~~gd~--Vlv~~p~y~~~~ 145 (409)
T 4eu1_A 82 ASFVEEAQKLCFGPTCAALRDG-RIASCQT-LGGTGALRIGGDLLNR------------FVANCNR--IYGPDVGYPNHE 145 (409)
T ss_dssp HHHHHHHHHHHHCSSCHHHHTT-CEEEEEE-SHHHHHHHHHHHHGGG------------TSSSCCE--EEEESSCCTHHH
T ss_pred HHHHHHHHHHHcCCCchhhccC-ceeeeec-ccchHHHHHHHHHHHH------------hcCCCCE--EEEeCCCcHhHH
Confidence 45677777765 654 33 664 36 5677777765444311 1467785 999999999998
Q ss_pred HHHHHcCCeEEEEecC--CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEec
Q 043646 196 LSWRQSLAEVVEIGLD--DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDF 270 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~--~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~ 270 (625)
..++..|++++.++++ .++.+|+++|++++++. .++++++++++++||||.+.+. ++|+++|++||+++++|+
T Consensus 146 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De 223 (409)
T 4eu1_A 146 SIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA--PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDM 223 (409)
T ss_dssp HHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEec
Confidence 8899999999999983 45689999999999741 1356788889999999999885 459999999999999999
Q ss_pred cCcCCC-cc-----ccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEE--EEec-cccc--cCCCCCcccCCceEEeeccc
Q 043646 271 AASGPY-VK-----INLRSR-NIDGYDAIFLATHKFLGGPG-TPGIL--LISK-ALYQ--LGSSPPSTCGGGTVNYVNAF 337 (625)
Q Consensus 271 A~~~g~-~~-----id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l--~v~~-~~~~--l~~~~p~~~ggg~v~~~~~~ 337 (625)
+++... .+ ..+... ....-.+++.|++|.+|.|+ .+|++ ++.+ +... ...+
T Consensus 224 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~---------------- 287 (409)
T 4eu1_A 224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQL---------------- 287 (409)
T ss_dssp SCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHH----------------
T ss_pred cccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHH----------------
Confidence 966432 11 111110 11123467789999998554 47887 5543 3100 0000
Q ss_pred cccccccccchhhhhcCCChhHHHHH-HHHHHHHH--Hh-hcCHHHHHHHHHHHHHHHHHhhCCCC--c-EEEeCCCCCC
Q 043646 338 DEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWV--KE-YIGYEVIKKQEDVYIESALGRILPNQ--N-IQVLGNTSVK 410 (625)
Q Consensus 338 ~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~--~~-~~g~~~i~~~~~~l~~~l~~~L~~l~--g-v~v~~~~~~~ 410 (625)
.........+.+.+.+.+ .+++.-.. .+ ....+.++++.+++++++.+.|.+++ + +++..+
T Consensus 288 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~---- 355 (409)
T 4eu1_A 288 --------ALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER---- 355 (409)
T ss_dssp --------HHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH----
T ss_pred --------HHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC----
Confidence 000011112222333321 12222100 00 11245667778888889999887752 1 444433
Q ss_pred CcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 411 RQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 411 ~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
..+++.|.- +.. +++..|.+++||.+.+|
T Consensus 356 ~~~~~~~~~------------------~~~-~~~~~ll~~~gv~v~p~-------------------------------- 384 (409)
T 4eu1_A 356 QVGMMAYTG------------------LTR-EQVELLRSEYHIYMTLN-------------------------------- 384 (409)
T ss_dssp SCSSEEECC------------------CCH-HHHHHHHHHHCEECCTT--------------------------------
T ss_pred CceEEEEeC------------------CCH-HHHHHHHHcCCEEEcCC--------------------------------
Confidence 235555421 123 44556666789998732
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.||+++.. +++|+++++++|++++
T Consensus 385 -----~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 -----GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp -----CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred -----CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 38888654 5677999999998875
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=182.96 Aligned_cols=357 Identities=13% Similarity=0.014 Sum_probs=206.1
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+.+......... ....+...++.++++++++.+.+ .|+|+++|+.+.
T Consensus 55 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~-~v~~~~sGseA~ 127 (476)
T 3i5t_A 55 RLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW------YMATSPAARLAEKIATLTPGDLN-RIFFTTGGSTAV 127 (476)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT------TCBCHHHHHHHHHHHTTSSTTCC-EEEEESSHHHHH
T ss_pred EEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC------ccCCHHHHHHHHHHHhcCCCCcC-EEEEeCchHHHH
Confidence 48886543 456889999999888542111110 11245667889999999976655 899996666664
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC------------eEEEEecCC--CC-CCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA------------EVVEIGLDD--NG-LLD 217 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~--~~-~ld 217 (625)
...+..++.. ....-+++...+|+..+..|.....+....|. .+..++... .. ..|
T Consensus 128 ~~Aik~a~~~---------~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 198 (476)
T 3i5t_A 128 DSALRFSEFY---------NNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRS 198 (476)
T ss_dssp HHHHHHHHHH---------HHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSC
T ss_pred HHHHHHHHHH---------HHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCc
Confidence 3333222210 00000133333455555666555444433221 234444321 11 112
Q ss_pred --------HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCcc--ccCC
Q 043646 218 --------IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVK--INLR 282 (625)
Q Consensus 218 --------~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~--id~~ 282 (625)
+++|++++++. ..+++++|+++.+++++|.+.+ +++|.++|++||+++|+|++++ +|... ....
T Consensus 199 ~~~~~~~~~~~le~~i~~~-~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~ 277 (476)
T 3i5t_A 199 QEAFLDDLVQEFEDRIESL-GPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASE 277 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHH
T ss_pred hHHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeee
Confidence 78899988741 1135789999999999998766 9999999999999999999987 33221 1111
Q ss_pred -CCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhH
Q 043646 283 -SRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQI 359 (625)
Q Consensus 283 -~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~ 359 (625)
..+. .+|++++| |.+++. ..+|++++++++. +.+.+.......+ ..... .+.|..
T Consensus 278 ~~~~v-~pdi~t~s--K~l~~G~~plg~v~~~~~i~--~~~~~~~~~~~~~-----------------~~~~t~~~np~a 335 (476)
T 3i5t_A 278 KVFGV-VPDIITFA--KGVTSGYVPLGGLAISEAVL--ARISGENAKGSWF-----------------TNGYTYSNQPVA 335 (476)
T ss_dssp HTTCC-CCSEEEEC--GGGGTTSSCCEEEEECHHHH--HTTSGGGCTTCEE-----------------CCCCTTTTCHHH
T ss_pred cccCC-Ccchhhhh--hhhcCCCcCeEEEEECHHHH--HHHhcCCcccccc-----------------cccCCCCcCHHH
Confidence 1111 56888776 999865 4579999998873 3332211000000 00000 122222
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC---CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP---NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~---l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
.....++++.+ +. +.+.++.+++.+++++.|.. .|.+..+.+ .+.++.+.+..+.. ...
T Consensus 336 ~aAa~aaL~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~----~G~~~~i~~~~~~~---------~~~ 397 (476)
T 3i5t_A 336 CAAALANIELM--ER---EGIVDQAREMADYFAAALASLRDLPGVAETRS----VGLVGCVQCLLDPT---------RAD 397 (476)
T ss_dssp HHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE----ETTEEEEEECCC--------------
T ss_pred HHHHHHHHHHH--Hh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cCceeEEEEecCcc---------ccc
Confidence 22233445443 22 24555666666666666654 455544432 33455554432210 000
Q ss_pred CC-----ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHH
Q 043646 437 PL-----HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEF 511 (625)
Q Consensus 437 ~l-----~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ 511 (625)
.. ....+++.|.+ .||.+++. .+++||++++.+|++|+++
T Consensus 398 ~~~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g~~iRi~p~l~~t~e~i~~ 442 (476)
T 3i5t_A 398 GTAEDKAFTLKIDERCFE-LGLIVRPL----------------------------------GDLCVISPPLIISRAQIDE 442 (476)
T ss_dssp CCHHHHHHHHHHHHHHHH-TTEECEEE----------------------------------TTEEEECCCTTCCHHHHHH
T ss_pred cccchhHHHHHHHHHHHH-CCCEEEec----------------------------------CCEEEEECCCCCCHHHHHH
Confidence 11 13467777765 69998741 1689999999999999999
Q ss_pred HHHHHHHHHHhhhhcc
Q 043646 512 ILAALEFIAAYGHRFL 527 (625)
Q Consensus 512 ll~aL~~~~~~~~~~~ 527 (625)
++++|++++.+..+.+
T Consensus 443 ~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 443 MVAIMRQAITEVSAAH 458 (476)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999987765544
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=191.00 Aligned_cols=363 Identities=13% Similarity=0.063 Sum_probs=204.7
Q ss_pred CcchHHHHHHHHHhhC-CCCCCCCCCcchhhHHHHHHHHH-HHHHHHHHhCC--C--CCCcEEEeCChHHHHHHHHHHHh
Q 043646 87 GRSLRYIEDYIINNVL-PFYGNTHTSDSYVGQRMTKMVHE-ASNYIKRCLGG--G--QADAIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~-~~~~n~~~~~~~~~~~~~~~~~~-~~~~ia~~~g~--~--~~~~vift~sGttaal~~l~~~l 160 (625)
+..++.+.+++.+.+. ..|..+. +...+.++ ++.++.+..+. . +.++|++| +|+++++..++.++
T Consensus 115 ~~~~~~~~~al~~~~~~~~Y~~~~--------g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t-~G~~eal~~~~~~l 185 (546)
T 2zy4_A 115 GLDPAAFLHEMVDGILGCNYPVPP--------RMLNISEKIVRQYIIREMGADAIPSESVNLFAV-EGGTAAMAYIFESL 185 (546)
T ss_dssp CCCHHHHHHHHHHHHHTCSCCSSS--------SCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEE-EHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHhhhcCCCCCCc--------CCHHHHHHHHHHHHHHhccCCCCCCCcceEEEE-CCHHHHHHHHHHHh
Confidence 3455667777766653 1222221 11233433 33344444433 1 23488998 89999999988774
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH--cCCeEEEEecCCC--CCCCHHHHHHHHHHhhhCCCCeE
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ--SLAEVVEIGLDDN--GLLDIEALRSQLELYKAAKRPML 236 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~--~G~~vv~v~~~~~--~~ld~~~L~~~l~~~~~~~~~~l 236 (625)
... ..+++||. |+++.+.|+.+...... .|++++.++.+++ ..+|+++|+++++ +++++
T Consensus 186 ~~~----------~l~~~Gd~--Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~k~ 248 (546)
T 2zy4_A 186 KLN----------GLLKAGDK--VAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD-----PAIKI 248 (546)
T ss_dssp HHT----------TSSCTTCE--EEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-----TTEEE
T ss_pred hhh----------hcCCCCCE--EEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-----CCCeE
Confidence 100 01468885 88999999988766543 4789999998753 4689999988765 57999
Q ss_pred EEEecccCccccccC---HHHHHHHH--HHcCCEEEEeccCcCCCc-cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEE
Q 043646 237 GSFSACSNVTGIYSD---TRSIARLL--HQYGGFACFDFAASGPYV-KINLRSRNIDGYDAIFLATHKFLGGPG-TPGIL 309 (625)
Q Consensus 237 v~~~~~~n~TG~~~~---l~~I~~la--~~~g~~vivD~A~~~g~~-~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l 309 (625)
|++++++||||.+.+ +++|+++| +++|+++|+|++++.... +..+.... .+.++++.|++|++|.|+ .+|++
T Consensus 249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~GlRiG~~ 327 (546)
T 2zy4_A 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAIC-PENTLLVYSFSKYFGATGWRLGVV 327 (546)
T ss_dssp EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHC-GGGEEEEEESTTTTTCGGGCEEEE
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhC-CCCEEEEEeCccccCCCCcceEEE
Confidence 999999999999987 55678888 779999999999874321 11111110 134688899999997554 38999
Q ss_pred EEecc-ccc-c-CCCCC-------cccCCceEEeeccccccccccccch-------hhhhcCCChhHHHHHHH--HHHHH
Q 043646 310 LISKA-LYQ-L-GSSPP-------STCGGGTVNYVNAFDEKDTLYLEDI-------EERENGGTPQIVQMIRA--ALAFW 370 (625)
Q Consensus 310 ~v~~~-~~~-l-~~~~p-------~~~ggg~v~~~~~~~~~~~~~~~~~-------~~~~~~gt~~~~~~~~a--al~~~ 370 (625)
+++++ +.. + ..+.+ ..+...+ ..++. ..+.+.. ......+.+.+.+...+ ++..+
T Consensus 328 ~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~---~~p~~---~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~al 401 (546)
T 2zy4_A 328 AAHQQNVFDLALDKLQESEKVALDHRYRSLL---PDVRS---LKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFAL 401 (546)
T ss_dssp EEESSCHHHHHHHTSCHHHHHHHHHHHTTTC---SCGGG---CCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHhhcchhhhHHHHHHhhhcc---ccccc---hhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHH
Confidence 99886 421 1 00000 0000000 00000 0000000 00111233333333211 11122
Q ss_pred HHh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC-------CCCCh-H
Q 043646 371 VKE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN-------KPLHG-P 441 (625)
Q Consensus 371 ~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~-------~~l~~-~ 441 (625)
+.+ ....+.+++..++..+.+.+.|. + ++.+.. ...+.+.+.-.+... ... ..+ .+.+. .
T Consensus 402 l~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~----~~~~~~l~~~l~~~~----~~~-~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 402 MDEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDE----NAVDYYTLIDLQDVT----AKL-YGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCT----TBCCSEEEEEHHHHH----HHH-HCHHHHHHHHHHCCHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCC----CCeeEEEEEEHHHhh----ccc-ccHHHHHHhhccCCHHH
Confidence 211 11234556666666777788775 3 232222 234555444322100 000 000 00112 2
Q ss_pred HHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 442 FVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 442 ~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
++.+.| .++||.+++|..|+. .++++||+++ ..+++++++++++|++++.
T Consensus 471 ~l~~ll-~~~gV~v~pG~~F~~----------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~~l~ 520 (546)
T 2zy4_A 471 MLFRIA-DETGIVLLPGRGFGS----------------------------NRPSGRASLA-NLNEYEYAAIGRALRKMAD 520 (546)
T ss_dssp HHHHHH-HHHSCCCEESSCTTC----------------------------SSCEEEEESS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHCCEEEeCccccCC----------------------------CCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence 345555 568999999988752 1478999997 4579999999999998876
Q ss_pred hh
Q 043646 522 YG 523 (625)
Q Consensus 522 ~~ 523 (625)
+.
T Consensus 521 ~~ 522 (546)
T 2zy4_A 521 EL 522 (546)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-17 Score=178.88 Aligned_cols=336 Identities=16% Similarity=0.105 Sum_probs=189.4
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+.....+ .+ ......+++++++++++ +.+ +|+|+++|+.+
T Consensus 55 ~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~sGsea 123 (434)
T 3l44_A 55 NKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY----GT-----PTALEVKFAKMLKEAMP-ALD-KVRFVNSGTEA 123 (434)
T ss_dssp CEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC----SS-----CCHHHHHHHHHHHHHCT-TCS-EEEEESSHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC----CC-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCchHHH
Confidence 3588876653 35889999998887542111 01 12345668889999987 444 89999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch-hHHHHHHcCC-------------------eEEEEecC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-NLLSWRQSLA-------------------EVVEIGLD 211 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G~-------------------~vv~v~~~ 211 (625)
+..++.+.. ...++++ |++....|+. ........|. .+..+|.+
T Consensus 124 -~~~ai~~a~-------------~~~~~~~--vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 3l44_A 124 -VMTTIRVAR-------------AYTGRTK--IMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN 187 (434)
T ss_dssp -HHHHHHHHH-------------HHHCCCE--EEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT
T ss_pred -HHHHHHHHH-------------HhhCCCE--EEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc
Confidence 444444331 0123443 5554444443 3322221222 23333322
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCC---Ccc-ccCCC
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP---YVK-INLRS 283 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g---~~~-id~~~ 283 (625)
|+++|++++++. .+++++|+++.+++++|.+.| +++|.++|++||+++|+|+++..- ... .+...
T Consensus 188 -----d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~ 260 (434)
T 3l44_A 188 -----NVETLKEALDKW--GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLG 260 (434)
T ss_dssp -----CHHHHHHHHHHH--GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHT
T ss_pred -----cHHHHHHHHHhC--CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcC
Confidence 899999999742 235788888888888999988 999999999999999999998632 100 11111
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc--ccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 284 RNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS--TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~--~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
. .+|++++| |.++++..+|++++++++ ++.+.+. ...+++ ..+.+....
T Consensus 261 ~---~~di~t~s--K~~~~G~~iG~~~~~~~i--~~~~~~~~~~~~~~t----------------------~~~~~~a~a 311 (434)
T 3l44_A 261 V---TPDLTALG--KVIGGGLPIGAYGGKKEI--MEQVAPLGPAYQAGT----------------------MAGNPASMA 311 (434)
T ss_dssp C---CCSEEEEE--GGGGTTSSCEEEEECHHH--HTTBTTTSSBCCCCT----------------------TTTCHHHHH
T ss_pred C---CCCeeehh--hhhcCCcCeeeEEEcHHH--HHhhccCCCcccCCC----------------------CCcCHHHHH
Confidence 1 46777665 999866678999999887 3333221 000000 011111112
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP----NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKP 437 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 437 (625)
...++++.+ +. +.+.++.+++.+++++.|.+ .+.+....+ .+.++.+.+......+. ........
T Consensus 312 aa~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~--~~~~~~~~ 380 (434)
T 3l44_A 312 SGIACLEVL--QQ---EGLYEKLDELGATLEKGILEQAAKHNIDITLNR----LKGALTVYFTTNTIEDY--DAAQDTDG 380 (434)
T ss_dssp HHHHHHHHH--TS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE----ETTEEEEEESSSCCCSH--HHHHHSCH
T ss_pred HHHHHHHHH--Hc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe----eccEEEEEEecCcccch--hhccccCH
Confidence 223334433 22 34455555556666665544 333222211 33455555432110000 00000000
Q ss_pred CChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 043646 438 LHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 438 l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~ 517 (625)
.....+.+.|.+ .||.++++. .+.+|++ +.+|++|+++++++|+
T Consensus 381 ~~~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~rl~--~~~t~e~i~~~l~~l~ 424 (434)
T 3l44_A 381 EMFGKFFKLMLQ-EGVNLAPSK---------------------------------YEAWFLT--TEHTKEDIEYTIEAVG 424 (434)
T ss_dssp HHHHHHHHHHHH-TTEECCSST---------------------------------TCCEECC--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCeEEeecC---------------------------------CCcEEEe--cccCHHHHHHHHHHHH
Confidence 012467777765 699998652 2457886 4679999999999999
Q ss_pred HHHHhh
Q 043646 518 FIAAYG 523 (625)
Q Consensus 518 ~~~~~~ 523 (625)
+++.+.
T Consensus 425 ~~l~~~ 430 (434)
T 3l44_A 425 RAFAAL 430 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=188.25 Aligned_cols=339 Identities=12% Similarity=0.048 Sum_probs=205.4
Q ss_pred ceEeccCCCCCc-chHHHHHHHHHhhCCCCCCCCCCcchhhH-HHHHHHHHHHHHHHHHhC------CCCCCcEEEeCCh
Q 043646 77 RLTYADHTASGR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQ-RMTKMVHEASNYIKRCLG------GGQADAIIFCGAG 148 (625)
Q Consensus 77 ~~~Yld~~~~~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~-~~~~~~~~~~~~ia~~~g------~~~~~~vift~sG 148 (625)
..+-|+.+.... .|+.+.+++.+.+... +.+...|.... + ..+..++|+.|+++++ ++++ +|++| +|
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~--~~~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~-~iv~t-~G 131 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVS--PWHRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDR-YIVFG-VG 131 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEEC--TTTTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTC-EEEEE-SH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcC--CcccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCC-EEEEe-CC
Confidence 445555544432 3456677776665211 01110111111 1 0112345556666554 4444 89998 89
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHh
Q 043646 149 TTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELY 228 (625)
Q Consensus 149 ttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~ 228 (625)
++++|..++.++...... ..+++||+ |+++.+.|+.+...++..|++++.+. +|+++|+++++
T Consensus 132 ~~~al~~~~~~l~~~~~~-------~~~~~Gd~--Vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~-- 194 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTA-------TPDAPESK--VVAHAPFYPVFREQTKYFDKKGYVWA------GNAANYVNVSN-- 194 (427)
T ss_dssp HHHHHHHHHHHHSCCTTT-------CTTSCCEE--EEECSSCCHHHHHHHHHSCBTTEEEE------EEGGGGTTCSC--
T ss_pred HHHHHHHHHHHHhhcccc-------ccCCCCCE--EEEeCCCcccHHHHHHHcCCeeeeec------CCHHHHHHhhc--
Confidence 999999998887200000 00367775 99999999999888888999877544 46677777665
Q ss_pred hhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-Cce
Q 043646 229 KAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPG 307 (625)
Q Consensus 229 ~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G 307 (625)
+++++|++++++||||.+.+ + + ++ ++..+.|+++..+... +..+. .+.++++.|++|.+|.|+ .+|
T Consensus 195 ---~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~~s--~~~~~-~~~~i~~~S~SK~~g~~G~RiG 261 (427)
T 2hox_A 195 ---PEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPHYT--PIKYK-ADEDILLFTMSKFTGHSGSRFG 261 (427)
T ss_dssp ---GGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTTTS--CCCSC-BCCSEEEEEHHHHTSCGGGCCE
T ss_pred ---CCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCCCC--ccccC-CCceEEEEeChhcCCCCCceEE
Confidence 46899999999999999999 4 2 33 6788999876532211 11111 256899999999997554 389
Q ss_pred EEEEe-ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH-HHHHHHHH--h------hcCH
Q 043646 308 ILLIS-KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR-AALAFWVK--E------YIGY 377 (625)
Q Consensus 308 ~l~v~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~-aal~~~~~--~------~~g~ 377 (625)
+++++ +++. +.+... ......+++.+.+.+. .++.-... + ..-.
T Consensus 262 ~~~~~~~~l~--~~l~~~------------------------~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~ 315 (427)
T 2hox_A 262 WALIKDESVY--NNLLNY------------------------MTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLN 315 (427)
T ss_dssp EEEECCHHHH--HHHHHH------------------------HHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHH
T ss_pred EEEECCHHHH--HHHHHH------------------------HHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHH
Confidence 99995 5652 111100 1111234444444321 12211000 0 0113
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEE--eC-CCC-------CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 378 EVIKKQEDVYIESALGRILPNQNIQV--LG-NTS-------VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l~gv~v--~~-~~~-------~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+..+++.+..++++.+.|.+++++.+ +. +.. ...++++.+.-.+.. ..++++.|
T Consensus 316 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~----------------~~~~~~~l 379 (427)
T 2hox_A 316 TFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------------EDKDCYQT 379 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----------------GGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc----------------HHHHHHHH
Confidence 34566777788999999999888876 22 210 123456555544321 23466666
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||.+++|..|.. .++++|||++. ++++++.+++.|++++..
T Consensus 380 l~~~gI~v~pg~~f~~----------------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 380 FQNGRINTQNGVGFEA----------------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHTTEECEEGGGGTS----------------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred HHHCCEEEcCCCccCC----------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 5668999999887641 14899999983 889999999999987643
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=180.63 Aligned_cols=337 Identities=11% Similarity=0.039 Sum_probs=192.7
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|+.++. ..++.|.+++.+.+.....+ .+ ......+++++++++++ ..+ +++|+++|+.+
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~----~~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~~Gsea 121 (429)
T 3k28_A 53 NEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF----GA-----PTEIENKLAKLVIERVP-SIE-IVRMVNSGTEA 121 (429)
T ss_dssp CEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC----SS-----CCHHHHHHHHHHHHHST-TCS-EEEEESSHHHH
T ss_pred CEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc----CC-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCChHHH
Confidence 3589887653 36889999998887542111 01 12345668888999987 344 89999655555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------------eEEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------------EVVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------------~vv~v~~~~ 212 (625)
+..++.+.. ...++++ +|+..+..|......+...|. +++.++.+
T Consensus 122 -~~~ai~~a~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (429)
T 3k28_A 122 -TMSALRLAR-------------GYTGRNK-ILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN- 185 (429)
T ss_dssp -HHHHHHHHH-------------HHHTCCE-EEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-
T ss_pred -HHHHHHHHH-------------HhhCCCE-EEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-
Confidence 444433321 0113333 444455555444333222232 23333322
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK--INLRSRNI 286 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~~~ 286 (625)
|+++|++++++. .+++++|+++.+++++|.+.+ +++|.++|++||+++|+|+++..-... ......+
T Consensus 186 ----d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~- 258 (429)
T 3k28_A 186 ----DLESVKYAFEQF--GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYG- 258 (429)
T ss_dssp ----CHHHHHHHHHHH--GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHT-
T ss_pred ----CHHHHHHHHHhC--CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhC-
Confidence 899999999742 235788888888888999988 999999999999999999998621000 0000011
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC--hhHHHHHH
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT--PQIVQMIR 364 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~~ 364 (625)
-.+|++++| |.++++..+|++++++++ ++.+.+... .+..+| .+.++. .
T Consensus 259 ~~~di~t~s--K~~~~G~~iG~~~~~~~~--~~~~~~~~~------------------------~~~~~t~~~~~~a~-a 309 (429)
T 3k28_A 259 VTPDLTCLG--KVIGGGLPVGAYGGKAEI--MRQVAPSGP------------------------IYQAGTLSGNPLAM-A 309 (429)
T ss_dssp CCCSEEEEC--GGGGTTSCCEEEEECHHH--HTTBTTTSS------------------------BCCCCTTTTCHHHH-H
T ss_pred CCCceehhh--hhhcCCCCeEEEEEcHHH--HhhhccCCC------------------------ccccCCCCCChHHH-H
Confidence 146777655 999765568999999887 333322100 000111 222222 2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
++++.+ +... +.+.++.+++.+++++.|.++ +.+..... .+.++.+.+.......+. ..........
T Consensus 310 aa~aal--~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 380 (429)
T 3k28_A 310 AGYETL--VQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINR----AGSMIGIFFTDEPVINYD--AAKSSNLQFF 380 (429)
T ss_dssp HHHHHH--HTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEEEESSSSCCCSHH--HHTTSCHHHH
T ss_pred HHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEe----eccEEEEEEecCCccccc--ccccccHHHH
Confidence 222222 2222 567777777788887777653 32222211 234455544321100000 0000000012
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.++.+.|.+ .||.++++. .+.+|+++ .+|++|+++++++|++++
T Consensus 381 ~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~r~~~--~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 381 AAYYREMVE-QGVFLPPSQ---------------------------------FEGLFLST--VHSDADIEATIAAAEIAM 424 (429)
T ss_dssp HHHHHHHHH-TTEECCSST---------------------------------TSCBCCCT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEecCC---------------------------------CCCEEEEC--CCCHHHHHHHHHHHHHHH
Confidence 567777765 699998641 25578864 679999999999999988
Q ss_pred Hh
Q 043646 521 AY 522 (625)
Q Consensus 521 ~~ 522 (625)
.+
T Consensus 425 ~~ 426 (429)
T 3k28_A 425 SK 426 (429)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=180.16 Aligned_cols=349 Identities=11% Similarity=0.020 Sum_probs=193.8
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPF-YGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTT 150 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtt 150 (625)
..|+|..+ .|..++.|.+++.+++... +.+... +. .....++.+++.+.++++++...+ .|+|+.+|+.
T Consensus 63 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~--~~-~~~~~~l~~~la~~l~~~~~~~~~-~v~f~~sGse 138 (472)
T 1ohv_A 63 NRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPA--LG-ILPPENFVEKLRESLLSVAPKGMS-QLITMACGSC 138 (472)
T ss_dssp CEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCC--TT-TSCBTTHHHHHHHTGGGGCCTTCC-EEEEESSHHH
T ss_pred CEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccc--cc-cccHHHHHHHHHHHHHHhCCCCcC-EEEEeCCchh
Confidence 45888744 3556889999998875321 111100 00 011134455566666666654444 8999977777
Q ss_pred HHHHHHHHHhcccc---cc----hhhh--hhhhccCCC---CceEEEEcCCCCchhHHHHHHcCCeE-----------EE
Q 043646 151 AAIKRLQEVMGITV---PS----IMRD--KLITSLRDE---ERWVVFLGPYEHHSNLLSWRQSLAEV-----------VE 207 (625)
Q Consensus 151 aal~~l~~~l~~~~---~~----~~~~--~~~~~l~~g---d~~~Vlv~~~~h~s~~~~~~~~G~~v-----------v~ 207 (625)
++...+-.++.... .+ ..++ .....-+|| ++ +|......|.....++...|... ..
T Consensus 139 A~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~-ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 139 SNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYS-ILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCE-EEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred HHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCe-EEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 74444433321000 00 0000 000000134 33 44444555655554444433211 12
Q ss_pred EecCCC-C-------------CCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEE
Q 043646 208 IGLDDN-G-------------LLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (625)
Q Consensus 208 v~~~~~-~-------------~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~viv 268 (625)
++.... . ..|+++|+++|++... ..++++|+++.++|++|.+.| +++|.++|++||+++|+
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 232210 0 1268899999874211 127899999999999999888 99999999999999999
Q ss_pred eccCc-CCCcc--ccCCCCCCC-CCcEEEEcCCCC-CCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 269 DFAAS-GPYVK--INLRSRNID-GYDAIFLATHKF-LGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 269 D~A~~-~g~~~--id~~~~~~~-~~D~v~~S~hK~-lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
|++++ +|... +.+..++.. .+|++++| |+ ++ | |+++ ++++ ....+...+ ++
T Consensus 298 DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~---G-G~~~-~~~~---~~~~~~~~~-~T------------- 353 (472)
T 1ohv_A 298 DEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---G-GFFH-KEEF---RPNAPYRIF-NT------------- 353 (472)
T ss_dssp ECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---E-EEEE-CGGG---SCSSSSSSC-CS-------------
T ss_pred eCcccCCCCCCCchhccccCCCCCCCEEEEc--ccccc---C-CccC-chhh---ccccccccc-Cc-------------
Confidence 99987 44432 233332110 27888766 98 55 2 6655 5444 111111110 00
Q ss_pred cccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----Cc-EEEeCCCCCCCcceEEEE
Q 043646 344 YLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QN-IQVLGNTSVKRQAILSFL 418 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~g-v~v~~~~~~~~~~i~~f~ 418 (625)
..+.+.....+.++++.+. . +.+.++.+.+++++++.|.++ |+ +..+.+ .+.++.|.
T Consensus 354 ---------~~~~~~~~aaa~aal~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~----~g~~~~~~ 415 (472)
T 1ohv_A 354 ---------WLGDPSKNLLLAEVINIIK--R---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG----RGTFCSFD 415 (472)
T ss_dssp ---------SSSCHHHHHHHHHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE----ETTEEEEE
T ss_pred ---------cCccHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC----CceEEEEE
Confidence 0122222233345555542 2 235567777777777777553 42 332222 24555553
Q ss_pred eccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEE
Q 043646 419 VYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRI 498 (625)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRi 498 (625)
+... .....+++.|.+ +||.++++. .+++||
T Consensus 416 ~~~~---------------~~~~~~~~~l~~-~Gv~~~~~g---------------------------------~~~iRi 446 (472)
T 1ohv_A 416 TPDE---------------SIRNKLISIARN-KGVMLGGCG---------------------------------DKSIRF 446 (472)
T ss_dssp CSSH---------------HHHHHHHHHHHH-TTEECEEET---------------------------------TTEEEE
T ss_pred eCCh---------------hHHHHHHHHHHH-CCeEEecCC---------------------------------CCEEEE
Confidence 3210 013567887865 799987531 278999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 499 TFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 499 s~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++.+|++|+++++++|++++.+
T Consensus 447 ~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 447 RPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-17 Score=177.10 Aligned_cols=202 Identities=10% Similarity=0.064 Sum_probs=128.1
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+.... +.. + ..+...+++++++++++ +.+ +|+|++ |.++
T Consensus 52 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~-----~~~~~~~la~~l~~~~~-~~~-~v~~~~-ggse 119 (427)
T 3fq8_A 52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT---SFG-A-----PCALENVLAEMVNDAVP-SIE-MVRFVN-SGTE 119 (427)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---CCS-S-----CCHHHHHHHHHHHHHST-TCS-EEEEES-SHHH
T ss_pred CEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC---CcC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeC-CHHH
Confidence 3488876553 358899999998885431 110 1 23456778899999998 444 899985 4555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------------CeEEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------------AEVVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------------~~vv~v~~~~ 212 (625)
++..++.... ....+++ +|+..+..|..........| ..++.++.+
T Consensus 120 a~~~al~~a~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (427)
T 3fq8_A 120 ACMAVLRIMR-------------AYTGRDK-IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN- 184 (427)
T ss_dssp HHHHHHHHHH-------------HHHCCCE-EEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-
T ss_pred HHHHHHHHHH-------------HhhCCCE-EEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-
Confidence 4555543221 0112233 44444544443321111111 124445543
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc--ccCCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK--INLRSRNI 286 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~--id~~~~~~ 286 (625)
|+++|++++++. .+++++|+++.++|++|.+.+ +++|.++|++||+++|+|++++.-... ......+
T Consensus 185 ----d~~~le~~l~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~- 257 (427)
T 3fq8_A 185 ----DLEAVKALFAEN--PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFG- 257 (427)
T ss_dssp ----CHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTT-
T ss_pred ----CHHHHHHHHHhC--CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcC-
Confidence 899999999842 236889999999999999999 999999999999999999998721000 0011111
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
-.+|++++| |.+++...+|++++++++
T Consensus 258 ~~~di~t~s--K~~~~G~~~G~~~~~~~~ 284 (427)
T 3fq8_A 258 VTPDLTTLG--KIIGGGLPVGAYGGKREI 284 (427)
T ss_dssp CCCSEEEEC--GGGGTTSSCEEEEECHHH
T ss_pred CCCChhhhh--hhhhCCcceEEEEEcHHH
Confidence 146877666 999843348999999887
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=171.90 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=122.8
Q ss_pred eEeccCCCCC------cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTASG------RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~~------~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++. ..++.|.+++.+.+.....+ . + ..+...+++++++++++ ..+ .++|+++|+.+
T Consensus 53 ~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~---~-~-----~~~~~~~la~~l~~~~~-~~~-~v~~~~sGsea 121 (429)
T 4e77_A 53 KAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF---G-A-----PTEMEVKMAQLVTDLVP-TMD-MVRMVNSGTEA 121 (429)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC---S-S-----CCHHHHHHHHHHHHHST-TCS-EEEEESSHHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc---C-C-----CCHHHHHHHHHHHhhCC-CCC-EEEEeCcHHHH
Confidence 4589887654 35789999999988643211 0 1 12456778899999987 444 89999555555
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------------eEEEEecCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------------EVVEIGLDD 212 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------------~vv~v~~~~ 212 (625)
+..++.+.. ...++++ +|+.....|......+...|. .+..++.
T Consensus 122 -~~~al~~a~-------------~~~~~~~-ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (429)
T 4e77_A 122 -TMSAIRLAR-------------GYTGRDK-IIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-- 184 (429)
T ss_dssp -HHHHHHHHH-------------HHHCCCE-EEEETTCCCC------------------CCCTTSCGGGGTTEEEECT--
T ss_pred -HHHHHHHHH-------------HhhCCCE-EEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC--
Confidence 444444321 0112333 444445555444322211111 2223332
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC---CCccccCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG---PYVKINLRSRN 285 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~---g~~~id~~~~~ 285 (625)
.|+++|++++++. .+++++|+++.+++.+|.+.| +++|.++|++||+++|+|++++. |. .......+
T Consensus 185 ---~d~~~le~~l~~~--~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~-~~~~~~~~ 258 (429)
T 4e77_A 185 ---NDLASVRQAFEQY--PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL-AGAQDYYH 258 (429)
T ss_dssp ---TCHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT-TCHHHHTT
T ss_pred ---CCHHHHHHHHHhc--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc-chHHHhcC
Confidence 2899999999842 235778887777777888888 99999999999999999999872 11 11111111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
. .+|++++| |.+++...+|++++++++
T Consensus 259 ~-~pdi~t~s--K~~~~G~~~G~~~~~~~~ 285 (429)
T 4e77_A 259 V-IPDLTCLG--KIIGGGMPVGAFGGRREV 285 (429)
T ss_dssp C-CCSEEEEE--GGGGTTSCCEEEEECHHH
T ss_pred C-CCCeeeec--ccccCCCCeEEEEECHHH
Confidence 1 45877555 999865568999998887
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=183.50 Aligned_cols=193 Identities=11% Similarity=0.014 Sum_probs=141.7
Q ss_pred HHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 91 RYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 91 ~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
..|++++.+.... ...++.. .+.++. ...+++++++++++|++... .++|+ +|+ +++..++.++
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~~-g~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~-sGt-~Ai~~al~al-------- 103 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPTT-GYGYDD---IGRDTLEKVYADVFGAEAGLVRPQII-SGT-HAISTALFGI-------- 103 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCCSC---HHHHHHHHHHHHHTTCSEECCBTTSC-SHH-HHHHHHHHTT--------
T ss_pred HHHHHHHHHhchhhhhcCCCC-CCCCCh---hhHHHHHHHHHHHhCCCcccccceee-CHH-HHHHHHHHHh--------
Confidence 4677777665321 1122222 122222 23678999999999987541 22365 675 5666666555
Q ss_pred hhhhhhccCCCCceEEEEcC-CCCchhHHHH----------HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 169 RDKLITSLRDEERWVVFLGP-YEHHSNLLSW----------RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~----------~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+++||+ |+++. ..|.+....+ +..|++++.++.++++.+|+++|+++++ +++++|
T Consensus 104 -------~~~Gd~--Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~-----~~tk~V 169 (431)
T 3ht4_A 104 -------LRPGDE--LLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH-----SNTKMI 169 (431)
T ss_dssp -------CCTTCE--EEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC-----TTEEEE
T ss_pred -------CCCCCE--EEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC-----CCCeEE
Confidence 578886 88887 8888876544 3369999999998889999999999997 589999
Q ss_pred EEec----ccCccccccCHHHHHHHHHH--cCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCC---CCCceE
Q 043646 238 SFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGG---PGTPGI 308 (625)
Q Consensus 238 ~~~~----~~n~TG~~~~l~~I~~la~~--~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~G~ 308 (625)
++++ +++++|.+.++++|+++|++ +|+++++|++++.+........+ ++|+++.|++|++|| |.| |+
T Consensus 170 ~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~---g~Di~~~S~sK~lgg~~~~~G-G~ 245 (431)
T 3ht4_A 170 GIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHV---GADLMAGSLIKNPGGGIVKTG-GY 245 (431)
T ss_dssp EEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGT---TCSEEEEETTSGGGTTTCSSC-EE
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcccc---CCeEEEcCccccCCCCCCCce-EE
Confidence 9996 55555666789999999999 99999999999877643333333 789999999999876 666 99
Q ss_pred EEEeccc
Q 043646 309 LLISKAL 315 (625)
Q Consensus 309 l~v~~~~ 315 (625)
+++++++
T Consensus 246 v~~~~~l 252 (431)
T 3ht4_A 246 IVGKEQY 252 (431)
T ss_dssp EEECHHH
T ss_pred EEecHHH
Confidence 9998876
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=178.13 Aligned_cols=326 Identities=14% Similarity=0.048 Sum_probs=193.1
Q ss_pred CcchHHHHHHHHHhh-CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCC-cEEEeCChHHHHHHHHHHHhcc
Q 043646 87 GRSLRYIEDYIINNV-LPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QAD-AIIFCGAGTTAAIKRLQEVMGI 162 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l-~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~-~vift~sGttaal~~l~~~l~~ 162 (625)
.+.++.|.++.. .+ .. .....|....+..++.+.+.+++.+..+.. +++ +++.| +|++.++..++.++.
T Consensus 46 ~~~~~~v~~a~~-~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t-~G~~~al~~~~~~l~- 118 (405)
T 3k7y_A 46 LHIFDSVLNADK-LVTEN----YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQC-IGGTGAIFVLLEFLK- 118 (405)
T ss_dssp BCCCHHHHHHHH-HHHHH----CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEE-EHHHHHHHHHHHHHH-
T ss_pred CcccHHHHHHHH-HhcCC----CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEc-CchHHHHHHHHHHHH-
Confidence 456778888865 22 11 001112222233445555555543333322 222 35777 788899999888772
Q ss_pred cccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec-CC-CCCCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 163 TVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL-DD-NGLLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
.+.| |+ |+++.+.|+.+...++..|++++.+|+ ++ +..+|+++|++++++. +++++++++
T Consensus 119 ------------~~~~-d~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~i~l~ 180 (405)
T 3k7y_A 119 ------------MLNV-ET--LYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI---PNGSSVILQ 180 (405)
T ss_dssp ------------TTTC-CE--EEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS---CSSCEEEEC
T ss_pred ------------hcCC-CE--EEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC---CCCeEEEEe
Confidence 1226 75 999999999999889999999999998 33 4689999999999742 356788886
Q ss_pred cc-cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC-ccc-----cCCCC-CCCCCcEEEEcCCCCCCCCC-CceE
Q 043646 241 AC-SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VKI-----NLRSR-NIDGYDAIFLATHKFLGGPG-TPGI 308 (625)
Q Consensus 241 ~~-~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-~~i-----d~~~~-~~~~~D~v~~S~hK~lggp~-g~G~ 308 (625)
.+ +||||.+.+ +++|+++|++||+++++|+++..-. ... .+..+ ....--+++.|++|.|+.|+ .+|+
T Consensus 181 ~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~ 260 (405)
T 3k7y_A 181 ISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGA 260 (405)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceE
Confidence 65 899999977 5668889999999999999965211 110 01111 01122366779999998443 4899
Q ss_pred EEE---eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHH-HHHHHHH-HHh--hcCHHHH
Q 043646 309 LLI---SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMI-RAALAFW-VKE--YIGYEVI 380 (625)
Q Consensus 309 l~v---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~-~aal~~~-~~~--~~g~~~i 380 (625)
+++ ++++. ..+. ..... ..+.....++.. +.+ .+++.-- +.+ ....+.+
T Consensus 261 ~~~~~~~~~~~--~~~~--------------------~~l~~-~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~ 317 (405)
T 3k7y_A 261 LHIVCKNQEEK--KIVF--------------------NNLCF-IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQL 317 (405)
T ss_dssp EEEECSSHHHH--HHHH--------------------HHHHH-HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHH--HHHH--------------------HHHHH-HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 875 22221 0000 00000 001112223322 221 1112110 000 0113345
Q ss_pred HHHHHHHHHHHHHhhC----CCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 381 KKQEDVYIESALGRIL----PNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 381 ~~~~~~l~~~l~~~L~----~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
+++.+..++++.+.|. ++. ++++..+ +++.+.|.-.+ . ++++.| +++||
T Consensus 318 ~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p----~gg~f~~~~l~------------------~-~~~~~L-~~~gV 373 (405)
T 3k7y_A 318 SQRITNNRILFFNKLETYQKKYNLNYDWNVYKK----QRGLFSFVPLL------------------A-KIAEHL-KTHHI 373 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS----CCSSEEECGGG------------------G-GGTTTT-TTTTE
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC----CceEEEecCCC------------------H-HHHHHH-HHCCE
Confidence 5667777888888887 652 1344443 45666654332 1 334567 67899
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.+.+| + |||++. .+++++++++++|++++.+
T Consensus 374 ~v~p~-----------------------------------~--Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 374 YIINN-----------------------------------G--RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ECCTT-----------------------------------S--EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred eecCC-----------------------------------C--eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 98742 3 999952 4679999999999998764
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-17 Score=175.22 Aligned_cols=337 Identities=12% Similarity=0.023 Sum_probs=191.2
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+. +..++.|.+++.+.+... . +.. + ..+...+++++++++++ ..+ +|+|+++|+.+
T Consensus 56 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~-~~~-~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~sgseA 124 (434)
T 2epj_A 56 ARIVDLVLAYGPLILGHKHPRVLEAVEEALARG--W-LYG-A-----PGEAEVLLAEKILGYVK-RGG-MIRFVNSGTEA 124 (434)
T ss_dssp CEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-CCS-S-----CCHHHHHHHHHHHHHHC-TTC-EEEEESSHHHH
T ss_pred CEEEEcccchhcccCCCCCHHHHHHHHHHHHhC--C-CCC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCCHHHH
Confidence 357787543 346789999999888542 1 111 1 23456778899999985 334 89999555554
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH--------------HcCC------eEEEEecC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR--------------QSLA------EVVEIGLD 211 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--------------~~G~------~vv~v~~~ 211 (625)
+..++.+.. .+.++++ |++....|+....... ..|+ .++.++.
T Consensus 125 -~~~al~~ar-------------~~~~~~~--vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~- 187 (434)
T 2epj_A 125 -TMTAIRLAR-------------GYTGRDL--ILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY- 187 (434)
T ss_dssp -HHHHHHHHH-------------HHHCCCE--EEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-
T ss_pred -HHHHHHHHH-------------HhhCCCe--EEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-
Confidence 555554410 0123343 4444444443221110 1232 3556664
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCC
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK---INLRSR 284 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~ 284 (625)
.|+++|++++++. .+++++|+++.++++||.+.| +++|.++|++||+++|+|++++ +... ......
T Consensus 188 ----~d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~ 260 (434)
T 2epj_A 188 ----NDVEALERVFAEY--GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYF 260 (434)
T ss_dssp ----TCHHHHHHHHHHH--GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHH
T ss_pred ----CCHHHHHHHHHhC--CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHh
Confidence 2899999999742 136788888888888999988 9999999999999999999988 2210 111111
Q ss_pred CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHH
Q 043646 285 NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMI 363 (625)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~ 363 (625)
+. .+|++++ +|++++...+|++++++++ ++.+.+. +... .... .+.+......
T Consensus 261 ~~-~~di~s~--sK~l~~G~~~G~v~~~~~~--~~~l~~~--~~~~-------------------~~~t~~~~~~~~aa~ 314 (434)
T 2epj_A 261 NI-EGDIIVL--GKIIGGGFPVGAVAGSREV--MSLLTPQ--GKVF-------------------NAGTFNAHPITMAAG 314 (434)
T ss_dssp TC-CCSEEEE--EGGGGTTSSCEEEEECHHH--HTTBTTT--SSBC-------------------CCCTTTTCHHHHHHH
T ss_pred CC-CCCeeee--cchhcCCcceeeeeecHHH--HHhhccC--CCcc-------------------cCCCCCcCHHHHHHH
Confidence 11 4687655 5999863357999999887 3333221 0000 0000 1122222223
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.++++.+ +. +.+.++.+++.+++.+.|.++ +....+.+ .+.++.+.+.......+. .........
T Consensus 315 ~a~l~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~--~~~~~~~~~ 383 (434)
T 2epj_A 315 LATLKAL--EE---EPVYSVSREAAKALEEAASEVLDRTGLPYTINR----VESMMQLFIGVEEVSNAA--QARKADKKF 383 (434)
T ss_dssp HHHHHHH--HH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE----ETTEEEEEETCSCCSSHH--HHTTSCHHH
T ss_pred HHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE----eeeEEEEEEeCCCcccch--hccccCHHH
Confidence 3445544 22 234566666777777777553 22111111 335555544321000000 000000012
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+.+.|.+ +||.+++|. ...+|++ ..+|++|+++++++|+++
T Consensus 384 ~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 427 (434)
T 2epj_A 384 YVKLHEEMLR-RGVFIAPSN---------------------------------LEAVFTG--LPHQGEALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHHHHHH-TTEECCSST---------------------------------TSCEECC--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCeEEeccC---------------------------------CCcEEEe--ccCCHHHHHHHHHHHHHH
Confidence 3567888865 799998652 1235554 578999999999999998
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+.+
T Consensus 428 l~~ 430 (434)
T 2epj_A 428 LKT 430 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-16 Score=170.96 Aligned_cols=335 Identities=13% Similarity=-0.001 Sum_probs=185.9
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
.|+|..+. +..++.|.+++.+.+... . +.. ...+..+++.+++++.++ +.+ .|+|++ |.+++
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~-~~~------~~~~~~~~la~~l~~~~~-~~~-~v~~~~-gg~eA 125 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHG--V-QYA------ASHPLEVRWAERIVAAFP-SIR-KLRFTG-SGTET 125 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT--C-SSC------SSCHHHHHHHHHHHHHCT-TCS-EEEEES-CHHHH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhC--C-CCC------CCCHHHHHHHHHHHhhCC-CCC-EEEEeC-CHHHH
Confidence 47887544 346789999999888542 1 111 134567788889988886 444 899984 55555
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-----------cCC------eEEEEecCCCCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-----------SLA------EVVEIGLDDNGL 215 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-----------~G~------~vv~v~~~~~~~ 215 (625)
+..++.+.. .+.++++ |++.+..|+.....+.. .|+ .+..++.
T Consensus 126 ~~~al~~ar-------------~~~~~~~--vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 185 (453)
T 2cy8_A 126 TLLALRVAR-------------AFTGRRM--ILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP----- 185 (453)
T ss_dssp HHHHHHHHH-------------HHHCCCE--EEEECC----------------------------CGGGEEEECT-----
T ss_pred HHHHHHHHH-------------HhhCCCE--EEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----
Confidence 666655410 0112343 55554545433222111 133 2344443
Q ss_pred CCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcccc----CCCCCCC
Q 043646 216 LDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKIN----LRSRNID 287 (625)
Q Consensus 216 ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id----~~~~~~~ 287 (625)
.|+++|++++++. .+++++|+++.++|+||.+.| +++|.++|++||+++|+|++++ +. ..+ +...+.
T Consensus 186 ~d~~~le~~l~~~--~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~- 260 (453)
T 2cy8_A 186 DDIEGMREVFANH--GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDV- 260 (453)
T ss_dssp TCHHHHHHHHHHH--GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTC-
T ss_pred CCHHHHHHHHHhc--CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCC-
Confidence 3899999999742 136788888877788999888 9999999999999999999987 32 111 111111
Q ss_pred CCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH-HHHHHHH
Q 043646 288 GYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI-VQMIRAA 366 (625)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~-~~~~~aa 366 (625)
.+|+++ ++|+++++..+|++++++++ .+.+.+...+... .....+.+++ .....++
T Consensus 261 ~~di~s--~sK~l~~G~~~G~v~~~~~~--~~~l~~~~~~~~~-------------------~~~t~~~n~~~~aa~~aa 317 (453)
T 2cy8_A 261 QPDLTC--LAKASAGGLPGGILGGREDV--MGVLSRGSDRKVL-------------------HQGTFTGNPITAAAAIAA 317 (453)
T ss_dssp CCSEEE--EEGGGGTTSSCEEEEECHHH--HTTSSSCC----------------------------CCCCHHHHHHHHHH
T ss_pred CCcEEE--EChhhhCCcceEEEechHHH--HHHhccccCCCce-------------------eCCCCCCCHHHHHHHHHH
Confidence 468765 45999864468999999887 3343321000000 0000111222 2222334
Q ss_pred HHH-HHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEecc-----CCCCCCccccccCC-
Q 043646 367 LAF-WVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYS-----TTNSSPENMKIERN- 435 (625)
Q Consensus 367 l~~-~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~-----~~~~~~~~~~~~~~- 435 (625)
++. . .+.+.++.+.+.+++.+.|.++ +.+....+ .+.++.+.+.. ..... .......
T Consensus 318 l~~~~------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~--~~~~~~~~ 385 (453)
T 2cy8_A 318 IDTIL------EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYG----RFSGFHLMPGLPPNTTDTGSI--TRAEVARP 385 (453)
T ss_dssp HHHHH------HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEC----CTTEEEEEETSCTTCCCCHHH--HTTCSCCC
T ss_pred HHHHh------hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE----eeeEEEEEEeccccccccccc--cccccccc
Confidence 443 2 2345566777777777777543 32222222 34555554432 00000 0000000
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
......++.+.|.+ +||.++++ +.+|++ ..++++|+++++++
T Consensus 386 ~~~~~~~l~~~l~~-~Gv~v~~~-----------------------------------~~~~l~--~~~t~~~i~~~l~~ 427 (453)
T 2cy8_A 386 DVKMIAAMRMALIL-EGVDIGGR-----------------------------------GSVFLS--AQHEREHVEHLVTT 427 (453)
T ss_dssp CHHHHHHHHHHHHH-TTEECBTT-----------------------------------TEEECC--TTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-CCeEEeCC-----------------------------------CCEEee--ccCCHHHHHHHHHH
Confidence 00113567888865 69998421 235654 67899999999999
Q ss_pred HHHHHHhh
Q 043646 516 LEFIAAYG 523 (625)
Q Consensus 516 L~~~~~~~ 523 (625)
|++++.+.
T Consensus 428 l~~~l~~~ 435 (453)
T 2cy8_A 428 FDRVLDRL 435 (453)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=170.30 Aligned_cols=326 Identities=13% Similarity=0.064 Sum_probs=193.5
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH-HHHhcccccchhhhhhhhccCCC-CceEEEEcCCCCchhHHHHHHcC
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRL-QEVMGITVPSIMRDKLITSLRDE-ERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l-~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.+..||+.+ |.+.....+++ +|+|.++..+ +.++. . -+|+ + .|+++...|.|+.+++...|
T Consensus 121 l~ld~L~~~-G~~~~~~~flV-nGsTgg~lamilaa~r--------~-----~rpg~d--~VIvpRn~HKSv~kAliL~G 183 (501)
T 3hl2_A 121 LVLDIIKLA-GVHTVANCFVV-PMATGMSLTLCFLTLR--------H-----KRPKAK--YIIWPRIDQKSCFKSMITAG 183 (501)
T ss_dssp HHHHHHHHT-TCTTCCEEEEE-SSCHHHHHHHHHHHHH--------H-----HCTTCC--EEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHc-CCCCCCcEEEE-CcHHHHHHHHHHHHcC--------c-----ccCCCC--EEEEecchHHHHHHHHHHcC
Confidence 355666666 98865456777 7788644444 33331 0 0234 5 48899999999999999999
Q ss_pred CeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecc-cCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcc
Q 043646 203 AEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSAC-SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVK 278 (625)
Q Consensus 203 ~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~-~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~ 278 (625)
+++++|+. ++...+|+++++++|+++ +....++++.++ ++-.|.+.|+++|+++||+||++++||+||++-...
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~--ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~ 261 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQEL--GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSK 261 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHH--CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhc--CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhh
Confidence 99999976 334579999999999864 123444444444 343557799999999999999999999998874422
Q ss_pred cc---CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 279 IN---LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 279 id---~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
.. ...+..+.+|+++.|.||++..|.|.|+++++++-. ++.+...++|. ..+
T Consensus 262 ~~~lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~-l~~~~~~yPGr------------------------~S~ 316 (501)
T 3hl2_A 262 CMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSF-IQEISKMYPGR------------------------ASA 316 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHH-HHHHHHTSCSC------------------------BCS
T ss_pred hhhhHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHH-HHHHHHhCCCC------------------------CCC
Confidence 21 011111139999999999999898756665655421 11111111110 112
Q ss_pred ChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCccccc
Q 043646 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432 (625)
Q Consensus 356 t~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~ 432 (625)
.| ...+..+.+.+ ...|+..+.++..++++++.++|+++. |-+++... ..+|-.-.......
T Consensus 317 Sp-sldl~~tLL~l---Gr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~---~n~is~a~tl~~~~-------- 381 (501)
T 3hl2_A 317 SP-SLDVLITLLSL---GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTP---HNPISLAMTLKTLD-------- 381 (501)
T ss_dssp HH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCT---TCSSEEEEECTTSC--------
T ss_pred cH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCC---CCceeEEEeccccc--------
Confidence 22 22222222333 356678888999999999999998753 33444322 23332222222110
Q ss_pred cCCCCCChHHHHHHhhhhcCee---e-ecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 433 ERNKPLHGPFVATLFNDLFGIQ---A-RGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 433 ~~~~~l~~~~v~~~L~~~~gI~---v-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....-...++-.+|..+ +|- | ..|..- .-.++.+.+.+. . .+.-+..++-++...-++.+|
T Consensus 382 -~~~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~-~i~g~~f~~~g~---------h---~~~~~~~yl~~a~aiG~~~~~ 446 (501)
T 3hl2_A 382 -EHRDKAVTQLGSMLFTR-QVSGARVVPLGSMQ-TVSGYTFRGFMS---------H---TNNYPCAYLNAASAIGMKMQD 446 (501)
T ss_dssp -TTTSCHHHHHHHHHHHT-TCCSCEEECTTCCE-EETTEEESSTTT---------T---SSCCSSCEEEEECCTTCCHHH
T ss_pred -ccccccHHHHHHHHHhc-CCCcceeecCCCce-EECCeeecCccc---------C---CCCCCchHHHHHHHcCCCHHH
Confidence 00111234556666442 332 1 111100 001111211110 0 012235788999888899999
Q ss_pred HHHHHHHHHHHHHhhh
Q 043646 509 FEFILAALEFIAAYGH 524 (625)
Q Consensus 509 id~ll~aL~~~~~~~~ 524 (625)
||.+++.|++++.+..
T Consensus 447 v~~~~~~l~~~~~~~~ 462 (501)
T 3hl2_A 447 VDLFIKRLDRCLKAVR 462 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.1e-16 Score=162.79 Aligned_cols=353 Identities=16% Similarity=0.171 Sum_probs=207.2
Q ss_pred cchHHHHHHHHHhhCCCC--CCCCCCcchhhHHHH-HHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHhc
Q 043646 88 RSLRYIEDYIINNVLPFY--GNTHTSDSYVGQRMT-KMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVMG 161 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~~~-~~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l~ 161 (625)
..++.|++++-..+.+.| +.|+.- |..|.... ++..-++++.+++||++... +|--- ||+.|++......
T Consensus 65 ~~S~aV~~a~gS~ltnKYaEGyPg~R-yYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~-SGs~AN~avy~Al-- 140 (490)
T 3ou5_A 65 FCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTAL-- 140 (490)
T ss_dssp CCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHH--
T ss_pred cCCHHHHHHhcCcccccccCCCCCcc-ccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcC-CHHHHHHHHHHHH--
Confidence 456788998877776655 345442 33454444 45556778899999998763 23343 7999887666543
Q ss_pred ccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--------HHHHcCC--eEEEEecCC-CCCCCHHHHHHHHHHhhh
Q 043646 162 ITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--------SWRQSLA--EVVEIGLDD-NGLLDIEALRSQLELYKA 230 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--------~~~~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~~ 230 (625)
++|||+ |+..+..|...+. .....|. +++.+++++ ++.+|.+++++...+
T Consensus 141 --------------l~PGD~--ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~--- 201 (490)
T 3ou5_A 141 --------------LQPHDR--IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL--- 201 (490)
T ss_dssp --------------CC-CCC--EECBC----------------------------CBCEETTTTEECHHHHHHHHHH---
T ss_pred --------------cCCCCE--EEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh---
Confidence 589997 8887766554431 1122233 455556664 688999999998886
Q ss_pred CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEE
Q 043646 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILL 310 (625)
Q Consensus 231 ~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~ 310 (625)
.+|++|++-.... -...|.+++.++|++.|+++++|.||-.|.+.-.+.+-....+|+++++.||.|.||.| |+++
T Consensus 202 -~kPklIi~G~SaY--~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrG-G~Il 277 (490)
T 3ou5_A 202 -FRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIF 277 (490)
T ss_dssp -HCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSC-EEEE
T ss_pred -cCCCeEEECCccC--ccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCc-eEEE
Confidence 4899988865433 34679999999999999999999998765443222221123689999999999999997 9999
Q ss_pred EeccccccCCCCCcccCCceEEeeccccccccccccchhhhh---cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 043646 311 ISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE---NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY 387 (625)
Q Consensus 311 v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~---~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (625)
++++.... .+.. +..+. ..+.+.+.... ..|.|-...+++.|+++............+++..+
T Consensus 278 ~~~~~~~~---~~k~--~~~~~---------~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~N 343 (490)
T 3ou5_A 278 YRKGVKAV---DPKT--GREIP---------YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKN 343 (490)
T ss_dssp EECSEEEE---CC----CCEEE---------CCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred eccccccc---cccc--cchhH---------HHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 98865210 0100 00000 00111111111 12345444544444444311122244566677777
Q ss_pred HHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhH
Q 043646 388 IESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGH 467 (625)
Q Consensus 388 ~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~ 467 (625)
++.|.+.|.+. |++++..- .....+.+.+.+ .++++..+.+.| ++.||.+.--..+. -.
T Consensus 344 AkaLA~~L~~~-G~~vvsGg--TdnHlvLvDl~~--------------~g~tG~~ae~~L-e~agItvNkN~iP~---D~ 402 (490)
T 3ou5_A 344 ARAMADALLER-GYSLVSGG--TDNHLVLVDLRP--------------KGLDGARAERVL-ELVSITANKNTCPG---DR 402 (490)
T ss_dssp HHHHHHHHHHT-TCEEGGGS--CSSSEEEEECGG--------------GTCCHHHHHHHH-HHTTEECEEECCTT---CC
T ss_pred HHHHHHHHHhC-CCeeecCC--CCceEEEEeccc--------------cCCCHHHHHHHH-HHcCcEECCCCCCC---CC
Confidence 88888888775 89988532 122333333332 356677777777 66899876322221 00
Q ss_pred hhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhh
Q 043646 468 TLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 468 ~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~~ 523 (625)
. ...+..|||..+ .-..++|++.+.+.|.+++..+
T Consensus 403 s---------------------p~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~~ 441 (490)
T 3ou5_A 403 S---------------------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp C---------------------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred C---------------------CCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 0 012567999975 3457999999999999987654
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=167.68 Aligned_cols=333 Identities=13% Similarity=0.031 Sum_probs=186.2
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
.|+|..+. +..++.|.+++.+.+... .+.. + ..+...+++++++++++ ..+ +|+|+++|+. +
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~-~-----~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~e-a 120 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERG---LTFG-A-----PSPLEVALAKKVKRAYP-FVD-LVRFVNSGTE-A 120 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---SCCS-S-----CCHHHHHHHHHHHHHCT-TCC-EEEEESSHHH-H
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhC---CCCC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCCHHH-H
Confidence 47777643 456789999999888541 1111 1 23456778899999986 444 8999855555 4
Q ss_pred HHHHHHH-hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-------------cC------CeEEEEecCC
Q 043646 153 IKRLQEV-MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-------------SL------AEVVEIGLDD 212 (625)
Q Consensus 153 l~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-------------~G------~~vv~v~~~~ 212 (625)
+..++.+ +. +.++++ +|+..+..|......+.. .| .+++.++.
T Consensus 121 ~~~al~~ar~--------------~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-- 183 (424)
T 2e7u_A 121 TMSALRLARG--------------YTGRPY-IVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-- 183 (424)
T ss_dssp HHHHHHHHHH--------------HHCCCE-EEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT--
T ss_pred HHHHHHHHHH--------------hhCCCE-EEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC--
Confidence 5555443 11 122343 444444444433211111 13 23555553
Q ss_pred CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCcc---ccCCCCC
Q 043646 213 NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVK---INLRSRN 285 (625)
Q Consensus 213 ~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~---id~~~~~ 285 (625)
.|+++|++++++. .+++++|+++..+++||.+.| +++|.++ ++||+++|+|++++ +... ......+
T Consensus 184 ---~d~~~le~~l~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~ 256 (424)
T 2e7u_A 184 ---NDPEGLREVLKRR--GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLG 256 (424)
T ss_dssp ---TCHHHHHHHHHHH--GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHT
T ss_pred ---CCHHHHHHHHHhC--CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhC
Confidence 3899999999742 135677777766666999888 9999999 99999999999988 2211 0011111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHH
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIR 364 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~ 364 (625)
. .+|++ +++|++++...+|++++++++ .+.+.+.. ... .... .+.+.......
T Consensus 257 ~-~~di~--s~sK~l~~G~~~G~~~~~~~~--~~~~~~~~--~~~-------------------~~~t~~~~~~~~aaa~ 310 (424)
T 2e7u_A 257 L-KPDLV--TLGKILGGGLPAAAYAGRREI--MEKVAPLG--PVY-------------------QAGTLSGNPLAMAAGL 310 (424)
T ss_dssp C-CCSEE--EECGGGGTTSSCEEEEECHHH--HTTBTTTS--SBC-------------------CCCTTCSCHHHHHHHH
T ss_pred C-Ccchh--hhhhhhhCCcceEEEEEcHHH--HhhhcccC--Ccc-------------------cCCCCCCCHHHHHHHH
Confidence 1 46876 556999864457999999887 33333210 000 0000 11222222233
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh
Q 043646 365 AALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG 440 (625)
Q Consensus 365 aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~ 440 (625)
++++.+ +. .+.+.++.+++.+++++.|.++ +.+..+.+ .+.++.+.+.......+.. .........
T Consensus 311 aal~~~--~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~--~~~~~~~~~ 380 (424)
T 2e7u_A 311 ATLELL--EE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR----VGSMITVFFTEGPVVTFQD--ARRTDTELF 380 (424)
T ss_dssp HHHHHH--HH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEEEESSSSCCCSHHH--HTTSCHHHH
T ss_pred HHHHHH--Hh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe----eceEEEEEEeCCCCcchhh--hcccCHHHH
Confidence 445544 22 1456677777788888877653 22111111 2345444432200000000 000000113
Q ss_pred HHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 441 PFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 441 ~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
..+.+.|.+ +||.+++|. ...+|++ ..++++|+++++++|+++
T Consensus 381 ~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 381 KRFFHGLLD-RGIYWPPSN---------------------------------FEAAFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HHHHHHHHT-TTEECCSSS---------------------------------SSCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEeccC---------------------------------CCceEee--ccCCHHHHHHHHHHHHHh
Confidence 467787865 799998642 1235655 568999999999999875
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=162.62 Aligned_cols=340 Identities=12% Similarity=0.042 Sum_probs=197.1
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHh-CCCCC-Cc--EEEeCChHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCL-GGGQA-DA--IIFCGAGTTAAIK 154 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~-g~~~~-~~--vift~sGttaal~ 154 (625)
+|-|..+..+.++.|.+|....+..- ..| .|....+..+ +++.+++++ |.... +. .+-| .|.|.++.
T Consensus 53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~--~~~--~Y~p~~G~p~----lr~aia~~~~g~~~~~~~~~~~qt-~ggtga~~ 123 (420)
T 4h51_A 53 AYRDEQGRPYPLRVVRKAEQLLLDMN--LDY--EYLPISGYQP----FIDEAVKIIYGNTVELENLVAVQT-LSGTGAVS 123 (420)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHHTT--CCC--CCCCTTCCHH----HHHHHHHHHHC---CGGGEEEEEE-EHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhcCC--CCC--CCCCcCChHH----HHHHHHHHhcCCCccccccceeee-cCchHHHH
Confidence 58888888888899999876555321 111 1222223333 444455543 33211 12 2334 56666666
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCe-EEEEecC--CCCCCCHHHHHHHHHHhhhC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAE-VVEIGLD--DNGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~--~~~~ld~~~L~~~l~~~~~~ 231 (625)
..+..+... .++|||+ |+++.+.|+.+...++..|++ |...+.. .+..+|.+.+.+.+.. ..
T Consensus 124 ~a~~~l~~~-----------~~~pgd~--V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~--~~ 188 (420)
T 4h51_A 124 LGAKLLTRV-----------FDAETTP--IYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILA--AP 188 (420)
T ss_dssp HHHHHHTTT-----------SCTTTSC--EEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHH--SC
T ss_pred HHHHHHHHh-----------cCCCCCE--EEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhc--cC
Confidence 555544211 1468887 999999999998889999987 4444432 2457899999888873 23
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC-CCccccCCCC------CCCCCcEEEEcCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG-PYVKINLRSR------NIDGYDAIFLATHKFLG 301 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~-g~~~id~~~~------~~~~~D~v~~S~hK~lg 301 (625)
+++++++.+.|+||||...+ +++|+++|+++++++++|+++.. .+...+.... .....-+++.|++|.|+
T Consensus 189 ~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 189 DGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp SSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 57788899999999999966 67899999999999999999542 2211111000 00122366779999987
Q ss_pred CCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHH---HHh--hc
Q 043646 302 GPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFW---VKE--YI 375 (625)
Q Consensus 302 gp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~---~~~--~~ 375 (625)
.++ .+|++++...... ..... ...... ..+.....++..+...++..+. +.. ..
T Consensus 269 ~~G~RvG~~~~~~~~~~--~~~~~-----------------~~~l~~-~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 269 LYSERAGTLSLLLKDKT--KRADV-----------------KSVMDS-LIREEYTCPPAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp CGGGCEEEEEEECSCHH--HHHHH-----------------HHHHHH-HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cccCceEEEEecccCHH--HHHHH-----------------HHHHHH-hhhcccCcchHHHHHHHHHHhcCHHHHHHHHH
Confidence 554 3899988765411 00000 000000 1112223333333211111110 000 11
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCC--c-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcC
Q 043646 376 GYEVIKKQEDVYIESALGRILPNQ--N-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFG 452 (625)
Q Consensus 376 g~~~i~~~~~~l~~~l~~~L~~l~--g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~g 452 (625)
-.+.++++.+.+++.+.+.|.++. + +..+.+ +.+.|+|.- ++. +.+++| +++|
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~----q~GmF~~~g------------------ls~-e~v~~L-~e~~ 384 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQTPGSWEHVIN----QIGMFSFLG------------------LSK-AQCEYC-QNHN 384 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH----CCSSEEECC------------------CCH-HHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecC----CCceEEecC------------------cCH-HHHHHH-HhCC
Confidence 245667778888888888887641 1 111111 345565532 333 445667 4589
Q ss_pred eeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 453 IQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 453 I~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
|.+.+| | |||+. ..+++.|++++++|.+++++..
T Consensus 385 Vy~~~~-----------------------------------g--Ris~A-gl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 385 IFITVS-----------------------------------G--RANMA-GLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp EECCTT-----------------------------------C--EEEGG-GCCHHHHHHHHHHHHHHHC---
T ss_pred EEEcCC-----------------------------------C--EEEec-cCCHHHHHHHHHHHHHHHHHhh
Confidence 987521 3 99985 3588999999999999987654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-14 Score=152.82 Aligned_cols=338 Identities=16% Similarity=0.137 Sum_probs=196.0
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |-..+.|.+++.+++.... +...+ .....++.+.|++.+.. . +.|.|++||+++
T Consensus 87 ~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~---~~~~~------~~~~~~lae~l~~~~p~-~-~~v~f~~SGsEA 155 (454)
T 4ao9_A 87 HRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI---NLTGH------NLLEGRLARLICERFPQ-I-EQLRFTNSGTEA 155 (454)
T ss_dssp CEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS---CCCSE------ESSHHHHHHHHHHHSTT-C-SEEEEESSHHHH
T ss_pred CEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC---CccCC------cHHHHHHHHHHHHhCCC-C-CEEEEeCchHHH
Confidence 458886543 4467899999998885421 11111 11234567788888753 2 379999899998
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-----cCCeEEEEecCCCCCCCHHHHHHHHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-----SLAEVVEIGLDDNGLLDIEALRSQLE 226 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-----~G~~vv~v~~~~~~~ld~~~L~~~l~ 226 (625)
+...+-.++.. .|.+.+|.....+|......... .......+|.+ |++.+++.++
T Consensus 156 ~e~AiklAr~~---------------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~ 215 (454)
T 4ao9_A 156 NLMALTAALHF---------------TGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIE 215 (454)
T ss_dssp HHHHHHHHHHH---------------HTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhc---------------ccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHh
Confidence 66665444421 12222344444455433211111 11234444443 8999999998
Q ss_pred HhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCccccC--CCCCCCCCcEEEEcCCCCC
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKINL--RSRNIDGYDAIFLATHKFL 300 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~id~--~~~~~~~~D~v~~S~hK~l 300 (625)
++ .+++.+|++..+....|.+.| +++|.++|++||+++|+|+++. |-..... ...+. .+|+++++ |.+
T Consensus 216 ~~--~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv-~PDi~t~g--K~l 289 (454)
T 4ao9_A 216 RH--GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGI-RSDLTTLG--KYI 289 (454)
T ss_dssp HT--GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTC-CCSEEEEE--GGG
T ss_pred hc--CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCC-CCcEEEec--ccc
Confidence 42 346889999999999999988 8999999999999999999987 2111000 00111 46998887 888
Q ss_pred CCCCCceEEEEeccccccCCCCCcc---cCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCH
Q 043646 301 GGPGTPGILLISKALYQLGSSPPST---CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGY 377 (625)
Q Consensus 301 ggp~g~G~l~v~~~~~~l~~~~p~~---~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~ 377 (625)
|+...+|++++++++. +.+.|.. ..++| ..|.|-.++...++++.+ -.
T Consensus 290 ggG~Piga~~~~~ei~--~~~~~~~~~~~h~~T----------------------~~gnPla~AAala~L~~l-----~~ 340 (454)
T 4ao9_A 290 GGGMSFGAFGGRADVM--ALFDPRTGPLAHSGT----------------------FNNNVMTMAAGYAGLTKL-----FT 340 (454)
T ss_dssp GTTSSCEEEEECHHHH--GGGCTTTCSCCCCCT----------------------TTTCHHHHHHHHHHHHHT-----SC
T ss_pred CCCCcceeeeeHHHHH--HHHhhccCCccccCC----------------------CCCCHHHHHHHHHHHHHH-----hc
Confidence 7666689999999883 3332211 01111 012333333333444433 22
Q ss_pred HHHHHHHHHHHHHHHHhhCCC----Cc-EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCCh---HHHHHHhhh
Q 043646 378 EVIKKQEDVYIESALGRILPN----QN-IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHG---PFVATLFND 449 (625)
Q Consensus 378 ~~i~~~~~~l~~~l~~~L~~l----~g-v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~---~~v~~~L~~ 449 (625)
+.+.++..++.+++++.|+++ +- .++.+ .+.++.+....+.... .......+. ..+...|++
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg-----~G~m~gi~f~~~~~~~-----~~~~~~~d~~~~~~~~~~ll~ 410 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEGVAMQFTG-----IGSLMNAHFVQGDVRS-----SEDLAAVDGRLRQLLFFHLLN 410 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE-----ETTEEEEESCCSCCCS-----GGGGTTCCHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee-----eceEEEEEEecCCCCC-----HHHHHhhhHHHHHHHHHHHHH
Confidence 455666777777777776543 21 12221 2344554443221000 000011111 234445555
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccC
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPL 529 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~ 529 (625)
.||.+++ .+.+.++.. +|++|||+++++|++++.+...++|.
T Consensus 411 -~Gv~~~p-----------------------------------~~~~~~s~~--~T~~dId~~l~al~~~l~~~~a~lPr 452 (454)
T 4ao9_A 411 -EDIYSSP-----------------------------------RGFVVLSLP--LTDADIDRYVAAIGSFIGGHGALLPR 452 (454)
T ss_dssp -TTEECCT-----------------------------------TCEEECCTT--CCHHHHHHHHHHHHHHHHHSGGGSCB
T ss_pred -CCEEEcC-----------------------------------CCCEEEeCC--CCHHHHHHHHHHHHHHHHhccccCCC
Confidence 5988762 144555554 69999999999999999988777764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-13 Score=145.49 Aligned_cols=373 Identities=16% Similarity=0.088 Sum_probs=209.6
Q ss_pred HHHHHHHHHhhcCC-------------CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 52 EEKLAWLRSQIIGN-------------DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 52 ~~~~~~lr~~~~~~-------------~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
.+.+++.++.+++. +..+.+..| .-|+|..+ .|-..+.|.+++.+++.... |...
T Consensus 28 ~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---~~~~ 101 (456)
T 4atq_A 28 QALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDG---NSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT---HTCF 101 (456)
T ss_dssp HHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTS---CEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS---CCTT
T ss_pred HHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCC---CEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc---Cccc
Confidence 56666666655432 233333334 35888643 45567899999988875432 1110
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
.. ...+...++.+.|.+++..+..+.++|+.||++|+-.++-.++. -.+.+.+|.....+|.
T Consensus 102 ~~---~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~---------------~t~r~~ii~~~~~yHG 163 (456)
T 4atq_A 102 MV---TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARL---------------ATGRDAVVAFDHAYHG 163 (456)
T ss_dssp TT---SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH---------------HHCCCEEEEETTCCCC
T ss_pred Cc---cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhh---------------hhcCCeEEEEecccCC
Confidence 00 01223445677888888654434788988888884444433321 0122223444455555
Q ss_pred hhHHHHHHcC-------------CeEEEEecCC------CCCCCHHHHHHHHHH---hhhCCCCeEEEEecccCcccccc
Q 043646 193 SNLLSWRQSL-------------AEVVEIGLDD------NGLLDIEALRSQLEL---YKAAKRPMLGSFSACSNVTGIYS 250 (625)
Q Consensus 193 s~~~~~~~~G-------------~~vv~v~~~~------~~~ld~~~L~~~l~~---~~~~~~~~lv~~~~~~n~TG~~~ 250 (625)
....++...+ -.+..+|... ....+.+.+++.++. ....+++.+|++..+....|.+.
T Consensus 164 ~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 164 RTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp SSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 5543433221 2456666532 112334444444432 11224678999999998889886
Q ss_pred C----HHHHHHHHHHcCCEEEEeccCcC-CCcc--ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCC
Q 043646 251 D----TRSIARLLHQYGGFACFDFAASG-PYVK--INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPP 323 (625)
Q Consensus 251 ~----l~~I~~la~~~g~~vivD~A~~~-g~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p 323 (625)
| +++|.++|++||+++|+|+++.. |-.. .....++. .+|+++++ |.+|+...+|++++++++ .+.+.+
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv-~PDivt~g--K~lggg~P~~av~~~~~i--~~~~~~ 318 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV-VPDIITMA--KGIAGGLPLSAITGRADL--LDAVHP 318 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC-CCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSCT
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC-CCchhhhh--hcccCcCCceeeEecHHH--Hhcccc
Confidence 6 89999999999999999999774 2211 11111112 57999987 888766668999999998 344444
Q ss_pred cccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC----C
Q 043646 324 STCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN----Q 399 (625)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l----~ 399 (625)
...+ +| ..|.|-.++...+.++.+. .. .+.++.+.+.+++.+.|+++ +
T Consensus 319 ~~~~-~T----------------------f~gnpla~aaala~L~~i~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~ 370 (456)
T 4atq_A 319 GGLG-GT----------------------YGGNPVACAAALAAIDTME--QH---DLNGRARHIEELALGKLRELAAELS 370 (456)
T ss_dssp TSSC-CS----------------------SSSCHHHHHHHHHHHHHHH--HT---THHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCC-CC----------------------CCCChHHHHhhHHHHHHHh--hc---cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3221 11 1244444444456666652 22 34455555556665555432 1
Q ss_pred c--EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 400 N--IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 400 g--v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
. ..+++.. ..++-++.+.+..+.... ...--...+.+.+.+ +|+.+.+. + +
T Consensus 371 ~~~~~~v~~V-RG~Gl~~giel~~~~~~~--------~~~~~~~~v~~~~~~-~Gvl~~~~---g-~------------- 423 (456)
T 4atq_A 371 AGGGSVVGDI-RGRGAMLAIELVQPGSKE--------PNAELTKAVAAACLK-EGVIILTC---G-T------------- 423 (456)
T ss_dssp -----CEEEE-EEETTEEEEEEBCTTSCC--------BCHHHHHHHHHHHHH-TTEECEEE---C-T-------------
T ss_pred cccCCceEEe-eecceEEEEEEecCCCCC--------cCHHHHHHHHHHHHH-CCCEEEec---C-C-------------
Confidence 1 1111110 113345555443321100 000002356666755 69988632 1 1
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..+.|||.+++..|++|+|+++++|+++++.
T Consensus 424 --------------~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 424 --------------YGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp --------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1378999999999999999999999998753
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-16 Score=173.48 Aligned_cols=344 Identities=12% Similarity=0.003 Sum_probs=190.4
Q ss_pred EeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 043646 79 TYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAA 152 (625)
Q Consensus 79 ~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaa 152 (625)
-|+|..++ |..++.|.+++.+++... .+. ....+...+++++|+++++ ..+ .++|+++|+.+.
T Consensus 101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~---~~~------~~~~~~~~~Lae~L~~~~p-~~~-~v~~~nSGseA~ 169 (465)
T 2yky_A 101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVG---LNL------STQTENEALFAEAVCDRFP-SID-LVRFTNSGTEAN 169 (465)
Confidence 47776442 335788999998877531 010 1234567788899999985 333 688886777775
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch-hHHHH---HHcCC--eEEEEecCCCCCCCHHHHHHHHH
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-NLLSW---RQSLA--EVVEIGLDDNGLLDIEALRSQLE 226 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~---~~~G~--~vv~v~~~~~~~ld~~~L~~~l~ 226 (625)
...+-.++. ...+++ |++....|+. ....+ ...|+ .++.++. -|+++|+++++
T Consensus 170 ~~Aik~ar~--------------~tgr~~--ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~ 228 (465)
T 2yky_A 170 LMALATATA--------------ITGRKT--VLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLK 228 (465)
Confidence 444322221 122343 5555544443 33222 11233 2333332 37889999887
Q ss_pred HhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCccc--cCCCCCCCCCcEEEEcCCCCC
Q 043646 227 LYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKI--NLRSRNIDGYDAIFLATHKFL 300 (625)
Q Consensus 227 ~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~i--d~~~~~~~~~D~v~~S~hK~l 300 (625)
+. .+++++|+++.+.+++|.+.| +++|.++|++||+++|+|++++ +.... .....+. .+|++ ++.|++
T Consensus 229 ~~--~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv-~pDi~--t~sK~l 302 (465)
T 2yky_A 229 RH--GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGI-SADLT--TLGKYI 302 (465)
Confidence 42 247889998887778998877 9999999999999999999988 42110 0111111 35765 456999
Q ss_pred CCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhc-CCChhHHHHHHHHHHHHHHhhcCHHH
Q 043646 301 GGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEEREN-GGTPQIVQMIRAALAFWVKEYIGYEV 379 (625)
Q Consensus 301 ggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~~aal~~~~~~~~g~~~ 379 (625)
|+...+|++++++++ ++.+.+...|... .... .+.|.......++++.+ + .+.
T Consensus 303 g~G~piG~v~~~~~i--~~~l~~~~~g~~~-------------------~~~T~~~npla~aAa~aaL~~l--~---~~~ 356 (465)
T 2yky_A 303 GGGMSFGAFGGRRDL--MERFDPARDGAFA-------------------HAGTFNNNILTMSAGHAALTQI--Y---TRQ 356 (465)
Confidence 864457999999888 3344331001000 0000 12222222223444443 1 134
Q ss_pred HHHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecC
Q 043646 380 IKKQEDVYIESALGRILPNQ-NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGG 458 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~-gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G 458 (625)
+.++..++.++++++|.++. ...+.... ...+.++.+.+..+...++... .....-....+.+.|.+ .||.+.++
T Consensus 357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~g~G~~~~i~~~~~~~~~~~~~--~~~d~~~~~~~~~~ll~-~GV~v~p~ 432 (465)
T 2yky_A 357 AASDLSASGDRFRANLNRIAVENQAPLQF-TGLGSLGTIHFSRAPIRSAGDV--RAADQQLKELFFFHMLR-KGIYLAPR 432 (465)
Confidence 66777777888888887641 11121111 1234455554432000000000 00000012356666755 69988753
Q ss_pred CCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcc
Q 043646 459 CACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFL 527 (625)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~ 527 (625)
.+ + . +++.+|++|+++++++|++++.+...++
T Consensus 433 ~~---------------------------------~-~---~s~~~t~edid~~l~~l~~~l~~~~~~~ 464 (465)
T 2yky_A 433 GM---------------------------------Y-A---LSLEIADAGRDAFAEALADFIGEQRALL 464 (465)
Confidence 21 1 1 4456899999999999999887754443
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-11 Score=133.76 Aligned_cols=361 Identities=14% Similarity=0.087 Sum_probs=204.1
Q ss_pred CCCccccCCCCCCceEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC
Q 043646 64 GNDVEFDYSFGKRRLTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG 137 (625)
Q Consensus 64 ~~~~~~~~p~g~~~~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~ 137 (625)
+.+..+.+..|+ -|+|..++ |-..+.|.+++.+++.+.... +.. .+ ...+...++.++|.++...+
T Consensus 56 g~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~-~~~---~~-~~~~~~~~lAe~L~~~~p~~ 127 (473)
T 4e3q_A 56 GEGPYIVDVNGR---RYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGY-HAF---FG-RMSDQTVMLSEKLVEVSPFD 127 (473)
T ss_dssp EETTEEEETTCC---EEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCC-CCC---TT-EEEHHHHHHHHHHHHHSSCS
T ss_pred eecCEEEeCCCC---EEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccc-ccc---cc-ccCHHHHHHHHHHHhhCCCC
Confidence 445666666664 48996543 456789999998888543111 110 00 01233445778888888765
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-----------eEE
Q 043646 138 QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-----------EVV 206 (625)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv 206 (625)
-+ .|.|+.||++|+-.++-.++... +. .-.++...+|.....+|.....++...|- .+.
T Consensus 128 ~~-~v~f~~sGsEA~e~AiKlAr~~~-----~~----~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~ 197 (473)
T 4e3q_A 128 SG-RVFYTNSGSEANDTMVKMLWFLH-----AA----EGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFV 197 (473)
T ss_dssp SC-EEEEESSHHHHHHHHHHHHHHHH-----HH----TTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEE
T ss_pred cc-EEEEeCchHHHHHHHHHHHHHHH-----Hh----cCCCCcceEEEeeceECCCccccccccccccccccCCCCCccc
Confidence 55 89999889888433332222100 00 01234433444455566555544433221 234
Q ss_pred EEecCC------CCCC-------CHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEe
Q 043646 207 EIGLDD------NGLL-------DIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (625)
Q Consensus 207 ~v~~~~------~~~l-------d~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD 269 (625)
.++... .+.. ..+++++.+.+ ...+.+.+|++..+....|.+.| +++|.++|++||+++|+|
T Consensus 198 ~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~D 276 (473)
T 4e3q_A 198 HLTCPHYWRYGEEGETEEQFVARLARELEETIQR-EGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISD 276 (473)
T ss_dssp EECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH-HCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCcccccccccchhhHHHHHHHHHHHHHHHh-hCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEecc
Confidence 444321 1111 12345555553 12235788999999988898866 899999999999999999
Q ss_pred ccCcCC-Ccc--ccCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCC-------CCcccCCceEEeecccc
Q 043646 270 FAASGP-YVK--INLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSS-------PPSTCGGGTVNYVNAFD 338 (625)
Q Consensus 270 ~A~~~g-~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~-------~p~~~ggg~v~~~~~~~ 338 (625)
+++... -.. .....++. .+|+++++ |.+++. ..+|++++++++.+ .+ .+... ++|
T Consensus 277 EV~tGfGRtG~~fa~e~~gv-~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~--~~~~~~~~~~~~~h-g~T-------- 342 (473)
T 4e3q_A 277 EVICGFGRTGNTWGCVTYDF-TPDAIISS--KNLTAGFFPMGAVILGPELSK--RLETAIEAIEEFPH-GFT-------- 342 (473)
T ss_dssp CTTTSSSTTSSSCHHHHTTC-CCSEEEEC--GGGGTTSSCCEEEEECHHHHH--HHHHHHHHHSCCCC-CCT--------
T ss_pred CccccCCcccchhHHHhcCC-CCChHHhc--ccccCCCCCcccccccHHHHH--Hhcccccccccccc-CCC--------
Confidence 997642 111 00111111 57999887 988654 45799999988732 11 11111 111
Q ss_pred ccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC---CCCcEEEeCCCCCCCcceE
Q 043646 339 EKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRIL---PNQNIQVLGNTSVKRQAIL 415 (625)
Q Consensus 339 ~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~---~l~gv~v~~~~~~~~~~i~ 415 (625)
..|.|-.++...+.++.+. .. .+.++.+.+.+++.+.|+ +.|.+.-+. .++-++
T Consensus 343 --------------~~Gnpla~Aaala~L~~i~--~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vR----G~Gl~~ 399 (473)
T 4e3q_A 343 --------------ASGHPVGCAIALKAIDVVM--NE---GLAENVRRLAPRFEERLKHIAERPNIGEYR----GIGFMW 399 (473)
T ss_dssp --------------TTTCHHHHHHHHHHHHHHH--HS---SHHHHHHHHHHHHHHHHHHHTTSTTEEEEE----EETTEE
T ss_pred --------------CCCCcchhhhhhhhhhhhc--cc---cHHHHHHHHHHHHHHHHHHHhcCCCeeEEe----ecceEE
Confidence 1233433444445565552 22 344555556666666554 345543111 133455
Q ss_pred EEEeccCCCCCCccccccCCCCCC-----hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 416 SFLVYSTTNSSPENMKIERNKPLH-----GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
.+.+..+.. ...+.+ ...+.+.+.+ +|+.+++.
T Consensus 400 gielv~~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------------------------------- 437 (473)
T 4e3q_A 400 ALEAVKDKA---------SKTPFDGNLSVSERIANTCTD-LGLICRPL-------------------------------- 437 (473)
T ss_dssp EEEECSBTT---------TTBCCCGGGCHHHHHHHHHHH-TTEECEEE--------------------------------
T ss_pred EEEEecCcc---------ccccccccHHHHHHHHHHHHH-CCcEEEec--------------------------------
Confidence 554433211 011111 2456677755 69988731
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 491 VKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 491 ~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
...+|+++++..|++|+|+++++|++++++..
T Consensus 438 --g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 438 --GQSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 26799999999999999999999999887643
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=141.63 Aligned_cols=359 Identities=13% Similarity=0.035 Sum_probs=190.9
Q ss_pred EeccCCC------CCcc-hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 79 TYADHTA------SGRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 79 ~Yld~~~------~~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
-|+|..+ .|-. .+.|.+++.+++..+...... + .+.+...++.++|+++++.+.-+.|+|+.||+++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~-----~-~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFP-----E-NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCT-----T-EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccccccc-----c-cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence 4788654 3555 789999998887543211100 0 1123445678888888875422389999899998
Q ss_pred ---HHHHHHHHhcccccchhhhhhhhccC-------CCCceEEEEcCCCCchhHHHHHHcCCe-----------------
Q 043646 152 ---AIKRLQEVMGITVPSIMRDKLITSLR-------DEERWVVFLGPYEHHSNLLSWRQSLAE----------------- 204 (625)
Q Consensus 152 ---al~~l~~~l~~~~~~~~~~~~~~~l~-------~gd~~~Vlv~~~~h~s~~~~~~~~G~~----------------- 204 (625)
+|+++.+..... . +.. ++...+|.....+|.....++...|..
T Consensus 455 ~E~AlK~A~r~~~~~-~---------g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~ 524 (831)
T 4a0g_A 455 IEIALKMAFRKFCVD-H---------NFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLF 524 (831)
T ss_dssp HHHHHHHHHHHHHHT-T---------TC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEE
T ss_pred HHHHHHHHHHHHHhh-c---------CCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccc
Confidence 444432222100 0 000 122234445566666666555543320
Q ss_pred -----------EEEEecCCCC---------CCC------------------HHHHHHHHHHh---hhCCCCeEEEEecc-
Q 043646 205 -----------VVEIGLDDNG---------LLD------------------IEALRSQLELY---KAAKRPMLGSFSAC- 242 (625)
Q Consensus 205 -----------vv~v~~~~~~---------~ld------------------~~~L~~~l~~~---~~~~~~~lv~~~~~- 242 (625)
+..++..... .-+ .++|++.|.+. ...+++.+|++..+
T Consensus 525 ~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvv 604 (831)
T 4a0g_A 525 LDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVI 604 (831)
T ss_dssp ECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSE
T ss_pred cCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEeccc
Confidence 0112221100 011 25667766521 11245789999986
Q ss_pred cCccccccC----HHHHHHHHHHcCCEEEEeccCc-CCCccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEecc
Q 043646 243 SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKA 314 (625)
Q Consensus 243 ~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~-~g~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~ 314 (625)
.+..|.+.+ +++|.++|++||+++|+|+++. +|...- ....++. .+|+++++ |.+++. ..+|+++++++
T Consensus 605 qg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv-~PDiitls--K~L~gG~~Plgav~~~~~ 681 (831)
T 4a0g_A 605 HGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGC-KPDIACFA--KLLTGGMVPLAVTLATDA 681 (831)
T ss_dssp ETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSS-CCSEEEEC--GGGGTTSSCCEEEEECHH
T ss_pred ccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCC-CCcEEEEe--cccccCccCcEEEEECHH
Confidence 888898866 8999999999999999999866 332211 1111111 46888766 999763 24699999998
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhh-cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHH----HH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE-NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVY----IE 389 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l----~~ 389 (625)
+++ .+.+.... .. +.... ..|.|-.++...++++.+..+. -.+++.+....+ .+
T Consensus 682 i~~--~~~~~~~~-~~-----------------~~hg~T~~g~Pla~Aaala~L~~i~~~~-l~~~~~~~~~~l~~~l~~ 740 (831)
T 4a0g_A 682 VFD--SFSGDSKL-KA-----------------LLHGHSYSAHAMGCATAAKAIQWFKDPE-TNHNITSQGKTLRELWDE 740 (831)
T ss_dssp HHH--TTCSSCGG-GS-----------------CCCCCTTTTCHHHHHHHHHHHHHHHCTT-TCTTBCTTSSBBCCCSCH
T ss_pred HHH--HHhccccc-cc-----------------ceeecCCcccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 732 22211000 00 00001 1233444444456666652111 011111111111 12
Q ss_pred HHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 390 SALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 390 ~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
.+.+.+.+.|.+.-+.. .+.++.+.+..+.... .-.......+.+.|.+ .||.++++
T Consensus 741 ~l~~~l~~~~~v~~vrg----~Gl~~~iel~~~~~~~-------~~~~~~a~~~~~~l~e-~Gv~v~p~----------- 797 (831)
T 4a0g_A 741 ELVQQISSHSAVQRVVV----IGTLFALELKADASNS-------GYASLYAKSLLIMLRE-DGIFTRPL----------- 797 (831)
T ss_dssp HHHHHHHHSTTEEEEEE----ETTEEEEEEC----------------CHHHHHHHHHHHH-TTEECCCB-----------
T ss_pred HHHHHHhhCCCceeEee----cccEEEEEEecCcccc-------ccchHHHHHHHHHHHH-CCcEEEec-----------
Confidence 23344444555543322 3355555554321000 0000113457777765 79998742
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.+.+|+++++.+|++|+++++++|++++.+.
T Consensus 798 -----------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 -----------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -----------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred -----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2679999999999999999999999987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 625 | ||||
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 3e-33 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 1e-26 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 9e-25 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 7e-17 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 2e-08 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-07 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 2e-06 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 4e-04 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 130 bits (326), Expect = 3e-33
Identities = 80/449 (17%), Positives = 140/449 (31%), Gaps = 72/449 (16%)
Query: 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135
L Y D AS + + D Y H + + T+ + +
Sbjct: 21 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN 80
Query: 136 GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195
A+ ++F T + + + EHH+N+
Sbjct: 81 ARSAEELVFVRGTTEGINLVA--------------NSWGNSNVRAGDNIIISQMEHHANI 126
Query: 196 LSWRQSL----AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD 251
+ W+ AE+ I L+ +G L +E L + + ++ L + + SNV G +
Sbjct: 127 VPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD-----EKTRLLAITHVSNVLGTENP 181
Query: 252 TRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLI 311
+ L HQ+G D V + D + HK G G + +
Sbjct: 182 LAEMITLAHQHGAKVLVDG---AQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVK 238
Query: 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWV 371
L + PP GG + V+ + R GTP +I A
Sbjct: 239 EALLQE---MPPWEGGGSMIATVSLSEG---TTWTKAPWRFEAGTPNTGGIIGLGAALEY 292
Query: 372 KEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMK 431
+G I + E + AL ++ ++ + G R +++F +
Sbjct: 293 VSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNL------------ 338
Query: 432 IERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGV 491
H V + D +GI R G CA P Y V
Sbjct: 339 ----GKHHAYDVGSFL-DNYGIAVRTGHHCAMPL--------------------MAYYNV 373
Query: 492 KPGWTRITFPYYMSNEEFEFILAALEFIA 520
P R + Y ++EE + ++ L+ I
Sbjct: 374 -PAMCRASLAMYNTHEEVDRLVTGLQRIH 401
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 110 bits (274), Expect = 1e-26
Identities = 86/453 (18%), Positives = 139/453 (30%), Gaps = 69/453 (15%)
Query: 69 FDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASN 128
+ L Y D+ A+ + R + + +++ N H + R T N
Sbjct: 14 LNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRN 73
Query: 129 YIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGP 188
+ + + I++ T A + + +
Sbjct: 74 KVAKFINARSPREIVYTRNATEAI--------------NLVAYSWGMNNLKAGDEIITTV 119
Query: 189 YEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA--AKRPMLGSFSACSNVT 246
EHHSNL+ W+ + G + E LE +K +++ L + SN
Sbjct: 120 MEHHSNLVPWQM---VAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTL 176
Query: 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTP 306
G + IA+L HQ G D S P+ ++ + D + + HK G
Sbjct: 177 GCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLD---VQLIDCDWLVASGHKMCAPTGIG 233
Query: 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAA 366
+ + L PP GG + A D ++ + GTP I + I
Sbjct: 234 FLYGKEEILEA---MPPFFGGGE----MIAEVFFDHFTTGELPHKFEAGTPAIAEAIALG 286
Query: 367 LAFWVKEYIGYEVIKKQEDVYIESA--LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTN 424
A +G E I E +P + R A+ SF V
Sbjct: 287 AAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNV----- 341
Query: 425 SSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAI 484
LH VAT+ D GI R G C P H L
Sbjct: 342 -----------AGLHASDVATMV-DQDGIAIRSGHHCTQPL-HRLFD------------- 375
Query: 485 QKGYLGVKPGWTRITFPYYMSNEEFEFILAALE 517
G R + +Y + EE + L +L+
Sbjct: 376 -------ASGSARASLYFYNTKEEIDLFLQSLQ 401
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 9e-25
Identities = 69/461 (14%), Positives = 135/461 (29%), Gaps = 89/461 (19%)
Query: 80 YADHTASG----RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG 135
Y D++A+ R + ++ + +GN + G + + V A N I +G
Sbjct: 5 YLDYSATTPVDPRVAEKMMQFMTMD--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 62
Query: 136 GGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195
I+F +G T + + + ++ + EH + L
Sbjct: 63 A-DPREIVF-TSGATESDNLAIKGA-------------ANFYQKKGKHIITSKTEHKAVL 107
Query: 196 LSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDT 252
+ RQ EV + NG++D++ L + + +L S +N G+ D
Sbjct: 108 DTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM-----RDDTILVSIMHVNNEIGVVQDI 162
Query: 253 RSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312
+I + G D S + I+L + D + + HK G G G L +
Sbjct: 163 AAIGEMCRARGIIYHVDATQSVGKLPIDL---SQLKVDLMSFSGHKIYGPKGI-GALYVR 218
Query: 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVK 372
+ GG E GT + Q++ A+ +
Sbjct: 219 RKP--RVRIEAQMHGG------------------GHERGMRSGTLPVHQIVGMGEAYRIA 258
Query: 373 EYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKI 432
+ ++ I + + + G+ IL+
Sbjct: 259 KEEMAT-EMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVS-------------- 303
Query: 433 ERNKPLHGPFVATLFNDLFGIQARGGCACAGP---YGHTLLAFDQTRSLEIRSAIQKGYL 489
+ +L L + G AC + L A L
Sbjct: 304 -----FNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEL----------- 347
Query: 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLY 530
R + + + EE ++ + + PL+
Sbjct: 348 --AHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLW 386
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 80.5 bits (197), Expect = 7e-17
Identities = 79/446 (17%), Positives = 139/446 (31%), Gaps = 77/446 (17%)
Query: 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139
Y D+ A+ R + + +I YGN + S +G + +A + + L G
Sbjct: 4 YFDNNATTRVDDRVLEEMIVFYREKYGNPN-SAHGMGIEANLHMEKAREKVAKVL-GVSP 61
Query: 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199
I F + T +I + + + T R + T + + LS +
Sbjct: 62 SEIFF-TSCATESINWILKTVAETFEKRKRTIITTPIEHKAVL--------ETMKYLSMK 112
Query: 200 QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLL 259
+V + +D G++ +E L ++ + L S A +N G + R++
Sbjct: 113 G--FKVKYVPVDSRGVVKLEELEKLVD-----EDTFLVSIMAANNEVGTIQPVEDVTRIV 165
Query: 260 HQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG 319
+ A KI S D + HKF G G + +
Sbjct: 166 KKKNKETLVHVDAVQTIGKIP-FSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR-- 222
Query: 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEV 379
P GGG + + GT + ++ AA A + E
Sbjct: 223 ---PLIHGGGQERGLRS------------------GTQNVPGIVGAARAMEIAVEELSEA 261
Query: 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439
K E + + G + +I S+ +SF +
Sbjct: 262 AKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSF------------------PNIR 303
Query: 440 GPFVATLFNDLFGIQARGGCACAGP---YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496
G + L +GI AC H L A R + G
Sbjct: 304 GSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLDAMGVDRRI-------------AQGAI 349
Query: 497 RITFPYYMSNEEFEFILAALEFIAAY 522
RI+ Y + EE ++ L +E I ++
Sbjct: 350 RISLCKYNTEEEVDYFLKKIEEILSF 375
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.0 bits (131), Expect = 2e-08
Identities = 26/273 (9%), Positives = 71/273 (26%), Gaps = 23/273 (8%)
Query: 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRD 178
+ K+ + + + G + T ++ +R K
Sbjct: 92 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSL--------TLCFLTLRHKRP----- 138
Query: 179 EERWVVFLGPYEHHSNLLSWRQSLAEVVEI---GLDDNGLLDIEALRSQLELYKAAKRPM 235
+ + + S S + E V I D D++A+ ++++
Sbjct: 139 -KAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILC 197
Query: 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA---ASGPYVKINLRSRNIDGYDAI 292
L + + +A + Y + A S + + + + DA
Sbjct: 198 L-HSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAF 256
Query: 293 FLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE 352
+ K P I+ + S ++ +L +
Sbjct: 257 VQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLL 316
Query: 353 NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQED 385
++ + L + + +++ +
Sbjct: 317 KERK-EMFVYLSTQLKKLAEAH-NERLLQTPHN 347
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 51.7 bits (123), Expect = 1e-07
Identities = 32/289 (11%), Positives = 80/289 (27%), Gaps = 33/289 (11%)
Query: 117 QRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSL 176
M + + + L G + + A + R K++ L
Sbjct: 116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEAT--------LVALLAARTKVVRRL 167
Query: 177 RDEE----------RWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLE 226
+ + V + H S + ++ I D + AL+ LE
Sbjct: 168 QAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALE 227
Query: 227 LYKAA-KRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN---LR 282
KAA P + + + + + + H+ + D A +G
Sbjct: 228 RDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL 287
Query: 283 SRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDT 342
++ D+ HK+L + + + ++ K +
Sbjct: 288 LNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLT-----------GAFKLDPVYLKHS 336
Query: 343 LYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391
+ + + R+ ++V G + ++ +++ +
Sbjct: 337 HQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 52/370 (14%), Positives = 104/370 (28%), Gaps = 33/370 (8%)
Query: 51 SEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHT 110
+++ LA LR Q F + Y D + G + +GN
Sbjct: 11 AQDSLAPLRQQ-------FAL---PEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGL- 59
Query: 111 SDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRD 170
S+ + N + +G + ++ + S R
Sbjct: 60 IRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERR 119
Query: 171 KLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA 230
++T + L + LA++++ G + E L ++
Sbjct: 120 VIVTE-------------TSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAID---- 162
Query: 231 AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYD 290
+ + + + TG D +++ L H+ G A +D A S V ++L D
Sbjct: 163 -QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGAD--Y 219
Query: 291 AIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350
AI GGPG+ + +S L L P + G +
Sbjct: 220 AIGCTYKYLNGGPGSQAFVWVSPQLCDL-VPQPLSGWFGHSRQFAMEPRYEPSNGIARYL 278
Query: 351 RENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLG-NTSV 409
+ + F + + + + ++
Sbjct: 279 CGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHA 338
Query: 410 KRQAILSFLV 419
KR + +SF
Sbjct: 339 KRGSHVSFEH 348
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 48/403 (11%), Positives = 101/403 (25%), Gaps = 72/403 (17%)
Query: 116 GQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITS 175
+ M +++ E I+ ++ G+G A + + +++
Sbjct: 47 SKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCA--------LEAALVNVLEPGDSFL 98
Query: 176 LRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235
+ W + ++E A +P+
Sbjct: 99 VGANGIWGQRAVDIGERIGARVHPMTKDP------------GGHYTLQEVEEGLAQHKPV 146
Query: 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLA 295
L + + TG+ L H+Y D AS + + G D ++
Sbjct: 147 LLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLY---MDRQGIDILYSG 203
Query: 296 THKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355
+ K L P ++ S + S Y++ + +D +
Sbjct: 204 SQKALNAPPGTSLISFSDKAKK---KMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHT 260
Query: 356 TPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAIL 415
P I + E G E +Q GR+ + + +++ +
Sbjct: 261 IPVISLYSLRESLALIAEQ-GLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVT 319
Query: 416 SFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475
+ V P + + D F I+ GG +
Sbjct: 320 TVAV-------PAGY--------DWRDIVSYVIDHFDIEIMGGLGPS------------- 351
Query: 476 RSLEIRSAIQKGYLGVKPGWTRI-TFPYYMSNEEFEFILAALE 517
RI + E + + AL
Sbjct: 352 ----------------TGKVLRIGLLGCNATRENVDRVTEALR 378
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 625 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 100.0 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 100.0 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.98 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.97 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.95 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.94 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.93 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.93 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.92 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.92 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.92 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.92 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.92 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.92 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.92 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.92 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.92 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.91 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.91 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.91 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.91 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.9 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.9 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.9 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.9 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.89 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.89 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.89 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.88 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.88 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.87 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.87 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.87 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.86 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.86 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.83 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.82 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.8 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.8 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.79 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.78 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.77 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.77 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.76 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.74 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.74 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.73 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.73 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.73 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.73 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.71 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.7 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.7 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.7 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.7 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.69 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.69 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.68 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.67 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.67 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.67 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.67 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.65 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.65 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.64 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.64 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.63 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.63 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.63 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.62 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.61 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.61 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.5 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.47 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.45 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.35 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-50 Score=426.98 Aligned_cols=395 Identities=24% Similarity=0.349 Sum_probs=330.3
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
.++++|++||....... + ++++|||++++++.|+.|++++.+++...++||++..+..+....+.++++|+.++++
T Consensus 3 d~~~vR~~FP~l~~~~~---~-~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~ 78 (405)
T d1jf9a_ 3 SVDKVRADFPVLSREVN---G-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLF 78 (405)
T ss_dssp CHHHHHHTCGGGGCEET---T-EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhChhcccCcC---C-CCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999987532111 1 4679999999999999999999999988899999877778888889999999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEe
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIG 209 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~ 209 (625)
+|+.++++++|+ +|+|++++.++..+... .+.+|++ |++++.+|+++..+|+. .|++|+.+|
T Consensus 79 l~~~~~~~i~~~-~~~T~~~~~~~~~~~~~-----------~~~~g~~--il~~~~e~~s~~~~~~~~a~~~g~~v~~~~ 144 (405)
T d1jf9a_ 79 INARSAEELVFV-RGTTEGINLVANSWGNS-----------NVRAGDN--IIISQMEHHANIVPWQMLCARVGAELRVIP 144 (405)
T ss_dssp TTCSCGGGEEEE-SSHHHHHHHHHHHHHHH-----------HCCTTCE--EEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred cCCCCccccccc-CcHHHHHHHHHhccccc-----------ccCCCCE--EEEEeCcccchHHHHHHHHHHcCcEEEEEC
Confidence 998765589998 67888888877764210 2567775 99999999999999864 499999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
++++|.+|++.++++++ ++|++|++++++|.||.+.|+++|+++||++|+++++|++|++|+.++|++.+ ++
T Consensus 145 ~~~~g~~~~~~~~~~i~-----~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~---~~ 216 (405)
T d1jf9a_ 145 LNPDGTLQLETLPTLFD-----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DC 216 (405)
T ss_dssp BCTTSCBCGGGHHHHCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TC
T ss_pred CCCCCcCCHHHHHHhcc-----CCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc---CC
Confidence 99999999999999887 68999999999999999999999999999999999999999999999999988 99
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal 367 (625)
|++++|+|||+ ||.|+|+++++++. +..+.|...++....... ......+.+.+.+++.||+++.++++ +++
T Consensus 217 D~~~~s~hK~~-Gp~G~g~l~v~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al 290 (405)
T d1jf9a_ 217 DFYVFSGHKLY-GPTGIGILYVKEAL--LQEMPPWEGGGSMIATVS---LSEGTTWTKAPWRFEAGTPNTGGIIGLGAAL 290 (405)
T ss_dssp SEEEEEGGGTT-SCSSCEEEEECHHH--HTTCCCSSCSSSSEEECC---TTTCCEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred ceeeccccccc-cCCCceeeeechhh--hcccCcccccccccCccc---cccccccccchhhhcCCCCcHHHHHHHHHHH
Confidence 99999999997 59999999999998 556777766665544332 12233455668899999999988764 455
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
+++ ...|++.+.++...+.+++.+.+..++.+.+.++. .+.++++|.+.. .++.++...|
T Consensus 291 ~~~--~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~--~r~~ivsf~~~~----------------~~~~~~~~~L 350 (405)
T d1jf9a_ 291 EYV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNLGK----------------HHAYDVGSFL 350 (405)
T ss_dssp HHH--HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--TCCSEEEEEETT----------------CCHHHHHHHH
T ss_pred HHH--HHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc--CcCcEEEEEcCC----------------CCHHHHHHHH
Confidence 555 67899999999999999999999999999888874 588999998743 2467788887
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++||.++.|++|+.+... .++ .+|++|||+++|+|.+|||+++++|+++.+-
T Consensus 351 -~~~gI~v~~G~~c~~~~~~-~~~--------------------~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 351 -DNYGIAVRTGHHCAMPLMA-YYN--------------------VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp -HHTTEECEEECTTCHHHHH-HTT--------------------CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HHCCcEEEccchhhhhHHH-hcC--------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 6689999999999854322 122 2589999999999999999999999988753
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.1e-48 Score=418.91 Aligned_cols=396 Identities=24% Similarity=0.350 Sum_probs=327.3
Q ss_pred HHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 043646 54 KLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRC 133 (625)
Q Consensus 54 ~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~ 133 (625)
.++.+|++||...... + .++++|||++++++.|+.|++++.+++...++||++..+..+....+.++++|+.++++
T Consensus 3 ~~a~iR~~FP~l~~~~---~-~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~l 78 (408)
T d1t3ia_ 3 LAATVRQDFPILNQEI---N-GHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKF 78 (408)
T ss_dssp HHHHHGGGCGGGSCEE---T-TEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCccccccc---C-CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678999998663211 1 25679999999999999999999999988899999877778888889999999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEe
Q 043646 134 LGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIG 209 (625)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~ 209 (625)
+|+++++.++|+ ++++++++.++..+... .+++|++ |+++..+|+++..+|+. .|++++.+|
T Consensus 79 lga~~~~~i~~~-~~tt~~~n~~~~~~~~~-----------~~~~g~~--il~s~~e~~s~~~~~~~~~~~~g~~v~~~~ 144 (408)
T d1t3ia_ 79 INARSPREIVYT-RNATEAINLVAYSWGMN-----------NLKAGDE--IITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 144 (408)
T ss_dssp TTCSCGGGEEEE-SSHHHHHHHHHHHTHHH-----------HCCTTCE--EEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred hCCCCcccEEee-cchHHHHHHHHhhcccc-----------ccCCCCE--EEeecccchhhhhhhhhhhhccCceEeeee
Confidence 999876578888 78888888877664210 2578885 99999999999988864 499999999
Q ss_pred cCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCC
Q 043646 210 LDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGY 289 (625)
Q Consensus 210 ~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~ 289 (625)
.+.++..+.+.|+++++ ++|++|++++++|.||.+.|+++|+++||++|+++++|++|++|+.++|++.+ ++
T Consensus 145 ~~~~~~~~~~~l~~~~~-----~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~---~~ 216 (408)
T d1t3ia_ 145 LDEQESFDLEHFKTLLS-----EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DC 216 (408)
T ss_dssp BCTTSSBCHHHHHHHCC-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TC
T ss_pred ccccccccHHHhhhccC-----CCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccccccccc---CC
Confidence 99889999999999887 68999999999999999999999999999999999999999999999999988 89
Q ss_pred cEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHH
Q 043646 290 DAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AAL 367 (625)
Q Consensus 290 D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal 367 (625)
|++++|+|||+ ||.|+|+++++++. +...+|...||....... .....+.+.+.+++.||+++..+++ +++
T Consensus 217 D~~~~s~hK~~-gp~G~g~l~v~~~~--~~~~~p~~~g~~~~~~~~----~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al 289 (408)
T d1t3ia_ 217 DWLVASGHKMC-APTGIGFLYGKEEI--LEAMPPFFGGGEMIAEVF----FDHFTTGELPHKFEAGTPAIAEAIALGAAV 289 (408)
T ss_dssp SEEEEEGGGTT-SCTTCEEEEECHHH--HHHSCCCSCSTTSEEEEC----SSCEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred ceEEecccccc-CCCCccccccchhh--hhcCCceecCCccccccc----ccccccCCchhhhcCCcHHHHHHHHHHHHH
Confidence 99999999996 58889999999998 334556555554433221 1223344567899999999988764 455
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 368 AFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS--VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~--~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
+++ ...|++++.++...+.+++.+.+..++++.++++.. ..+.++++|.+.. +++.++++
T Consensus 290 ~~~--~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~----------------~~~~~v~~ 351 (408)
T d1t3ia_ 290 DYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG----------------LHASDVAT 351 (408)
T ss_dssp HHH--HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT----------------BCHHHHHH
T ss_pred HHH--HHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCC----------------CCHHHHHH
Confidence 555 678999999999999999999999999999998653 4578899998743 35778888
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.| +++||.+++|++|+.+. +.+++ .++++|||+++|||++|||+++++|+++++.
T Consensus 352 ~L-~~~gI~v~~G~~c~~~~-~~~~~--------------------~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 352 MV-DQDGIAIRSGHHCTQPL-HRLFD--------------------ASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp HH-HTTTEECBCSCTTCHHH-HHHTT--------------------CCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HH-hhCCcEEecCcccccHH-HHhhc--------------------CCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 88 56899999999999554 44444 2589999999999999999999999998764
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-43 Score=375.02 Aligned_cols=376 Identities=18% Similarity=0.236 Sum_probs=295.3
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhC--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVL--PFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~--~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
.+|||+++++|.++.|.+++.+++. ..++||++..|..+....+.++++|+.+++++|++++ +|+|| +|+|++++.
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-~I~~~-~~~t~~l~~ 80 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATESDNL 80 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEE-CCHHHHHHH
Confidence 4799999999999999999999874 4678999887778888899999999999999999887 89998 788888888
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
++.++... .+++||+ |++++.+|+++...|+. .|++++.++.+.++.+|+++++++++ +
T Consensus 81 ~~~~~~~~-----------~~~~gd~--Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~-----~ 142 (391)
T d1p3wa_ 81 AIKGAANF-----------YQKKGKH--IITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR-----D 142 (391)
T ss_dssp HHHHHHHH-----------HGGGCCE--EEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC-----T
T ss_pred HHhhhhhh-----------hcCCCCE--EEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCC-----C
Confidence 87765210 1468885 99999999999877654 49999999999889999999999998 7
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
+|++|++++++|+||.+.|+++|+++||++|+++++|++|+.|+.++|+..+ ++|++++++|||+| |.|+|+++++
T Consensus 143 ~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~---~~D~~~~s~~k~~g-~~g~g~~~~~ 218 (391)
T d1p3wa_ 143 DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIYG-PKGIGALYVR 218 (391)
T ss_dssp TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTS---CCSEEEEESTTTTS-CSSCEEEEEC
T ss_pred CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhc---cccccccccccccC-CCceEEEEEe
Confidence 8999999999999999999999999999999999999999999999999987 89999999999975 7789999999
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
++. +....|...||.. +.++..|+.+..+.+..+..+..... ......++...+..++.
T Consensus 219 ~~~--~~~~~~~~~gg~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~ 277 (391)
T d1p3wa_ 219 RKP--RVRIEAQMHGGGH------------------ERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLW 277 (391)
T ss_dssp BTT--BCCCCCSSCSSCT------------------TTTTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cch--hcccCCcccCCcc------------------ccCcccCcchhhhhhhhhhhhhHHHH-HhhHHHHHHHHHHHHHH
Confidence 988 5566676666543 44566777766655433222211111 13344567788899999
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh---Hhh
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG---HTL 469 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~---~~~ 469 (625)
+.|..+++..+..........+++|.... .....+...| .+|.++.|++|..+.. +.+
T Consensus 278 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~l 338 (391)
T d1p3wa_ 278 NGIKDIEEVYLNGDLEHGAPNILNVSFNY----------------VEGESLIMAL---KDLAVSSGSACTSASLEPSYVL 338 (391)
T ss_dssp HTTTTSTTEEECSCTTTSCTTEEEEEETT----------------SCHHHHHHHT---TTEECBCCCC------CCCHHH
T ss_pred HHHHhhcCeeecccccccCceEEEEEeCC----------------CChHHHHHHh---CCCEEEccccccCCccchhHHH
Confidence 99999988877655433344455554432 2355666655 5799999999974321 111
Q ss_pred --hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhhhcccCccc
Q 043646 470 --LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGHRFLPLYHF 532 (625)
Q Consensus 470 --l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~ 532 (625)
+++... . .+|++|||+++|||++|||+++++|+++++.++.++|+|..
T Consensus 339 ~~~g~~~~--~-------------~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~ 388 (391)
T d1p3wa_ 339 RALGLNDE--L-------------AHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEM 388 (391)
T ss_dssp HHHTCCHH--H-------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHcCCCcc--c-------------cCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHHHh
Confidence 122211 1 14789999999999999999999999999999999999854
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=1.2e-41 Score=360.46 Aligned_cols=361 Identities=17% Similarity=0.102 Sum_probs=288.0
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
...+|||+++.+++|+.|++++.+.+.....+++. .+..+....+.++++|+.+++++|++++ +|+|| +|+|++++.
T Consensus 6 ~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~-~i~~~-~g~t~a~~~ 82 (381)
T d1elua_ 6 ANKTYFNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPN-TITIT-DNVTTGCDI 82 (381)
T ss_dssp TTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEE-SSHHHHHHH
T ss_pred CCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcc-cEEEE-CChHHHhhh
Confidence 35799999999999999999998888655555543 2345566778889999999999999877 89999 678888999
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH----cCCeEEEEecCCCCCC--CHHHHHHHHHHhh
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ----SLAEVVEIGLDDNGLL--DIEALRSQLELYK 229 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~~~l--d~~~L~~~l~~~~ 229 (625)
++.++. +++|++ |+++..+|+++..+|+. .|++++.+|.+.+... +.+.++++++
T Consensus 83 ~~~~l~--------------~~~g~~--i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~--- 143 (381)
T d1elua_ 83 VLWGLD--------------WHQGDE--ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG--- 143 (381)
T ss_dssp HHHHSC--------------CCTTCE--EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---
T ss_pred cchhhh--------------hcCCce--EEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc---
Confidence 888763 567885 99999999999887754 5999999998754322 2455555555
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHc----CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY----GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT 305 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~----g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g 305 (625)
++|+++++++++|+||.+.|+++|.++||++ |+++++|++|++|..++++..+ ++|++++|+|||+++|.|
T Consensus 144 --~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~---~~D~~~~s~~K~~~~p~G 218 (381)
T d1elua_ 144 --PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRL---EVDYYAFTGHKWFAGPAG 218 (381)
T ss_dssp --TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTS---CCSEEEEESSSTTCCCTT
T ss_pred --ccccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccc---ccccccccccccccccch
Confidence 6899999999999999999999999999985 6999999999999999999987 899999999999999999
Q ss_pred ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcC-HHHHHH
Q 043646 306 PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIG-YEVIKK 382 (625)
Q Consensus 306 ~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g-~~~i~~ 382 (625)
+|+++++++. ...+.|...||+...+... .....+.....++..||++...++. ++++++ ...| .+.+.+
T Consensus 219 ~g~l~~~~~~--~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~--~~~g~~~~~~~ 291 (381)
T d1elua_ 219 VGGLYIHGDC--LGEINPTYVGWRSITYGAK---GEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH--QRQGTAEERYQ 291 (381)
T ss_dssp CEEEEECTTT--GGGCCCCSCCTTTEEECTT---SCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH--HHHCCHHHHHH
T ss_pred hhHHHhhHHH--HHhcCcccccccccccccc---cccccccccccccccccccchhhhhhhhhhhhH--HHhcccccchh
Confidence 9999999998 4567788877765443321 1122334446778899998877653 455554 3444 455668
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+...+++++.+.|+++|+++++++. ..+.++++|.+... .+.+++.+.|. +.||.++. ++
T Consensus 292 ~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~vsf~~~~~---------------~~~~~i~~~L~-~~gi~v~~---~~ 351 (381)
T d1elua_ 292 AICQRSEFLWRGLNQLPHVHCLATS-APQAGLVSFTVDSP---------------LGHRAIVQKLE-EQRIYLRT---IA 351 (381)
T ss_dssp HHHHHHHHHHHHHHHSTTEEESCSS-CCSSSEEEEEECSS---------------SCHHHHHHHHH-HTTEECEE---ET
T ss_pred hhhhHHHHHHHHHhcCCCeEecCCC-CccccEEEEEcCCC---------------CCHHHHHHHHH-hCCcEEEe---cC
Confidence 8888999999999999999999875 45789999987532 23567888885 57999873 11
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++|||+++|||++|||+++++|+++
T Consensus 352 -----------------------------~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 352 -----------------------------DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp -----------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred -----------------------------CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 2589999999999999999999999864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.2e-40 Score=348.91 Aligned_cols=366 Identities=21% Similarity=0.300 Sum_probs=279.2
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
.+|||+++++++|+.|.|++.+++...++||++. +..+....+.++++|+.+++++|++++ +|+|+ +|+|++++.++
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~-~~~~~~~~~~~~~aR~~ia~l~~~~~~-~i~~~-~~~T~~l~~~~ 78 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATESINWIL 78 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCS-SHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHHHcCCCCccc-cHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEE-CCHHHHHHhhh
Confidence 4899999999999999999999998889999874 567788889999999999999999887 89998 78888898887
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH---cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCC
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ---SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
..++.. .+.+|+ +|+++..+|+++...++. .|++++.+|++.++.+|+++++++++ ++|
T Consensus 79 ~~~~~~-----------~~~~g~--~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~-----~~t 140 (376)
T d1eg5a_ 79 KTVAET-----------FEKRKR--TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-----EDT 140 (376)
T ss_dssp HHHHHH-----------TTTTCC--EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-----TTE
T ss_pred hccccc-----------ccccCc--ccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcC-----CCc
Confidence 765321 135555 477777777777766543 59999999999999999999999998 689
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 235 MLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
++|++++++|+||.+.|+++|+++++.+ |+++++|++|++|..++|+..+ ++|++++|+|||+ ||.|.|+++++
T Consensus 141 ~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~---~~D~~~~s~~K~~-gp~G~~~l~~~ 216 (376)
T d1eg5a_ 141 FLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFH-GPKGVGITYIR 216 (376)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGT-SCTTCEEEEEC
T ss_pred eEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccccccccccc---Cccceecccceee-cCCCceeEEec
Confidence 9999999999999999999999999765 8999999999999999999987 8999999999997 48889999998
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESAL 392 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~ 392 (625)
++. .+.|...||+. ...+..|+.+..+...++..... ..........+...+..++.
T Consensus 217 ~~~----~~~p~~~g~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 273 (376)
T d1eg5a_ 217 KGV----PIRPLIHGGGQ------------------ERGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKLRSKLV 273 (376)
T ss_dssp TTS----CCCCSBCSSCT------------------TTTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHH
T ss_pred cCc----ccCCcccCCCC------------------cccccCCcccchhhhhHHHHhhc-cccchhhhhhhhhhhhhhhc
Confidence 875 35677776654 23455677766665433222221 12345566667777788888
Q ss_pred HhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchh---hHhh
Q 043646 393 GRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPY---GHTL 469 (625)
Q Consensus 393 ~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~---~~~~ 469 (625)
+.|..... .+..+....+..++++.+.. +++..+...| +.+||.+|+|++|+.+. .+.+
T Consensus 274 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~L-~~~gI~vr~G~~c~~~~~~~~~~l 335 (376)
T d1eg5a_ 274 SGLMNLGA-HIITPLEISLPNTLSVSFPN----------------IRGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVL 335 (376)
T ss_dssp HHHHTTTC-EECSCTTSBCTTEEEEECTT----------------CCHHHHHHHH-HHTTEECBC------------CHH
T ss_pred cccccccc-cccccccccccceeeeccCC----------------CCHHHHHHHH-hhCCeEEeCcchhcCCccchhHHH
Confidence 88877643 44444445566677776643 3577888877 66899999999997431 1111
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
..++.+... .++++|||+++|+|++|||+++++|++++..
T Consensus 336 ~~~gi~~~~-------------~~~~iRiS~~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 336 DAMGVDRRI-------------AQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp HHTTCCHHH-------------HHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCccc-------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 112211111 1478999999999999999999999998763
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=1.9e-39 Score=345.97 Aligned_cols=382 Identities=18% Similarity=0.190 Sum_probs=284.1
Q ss_pred HHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Q 043646 52 EEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIK 131 (625)
Q Consensus 52 ~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia 131 (625)
++.|..+|++|+.. +..+|||+++.++.|+.|.+++.+++...++|++.. +..+..+.+.++++|+.++
T Consensus 12 ~d~l~~~R~~F~~~----------~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~e~~R~~iA 80 (404)
T d1qz9a_ 12 QDSLAPLRQQFALP----------EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLA 80 (404)
T ss_dssp TCTTGGGGGGBCCC----------TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHH
T ss_pred CCcHHHHHhcCCCC----------CCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcc-cccchhHHHHHHHHHHHHH
Confidence 44567789998754 578999999999999999999999987777777642 2223334578899999999
Q ss_pred HHhCCCCCCcEEEeCChHHHHHHHHHHHh-cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEec
Q 043646 132 RCLGGGQADAIIFCGAGTTAAIKRLQEVM-GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGL 210 (625)
Q Consensus 132 ~~~g~~~~~~vift~sGttaal~~l~~~l-~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (625)
+++|++++ +++||+ ++|.+++.++... ... ....+++. |+++..+|+++...+...++++..++.
T Consensus 81 ~llga~~~-ei~~~~-~~T~~~~~~~~~~~~~~----------~~~~~~~~--vi~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (404)
T d1qz9a_ 81 TLIGARDG-EVVVTD-TTSINLFKVLSAALRVQ----------ATRSPERR--VIVTETSNFPTDLYIAEGLADMLQQGY 146 (404)
T ss_dssp TTTTCCTT-SEEECS-CHHHHHHHHHHHHHHHH----------HHHSTTCC--EEEEETTSCHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCCCC-cEEEec-CchHHHHHHhhhhhhhh----------cccCCCcE--EEEeccccchHHHHHHhhhheeeeece
Confidence 99999988 799995 5555555544322 100 01356665 777778888877677665555555554
Q ss_pred CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCc
Q 043646 211 DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYD 290 (625)
Q Consensus 211 ~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D 290 (625)
+.++..+++.++++++ ++|++|++++++|.||.+.|+++|+++||++|+++++|++|++|..++++..+ ++|
T Consensus 147 ~~~~~~~~~~~~~~i~-----~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~---~~d 218 (404)
T d1qz9a_ 147 TLRLVDSPEELPQAID-----QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GAD 218 (404)
T ss_dssp EEEEESSGGGHHHHCS-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCS
T ss_pred eccccccchhHHHhcC-----CCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccc---cce
Confidence 4456667888898887 68999999999999999999999999999999999999999999999999988 899
Q ss_pred EEEEcCCCCCCC-CCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHH
Q 043646 291 AIFLATHKFLGG-PGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAF 369 (625)
Q Consensus 291 ~v~~S~hK~lgg-p~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~ 369 (625)
++++++|||+++ |+|+|++++++.. +..+++...+++... ..+.............+++.++++..+........
T Consensus 219 ~~~~s~~K~~~~~~g~~g~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (404)
T d1qz9a_ 219 YAIGCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFGHS--RQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGL 294 (404)
T ss_dssp EEEECSSSTTCCCTTCCCEEEECTTT--TTTSCCSCCCGGGBC--TTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHH
T ss_pred EEEEechhhcccCCceEEEEEechhh--hhhCCccccccCCcc--ccccccccccccccchhhhhhhccchhHHHHHHHH
Confidence 999999999855 5558899998887 444544443333211 11111122223344677888998888776443333
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHH---hhCCCCcEEEeCCCC-CCCcceEEEEeccCCCCCCccccccCCCCCChHHHHH
Q 043646 370 WVKEYIGYEVIKKQEDVYIESALG---RILPNQNIQVLGNTS-VKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVAT 445 (625)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~l~~---~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 445 (625)
......+.+.+.++...+.+++.. .+...+++++++|.+ ..++++++|.+.. +.++.+
T Consensus 295 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~------------------~~~v~~ 356 (404)
T d1qz9a_ 295 DVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE------------------GYAVIQ 356 (404)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT------------------HHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC------------------HHHHHH
Confidence 333678888888887777666544 445678999998765 5788999997742 568999
Q ss_pred HhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHh
Q 043646 446 LFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP-YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 446 ~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~ 522 (625)
.|. ..||.+. .| .++.||||++ +|||++|||+++++|++++++
T Consensus 357 ~L~-~~gi~~~---~r------------------------------~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 357 ALI-DRGVIGD---YR------------------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHH-TTTEECE---EE------------------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HCCCEEe---ec------------------------------CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 995 4798653 22 2488999995 699999999999999999876
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-34 Score=307.35 Aligned_cols=358 Identities=14% Similarity=0.122 Sum_probs=266.1
Q ss_pred CCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 84 TASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 84 ~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
.+-++.++.|++++.... .++.+..+.++++++++.+++++|++.+..|+|+| |+|.++..++..+
T Consensus 25 pGP~~~~~~Vl~am~~~~----------i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~g-sgT~a~~~~i~~l--- 90 (388)
T d1h0ca_ 25 PGPSNLPPRIMAAGGLQM----------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG-SGHCALEAALVNV--- 90 (388)
T ss_dssp SSCCCCCHHHHHHHTCCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESS-CHHHHHHHHHHHH---
T ss_pred CCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcC-cHHHHHHHHHHHh---
Confidence 344567788888874322 12356788999999999999999998765789985 5555677777665
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEec
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSA 241 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~ 241 (625)
+.++++ +++....|.+....+ ...+..++.+..+..+.+|.+.+++.+.. .++++|++++
T Consensus 91 ------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~ 152 (388)
T d1h0ca_ 91 ------------LEPGDS--FLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQ----HKPVLLFLTH 152 (388)
T ss_dssp ------------CCSSCC--EEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHH----HCCSEEEEES
T ss_pred ------------hccCCc--eeeecccceeeeeccccccccccccccccCCccccchHHHHHHhcc----CCcceEEEee
Confidence 577886 888888888876443 23577777777777788999999888875 4799999999
Q ss_pred ccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC
Q 043646 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS 321 (625)
Q Consensus 242 ~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~ 321 (625)
++|.||.+.|+++|+++||++|+++++|++|++|+.++|+..+ ++|+++++.|||+++|.|+|++++++... +.+
T Consensus 153 ~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~---~~D~~~~s~~K~~~gp~g~~~~~~~~~~~--~~~ 227 (388)
T d1h0ca_ 153 GESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQ---GIDILYSGSQKALNAPPGTSLISFSDKAK--KKM 227 (388)
T ss_dssp EETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCTTCEEEEECHHHH--HHH
T ss_pred eeeccccccCHHHHHHHhhcccccceecccccccccccccccc---ccceecccccccccCCCceEEEeecHHHH--Hhh
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999998762 222
Q ss_pred CCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 322 PPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
.+...++... +.+ +.............++..+|+++..+......++.....|.+.+.++...+.+++++.+..+ ++
T Consensus 228 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~ 304 (388)
T d1h0ca_ 228 YSRKTKPFSF-YLD-IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GL 304 (388)
T ss_dssp TTCSSCCSCS-TTC-HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred hhcccccccc-ccc-cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-Cc
Confidence 2222211110 000 00000000011234566788888777654444443467899999999999999999999876 44
Q ss_pred EEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHH
Q 043646 402 QVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEI 480 (625)
Q Consensus 402 ~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~ 480 (625)
.++.+....+. .+++|.+.. +++..++.+.|.+++||.++.|..|.
T Consensus 305 ~~~~~~~~~rs~~i~~~~~p~---------------~~~~~~~~~~L~~~~gI~v~~G~~~~------------------ 351 (388)
T d1h0ca_ 305 QLFVKDPALRLPTVTTVAVPA---------------GYDWRDIVSYVIDHFDIEIMGGLGPS------------------ 351 (388)
T ss_dssp CBSSCSGGGBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCEECEECCGGG------------------
T ss_pred ccccCCHHHcCCeEEEEECCC---------------CCCHHHHHHHHHhcCCEEEeCCchhh------------------
Confidence 44443333444 466676633 24578899998888999999887553
Q ss_pred HHHHHhCCCCCCCcEEEEe-cCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 481 RSAIQKGYLGVKPGWTRIT-FPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 481 ~~~~~~g~~g~~~g~iRis-~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
+++.+||| +++++|.+|||+++++|++++++..|
T Consensus 352 -----------~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 352 -----------TGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp -----------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred -----------cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34789999 79999999999999999999998754
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=5.6e-31 Score=284.42 Aligned_cols=420 Identities=12% Similarity=0.055 Sum_probs=280.1
Q ss_pred ccccccccCCCCCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc
Q 043646 34 QTCSEFKNDHHPPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD 112 (625)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~ 112 (625)
+..+.+.++..+|+. .+.++.++++++.+......+.+| + |+.+-.++..+..++..+..... |+....
T Consensus 35 p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P---~---f~~~~~~~~~~~~~l~~~~~~~~----n~n~~~ 104 (476)
T d1js3a_ 35 PGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSP---Y---FFAYFPTASSYPAMLADMLCGAI----GCIGFS 104 (476)
T ss_dssp TTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTST---T---BCSSSCCCCCHHHHHHHHHHHHH----CCCCSS
T ss_pred hHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCC---C---eeEeCCCCCCHHHHHHHHHHHhh----cccccc
Confidence 344555666666666 888999999999886554455554 4 55555455556666655544442 444445
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCC---CCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQA--------DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRD---EER 181 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~---gd~ 181 (625)
+..++..+.+..++.+|+++++|.+.. ...++|++||.+++..+..++....+.. +.. ..++.. ..+
T Consensus 105 ~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~-~~~-~~g~~~~~~~~~ 182 (476)
T d1js3a_ 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL-QAA-SPGLTQGAVLEK 182 (476)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH-HHH-STTCCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhh-ccc-ccCcccccccCc
Confidence 667888999999999999999999631 1457887788898888877764211100 000 000000 124
Q ss_pred eEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC-CCeEEEEecccCccccccCHHHHHHHHH
Q 043646 182 WVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK-RPMLGSFSACSNVTGIYSDTRSIARLLH 260 (625)
Q Consensus 182 ~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~-~~~lv~~~~~~n~TG~~~~l~~I~~la~ 260 (625)
.+|+++...|+|+.++++..|..++.||+++++.+|+++|+++|+++...+ .|.+|+.+++++.||.++|+++|+++|+
T Consensus 183 ~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~ 262 (476)
T d1js3a_ 183 LVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262 (476)
T ss_dssp EEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred eEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHH
Confidence 689999999999999999999999999999999999999999998765433 4689999999999999999999999999
Q ss_pred HcCCEEEEeccCcCCCccccC-CCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC--CCCcccCCceEEeec
Q 043646 261 QYGGFACFDFAASGPYVKINL-RSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS--SPPSTCGGGTVNYVN 335 (625)
Q Consensus 261 ~~g~~vivD~A~~~g~~~id~-~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~--~~p~~~ggg~v~~~~ 335 (625)
+||+|+|||+|+++.....+- +.. +.+.+|++++++|||++.|.++|++++++....... ..+.+.....
T Consensus 263 ~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~----- 337 (476)
T d1js3a_ 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSH----- 337 (476)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC---------------
T ss_pred hcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhcccc-----
Confidence 999999999998765544322 111 234689999999999999999999999875421111 1111100000
Q ss_pred cccccccccccchhhhhcCCChhHHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcce
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQM-IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAI 414 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i 414 (625)
.......+......+.+- ...++ +-+++..+ ...|++.+.++...+++++.+.|++.|+++++.+. ..++
T Consensus 338 ---~~~~~~~~~~~~~~~~sr-~~~al~lw~~l~~~--G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p---~l~i 408 (476)
T d1js3a_ 338 ---QGSGLITDYRHWQLPLGR-RFRSLKMWFVFRMY--GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV---TLGL 408 (476)
T ss_dssp -----CCSCCCGGGSSSCSCC-CCTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC---CSSE
T ss_pred ---ccccccccccccccccch-hhHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCC---ceEE
Confidence 000000000011111111 11111 12223332 56788889999999999999999999999999764 6789
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCc
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPG 494 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g 494 (625)
++|...+.+ .+ ...+.+.|++. | ..+++... ++ ...
T Consensus 409 V~Fr~~~~d-------------~~-n~~l~~~l~~~-G-----~~~~s~t~----~~--------------------g~~ 444 (476)
T d1js3a_ 409 VCFRLKGSD-------------GL-NEALLERINSA-R-----KIHLVPCR----LR--------------------GQF 444 (476)
T ss_dssp EEEEESSCH-------------HH-HHHHHHHHHHH-T-----SCBCEEEE----ET--------------------TEE
T ss_pred EEEEccCCh-------------HH-HHHHHHHHHhc-C-----CEEEeeee----EC--------------------CEE
Confidence 999875431 00 12344444432 2 22232110 00 135
Q ss_pred EEEEecC-CCCCHHHHHHHHHHHHHHHHhh
Q 043646 495 WTRITFP-YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 495 ~iRis~~-~~~t~edid~ll~aL~~~~~~~ 523 (625)
++|+++. +.++++||+.+++.|++++++.
T Consensus 445 ~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 445 VLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999985 7789999999999999998764
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=100.00 E-value=2.4e-31 Score=279.92 Aligned_cols=355 Identities=15% Similarity=0.091 Sum_probs=259.6
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (625)
..||...+.++.|+.|++++.... .++.+..+.++++++++.+++++|++++..|+|+ +|+|.++..++
T Consensus 18 ~~~l~~PGP~~v~~~Vl~am~~~~----------~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~-g~gT~~~~~~~ 86 (377)
T d1vjoa_ 18 SRLLLGPGPSNAHPSVLQAMNVSP----------VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVS-GTGTAAMEATI 86 (377)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEc-CcHHHHHHHHH
Confidence 357777788889999998874321 1346678899999999999999999876577777 55666677776
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH--HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR--QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
..+ +.++++ +++....|.+....+. ..+..+..+....+...+.+..+..... ++++
T Consensus 87 ~~~---------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 145 (377)
T d1vjoa_ 87 ANA---------------VEPGDV--VLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET----HRPA 145 (377)
T ss_dssp HHH---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCS
T ss_pred Hhc---------------cccccc--cceeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhc----Ccce
Confidence 665 467775 6777777777654433 3466666666666556666666666554 4789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+|++++.+|.||.+.|+++|+++||++|+++++|++|++|+.+++++.+ ++|+++++.|||+++|.|+|++++++..
T Consensus 146 ~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~---~~d~~~~s~~K~~~gp~g~~~~~~~~~~ 222 (377)
T d1vjoa_ 146 ILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSSRA 222 (377)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECHHH
T ss_pred eeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhccccc---ccceeeecccccccCCCEEEEecchhhH
Confidence 9999999999999999999999999999999999999999999999998 9999999999999999999999999877
Q ss_pred cccCCCCCcccCCceEEeecccccccc-ccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDT-LYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~-~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
. +...+...++... ..... ........++..+++++..........+.....|.+.+.++.+.+..++++.
T Consensus 223 ~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 294 (377)
T d1vjoa_ 223 I--EKLQRRRTKVANW------YLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER 294 (377)
T ss_dssp H--HHHHTCSSCCSCS------TTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred H--hhhhccCCCCcce------eeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhh
Confidence 3 2222222222110 00000 0001112344556666666544433344346678999999999999999999
Q ss_pred hCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCCh
Q 043646 395 ILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQ 474 (625)
Q Consensus 395 L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~ 474 (625)
|... ++.++.+.......+++|.+.. ++++.++.+.|.+++||.++.|..|.
T Consensus 295 l~~~-~~~~~~~~~~rs~~v~~~~~p~---------------~~~~~~l~~~L~~~~gI~v~~G~~~~------------ 346 (377)
T d1vjoa_ 295 LEDI-GLSLHVEKEYRLPTLTTVCIPD---------------GVDGKAVARRLLNEHNIEVGGGLGEL------------ 346 (377)
T ss_dssp HHHT-TCCBSSCGGGBCSSEEEEECCT---------------TCCHHHHHHHHHHHHCEECEECCGGG------------
T ss_pred hhcc-CceeecChHhcCCeEEEEECCC---------------CCCHHHHHHHHHhcCCEEEecCcccc------------
Confidence 9775 5555554323334456666533 24678999988888999999886542
Q ss_pred hhHHHHHHHHHhCCCCCCCcEEEEe-cCCCCCHHHHHHHHHHHHHHH
Q 043646 475 TRSLEIRSAIQKGYLGVKPGWTRIT-FPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 475 ~~~~~~~~~~~~g~~g~~~g~iRis-~~~~~t~edid~ll~aL~~~~ 520 (625)
+++.+||| +|+++|++||++++++|++++
T Consensus 347 -----------------~~~~~Ris~~g~~~t~edi~~lv~al~~~l 376 (377)
T d1vjoa_ 347 -----------------AGKVWRVGLMGFNSRKESVDQLIPALEQVL 376 (377)
T ss_dssp -----------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred -----------------cCCEEEEecCcCCCCHHHHHHHHHHHHHHh
Confidence 34789999 589999999999999999886
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.8e-31 Score=276.85 Aligned_cols=345 Identities=10% Similarity=0.047 Sum_probs=239.3
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.+.|+.|++++.+.. .++.+..+.+.++++++.+++++|+++++ .++|+ +|+|.+++.++..+
T Consensus 9 ~~~~~~V~~A~~~~~----------~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t-~s~T~~~~~~~~~l----- 72 (361)
T d1m32a_ 9 LTTSRTVKEAMLFDS----------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQ-GSGSYAVEAVLGSA----- 72 (361)
T ss_dssp CCCCHHHHHTTCCCC----------CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEE-SCHHHHHHHHHHHS-----
T ss_pred CCCCHHHHHHhhhhc----------cCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC-CCHHHHHHHHHHHh-----
Confidence 445667766653211 12345567788899999999999998774 36777 55677788887776
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHH-HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+.+++. ++++...++...... +...+..+..+........+.+........ .++++++++++++|
T Consensus 73 ----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~ 138 (361)
T d1m32a_ 73 ----------LGPQDK-VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNA---DPTISHIAMVHSET 138 (361)
T ss_dssp ----------CCTTCC-EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHH---CTTCCEEEEESEET
T ss_pred ----------hhhccc-cceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHh---ccCccceEEEeeec
Confidence 345555 455555555544433 344566766666655444444433333222 16899999999999
Q ss_pred ccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 245 ~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
.||.+.|+++|+++||+||+++++|++|+.|+.++|++++ ++|++++|+|||++||.|+|+++++++. +....|.
T Consensus 139 ~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~---~~D~~~~s~~K~l~gp~G~g~l~~~~~~--~~~~~~~ 213 (361)
T d1m32a_ 139 TTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQK--LAACKGH 213 (361)
T ss_dssp TTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHHH--HTTCTTC
T ss_pred ccccchhhhhhhhhhcccceeeEeecccccCccccccccc---ccceEEeeecccccCCCCceEEEechhh--hhhhccc
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999998 5566666
Q ss_pred ccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR--AALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ 402 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~ 402 (625)
..++.... ....+......+...+|++....+. .++..+. +..+.+.+..+...+++.+++.+... ++.
T Consensus 214 ~~~~~~~~-------~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 284 (361)
T d1m32a_ 214 SRSLSLDL-------YAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELA-KEGGVAARHQRYQQNQRSLVAGMRAL-GFN 284 (361)
T ss_dssp CSCSTTCH-------HHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred cccccccc-------hhhhccccccccccCCCCCchhhhHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHhhc-CCc
Confidence 65543210 1111112223344556777666543 3333332 33345667777888888888888765 555
Q ss_pred EeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 403 VLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 403 v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
+..+. ..+++ +++|.. +. +...+..++.+.|.+ .||.+.+|..+.
T Consensus 285 ~~~~~-~~rs~~v~~~~~-p~------------~~~~~~~~~~~~l~~-~gi~i~~G~~~~------------------- 330 (361)
T d1m32a_ 285 TLLDD-ELHSPIITAFYS-PE------------DPQYRFSEFYRRLKE-QGFVIYPGKVSQ------------------- 330 (361)
T ss_dssp BSSCG-GGBCSSEEEEEC-CC------------CTTCCHHHHHHHHHH-TTEECEECCCSS-------------------
T ss_pred ccCCh-hhcCCcEEEEEC-CC------------CCCCCHHHHHHHHHH-CCcEEECCCcCC-------------------
Confidence 54443 33444 445544 32 123457788898854 799998775442
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
++.+|||...|++++||++++++|++++
T Consensus 331 -----------~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 331 -----------SDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp -----------SCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred -----------CCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 5889999755789999999999999873
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=5.5e-30 Score=275.05 Aligned_cols=399 Identities=10% Similarity=-0.041 Sum_probs=278.4
Q ss_pred CCCC-CChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHH
Q 043646 45 PPHS-KPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMV 123 (625)
Q Consensus 45 ~~~~-~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~ 123 (625)
+|.. .+.+...+.++..+... |+ ....|.....+.+++.+.+.+.+.+.. |. .++...+.++++.
T Consensus 30 ~p~~~~~~~~~~~~i~d~l~~d--------g~-~~~n~asf~~t~~~~~~~~l~~~~~~~---N~--~~~~~~P~~~~lE 95 (450)
T d1pmma_ 30 FPLHEMRDDVAFQIINDELYLD--------GN-ARQNLATFCQTWDDENVHKLMDLSINK---NW--IDKEEYPQSAAID 95 (450)
T ss_dssp CCCSCCCHHHHHHHHHHHGGGS--------CC-GGGBCSCCSCCCCCHHHHHHHHHTTTC---BT--TCTTTSHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHhccC--------CC-ccccccccccCCCCHHHHHHHHHHHhc---CC--CCcccCccHHHHH
Confidence 4444 77788888888876422 22 223444445667788888888776632 33 2344567789999
Q ss_pred HHHHHHHHHHhCCCCCC----cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 124 HEASNYIKRCLGGGQAD----AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~----~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
.++.+++++++|.+..+ ..++|++||.+++..+..+... ++.+....-.+.++ .++++...|.|..++++
T Consensus 96 ~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~-----~~~~~~~~g~~~~~-~~~~~~~~H~s~~Kaa~ 169 (450)
T d1pmma_ 96 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR-----WRKRMEAAGKPTDK-PNLVCGPVQICWHKFAR 169 (450)
T ss_dssp HHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHH-----HHHHHHHHTCCCSC-CEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHH-----HHHHhhhcCCCCCC-ceEEecccHHHHHHHHH
Confidence 99999999999986432 3578866777777666554421 11111111123333 36677789999999999
Q ss_pred HcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHH------HHcCCEEEEeccC
Q 043646 200 QSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLL------HQYGGFACFDFAA 272 (625)
Q Consensus 200 ~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la------~~~g~~vivD~A~ 272 (625)
..|++++.|++++ ++.+|+++|+++++ ++|.+|+.++++|.||.+.|+++|+++| +++|+|+|||+|+
T Consensus 170 ~~gi~~~~v~~~~~~~~~d~~~L~~~i~-----~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~ 244 (450)
T d1pmma_ 170 YWDVELREIPMRPGQLFMDPKRMIEACD-----ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 244 (450)
T ss_dssp HTTCEEEECCCBTTBCSCCHHHHHHHCC-----TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred HcCCCceEeeecCCCCcCcHHHHHHHhh-----hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhh
Confidence 9999999999987 68999999999998 5799999999999999999999888875 5589999999999
Q ss_pred cCCCccccCCCC----CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCC--CCCcccCCceEEeecccccccccccc
Q 043646 273 SGPYVKINLRSR----NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGS--SPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 273 ~~g~~~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~--~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
+++..+++.... ...++|++++|+|||+++|.|+|++++++....... ..+.+.|+...
T Consensus 245 gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~--------------- 309 (450)
T d1pmma_ 245 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIG--------------- 309 (450)
T ss_dssp GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEEE---------------
T ss_pred ccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCcC---------------
Confidence 887765543322 235899999999999999999999999877521111 11111121110
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC-CCCcceEEEEeccCCCC
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS-VKRQAILSFLVYSTTNS 425 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~-~~~~~i~~f~~~~~~~~ 425 (625)
.....++.+...++..-..+......|++.+.++...+++++.++|+++++++++.+.. ..+.++++|...+..
T Consensus 310 ---~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~-- 384 (450)
T d1pmma_ 310 ---TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE-- 384 (450)
T ss_dssp ---ECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTC--
T ss_pred ---CCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCcc--
Confidence 00111222222222211222222567889999999999999999999999999986543 457899999987542
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS 505 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t 505 (625)
...++..++.+.|.+ .|..+....... .. .....+|+++...+|
T Consensus 385 ---------~~~~~~~~l~~~L~~-~Gw~v~~~~~p~--------~~------------------~~~~~lRvvv~~~~t 428 (450)
T d1pmma_ 385 ---------DPGYTLYDLSERLRL-RGWQVPAFTLGG--------EA------------------TDIVVMRIMCRRGFE 428 (450)
T ss_dssp ---------CCSSCHHHHHHHHHT-TTCBCCEEECCT--------TC------------------TTCEEEEEECCTTCC
T ss_pred ---------cCCCCHHHHHHHHHH-cCCeeeccCcCC--------Cc------------------CCcEEEEEEccCCCC
Confidence 234667789999855 688775321110 00 024789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 043646 506 NEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 506 ~edid~ll~aL~~~~~~~~ 524 (625)
++++|.|++.|+++++...
T Consensus 429 ~e~~d~lv~dl~~~v~~l~ 447 (450)
T d1pmma_ 429 MDFAELLLEDYKASLKYLS 447 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987753
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.97 E-value=1.4e-30 Score=275.42 Aligned_cols=364 Identities=13% Similarity=0.091 Sum_probs=253.3
Q ss_pred ccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 043646 81 ADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 81 ld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (625)
|=..+-+..++.|++++.... .++.+..+.++++++++.|++++|+++.+.|+|+ +|+|.++..+...+
T Consensus 20 l~~PGP~~~~~~V~~Am~~~~----------~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~-gsgT~a~ea~~~~l 88 (388)
T d2ch1a1 20 MMGPGPSNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVS-GSAHAGMEAMLSNL 88 (388)
T ss_dssp CCSSSSCCCCHHHHHHTTSCC----------CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHHHHHH
T ss_pred eeeCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEc-CcHHHHHHHHHHHh
Confidence 333344556788888763322 1345778899999999999999999765345565 56777788887776
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
+.++++ +++....|.+.... +...+..++.+...+....+.+..+.++.. .++++++
T Consensus 89 ---------------~~~~~~--vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~ 147 (388)
T d2ch1a1 89 ---------------LEEGDR--VLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL----HQPKCLF 147 (388)
T ss_dssp ---------------CCTTCE--EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH----HCCSEEE
T ss_pred ---------------cccccc--ccccccccccccchhhhhhhcccccccccccccccchhhhhhhhcc----CCcceee
Confidence 467775 66666677666533 344688888888877777788888877764 4799999
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
+++++|.||.+.|+++|+++||++|+++++|+++++|+.++|++++ ++|+++++.|||+++|.|+|+++++++..
T Consensus 148 ~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~---~~d~~~~s~~K~~~gp~G~g~~~~~~~~~-- 222 (388)
T d2ch1a1 148 LTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPKAL-- 222 (388)
T ss_dssp EESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHHHH--
T ss_pred eeecccccccccchhhhcchhccccceeeeeeeecccccccchhcc---CceEEEEccccccCCCCeEEEEeccHHHH--
Confidence 9999999999999999999999999999999999999999999998 99999999999999999999999998862
Q ss_pred CCCCCcccCCceEEeeccccccccccc-cchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYL-EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
....+...++.. +...+. ....+. .........+|+++..+.............+.+....+......+.+..+..
T Consensus 223 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
T d2ch1a1 223 DVIRNRRTKSKV--FYWDLL-LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK 299 (388)
T ss_dssp HHHHTCSSCCSC--GGGCHH-HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCcccc--ccccch-hhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 222111111111 000000 000000 0112223456677766654333322224457777777777666666666654
Q ss_pred CCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 398 NQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
. ++.++......+++ +++|.+.. +++..++.+.|.+++||.+++|..|.
T Consensus 300 ~-~~~~~~~~~~~rs~~v~~~~~p~---------------g~~~~~l~~~l~~~~gI~v~~G~~~~-------------- 349 (388)
T d2ch1a1 300 M-GLDIFVKDPRHRLPTVTGIMIPK---------------GVDWWKVSQYAMNNFSLEVQGGLGPT-------------- 349 (388)
T ss_dssp H-TCCBSSCSGGGBCTTEEEEECCT---------------TCCHHHHHHHHHHHHCBCCBCCCGGG--------------
T ss_pred c-ccccccCCHHHhCCeEEEEECCC---------------CCCHHHHHHHHhhcCCEEEeCCCccc--------------
Confidence 4 23333332244554 56666643 35677898888888899999886543
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEe-cCCCCCHHHHHHHHHHHHHHHHhhhhcccCccc
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRIT-FPYYMSNEEFEFILAALEFIAAYGHRFLPLYHF 532 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis-~~~~~t~edid~ll~aL~~~~~~~~~~~~~y~~ 532 (625)
..+.+||| +++++|.|||++++++|+++++.. -|+|.|
T Consensus 350 ---------------~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~---~~~~~~ 388 (388)
T d2ch1a1 350 ---------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT---HPDYIF 388 (388)
T ss_dssp ---------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH---CTTCCC
T ss_pred ---------------cCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh---CCccCC
Confidence 24789999 789999999999999999998874 345544
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.1e-29 Score=267.93 Aligned_cols=351 Identities=13% Similarity=0.120 Sum_probs=254.8
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG---QADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~---~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
++.|+.|++++.. +.. ++.+..+.+.++++++.++++++.. ..+.|+||+ |+|++++.++..+..
T Consensus 12 ~~v~~~V~~Am~~--------~~~--~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~-sgT~a~~~~~~~l~~- 79 (382)
T d2bkwa1 12 IILSGAVQKALDV--------PSL--GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAG-SGTLGWDIFASNFIL- 79 (382)
T ss_dssp CCCCHHHHHTTSC--------CCC--CTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEES-CTTHHHHHHHHHHSC-
T ss_pred CCCCHHHHHHhCc--------ccC--CCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeC-cHHHHHHHHHHHHHH-
Confidence 4567777776522 111 1245667788889999999999862 222789995 556668887776621
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--HHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEe
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--RQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFS 240 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~ 240 (625)
.+++||+ |++....|++....+ +..|..+..+...+ ....+.+.+++++.. +++++++++
T Consensus 80 -----------~~~~gd~--vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~ 142 (382)
T d2bkwa1 80 -----------SKAPNKN--VLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ----NSYGAVTVT 142 (382)
T ss_dssp -----------TTCSCCE--EEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH----SCCSEEEEE
T ss_pred -----------hcCCCCc--eEEEEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhh----ccchheeee
Confidence 1467886 888888888876443 44688777776544 456888988888875 689999999
Q ss_pred cccCccccccCHHHHHHHHHHc--CCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 241 ACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 241 ~~~n~TG~~~~l~~I~~la~~~--g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
+++|.||...|+++++++|+++ ++++++|++|++|..++|++.+ ++|++++|.|||++||.|+|++++++++ +
T Consensus 143 ~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~---giD~~~~s~~K~l~gP~G~g~l~vs~~~--~ 217 (382)
T d2bkwa1 143 HVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSSRF--M 217 (382)
T ss_dssp SEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECHHH--H
T ss_pred eccccccccccchhhhhhccccccceeeeeeccccccccccccccc---CeeEEeecccccCcCCCchhhhhccHHH--H
Confidence 9999999999999999999876 5999999999999999999998 9999999999999999999999999998 3
Q ss_pred CCCCCcccCCceEEeeccccccccccc-----cchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYL-----EDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~-----~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
....+...++....+.. ....+. .....+...+||++..+. .++++++ ...|.+.+.++.+.+++++
T Consensus 218 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l 291 (382)
T d2bkwa1 218 DYALNDSKNGHVHGYFS----SLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWF 291 (382)
T ss_dssp HHHTCHHHHCCCSCSTT----CHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHH
T ss_pred hhhhhcccCCCcccchh----hhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHH
Confidence 34444444433211110 000000 011234557899887765 4566665 5679999999999999999
Q ss_pred HHhhCCCCcEEEeCCCC-CCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 392 LGRILPNQNIQVLGNTS-VKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~-~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
++.+....++..+...+ ..+. .+++|... ++.++.+.| +++||.+++|..+.
T Consensus 292 ~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~------------------~~~~~~~~L-~~~gi~i~~G~~~~------- 345 (382)
T d2bkwa1 292 KDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA------------------DPPDVIAFL-KSHGVVIAGGIHKD------- 345 (382)
T ss_dssp HHHHHTTTCCEESSCSSSTTBCSSCEEEECS------------------CHHHHHHHH-HHTTEECBCCCCTT-------
T ss_pred HHHhhhcccccccccCchhccCCcEEEEcCC------------------CHHHHHHHH-HHCCeEEECCCChh-------
Confidence 99998776777765432 2233 44555543 256788888 56899999886542
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEe-cCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRIT-FPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis-~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
+.++.+||| +|+..+++|+++++++|+.+...+.
T Consensus 346 ---------------------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 346 ---------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp ---------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred ---------------------hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 024889999 7888889999999999988766554
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=1.9e-27 Score=248.50 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=163.2
Q ss_pred CCcchHHHHHHHHHhhCCCCCCCCCCcchhhH-----HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 043646 86 SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQ-----RMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 86 ~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~-----~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (625)
.++.++.+.+++.++...+ . ...+..+. ....+.+.+++.+|+++|++ ++++| +|+++++..++.++
T Consensus 11 ~~~l~~~a~~a~~~~~~g~-~---~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e---~~~~t-~g~t~a~~~~~~al 82 (364)
T d2e7ja1 11 GGKLTEEARQALLEWGDGY-S---VCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVT-NGAREAKFAVMHSL 82 (364)
T ss_dssp TCCCCHHHHHHHHHC------------------------CCHHHHHHTHHHHHTTSS---EEEEE-SSHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHhcCC-c---hhccccccccccccChHHHHHHHHHHHHHhCcC---EEEEE-CcHHHHHHHHHHHH
Confidence 3567788888887643211 0 00000000 11236777999999999974 67888 67777788877777
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
+++||+ |+++..+|+++..+++..|++++.+|++. ++.+|++++++++++.....++++|+
T Consensus 83 ---------------~~~gd~--Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~ 145 (364)
T d2e7ja1 83 ---------------AKKDAW--VVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLAL 145 (364)
T ss_dssp ---------------CCTTCE--EEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred ---------------hCCCcE--EEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEE
Confidence 578986 99999999999999999999999999865 56899999999998654445678999
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+++++|+||.+.|+++|+++|++||+++++|+||+.|+.++++..+ ++|++++|+||+|++|+++|+++++++.
T Consensus 146 i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~---g~D~~~~S~~K~~~~~g~~g~l~~~~~~ 219 (364)
T d2e7ja1 146 ITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMKEEW 219 (364)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEECTTT
T ss_pred eecCCCCCceeecchhheeccccccchhhccccchhhhhhhccccc---ccceeeeccccccCCCCCEEEEEECHHH
Confidence 9999999999999999999999999999999999999999988887 8999999999999988889999999887
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=6.6e-26 Score=235.48 Aligned_cols=338 Identities=16% Similarity=0.080 Sum_probs=236.5
Q ss_pred eccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 043646 80 YADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEV 159 (625)
Q Consensus 80 Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (625)
||=..+-++.++.|++++.+... ++.+..+.++++++++.++++++++.+ .++|+| |.|.++..++..
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~~~----------~hr~~~f~~i~~~~~~~l~~ll~~~~~-~i~~~g-sgT~a~e~~~~n 69 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARPQL----------HHRTEAAREVFLKARGLLREAFRTEGE-VLILTG-SGTLAMEALVKN 69 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCC----------CTTSHHHHHHHHHHHHHHHHHHTCSSE-EEEEES-CHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeC-chHHHHHHHHHh
Confidence 33334446778899998865331 234567889999999999999998754 778885 556668777766
Q ss_pred hcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH--HHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 160 MGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL--SWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
+ +.+|++ |++....+.+... .++..|.++..+..+....++++++ . ..+++.|
T Consensus 70 l---------------~~~g~~--vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~----~----~~~~~~v 124 (348)
T d1iuga_ 70 L---------------FAPGER--VLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDV----A----KEGYAGL 124 (348)
T ss_dssp H---------------CCTTCE--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTS----C----CSSCSEE
T ss_pred c---------------cccccc--ceeecchHHHHHHHHHHHhcCcccccccccCCCccccccc----c----ccCCCee
Confidence 5 578886 5555555555432 2455788888888766555554332 1 1578999
Q ss_pred EEecccCccccccCHHHHHHHHHHcC--CEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYG--GFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g--~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
+++|.+|.||.+.|+++|+++|++++ +++++|+++++|..+++++.+ ++|+++++.||+++||.|+|++++++++
T Consensus 125 ~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~---~iD~~~~~sqK~l~gppG~~~v~~s~~~ 201 (348)
T d1iuga_ 125 LLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSPRA 201 (348)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccc---cCCEEEeccccceecCCceeeeeechHH
Confidence 99999999999999999999999975 899999999999999999988 8999999999999999999999999998
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
++.++|..+ ..+...++...+.....+||++..+. .++++... ..+.+.. ++.+...+.++.
T Consensus 202 --le~~~~~~~-----------~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~--~~~~~~~-~~~~~~~~~~~~ 265 (348)
T d1iuga_ 202 --LERLKPRGY-----------YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL--PRLEEHL-ALKAWQNALLYG 265 (348)
T ss_dssp --HHTCCCCSS-----------TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG--GGHHHHH-HHHHHHHHHHHH
T ss_pred --Hhhhccccc-----------ccchhhhhhhhccCcccccccchHHHHHHHHHHHHH--HHHhHHH-HHHHHHHHHHhh
Confidence 445544221 11112222222344556788887764 45555442 2344433 233333444554
Q ss_pred hhCCCCcEEEeCCCCCCCcc-eEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC
Q 043646 394 RILPNQNIQVLGNTSVKRQA-ILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF 472 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~-i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~ 472 (625)
.+... ++++... .+.+ +++|.+.. +++..++.+.|. ++||.+.+|..+
T Consensus 266 ~~~~~-gl~~~~~---~~s~~v~~~~~P~---------------g~~~~~~~~~l~-~~gi~i~~G~~~----------- 314 (348)
T d1iuga_ 266 VGEEG-GLRPVPK---RFSPAVAAFYLPE---------------GVPYARVKEAFA-QRGAVIAGGQGP----------- 314 (348)
T ss_dssp HHHHT-TCEESCS---SBCTTCEEEECCT---------------TCCHHHHHHHHH-TTTEECEECCGG-----------
T ss_pred hhhhh-hhccChh---hcCCeEEEEECCC---------------CCCHHHHHHHHH-HCCeEEEcCccc-----------
Confidence 44443 7776643 2343 55666533 346778888885 579999877421
Q ss_pred ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 473 DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 473 ~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++...+||+.-.+++.+|+++++++|++++++
T Consensus 315 ------------------l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 315 ------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp ------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 13468999976688999999999999999876
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.94 E-value=7.6e-25 Score=231.28 Aligned_cols=364 Identities=12% Similarity=0.036 Sum_probs=244.7
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCC-CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHH
Q 043646 42 DHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTA-SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMT 120 (625)
Q Consensus 42 ~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~-~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~ 120 (625)
..++..........+++|+.- .+++-|..+. ..++|+.+.+++.+.+..- .. .|....+..
T Consensus 9 ~~~~s~~~~i~~~a~~~~~~g-------------~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~----~~-~Y~~~~G~~ 70 (388)
T d1j32a_ 9 SVSPSMTLIIDAKAKAMKAEG-------------IDVCSFSAGEPDFNTPKHIVEAAKAALEQG----KT-RYGPAAGEP 70 (388)
T ss_dssp TSCCCSSTTTHHHHHHHHTTT-------------CCCEECCCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCH
T ss_pred cCCcCHHHHHHHHHHHHHHCC-------------CCeEECCCCCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCH
Confidence 344444566677778887653 1223332221 2456789999998877431 11 122222345
Q ss_pred HHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
++.+.+.+++.+..|..- .++|++| +|++++|..++.++ ++|||. |+++.+.|+.+...++
T Consensus 71 ~lR~aia~~~~~~~g~~~~~~~i~it-~G~~~al~~~~~~~---------------~~~gd~--Vlv~~P~y~~~~~~~~ 132 (388)
T d1j32a_ 71 RLREAIAQKLQRDNGLCYGADNILVT-NGGKQSIFNLMLAM---------------IEPGDE--VIIPAPFWVSYPEMVK 132 (388)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEc-CCHHHHHHHHHHHH---------------hCCCCE--EEEcCCCcHHHHHHHH
Confidence 566777777777777642 2389998 89999999999887 578986 9999999999988888
Q ss_pred HcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcC
Q 043646 200 QSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 200 ~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~ 274 (625)
..|++++.++.+. ++.+|+++|+++++ ++++++++++|+||||.+.+ +++|+++|+++|+++|+|++++.
T Consensus 133 ~~~~~~v~~~~~~~~~~~~d~~~l~~~~~-----~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~ 207 (388)
T d1j32a_ 133 LAEGTPVILPTTVETQFKVSPEQIRQAIT-----PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEK 207 (388)
T ss_dssp HTTCEEEEECCCGGGTTCCCHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred HhcCeEEEEecccccccCCCHHHHHHhCC-----CCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhc
Confidence 8999999998765 35799999999887 68999999999999999977 56788889999999999999753
Q ss_pred CCcc----ccCCCCCCC--CCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 275 PYVK----INLRSRNID--GYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 275 g~~~----id~~~~~~~--~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
-... ..+.....+ ...+++.|++|.|+.|+ .+|+++.++++.. .+..
T Consensus 208 ~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~--~~~~------------------------ 261 (388)
T d1j32a_ 208 ILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVK--AATK------------------------ 261 (388)
T ss_dssp CBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHH--HHHH------------------------
T ss_pred ccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHH--HHHH------------------------
Confidence 2211 111111000 12477889999998664 4899998877732 1100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
........++..... ++...........+..+++.++..+.+.+.|.+++++++..|. ++.+.|.-.+.
T Consensus 262 -~~~~~~~~~~~~~q~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~----gg~~l~~~l~~----- 330 (388)
T d1j32a_ 262 -IQGHSTSNVCTFAQY-GAIAAYENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD----GAFYMFPSIAK----- 330 (388)
T ss_dssp -HHHTTTCSCCHHHHH-HHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC----BTTEECCBCGG-----
T ss_pred -hhhhccccccHHHHH-HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCC----ceEEEEEECCC-----
Confidence 000111222222221 1122221111224556667777788899999888888876653 45665544432
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
...+..++++.|.+++||.+.+|..|+ .++++||+++ .+++
T Consensus 331 --------~~~~~~~~~~~ll~~~gV~v~pG~~F~-----------------------------~~~~~Rls~~--~~~e 371 (388)
T d1j32a_ 331 --------TGRSSLDFCSELLDQHQVATVPGAAFG-----------------------------ADDCIRLSYA--TDLD 371 (388)
T ss_dssp --------GTCCHHHHHHHHHHHHCEECEEGGGGT-----------------------------CTTBEEEECC--SCHH
T ss_pred --------CCCCHHHHHHHHHHhCCEEEEeccccC-----------------------------CCCeEEEEEe--CCHH
Confidence 123466788888788999999998764 2489999997 5889
Q ss_pred HHHHHHHHHHHHHHh
Q 043646 508 EFEFILAALEFIAAY 522 (625)
Q Consensus 508 did~ll~aL~~~~~~ 522 (625)
+++..++.|+++++.
T Consensus 372 ~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 372 TIKRGMERLEKFLHG 386 (388)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988765
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.93 E-value=1.9e-25 Score=233.52 Aligned_cols=342 Identities=11% Similarity=0.005 Sum_probs=220.3
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcc
Q 043646 85 ASGRSLRYIEDYIINNVLPFYGNTHTS--DSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGI 162 (625)
Q Consensus 85 ~~~~~p~~v~ea~~~~l~~~~~n~~~~--~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~ 162 (625)
+..+.|+.|+++|.+.+..+..++.+. .++.+..+.++++++++.|++++|+++++.|+|++++++.++..+...+
T Consensus 10 GP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l-- 87 (361)
T d2c0ra1 10 GPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-- 87 (361)
T ss_dssp SSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--
T ss_pred CCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc--
Confidence 346678999999999887654332221 1235678899999999999999999866688998666666666555444
Q ss_pred cccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 163 TVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
+.+++. +++.. |.++...| ...|..++.+..+....++++.+++.+.. .+
T Consensus 88 -------------~~~~~~--~l~~~--~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---- 141 (361)
T d2c0ra1 88 -------------LKEGQT--ANYVM--TGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQ-----DN---- 141 (361)
T ss_dssp -------------CCTTCE--EEEEE--CSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCC-----TT----
T ss_pred -------------ccCCCc--eEEEe--echhhhhhhhhhhhcCceeeeeccccccccchhhhhhhccc-----Cc----
Confidence 456664 33322 33443333 34689999998887777788777765542 22
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
+.+++|.||...|+++|.++|+++|+++++|+++++|+.++|+.++ |+.++++||+++.|++.++++..+.+.
T Consensus 142 ~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~-----di~~~s~~k~~~~~~~~~~~~~~~~~~-- 214 (361)
T d2c0ra1 142 AAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF-----GLVYAGAQKNLGPSGVTVVIVREDLVA-- 214 (361)
T ss_dssp EEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGC-----SEEEEETTTTTCCSSCEEEEEEGGGSS--
T ss_pred ceEEEEecccceecceEEEeeccCCceEEEEeeccccccccccccc-----eeEEEecccccccccCcEEEEEhHHhh--
Confidence 3456788999999999999999999999999999999999999865 666778899998777656555555542
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
...+....... ...+.........+++.....+..+..+.. ...+...+..+.+..+..+.......
T Consensus 215 -~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (361)
T d2c0ra1 215 -ESPKHLPTMLR-----------YDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-ERGGLEGVQQANRKKASLIYDAIDQS 281 (361)
T ss_dssp -SCCTTSCGGGC-----------HHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -hCccccccccc-----------cccccccccccccccceeeehhhhHHHhhh-hccchHHHHHHHHHHHHHhhhhhhhc
Confidence 22111111000 000001111122222333333333333332 22334445555555555555555443
Q ss_pred C-cEEEeCCCCCCCc-ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 399 Q-NIQVLGNTSVKRQ-AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 399 ~-gv~v~~~~~~~~~-~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
. ......+. ..|+ .+++|.+.++ ++..++.+.| +++||.++.|..|.
T Consensus 282 ~~~~~~~~~~-~~rS~~~~~~~~~~~---------------~~~~~~~~~L-~~~GI~~~~G~~~~-------------- 330 (361)
T d2c0ra1 282 GGFYRGCVDV-DSRSDMNITFRLASE---------------ELEKEFVKAS-EQEGFVGLKGHRSV-------------- 330 (361)
T ss_dssp TTSSEESSCG-GGBCSSEEEEECSCH---------------HHHHHHHHHH-HHTTEESCBCCTTT--------------
T ss_pred ccccccCCCh-hhccceEEEEECCCc---------------ccHHHHHHHH-HHCCCEEecCCCcC--------------
Confidence 2 33333332 3343 4566666432 2456788888 56899999886443
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+|||+..+++.|||++|+++|+++.++
T Consensus 331 -----------------g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 331 -----------------GGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp -----------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 34999999999999999999999987654
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=2.6e-24 Score=227.02 Aligned_cols=344 Identities=13% Similarity=0.057 Sum_probs=223.4
Q ss_pred ceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 043646 77 RLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGG--GQADAIIFCGAGTTAAI 153 (625)
Q Consensus 77 ~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~--~~~~~vift~sGttaal 153 (625)
+++-|..+.. .++|+.|.+++.+.+..- .. .|....+..++.+.+.+++.+..+. .++++|++| +|+++++
T Consensus 26 dvi~l~~g~p~~~~p~~v~~~~~~a~~~~----~~-~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t-~G~~~~l 99 (388)
T d1gdea_ 26 DVISLGIGEPDFDTPQHIKEYAKEALDKG----LT-HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVL-LGANQAF 99 (388)
T ss_dssp TCEECCCCSCCSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SSTTHHH
T ss_pred CeEECCCCCCCCCCCHHHHHHHHHHHhcC----cc-CCCCCcCCHHHHHHHHHHHHhhccccCCChheeeec-cCcchHH
Confidence 3444433322 356788999998887431 11 1222222345555555555554543 233378888 8999999
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~ 231 (625)
..++.++ +++||+ |+++.+.|+.+...++..|++++.+|+++ +..+|+++|+++++
T Consensus 100 ~~~~~~l---------------~~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~----- 157 (388)
T d1gdea_ 100 LMGLSAF---------------LKDGEE--VLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT----- 157 (388)
T ss_dssp HHHHTTT---------------CCTTCE--EEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC-----
T ss_pred HHHHHHh---------------cCCCCE--EEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc-----
Confidence 9988776 588986 99999999999888889999999999875 44799999999887
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCC-CCCcEEEEcCCCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNI-DGYDAIFLATHKFLGGP 303 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~-~~~D~v~~S~hK~lggp 303 (625)
++++++++++|+||||.+.+ +++|+++|++||+++++|++++.-.. ...+..... ....+++.|++|.|+.|
T Consensus 158 ~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 237 (388)
T d1gdea_ 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMT 237 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCG
T ss_pred cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCc
Confidence 57999999999999999976 67788899999999999999763211 111111110 12347778999999866
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH-HHHHHHHHhhcCHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR-AALAFWVKEYIGYEVIK 381 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~-aal~~~~~~~~g~~~i~ 381 (625)
+ .+|+++.+++... .+... ......+++...+.+. .++.-.. .....+...
T Consensus 238 GlR~G~ii~~~~~~~--~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 290 (388)
T d1gdea_ 238 GWRLGFVAAPSWIIE--RMVKF------------------------QMYNATCPVTFIQYAAAKALKDER-SWKAVEEMR 290 (388)
T ss_dssp GGCCEEEECCHHHHH--HHHHH------------------------HHTTTCSCCHHHHHHHHHHHTCHH-HHHHHHHHH
T ss_pred cccEEEEEeeccchh--hhhhc------------------------cccccccccccchhhHHHHHhhcc-chhHHHHHH
Confidence 4 4899999887621 11000 0111122233333221 1111000 000122334
Q ss_pred HHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCC
Q 043646 382 KQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCAC 461 (625)
Q Consensus 382 ~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~ 461 (625)
++.......+.+.|... ++.+..| .++.+.|.-.++ .+++..++++.|++++||.+++|..|
T Consensus 291 ~~~~~~~~~~~~~l~~~-~~~~~~p----~gg~fl~~~l~~-------------~~~~~~~~~~~ll~e~gV~v~PG~~F 352 (388)
T d1gdea_ 291 KEYDRRRKLVWKRLNEM-GLPTVKP----KGAFYIFPRIRD-------------TGLTSKKFSELMLKEARVAVVPGSAF 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCCCCC----CBTTEECCBCGG-------------GTCCHHHHHHHHHHHTCEECEEGGGG
T ss_pred HHHHHhhhhhhhhhhhc-cccccCC----CceEEEEEECCC-------------CCCCHHHHHHHHHHhCCEEEEechhh
Confidence 44445566666777654 4444433 345665554432 23457788888878899999999887
Q ss_pred CchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 462 AGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+.. .++++|||++ .++++++..++.|++++++
T Consensus 353 ~~~---------------------------~~~~iRis~~--~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 353 GKA---------------------------GEGYVRISYA--TAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp CGG---------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 521 2489999997 4789999999999998876
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=4.2e-24 Score=223.78 Aligned_cols=321 Identities=15% Similarity=0.053 Sum_probs=222.8
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
.++|+.+.+++.+.+......+.. .| ..++|+.|+++++.+++ +|++| +|+++++..++.++
T Consensus 37 ~~~p~~i~~al~~~l~~~~~Y~~~----~G------~~elr~aiA~~~~~~~~-~Iiit-~G~~~al~~~~~~l------ 98 (368)
T d1v2da_ 37 NPPPPFLLEAVRRALGRQDQYAPP----AG------LPALREALAEEFAVEPE-SVVVT-SGATEALYVLLQSL------ 98 (368)
T ss_dssp SCCCHHHHHHHHHHTTTSCSCCCT----TC------CHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHhhcccCCCCC----cC------CHHHHHHHHhhcccCCc-ceeec-cchHHHHHHHhhcc------
Confidence 357789999998887543222221 11 34578999999999887 89998 89999999998887
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC---CCCCCHHHHHHHHHHhhhCCCCeEEEEeccc
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD---NGLLDIEALRSQLELYKAAKRPMLGSFSACS 243 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~ 243 (625)
+.++|. |+++.+.|+.+...++..|.+++.++++. .+.+|++.++++++ +.++++++++|+
T Consensus 99 ---------~~~~d~--v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~~~~p~ 162 (368)
T d1v2da_ 99 ---------VGPGDE--VVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-----PRTRALLLNTPM 162 (368)
T ss_dssp ---------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-----TTEEEEEEESSC
T ss_pred ---------cccccc--ccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhc-----cCceEEEEcCCC
Confidence 477875 88888999999888999999999888753 35799999999887 578999999999
Q ss_pred CccccccC---HHHHHHHHHHcCCEEEEeccCcCCCccccCCCC--CCCCCcEEEEcCCCCCCCCCC-ceEEEEeccccc
Q 043646 244 NVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKINLRSR--NIDGYDAIFLATHKFLGGPGT-PGILLISKALYQ 317 (625)
Q Consensus 244 n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~--~~~~~D~v~~S~hK~lggp~g-~G~l~v~~~~~~ 317 (625)
||||.+.+ +++|+++|++||+++++|++++........... ......+++.+++|.++.|+. +|+++.++++..
T Consensus 163 NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~ 242 (368)
T d1v2da_ 163 NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMP 242 (368)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHH
T ss_pred CcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccc
Confidence 99999987 777899999999999999987654433222211 011234556677777776643 899988877621
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
.+. ........++....+.. .+++.... .....+.++++.++.++++.+.|+
T Consensus 243 --~~~------------------------~~~~~~~~~~~~~~q~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~l~ 295 (368)
T d1v2da_ 243 --RLA------------------------GMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRRRRDLLAGGLR 295 (368)
T ss_dssp --HHH------------------------HHHHHHTSSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhh------------------------hhhhcccccccccccccccccccccc-chhhHHHHHHHHHHhhhhhhhhHH
Confidence 110 00111122333333322 23333321 112356667777778888999998
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
++ |+++..+. ++.+.|.-.++. +..+.| +++||.+++|..|...
T Consensus 296 ~~-g~~~~~p~----g~~~~~~~l~~~------------------~~~~ll-~~~gI~v~pg~~F~~~------------ 339 (368)
T d1v2da_ 296 AM-GLRVYVPE----GTYFLMAELPGW------------------DAFRLV-EEARVALIPASAFYLE------------ 339 (368)
T ss_dssp HT-TCCEECCS----BSSEEEEECTTC------------------CHHHHH-HHTCEECEEGGGGCSS------------
T ss_pred hc-CcEEecCC----ceeEEEEeCCcc------------------HHHHHH-HhCCEEEEechhhCCC------------
Confidence 76 88887763 355555554432 234445 5689999999876421
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
+..++++|||++ .++++++..++.|+++
T Consensus 340 -------------~~~~~~iRis~~--~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 340 -------------DPPKDLFRFAFC--KTEEELHLALERLGRV 367 (368)
T ss_dssp -------------SCCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 012589999986 5789999999999876
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.92 E-value=5.3e-24 Score=223.14 Aligned_cols=327 Identities=12% Similarity=0.115 Sum_probs=229.8
Q ss_pred hHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhh
Q 043646 90 LRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMR 169 (625)
Q Consensus 90 p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (625)
.+.+.++..+.+..+..+. +.+..-.+...+.+++++.+++++|.+. .++|. +|..+++..+.....
T Consensus 61 ~p~v~~a~~~al~~yG~gs--~~Sr~~~G~~~~h~~LE~~lA~~~g~e~--all~~-sG~~An~~~i~~l~~-------- 127 (396)
T d2bwna1 61 HPVVLAAMHEALEAVGAGS--GGTRNISGTTAYHRRLEAEIAGLHQKEA--ALVFS-SAYNANDATLSTLRV-------- 127 (396)
T ss_dssp CHHHHHHHHHHHHHHCSCC--CSBTTTBCCBHHHHHHHHHHHHHTTCSE--EEEES-CHHHHHHHHHHHHHH--------
T ss_pred CHHHHHHHHHHHHHhCCCc--cccccccCCchHHHHHHHHHHHHhCCCc--eeeee-cchHHHHHHHHHHhc--------
Confidence 4578888888886643222 2233334456788999999999999863 46665 899997776644321
Q ss_pred hhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc
Q 043646 170 DKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY 249 (625)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~ 249 (625)
..+++ +|+.....|.|...+++..+++++.++.+ |++++++.+... ...+.++|++..+.+++|.+
T Consensus 128 ------~~~~d--~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~-~~~~~~~iv~egvySmdGd~ 193 (396)
T d2bwna1 128 ------LFPGL--IIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAAD-DPAAPKLIAFESVYSMDGDF 193 (396)
T ss_dssp ------HSTTC--EEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHS-CTTSCEEEEEESBCTTTCCB
T ss_pred ------ccCCC--ceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhh-cccCceeEEEEeeccCcccc
Confidence 24556 68889999999999999999999988755 788888887642 22456899999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCC-----CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc
Q 043646 250 SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR-----NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS 324 (625)
Q Consensus 250 ~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~-----~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~ 324 (625)
.|+++|.+++++||++++||+||++|...-+-+.. ..+.+|+++.++.|.||+.+ |+++.+++... .+
T Consensus 194 apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G--g~v~~~~~~i~--~l--- 266 (396)
T d2bwna1 194 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAASARMVD--AV--- 266 (396)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEECHHHHH--HH---
T ss_pred cccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc--cccchhHHHHH--HH---
Confidence 99999999999999999999999998865332211 11257999999999998665 78888877632 11
Q ss_pred ccCCceEEeeccccccccccccchhh--hhcCCC-hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE
Q 043646 325 TCGGGTVNYVNAFDEKDTLYLEDIEE--RENGGT-PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI 401 (625)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~--~~~~gt-~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv 401 (625)
..... .|.... |...+.+.+++++.. ....+..+++.+.+.+++.+.|..+ ++
T Consensus 267 ---------------------~~~~~~~ifStalpp~~~aa~~~al~i~~--~~~~~~~r~~l~~~~~~~~~~l~~~-g~ 322 (396)
T d2bwna1 267 ---------------------RSYAPGFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKAL-GM 322 (396)
T ss_dssp ---------------------HHHCHHHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred ---------------------HhhcchhhhcccCcHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 00011 122222 333444455555542 1123345666667788888888765 55
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHH
Q 043646 402 QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIR 481 (625)
Q Consensus 402 ~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~ 481 (625)
.+... ..||+.+.+.... ....+++.|++++||.+.+...+++|.+
T Consensus 323 ~~~~~----~spIvpv~ig~~~---------------~~~~~a~~lL~e~Gi~v~~i~~PtVp~g--------------- 368 (396)
T d2bwna1 323 PIIDH----GSHIVPVVIGDPV---------------HTKAVSDMLLSDYGVYVQPINFPTVPRG--------------- 368 (396)
T ss_dssp CBCCC----SSSCEEEECCCHH---------------HHHHHHHHHHHHHCEECCEECTTTSCTT---------------
T ss_pred CcCCC----CCCEEEEEeCCHH---------------HHHHHHHHHHHhCCEEEEEECCCcCCCC---------------
Confidence 44432 4588887764321 1346777766668999987776664422
Q ss_pred HHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 482 SAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 482 ~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+||+++..+|++|||+++++|+++
T Consensus 369 -----------~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 369 -----------TERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp -----------CCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred -----------CeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 367999999999999999999999975
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.2e-23 Score=219.07 Aligned_cols=335 Identities=14% Similarity=0.074 Sum_probs=234.0
Q ss_pred eccCCCC---Cc-chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 043646 80 YADHTAS---GR-SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKR 155 (625)
Q Consensus 80 Yld~~~~---~~-~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~ 155 (625)
|+|.++. +. ..+.+.+++.+.+.++..++. .+....+..+.+.++++.|++++|.+ ..+++++|..+++..
T Consensus 40 ~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~--~sr~~~g~~~~~~~lE~~LA~~~g~e---~al~~~SG~~an~~~ 114 (383)
T d1bs0a_ 40 YLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSG--GSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQAV 114 (383)
T ss_dssp EEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCC--SBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred EEEEEcccccccCCCHHHHHHHHHHHHHhCCCCC--ccccccCcchHHHHHHHHHHHhcCCC---ceEEecccchhhHHH
Confidence 5555443 32 256788888888866532222 23333345678899999999999975 334445888886665
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCe
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
+ .++ ..+++ .|++....|.+...+.+..+++++.++.+ |+++|++.+.+ ..++.+
T Consensus 115 i-~al---------------~~~~d--~v~~d~~~h~si~~g~~~~~~~~~~~~hn-----d~~~le~~l~~--~~~~~~ 169 (383)
T d1bs0a_ 115 I-AAM---------------MAKED--RIAADRLSHASLLEAASLSPSQLRRFAHN-----DVTHLARLLAS--PCPGQQ 169 (383)
T ss_dssp H-HHH---------------CCTTC--EEEEETTCCHHHHHHHHTSSSEEEEECTT-----CHHHHHHHHHS--CCSSCE
T ss_pred H-Hhh---------------cCCCc--eEEeeccccHHHhhccccCCCcceEecch-----HHHHHHHHhcc--cCCCce
Confidence 5 333 35666 59999999999999999899999888854 89999999874 234578
Q ss_pred EEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
+|+++.+.+++|.+.|+++|.++|++||++++||+||+.|....+-... .....|+++.++.|.+|+++ |++..+
T Consensus 170 ~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G--g~v~~~ 247 (383)
T d1bs0a_ 170 MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG--AAVLCS 247 (383)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC--EEEEEC
T ss_pred EEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc--cccccc
Confidence 9999999999999999999999999999999999999998775543311 11256788889999998665 677777
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC-CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG-GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
....+ .++.. + . ...+.. ..|+..+.+.+++++. +....+...++...+..++
T Consensus 248 ~~~~~--~l~~~--~-~-------------------~~~~s~~~~p~~~aa~~~a~~~~--~~~~~~~~~~~l~~~~~~~ 301 (383)
T d1bs0a_ 248 STVAD--YLLQF--A-R-------------------HLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLAALITRF 301 (383)
T ss_dssp HHHHH--HHHHH--C-H-------------------HHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHH
T ss_pred hhHHH--HHHhh--c-h-------------------hhhhcccccchHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHH
Confidence 66521 11000 0 0 111111 2234444445555554 3334556777888889999
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
++.|.++ ++.+... ..+|+...+.... ....+.+.|.+ +||.+.+..++++|.+
T Consensus 302 ~~~l~~~-g~~~~~~----~s~Ii~v~~g~~~---------------~a~~~~~~L~~-~Gi~v~~~~~PtVp~g----- 355 (383)
T d1bs0a_ 302 RAGVQDL-PFTLADS----CSAIQPLIVGDNS---------------RALQLAEKLRQ-QGCWVTAIRPPTVPAG----- 355 (383)
T ss_dssp HHHHTTS-SCEECSC----CSSBCCEEEESHH---------------HHHHHHHHHHH-TTEECCEECTTSSCTT-----
T ss_pred HHHHHhc-CCccCCC----CCCEEEEEECCHH---------------HHHHHHHHHHH-CCceEEEEcCCCCCCC-----
Confidence 9999987 5666543 2466555553211 13478888866 6999987776654432
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+||+++.++|++|||+++++|+.+
T Consensus 356 ---------------------~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 356 ---------------------TARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp ---------------------CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ---------------------CceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 367999999999999999999999864
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=3.7e-24 Score=230.06 Aligned_cols=339 Identities=11% Similarity=0.054 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH
Q 043646 118 RMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (625)
....+..++.+++++++|.+.....++|++|+.+++.+++.++. .+ ..+++ +|+++...|+|+..+
T Consensus 91 ~~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~--------~~----~~~~~--~vi~~~~~H~s~~~a 156 (445)
T d3bc8a1 91 LLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR--------HK----RPKAK--YIIWPRIDQKSCFKS 156 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHH--------HH----CTTCC--EEEEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHH--------Hh----CCCCC--EEEEcCcccHHHHHH
Confidence 34567778999999999998765677776666565555444431 11 12333 699999999999999
Q ss_pred HHHcCCeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcC
Q 043646 198 WRQSLAEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 198 ~~~~G~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~ 274 (625)
++..|++++.|+. ++++.+|+++|+++|++.. .+++.+|++++++|++|.+.|+++|+++||+||+++|+|+|++.
T Consensus 157 ~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~-~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~ 235 (445)
T d3bc8a1 157 MVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG-PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGL 235 (445)
T ss_dssp HHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC-GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTT
T ss_pred HHHcCCeeEEEEeeccCcccccCHHHHHHHHHhcc-ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchh
Confidence 9999999888753 5568999999999998531 23588999999999999999999999999999999999999987
Q ss_pred CCccccC---CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 275 PYVKINL---RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 275 g~~~id~---~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
+.....- ......++|++++|+||++++|.|.|++++++... ++.+.+.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~-~~~~~~~~~~~----------------------- 291 (445)
T d3bc8a1 236 QSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF-IQDISKMYPGR----------------------- 291 (445)
T ss_dssp TCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHH-HHHHHHHSCSC-----------------------
T ss_pred hhhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHH-HHHHHHHHhhc-----------------------
Confidence 6532110 01112368999999999999999989998876552 11111111110
Q ss_pred hcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC---cEEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 352 ENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ---NIQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 352 ~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~---gv~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
..+++..... +++..+ ...+...+.++...+++++.+.|.++. +..+.... ..+...+.......
T Consensus 292 -~~~~~~~~~~--~~~~~~--g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~---~~~~~~~~~l~~~~---- 359 (445)
T d3bc8a1 292 -ASASPSLDVL--ITLLSL--GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP---HNPISLAMTLKTID---- 359 (445)
T ss_dssp -BCSHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT---TCSSEEEEECTTTS----
T ss_pred -ccCcchHHHH--HHHHHH--hhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCC---CCCcceEEEeeecc----
Confidence 1122222221 222222 334556666677777888887776542 34444322 11222222221110
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCch---hhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGP---YGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS 505 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t 505 (625)
.....+..++...|.+ .||....++.+... .++.+.+.+. ..+.....++|++++.++|
T Consensus 360 -----~~~~~~~~~l~~~L~~-~gI~~~~~~~~~~~~~i~~~~~~~~g~------------~~~~~~~~~i~i~~~~~~T 421 (445)
T d3bc8a1 360 -----GHHDKAVTQLGSMLFT-RQVSGARAVPLGNVQTVSGHTFRGFMS------------HADNYPCAYLNAAAAIGMK 421 (445)
T ss_dssp -----SSSSCHHHHHHHHHHH-TTCCSCEEECSCCEEEETTEEEETTTT------------TSSCCSSCEEEEECCTTCC
T ss_pred -----ccCCCCHHHHHHHHHH-cCCCcceeeccccccchhhhhhhhcCC------------CCccCCCCeEEEeCcCCCC
Confidence 1122344567777744 68765444443321 1111111110 0122234679999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 043646 506 NEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 506 ~edid~ll~aL~~~~~~~~~ 525 (625)
++|||+++++|++++++..+
T Consensus 422 ~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 422 MQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987654
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=5.9e-23 Score=217.01 Aligned_cols=364 Identities=14% Similarity=0.085 Sum_probs=246.3
Q ss_pred hHHHHHHHHHhhcC---------CCccccCCCCCCceEeccCCCC---Ccc-hHHHHHHHHHhhCCCCCCCCCCcchhhH
Q 043646 51 SEEKLAWLRSQIIG---------NDVEFDYSFGKRRLTYADHTAS---GRS-LRYIEDYIINNVLPFYGNTHTSDSYVGQ 117 (625)
Q Consensus 51 ~~~~~~~lr~~~~~---------~~~~~~~p~g~~~~~Yld~~~~---~~~-p~~v~ea~~~~l~~~~~n~~~~~~~~~~ 117 (625)
.+..++.+|++-.- .+..+....|+ -|+|.++. |.. .+.|.+++.+.+.++..++.. +....
T Consensus 12 ~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~---~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~--sr~~~ 86 (401)
T d1fc4a_ 12 LTNDLETARAEGLFKEERIITSAQQADITVADGS---HVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMAS--VRFIC 86 (401)
T ss_dssp HHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSC---EEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCS--CHHHH
T ss_pred HHHHHHHHHHcCCCCcceeccCCCCCeEEecCCC---EEEEEEccccccccCCHHHHHHHHHHHHHhCCCccc--ceeec
Confidence 35677777776321 11222222332 26666542 333 678999988888655333322 33333
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH
Q 043646 118 RMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (625)
+..+..+++++.+++++|.+ .++++++|+.+++..+. ++ ..++| +|++....|.+...+
T Consensus 87 g~~~~~~~lE~~lA~~~g~e---~al~~~SG~~An~~~i~-~l---------------~~~~d--~i~~d~~~h~s~~~G 145 (401)
T d1fc4a_ 87 GTQDSHKELEQKLAAFLGME---DAILYSSCFDANGGLFE-TL---------------LGAED--AIISDALNHASIIDG 145 (401)
T ss_dssp CCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHTTHH-HH---------------CCTTC--EEEEETTCCHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhcCC---ceEEecchhhhhHHHHH-Hh---------------cCCCc--EEEeCCcchHHHHcc
Confidence 34677889999999999985 34555688888766553 33 25666 599999999999999
Q ss_pred HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCC
Q 043646 198 WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (625)
Q Consensus 198 ~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~ 276 (625)
+...++++..++.. |.+++++++..... .....+|++.++.++.|.+.|+++|.++|++||+++++|+||++|.
T Consensus 146 ~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~ 220 (401)
T d1fc4a_ 146 VRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF 220 (401)
T ss_dssp HHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTT
T ss_pred ccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhcccc
Confidence 99889998887743 78888887765332 3456799999999999999999999999999999999999999876
Q ss_pred ccccCCC----C-CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhh
Q 043646 277 VKINLRS----R-NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEER 351 (625)
Q Consensus 277 ~~id~~~----~-~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~ 351 (625)
....-.. . ..+.+|+++.++.|.|||+.| |++..++++.. .++ .....
T Consensus 221 ~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g~~~~~~--~l~------------------------~~~~~ 273 (401)
T d1fc4a_ 221 VGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAARKEVVE--WLR------------------------QRSRP 273 (401)
T ss_dssp SSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEECHHHHH--HHH------------------------HHCHH
T ss_pred ccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccCCHHHHH--HHH------------------------cCChh
Confidence 5432211 0 123689999999999987765 88888877632 110 00111
Q ss_pred hcCCC---hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCc
Q 043646 352 ENGGT---PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPE 428 (625)
Q Consensus 352 ~~~gt---~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~ 428 (625)
+..++ |.....+.++++.. . ..+.++++.+.+.+++++.+... ++.+.+. ..|++.+.+....
T Consensus 274 ~~~s~~l~p~~~~aa~~~l~~~---~-~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~----~~pIv~v~~~~~~----- 339 (401)
T d1fc4a_ 274 YLFSNSLAPAIVAASIKVLEMV---E-AGSELRDRLWANARQFREQMSAA-GFTLAGA----DHAIIPVMLGDAV----- 339 (401)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHH---H-TCHHHHHHHHHHHHHHHHHHHHT-TCCBCCS----SSSEEEEEEECHH-----
T ss_pred hhhcCCCCHHHHHHHHhhhccc---c-cCHHHHHHHHHHHHHHHhhhccc-CCccCCC----CCCEEEEEECCHH-----
Confidence 11222 22222223333322 1 23566788888899999998876 5544433 3577766664321
Q ss_pred cccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 429 NMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 429 ~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
....+.+.|.+ .||.+.+-..++.|. ....+|++++..+|++|
T Consensus 340 ----------~a~~~~~~L~~-~Gi~v~~i~~PtVp~--------------------------g~~~lRi~~~a~hT~ed 382 (401)
T d1fc4a_ 340 ----------VAQKFARELQK-EGIYVTGFFYPVVPK--------------------------GQARIRTQMSAAHTPEQ 382 (401)
T ss_dssp ----------HHHHHHHHHHH-TTEECCEECTTSSCT--------------------------TCEEEEEECCTTCCHHH
T ss_pred ----------HHHHHHHHHHH-CCceEEeECCCCCCC--------------------------CCceEEEEECCCCCHHH
Confidence 13468888866 699998655544332 13569999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 043646 509 FEFILAALEFIAAYG 523 (625)
Q Consensus 509 id~ll~aL~~~~~~~ 523 (625)
||+++++|+++.++.
T Consensus 383 Id~~v~al~ev~~~l 397 (401)
T d1fc4a_ 383 ITRAVEAFTRIGKQL 397 (401)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998774
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=1.1e-23 Score=221.70 Aligned_cols=328 Identities=14% Similarity=0.058 Sum_probs=216.7
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~ 164 (625)
.++|+.|.+++.+.+.. ... .|....+..++.+.+.+++++..|.+ ++ +|++| +|++.+|..++.++
T Consensus 43 ~~~p~~i~~a~~~~~~~----~~~-~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~-~i~it-~G~~~al~~~~~~l---- 111 (382)
T d1b5pa_ 43 FDTPEHVKEAARRALAQ----GKT-KYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVT-VGGSQALFNLFQAI---- 111 (382)
T ss_dssp SCCCHHHHHHHHHHHHT----TCC-SCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEE-SHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHhc----CCc-CCCCCCCCHHHHHHHHhhhhhhcccccccc-cceec-CCHHHHHHHHHHHh----
Confidence 35678999999887743 111 12222334566666667776666654 44 89998 89999999999888
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecc
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSAC 242 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~ 242 (625)
+++||. |+++.+.|+.+...++..|++++.+++++ +..+|+++++++++ ++++++++++|
T Consensus 112 -----------~~~gd~--vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~~~i~~~~P 173 (382)
T d1b5pa_ 112 -----------LDPGDE--VIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT-----PRTKALVVNSP 173 (382)
T ss_dssp -----------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC-----TTEEEEEEESS
T ss_pred -----------CCCCCE--EEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC-----CCCeEEEECCC
Confidence 578986 99999999999888899999999999865 35789999998886 67899999999
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-cccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEecccc
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-KINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALY 316 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~ 316 (625)
+||||.+.+ +++|+++|++||+++++|++++.-.. .-..... ......+++.|++|.|+.|+ .+|+++.++++.
T Consensus 174 ~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i 253 (382)
T d1b5pa_ 174 NNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVI 253 (382)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHH
Confidence 999999977 67788999999999999999763211 1001111 01133467789999998664 489999888763
Q ss_pred ccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH-HHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 317 QLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR-AALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~-aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
+ .+.. .......+++...+.+. +++........-.+..++..+..++.+.+.+
T Consensus 254 ~--~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 307 (382)
T d1b5pa_ 254 K--AMAS------------------------VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGL 307 (382)
T ss_dssp H--HHHH------------------------HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHH------------------------HHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHH
Confidence 2 1100 00111122223322221 1111000011112344445555566677777
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
... ++++..| .++.+.|.-..+. ..+...+.+.|.+ +||.+++|..|+
T Consensus 308 ~~~-g~~~~~p----~gg~~~~~~~~~~-------------~~~~~~~~~~l~e-~gV~v~PG~~F~------------- 355 (382)
T d1b5pa_ 308 TAL-GLKAVRP----SGAFYVLMDTSPI-------------APDEVRAAERLLE-AGVAVVPGTDFA------------- 355 (382)
T ss_dssp HHH-TCCBCCC----SBTTEEEEECTTT-------------CSSHHHHHHHHHH-TTEECEESGGGT-------------
T ss_pred hhc-CCeEecC----CceEEEeEeCCCC-------------CCCHHHHHHHHHH-CCEEEEeCcccC-------------
Confidence 654 5665544 4566666544322 2346678888865 799999998765
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++++||+++ .++++++..++.|+++
T Consensus 356 ----------------~~~~iRis~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 356 ----------------AFGHVRLSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp ----------------CTTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred ----------------CCCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence 2489999996 4788888888887654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=7.8e-25 Score=227.64 Aligned_cols=344 Identities=13% Similarity=0.031 Sum_probs=220.7
Q ss_pred CCCcchHHHHHHHHHhhCCCCCCCCCC---cchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhc
Q 043646 85 ASGRSLRYIEDYIINNVLPFYGNTHTS---DSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMG 161 (625)
Q Consensus 85 ~~~~~p~~v~ea~~~~l~~~~~n~~~~---~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~ 161 (625)
+....|++|++++.+.+..+..+ +.+ .++.+..+.++++++|+.|++++|+++++.|+|+++++++++..+...+
T Consensus 8 GP~~~p~~Vl~a~~~~~~~~~~~-~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~- 85 (360)
T d1bjna_ 8 GPAMLPAEVLKQAQQELRDWNGL-GTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI- 85 (360)
T ss_dssp SSCCCCHHHHHHHHHTSSSGGGS-SSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-
T ss_pred CCcCCCHHHHHHHHHHHhhhccc-CccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc-
Confidence 33567999999999988765432 221 1345678889999999999999999876578888555555444433332
Q ss_pred ccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH--HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEE
Q 043646 162 ITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS--WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSF 239 (625)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~ 239 (625)
..+++ ++++....+...... .+..|..++.+..+.+...+.+.+++.+. .+++++++
T Consensus 86 --------------~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~v 144 (360)
T d1bjna_ 86 --------------LGDKT--TADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ-----LSDNAAYM 144 (360)
T ss_dssp --------------CTTCC--EEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC-----CCSSCSCE
T ss_pred --------------ccccc--ccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc-----cCCceeEE
Confidence 34455 355543333222211 22346666666555444555555555444 57889999
Q ss_pred ecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccC
Q 043646 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLG 319 (625)
Q Consensus 240 ~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~ 319 (625)
.+.+|.||...|+..+. ++.+++++++|++++.+..++|.. ++|++++++||++++|.|.|++++++... .
T Consensus 145 ~~~~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~-----~~dv~~~ss~k~~~~~~~~~~~~~~~~~~--~ 215 (360)
T d1bjna_ 145 HYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDVS-----RYGVIYAGAQKNIGPAGLTIVIVREDLLG--K 215 (360)
T ss_dssp EECSEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCGG-----GCSEEEEETTTTTSSTTCEEEEEEGGGCS--C
T ss_pred EecccccccCcccccee--cccccceeeeeeeccccceeeeec-----cceeEEEEcccccccCCCceeEeeehhhh--h
Confidence 99999999998887764 567899999999999998888876 56999999999999999888888877762 2
Q ss_pred CCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
........+ .+...........++...... ...+........+.+...++.+..+.++...+...
T Consensus 216 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (360)
T d1bjna_ 216 ANIACPSIL--------------DYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNS 281 (360)
T ss_dssp CCTTSCGGG--------------CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCcch--------------hhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 221111110 001111111122222222221 11111122233455666666777677777766665
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~ 478 (625)
....+..+....+..+++|.+.++ .+..++.+.| +++||.++.|..|.
T Consensus 282 ~~~~~~~~~~~rs~~v~~f~~~~~---------------~~~~~~~~~l-~~~Gi~~~~G~~~~---------------- 329 (360)
T d1bjna_ 282 DFYRNDVAKRNRSRMNVPFQLADS---------------ALDKLFLEES-FAAGLHALKGHRVV---------------- 329 (360)
T ss_dssp SSEECCBCGGGBCSSEEEEEESSG---------------GGHHHHHHHH-HHTTEECCBCCTTT----------------
T ss_pred ccccccCCcccccceEEEEEcCCc---------------ccHHHHHHHH-HHCCCEeecCCCcc----------------
Confidence 444443333234556788887542 3466788888 56899998875443
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
|.+|||+..++|+|||++|+++|+++.+
T Consensus 330 ---------------g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 330 ---------------GGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp ---------------CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ---------------CeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 4489999999999999999999999764
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.92 E-value=8.4e-25 Score=228.04 Aligned_cols=349 Identities=11% Similarity=-0.021 Sum_probs=213.8
Q ss_pred eEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCc---chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 043646 78 LTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSD---SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIK 154 (625)
Q Consensus 78 ~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~---~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~ 154 (625)
.+|.-+++..+.|++|++++.+.+..+. +.+.+. ++.+..+.++++++|+.|++++|++++..|+|+ +|++.+..
T Consensus 3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~-~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~-~gt~~~~~ 80 (360)
T d1w23a_ 3 QVFNFNAGPSALPKPALERAQKELLNFN-DTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFL-QGGASLQF 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHH
T ss_pred ceeEeCCCCcCCCHHHHHHHHHHHHhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEe-CCcHHHHH
Confidence 3576666778889999999999886653 222211 235677889999999999999999876567777 66666555
Q ss_pred HHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH--HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 155 RLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW--RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
.++.... ..+++. +++....|.+..... ...+..++.+.........++.++.
T Consensus 81 ~~~~~~~--------------~~~~~~--v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 135 (360)
T d1w23a_ 81 TMLPMNL--------------LTKGTI--GNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSE--------- 135 (360)
T ss_dssp HHHHHHH--------------CCTTCE--EEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGG---------
T ss_pred HHHHhhh--------------cccCcc--cceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhh---------
Confidence 4444331 344553 444433333332222 2245555555543322223333322
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEe
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLIS 312 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~ 312 (625)
..+.+.+.+++|.||.+.|+++|+++||++|+++++|++|++|+.++|++++ ++|+++++.||++ |++.|+++.+
T Consensus 136 ~~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~---~vd~~~~~~~k~~--~~~~~~~~~~ 210 (360)
T d1w23a_ 136 FQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQF---GMIYAGAQKNLGP--SGVTVVIVKK 210 (360)
T ss_dssp CCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGC---SEEEEETTTTTSC--TTCEEEEEEH
T ss_pred cccccccceeEecCCccccceeeeeccccceeeEEeeccccccccccccccc---cceEEeecccccc--CCcceeeEec
Confidence 3333445678889999999999999999999999999999999999999988 7888888777764 5555777766
Q ss_pred ccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 043646 313 KALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIES 390 (625)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (625)
+.. .....+...++.. ...........++..... ...++..+. +..+...+.++.+.....
T Consensus 211 ~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 273 (360)
T d1w23a_ 211 DLL--NTKVEQVPTMLQY--------------ATHIKSDSLYNTPPTFSIYMLRNVLDWIK-DLGGAEAIAKQNEEKAKI 273 (360)
T ss_dssp HHH--CSCCTTCCGGGCH--------------HHHHHTTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred hhh--hcccccCCcchhh--------------hhhhhhhhhcccccceeeechhHHHHHHh-hhhhhHHHHHHHHHHHHH
Confidence 655 2222111111110 000011112223322222 122222222 233344444555544555
Q ss_pred HHHhhCCCCcEEEeCCCCCCC-cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhh
Q 043646 391 ALGRILPNQNIQVLGNTSVKR-QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTL 469 (625)
Q Consensus 391 l~~~L~~l~gv~v~~~~~~~~-~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~ 469 (625)
.............+......| ..+++|.+.++ .+..++.+.| +++||.++.|..|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~---------------~~~~~~~~~l-~~~GI~~~~G~~~~------- 330 (360)
T d1w23a_ 274 IYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNE---------------ELNQQFLAKA-KEQGFVGLNGHRSV------- 330 (360)
T ss_dssp HHHHHHTTTTSSEESSCGGGBCSSEEEEECSSH---------------HHHHHHHHHH-HHTTEESCBCCTTT-------
T ss_pred HHHHHhhcccccccCCChhhcceeEEEEEcCCC---------------ccHHHHHHHH-HHCCCeeeeCCCcc-------
Confidence 554444433333333322344 45788877542 2345778777 55899999887664
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 470 LAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 470 l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
|.+|+|+..++|.|||++|++.|+++.++
T Consensus 331 ------------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 331 ------------------------GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp ------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 34899998888999999999999987654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=6.7e-24 Score=227.30 Aligned_cols=313 Identities=13% Similarity=0.033 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH
Q 043646 119 MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW 198 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (625)
...+..++..++++++|.+.. . .++.+|+++++..++.++. . ..+++ +|+++...|+|+.+++
T Consensus 111 ~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~t~~~~~~~l~a~r--------~-----~~~~~--~vi~s~~~H~s~~k~~ 173 (434)
T d2z67a1 111 MYALTNKILESFFKQLGLNVH-A-IATPISTGMSISLCLSAAR--------K-----KYGSN--VVIYPYASHKSPIKAV 173 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE-E-EEESSCHHHHHHHHHHHHH--------H-----HHCCC--EEEEECCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcc-e-eecCcHHHHHHHHHHHHHH--------H-----hhcCc--eEEEeccCCHHHHHHH
Confidence 345666777888999998755 3 3333566665555544431 1 12444 5999999999999999
Q ss_pred HHcCCeEEEEec---CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCC
Q 043646 199 RQSLAEVVEIGL---DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 199 ~~~G~~vv~v~~---~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g 275 (625)
+..|++++.|+. +.++.+|+++|+++|+++...+++.+|+++++++++|.+.|+++|+++||+||+|+|+|+|++.+
T Consensus 174 ~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~ 253 (434)
T d2z67a1 174 SFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 253 (434)
T ss_dssp HHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred HHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhh
Confidence 999999888764 34568999999999997655567889999999999999999999999999999999999999865
Q ss_pred Ccc-----ccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 276 YVK-----INLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 276 ~~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
... ...... ++|++++|+||++++|.|.|++++++... ++...+...+.
T Consensus 254 ~~~~~~~~~~~~~~---~~D~~~~s~hK~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~---------------------- 307 (434)
T d2z67a1 254 NNYYLEKLKKAFKY---RVDAVVSSSDKNLLTPIGGGLVYSTDAEF-IKEISLSYPGR---------------------- 307 (434)
T ss_dssp CHHHHHHHHHHHTS---CCSEEEEEHHHHHCCCSSCEEEEESCHHH-HHHHHTTSCSC----------------------
T ss_pred hhhccccccccccC---CcceEEEcCccccccCCCccccccCcHHH-HHHHHhhcccc----------------------
Confidence 421 112222 89999999999999999989998877642 11111111110
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEEEeCCCCCCCcceEEEEeccCCCCCC
Q 043646 351 RENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQVLGNTSVKRQAILSFLVYSTTNSSP 427 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~v~~~~~~~~~~i~~f~~~~~~~~~~ 427 (625)
..+.+.... .+++..+ ...|.+.+.++..++++++.+.|+++ .+..++... .++..+.....
T Consensus 308 ---~~~~~~~~~-~a~l~~~--~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~----~~~~~~~~~~~----- 372 (434)
T d2z67a1 308 ---ASATPVVNT-LVSLLSM--GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISVNS----- 372 (434)
T ss_dssp ---BCSHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEECSS-----
T ss_pred ---cccchHHHH-HHHHHHH--HHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCC----CCceeeeecCC-----
Confidence 011122221 2223333 34567778888888899998888764 355555432 23333333322
Q ss_pred ccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHH
Q 043646 428 ENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNE 507 (625)
Q Consensus 428 ~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~e 507 (625)
+...+...|.+ .||....+.....+.++...+.. ...++|++++.++|++
T Consensus 373 -----------~~~~l~~~L~~-~gI~g~~v~~~l~~~g~~~~~~~------------------~~~~l~~~~s~~~T~e 422 (434)
T d2z67a1 373 -----------DPVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGTY------------------THDYIVMNAAIGVRTE 422 (434)
T ss_dssp -----------CHHHHHHHHHH-TTEESCEEECTTCHHHHTCSSCC------------------SCCEEEEECCTTCCHH
T ss_pred -----------CHHHHHHHHHH-cCCeeeehhhhccccCeeeeccc------------------CCCeEEEecCCCCCHH
Confidence 36678888855 68865544444434454433322 3588999999999999
Q ss_pred HHHHHHHHHHHH
Q 043646 508 EFEFILAALEFI 519 (625)
Q Consensus 508 did~ll~aL~~~ 519 (625)
|||+++++|+++
T Consensus 423 dID~~i~~L~kI 434 (434)
T d2z67a1 423 DIVNSVSKLEKI 434 (434)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 999999999863
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=7.6e-23 Score=213.49 Aligned_cols=337 Identities=10% Similarity=0.039 Sum_probs=219.9
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
.++|+.|.+++.+.+.. ... .|....+ .++.+.+.+++++.+|.+- .++|++| +|+++++..++.++
T Consensus 11 f~~p~~i~eal~~~~~~----~~~-~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it-~G~~~~l~~~~~~l----- 78 (361)
T d1d2fa_ 11 FATAPCIIEALNQRLMH----GVF-GYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYG-PSVIYMVSELIRQW----- 78 (361)
T ss_dssp SCCCHHHHHHHHHHHTT----CCC-CCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEE-SCHHHHHHHHHHHS-----
T ss_pred CCCCHHHHHHHHHHHhC----CCC-CCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEe-CCHHHHHHHHhhhc-----
Confidence 46788999999888742 111 1211112 3567777888888888753 2389998 89999999998887
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC---CCCCCHHHHHHHHHHhhhCCCCeEEEEecc
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD---NGLLDIEALRSQLELYKAAKRPMLGSFSAC 242 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~ 242 (625)
++|||+ |+++.+.|+.+...++..|.+++.++.+. ++.+|++.+++.+.+ +++++++++++
T Consensus 79 ----------~~~gd~--Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~----~~~~~i~l~~p 142 (361)
T d1d2fa_ 79 ----------SETGEG--VVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK----PECKIMLLCSP 142 (361)
T ss_dssp ----------SCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS----TTEEEEEEESS
T ss_pred ----------cccccc--cccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc----CCceeEEeccc
Confidence 588996 88889999999888888999999888753 336899999999874 58999999999
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----cccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEecc
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKA 314 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~ 314 (625)
+||||.+.+ +++|+++|+++|+++|+|++++.... +..+.... ..-.++..++.|.++.|+ ++|++++...
T Consensus 143 ~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~R~g~~~~~~~ 221 (361)
T d1d2fa_ 143 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPALTGAYGIIENS 221 (361)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred ccccccccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccccceeeecchh
Confidence 999999876 67899999999999999999764221 11111110 122356678889876553 4788887654
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGR 394 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~ 394 (625)
....... ..........+++..+... ++..........+..+....+.++.+.+.
T Consensus 222 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 276 (361)
T d1d2fa_ 222 SSRDAYL------------------------SALKGRDGLSSPSVLALTA-HIAAYQQGAPWLDALRIYLKDNLTYIADK 276 (361)
T ss_dssp HHHHHHH------------------------HHHHTTSCCCSCCHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh------------------------hhcccccccccchhhhHHH-HHHHhhccchhhhcccccchhhHHHHHHH
Confidence 3110000 0001111123344444322 22111111111233344444444444444
Q ss_pred hCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 395 ILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 395 L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
+.+ .+++.+..+ .++.+.|.-... .+++..++++.|++++||.+.+|..|+.+
T Consensus 277 ~~~~~~~~~~~~p----~gg~~~~~~l~~-------------~~~~~~~~~~~Ll~~~gv~v~pG~~F~~~--------- 330 (361)
T d1d2fa_ 277 MNAAFPELNWQIP----QSTYLAWLDLRP-------------LNIDDNALQKALIEQEKVAIMPGYTYGEE--------- 330 (361)
T ss_dssp HHHHCSSCCCCCC----SBCSEEEEECGG-------------GCCCHHHHHHHHHHTTCEECEEGGGGCGG---------
T ss_pred hhhhccccccccc----CceeEEEEEccC-------------CCCCHHHHHHHHHHhCCEEEEeccccCCC---------
Confidence 432 345555544 345555554322 23567889998888899999999877521
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
..+++|||++ .+++++++.++.|+++++..
T Consensus 331 ------------------~~~~vRis~~--~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 331 ------------------GRGFVRLNAG--CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp ------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence 2489999986 57899999999999887653
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.91 E-value=1.9e-22 Score=214.35 Aligned_cols=352 Identities=12% Similarity=0.001 Sum_probs=228.8
Q ss_pred CceEeccCCC-----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhC--------CCCCCcE
Q 043646 76 RRLTYADHTA-----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLG--------GGQADAI 142 (625)
Q Consensus 76 ~~~~Yld~~~-----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g--------~~~~~~v 142 (625)
++++-|..+. ..+.++.+++++.+.+... ....|....+..++.+.+.+++.+.++ .+++ +|
T Consensus 30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~-~I 104 (412)
T d1bw0a_ 30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQ----ECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD-NV 104 (412)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTT----CSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG-GE
T ss_pred CCcEECcCCCCCCCCCccccHHHHHHHHHHhhCC----CCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCC-eE
Confidence 3456665442 2334567888887665321 111122223345667777777777653 2344 89
Q ss_pred EEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHH
Q 043646 143 IFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEA 220 (625)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~ 220 (625)
++| +|++++|..++.++ +++||+ |+++.+.|+.+...++..|++++.+++++ +...++++
T Consensus 105 ~it-~G~~~al~~~~~~l---------------~~~Gd~--Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~ 166 (412)
T d1bw0a_ 105 VLC-SGGSHGILMAITAI---------------CDAGDY--ALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDE 166 (412)
T ss_dssp EEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHH
T ss_pred EEe-cccccchhhhhhhh---------------hccccc--eeeeeccchhhhhhhhccCccccccccccccccchhhHH
Confidence 998 89999999998887 589996 88999999999888888999999999875 44689999
Q ss_pred HHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCC--CCCC--C
Q 043646 221 LRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSR--NIDG--Y 289 (625)
Q Consensus 221 L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~--~~~~--~ 289 (625)
+++++. ++++++++++++||||.+.+ +++|+++|++|++++++|++++.-. .+...... ..+. .
T Consensus 167 l~~~~~-----~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (412)
T d1bw0a_ 167 IRRLKD-----DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVP 241 (412)
T ss_dssp HHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCC
T ss_pred HHhhhh-----ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccc
Confidence 988776 57899999999999999966 5678888999999999999965211 11110000 0011 1
Q ss_pred cEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 290 DAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
-+++.|++|.++.|+ .+|++++.+... ... ... ..... ......+.....+. .+..
T Consensus 242 ~~~~~s~SK~~~~~G~RvG~~~~~~~~~--~~~--~~~----------------~~~~~-~~~~~~~~~~~~~~--~~~~ 298 (412)
T d1bw0a_ 242 RVILGGTAKNLVVPGWRLGWLLYVDPHG--NGP--SFL----------------EGLKR-VGMLVCGPCTVVQA--ALGE 298 (412)
T ss_dssp EEEEEESTTTTSCGGGCCEEEEEECTTC--SCH--HHH----------------HHHHH-HHHHHTCSCHHHHH--HHHH
T ss_pred cccccccCccCccCCCCcccccccchhh--cch--hhh----------------hhhcc-ccccccCCchhhhh--hccc
Confidence 245568999998664 489999987652 110 000 00000 01112233333222 1112
Q ss_pred HHHHh-hcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHh
Q 043646 369 FWVKE-YIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLF 447 (625)
Q Consensus 369 ~~~~~-~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 447 (625)
....+ ....+.+.++.+..++++.+.|.+.+++.+..| .++.+.|.-.+... .....+..++++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p----~gg~~l~~~~~~~~---------~~~~~~~~~~~~~l 365 (412)
T d1bw0a_ 299 ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMP----RGAMYLMSRIDLEK---------YRDIKTDVEFFEKL 365 (412)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCC----CBTTEEEEEECGGG---------BSSCCSHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHhcCceecCC----CCceEEEEeCChhh---------cCCCCCHHHHHHHH
Confidence 22111 112345667777788899999988889988766 34666655433110 00112456788888
Q ss_pred hhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 448 NDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 448 ~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
++++||.+.+|..|+ .+|++|||+. .++++++..++.|+++++.
T Consensus 366 l~~~gV~v~PG~~Fg-----------------------------~~g~iRis~~--~~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 366 LEEENVQVLPGTIFH-----------------------------APGFTRLTTT--RPVEVYREAVERIKAFCQR 409 (412)
T ss_dssp HHHHCEECEEGGGGT-----------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEeccccC-----------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 788899999998775 2489999986 5788899988888887654
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.91 E-value=1.6e-22 Score=213.75 Aligned_cols=350 Identities=13% Similarity=-0.017 Sum_probs=231.5
Q ss_pred ceEeccCCC----CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHH
Q 043646 77 RLTYADHTA----SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA-DAIIFCGAGTTA 151 (625)
Q Consensus 77 ~~~Yld~~~----~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~-~~vift~sGtta 151 (625)
+++.|..+. ..++|+.+.+++.+.+..- .+ .|....+..++.+.+.+++.+.+|.+.+ ++|++| +|+++
T Consensus 31 ~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~----~~-~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~-~G~~~ 104 (395)
T d1xi9a_ 31 KVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG----HN-YYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVT-AAVTE 104 (395)
T ss_dssp CCEECCCCCGGGTTCCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE-SHHHH
T ss_pred CeEECCCCCCCCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHhhhhcccccccccccccc-cccch
Confidence 455565433 2467889999998888431 11 1222233466777777888888777532 389988 89999
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhh
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYK 229 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~ 229 (625)
++..++.++ +.+||+ |+++.+.|+.+...++..|++++.++... +..+|++++++++.
T Consensus 105 ~~~~~~~~~---------------~~~Gd~--vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~--- 164 (395)
T d1xi9a_ 105 ALQLIFGAL---------------LDPGDE--ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT--- 164 (395)
T ss_dssp HHHHHHHHH---------------CCTTCE--EEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC---
T ss_pred hhhhhhhhh---------------cCCCCE--EEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc---
Confidence 999988887 578986 88999999998888899999999998654 45789999998886
Q ss_pred hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCccccCC---CCCCCCCcEEEEcCCCCCCCC
Q 043646 230 AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKINLR---SRNIDGYDAIFLATHKFLGGP 303 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~---~~~~~~~D~v~~S~hK~lggp 303 (625)
++++++++++|+||||.+.+ +++|+++|++||++++.|+++......-... ......--+++.|++|.|+.|
T Consensus 165 --~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~ 242 (395)
T d1xi9a_ 165 --DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFAT 242 (395)
T ss_dssp --TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCG
T ss_pred --ccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccc
Confidence 68999999999999999977 5678889999999999999975322111000 011111236677999999866
Q ss_pred C-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHH
Q 043646 304 G-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKK 382 (625)
Q Consensus 304 ~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~ 382 (625)
+ .+|++++......+..+... . ........+.+.+.+.+ +...+.......+..++
T Consensus 243 GlRvG~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~~q~a--~~~~l~~~~~~~~~~~~ 299 (395)
T d1xi9a_ 243 GWRLGYMYFVDPENKLSEVREA--------------------I-DRLARIRLCPNTPAQFA--AIAGLTGPMDYLKEYMK 299 (395)
T ss_dssp GGCCEEEEEECTTCTTHHHHHH--------------------H-HHHHHHTCCSCSHHHHH--HHHHHHSCCHHHHHHHH
T ss_pred hhhcEeeEecCHHHHHHHHHHH--------------------H-HHhhcCCCCcCHHHHHH--HHHHhcCCHHHHHHHHH
Confidence 4 37998875432100000000 0 00011112223333322 11222111122445566
Q ss_pred HHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC
Q 043646 383 QEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA 462 (625)
Q Consensus 383 ~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~ 462 (625)
+.++.++++.+.|.+++++.+..|. ++.+.|.-.+.. ...+..+++..|++++||.+.+|..|+
T Consensus 300 ~~~~~~~~l~~~L~~~~~~~~~~p~----gg~~~~~~l~~~------------~~~~~~~~~~~ll~~~gV~v~PG~~Fg 363 (395)
T d1xi9a_ 300 KLKERRDYIYKRLNEIPGISTTKPQ----GAFYIFPKIEVG------------PWKNDKEFVLDVLHNAHVLFVHGSGFG 363 (395)
T ss_dssp HHHHHHHHHHHHHHTSTTEECCCCC----BSSEECCEECSC------------SCSSHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHhCCCceecCCC----eeEEEeEECCCC------------CCCCHHHHHHHHHHhCCEEEEcChhhC
Confidence 6777788999999988777776553 455555443321 123455677777778999999998875
Q ss_pred chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 463 GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.. .++++||+++ .++++++..++.|++++++
T Consensus 364 ~~---------------------------~~~~~Ris~~--~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 364 EY---------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp GG---------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 21 2489999986 5789999999999988765
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.91 E-value=1.1e-22 Score=214.88 Aligned_cols=360 Identities=12% Similarity=0.003 Sum_probs=228.6
Q ss_pred HHHHHHHHhhcCCC-ccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCC-CCCCCCCCcchhhHHHHHHHHHHHHHH
Q 043646 53 EKLAWLRSQIIGND-VEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLP-FYGNTHTSDSYVGQRMTKMVHEASNYI 130 (625)
Q Consensus 53 ~~~~~lr~~~~~~~-~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~-~~~n~~~~~~~~~~~~~~~~~~~~~~i 130 (625)
.+|+.+.+.....+ ..++-..|.. ..++|+.|.+++.+.+.. .++ |.. ...++.+.+.+++
T Consensus 17 ~k~~~~~~~~~~~g~~vi~l~~g~p---------df~~p~~v~~al~~~~~~~~~~------Y~~--g~~~Lr~aia~~~ 79 (394)
T d1c7na_ 17 LKWDLMYSQNPEVGNEVVPLSVADM---------EFKNPPELIEGLKKYLDETVLG------YTG--PTEEYKKTVKKWM 79 (394)
T ss_dssp HHHHHHHHHCTTCCTTCCCCCSSSC---------SSCCCHHHHHHHHHHHHHCCCS------SBC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhcCCCeEEccCCCC---------CCCCCHHHHHHHHHHHhCCCcC------CCC--CCHHHHHHHHHHH
Confidence 46777777654332 1222222322 146789999999887742 111 211 2345677777777
Q ss_pred HHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEe
Q 043646 131 KRCLGGGQ-ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIG 209 (625)
Q Consensus 131 a~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~ 209 (625)
++.+|.+- .++|++| +|+++++..++.++ ++|||+ |++..+.|+.........|+..+.++
T Consensus 80 ~~~~g~~~~~~~I~vt-~G~~~al~~~~~~~---------------~~pgd~--vi~~~p~~~~~~~~~~~~g~~~v~~~ 141 (394)
T d1c7na_ 80 KDRHQWDIQTDWIINT-AGVVPAVFNAVREF---------------TKPGDG--VIIITPVYYPFFMAIKNQERKIIECE 141 (394)
T ss_dssp HHHHCCCCCGGGEEEE-SSHHHHHHHHHHHH---------------CCTTCE--EEECSSCCTHHHHHHHTTTCEEEECC
T ss_pred HHhcCCCCCCcceEee-ccchhhhhhhhccc---------------cccccc--cccccCcccchhhHHhhhhhcccccc
Confidence 77777752 2389998 89999999998887 689996 88888888888878888899888887
Q ss_pred cCC---CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc----c
Q 043646 210 LDD---NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK----I 279 (625)
Q Consensus 210 ~~~---~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~----i 279 (625)
... ...+|.+.++.++.. ++++++++++|+||||.+.+ +++|+++|+++++++|+|++++--... .
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 217 (394)
T d1c7na_ 142 LLEKDGYYTIDFQKLEKLSKD----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHT 217 (394)
T ss_dssp CEEETTEEECCHHHHHHHHTC----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCC
T ss_pred cccccccccchhhhhhhhhcc----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCcccc
Confidence 643 336888888887763 57899999999999999977 566889999999999999996532110 0
Q ss_pred cCCCC--CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCC
Q 043646 280 NLRSR--NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGT 356 (625)
Q Consensus 280 d~~~~--~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt 356 (625)
..... .....-+++.|++|.++.|+ .+|++++.+.... +.+... ........
T Consensus 218 ~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~-~~~~~~------------------------~~~~~~~~ 272 (394)
T d1c7na_ 218 VFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIR-ERFTKS------------------------RDATSGMP 272 (394)
T ss_dssp CGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHH-HHHHHH------------------------HHHTTCCC
T ss_pred chhhhhcccccceeecccccccccccccccccccccChhhh-hhhhhh------------------------hhhccccc
Confidence 00000 00123466779999987553 3788888765421 000000 00011111
Q ss_pred hhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC-CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC
Q 043646 357 PQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP-NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN 435 (625)
Q Consensus 357 ~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~-l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~ 435 (625)
....+.+ ++...........+.+.++..+..+.+.+.++. .+++++..+ .++.+.|.-.+.
T Consensus 273 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p----~g~~~~~~~~~~------------- 334 (394)
T d1c7na_ 273 FTTLGYK-ACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWIDFRA------------- 334 (394)
T ss_dssp CCHHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEECGG-------------
T ss_pred cccccch-hhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCC----CceeEEEEECCC-------------
Confidence 2222221 111111001112334444455555555555543 356655444 356666665442
Q ss_pred CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 436 KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 436 ~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
.+++..++++.|++++||.+.+|..|+.+ .++++|||++ .++++++..++.
T Consensus 335 ~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~---------------------------~~~~iRis~~--~~~e~i~eal~r 385 (394)
T d1c7na_ 335 LKMDHKAMEEFMIHKAQIFFDEGYIFGDG---------------------------GIGFERINLA--APSSVIQESLER 385 (394)
T ss_dssp GCCCHHHHHHHHHHTTCCCCEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCEEEEcchhhCCC---------------------------CCCEEEEEEe--CCHHHHHHHHHH
Confidence 23567889998888889999999887521 2589999996 478899999999
Q ss_pred HHHHHHhh
Q 043646 516 LEFIAAYG 523 (625)
Q Consensus 516 L~~~~~~~ 523 (625)
|++++++.
T Consensus 386 l~~~l~~L 393 (394)
T d1c7na_ 386 LNKALKDL 393 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99888764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.8e-22 Score=211.80 Aligned_cols=355 Identities=12% Similarity=0.018 Sum_probs=232.7
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHH
Q 043646 43 HHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTK 121 (625)
Q Consensus 43 ~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~ 121 (625)
.+.+.+.+.....+++++.. ++++-|..+.. -++|+.+.+++.+.+..- .. .|....+..+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~G-------------~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~----~~-~Y~~~~G~~~ 69 (375)
T d1o4sa_ 8 IPISKTMELDAKAKALIKKG-------------EDVINLTAGEPDFPTPEPVVEEAVRFLQKG----EV-KYTDPRGIYE 69 (375)
T ss_dssp SCCCSSHHHHHHHHHHHHTT-------------CCCEECCCSSCSSCCCHHHHHHHHHHHTTC----CC-CCCCTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHCC-------------CCeEECCCcCCCCCCCHHHHHHHHHHHhcC----Cc-CCCCCcCCHH
Confidence 34444555566666666542 12333332222 346788999998877431 01 1222233466
Q ss_pred HHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 122 MVHEASNYIKRCLGGGQA-DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
+.+.+.+++.+..|.+.+ +++++| +|++.++..++.++ +++||+ |+++.+.|+.+......
T Consensus 70 lR~aia~~~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~gd~--vlv~~P~y~~~~~~~~~ 131 (375)
T d1o4sa_ 70 LREGIAKRIGERYKKDISPDQVVVT-NGAKQALFNAFMAL---------------LDPGDE--VIVFSPVWVSYIPQIIL 131 (375)
T ss_dssp HHHHHHHHHHHHHTCCCCGGGEEEE-SHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHHHH
T ss_pred HHHHHHhhhhhcccccccccccccc-CcHHHHHHHHHHHH---------------hCCCCE--EEEccCccccchhhhhc
Confidence 777777888777776532 389998 89999999999988 578886 88888888888888888
Q ss_pred cCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCC
Q 043646 201 SLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP 275 (625)
Q Consensus 201 ~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g 275 (625)
.|..++.++.+. ++.+|.+.++.... ++++++++++|+||||.+.+ +++|+++|++|+++++.|+++...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~ 206 (375)
T d1o4sa_ 132 AGGTVNVVETFMSKNFQPSLEEVEGLLV-----GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSL 206 (375)
T ss_dssp TTCEEEEEECCGGGTTCCCHHHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred cccccccccccccccccchhHHHHHhhc-----cCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccc
Confidence 899988888765 45778888776655 57899999999999999976 567888899999999999986643
Q ss_pred CccccCCC----CCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhh
Q 043646 276 YVKINLRS----RNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEE 350 (625)
Q Consensus 276 ~~~id~~~----~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (625)
........ .+...--+++.|++|.++.|+ .+|+++.++.... .+.. ..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~--~~~~-------------------------~~ 259 (375)
T d1o4sa_ 207 VYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVAT--AVSK-------------------------IQ 259 (375)
T ss_dssp BCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHH--HHHH-------------------------HH
T ss_pred cccccccccccccCCCCCEEEEeechhhccCCccccccccccccchh--hhhh-------------------------hh
Confidence 22111100 011133577889999998554 4899998887622 1100 00
Q ss_pred hhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccc
Q 043646 351 RENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENM 430 (625)
Q Consensus 351 ~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~ 430 (625)
............ ..+.... ........+.....++.+.+.|.+. ++++..| .++.+.+.-.+.
T Consensus 260 ~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p----~gg~f~~~~~~~-------- 322 (375)
T d1o4sa_ 260 SHTTSCINTVAQ-YAALKAL---EVDNSYMVQTFKERKNFVVERLKKM-GVKFVEP----EGAFYLFFKVRG-------- 322 (375)
T ss_dssp HHHTCSCCHHHH-HHHHHHT---TCCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCC----SBSSEEEEECSS--------
T ss_pred ccccccccccch-hhhhhhc---ccchhhhHHHHHHHHHHHHHHHHhc-CceEecC----CccEEEEEECCC--------
Confidence 001111111111 1111111 2223345556666677788888765 7776655 346665554443
Q ss_pred cccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHH
Q 043646 431 KIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFE 510 (625)
Q Consensus 431 ~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid 510 (625)
+..+++..|++++||.+++|..|+ .+||+||+++ .++++++
T Consensus 323 --------~~~~~~~~ll~~~gV~v~pG~~F~-----------------------------~~g~iRis~~--~~~e~l~ 363 (375)
T d1o4sa_ 323 --------DDVKFCERLLEEKKVALVPGSAFL-----------------------------KPGFVRLSFA--TSIERLT 363 (375)
T ss_dssp --------CHHHHHHHHHHHHCEECEEGGGGT-----------------------------CTTEEEEECC--SCHHHHH
T ss_pred --------CHHHHHHHHHHhCCEEEEEccccC-----------------------------CCCeEEEEEc--CCHHHHH
Confidence 245666676677899999998764 2589999996 5889999
Q ss_pred HHHHHHHHHHH
Q 043646 511 FILAALEFIAA 521 (625)
Q Consensus 511 ~ll~aL~~~~~ 521 (625)
..++.|+++++
T Consensus 364 ~al~rl~~~l~ 374 (375)
T d1o4sa_ 364 EALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.90 E-value=1.6e-22 Score=210.58 Aligned_cols=313 Identities=14% Similarity=0.027 Sum_probs=199.4
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
++|+.+.+++.+.+......|... ..++|+++++++|.+++ +|+++ +|++.++..+...+
T Consensus 35 ~~p~~~~~a~~~~~~~~~~Yp~~~-----------~~~Lr~aia~~~~v~~~-~I~~~-~g~~~~~~~~~~~~------- 94 (355)
T d1lc5a_ 35 GMPVSVKRALIDNLDCIERYPDAD-----------YFHLHQALARHHQVPAS-WILAG-NGETESIFTVASGL------- 94 (355)
T ss_dssp CCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCC-----------hHHHHHHHHHHhCCCHH-HEEec-ccHHHHHHHHHhhh-------
Confidence 457788999888664321122211 13589999999999876 78887 78888888776654
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-C-CCCCHHHHHHHHHHhhhCCCCeEEEEecccCc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-N-GLLDIEALRSQLELYKAAKRPMLGSFSACSNV 245 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~-~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~ 245 (625)
. ++. +++..+.++.+.......+++++.++++. + +.++ +.+.+++. +++++|++++|+||
T Consensus 95 ---------~-~~~--~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~-----~~~~~v~l~nP~NP 156 (355)
T d1lc5a_ 95 ---------K-PRR--AMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALT-----PDLDCLFLCTPNNP 156 (355)
T ss_dssp ---------C-CSE--EEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCC-----TTCCEEEEESSCTT
T ss_pred ---------c-ccc--ccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccc-----cccceeeeecccCc
Confidence 2 333 33333455555556667799999999875 3 3444 44555554 68999999999999
Q ss_pred cccccC---HHHHHHHHHHcCCEEEEeccCcCCC-ccccCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccC
Q 043646 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VKINLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLG 319 (625)
Q Consensus 246 TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~-~~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~ 319 (625)
||.+.+ +++|+++|++|++++++|++++... ........ ....-.+++.|++|++|.|+ .+|+++++++... .
T Consensus 157 tG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~-~ 235 (355)
T d1lc5a_ 157 TGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAM-A 235 (355)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHH-H
T ss_pred ccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhh-H
Confidence 999987 5678888899999999999965211 11111110 11133477889999998554 4899998876521 0
Q ss_pred CCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCC
Q 043646 320 SSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQ 399 (625)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~ 399 (625)
.+. ......+.+..+. .+...++.........+++.++..+++.+.|.+++
T Consensus 236 ~~~---------------------------~~~~~~~~~~~~~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (355)
T d1lc5a_ 236 RMR---------------------------RQQMPWSVNALAA--LAGEVALQDSAWQQATWHWLREEGARFYQALCQLP 286 (355)
T ss_dssp HHH---------------------------HHSCTTCSCHHHH--HHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHH---------------------------hhcCCcccccccc--ccccccccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 000 0000111222221 11111111222234455566667788899999998
Q ss_pred cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHH
Q 043646 400 NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLE 479 (625)
Q Consensus 400 gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~ 479 (625)
++++... .+.+.|.-.+. +..++++.|.+ +||.+++|..+.
T Consensus 287 ~~~~~p~-----~~~f~~~~~~~----------------~~~~~~~~L~~-~gv~vr~~~~f~----------------- 327 (355)
T d1lc5a_ 287 LLTVYPG-----RANYLLLRCER----------------EDIDLQRRLLT-QRILIRSCANYP----------------- 327 (355)
T ss_dssp TEEECCC-----SSSEEEEEESC----------------TTCCHHHHHHT-TTEECEECTTST-----------------
T ss_pred CcEECCC-----CCEEEEEECCC----------------CHHHHHHHHHH-CCcEEEeCccCC-----------------
Confidence 9887533 23444433332 13468888865 699999886553
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 480 IRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 480 ~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
+..++|+|||++ +++|+++++++|++++
T Consensus 328 ----------~~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 328 ----------GLDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp ----------TCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred ----------CCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 113589999997 8999999999999873
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.90 E-value=3.1e-22 Score=213.17 Aligned_cols=350 Identities=11% Similarity=0.023 Sum_probs=233.9
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
++|+.+.+++.+.+... .+....|....+..++.+.+.+++++.+|.+ +.++|++| +|++++|..++.++
T Consensus 39 ~~p~~i~eal~~a~~~~--~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it-~G~~~al~~~~~~l----- 110 (418)
T d2r5ea1 39 HAPKYALNALAAAANSP--DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT-VGAYEALYATIQGH----- 110 (418)
T ss_dssp CCCHHHHHHHHHHHTCS--CGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhCC--CccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEc-CCCchhhhhhhhhc-----
Confidence 45788999998887532 1111123333345677788888888888875 33489998 89999999999988
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC----------CCCHHHHHHHHHHhhhCCCCe
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG----------LLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~----------~ld~~~L~~~l~~~~~~~~~~ 235 (625)
+++||. |+++.+.|+.+...++..|++++.|+++.++ .++.+.+.+... .+++
T Consensus 111 ----------~~~gd~--vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 173 (418)
T d2r5ea1 111 ----------VDEGDE--VIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN-----EKTK 173 (418)
T ss_dssp ----------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC-----TTEE
T ss_pred ----------cccccc--eeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh-----cccc
Confidence 588986 9999999999988899999999999886532 467777776655 5889
Q ss_pred EEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcc----ccCCCCC-CCCCcEEEEcCCCCCCCCC-Cc
Q 043646 236 LGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVK----INLRSRN-IDGYDAIFLATHKFLGGPG-TP 306 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~----id~~~~~-~~~~D~v~~S~hK~lggp~-g~ 306 (625)
++++++++||||.+.+ +++|+++|++||++++.|+++...+.. ..+.... ....-+++.|++|.++.|+ .+
T Consensus 174 ~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRi 253 (418)
T d2r5ea1 174 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI 253 (418)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC
T ss_pred ceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccc
Confidence 9999999999999977 456888999999999999997643221 1111110 0123366779999998664 49
Q ss_pred eEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHh-------hcCHHH
Q 043646 307 GILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKE-------YIGYEV 379 (625)
Q Consensus 307 G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~-------~~g~~~ 379 (625)
|+++.++++.. .+... ......+++...+.+. +.++... ..-.+.
T Consensus 254 G~~~~~~~~i~--~~~~~------------------------~~~~~~~~~~~~q~a~--~~~l~~~~~~~~~~~~~~~~ 305 (418)
T d2r5ea1 254 GWAYGPEALLK--NLQMV------------------------HQNCVYTCATPIQEAI--AVGFETELKRLKSPECYFNS 305 (418)
T ss_dssp EEEESCHHHHH--HHHHH------------------------HTTTTCSCCHHHHHHH--HHHHHHHHTTTTSTTSHHHH
T ss_pred ccccccchhhh--hhhhc------------------------ccccccccccchhhhc--cccccccccccccchhhHHH
Confidence 99998887621 11000 0111223344443221 1111111 112456
Q ss_pred HHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCC
Q 043646 380 IKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGC 459 (625)
Q Consensus 380 i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~ 459 (625)
++++.+..++++.+.|.++ |+++..| .++.+.|.-++...... .........+..++++.|++++||.+.+|.
T Consensus 306 ~~~~~~~~r~~l~~~L~~~-g~~~~~P----~gg~f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~ 378 (418)
T d2r5ea1 306 ISGELMAKRDYMASFLAEV-GMNPTVP----QGGYFMVADWSSLDSKV--DLTQETDARKDYRFTKWMTKSVGLQGIPPS 378 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCEEEEC----SBSSEEEEECGGGSTTC--CGGGCCCSSHHHHHHHHHHHHHSEECBCGG
T ss_pred HHHHHHHhhhhHHhhHhhc-CCcccCC----CceeEEEEEcccccccc--cchhcccccCHHHHHHHHHHHCCEEEeCch
Confidence 6777777888999999887 7887766 45777776554321000 000011123456788888888999999998
Q ss_pred CCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 460 ACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
.|........ .++++|||+. .++++++..++.|++++.
T Consensus 379 ~F~~~~~~~~----------------------g~~~iRis~~--~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 379 AFYSEPNKHL----------------------GEDFVRYCFF--KKDENLQKAAEILRKWKG 416 (418)
T ss_dssp GGSCGGGHHH----------------------HTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred hhCCCCCccC----------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHc
Confidence 8764322110 1489999995 488999999999998753
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=1.2e-22 Score=212.98 Aligned_cols=338 Identities=13% Similarity=0.041 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
.++++++.+++++|.+ .+++|+|| |+|+..++.+++ +++||+ |++++.+|+++..++...
T Consensus 32 ~v~~~E~~la~~~g~~---~ai~~~sg-t~Al~~al~al~--------------~~~gde--Vi~~~~~~~~~~~ai~~~ 91 (376)
T d1mdoa_ 32 KNQELEAAFCRLTGNQ---YAVAVSSA-TAGMHIALMALG--------------IGEGDE--VITPSMTWVSTLNMIVLL 91 (376)
T ss_dssp HHHHHHHHHHHHHCCS---EEEEESCH-HHHHHHHHHHTT--------------CCTTCE--EEEESSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEeCCH-HHHHHHHHHHhC--------------CCCCCE--EEEecccccccccchhcc
Confidence 4577899999999985 45777566 555777777774 678996 999999999999999999
Q ss_pred CCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 202 LAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 202 G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
|++++.++++. ++.+|+++|+++++ ++|++|+++| ..|...|+++|.++|+++|++++.|+||+.|...-+
T Consensus 92 g~~pv~~d~~~~~~~~d~~~l~~~i~-----~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~ 163 (376)
T d1mdoa_ 92 GANPVMVDVDRDTLMVTPEHIEAAIT-----PQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKG 163 (376)
T ss_dssp TCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT
T ss_pred ccceeeecccccccCCCHHHHHHhcC-----CCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCC
Confidence 99999999987 57899999999998 6899988765 579999999999999999999999999999865433
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
..... .+..+++++++|.++++.| |+++.++.... ..++.....|................+......+......+
T Consensus 164 ~~~g~-~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~- 239 (376)
T d1mdoa_ 164 RHIGA-RGTAIFSFHAIKNITCAEG-GIVVTDNPQFA-DKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDL- 239 (376)
T ss_dssp EETTS-SSEEEEECCTTSSSCSSSC-EEEEESCHHHH-HHHHHHTBTTEECC-----------CCEESSCCCBCCCCHH-
T ss_pred eeccc-ccCccccCCCcCCCCCCCC-CEEEEechhHH-HHHHhhcccCCcccccccccccccccccchhcccccccchh-
Confidence 32221 1445555667899986665 88888766421 11111111111100000000000000000001111111222
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCC--CcceEEEEeccCCCCCCccccccCCCCC
Q 043646 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVK--RQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~--~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
.+++... +....+.+.++.+.+++++.+.|.+++.+.+....... ....+...+... ....
T Consensus 240 ---~Aai~~~--qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 302 (376)
T d1mdoa_ 240 ---NAAIALA--QLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEA------------RCGI 302 (376)
T ss_dssp ---HHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHH------------HHSS
T ss_pred ---hhhhhhh--hhhhhhHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccccc------------cchh
Confidence 2222222 22346677788888999999999998777655443211 112222222211 1123
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCc--hhhHhhhc-CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAG--PYGHTLLA-FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAA 515 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l~-~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~a 515 (625)
+.+++.+.|.+ .||.++....+.. ++...... .+-+.+..+ ....+.|.+++.+|++|+++++++
T Consensus 303 ~Rd~l~~~L~~-~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~-----------~~~~i~LP~~~~lt~~ei~~I~~~ 370 (376)
T d1mdoa_ 303 TRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWN-----------SERICSLPLFPDMTESDFDRVITA 370 (376)
T ss_dssp CHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHH-----------HTTEEEECCCTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHH-CCCCeeeECcchhcCHHHHhhCCCCCCHHHHHH-----------HhCEEEccCCCCCCHHHHHHHHHH
Confidence 45679999955 7999886543211 11111111 111222222 257799999999999999999999
Q ss_pred HHHHH
Q 043646 516 LEFIA 520 (625)
Q Consensus 516 L~~~~ 520 (625)
|++++
T Consensus 371 i~~i~ 375 (376)
T d1mdoa_ 371 LHQIA 375 (376)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.5e-22 Score=205.91 Aligned_cols=289 Identities=15% Similarity=0.054 Sum_probs=194.6
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC
Q 043646 124 HEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA 203 (625)
Q Consensus 124 ~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (625)
.+++++|++++|.+++ +|++| +|++++|..+++++ .+|||. +|+++.+.|..+...++..|+
T Consensus 59 ~~Lr~~ia~~~gv~pe-~I~it-~Gs~eai~~~~~~~---------------~~pgd~-~Vl~~~P~y~~~~~~~~~~g~ 120 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPE-QVLVS-RGADEGIELLIRAF---------------CEPGKD-AILYCPPTYGMYSVSAETIGV 120 (354)
T ss_dssp HHHHHHHHHHHTSCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTTC-EEEECSSSCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCChH-Heeec-cCchHHHHHHHHHh---------------hccccc-cccccccccccchhhhhccCc
Confidence 3689999999999987 89998 89999999999988 578875 588888999999888888999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHH--HcCCEEEEeccCcCCCccccC
Q 043646 204 EVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLH--QYGGFACFDFAASGPYVKINL 281 (625)
Q Consensus 204 ~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~--~~g~~vivD~A~~~g~~~id~ 281 (625)
+++.++.++++.+|+++++.++. ++++|++++++||||.+.+-+++..++. +++.++++|++.+-.......
T Consensus 121 ~v~~~~~~~~~~~d~~~l~~~~~------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~ 194 (354)
T d1fg7a_ 121 ECRTVPTLDNWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASL 194 (354)
T ss_dssp EEEECCCCTTSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCS
T ss_pred eeeccccccccccchhhhhhccc------ccceeeccCCCccceeEeeecccccccccccccccccccccchhhcccccc
Confidence 99999998888999999887653 6899999999999999988655444333 367888888875421111111
Q ss_pred CCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 282 RSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 282 ~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
... ....-.+++.|++|+||.|+ .+|+++.++++.. .+.. .......+.
T Consensus 195 ~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i~--~l~~---------------------------~~~~~~~~~ 245 (354)
T d1fg7a_ 195 AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVIN--LLMK---------------------------VIAPYPLST 245 (354)
T ss_dssp GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHH--HHHH---------------------------HSCSSCSCH
T ss_pred chhhcccccceEEeCCccccCCCccccccccccchhhh--hhhh---------------------------hcCccchhh
Confidence 111 11133466779999998564 4899999888732 1100 000111111
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
.....++..+............++....++++.+.|.+++++....+. .+++.|.-.+ +
T Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~----~~~f~~~~~~-----------------~ 304 (354)
T d1fg7a_ 246 PVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS----ETNYILARFK-----------------A 304 (354)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC----SSSEEEEEET-----------------T
T ss_pred HHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCC----CceEEEEeCC-----------------C
Confidence 111111111111111112233344556677888888888887655553 2444444433 2
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
..++.+.|.+ +||.++++..+. + .++|+|||++ +++|+++++++|+.
T Consensus 305 ~~~~~~~L~~-~gIlvr~~~~~~--------~--------------------~~~~lRisig---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 305 SSAVFKSLWD-QGIILRDQNKQP--------S--------------------LSGCLRITVG---TREESQRVIDALRA 351 (354)
T ss_dssp HHHHHHHHHH-TTEECEECTTST--------T--------------------CTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-CCcEEecCCCCC--------C--------------------CCCEEEEEeC---CHHHHHHHHHHHhh
Confidence 5678888865 799999765432 1 2589999998 89999999999973
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.89 E-value=7.8e-22 Score=212.81 Aligned_cols=241 Identities=12% Similarity=0.026 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
..+.++++.+|+++|++ +.+|+.+||+++...++.++ ++|||+ |+++..+|.|+..+++.
T Consensus 66 ~~i~eae~~~A~~~ga~---~a~f~~~Gtt~~n~a~i~a~---------------~~~gd~--Vi~~~~~H~Sv~~~~~~ 125 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNAD---KTYFVLGGSSNANNTVTSAL---------------VSNGDL--VLFDRNNHKSVYNSALA 125 (462)
T ss_dssp THHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHH---------------CCTTCE--EEEETTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCchHHHHHHHHHHh---------------cCCCCe--EEecccchHHHHHHHHH
Confidence 45788999999999985 45776689998777766665 589996 99999999999887765
Q ss_pred c-CCeEEE--EecCCCC--------CCCHHHHHHHHHH----hhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCE
Q 043646 201 S-LAEVVE--IGLDDNG--------LLDIEALRSQLEL----YKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (625)
Q Consensus 201 ~-G~~vv~--v~~~~~~--------~ld~~~L~~~l~~----~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~ 265 (625)
. +..+++ ++.++.+ .++.+.+++.+.. .....+++++++.+.+|..|.+.|+++|+++||++|++
T Consensus 126 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~ 205 (462)
T d1c4ka2 126 MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDY 205 (462)
T ss_dssp TTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSE
T ss_pred HhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCE
Confidence 4 444444 3444433 3344444433221 01124677888888999999999999999999999999
Q ss_pred EEEeccCcCCCccccCCCC----------CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeec
Q 043646 266 ACFDFAASGPYVKINLRSR----------NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVN 335 (625)
Q Consensus 266 vivD~A~~~g~~~id~~~~----------~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~ 335 (625)
+++|+||+.+....+.... ...++|++++|+||++|++.+.+++.+++... ... ...+.
T Consensus 206 l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~--~~~---~~~~~------ 274 (462)
T d1c4ka2 206 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI--KGQ---LRYCD------ 274 (462)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG--TTS---TTCCC------
T ss_pred EEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccc--ccc---chhhh------
Confidence 9999999987665443211 01256999999999999888766666666652 111 11110
Q ss_pred cccccccccccchhhhhcCCChhHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCc
Q 043646 336 AFDEKDTLYLEDIEERENGGTPQIVQMI--RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQN 400 (625)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~g 400 (625)
..........+..++|+...+. .++..++ ...+.+++.++..++++++++++.++++
T Consensus 275 ------~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~--~~~~g~~l~~~~~~~a~~~r~~l~~~~~ 333 (462)
T d1c4ka2 275 ------HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGS 333 (462)
T ss_dssp ------HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHhhhhcccCCchHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111233455666655443 3444443 3333445666777788888888876644
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.89 E-value=3.5e-21 Score=205.71 Aligned_cols=359 Identities=13% Similarity=0.080 Sum_probs=227.5
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCC--CCCC-----CCcchhhHHHHHHHHHHHHHHHHHhCC----CCCCcEEEe
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFY--GNTH-----TSDSYVGQRMTKMVHEASNYIKRCLGG----GQADAIIFC 145 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~--~n~~-----~~~~~~~~~~~~~~~~~~~~ia~~~g~----~~~~~vift 145 (625)
+++-|..+....+.+.+.+.+.+...... .... ...|....+..++.+++.+++.+.+|. +++ +|++|
T Consensus 37 G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe-~I~it 115 (431)
T d1m7ya_ 37 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVLT 115 (431)
T ss_dssp SBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEEE
T ss_pred cEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc-eEEEC
Confidence 46777777777777777777655321100 0000 000111112345566666666666653 344 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-cCCeEEEEecCC--CCCCCHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-SLAEVVEIGLDD--NGLLDIEALR 222 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G~~vv~v~~~~--~~~ld~~~L~ 222 (625)
+|++++|..++.++ ++|||+ |+++.+.|+.+...++. .|++++.++++. +..+|++.++
T Consensus 116 -~G~~~al~~~~~~l---------------~~pGd~--Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~ 177 (431)
T d1m7ya_ 116 -AGATSANETFIFCL---------------ADPGEA--VLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE 177 (431)
T ss_dssp -EHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred -CCHHHHHHHHHHHh---------------cCCCCE--EEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhh
Confidence 89999999999988 578986 89998999888777764 488999999876 3478999999
Q ss_pred HHHHHhh-hCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCC--------C
Q 043646 223 SQLELYK-AAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRN--------I 286 (625)
Q Consensus 223 ~~l~~~~-~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~--------~ 286 (625)
+++.+.. ...+++++++++|+||||.+.+ +++|+++|++||+++|+|++++.-. ...++..+. .
T Consensus 178 ~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~ 257 (431)
T d1m7ya_ 178 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENS 257 (431)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSS
T ss_pred hhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhccccccc
Confidence 9887532 2347899999999999999977 6788999999999999999975311 011110000 0
Q ss_pred C--CCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH-H
Q 043646 287 D--GYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ-M 362 (625)
Q Consensus 287 ~--~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~-~ 362 (625)
. .--+++.|++|.+|.|+ .+|+++.+++... .... ......++++..+ .
T Consensus 258 ~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~--~~~~-------------------------~~~~~~~~~~~~~~~ 310 (431)
T d1m7ya_ 258 EVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV--AAAT-------------------------KMSSFGLVSSQTQHL 310 (431)
T ss_dssp SGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH--HHHH-------------------------HHGGGSCCCHHHHHH
T ss_pred ccCceEEEEecCcccccCCCCccceeccchhhhH--HHHH-------------------------HHhccccccccccch
Confidence 0 11266779999998664 4899998877621 1000 0011122222222 2
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 363 IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
+.+.+........-.+..+.+.++..+.+.+.|++ +|+.+..+ .++.+.|.-.+... ......+..+
T Consensus 311 ~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~~~p----~gg~f~w~~l~~~~--------~~~~~~~~~~ 377 (431)
T d1m7ya_ 311 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNG----NAGLFCWVDMRHLL--------RSNTFEAEME 377 (431)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCC----CSSSEEEEECGGGS--------SSSSHHHHHH
T ss_pred hhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEEecC----CceeEEEEECcccc--------ccCcccCHHH
Confidence 22211111000112344556666667788888877 48888765 34666665544210 0111122346
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.|.+++||.+.+|..|+.. .++|+||+++ ..++++++..++.|++++.+
T Consensus 378 l~~~ll~~~gV~v~PG~~F~~~---------------------------~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 378 LWKKIVYEVHLNISPGSSCHCT---------------------------EPGWFRVCFA-NLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp HHHHHHHTSCEECEEGGGGTCS---------------------------STTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEeccccCCC---------------------------CCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence 7778878899999999877521 3589999996 34678899999999988765
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.88 E-value=3.6e-21 Score=205.43 Aligned_cols=358 Identities=13% Similarity=0.091 Sum_probs=223.8
Q ss_pred CceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCC------CcchhhHHHHHHHHHHHHHHHHHhCC----CCCCcEEEe
Q 043646 76 RRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHT------SDSYVGQRMTKMVHEASNYIKRCLGG----GQADAIIFC 145 (625)
Q Consensus 76 ~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~------~~~~~~~~~~~~~~~~~~~ia~~~g~----~~~~~vift 145 (625)
++++-|..+....+.+.+.+.+.+.........+. ..|....+..++.+++.+++.+.+|. +++ +|++|
T Consensus 36 ~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e-~Ivit 114 (428)
T d1iaya_ 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SCEEE
T ss_pred CceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh-hEEEc
Confidence 45788887777788888888876643221111000 01111112345556666666666653 344 89998
Q ss_pred CChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH-cCCeEEEEecCC--CCCCCHHHHH
Q 043646 146 GAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ-SLAEVVEIGLDD--NGLLDIEALR 222 (625)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G~~vv~v~~~~--~~~ld~~~L~ 222 (625)
+|+++++..++.++ +++||+ |+++.+.|+++...+.. .|++++.++++. +..+|+++++
T Consensus 115 -~G~~~al~~~~~~l---------------~~~Gd~--Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 176 (428)
T d1iaya_ 115 -GGATGANETIIFCL---------------ADPGDA--FLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVK 176 (428)
T ss_dssp -EHHHHHHHHHHHHH---------------CCTTCE--EEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHH
T ss_pred -CCHHHHHHHHHHHh---------------CCCCCE--EEEccCCchHHHHHHHHhcCCeEEEeeccccccccccccccc
Confidence 89999999999887 588996 89999999988766664 489999999875 4579999988
Q ss_pred HHHHHh-hhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc----ccc------CCCCC--C
Q 043646 223 SQLELY-KAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----KIN------LRSRN--I 286 (625)
Q Consensus 223 ~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~----~id------~~~~~--~ 286 (625)
.++... ...++++++++++|+||||.+.+ +++|+++|++||+++|+|++++.... ... ..... .
T Consensus 177 ~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~ 256 (428)
T d1iaya_ 177 EAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred chhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccc
Confidence 776532 23457899999999999999977 67899999999999999999763111 010 00000 0
Q ss_pred CCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcC-CChhHHHH-H
Q 043646 287 DGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENG-GTPQIVQM-I 363 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~-gt~~~~~~-~ 363 (625)
....+++.|++|.|+.|+ .+|+++..++... +.+ ...... ..+...+. +
T Consensus 257 ~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~-~~~---------------------------~~~~~~~~~~~~~~~~~ 308 (428)
T d1iaya_ 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVV-NCA---------------------------RKMSSFGLVSTQTQYFL 308 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCHHHH-HHH---------------------------HHHHTTSCCCHHHHHHH
T ss_pred cceEEEEecCCCcccCCCcccccccccccchh-hhh---------------------------hhhhcccccccccccch
Confidence 122367789999987654 4899988655411 100 000111 11122221 1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC-ChHH
Q 043646 364 RAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL-HGPF 442 (625)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l-~~~~ 442 (625)
.+.+.....-....+..+++.+..++.+.+.|+. +|+++..+ .++.+.|.-.+... ....+ +..+
T Consensus 309 ~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~-~gi~~~~p----~gg~f~w~~l~~~~---------~~~~~~~~~~ 374 (428)
T d1iaya_ 309 AAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-VGIKCLKN----NAGLFCWMDLRPLL---------RESTFDSEMS 374 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCBCCC----SSSSEEEEECGGGC---------SSSSHHHHHH
T ss_pred hhhhhhhccccccccccccccchhHHHHHHHHHh-CCCEEecC----CcceEEEEECcccc---------ccCCCCCHHH
Confidence 1111000000011234445555566777787865 47877655 34666665543210 00111 1345
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.|++++||.+.+|..|+.. .++|+||+++ ..++++++..++.|++++..
T Consensus 375 l~~~Ll~~~gV~v~PG~~F~~~---------------------------~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 375 LWRVIINDVKLNVSPGSSFECQ---------------------------EPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHTSCEECEEGGGGTCS---------------------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEcchhcCCC---------------------------CCCEEEEEeC-CCCHHHHHHHHHHHHHHHhh
Confidence 7788878899999999877511 3699999996 34677899999999987754
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=4.7e-21 Score=204.01 Aligned_cols=317 Identities=15% Similarity=0.173 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhH
Q 043646 118 RMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL 195 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (625)
+..++.+.+.+++++..|.+ +.++|++| +|+++++..++.++ +++||+ |+++.+.|+.+.
T Consensus 81 G~~~LR~aia~~~~~~~g~~~~~~~~I~it-~G~~~al~~~~~~~---------------~~~Gd~--Vlv~~P~y~~~~ 142 (420)
T d1vp4a_ 81 GDPVLKQQILKLLERMYGITGLDEDNLIFT-VGSQQALDLIGKLF---------------LDDESY--CVLDDPAYLGAI 142 (420)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEE-EHHHHHHHHHHHHH---------------CCTTCE--EEEEESCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCHHHeEec-cchhhhHHHHHHhh---------------hccccc--cccccccccchh
Confidence 34667777888888887764 33489998 89999999999887 578986 999999999998
Q ss_pred HHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhC----CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEE
Q 043646 196 LSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAA----KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACF 268 (625)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~----~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~viv 268 (625)
..++..|++++.++.++.+ +|++.++..+.+.... +.+.++++++++||||.+.+ +++|+++|++|++++|+
T Consensus 143 ~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~ 221 (420)
T d1vp4a_ 143 NAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 221 (420)
T ss_dssp HHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhhhcccccccccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccc
Confidence 8889999999999987654 6888887766532111 23457788999999999976 57899999999999999
Q ss_pred eccCcCCCc-cccCC---CCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccc
Q 043646 269 DFAASGPYV-KINLR---SRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTL 343 (625)
Q Consensus 269 D~A~~~g~~-~id~~---~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (625)
|++++.-.. ..... .....+.-+++.++.|+++ |+ .+|+++.++++.+ .+.
T Consensus 222 De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~--~l~--------------------- 277 (420)
T d1vp4a_ 222 DDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIR--KIV--------------------- 277 (420)
T ss_dssp ECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHH--HHH---------------------
T ss_pred cchhhhccccCcccccccccccccceeEEeccccccc-cccccccccccchhhh--hhh---------------------
Confidence 999653211 00000 0011134466678889875 53 5899998887722 110
Q ss_pred cccchhhhhcCCChhHHHHHHHH-HHHH-HHhh--cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEe
Q 043646 344 YLEDIEERENGGTPQIVQMIRAA-LAFW-VKEY--IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLV 419 (625)
Q Consensus 344 ~~~~~~~~~~~gt~~~~~~~~aa-l~~~-~~~~--~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~ 419 (625)
........+++.+.+.+.+. +.-. ..+. .-.+.+.++...+.+.+.+.+.+++++++..|. ++.+.|..
T Consensus 278 ---~~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~----gg~f~~~~ 350 (420)
T d1vp4a_ 278 ---QAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSE----GGLFIWLT 350 (420)
T ss_dssp ---HHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCS----BSSEEEEE
T ss_pred ---hhhhhccccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCC----ceEEEEEE
Confidence 00122233444444432211 1100 0000 002233444444566666677778899988763 56777766
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
.++ +++..++.+.|. ++||.+.+|+.|+.. + ..++++|||
T Consensus 351 ~~~--------------~~d~~~~~~~l~-~~gV~v~PG~~F~~~-~------------------------~~~~~iRls 390 (420)
T d1vp4a_ 351 LPE--------------GFDTWEMFEYAK-RKKVFYVPGRVFKVY-D------------------------EPSPSMRLS 390 (420)
T ss_dssp CCT--------------TCCTTTTHHHHH-HHTEECEEGGGGCTT-C------------------------CCCSEEEEE
T ss_pred CCC--------------CCCHHHHHHHHH-HCCeEEEechhhCCC-C------------------------CCCCEEEEE
Confidence 543 234556777774 579999999877521 1 135899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
++. .++++++..++.|++++++..+
T Consensus 391 ~~~-~~~e~l~~a~~rL~~~l~~~~~ 415 (420)
T d1vp4a_ 391 FCL-PPDEKIVEGIKRLREVVLEYGK 415 (420)
T ss_dssp CSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCc-CCHHHHHHHHHHHHHHHHHhhH
Confidence 963 5789999999999999877654
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=9.2e-21 Score=201.63 Aligned_cols=352 Identities=10% Similarity=-0.023 Sum_probs=228.0
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHHHHHHHHHhcccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA--DAIIFCGAGTTAAIKRLQEVMGITV 164 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~--~~vift~sGttaal~~l~~~l~~~~ 164 (625)
.++|+.+.+++.+.+.. .+....|....+..++.+.+.+++.+.+|.+-+ ++|++| +|++++|..++.++
T Consensus 37 ~~~p~~v~~a~~~al~~---~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it-~G~~~al~~~~~~l---- 108 (418)
T d1w7la_ 37 FPPPDFAVEAFQHAVSG---DFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVT-VGGYGALFTAFQAL---- 108 (418)
T ss_dssp SCCCHHHHHHHHHHTSS---CGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEE-SHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHhC---CCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeec-cCcHHHHHHHHHhh----
Confidence 45688999999887752 111111333334566777788888887887633 379998 89999999999888
Q ss_pred cchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC------------CCCCCHHHHHHHHHHhhhCC
Q 043646 165 PSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD------------NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~------------~~~ld~~~L~~~l~~~~~~~ 232 (625)
+++|+. |+++.+.++.+...+...|++++.++.++ +..+|.+++..... +
T Consensus 109 -----------~~~g~~--vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~ 170 (418)
T d1w7la_ 109 -----------VDEGDE--VIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT-----S 170 (418)
T ss_dssp -----------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC-----T
T ss_pred -----------ccCCce--eeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc-----c
Confidence 578885 89999999999888888999998887642 22466666665544 5
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCC----ccccCCCCCC-CCCcEEEEcCCCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VKINLRSRNI-DGYDAIFLATHKFLGGPG 304 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~----~~id~~~~~~-~~~D~v~~S~hK~lggp~ 304 (625)
+++++++++++||||.+.+ +++|+++|+++++++|.|+++..-. ....+..... ..-.+++.|++|.++.|+
T Consensus 171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG 250 (418)
T d1w7la_ 171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATG 250 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGG
T ss_pred cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCC
Confidence 7899999999999999976 5688899999999999999965321 1122222111 122467789999988664
Q ss_pred -CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHH-HHHHHHH---Hh-hcCHH
Q 043646 305 -TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIR-AALAFWV---KE-YIGYE 378 (625)
Q Consensus 305 -g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~-aal~~~~---~~-~~g~~ 378 (625)
.+|++++++++.. .+.. .......+++++.+.+. .++.-.. .+ ..-..
T Consensus 251 ~RvG~~v~~~~~~~--~l~~------------------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 304 (418)
T d1w7la_ 251 WKVGWVLGPDHIMK--HLRT------------------------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFV 304 (418)
T ss_dssp GCCEEEECCHHHHH--HHHH------------------------HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHH
T ss_pred Ccccccccchhhhh--hhcc------------------------ccccccccccchhhHHHHHHhhhccccccccccccc
Confidence 5999999887621 1100 01111233444443321 1111110 00 01234
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCC-CCCChHHHHHHhhhhcCeeeec
Q 043646 379 VIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERN-KPLHGPFVATLFNDLFGIQARG 457 (625)
Q Consensus 379 ~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~-~~l~~~~v~~~L~~~~gI~v~~ 457 (625)
...++.+..++.+.+.|.++ |+++..| .++.+.|.-.+..... ....... ......++++.|++++||.+.+
T Consensus 305 ~~~~~~~~~r~~l~~~L~~~-g~~~~~P----~gg~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~gV~v~P 377 (418)
T d1w7la_ 305 QFPQAMQRCRDHMIRSLQSV-GLKPLIP----QGSYFLITDISDFKRK--MPDLPGAVDEPYDRRFVKWMIKNKGLVAIP 377 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEEEEC----SBSSEEEEECHHHHHH--CCCCCCCTTCCHHHHHHHHHHHHHCEECEE
T ss_pred cchhhhhhhhhhhhhhhhhc-CCcccCC----CceeEEEEECcccccc--cchhccccccccHHHHHHHHHHHCCEEEEc
Confidence 55666777788899999886 7887766 4577777654310000 0000000 0112456788888889999999
Q ss_pred CCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 458 GCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 458 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
|..|....... ..++++|||+. .++++++..+++|+++..
T Consensus 378 G~~F~~~~~~~----------------------~~~~~iRis~~--~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 378 VSIFYSVPHQK----------------------HFDHYIRFCFV--KDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp GGGGSCHHHHT----------------------TSCSEEEEECC--CCHHHHHHHHHHHHHHHC
T ss_pred chhhcCCCccC----------------------CCCCEEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 98876332110 02589999985 588999999999988754
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=8.7e-21 Score=199.37 Aligned_cols=331 Identities=11% Similarity=0.048 Sum_probs=225.7
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC--CCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ--ADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~--~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
++|+.+.+++.+.+..- .. .|....+..++.+.+.+++.+.+|.+. +++|++| +|++++|..++.++
T Consensus 39 ~~p~~i~~a~~~~~~~~----~~-~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt-~G~~~al~~~~~~l----- 107 (382)
T d1u08a_ 39 DGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVT-AGATEALYAAITAL----- 107 (382)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEE-SSHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhcC----CC-CCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEec-cchHHHHHHHHhhc-----
Confidence 56788999998877431 11 233334456777778888888888753 3358888 89999999999888
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
.++||. |+++.+.|+.+.......|+.++.++.+. ...+|++++++++. ++++++++++|+|
T Consensus 108 ----------~~~gd~--vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~l~~P~N 170 (382)
T d1u08a_ 108 ----------VRNGDE--VICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-----ERTRLVILNTPHN 170 (382)
T ss_dssp ----------CCTTCE--EEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-----TTEEEEEEESSCT
T ss_pred ----------ccccce--EEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhc-----cCccEEEECCCCc
Confidence 578885 88888899888888888999988888876 45789999988776 5899999999999
Q ss_pred ccccccCH---HHHHHHHHHcCCEEEEeccCcCCCccc----cCCCC-CCCCCcEEEEcCCCCCCCCC-CceEEEEeccc
Q 043646 245 VTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVKI----NLRSR-NIDGYDAIFLATHKFLGGPG-TPGILLISKAL 315 (625)
Q Consensus 245 ~TG~~~~l---~~I~~la~~~g~~vivD~A~~~g~~~i----d~~~~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~ 315 (625)
|||.+.+. ++|+++|.+++++++.|+......... ..... .....-++..|+.|.++.|+ .+|++++++++
T Consensus 171 PtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~ 250 (382)
T d1u08a_ 171 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI 250 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHH
T ss_pred ccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchh
Confidence 99999875 566777788999999998855322111 00000 00012367788999998664 49999988776
Q ss_pred cccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q 043646 316 YQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L 395 (625)
.. .+. ........+++.+.+.+. ..++.......+.++++.++.++.+.+.+
T Consensus 251 ~~--~~~------------------------~~~~~~~~~~~~~~q~a~--~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (382)
T d1u08a_ 251 SA--EIR------------------------KVHQYLTFSVNTPAQLAL--ADMLRAEPEHYLALPDFYRQKRDILVNAL 302 (382)
T ss_dssp HH--HHH------------------------HHHHHHTSSCCHHHHHHH--HHHHHHCTHHHHTHHHHHHHHHHHHHHHT
T ss_pred HH--HHH------------------------hhhccccccccccccccc--ccccccchHHHHHHHHHHHhhhhhhhhhh
Confidence 21 110 001112234444444322 12221122224455666677778888887
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
.. .++.+..+ .++.+.|.-.+.. ...+..++++.|++++||.+.+|..|+..
T Consensus 303 ~~-~g~~~~~p----~gg~~~~~~~~~~------------~~~d~~e~~~~ll~e~gV~v~PG~~F~~~----------- 354 (382)
T d1u08a_ 303 NE-SRLEILPC----EGTYFLLVDYSAV------------STLDDVEFCQWLTQEHGVAAIPLSVFCAD----------- 354 (382)
T ss_dssp TS-SSCEECCC----CBSSEEEEECTTT------------CCSCHHHHHHHHHHHSCEECEEGGGGCSS-----------
T ss_pred cc-CCcEEecC----CceEEEEEecCCC------------CCCCHHHHHHHHHHHCCEEEEcchhhCCC-----------
Confidence 65 47888765 4566666655432 13457788888878899999999877521
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
+...+++|||+. .++++++..++.|++
T Consensus 355 --------------~~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 355 --------------PFPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp --------------CCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred --------------CCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 012489999996 478888888887764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=7.3e-21 Score=196.26 Aligned_cols=311 Identities=14% Similarity=0.021 Sum_probs=202.4
Q ss_pred CceEeccCCCC-CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHH
Q 043646 76 RRLTYADHTAS-GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAA 152 (625)
Q Consensus 76 ~~~~Yld~~~~-~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaa 152 (625)
++++||+.+.. .+.|+.+.+++.+.+... ....+ ...+ ..++|+.++++++.. +.++|++| +|++++
T Consensus 19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~----~~~~y-p~~g----~~~Lr~aia~~~~~~~v~~d~I~it-~G~~~~ 88 (334)
T d2f8ja1 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD----ALRIY-YDSP----DEELIEKILSYLDTDFLSKNNVSVG-NGADEI 88 (334)
T ss_dssp CCSEECSSCCCSSCCCHHHHHHHHHHCCTT----GGGSC-CCSS----CHHHHHHHHHHHTCSSCCGGGEEEE-EHHHHH
T ss_pred CCceEEECCCCCCCCCHHHHHHHHHHhhcc----hhcCC-CCCC----cHHHHHHHHHHhcccCCCcceEEec-CcchhH
Confidence 67999987643 467788999988877431 00001 1111 234777888877643 23389998 899999
Q ss_pred HHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 153 IKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
|..++.. +|+ |++.++.|+.+...++..|++++.||+++++..+. +. .+
T Consensus 89 l~~l~~~-------------------~d~--v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~-----~~-----~~ 137 (334)
T d2f8ja1 89 IYVMMLM-------------------FDR--SVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPE-----VN-----VG 137 (334)
T ss_dssp HHHHHHH-------------------SSE--EEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCCC-----CC-----CC
T ss_pred HHHHhhh-------------------ccc--cccccccccccccchhccCCccccccccccccccc-----cc-----cc
Confidence 9887543 454 88888899999888899999999999987654431 11 15
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEE
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPG-TPGILLI 311 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v 311 (625)
+++++++++|+||||.+.+.++|.++ .++++++++|+++.................-+++.|++|.++.|+ .+|+++.
T Consensus 138 ~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~ 216 (334)
T d2f8ja1 138 EGDVVFIPNPNNPTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVA 216 (334)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEE
T ss_pred cceEEEecccccccceeecHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhccc
Confidence 78999999999999999999888775 467999999998543211111111111123477789999998675 5999999
Q ss_pred eccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 043646 312 SKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESA 391 (625)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l 391 (625)
++++.. .+.... ...+.....+. ++.++. ......+...++.++.++++
T Consensus 217 ~~~~i~--~l~~~~--------------------------~~~~~s~~~~~--~a~~~l-~~~~~~~~~~~~~~~~r~~l 265 (334)
T d2f8ja1 217 SEKFID--AYNRVR--------------------------LPFNVSYVSQM--FAKVAL-DHREIFEERTKFIVEERERM 265 (334)
T ss_dssp CHHHHH--HHHHHS--------------------------CTTCSCHHHHH--HHHHHH-HTHHHHHHHHHHHHHHHHHH
T ss_pred chHHHH--HHHHhh--------------------------cccccchhhhh--hccccc-ccccchhhHHHHHHHHHHHH
Confidence 888732 110000 00111111111 112222 22223445556666677788
Q ss_pred HHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhc
Q 043646 392 LGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLA 471 (625)
Q Consensus 392 ~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~ 471 (625)
.+.|+++ |+++..+. ++ +.+...+.. +..++.+.|.+ +||.+++.
T Consensus 266 ~~~L~~~-g~~~~~~~----g~-f~~~~~~~~---------------~~~~~~~~L~~-~GI~vr~~------------- 310 (334)
T d2f8ja1 266 KSALREM-GYRITDSR----GN-FVFVFMEKE---------------EKERLLEHLRT-KNVAVRSF------------- 310 (334)
T ss_dssp HHHHHHH-TCEECCCC----SS-EEEEECCHH---------------HHHHHHHHHHH-TTEECEEE-------------
T ss_pred HHHHHHC-CCeECCCC----ce-EEEEECCCC---------------CHHHHHHHHHH-CCCEECCC-------------
Confidence 8888887 78886542 34 333332211 35678888865 79999731
Q ss_pred CChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 472 FDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 472 ~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
++++|||++ +.+|+++++++|++
T Consensus 311 ---------------------~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 311 ---------------------REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp ---------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred ---------------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 388999998 78999999999985
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.86 E-value=1.7e-20 Score=198.36 Aligned_cols=315 Identities=13% Similarity=0.073 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHH
Q 043646 119 MTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLL 196 (625)
Q Consensus 119 ~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (625)
..++.+.+.+++.+.+|.+ ++ +|++| +|+++++..++.++ +++||+ |+++.+.|+.+..
T Consensus 73 ~~~lR~aia~~l~~~~g~~~~~~-~I~it-~G~~~al~~~~~~l---------------~~~gd~--v~~~~P~y~~~~~ 133 (403)
T d1wsta1 73 FTPLRLALARWMEKRYDIPMSKV-EIMTV-AGSQQALDLIGRVF---------------LNPGDP--IVVEAPTYLAAIQ 133 (403)
T ss_dssp CHHHHHHHHHHHHHHHCCCCTTC-EEEEE-SSHHHHHHHHHHHH---------------CCTTCE--EEEEESCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCChH-Heeec-ccchHHHHHHHHHH---------------hhcCCc--cccCCCcchhhhH
Confidence 4556666777777667654 44 89998 89999999998887 578886 8889999999988
Q ss_pred HHHHcCCeEEEEecCCCCCCCHHHHHHHHHH--hhhCCCCeEEEEecccCccccccCH---HHHHHHHHHcCCEEEEecc
Q 043646 197 SWRQSLAEVVEIGLDDNGLLDIEALRSQLEL--YKAAKRPMLGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFA 271 (625)
Q Consensus 197 ~~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~--~~~~~~~~lv~~~~~~n~TG~~~~l---~~I~~la~~~g~~vivD~A 271 (625)
.+...|++++.|+.+..+. +...+...... ......+.++++++++||||.+.+. ++|+++|++||+++|+|++
T Consensus 134 ~~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~ 212 (403)
T d1wsta1 134 AFKYYDPEFISIPLDDKGM-RVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGP 212 (403)
T ss_dssp HHHTTCCEEEEEEEETTEE-CHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred HHhhccccceeEeecccCC-ccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccc
Confidence 8898999999999876432 22222222211 0112356788899999999999774 6788899999999999999
Q ss_pred CcCC----CccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccc
Q 043646 272 ASGP----YVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLED 347 (625)
Q Consensus 272 ~~~g----~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (625)
+..- .....+......+..+++.|++|+++....+|+++.++++.. .+..
T Consensus 213 y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i~--~~~~------------------------ 266 (403)
T d1wsta1 213 YSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLIR--KMEI------------------------ 266 (403)
T ss_dssp TTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHHH--HHHH------------------------
T ss_pred hhheecCCCCCCcccccCCCCcEEEEccccceecCcccccccccchHHHH--HHHH------------------------
Confidence 7521 111111111112456778899999962235899999887732 1100
Q ss_pred hhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCC
Q 043646 348 IEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNS 425 (625)
Q Consensus 348 ~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~ 425 (625)
.......+.+...+.+.+++..........+.+.+.....++.+.+.|.+. .++.+..| .++.+.|...++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p----~gg~~~~~~~~~--- 339 (403)
T d1wsta1 267 AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP----EGGMFVRVTLPE--- 339 (403)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEECCT---
T ss_pred HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC----CceeEEEEECCC---
Confidence 001111222222222211111100011123444555555566666666542 35666655 346666666553
Q ss_pred CCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCC
Q 043646 426 SPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMS 505 (625)
Q Consensus 426 ~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t 505 (625)
+++..++++.|.+ +||.+.+|..|... +-.++++||+++. .+
T Consensus 340 -----------~~~~~~~~~~l~~-~gV~v~pg~~f~~~-------------------------~~~~~~iRi~~~~-~~ 381 (403)
T d1wsta1 340 -----------GIDTKLMMERAVA-KGVAYVPGEAFFVH-------------------------RDKKNTMRLNFTY-VP 381 (403)
T ss_dssp -----------TCCTTTTHHHHHH-TTEECEEGGGGSTT-------------------------CCCCSEEEEECSS-SC
T ss_pred -----------CCCHHHHHHHHHH-CCEEEEechhhcCC-------------------------CCCCCEEEEEecC-CC
Confidence 2345578888865 79999998766421 0035899999964 57
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 043646 506 NEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 506 ~edid~ll~aL~~~~~~~~ 524 (625)
+++++..++.|++++++..
T Consensus 382 ~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 382 EETIREGVRRLAETIKEEM 400 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999887643
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=5.9e-20 Score=193.32 Aligned_cols=332 Identities=11% Similarity=0.010 Sum_probs=213.8
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhccccc
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRLQEVMGITVP 165 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~ 165 (625)
++|+.+.+++.+...... .|....+..++.+.+.+++.+..|.+ ++ +|++| +|++++|..++.++
T Consensus 41 ~~p~~~~~al~~~~~~~~------~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it-~G~~~~l~~~~~~l----- 107 (389)
T d2gb3a1 41 KTPEVFFERIYENKPEVV------YYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVT-NGGSEAILFSFAVI----- 107 (389)
T ss_dssp CCCTHHHHHHHHTCCSSC------CCCCTTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEE-SHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHhcCCCCC------CCCCCcCCHHHHHHHHHHHHHhcCCCcccc-eEEec-cccccccccccccc-----
Confidence 457788888876543221 23233335667777777777777764 44 89998 89999999998887
Q ss_pred chhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCCC-CCCHHHHHHHHHHhhhCCCCeEEEEecccC
Q 043646 166 SIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDNG-LLDIEALRSQLELYKAAKRPMLGSFSACSN 244 (625)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~~-~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n 244 (625)
+++|+. |++..+.|+......+..|+.++.++.+.++ ..+.+.+...+. ++++++++++|+|
T Consensus 108 ----------~~~gd~--V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~nP~N 170 (389)
T d2gb3a1 108 ----------ANPGDE--ILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN-----ERTKGIVLSNPCN 170 (389)
T ss_dssp ----------CCTTCE--EEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC-----TTEEEEEEESSCT
T ss_pred ----------ccCCCe--EEEeCCCCccccccccccCccccccccccccccchhhhhhhhcc-----cCccEEEeCCCCc
Confidence 578885 8888888888888888899999999987643 334344444333 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHcCCEEEEeccCcCCCccccCCC-C-CCCCCcEEEEcCCCCCCCCC-CceEEEEecccccc
Q 043646 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKINLRS-R-NIDGYDAIFLATHKFLGGPG-TPGILLISKALYQL 318 (625)
Q Consensus 245 ~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~~-~-~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l 318 (625)
|||.+.+ +++|+++|++|++++|.|++++.-...-.... . ......+++.|+.|.++.|+ .+|+++.++....
T Consensus 171 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~- 249 (389)
T d2gb3a1 171 PTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELI- 249 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHH-
T ss_pred cccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHH-
Confidence 9999977 67889999999999999999653221111110 0 11133567778889988775 4899988765421
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
.... ........++..+.. ++..++.....-.+.++++.+..++++.+.|+++
T Consensus 250 ~~~~--------------------------~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 302 (389)
T d2gb3a1 250 SHAM--------------------------KLAQGRLAPPLLEQI-GSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH 302 (389)
T ss_dssp HHHH--------------------------HHHHHSCCCCHHHHH-HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHh--------------------------hhhhccccccccccc-cccccccccchhcccccccccccchhhhhhhhhh
Confidence 0000 000111222222221 1112211011224566677778888999999888
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhh-----cCeeeecCCCCCchhhHhhhcCC
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDL-----FGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~-----~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
++.....+ .++.+.+.-.+.. +..++++.|+++ .||.+.+|..|...
T Consensus 303 ~~~~~~~p----~~g~~~~~~lp~~---------------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~--------- 354 (389)
T d2gb3a1 303 GLKRFTKP----SGAFYITAELPVE---------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLT--------- 354 (389)
T ss_dssp TCCCBCCC----SBSSEEEEECSSS---------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSS---------
T ss_pred ccccccCC----CceEEEEEeCCCC---------------CHHHHHHHHHHhhhhhhCCEEEEeCcccccC---------
Confidence 55544443 3456655554432 356788777654 46677777655421
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.|..++++||++. .+++++++.++.|++.++.
T Consensus 355 ---------------~~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~ 386 (389)
T d2gb3a1 355 ---------------PGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKM 386 (389)
T ss_dssp ---------------TTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHH
Confidence 1113589999986 5788888888888776654
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=7.9e-20 Score=186.56 Aligned_cols=319 Identities=11% Similarity=0.025 Sum_probs=196.8
Q ss_pred CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccc
Q 043646 87 GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPS 166 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (625)
+++.|.|++++.+.... +. .++...+..+++++++++++|.+. +++||++||.+++..+..+
T Consensus 13 ~g~~P~v~~A~~~a~~~-----~~----~~~~~~~~~~~l~~~la~~~g~~~--~v~f~~sGt~An~~a~~~~------- 74 (345)
T d1v72a1 13 AGASPEVAQALVKHSSG-----QA----GPYGTDELTAQVKRKFCEIFERDV--EVFLVPTGTAANALCLSAM------- 74 (345)
T ss_dssp CCCCHHHHHHHHHTTSS-----CC----CSTTCSHHHHHHHHHHHHHHTSCC--EEEEESCHHHHHHHHHHTS-------
T ss_pred CCCCHHHHHHHHHHhcc-----Cc----cccCCCHHHHHHHHHHHHHHCCCc--EEEECCchHHHHHHHHHHH-------
Confidence 34566899999875421 11 122244678899999999999753 6899977777765544322
Q ss_pred hhhhhhhhccCCCCceEEEEcCCCCchhHHHH---HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCe-EEEEec
Q 043646 167 IMRDKLITSLRDEERWVVFLGPYEHHSNLLSW---RQSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPM-LGSFSA 241 (625)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~-lv~~~~ 241 (625)
..++++ +++....|.+....+ ...+..+..++.+.++.++++.+++.+..... ...+. .++...
T Consensus 75 ---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (345)
T d1v72a1 75 ---------TPPWGN--IYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSIT 143 (345)
T ss_dssp ---------CCTTEE--EEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEE
T ss_pred ---------HhcCCc--cccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeee
Confidence 245554 778888888776443 34577777777777889999999999874211 11233 334444
Q ss_pred ccCccccc---cCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCC----CCCcEEEEcCCCCCCCCCCceEEEEecc
Q 043646 242 CSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNI----DGYDAIFLATHKFLGGPGTPGILLISKA 314 (625)
Q Consensus 242 ~~n~TG~~---~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~----~~~D~v~~S~hK~lggp~g~G~l~v~~~ 314 (625)
+.|+.|.. .+++++.++|++||+++++|+++..+....+...... ...+.++.+.+|.. +...+..+....
T Consensus 144 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 221 (345)
T d1v72a1 144 QATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLAAEAIVLFNT 221 (345)
T ss_dssp SSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSSCEEEEESSG
T ss_pred ccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccc--cccccccccchh
Confidence 44555554 5578888899999999999999875433332222210 12345555655544 333344444433
Q ss_pred ccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q 043646 315 LYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV-QMIRAALAFWVKEYIGYEVIKKQEDVYIESALG 393 (625)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~-~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~ 393 (625)
..... . ........++.+.. ..+.++.... ..........+...+..++.+
T Consensus 222 ~~~~~-------------------------~-~~~~~~~~~~~~~~~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 273 (345)
T d1v72a1 222 SLATE-------------------------M-SYRRKRAGHLSSKMRFLSAQIDAYL--TDDLWLRNARKANAAAQRLAQ 273 (345)
T ss_dssp GGHHH-------------------------H-HHHHHHTTCCCSSTHHHHHHHHHHT--STTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh-------------------------c-cccccccccccchhhHHhhhhHHHH--HHhhhhhhccchhhHHHHHHH
Confidence 31000 0 00111112222222 2222222221 333455667777788889999
Q ss_pred hhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC
Q 043646 394 RILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD 473 (625)
Q Consensus 394 ~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~ 473 (625)
.|.+++++++..+. ..+++.+.+ + ..+++.|++ .||.+..+..
T Consensus 274 ~l~~~~g~~~~~p~---~~niv~~~~-~-------------------~~~~~~L~~-~gi~v~~~~~------------- 316 (345)
T d1v72a1 274 GLEGLGGVEVLGGT---EANILFCRL-D-------------------SAMIDALLK-AGFGFYHDRW------------- 316 (345)
T ss_dssp HHTTCTTEEEESCC---CSSEEEEEE-C-------------------HHHHHHHHH-TTCBCBCSSS-------------
T ss_pred HHHhcCCcEeccCC---CccEEEEEc-C-------------------HHHHHHHHH-cCCCccccCC-------------
Confidence 99999999998875 234554433 2 256777755 6988754321
Q ss_pred hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 474 QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 474 ~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++.+||+++.++|+||||+++++|+++
T Consensus 317 ------------------~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 317 ------------------GPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp ------------------STTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2488999999999999999999999874
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.82 E-value=2.9e-19 Score=186.80 Aligned_cols=334 Identities=11% Similarity=-0.027 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
.++++++.+++++|.+ .+++++|||+ |+..++.+++ +.++|+.+|++++.+++++..++...
T Consensus 32 ~v~~fE~~~~~~~g~k---~ai~~~Sgt~-Al~~al~al~--------------~~~~~~~eVi~p~~t~~a~~~ai~~~ 93 (371)
T d2fnua1 32 RSLLFEEALCEFLGVK---HALVFNSATS-ALLTLYRNFS--------------EFSADRNEIITTPISFVATANMLLES 93 (371)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHHHHHSS--------------CCCTTSCEEEECSSSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEEecHHH-HHHHHHHHhc--------------ccCCCCCeeecccccccccceeeecc
Confidence 4777899999999987 4567756555 5777777775 45666557999999999999999999
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccC
Q 043646 202 LAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINL 281 (625)
Q Consensus 202 G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~ 281 (625)
|++++.++++.+..++.++++++++ +++++|+++| ..|...++++|.++|+++|++++.|+||+.|...-.-
T Consensus 94 G~~pv~vDi~~~~~~~~~~~~~~~~-----~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~ 165 (371)
T d2fnua1 94 GYTPVFAGIKNDGNIDELALEKLIN-----ERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNK 165 (371)
T ss_dssp TCEEEECCBCTTSSBCGGGSGGGCC-----TTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE
T ss_pred Ccccccccccccccccchhhhhhcc-----chhhcccccc---ccccccccccccccccccchhhccchhhccCceeccc
Confidence 9999999999887777788877776 6899988876 4599999999999999999999999999998754333
Q ss_pred CCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHH
Q 043646 282 RSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQ 361 (625)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 361 (625)
..+..+.+.++++...|.+.+..| |+++.++.-. .+.+...... |..... ........-++..-...+
T Consensus 166 ~~G~~g~~~~~Sf~~~K~l~~g~G-G~i~t~~~~~-~~~~~~~~~~-g~~~~~-------~~~~~~~~~G~n~r~sel-- 233 (371)
T d2fnua1 166 KVGGFALASVFSFHAIKPITTAEG-GAVVTNDSEL-HEKMKLFRSH-GMLKKD-------FFEGEVKSIGHNFRLNEI-- 233 (371)
T ss_dssp ETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHH-HHHHHHHTBT-TEEESS-------SSCEEESSCCCBCCCCHH--
T ss_pred cCCccccccccccccccccccccc-eEEEeechhh-hhhccccccc-cccccc-------ccccccccccccccccch--
Confidence 222222334444555799876554 7887776431 1112111111 110000 000000000111111222
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCC--CcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 362 MIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVK--RQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~--~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
++++... +....+.+.++.+.++.++.+.|.+++++.+..+.... ....+.+.+.... ...
T Consensus 234 --~Aaigl~--qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~ 296 (371)
T d2fnua1 234 --QSALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF-------------FTC 296 (371)
T ss_dssp --HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG-------------GGG
T ss_pred --hhhhhhh--hhhhccchhhhhhhhhhhhcccccccccccccccccccccccccccccccccc-------------hhH
Confidence 2233322 22346677777778899999999999998887543221 2223333332211 112
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCc--hhhHhhhcCC-hhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAG--PYGHTLLAFD-QTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~--~~~~~~l~~~-~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
..++.+.|. ..||.++....+-. +....+...+ -+.+..+ ....+.|.+++.+|.+|++++++.|
T Consensus 297 r~~~~~~L~-~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~-----------~~~~l~LP~~~~lt~~di~~I~~~i 364 (371)
T d2fnua1 297 KKLILESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDF-----------YHAEISLPCHANLNLESVQNIAHSV 364 (371)
T ss_dssp HHHHHHHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCCcceeCcccccCHHHHhccccCCCHHHHHH-----------HhCeEECcCCCCCCHHHHHHHHHHH
Confidence 457888885 47999886543211 1111111111 1222222 2367999999999999999999999
Q ss_pred HHHHHh
Q 043646 517 EFIAAY 522 (625)
Q Consensus 517 ~~~~~~ 522 (625)
+++++.
T Consensus 365 ~~~~~~ 370 (371)
T d2fnua1 365 LKTFES 370 (371)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 988764
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.80 E-value=4.2e-18 Score=178.65 Aligned_cols=331 Identities=13% Similarity=0.084 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
.++++++++++++|.+ .+++++|||+| |.+++.+++ +++||+ |++++.+++++..++...
T Consensus 35 ~v~~fE~~~a~~~g~~---~~v~~~SGt~A-l~lal~~l~--------------~~~gde--Vi~p~~t~~a~~~ai~~~ 94 (384)
T d1b9ha_ 35 EVNSFEREFAAHHGAA---HALAVTNGTHA-LELALQVMG--------------VGPGTE--VIVPAFTFISSSQAAQRL 94 (384)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEESCHHHH-HHHHHHHTT--------------CCTTCE--EEEESSSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEeCCHHHH-HHHHHHHcC--------------CCCCCE--EEEecccccccccccccc
Confidence 4677899999999987 45677566665 777777774 688996 999999999999999999
Q ss_pred CCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 202 LAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 202 G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
|++++.+++++ ++.+|++.+++.++ +++++|+++ ++.|...++++|.++|+++|++++.|+||+.|...-.
T Consensus 95 g~~p~~~d~~~~~~~~d~~~~~~~i~-----~~tk~i~~~---~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g 166 (384)
T d1b9ha_ 95 GAVTVPVDVDAATYNLDPEAVAAAVT-----PRTKVIMPV---HMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQG 166 (384)
T ss_dssp TCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT
T ss_pred ccccccccccccccccchhhhccccc-----ccccccccc---cccccccccccchhhhhhhhhhhhhhhceecccccCC
Confidence 99999999886 67899999999887 688888655 4668999999999999999999999999998875322
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcc-cCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPST-CGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
-..+....+.++++++.|.+++..| |+++++++-.. +.++... .|.+. ......|... ..++..-..++
T Consensus 167 ~~~g~~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~~-~~~~~~~~~g~~~-------~~~~~~~~~~-~~G~n~rms~l 236 (384)
T d1b9ha_ 167 KRVGELDSIATFSFQNGKLMTAGEG-GAVVFPDGETE-KYETAFLRHSCGR-------PRDDRRYFHK-IAGSNMRLNEF 236 (384)
T ss_dssp EEGGGSSSCEEEECCTTSSSCSSSC-EEEEECTTCHH-HHHHHHHHTBTTC-------CTTCSSCCCC-SCCCBCBCBHH
T ss_pred EecCcccccceeccccccccccccc-chhhhhhHHHH-HHHHHHHhcCCCC-------cccccccccc-ccccccccccc
Confidence 2111122344556667899976665 88887654311 1111111 11111 0000011000 00011111222
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC-CCCcc--eEEEEeccCCCCCCccccccCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS-VKRQA--ILSFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~-~~~~~--i~~f~~~~~~~~~~~~~~~~~~~ 436 (625)
.|++... +....+.+.++.+++++++.+.|++++++....... ..+.. .+.|.+....
T Consensus 237 ----~Aaig~~--qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------- 297 (384)
T d1b9ha_ 237 ----SASVLRA--QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT------------- 297 (384)
T ss_dssp ----HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC-------------
T ss_pred ----hhhhhhh--hhhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccc-------------
Confidence 2222222 223466777777888999999999998887654322 12222 2333332111
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCC------------hhhHHHHHHHHHhCCCCCCCcEEEEecCCCC
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFD------------QTRSLEIRSAIQKGYLGVKPGWTRITFPYYM 504 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~------------~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~ 504 (625)
.-....+.+.|.+ .||.++..+..- .....+..++ -+.+..+ ....++|.++..+
T Consensus 298 ~~~Rd~l~~~L~~-~GI~~~~~y~pl-h~~~~~~~~~~~~~~~~~~~~~~Pna~~l-----------~~~~l~LP~~~~L 364 (384)
T d1b9ha_ 298 EERRNALVDRLVE-AGLPAFAAFRAI-YRTDAFWELGAPDESVDAIARRCPNTDAI-----------SSDCVWLHHRVLL 364 (384)
T ss_dssp HHHHHHHHHHHHH-TTCCEEECCCCG-GGSHHHHHSSCCSSCHHHHHHTCHHHHHH-----------HHHEEEEEGGGGG
T ss_pred cccHHHHHHHHHH-CCCCeeeeCcch-hcCHHHHhcCCCcccccccccCCHHHHHH-----------HhCEEEccCCCCC
Confidence 0013468899955 799988654211 0001111110 0111111 2367999998887
Q ss_pred C-HHHHHHHHHHHHHHHHh
Q 043646 505 S-NEEFEFILAALEFIAAY 522 (625)
Q Consensus 505 t-~edid~ll~aL~~~~~~ 522 (625)
| ++|++++++.|+++++.
T Consensus 365 t~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 365 AGEPELHATAEIIADAVAR 383 (384)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 7 68999999999998764
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=3.1e-19 Score=186.22 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHHHH
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSWRQ 200 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~ 200 (625)
..+++++..++.++..+.+.++++ +|+++++..++.++ .+++. +|+++ .+.|+++..+++.
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~-~~~~~a~~~~l~al----------------~~~~~-vi~~~~~~~~~~~~~~~~l 112 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGF-NRTSSAILATILAL----------------KPKKV-IHYLPELPGHPSIERSCKI 112 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHHHHHHH----------------CCSEE-EEECSSSSCCTHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCccEEEEe-CCHHHHHHHHHHHh----------------CCCCE-EEEecCCCcchhHHHHHHh
Confidence 345677778888888766567777 56677677666665 35554 44554 4789999999999
Q ss_pred cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcc-ccccCHHHHHHHHHHcCCEEEEeccCcCCCccc
Q 043646 201 SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVT-GIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279 (625)
Q Consensus 201 ~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~T-G~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i 279 (625)
.|++++ +.+ |+++|+++++ ++|++|++++++|++ +.+.++++|+++||+||+++++|++++.+....
T Consensus 113 ~g~~~v--~~~-----d~e~l~~~i~-----~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~ 180 (366)
T d2aeua1 113 VNAKYF--ESD-----KVGEILNKID-----KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLL 180 (366)
T ss_dssp TTCEEE--EES-----CHHHHHTTCC-----TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred cCCeEE--CCC-----CHHHHHHhcC-----CCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCcccccccc
Confidence 999854 333 7999999888 689999999998875 467899999999999999999999987543322
Q ss_pred cCCCC-CCCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 280 NLRSR-NIDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 280 d~~~~-~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
..... ...++|++++|+||+++|+. .|+++.++++.
T Consensus 181 ~~~~~~~~~~~di~~~S~sK~~~g~~-~G~i~~~~~~i 217 (366)
T d2aeua1 181 FNQPPALKLGADLVVTSTDKLMEGPR-GGLLAGKKELV 217 (366)
T ss_dssp TTCCCHHHHTCSEEEEETTSSSSSCS-CEEEEEEHHHH
T ss_pred ccCCCHhhcCceEEEecccccccccc-eeEEEecHHHH
Confidence 22110 01278999999999999876 59999999883
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=8.2e-18 Score=174.23 Aligned_cols=313 Identities=15% Similarity=0.199 Sum_probs=194.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
+.+++......+.+++.|+++-|+.. .++|. ||..| +..++.++ +++||. |+++...|.
T Consensus 51 ~~Y~R~~nPT~~~LE~~la~LEg~~~--a~~~~-SGmaA-i~~~l~~l---------------~~~Gd~--vl~~~~~Yg 109 (392)
T d1gc0a_ 51 HFYSRISNPTLNLLEARMASLEGGEA--GLALA-SGMGA-ITSTLWTL---------------LRPGDE--VLLGNTLYG 109 (392)
T ss_dssp ------CCHHHHHHHHHHHHHHTCSE--EEEES-SHHHH-HHHHHHHH---------------CCTTCE--EEEESSCCS
T ss_pred ceecCCCChHHHHHHHHHHHHhCCcc--eeehh-hHHHH-HHHHHHhh---------------ccCCCe--eecccccch
Confidence 33455555567789999999999753 35663 66555 55555555 578985 888777777
Q ss_pred hhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEE
Q 043646 193 SNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268 (625)
Q Consensus 193 s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~viv 268 (625)
.....+. ..|+++.+++.. |++.++++++ ++|++|.+..++||+..+.|+++|+++||++|++++|
T Consensus 110 ~t~~l~~~~~~~~Gi~~~~~d~~-----d~~~~~~ai~-----~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vv 179 (392)
T d1gc0a_ 110 CTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT-----PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 179 (392)
T ss_dssp HHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEE
T ss_pred hhhhhhhhhhccCCcccccCCcc-----CHHHHHHhCC-----CCCeEEEecccccceeeecchHHHHHHHHhcCCEEEE
Confidence 7765543 359999998754 7899999998 6899999999999999999999999999999999999
Q ss_pred eccCcCCCc--cccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeecccccccccc
Q 043646 269 DFAASGPYV--KINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLY 344 (625)
Q Consensus 269 D~A~~~g~~--~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (625)
|.+.+.|+. |+++ |+|+++.|..|+++|-.. .|++++++.... ..+-.
T Consensus 180 DnT~atP~~~~Pl~~------GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~--~~r~~-------------------- 231 (392)
T d1gc0a_ 180 DNTYCTPYLQRPLEL------GADLVVHSATKYLSGHGDITAGIVVGSQALVD--RIRLQ-------------------- 231 (392)
T ss_dssp ECTTTHHHHCCGGGG------TCSEEEEETTTTTTCSSSCCCEEEEECHHHHH--HHHHT--------------------
T ss_pred ecCccCccccChHHh------CCCEEEEecceeecCCcccccccccchhHHHH--HHHHH--------------------
Confidence 999776544 4433 899999999999987542 577777776521 10000
Q ss_pred ccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CC
Q 043646 345 LEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VK 410 (625)
Q Consensus 345 ~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~ 410 (625)
..+....++++....... +.....+..+.++..+++..+.+.|++.|.++ |+.|.- ..
T Consensus 232 ---~~~~~~G~~~~p~da~ll-----~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~ 303 (392)
T d1gc0a_ 232 ---GLKDMTGAVLSPHDAALL-----MRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQ 303 (392)
T ss_dssp ---HHHHHTCCCCCHHHHHHH-----HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------C
T ss_pred ---HHHHccCCcCChhhHHHH-----HhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccC
Confidence 011112233332221110 11222344455566667888999999888875 444310 12
Q ss_pred CcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhC
Q 043646 411 RQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 411 ~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
.++.++|.+..+.. ....+.+.| +.+.+.+.-|...+- |..-.+..+..+.-.+
T Consensus 304 ~gg~~sf~l~~~~~--------------~~~~f~~~L-~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~-------- 360 (392)
T d1gc0a_ 304 PGGMIAFELKGGIG--------------AGRRFMNAL-QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAH-------- 360 (392)
T ss_dssp CTTEEEEEETTHHH--------------HHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHH--------
T ss_pred CCcEEEEEEeCCHH--------------HHHHHHHhC-CcceEeeccCCcChhhcCccccccccCCHHHHHH--------
Confidence 36788888753210 012344444 334444444443221 2222222333222111
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 488 YLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 488 ~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.|+.++.||||+|. ||.+.+++-|++.+
T Consensus 361 -~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL 388 (392)
T d1gc0a_ 361 -YGISEGLVRLSVGL----EDIDDLLADVQQAL 388 (392)
T ss_dssp -TTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred -cCCCcCeEEEEeee----CCHHHHHHHHHHHH
Confidence 47788999999996 44555555554443
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.5e-17 Score=171.04 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=222.3
Q ss_pred CcchHHHHHHHHHhhCCCCC--CCCCCcchhhHHH-HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFYG--NTHTSDSYVGQRM-TKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~--n~~~~~~~~~~~~-~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
...++.|++++...+...|+ .|+.- |..|... .++..-+.++.+++||+... .|-.. ||+.+++..+...
T Consensus 36 N~~S~~v~~a~~S~l~nkYaeG~pg~R-yy~G~~~iD~iE~la~~ra~~lF~a~~a-nVqp~-SGs~AN~av~~Al---- 108 (416)
T d1dfoa_ 36 NYTSPRVMQAQGSQLTNKYAEGYPGKR-YYGGCEYVDIVEQLAIDRAKELFGADYA-NVQPH-SGSQANFAVYTAL---- 108 (416)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHHHHHHHHHHH----
T ss_pred ccCCHHHHHHhcCcccCcccCCCCCCc-ccCCChhHHHHHHHHHHHHHHHhCCCcc-eeecc-cCccHHHHHHHHh----
Confidence 34567889988777755543 34432 3344444 44555677888999999755 55565 8999987766543
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCCCCchhHHH-----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS-----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGS 238 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~ 238 (625)
++|||+ |+..+..|...... ......+.+.++++.++.+|.+++++...+ .+|++|+
T Consensus 109 ------------l~pGD~--Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~----~kPklIi 170 (416)
T d1dfoa_ 109 ------------LEPGDT--VLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKE----HKPKMII 170 (416)
T ss_dssp ------------CCTTCE--EEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHH----HCCSEEE
T ss_pred ------------cCCCCe--eeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHH----hccceEE
Confidence 589996 88877666655421 122245778888888889999999999886 4899998
Q ss_pred EecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 239 ~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
+.. +......|.+++.++|++.|+++++|.||..|.+.-.+-.-....+|++++|.||.|.||.| |+++.++....+
T Consensus 171 ~G~--S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrg-giI~~~~~~~~~ 247 (416)
T d1dfoa_ 171 GGF--SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGSEEL 247 (416)
T ss_dssp EEC--SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSC-EEEEESSCCHHH
T ss_pred ecc--cccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCc-eEEEeccchHhH
Confidence 875 34567789999999999999999999999866543322222223579999999999999997 888886432100
Q ss_pred -CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhh
Q 043646 319 -GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYI--GYEVIKKQEDVYIESALGRI 395 (625)
Q Consensus 319 -~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~--g~~~i~~~~~~l~~~l~~~L 395 (625)
+.+.... -..-.|.|-...+++.|.++. +.. ......+++..+++.|.+.|
T Consensus 248 ~~~i~~av------------------------fPg~qggp~~~~iaa~Aval~--Ea~~~~fk~Y~~qvv~NA~~La~~L 301 (416)
T d1dfoa_ 248 YKKLNSAV------------------------FPGGQGGPLMHVIAGKAVALK--EAMEPEFKTYQQQVAKNAKAMVEVF 301 (416)
T ss_dssp HHHHHHHH------------------------TTTTCSSCCHHHHHHHHHHHH--HTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhh------------------------CcccccCccHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 0110000 000123344444444444443 322 34466777888899999999
Q ss_pred CCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChh
Q 043646 396 LPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQT 475 (625)
Q Consensus 396 ~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~ 475 (625)
.+. |++++... .....+.+.+.+ .++++.++.+.| ++.||.+..-+.+..+...
T Consensus 302 ~~~-G~~iv~gg--TdnHlvlvdl~~--------------~~~~G~~a~~~L-e~~gI~~Nkn~iP~d~~~~-------- 355 (416)
T d1dfoa_ 302 LER-GYKVVSGG--TDNHLFLVDLVD--------------KNLTGKEADAAL-GRANITVNKNSVPNDPKSP-------- 355 (416)
T ss_dssp HHT-TCEEGGGS--CSSSEEEEECGG--------------GTCCHHHHHHHH-HHTTEECEECCCTTCSSCT--------
T ss_pred HhC-CcccccCC--CCCceeEEEecc--------------cCCCHHHHHHHH-HHcCeEEeCCcCCCCCCCC--------
Confidence 876 89998532 122334443322 246677788877 6689988643322211000
Q ss_pred hHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHh
Q 043646 476 RSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 476 ~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~ 522 (625)
..+..|||..+ .-..++|++++.+.|.+++..
T Consensus 356 ---------------~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 356 ---------------FVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp ---------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------CCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 02567999975 335789999999999988753
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.77 E-value=2.3e-17 Score=168.73 Aligned_cols=341 Identities=16% Similarity=0.161 Sum_probs=218.3
Q ss_pred CcchHHHHHHHHHhhCCCCC--CCCCCcchhhHH-HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 043646 87 GRSLRYIEDYIINNVLPFYG--NTHTSDSYVGQR-MTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGIT 163 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~--n~~~~~~~~~~~-~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (625)
...++.|.+++...+...|+ .|+.- |+.|.. ..++..-+.++.+++||+... +|-.. ||+.+++..+.. +
T Consensus 33 N~~S~~v~~a~~S~l~nkyaeG~pg~r-yy~G~~~id~iE~la~~ra~~lF~a~~a-nVqp~-SGs~An~av~~a-l--- 105 (405)
T d1kl1a_ 33 NFVSRAVMEAQGSVLTNKYAEGYPGRR-YYGGCEYVDIVEELARERAKQLFGAEHA-NVQPH-SGAQANMAVYFT-V--- 105 (405)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHCCSEE-ECCCS-SHHHHHHHHHHH-H---
T ss_pred CcCCHHHHHHhcCcccCcCcCCCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCCcc-eeecc-CchHHHHHHHHH-h---
Confidence 34567888888777755443 44432 333443 445556677889999999755 45554 788887766544 3
Q ss_pred ccchhhhhhhhccCCCCceEEEEcCC---CCchhHHH--HHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhhhCCCCeEE
Q 043646 164 VPSIMRDKLITSLRDEERWVVFLGPY---EHHSNLLS--WRQSLAEVVEIGLDD-NGLLDIEALRSQLELYKAAKRPMLG 237 (625)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~---~h~s~~~~--~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~~~~~~~lv 237 (625)
++|||+ |+..+. .|.+.-.. ......+++.+++++ ++.+|.+++++.+.+ .+|++|
T Consensus 106 ------------l~pGD~--im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~----~kPklI 167 (405)
T d1kl1a_ 106 ------------LEHGDT--VLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL----HRPKLI 167 (405)
T ss_dssp ------------CCTTCE--EEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCCE--EEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHh----hCcceE
Confidence 589996 766553 33332211 222356888889986 678999999999986 489998
Q ss_pred EEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 238 ~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
++..... -...|++++.++|++.|+++++|.||-.|.+.-.+-+-..+.+|++++|.||.|.||.| |+++.+++..+
T Consensus 168 i~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrg-g~I~~~~~~~~ 244 (405)
T d1kl1a_ 168 VAAASAY--PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAK 244 (405)
T ss_dssp EECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHH
T ss_pred Eeccccc--ccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCC-ceEEecchhHH
Confidence 8865443 34578999999999999999999999865543332222224789999999999999997 88888876622
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILP 397 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~ 397 (625)
.+....+ ..-.|.|-...+++.|.++........+...+++..+++.|.+.|.+
T Consensus 245 --~i~~avf------------------------Pg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~ 298 (405)
T d1kl1a_ 245 --QIDKAIF------------------------PGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN 298 (405)
T ss_dssp --HHHHHHT------------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHhhhC------------------------cccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 1100000 01123444444444444443111122445667777788888888877
Q ss_pred CCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhH
Q 043646 398 NQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRS 477 (625)
Q Consensus 398 l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~ 477 (625)
. |+.++..- .....+...+.+ .++++....+.| ++.||.+..-.-+..+-..
T Consensus 299 ~-G~~vv~gg--Td~H~vlvdl~~--------------~~~~g~~ae~~L-e~agI~~Nkn~iP~d~~~~---------- 350 (405)
T d1kl1a_ 299 E-GFTLVSGG--TDNHLLLVDLRP--------------QQLTGKTAEKVL-DEVGITVNKNTIPYDPESP---------- 350 (405)
T ss_dssp T-TCEEGGGS--CSSSEEEEECGG--------------GTCCHHHHHHHH-HHHTEECEECCCTTCSSCT----------
T ss_pred C-CceeecCC--Cccceeeccccc--------------cCCcHHHHHHHH-HHcCeEEcCCcCCCCCCCC----------
Confidence 5 89988542 122334333322 245676666666 6689987632222211000
Q ss_pred HHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHh
Q 043646 478 LEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 478 ~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~ 522 (625)
..+..|||..+ .-..++|+.++.+.|.+++..
T Consensus 351 -------------~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 351 -------------FVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp -------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred -------------CCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 02467999975 445799999999999988754
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.77 E-value=3.5e-17 Score=169.53 Aligned_cols=312 Identities=15% Similarity=0.122 Sum_probs=197.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+.+++.|+++-|... .++|. ||..| +..++..+ +++||. |+++..-|...
T Consensus 57 Y~R~~nPT~~~LE~~la~LEgg~~--a~~~s-SGmaA-i~~~l~~l---------------l~~Gd~--vi~~~~~Yg~t 115 (397)
T d1y4ia1 57 YTRLGNPTTDALEKKLAVLERGEA--GLATA-SGISA-ITTTLLTL---------------CQQGDH--IVSASAIYGCT 115 (397)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCSE--EEEES-SHHHH-HHHHHHHH---------------CCTTCE--EEEESSSCHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhCCcc--ceeeh-HHHHH-HHHHHhhc---------------cCCCCe--eeeeccccccc
Confidence 344444556778999999999853 35664 66555 55555554 589995 88888777766
Q ss_pred HHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+ ...|+++..++.. |++.++++++ ++|++|.+..|.||+..+.|+++|+++||++|++++||.
T Consensus 116 ~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~-----~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDn 185 (397)
T d1y4ia1 116 HAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMR-----PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDN 185 (397)
T ss_dssp HHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred chhhhcccCCCceEeeccCCC-----CHHHHHHhcC-----CCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecC
Confidence 5443 3469999998754 7899999987 689999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+.+.|+..-.++- |+|+++.|..|+++|-.. .|+++++++......+..
T Consensus 186 T~atP~~~~Pl~~----GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~------------------------- 236 (397)
T d1y4ia1 186 TFMSPYCQQPLQL----GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG------------------------- 236 (397)
T ss_dssp TTTCTTTCCGGGG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH-------------------------
T ss_pred cccCcccCcchhc----CCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHH-------------------------
Confidence 9777655433332 899999999999987643 577777766521000000
Q ss_pred hhhhcCCChhHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 349 EERENGGTPQIVQM--IRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 349 ~~~~~~gt~~~~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
.+....+.++.... +..++ .-+..+.++..+.+..+.++|++.|.|+ |+.|.- ...+
T Consensus 237 ~~~~~G~~l~p~~a~l~~rgl-------~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~g 309 (397)
T d1y4ia1 237 LKDITGGCMSPFNAWLTLRGV-------KTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPG 309 (397)
T ss_dssp HHHTTCCCCCHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCC
T ss_pred HHhCcCCcCCHHHHHHHHcCc-------CcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCC
Confidence 01111223322221 11122 2244445566677999999999999884 555421 1147
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
++++|.+..+.. ....+.+.| +.+.+.+.-|..-+ .|..-.+..+..+.-.+ .
T Consensus 310 g~~sf~~~~~~~--------------~~~~f~~~L-~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~---------~ 365 (397)
T d1y4ia1 310 GIISFEIAGGLE--------------AGRRMINSV-ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLK---------A 365 (397)
T ss_dssp SEEEEEETTHHH--------------HHHHHHHTC-SSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHH---------T
T ss_pred eEEEEEecCCHH--------------HHHHHHHcC-CccceeeccCcccceeeCccccccccCCHHHHHH---------c
Confidence 889987753210 012344444 33444444343222 12221222333322222 5
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
|+.++.||||+|. ||++.|++-|++.++
T Consensus 366 Gi~~~liRlsvGl----Ed~~DLi~Dl~~AL~ 393 (397)
T d1y4ia1 366 GITDGLIRLSVGL----EDPEDIINDLEHAIR 393 (397)
T ss_dssp TCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred CCCcCEEEEEecc----CCHHHHHHHHHHHHH
Confidence 6778999999996 444555555554443
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.76 E-value=3.4e-18 Score=180.52 Aligned_cols=339 Identities=12% Similarity=0.093 Sum_probs=200.2
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCC-hHHH---HH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFCGA-GTTA---AI 153 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift~s-Gtta---al 153 (625)
+|.|..+..+.++.|.++..+.+.. +....|....+..++.+++.+++.+..+.. .++.++.+++ +++. ++
T Consensus 37 ~~~d~~~~~~~~~~V~~a~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~ 112 (401)
T d7aata_ 37 AYRDDNGKPYVLNCVRKAEAMIAAK----KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVG 112 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHT----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred CCcCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHH
Confidence 3556666667778898887665532 111113233334555555555555444332 1225555432 2332 44
Q ss_pred HHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhC
Q 043646 154 KRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAA 231 (625)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~ 231 (625)
..++..+ ++|||+ |+++.+.|+.+...++..|++++.+|+.+ ++..+++.+.+.+.. ..
T Consensus 113 ~~~~~~l---------------~~pGd~--Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 173 (401)
T d7aata_ 113 ANFLQRF---------------FKFSRD--VYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK--IP 173 (401)
T ss_dssp HHHHHHH---------------CTTCCE--EEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT--SC
T ss_pred HHhhHhh---------------cCCCce--EEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHhc--CC
Confidence 4445544 689996 99999999999988999999999999854 457888888888762 23
Q ss_pred CCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-ccc--C---CCC-CCCCCcEEEEcCCCCCC
Q 043646 232 KRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-KIN--L---RSR-NIDGYDAIFLATHKFLG 301 (625)
Q Consensus 232 ~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-~id--~---~~~-~~~~~D~v~~S~hK~lg 301 (625)
++++++++++++||||.+.+ +++|+++|++|+++++.|+++..-.. ... . ... ....--+++.++.|.++
T Consensus 174 ~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 253 (401)
T d7aata_ 174 EKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG 253 (401)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce
Confidence 57899999999999999976 57899999999999999999653221 100 0 000 00012355668888887
Q ss_pred CCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHH-HHH--HHHHh-hcC
Q 043646 302 GPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRA-ALA--FWVKE-YIG 376 (625)
Q Consensus 302 gp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~a-al~--~~~~~-~~g 376 (625)
.|+ .+|++++...... ..... .............+.+...+.+.+ .+. .+..+ ...
T Consensus 254 ~~G~RiG~~~~~~~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 314 (401)
T d7aata_ 254 LYGERAGAFTVICRDAE--EAKRV-----------------ESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVE 314 (401)
T ss_dssp CGGGCEEEEEEECSSHH--HHHHH-----------------HHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred eeccccceeecchHHHH--HHHHH-----------------HHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHH
Confidence 664 4899999877621 10000 000000011111223333332211 110 00000 011
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCc---EEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCe
Q 043646 377 YEVIKKQEDVYIESALGRILPNQN---IQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGI 453 (625)
Q Consensus 377 ~~~i~~~~~~l~~~l~~~L~~l~g---v~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI 453 (625)
.+.++++....++.+.+.|+++.. +..+.+ .++.++|.- ++ .++++.|.+++||
T Consensus 315 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~----~~G~F~~~~------------------ls-~e~~~~L~~e~gV 371 (401)
T d7aata_ 315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHITD----QIGMFCFTG------------------LK-PEQVERLTKEFSI 371 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH----CCSSEEECC------------------CC-HHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCcceECC----CCeEEEecC------------------CC-HHHHHHHHHhCCE
Confidence 334555566667777777766421 222223 345555532 12 3556777788999
Q ss_pred eeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 454 QARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 454 ~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
.+.+| +|||+.. .++++|+++.++|.+++
T Consensus 372 ~~~pg-------------------------------------~Ris~a~-~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 372 YMTKD-------------------------------------GRISVAG-VASSNVGYLAHAIHQVT 400 (401)
T ss_dssp ECCTT-------------------------------------CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred EECCC-------------------------------------cEEEecc-CCHHHHHHHHHHHHHHh
Confidence 88643 4999853 46788999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.74 E-value=3.2e-17 Score=165.25 Aligned_cols=319 Identities=12% Similarity=0.028 Sum_probs=178.0
Q ss_pred chHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchh
Q 043646 89 SLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIM 168 (625)
Q Consensus 89 ~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (625)
++|.|++++.+..... . .++...+..+++|+.+++++|++++ +|+||++ +|+++..++..+
T Consensus 12 ~~P~v~eAl~~~~~~~---~------~~y~~~~~~~~lr~~ia~~~g~~~~-~v~~tsg-gtean~~a~~~~-------- 72 (340)
T d1svva_ 12 MHPKILDLMARDNMTQ---H------AGYGQDSHCAKAARLIGELLERPDA-DVHFISG-GTQTNLIACSLA-------- 72 (340)
T ss_dssp CCHHHHHHHHHHTTCC---C------CSTTCSHHHHHHHHHHHHHHTCTTS-EEEEESC-HHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHhhcC---C------CCCCCCHHHHHHHHHHHHHhCCCcc-eEEEcCC-HHHHHHHHHHHH--------
Confidence 3557999998765421 1 1122345678899999999999876 8999954 445455555544
Q ss_pred hhhhhhccCCCCceEEEEcCCCCchhHHHHH--HcCCeEEEEecCCCCCCCHHHHHHHHHHhhh-CCCCeEEEEecccCc
Q 043646 169 RDKLITSLRDEERWVVFLGPYEHHSNLLSWR--QSLAEVVEIGLDDNGLLDIEALRSQLELYKA-AKRPMLGSFSACSNV 245 (625)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~-~~~~~lv~~~~~~n~ 245 (625)
..++++ +++....|.+...... ..+.....+... ....+.+....+...... ...+..++++...|.
T Consensus 73 -------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (340)
T d1svva_ 73 -------LRPWEA--VIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTE 142 (340)
T ss_dssp -------CCTTEE--EEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCT
T ss_pred -------hhhccc--cccccccceeeeecccccccceeeeecccc-cccccchhHHHHhhhhhcccCCcceeeeeccccc
Confidence 356664 7777777766643322 233443333332 233445555444442111 112334444445555
Q ss_pred ccccc---CHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCC----CCCCcEEEEcCCCCCCCCCCceEEEEecccccc
Q 043646 246 TGIYS---DTRSIARLLHQYGGFACFDFAASGPYVKINLRSRN----IDGYDAIFLATHKFLGGPGTPGILLISKALYQL 318 (625)
Q Consensus 246 TG~~~---~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~----~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l 318 (625)
+|.+. ++..+.++|+++|+++++|+++..+....+..... ....+....+..|..+++. +......... .
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~ 219 (340)
T d1svva_ 143 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG--EALIILNDAL-K 219 (340)
T ss_dssp TSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC--EEEEECSGGG-C
T ss_pred ccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccccc--ccccccchhh-h
Confidence 56554 46667899999999999999976544443332220 0023566666666654333 2333322221 0
Q ss_pred CCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC
Q 043646 319 GSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN 398 (625)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l 398 (625)
... . .......++.+....+.+++...+ +..+.....++...++.++.+.|..+
T Consensus 220 ~~~---~----------------------~~~~~~~~~~~~~~~~~aa~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (340)
T d1svva_ 220 PNA---R----------------------HLIKQRGALMAKGWLLGIQFEVLM-KDNLFFELGAHSNKMAAILKAGLEAC 273 (340)
T ss_dssp TTH---H----------------------HHHHHTTCCCTTTHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhh---h----------------------hhcccccCccchhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhHHHHhcC
Confidence 000 0 011122233332222222222221 34455566777888888898888875
Q ss_pred CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHH
Q 043646 399 QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSL 478 (625)
Q Consensus 399 ~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~ 478 (625)
|++++.|. ..+++.+.+ + .+++..|.++ ++....+.. +.
T Consensus 274 -g~~~~~p~---~~~~v~~~~-~-------------------~~~~~~l~~~-~~~~~~~~~---~~------------- 312 (340)
T d1svva_ 274 -GIRLAWPS---ASNQLFPIL-E-------------------NTMIAELNND-FDMYTVEPL---KD------------- 312 (340)
T ss_dssp -TCCBSSCC---SSSEECBEE-E-------------------HHHHHHHTTT-EECEEEEEE---TT-------------
T ss_pred -CCeeecCC---CceEEEEeC-C-------------------HHHHHHHHHh-hhhhccccc---CC-------------
Confidence 88887764 234433322 2 2456666554 332211110 10
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 479 EIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 479 ~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.++.+|+|+++++|++|||+++++|+++
T Consensus 313 -------------~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 313 -------------GTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -------------TEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -------------CCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 2488999999999999999999999864
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.74 E-value=2.2e-16 Score=164.72 Aligned_cols=341 Identities=11% Similarity=-0.014 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHH
Q 043646 121 KMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQ 200 (625)
Q Consensus 121 ~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (625)
...+++++.+++++|.. .+++++|||+| |.+++.+++ +++||+ |++++.+|++...++..
T Consensus 21 ~~~~~fE~~~~~~~~~~---~~~~~~SgT~A-l~lal~~l~--------------~~~gde--Vi~p~~t~~a~~~~~~~ 80 (374)
T d1o69a_ 21 EFVNRFEQSVKDYSKSE---NALALNSATAA-LHLALRVAG--------------VKQDDI--VLASSFTFIASVAPICY 80 (374)
T ss_dssp HHHHHHHHHHHHHHCCS---EEEEESCHHHH-HHHHHHHTT--------------CCTTCE--EEEESSSCGGGTHHHHH
T ss_pred HHHHHHHHHHHHHHCcC---eEEEeCCHHHH-HHHHHHHcC--------------CCCcCE--EEeCCcchHhhHHHHhh
Confidence 34677999999999986 46777566665 667777775 678986 99999999999999999
Q ss_pred cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCcccc
Q 043646 201 SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKIN 280 (625)
Q Consensus 201 ~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id 280 (625)
.|++++.++++++............. ...+++++|++.+. .|...++++|.++|+++|++|+.|+||+.|...-.
T Consensus 81 ~g~~pv~~Di~~~~~~~~~~~~~~~~--~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~ 155 (374)
T d1o69a_ 81 LKAKPVFIDCDETYNIDVDLLKLAIK--ECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKN 155 (374)
T ss_dssp TTCEEEEECBCTTSSBCHHHHHHHHH--HCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETT
T ss_pred ccceeEecccccccccccccccccch--hccccccccccccc---ccchhhhHHHHHHhhccCcchhhhhhhhhcceECC
Confidence 99999999998755444333333222 11257888888765 59999999999999999999999999999875332
Q ss_pred CCCCCCCCCcEEEEcCC--CCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 281 LRSRNIDGYDAIFLATH--KFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~h--K~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
-.-+ . .-|+.++|+| |.+++.+| |+++.+++-. .+.+......+... .... .....|...
T Consensus 156 ~~~G-~-~gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~-~~~~~~~~~~g~~~----------~~~~----~~~~~G~N~ 217 (374)
T d1o69a_ 156 KALG-T-FGEFGVYSYNGNKIITTSGG-GMLIGKNKEK-IEKARFYSTQAREN----------CLHY----EHLDYGYNY 217 (374)
T ss_dssp EETT-S-SSSEEEEECCTTSSSCCSSC-EEEEESCHHH-HHHHHHHTBTCCCS----------SSSC----CCSSCCCBC
T ss_pred eecC-C-CCceEEEeccCccccccccc-eeehhhhHHH-HHhhcccccccccc----------cccc----ccccCCccc
Confidence 2211 1 2377777776 99876555 8888765431 11111111111000 0000 001122211
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCC---cccccc--
Q 043646 359 IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSP---ENMKIE-- 433 (625)
Q Consensus 359 ~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~---~~~~~~-- 433 (625)
-+.-+.|++... +..-.+.+.++.+.+++++.+.|.+...+. ..+........+.+.+........ ......
T Consensus 218 rm~ei~Aaig~~--qL~~l~~~i~~r~~i~~~y~~~L~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (374)
T d1o69a_ 218 RLSNVLGAIGVA--QMEVLEQRVLKKREIYEWYKEFLGEYFSFL-DELENSRSNRWLSTALINFDKNELNACQKDINISQ 294 (374)
T ss_dssp BCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTTEECC-CCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCC
T ss_pred cccchhhhhhHH--HHhhhhhhcchhHHHHHHHHhhcccccccc-ccccCCCCChhheeeeeccccccccccccccccch
Confidence 011112222222 222355666677778889999998753221 111111111111122211100000 000000
Q ss_pred CC--CCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcC---ChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHH
Q 043646 434 RN--KPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAF---DQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEE 508 (625)
Q Consensus 434 ~~--~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~ed 508 (625)
.. ..-....+.+.|.+ .||.++....+-. .-+.+... ..+.+..+ ....+.+.+++.+|++|
T Consensus 295 ~~~~~~~~r~~l~~~L~~-~gI~~r~~y~pl~-~~~~~~~~~~~~~pna~~~-----------~~~~i~LP~~~~lt~~d 361 (374)
T d1o69a_ 295 KNITLHPKISKLIEDLKN-KQIETRPLWKAMH-TQEVFKGAKAYLNGNSELF-----------FQKGICLPSGTAMSKDD 361 (374)
T ss_dssp CCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGG-GCGGGTTCEEEECSHHHHH-----------HHHEEEECCCTTCCHHH
T ss_pred hhccchhhHHHHHHHHHH-CCCCEEEeCcchh-hChhhhcCCCCCCHHHHHH-----------HhCEEECcCCCCCCHHH
Confidence 00 01124578888854 7999987543210 00111110 11222222 13679999999999999
Q ss_pred HHHHHHHHHHHH
Q 043646 509 FEFILAALEFIA 520 (625)
Q Consensus 509 id~ll~aL~~~~ 520 (625)
++++++.|.+++
T Consensus 362 i~~I~~~I~~~l 373 (374)
T d1o69a_ 362 VYEISKLILKSI 373 (374)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=6.3e-16 Score=162.14 Aligned_cols=386 Identities=13% Similarity=0.031 Sum_probs=232.6
Q ss_pred ccCCCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCC-cchHHHHHHHHHhhCCCCCCCCCC-cchhhH
Q 043646 40 KNDHHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASG-RSLRYIEDYIINNVLPFYGNTHTS-DSYVGQ 117 (625)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~-~~p~~v~ea~~~~l~~~~~n~~~~-~~~~~~ 117 (625)
.-+..+|...+..+.+..+++.---. ..++. .++..++.+ ..|+.+ +.+.... . +.+.++. .-..++
T Consensus 36 ~~~~~lp~~~sE~e~~r~~~~ls~kN-~~~~~-------~fig~G~~~~~~p~~i-~~~~~~~-~-~~t~ytPyqpE~sQ 104 (437)
T d1wyua1 36 SPPIDLPEPLPEWKVLEELRRLAAQN-LPAHK-------AFLGGGVRSHHVPPVV-QALAARG-E-FLTAYTPYQPEVSQ 104 (437)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHTS-CCCTT-------CCCCSSCCCCCCCHHH-HHHHTSH-H-HHHCCSCCSGGGCH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhCC-CCcCc-------cccCcccCCceeCHHH-HHHHhCh-h-hhhhCCCcchHHHH
Confidence 33566777666677777777654221 11111 122222223 334444 4443211 1 1111211 112456
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH
Q 043646 118 RMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS 197 (625)
Q Consensus 118 ~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (625)
+..+..-+...+|+++.|.+.. ..-.- .|+++....+..+.. ..... .++++...|++....
T Consensus 105 G~Lq~l~e~q~~l~eltGmd~~-n~s~~-~ga~a~~~~~~~~~~--------------~~~~~--~~~v~~~~~p~~~~v 166 (437)
T d1wyua1 105 GVLQATFEYQTMIAELAGLEIA-NASMY-DGATALAEGVLLALR--------------ETGRM--GVLVSQGVHPEYRAV 166 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEE-CSCBS-SHHHHHHHHHHHHHH--------------HHTCC--EEEEETTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCcc-ccCch-HHHHHHHHHHHHHHh--------------hhccc--ccccccccChHHhhh
Confidence 7888889999999999999743 22232 578876666655442 11223 388888899887654
Q ss_pred H----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc
Q 043646 198 W----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 198 ~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~ 273 (625)
. ...|.+++.++.+..+..+. + +. +++..|++++| |..|.+.++++|++++|+.|+++++|+..-
T Consensus 167 ~~t~a~~~g~~vv~v~~~~~~~~~~-~----~~-----~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~ad~~ 235 (437)
T d1wyua1 167 LRAYLEAVGAKLLTLPLEGGRTPLP-E----VG-----EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPL 235 (437)
T ss_dssp HHHHHHHTTCEEEEECCBTTBCCCC-C----CC-----TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTT
T ss_pred hhhhcccceeeEEeeecccccchhh-h----hc-----cceeEEEEccc-cccccccchHHHHHHhhhccceEEeeechh
Confidence 3 34699999999876443221 1 22 57899999988 557999999999999999999988886522
Q ss_pred CCCccccCCCCCCCCCcEEEEcCCCCCCCCC-----CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 274 GPYVKINLRSRNIDGYDAIFLATHKFLGGPG-----TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 274 ~g~~~id~~~~~~~~~D~v~~S~hK~lggp~-----g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
.-..-....++ |+|+++.+ ||-||.|. +.|++.+++++ .+.+++...| .+++.........+.+....
T Consensus 236 al~~l~~Pg~~---GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l--~r~lPgrivg-~s~d~~G~~~~~l~lqtreq 308 (437)
T d1wyua1 236 SLGVLKPPGAY---GADIAVGD-GQSLGLPMGFGGPHFGFLATKKAF--VRQLPGRLVS-ETVDVEGRRGFILTLQAREQ 308 (437)
T ss_dssp GGGTBCCHHHH---TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGG--GGGCCSCCEE-EEEBTTSCEEEEECCGGGSH
T ss_pred hhhcccccccc---ccceEeec-cceeccccCCCcCccccccccchh--hccccccccc-cccccCCcccceeecccccc
Confidence 11111112223 89999988 55554442 25999999988 4455554443 11111000000011222222
Q ss_pred hhhhcCCChh-----HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCC
Q 043646 349 EERENGGTPQ-----IVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTT 423 (625)
Q Consensus 349 ~~~~~~gt~~-----~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~ 423 (625)
.-|.+.+|.+ .+.+++++.-.......|.+++.++...+++|+.++|.++++++++.+.. ..-.|.+..+
T Consensus 309 hIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~~----~f~ef~v~~~- 383 (437)
T d1wyua1 309 YIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKP----FFNEFALALP- 383 (437)
T ss_dssp HHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSS----BCSEEEEECS-
T ss_pred cccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCCC----eeeEEEEECC-
Confidence 3344444433 33333333333334667899999999999999999999999998875531 1223333221
Q ss_pred CCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCC
Q 043646 424 NSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYY 503 (625)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~ 503 (625)
.+..++++.|.+ +||....-. ...+ .++.+.|++.-.
T Consensus 384 --------------~~~~~i~k~L~d-~G~~~~~~~------~~~~----------------------~~~~lli~~TE~ 420 (437)
T d1wyua1 384 --------------KDPEAVRRALAE-RGFHGATPV------PREY----------------------GENLALFAATEL 420 (437)
T ss_dssp --------------SCHHHHHHHHHH-TTCCCCEEC------CTTS----------------------CSSEEEEECCTT
T ss_pred --------------CCHHHHHHHHHh-CCCCCCccc------ccCC----------------------CCCeEEEecCCC
Confidence 246789999976 788643211 1100 247899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 043646 504 MSNEEFEFILAALEFIA 520 (625)
Q Consensus 504 ~t~edid~ll~aL~~~~ 520 (625)
.|++|+|+|+++|++++
T Consensus 421 ~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 421 HEEEDLLALREALKEVL 437 (437)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999873
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.5e-15 Score=156.81 Aligned_cols=314 Identities=16% Similarity=0.119 Sum_probs=192.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+.+++.|+++-|+.. .++| +||..| +..++.++ +++||. |+++...|...
T Consensus 44 Y~R~~nPt~~~le~~la~LEgg~~--a~~~-sSGMaA-i~~~l~~l---------------~~~gd~--vv~~~~~yg~t 102 (384)
T d1cs1a_ 44 YSRRGNPTRDVVQRALAELEGGAG--AVLT-NTGMSA-IHLVTTVF---------------LKPGDL--LVAPHDCYGGS 102 (384)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHHHH---------------CCTTCE--EEEETTCCHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCc--eEEe-cChHHH-HHHHHhhc---------------ccccce--ecccccccchh
Confidence 333334456778999999999752 3556 466665 55555555 578885 88887777666
Q ss_pred HHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...+. ..|.++.++... |.+.+++++. ++|++|.+..|+||+..+.|+++|+++||++|++++||.
T Consensus 103 ~~~~~~~~~~~g~~~~~~d~~-----d~~~~~~~~~-----~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDN 172 (384)
T d1cs1a_ 103 YRLFDSLAKRGCYRVLFVDQG-----DEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDN 172 (384)
T ss_dssp HHHHHHHHTTTSCEEEEECTT-----CHHHHHHHHH-----TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhhhhcccccccccccCC-----CHHHHHhhcc-----ccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEec
Confidence 54433 247777777643 7889999988 689999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+.+.|+..-.+. + |+|+++.|..|+++|-.. .|+++.++... ...+..
T Consensus 173 T~atP~~~~Pl~-~---GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~-~~~~~~------------------------- 222 (384)
T d1cs1a_ 173 TFLSPALQNPLA-L---GADLVLHSCTKYLNGHSDVVAGVVIAKDPDV-VTELAW------------------------- 222 (384)
T ss_dssp TTTCTTTCCGGG-G---TCSEEEEETTTTTTCSSCCCCEEEEESSHHH-HHHHHH-------------------------
T ss_pred cccCcccccccc-c---CCCEEEEccccccccCCCcccccccCCchhh-hhhhhh-------------------------
Confidence 977665433332 1 899999999999987653 46666655431 000000
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcce
Q 043646 349 EERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAI 414 (625)
Q Consensus 349 ~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i 414 (625)
..+...++.+..... + ++....-.....++..+++..+.++|...|.|+ |+.|.- ...++.
T Consensus 223 ~~~~~G~~~~p~~a~---l--l~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~ 297 (384)
T d1cs1a_ 223 WANNIGVTGGAFDSY---L--LLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAM 297 (384)
T ss_dssp HHHHHTCBCCHHHHH---H--HHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred hhhhhhhccccccHH---H--HhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcce
Confidence 011112222222110 0 011122344455666777999999999999884 544421 113678
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
++|.+..+.. ....+.+.| +.+.+.+.-|...+- |....+..+.++...+ .|+
T Consensus 298 ~sf~l~~~~~--------------~a~~f~~~L-~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~---------~Gi 353 (384)
T d1cs1a_ 298 LSFELDGDEQ--------------TLRRFLGGL-SLFTLAESLGGVESLISHAATMTHAGMAPEARAA---------AGI 353 (384)
T ss_dssp EEEEESSCHH--------------HHHHHHHTC-SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHH---------HTC
T ss_pred eEEeecchHH--------------HHHHHHHhC-CcceeccccCCccceeccccccccccCCHHHHHh---------cCC
Confidence 8887754210 022344444 334444444443321 2222222333322221 467
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 492 KPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 492 ~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++.||||+|. ||++.|++-|++.++.
T Consensus 354 ~~~lvRlSvGl----Ed~eDLi~Dl~~AL~a 380 (384)
T d1cs1a_ 354 SETLLRISTGI----EDGEDLIADLENGFRA 380 (384)
T ss_dssp CTTEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred CcCeEEEEecc----CCHHHHHHHHHHHHHH
Confidence 78999999996 5555555555555443
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.73 E-value=3.8e-15 Score=154.26 Aligned_cols=314 Identities=15% Similarity=0.117 Sum_probs=191.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
+.+++........++++|+++-|+.. .++| +||..| +..++.++ +++||. |+++..-|.
T Consensus 59 ~~Y~R~~nPt~~~LE~~la~LEgg~~--a~~~-sSGMaA-i~~~l~~l---------------~~~Gd~--iv~~~~~Yg 117 (398)
T d1qgna_ 59 FEYGRYGNPTTVVLEEKISALEGAES--TLLM-ASGMCA-STVMLLAL---------------VPAGGH--IVTTTDCYR 117 (398)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCSE--EEEE-SCHHHH-HHHHHHHH---------------SCSSCE--EEEETTSCH
T ss_pred ceecCCCChHHHHHHHHHHHHhCCce--EEEe-cCcchH-HHHHHhhc---------------cccccc--ccccccccc
Confidence 44555555667789999999999752 4555 477665 55555555 578885 788777776
Q ss_pred hhHHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEE
Q 043646 193 SNLLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268 (625)
Q Consensus 193 s~~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~viv 268 (625)
....-+. ..|.++..++.. +.+..++.+.. +++++|.+..+.||+..+.|+++|+++||++|++++|
T Consensus 118 ~t~~l~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~----~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vV 188 (398)
T d1qgna_ 118 KTRIFIETILPKMGITATVIDPA-----DVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCI 188 (398)
T ss_dssp HHHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred hhhhhhccccccccccccccccc-----chhhhhhhhcc----ccceEEEccCccccccccchHHHHHHHHhhcCCEEEe
Confidence 6654443 358888888743 45555544432 6899999999999999999999999999999999999
Q ss_pred eccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 269 DFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 269 D~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
|.+.+.|+..-.+. + |+|+++.|..|+++|-.. .|++..++.... .+.
T Consensus 189 DnT~atP~~~~Pl~-~---GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~--~~~------------------------ 238 (398)
T d1qgna_ 189 DGTFATPLNQKALA-L---GADLVLHSATKFLGGHNDVLAGCISGPLKLVS--EIR------------------------ 238 (398)
T ss_dssp ECTTTCTTTCCTTT-T---TCSEEEECTTTTTTCSSSCCCEEEEECHHHHH--HHH------------------------
T ss_pred cceeeccccCCchh-h---CCCEEEEechhhcCcccceeehhhcchhhhhh--hhh------------------------
Confidence 99977655322222 1 899999999999988754 355555554421 110
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
. ..+...++.+..... +++........+.++..+++..+.++|.+.|.|+ |+.|.- ...+
T Consensus 239 ~-~~~~~G~~l~p~~a~-----ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g 312 (398)
T d1qgna_ 239 N-LHHILGGALNPNAAY-----LIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFG 312 (398)
T ss_dssp H-HHHHHCCCCCHHHHH-----HHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCC
T ss_pred h-hcccCCCcCCHHHHH-----HHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCC
Confidence 0 011112222222111 0011122344455666677899999999999885 555421 1236
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHHhCCC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQKGYL 489 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~g~~ 489 (625)
+.++|.+..+. -....+++.| +.+.+.+.-|...+ .|....+..++.+... -.
T Consensus 313 ~~~sf~~~g~~--------------~~a~~f~~~L-~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~---------~~ 368 (398)
T d1qgna_ 313 GAVSFEVDGDL--------------LTTAKFVDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRA---------KY 368 (398)
T ss_dssp SEEEEEESSCH--------------HHHHHHHHHC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHH---------TT
T ss_pred ceeeeeecCCH--------------HHHHHHHHcC-CcceeeeCCCCCcceeeCcchhccccCCHHHHH---------hc
Confidence 78888764321 0122344544 33344444344332 1333323334332222 24
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 043646 490 GVKPGWTRITFPYYMSNEEFEFILAALEFIA 520 (625)
Q Consensus 490 g~~~g~iRis~~~~~t~edid~ll~aL~~~~ 520 (625)
|+.++.||||+|. ||++.|++-|++.+
T Consensus 369 Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL 395 (398)
T d1qgna_ 369 GIMDNLVRFSFGV----EDFDDLKADILQAL 395 (398)
T ss_dssp TCCSSEEEEECCS----SCHHHHHHHHHHHH
T ss_pred CCCcCEEEEEecc----CCHHHHHHHHHHHH
Confidence 6788999999996 44555555555444
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.73 E-value=2.1e-16 Score=163.27 Aligned_cols=312 Identities=13% Similarity=0.147 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+.++++|+.+-|+.. .++| +||..| +..++. + +++||. |+++...|...
T Consensus 43 Y~R~~nPt~~~le~~la~LE~~~~--a~~f-sSGMaA-isall~-l---------------l~~Gd~--vv~~~~~Yg~t 100 (380)
T d1ibja_ 43 YTRSGNPTRDALESLLAKLDKADR--AFCF-TSGMAA-LSAVTH-L---------------IKNGEE--IVAGDDVYGGS 100 (380)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHT-T---------------SCTTCE--EEEESSCCHHH
T ss_pred eeCCCChHHHHHHHHHHHHcCCce--EEeh-hhHHHH-HHHHHH-h---------------hCCCCE--EEEEecccccc
Confidence 333334446778999999999752 4666 478654 765533 2 578885 88888888887
Q ss_pred HHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEec
Q 043646 195 LLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (625)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~ 270 (625)
...++. .|.++..+... +++.++++++ ++|++|.+..++||+..+.|+++|+++||++|++++||.
T Consensus 101 ~~l~~~~~~~~gi~~~~~d~~-----~~~~~~~ai~-----~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDn 170 (380)
T d1ibja_ 101 DRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDN 170 (380)
T ss_dssp HHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEEC
T ss_pred cchhhhhhccccccccccCcc-----hHHHHHHHhc-----cCccEEEeccccccccccccHHHHHHHHHHcCCeEEeec
Confidence 666543 58888888754 7889998887 689999999999999999999999999999999999999
Q ss_pred cCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccch
Q 043646 271 AASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDI 348 (625)
Q Consensus 271 A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (625)
+.+.|+..-.++ + |+|+++.|..|+++|-.. .|+++++++... ..+..
T Consensus 171 T~atP~~~~Pl~-~---GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~-~~~~~------------------------- 220 (380)
T d1ibja_ 171 SIMSPVLSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVYF------------------------- 220 (380)
T ss_dssp TTTCTTTCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECSHHHH-HHHHH-------------------------
T ss_pred cccccccccccc-c---CCCEEEecccceeccccCccccccccchhhHH-HHHHh-------------------------
Confidence 977665433332 1 899999999999987643 477777655310 00000
Q ss_pred hhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCcce
Q 043646 349 EERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQAI 414 (625)
Q Consensus 349 ~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~~i 414 (625)
..+...++++..... ++.......+.+.++..+++..+.++|.+.|.|+ |+.|.- ...++.
T Consensus 221 ~~~~~G~~l~p~~a~-----ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~ 295 (380)
T d1ibja_ 221 LQNSEGSGLAPFDCW-----LCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV 295 (380)
T ss_dssp HHHHTTCBCCHHHHH-----HHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE
T ss_pred hccccCCcCCHHHHH-----HHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccccccccccccccc
Confidence 111112222222211 0111222344555666677889999999888774 544320 123455
Q ss_pred EEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhCCCCC
Q 043646 415 LSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKGYLGV 491 (625)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~g~ 491 (625)
++|...... ....+.+.| +.+.+.+.-|...+- |..-.+..+..+.. ...|+
T Consensus 296 ~s~~~~~~~---------------~a~~f~d~l-~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r---------~~~Gi 350 (380)
T d1ibja_ 296 FSFITGSVA---------------LSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVR---------EARGL 350 (380)
T ss_dssp EEEECSCHH---------------HHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSSS---------SSSSC
T ss_pred ccccccHHH---------------HHHHHHHhC-CcCeEeeccCCccccccCchhhhhhcCCHHHH---------HHcCC
Confidence 666432110 123344444 334444444433221 21111112221111 12577
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 492 KPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 492 ~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
.++.||||+|. ||.|.+++-|++.++.
T Consensus 351 ~~~lvRlSvGl----E~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 351 TEDLVRISAGI----EDVDDLISDLDIAFKT 377 (380)
T ss_dssp CTTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred CcCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence 88999999996 5666666666665544
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=8.5e-17 Score=163.88 Aligned_cols=321 Identities=11% Similarity=0.008 Sum_probs=181.1
Q ss_pred cchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccch
Q 043646 88 RSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSI 167 (625)
Q Consensus 88 ~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (625)
.+.+.|++|+.+.. .+...|.. .....++++++++++|.+ +++|++||+.+++.. +.++
T Consensus 11 ~p~p~v~~A~~~a~------~g~~~yg~----~p~~~~le~~lA~~~G~~---~~~~~~sGt~A~~~a-l~a~------- 69 (343)
T d1m6sa_ 11 KPTEEMRKAMAQAE------VGDDVYGE----DPTINELERLAAETFGKE---AALFVPSGTMGNQVS-IMAH------- 69 (343)
T ss_dssp CCCHHHHHHHHTCC------CCCGGGTC----CHHHHHHHHHHHHHTTCS---EEEEESCHHHHHHHH-HHHH-------
T ss_pred CCCHHHHHHHHhhh------cCCcccCC----CHHHHHHHHHHHHHHCCC---eEEEeCCHHHHHHHH-HHHH-------
Confidence 34567999986532 22111211 234678899999999975 467776777775544 4444
Q ss_pred hhhhhhhccCCCCceEEEEcCCCCchhHHH---HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhh-hCCCCe-EEEEecc
Q 043646 168 MRDKLITSLRDEERWVVFLGPYEHHSNLLS---WRQSLAEVVEIGLDDNGLLDIEALRSQLELYK-AAKRPM-LGSFSAC 242 (625)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~-~~~~~~-lv~~~~~ 242 (625)
..+|+. +++.+..|.+.... +...+..++.++.+ .+..|++.+++.+.... ...++. ++....+
T Consensus 70 --------~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 138 (343)
T d1m6sa_ 70 --------TQRGDE--VILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH 138 (343)
T ss_dssp --------CCTTCE--EEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSB
T ss_pred --------hccCCc--eeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhhhccccccccccccccc
Confidence 356775 77777777665432 23334455555433 45679999999887421 122445 4444555
Q ss_pred cCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCccccCCCC--CCCCCcEEEEcCCCCCCCCCCceEEEEeccccc
Q 043646 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKINLRSR--NIDGYDAIFLATHKFLGGPGTPGILLISKALYQ 317 (625)
Q Consensus 243 ~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~ 317 (625)
+++.|.+.| +++|+++|+++|+++++|+++..+......... .....+..+++.+|..++..+ |+.+...+...
T Consensus 139 ~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~ 217 (343)
T d1m6sa_ 139 NRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVG-SVVVGDRDFIE 217 (343)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSC-EEEEECHHHHH
T ss_pred ccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccccccccccccccccccc-ccccccHHHHh
Confidence 666676655 567888889999999999997753322111110 011346667777777765654 56665555411
Q ss_pred cCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhC
Q 043646 318 LGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMI-RAALAFWVKEYIGYEVIKKQEDVYIESALGRIL 396 (625)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~ 396 (625)
.... ......++....... .+............... .....++.+.+.
T Consensus 218 --~~~~-------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 266 (343)
T d1m6sa_ 218 --RARK-------------------------ARKMLGGGMRQAGVLAAAGIIALTKMVDRLKED----HENARFLALKLK 266 (343)
T ss_dssp --HHHH-------------------------HHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHH----HHHHHHHHHHHH
T ss_pred --hhHh-------------------------hCcccccccchhHHHHHhhhhhhhhhHHHHHHH----HHHHHHhhhHHH
Confidence 0000 011111222111211 11112211111222222 223334444444
Q ss_pred CCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhh
Q 043646 397 PNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTR 476 (625)
Q Consensus 397 ~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~ 476 (625)
.+.+.....+. ...++.+.+ ++ ..+...++.+.|.+ +||.+++.
T Consensus 267 ~~~~~~~~~~~---~~~~v~~~~-~~-------------~~~~a~~l~~~L~~-~Gi~v~~~------------------ 310 (343)
T d1m6sa_ 267 EIGYSVNPEDV---KTNMVILRT-DN-------------LKVNAHGFIEALRN-SGVLANAV------------------ 310 (343)
T ss_dssp HHTCBCCGGGC---CSSEEEEEC-TT-------------SSSCHHHHHHHHHH-HTEECEEE------------------
T ss_pred HhccCccCCCC---CceEEEEEe-CC-------------CcccHHHHHHHHHH-CCCEEecC------------------
Confidence 44344333332 223343333 22 13456789999965 69998742
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Q 043646 477 SLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 477 ~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~ 523 (625)
.++++||++++.+|+||||+++++|++++++.
T Consensus 311 ---------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 311 ---------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ---------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 14789999999999999999999999998873
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=7e-17 Score=169.97 Aligned_cols=216 Identities=19% Similarity=0.136 Sum_probs=139.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~~vift~sGttaal~~l 156 (625)
+|.|..+..+.++.|.+++.+.... +.+..|....+..++.+.+.+++.+..+.. ++..+...+.|++.++...
T Consensus 35 ~~~d~~g~~p~~~~V~~A~~~~~~~----~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (396)
T d2q7wa1 35 VYKDETGKTPVLTSVKKAEQYLLEN----ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVA 110 (396)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHH----CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHH
T ss_pred CccCCCCCCCCCHHHHHHHHHHhhC----CCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHH
Confidence 4667667778888999987765532 111123333344555555555555444432 2222322224555444444
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
...+. .+.+||. |+++.+.|+.+...++..|++++.++... ++..+...+.+.+.+ ..+++
T Consensus 111 ~~~l~-------------~~~~gd~--Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 173 (396)
T d2q7wa1 111 ADFLA-------------KNTSVKR--VWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNE--AQAGD 173 (396)
T ss_dssp HHHHH-------------HHSCCCE--EEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT--CCTTC
T ss_pred HHHHh-------------hcccceE--EEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHH--hccCc
Confidence 33331 1468885 99999999999988999999999999764 345677777766652 23578
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcccc-----CCCC-CCCCCcEEEEcCCCCCCCCC-
Q 043646 235 MLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKIN-----LRSR-NIDGYDAIFLATHKFLGGPG- 304 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id-----~~~~-~~~~~D~v~~S~hK~lggp~- 304 (625)
+++++++|+||||.+.+ +++|+++|++|++++++|+++..-...-+ .... ......+++.|+.|.++.|+
T Consensus 174 ~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~ 253 (396)
T d2q7wa1 174 VVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNE 253 (396)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG
T ss_pred EEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCC
Confidence 89999999999999977 56789999999999999999663221100 0000 00123466678889887665
Q ss_pred CceEEEEeccc
Q 043646 305 TPGILLISKAL 315 (625)
Q Consensus 305 g~G~l~v~~~~ 315 (625)
.+|++++....
T Consensus 254 R~G~~~~~~~~ 264 (396)
T d2q7wa1 254 RVGACTLVAAD 264 (396)
T ss_dssp CCEEEEEECSS
T ss_pred CccccccchhH
Confidence 38999998765
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.70 E-value=1.6e-15 Score=158.12 Aligned_cols=354 Identities=13% Similarity=0.133 Sum_probs=219.0
Q ss_pred CcchHHHHHHHHHhhCCCC--CCCCCCcchhhHH-HHHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHh
Q 043646 87 GRSLRYIEDYIINNVLPFY--GNTHTSDSYVGQR-MTKMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~--~n~~~~~~~~~~~-~~~~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l 160 (625)
...++.|.+++...+...| +.|+.- |+.|.. ..++...+.++.+++||+++.. +|-.. ||+.+++......
T Consensus 41 N~~S~~v~~algS~l~nkYaeG~pg~R-yy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~-SGs~An~av~~al- 117 (470)
T d1rv3a_ 41 NFASRAVLEALGSCLNNKYSLGYPGQR-YYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SGSPANFAVYTAL- 117 (470)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHH-
T ss_pred CcCCHHHHHHhcchhcccccCCCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCChhhcccccccc-CCccHHHHHHHHh-
Confidence 4567789999877775544 334432 333443 4455566778889999997542 22232 7888877665543
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCC---CchhHH-------HHHHcCCeEEEEecCC-CCCCCHHHHHHHHHHhh
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYE---HHSNLL-------SWRQSLAEVVEIGLDD-NGLLDIEALRSQLELYK 229 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~---h~s~~~-------~~~~~G~~vv~v~~~~-~~~ld~~~L~~~l~~~~ 229 (625)
++|||+ |+..+.. |.+.-. .......+.+.+++++ ++.+|.+++++...+
T Consensus 118 ---------------l~pgD~--im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~-- 178 (470)
T d1rv3a_ 118 ---------------VEPHGR--IMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL-- 178 (470)
T ss_dssp ---------------TCTTCE--EEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH--
T ss_pred ---------------cCCCCe--EeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHh--
Confidence 589997 6664433 322210 1112235788889886 589999999999886
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
.+|++|++....+ -...|.+++.++|++.|+++++|.||-.|.+.-.+-.-..+.+|++++|.||.|.||.| |++
T Consensus 179 --~kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGPrg-GiI 253 (470)
T d1rv3a_ 179 --FHPKLIIAGTSCY--SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMI 253 (470)
T ss_dssp --HCCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEE
T ss_pred --hCcceEeechhhc--cccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCCcc-eEE
Confidence 4899988865443 34579999999999999999999999765432222111112679999999999999997 999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh---cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE---NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~---~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.+++.. ...|.. |-. ....+...+.... -.|.|....+++.|.++............+++..
T Consensus 254 ~~~~~~~---~~~~~~-~~~----------~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~ 319 (470)
T d1rv3a_ 254 FYRRGVR---SVDPKT-GKE----------ILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVA 319 (470)
T ss_dssp EEECSBC---C--------C----------CBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred EEccccc---cccccc-cch----------hHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9887751 111110 000 0001111111111 1244555555444444431111124456677777
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++.|.+.|.+. |++++... .....+...+.+ .++++..+.+.| ++.||.+..-+.++.+
T Consensus 320 NAk~La~~L~~~-G~~v~~gg--TdnHlvlvdl~~--------------~g~~g~~ae~~L-e~~gI~~Nkn~iP~D~-- 379 (470)
T d1rv3a_ 320 NCRALSAALVEL-GYKIVTGG--SDNHLILVDLRS--------------KGTDGGRAEKVL-EACSIACNKNTCPGDK-- 379 (470)
T ss_dssp HHHHHHHHHHHT-TCEEGGGS--CSSSEEEEEGGG--------------GTCCHHHHHHHH-HHTTEECEEECCSSCS--
T ss_pred HHHHHHHHHHhC-CceeccCC--CCCceEEEeecc--------------cCCcHHHHHHHH-HHcCcEECCCcCCCCC--
Confidence 888888888775 88887542 122333333322 356777777777 6689988643322211
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~~ 523 (625)
. ...+..|||..+ .-..++|+.++.+.|.+++...
T Consensus 380 -~---------------------~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~ 418 (470)
T d1rv3a_ 380 -S---------------------ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELT 418 (470)
T ss_dssp -C---------------------TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -C---------------------CCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 013577999975 4468999999999999887654
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.70 E-value=2e-16 Score=167.36 Aligned_cols=217 Identities=13% Similarity=0.083 Sum_probs=138.0
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEe-CChHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-QADAIIFC-GAGTTAAIKRL 156 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-~~~~vift-~sGttaal~~l 156 (625)
+|.|..+..+.++.|.++....... ......|....+..++.+++.+++.+..+.. .++.++.+ ++|+..++..+
T Consensus 38 ~~~d~~g~~~~~~~V~~A~~~l~~~---~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (412)
T d1yaaa_ 38 AYRDDNGKPWVLPSVKAAEKLIHND---SSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHIS 114 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTC---TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred CCcCCCCCCCCcHHHHHHHHHHHhC---cccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHH
Confidence 4666666667778888875433211 1111113333334555555555544433321 12233332 23444444444
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRP 234 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~ 234 (625)
+..+. .+.|||. |+++.+.|+.+...++..|++++.++... +..++.+.+.+.+.. ..+++
T Consensus 115 ~~~~~-------------~~~~gd~--Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 177 (412)
T d1yaaa_ 115 AKFFS-------------KFFPDKL--VYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQK--APEGS 177 (412)
T ss_dssp HHHHH-------------HHCTTCC--EEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHH--SCTTC
T ss_pred HHHHh-------------ccCCCCE--EecccccCchhHHHHHHcCCceecccccccccccccchhhhccccc--CCCce
Confidence 33221 1468886 99999999999888888999999999753 456788888888773 22467
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-ccc--------C-CCCCCCCCcEEEEcCCCCCC
Q 043646 235 MLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-KIN--------L-RSRNIDGYDAIFLATHKFLG 301 (625)
Q Consensus 235 ~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-~id--------~-~~~~~~~~D~v~~S~hK~lg 301 (625)
+++++++|+||||.+.+ +++|+++|++++++++.|+++..-.. ... . ........-+++.|++|.++
T Consensus 178 ~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 257 (412)
T d1yaaa_ 178 IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257 (412)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC
T ss_pred EEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccc
Confidence 89999999999999976 67899999999999999999653211 100 0 00000122367779999998
Q ss_pred CCC-CceEEEEeccc
Q 043646 302 GPG-TPGILLISKAL 315 (625)
Q Consensus 302 gp~-g~G~l~v~~~~ 315 (625)
.|+ .+|+++++.+.
T Consensus 258 ~~G~RiG~~~~~~~~ 272 (412)
T d1yaaa_ 258 MYGERVGCFHLALTK 272 (412)
T ss_dssp CGGGCEEEEEEECCS
T ss_pred cCcCceEEEEEchhh
Confidence 664 49999999876
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.70 E-value=4.7e-16 Score=161.56 Aligned_cols=354 Identities=15% Similarity=0.147 Sum_probs=204.8
Q ss_pred CcchHHHHHHHHHhhCCCCC--CCCCCcchhhHHH-HHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHh
Q 043646 87 GRSLRYIEDYIINNVLPFYG--NTHTSDSYVGQRM-TKMVHEASNYIKRCLGGGQAD---AIIFCGAGTTAAIKRLQEVM 160 (625)
Q Consensus 87 ~~~p~~v~ea~~~~l~~~~~--n~~~~~~~~~~~~-~~~~~~~~~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l 160 (625)
...++.|.+++...+...|+ .|+.- |+.|... .++..-++++.+++||++... +|-.. ||+.+++......
T Consensus 37 N~~S~~v~~algS~l~nkYaeG~pg~R-yy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~-SGs~An~av~~al- 113 (463)
T d2a7va1 37 NFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTAL- 113 (463)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHH-
T ss_pred CcCCHHHHHHhcchhcccccCCCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcccc-ccHHHHHHHHHHH-
Confidence 45677899988777755443 34432 3334333 345556788899999998752 23343 7888876665443
Q ss_pred cccccchhhhhhhhccCCCCceEEEEcCCCCchhH--------HHHHHcCC--eEEEEecCC-CCCCCHHHHHHHHHHhh
Q 043646 161 GITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNL--------LSWRQSLA--EVVEIGLDD-NGLLDIEALRSQLELYK 229 (625)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--------~~~~~~G~--~vv~v~~~~-~~~ld~~~L~~~l~~~~ 229 (625)
++|||+ |+..+..|...+ ......|. ++..+++++ ++.+|.+++++...+
T Consensus 114 ---------------l~pgD~--Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~-- 174 (463)
T d2a7va1 114 ---------------LQPHDR--IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL-- 174 (463)
T ss_dssp ---------------CCSCEE--CCC-------------------------------CCBCTTTCSBCHHHHHHHHHH--
T ss_pred ---------------cCCCce--EEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhh--
Confidence 589996 665544433322 11111232 455556664 688999999999886
Q ss_pred hCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCCceEE
Q 043646 230 AAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGTPGIL 309 (625)
Q Consensus 230 ~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~l 309 (625)
.+|++|++..... -...|.+++.++|++.|+++++|.+|-.|.+.-.+-+-....+|++++|.||.|.||.| |++
T Consensus 175 --~kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGPrg-GiI 249 (463)
T d2a7va1 175 --FRPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLI 249 (463)
T ss_dssp --HCCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEE
T ss_pred --cCCceEEeccccc--ccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCCCc-eEE
Confidence 4899998865443 34579999999999999999999998755442222111113679999999999999997 999
Q ss_pred EEeccccccCCCCCcccCCceEEeeccccccccccccchhhhh---cCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 043646 310 LISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERE---NGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDV 386 (625)
Q Consensus 310 ~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~---~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (625)
+.+++... ..|. ++.. ....+...+.... -.|.|....+++.|.++........+...+++..
T Consensus 250 l~~~~~~~---~~~~---~~~~--------~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~ 315 (463)
T d2a7va1 250 FYRKGVKA---VDPK---TGRE--------IPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLK 315 (463)
T ss_dssp EEECSEEE---EETT---TEEE--------EECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEcccccc---cccc---cCcc--------chhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 98876411 0000 0000 0001111111111 1244545554444444431112224456677777
Q ss_pred HHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhh
Q 043646 387 YIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYG 466 (625)
Q Consensus 387 l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~ 466 (625)
+++.|.+.|.+. |++++..- .....+.+.+. ..++++..+.+.| ++.||.+.--..+..+
T Consensus 316 NAk~La~~L~~~-G~~vv~gg--TdnHlvlvdl~--------------~~~~~G~~ae~~L-e~~gI~~Nkn~iP~D~-- 375 (463)
T d2a7va1 316 NARAMADALLER-GYSLVSGG--TDNHLVLVDLR--------------PKGLDGARAERVL-ELVSITANKNTCPGDR-- 375 (463)
T ss_dssp HHHHHHHHHHHT-TCEEGGGS--CSSSEEEEECT--------------TTTCCHHHHHHHH-HHTTEECEEECCTTCC--
T ss_pred HHHHHHHHHHhC-CCeeecCC--CCCceeeeecc--------------ccCCCHHHHHHHH-HhccCccCCccCCCCC--
Confidence 888888888776 88888542 12233333332 2356677777777 6689988643322211
Q ss_pred HhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhh
Q 043646 467 HTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFP----YYMSNEEFEFILAALEFIAAYG 523 (625)
Q Consensus 467 ~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~----~~~t~edid~ll~aL~~~~~~~ 523 (625)
....+..|||..+ .-..++|+.++.+.|.+++..+
T Consensus 376 ----------------------~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~~ 414 (463)
T d2a7va1 376 ----------------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 414 (463)
T ss_dssp ----------------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 0012567999975 3357899999999999987654
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.69 E-value=3.4e-16 Score=165.52 Aligned_cols=221 Identities=14% Similarity=0.010 Sum_probs=137.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC--CCC-cEEEeCChHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG--QAD-AIIFCGAGTTAAIKR 155 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~--~~~-~vift~sGttaal~~ 155 (625)
+|.|-.+..+.++.|.++..........+ | .|....+..++.+++.+++.+..+.+ .+. .++.| .|.+.++..
T Consensus 39 ~~~d~~g~~~~~~~V~~a~~~~~~~~~~~-~--~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 114 (412)
T d1ajsa_ 39 AYRTDDCQPWVLPVVRKVEQRIANNSSLN-H--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQS-LGGTGALRI 114 (412)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHTCTTCC-C--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-EHHHHHHHH
T ss_pred CCcCCCCCCCCcHHHHHHHHHHHhCCCcC-C--CCCCCCCCHHHHHHHHHHHhccCCcccccccceeecc-cchhhHHHH
Confidence 47777777777788888865543221111 1 23333344555555555554433321 222 23444 455444444
Q ss_pred HHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEe-cC-C-CCCCCHHHHHHHHHHhhhCC
Q 043646 156 LQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIG-LD-D-NGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~-~~-~-~~~ld~~~L~~~l~~~~~~~ 232 (625)
...++... +...++|||+ |+++.+.|+.+...++..|++++.++ .. . ....|.+.+++.+.. ..+
T Consensus 115 ~~~~l~~~--------~~~~~~pGd~--Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~~ 182 (412)
T d1ajsa_ 115 GAEFLARW--------YNGTNNKDTP--VYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN--APE 182 (412)
T ss_dssp HHHHHHHH--------SSSSSCCCSC--EEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH--SCT
T ss_pred HHHHHHHH--------hhhcCCCCCE--EEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHHHh--ccC
Confidence 43333110 0012589997 99999999999888999998765544 32 2 346788888777653 235
Q ss_pred CCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCc-ccc-----C-CCCCCCCCcEEEEcCCCCCCC
Q 043646 233 RPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-KIN-----L-RSRNIDGYDAIFLATHKFLGG 302 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~-~id-----~-~~~~~~~~D~v~~S~hK~lgg 302 (625)
+++++++++|+||||.+.+ +++|+++|++||++++.|+++..-.. ..+ . .........+++.++.|.++.
T Consensus 183 ~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~ 262 (412)
T d1ajsa_ 183 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGL 262 (412)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCC
T ss_pred CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccC
Confidence 7899999999999999977 67899999999999999999753221 100 0 000011335667788888876
Q ss_pred CC-CceEEEEeccc
Q 043646 303 PG-TPGILLISKAL 315 (625)
Q Consensus 303 p~-g~G~l~v~~~~ 315 (625)
|+ .+|++++....
T Consensus 263 ~G~R~G~~~~~~~~ 276 (412)
T d1ajsa_ 263 YNERVGNLTVVAKE 276 (412)
T ss_dssp GGGCEEEEEEECSS
T ss_pred CCCCccccccchhH
Confidence 65 48999988665
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.69 E-value=3.7e-16 Score=166.93 Aligned_cols=323 Identities=13% Similarity=0.100 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
.+.++++.+++++|.+ .++++.||+.|+ ..++.++ +++||. |+.... +.+....+...
T Consensus 76 t~~~lE~~~a~l~G~e---~al~~~SGt~An-~~a~~~l---------------~~~Gd~--Vi~~~~-f~~~~~~i~~~ 133 (456)
T d1c7ga_ 76 NFYHLEKTVKELFGFK---HIVPTHQGRGAE-NLLSQLA---------------IKPGQY--VAGNMY-FTTTRFHQEKN 133 (456)
T ss_dssp HHHHHHHHHHHHHCCS---EEEEESSHHHHH-HHHHHHH---------------CCTTEE--EEESSC-CHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCC---eEEECCCHHHHH-HHHHHHh---------------cCCCCe--EecCcc-hHHHHHHHHHc
Confidence 4567889999999986 568887888775 4444555 478884 665544 33443456667
Q ss_pred CCeEEEEecC----------CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccc-cc---cCHHHHHHHHHHcCCEEE
Q 043646 202 LAEVVEIGLD----------DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTG-IY---SDTRSIARLLHQYGGFAC 267 (625)
Q Consensus 202 G~~vv~v~~~----------~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG-~~---~~l~~I~~la~~~g~~vi 267 (625)
|+..+.+..+ ..+.+|+++|+++|++.. ...+.++++..++|..| .. .++++|.++|++||+.+|
T Consensus 134 g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~-~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~ 212 (456)
T d1c7ga_ 134 GATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKG-AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIF 212 (456)
T ss_dssp TEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred CceeeeccccccccccccCCccccCCHHHHHHHhhhcC-CccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEE
Confidence 8887765432 246899999999998531 13467999999999876 44 357889999999999999
Q ss_pred EeccCcCCCc-----------cccCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCc--ccCCceE
Q 043646 268 FDFAASGPYV-----------KINLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPS--TCGGGTV 331 (625)
Q Consensus 268 vD~A~~~g~~-----------~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~--~~ggg~v 331 (625)
+|+|+..+.. ..++.+. ....+|++++|.||.+++|.| |+++.+++.. ....+.. ..++.
T Consensus 213 ~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l-~~~~r~~~~~~~g~-- 288 (456)
T d1c7ga_ 213 YDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEM-FSAAKELVVVYEGM-- 288 (456)
T ss_dssp EECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHH-HHHHHHHHHHHTCC--
T ss_pred EEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHH-HHHHHHhccccCCC--
Confidence 9999764321 1111100 012579999999999998876 8888876541 0111000 00000
Q ss_pred EeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCC
Q 043646 332 NYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKR 411 (625)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~ 411 (625)
...|..+...+.+.++.+. +..+.+.+..+ .+.++++.++|.+. ++.++.+.+
T Consensus 289 --------------------~~~g~~~~~~~~a~a~~l~--e~~~~~~l~~r-~~~~~~L~e~L~~~-g~~vv~p~g--- 341 (456)
T d1c7ga_ 289 --------------------PSYGGLAGRDMEAMAIGLR--EAMQYEYIEHR-VKQVRYLGDKLREA-GVPIVEPTG--- 341 (456)
T ss_dssp --------------------TTTTTCCHHHHHHHHHHHH--HHTCHHHHHHH-HHHHHHHHHHHHHT-TCCBCSSCC---
T ss_pred --------------------cccchhhHHHHHHHHHHHH--HhcCHHHHHHH-HHHHHHHHHHHHhc-cCCcccCCC---
Confidence 0122333333333333333 33444444433 44578888888776 555555432
Q ss_pred cceEEEEe----ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhC
Q 043646 412 QAILSFLV----YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 412 ~~i~~f~~----~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
....+.- .+... ........+...|....||..... +.+........+..
T Consensus 342 -~~~v~vda~~~~~~i~----------~~~~~~~~~~~~l~~~~GIr~~~~---g~~~~~~~~~~g~~------------ 395 (456)
T d1c7ga_ 342 -GHAVFLDARRFCPHLT----------QDQFPAQSLAASIYMETGVRSMER---GIVSAGRSKETGEN------------ 395 (456)
T ss_dssp -SSEEEEEHHHHCTTSC----------GGGCHHHHHHHHHHHHHSEECEEE---SHHHHCBCSSSCCB------------
T ss_pred -CcceeEechhhccCCC----------cccccHHHHHHHHHHHhCeeeccc---CccccccCCcccCc------------
Confidence 2222221 11110 001123344444445578864321 11110000000000
Q ss_pred CCCCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 488 YLGVKPGWTRITFP-YYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 488 ~~g~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
.--....+|++++ ...|+++||+++++|++++++...
T Consensus 396 -~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~ 433 (456)
T d1c7ga_ 396 -HRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKED 433 (456)
T ss_dssp -CCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGG
T ss_pred -cCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhh
Confidence 0002357999997 344999999999999999876544
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.68 E-value=1.9e-14 Score=149.19 Aligned_cols=318 Identities=12% Similarity=0.066 Sum_probs=193.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCc
Q 043646 113 SYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHH 192 (625)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (625)
+.+++........+++.|+++-|+.. .++|. ||..| +..++.++ +++||. |+++...|.
T Consensus 51 ~~YsR~~nPT~~~le~~la~LEg~~~--a~~~s-SGmaA-i~~~~l~l---------------~~~gd~--vv~~~~~yg 109 (394)
T d1e5ea_ 51 YIYTRLGNPTVSNLEGKIAFLEKTEA--CVATS-SGMGA-IAATVLTI---------------LKAGDH--LISDECLYG 109 (394)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCSE--EEEES-SHHHH-HHHHHHHH---------------CCTTCE--EEEESCCCH
T ss_pred ceecCCCCHHHHHHHHHHHHHhCCcc--eeeec-cchHH-HHHHHHhh---------------cccccc--cccccceee
Confidence 33455455567779999999999753 46664 66654 65554444 578885 888887776
Q ss_pred hhHHH----HHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHH-cCCEEE
Q 043646 193 SNLLS----WRQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQ-YGGFAC 267 (625)
Q Consensus 193 s~~~~----~~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~-~g~~vi 267 (625)
..... +...|+++.+++.. |+++++++++ +++++|.+..++||+..+.|++++++++++ +|++++
T Consensus 110 ~t~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~-----~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vv 179 (394)
T d1e5ea_ 110 CTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMK-----PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVI 179 (394)
T ss_dssp HHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEE
T ss_pred hhhHhHHHHhhccceeeeccCCC-----CHHHHHHhhc-----ccccEEEEeccCCcceeeehhhhhhhccccccCeEEE
Confidence 65433 34569999999865 6678888887 689999999999999999999999887765 789999
Q ss_pred EeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccc
Q 043646 268 FDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYL 345 (625)
Q Consensus 268 vD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (625)
+|.+.+.|+..-.+ ++ |+|+++.|..|+++|-.. .|+++++++..........
T Consensus 180 vDnT~atP~~~~Pl-~~---GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~--------------------- 234 (394)
T d1e5ea_ 180 ADNTFCSPMITNPV-DF---GVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI--------------------- 234 (394)
T ss_dssp EECTTTCTTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC---------------------
T ss_pred ecCcccCcccCCch-hc---CCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHH---------------------
Confidence 99987765542222 22 899999999999987653 5777777665210000000
Q ss_pred cchhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------------CCC
Q 043646 346 EDIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------------VKR 411 (625)
Q Consensus 346 ~~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------------~~~ 411 (625)
++...++++..... + ++........+.++..+++..+.++|++.|.| +|+.|.- ...
T Consensus 235 ----~~~~G~~lsp~~a~---l--l~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~ 305 (394)
T d1e5ea_ 235 ----KDITGSVISPHDAW---L--ITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 305 (394)
T ss_dssp ----CCCCCCCCCHHHHH---H--HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSC
T ss_pred ----HHhhCCCCChHHHH---H--HHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccC
Confidence 00111222222211 0 01112234445566667799999999999988 4655421 123
Q ss_pred cceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHHhCC
Q 043646 412 QAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQKGY 488 (625)
Q Consensus 412 ~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~g~ 488 (625)
++.++|.+..+.. ....+.+.| +.+.+.+.-|..-+ .|....+..++.+.-.+
T Consensus 306 G~~~sf~~~~~~~--------------~a~~f~~~l-~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~--------- 361 (394)
T d1e5ea_ 306 GSMITFILKSGFE--------------GAKKLLDNL-KLITLAVSLGGCESLIQHPASMTHAVVPKEEREA--------- 361 (394)
T ss_dssp CSEEEEEETTHHH--------------HHHHHHHTC-SSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHH---------
T ss_pred CCeeeeeccCCHH--------------HHHHHHHhC-CccceeeccCCccceeECccccccccCCHHHHHh---------
Confidence 7788887643210 012344444 33333333333222 12222222233222222
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 489 LGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 489 ~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
.|+.++.||||+|.-..++=++.|-++|+.+
T Consensus 362 ~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l 392 (394)
T d1e5ea_ 362 AGITDGMIRLSVGIEDADELIADFKQGLDAL 392 (394)
T ss_dssp TTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCcCEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 4677899999999754444444555555443
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.67 E-value=2.3e-16 Score=166.51 Aligned_cols=296 Identities=14% Similarity=0.072 Sum_probs=176.3
Q ss_pred HHHHHHHHHh----CCCCCC-cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHH
Q 043646 125 EASNYIKRCL----GGGQAD-AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWR 199 (625)
Q Consensus 125 ~~~~~ia~~~----g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (625)
++++.|++++ |+..++ +|+++ +|++++|+.++.++.-... ...+.||++ ||++.+.|+.+....+
T Consensus 104 ~L~~~i~~lh~~~gna~t~~~~IvvG-~Gsteli~~~~~AL~~~~~-------~~~~~pg~~--Vv~~~P~y~~Y~~~~~ 173 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKDRYIVFG-VGVTQLIHGLVISLSPNMT-------ATPDAPESK--VVAHAPFYPVFREQTK 173 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTTCEEEEE-SHHHHHHHHHHHHHSCCTT-------TCTTSCCEE--EEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhCCCCCCCCEEEEC-CCHHHHHHHHHHHhccccc-------cccCCCCCE--EEEecCccccHHHHHH
Confidence 3445555443 333333 68886 9999999999998831000 001457776 9999999999987777
Q ss_pred HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccc
Q 043646 200 QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKI 279 (625)
Q Consensus 200 ~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~i 279 (625)
..+.+...+.. |.+.++++++ ++++++++++||||||.+.. +-.+++++|.|+++..++. .
T Consensus 174 ~~~~~~~~~~~------D~~~~~~~~~-----~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f-~ 234 (425)
T d2hoxa1 174 YFDKKGYVWAG------NAANYVNVSN-----PEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHY-T 234 (425)
T ss_dssp HSCBTTEEEEE------EGGGGTTCSC-----GGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTT-S
T ss_pred HcCCCCCccCC------CHHHHHhhCC-----CCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccc-c
Confidence 77776655554 4555655555 57999999999999998732 1235899999999764421 1
Q ss_pred cCCCCCCCCCcEEEEcCCCCCCCCC-CceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChh
Q 043646 280 NLRSRNIDGYDAIFLATHKFLGGPG-TPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQ 358 (625)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~-g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~ 358 (625)
++... ..-++++.|++|.||.|+ .+|+++++++.+. +.+. ........+.+.
T Consensus 235 ~~~~~--~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~-~~~~------------------------~~~~~~~~~vs~ 287 (425)
T d2hoxa1 235 PIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDESVY-NNLL------------------------NYMTKNTEGTPR 287 (425)
T ss_dssp CCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCHHHH-HHHH------------------------HHHHHHTSSCCH
T ss_pred chhhh--cCCeEEEEeCHHhccCcchheeeEEeCCHHHH-HHHH------------------------HhhccCcccCCH
Confidence 12211 245789999999998665 3999988766521 1110 001111223333
Q ss_pred HHHHH-HHHHHHH---HHhh-----cCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCC----------CCCcceEEEEe
Q 043646 359 IVQMI-RAALAFW---VKEY-----IGYEVIKKQEDVYIESALGRILPNQNIQVLGNTS----------VKRQAILSFLV 419 (625)
Q Consensus 359 ~~~~~-~aal~~~---~~~~-----~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~----------~~~~~i~~f~~ 419 (625)
..+.. .+++... .... .-.+..+++.++..+++.+.|.+.+.+.+..... ....+.+.+.-
T Consensus 288 ~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~ 367 (425)
T d2hoxa1 288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVK 367 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEE
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeee
Confidence 33322 1222111 0000 1133445556666778888888876554432110 00111122222
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEe
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRIT 499 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis 499 (625)
.... ...++.++| .++||.+++|..|+. .++++|||
T Consensus 368 ~~~~---------------~~~~~~~lL-~e~gI~v~pGs~FG~----------------------------~~~yvRis 403 (425)
T d2hoxa1 368 CEWE---------------EDKDCYQTF-QNGRINTQNGVGFEA----------------------------SSRYVRLS 403 (425)
T ss_dssp ECSG---------------GGCSHHHHH-HHTTEECEEGGGGTS----------------------------CTTEEEEE
T ss_pred CCCC---------------hHHHHHHHH-HhCCEEEEechhcCC----------------------------CCCEEEEE
Confidence 1111 112344555 568999999987641 25899999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 043646 500 FPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 500 ~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+. .++++++.+++.|+++++.
T Consensus 404 l~--~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 404 LI--KTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp CS--SCHHHHHHHHHHHHHHHTC
T ss_pred ec--CCHHHHHHHHHHHHHHHhc
Confidence 85 4788999999999998753
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=2e-16 Score=166.31 Aligned_cols=214 Identities=17% Similarity=0.057 Sum_probs=137.3
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHH
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD-AIIFCGAGTTAAIKRLQ 157 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~-~vift~sGttaal~~l~ 157 (625)
+|.|..+..+.++.|.+++.+.+..- ..| .|....+..++.+++.+++.+..+..... .++.+++|....+...+
T Consensus 35 ~~~d~~g~~~~~~~V~~A~~~~~~~~--~~~--~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 110 (394)
T d2ay1a_ 35 VYKDATGHTPIMRAVHAAEQRMLETE--TTK--TYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALEL 110 (394)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHHC--CCC--CCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred CccCCCCCCCCCHHHHHHHHHHhhCC--CCC--CCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHH
Confidence 36666677777889999887665321 111 12223334556666666655544543222 44444222233344433
Q ss_pred HHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHHHhhhCCCCe
Q 043646 158 EVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDD--NGLLDIEALRSQLELYKAAKRPM 235 (625)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~~~ld~~~L~~~l~~~~~~~~~~ 235 (625)
..+ +.+||. |+++.+.|+.+...++..|++++.++... .+..+.+++++.+.. ..++++
T Consensus 111 ~~~---------------~~~gd~--V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 171 (394)
T d2ay1a_ 111 ARM---------------ANPDLR--VFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA--AKKGDM 171 (394)
T ss_dssp HHH---------------HCTTCC--EEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT--CCTTCE
T ss_pred hhh---------------cCCceE--EEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHhh--cccCcE
Confidence 333 478886 99999999999988999999999998754 345677777776652 224678
Q ss_pred EEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCccc-cCCCC----CCCCC-cEEEEcCCCCCCCCC-C
Q 043646 236 LGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKI-NLRSR----NIDGY-DAIFLATHKFLGGPG-T 305 (625)
Q Consensus 236 lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~i-d~~~~----~~~~~-D~v~~S~hK~lggp~-g 305 (625)
++++++++||||.+.+ +++|+++|++|+++++.|+++..-...- ..... ..... -+++.++.|.++.++ .
T Consensus 172 i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R 251 (394)
T d2ay1a_ 172 VLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRER 251 (394)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGC
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCccc
Confidence 9999999999999977 6789999999999999999965322110 00000 00022 344557788887553 4
Q ss_pred ceEEEEeccc
Q 043646 306 PGILLISKAL 315 (625)
Q Consensus 306 ~G~l~v~~~~ 315 (625)
+|++.+....
T Consensus 252 ~G~~~~~~~~ 261 (394)
T d2ay1a_ 252 TGCLLALCAD 261 (394)
T ss_dssp EEEEEEECSS
T ss_pred ccchhhchhH
Confidence 8998888765
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.5e-17 Score=175.15 Aligned_cols=210 Identities=13% Similarity=0.029 Sum_probs=136.9
Q ss_pred EeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCC-----CCCcEEEeCChHHH--
Q 043646 79 TYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGG-----QADAIIFCGAGTTA-- 151 (625)
Q Consensus 79 ~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~-----~~~~vift~sGtta-- 151 (625)
+|.|..+..+.++.|.+|....... ......|....+..+ +|+.+++++... .++.++.+ .|+++
T Consensus 35 ~~~d~~g~~p~~~~V~~A~~~l~~~---~~~~~~Y~p~~G~~~----lR~aia~~~~~~~~~~~~~~~i~~~-~~~~~~~ 106 (397)
T d3tata_ 35 LYYNEDGIIPQLQAVAEAEARLNAQ---PHGASLYLPMEGLNC----YRHAIAPLLFGADHPVLKQQRVATI-QTLGGSG 106 (397)
T ss_dssp SCCCTTSSCCCCHHHHHHHHHHTTS---CCSSBCCCCTTCCHH----HHHHHHHHHTCSSCHHHHTTCEEEC-CBSHHHH
T ss_pred CCcCCCCCCCCcHHHHHHHHHHHhC---cccCCCCCCcccCHH----HHHHHHHHHhhccCCcCCcCcEEEe-cCchhHH
Confidence 3666666677788999886543321 111111322233334 555565554332 12256554 33332
Q ss_pred --HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCCeEEEEecCCC--CCCCHHHHHHHHHH
Q 043646 152 --AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLAEVVEIGLDDN--GLLDIEALRSQLEL 227 (625)
Q Consensus 152 --al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--~~ld~~~L~~~l~~ 227 (625)
++..++..+ +.|||+ |+++.+.|+.+...++..|++++.+|++.+ +.+|.+++.+.+..
T Consensus 107 ~~~l~~~~~~~---------------~~pgd~--Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~ 169 (397)
T d3tata_ 107 ALKVGADFLKR---------------YFPESG--VWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT 169 (397)
T ss_dssp HHHHHHHHHHH---------------HCSSCC--CEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTT
T ss_pred HHHHHHHHhhh---------------cCCCCc--ceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhh
Confidence 344444333 578997 999999999999999999999999998753 46788888777662
Q ss_pred hhhCCCCeEEEEecccCccccccC---HHHHHHHHHHcCCEEEEeccCcCCCcccc-----CCC-CCCCCCcEEEEcCCC
Q 043646 228 YKAAKRPMLGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVKIN-----LRS-RNIDGYDAIFLATHK 298 (625)
Q Consensus 228 ~~~~~~~~lv~~~~~~n~TG~~~~---l~~I~~la~~~g~~vivD~A~~~g~~~id-----~~~-~~~~~~D~v~~S~hK 298 (625)
..++++++++++++||||.+.+ +++|+++|++|+++++.|+++..-....+ ... ......-+++.|++|
T Consensus 170 --~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 247 (397)
T d3tata_ 170 --LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp --CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHH
T ss_pred --cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcc
Confidence 2356889999999999999976 56789999999999999999763221100 000 000112356678999
Q ss_pred CCCCCC-CceEEEEeccc
Q 043646 299 FLGGPG-TPGILLISKAL 315 (625)
Q Consensus 299 ~lggp~-g~G~l~v~~~~ 315 (625)
.++.|+ .+|++++....
T Consensus 248 ~~~~~G~RiG~~~~~~~~ 265 (397)
T d3tata_ 248 IFSLYGERVGGLSVMCED 265 (397)
T ss_dssp HHTBTTTCCBCCEEECSS
T ss_pred cccccCccccccccchhH
Confidence 987654 38999888766
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=5.5e-14 Score=146.34 Aligned_cols=194 Identities=13% Similarity=0.123 Sum_probs=135.0
Q ss_pred ceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 043646 77 RLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRL 156 (625)
Q Consensus 77 ~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l 156 (625)
..+|.-.+-....++...+.... ... .+.+++......+.+++.|+++-|+.. .++| +||..| +..+
T Consensus 23 pPI~~sstf~~~~~~~~~~~~~~--------~~~-~~~YsR~~nPT~~~LE~~la~LE~~~~--a~~~-~SGmaA-i~~~ 89 (421)
T d2ctza1 23 VPIYPTTSYVFKSPEHAANLFAL--------KEF-GNIYSRIMNPTVDVLEKRLAALEGGKA--ALAT-ASGHAA-QFLA 89 (421)
T ss_dssp CCBCCCSCBCCSCHHHHHHHHTT--------TTG-GGSCBTTBCHHHHHHHHHHHHHHTCSE--EEEE-SSHHHH-HHHH
T ss_pred CCccCCCCeecCCHHHHHHhhcC--------CcC-CceecCCCCHHHHHHHHHHHHHhCCCe--EEEe-cChHHH-HHHH
Confidence 34677666555555444333211 011 133444444556778999999999753 4566 477755 5555
Q ss_pred HHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCC
Q 043646 157 QEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSW----RQSLAEVVEIGLDDNGLLDIEALRSQLELYKAAK 232 (625)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~ 232 (625)
+..+ +++||. |+++..-|.....-+ ...|+++.+++.+. ..+..++.++ +
T Consensus 90 ~~~l---------------~~~gd~--il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~-----~ 143 (421)
T d2ctza1 90 LTTL---------------AQAGDN--IVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----RPEEFLALTD-----E 143 (421)
T ss_dssp HHHH---------------CCTTCE--EEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC----CHHHHHHHCC-----T
T ss_pred HHhh---------------cccccc--eeecCCcCCchhHHHHHHHhhccccceeccccc----CcchhccccC-----C
Confidence 5554 578885 888888887665443 34699988876431 3445555555 6
Q ss_pred CCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCc-CCCc--cccCCCCCCCCCcEEEEcCCCCCCCCCC--ce
Q 043646 233 RPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS-GPYV--KINLRSRNIDGYDAIFLATHKFLGGPGT--PG 307 (625)
Q Consensus 233 ~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~-~g~~--~id~~~~~~~~~D~v~~S~hK~lggp~g--~G 307 (625)
+|++|.+..|+||+..+.|+++|+++||++|++++||.+.+ .|+. |+++ |+|+++.|..|+++|-.. .|
T Consensus 144 ~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~------GaDiVvhS~TKyl~GHsD~l~G 217 (421)
T d2ctza1 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAW------GAALVTHSLTKWVGGHGAVIAG 217 (421)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGG------TCSEEEEETTTTTTCSSCCCCE
T ss_pred CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecccccc------CCcEEEEechhhccCCCCeEEE
Confidence 89999999999999999999999999999999999999876 3443 4333 899999999999987643 57
Q ss_pred EEEEeccc
Q 043646 308 ILLISKAL 315 (625)
Q Consensus 308 ~l~v~~~~ 315 (625)
+++.++..
T Consensus 218 ~vv~~~~~ 225 (421)
T d2ctza1 218 AIVDGGNF 225 (421)
T ss_dssp EEEECSCS
T ss_pred EEEcCCcc
Confidence 77776654
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=8.4e-14 Score=146.12 Aligned_cols=335 Identities=15% Similarity=0.110 Sum_probs=204.1
Q ss_pred eEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
..|+|..+ .|-..+.|.+++.+++......+.. + ......++.+.++++.+.+ .+.|+.+|+.+
T Consensus 41 ~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~---~v~~~~sGseA 110 (404)
T d2byla1 41 RKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRA--F-----YNNVLGEYEEYITKLFNYH---KVLPMNTGVEA 110 (404)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT--E-----EESSHHHHHHHHHHHHTCS---EEEEESSHHHH
T ss_pred CEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccc--c-----ccchHHHHHHhhhhccccc---ccccccCcccc
Confidence 45888543 3567889999999988653222211 1 1123445666777887653 78888888888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc-------C-----CeEEEEecCCCCCCCHH
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS-------L-----AEVVEIGLDDNGLLDIE 219 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-------G-----~~vv~v~~~~~~~ld~~ 219 (625)
.-..+-.++.... +.. ....+...++......|.....++... + -.+..+|.+ |++
T Consensus 111 ~e~Aik~ar~~~~----~~~---~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~ 178 (404)
T d2byla1 111 GETACKLARKWGY----TVK---GIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLP 178 (404)
T ss_dssp HHHHHHHHHHHHH----HTT---CCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHH
T ss_pred chhHHHHHHHHhh----hcc---ccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHH
Confidence 4444433321100 000 012233334455555665544433221 1 134555543 789
Q ss_pred HHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCcc--ccCCCCCCCCCcEE
Q 043646 220 ALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVK--INLRSRNIDGYDAI 292 (625)
Q Consensus 220 ~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~--id~~~~~~~~~D~v 292 (625)
++++++.+ ++..+|++..+....|.+.+ +++|.++|++||+++|+|+++.. |-.. .....++. .+|++
T Consensus 179 ~l~~~l~~----~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv-~PDi~ 253 (404)
T d2byla1 179 ALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENV-RPDIV 253 (404)
T ss_dssp HHHHHHTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTC-CCSEE
T ss_pred HHHHhcCC----CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCC-CCCEE
Confidence 99999874 46788999888888898866 89999999999999999999763 2111 11111112 46999
Q ss_pred EEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHHHHH
Q 043646 293 FLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALAFWV 371 (625)
Q Consensus 293 ~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~~~~ 371 (625)
+++ |.+++. ..+|++++++++ .....+...+ +| ..|.|-.+++..+.++.+.
T Consensus 254 ~~g--K~l~gG~~p~~av~~~~~i--~~~~~~~~~~-~T----------------------~~gnpl~~aaa~a~L~~i~ 306 (404)
T d2byla1 254 LLG--KALSGGLYPVSAVLCDDDI--MLTIKPGEHF-ST----------------------YGGNPLGCRVAIAALEVLE 306 (404)
T ss_dssp EEC--GGGGTTSSCCEEEEECHHH--HTTSCTTSSC-CS----------------------STTCHHHHHHHHHHHHHHH
T ss_pred EEC--chhhCCCccceeeeechhh--hhccCCCCCC-cC----------------------CCcCHHHHHHHHHHHHHHH
Confidence 877 988754 347999999888 3344333221 11 1244544555556666652
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHhhCCCC--cEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhh
Q 043646 372 KEYIGYEVIKKQEDVYIESALGRILPNQ--NIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFND 449 (625)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~l~~~L~~l~--gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 449 (625)
. +.+.++...+.+++.+.|.++. .+.-+. ..+.+..+.+.... ......+...|.+
T Consensus 307 --~---~~l~~~~~~~g~~l~~~l~~l~~~~i~~vR----g~Gl~~~i~~~~~~-------------~~~~~~~~~~l~~ 364 (404)
T d2byla1 307 --E---ENLAENADKLGIILRNELMKLPSDVVTAVR----GKGLLNAIVIKETK-------------DWDAWKVCLRLRD 364 (404)
T ss_dssp --H---TTHHHHHHHHHHHHHHHHHTSCTTTEEEEE----EETTEEEEEECCCS-------------SCCHHHHHHHHHH
T ss_pred --h---cCchhhhhHhhHHHHHHHHhhccccceeee----ecccEEEEEEecCC-------------chhHHHHHHHHHh
Confidence 2 2455666777777777776642 221111 13345555443321 1234567777765
Q ss_pred hcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 450 LFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 450 ~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+||.+++. ..+.+|+++++.+|++|+|+++++|++.+.+
T Consensus 365 -~Gvl~~~~---------------------------------~~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 365 -NGLLAKPT---------------------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp -TTEECEEE---------------------------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -CCeEEecC---------------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 69988631 1367999999999999999999999998764
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=2.7e-14 Score=149.06 Aligned_cols=332 Identities=17% Similarity=0.161 Sum_probs=201.0
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQA 139 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~ 139 (625)
+..+.+..|+ -|+|..+ .|-..+.|.+++.+++......+... ..+...++.+.+.+......+
T Consensus 28 G~~l~d~dG~---~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~~~~ 97 (387)
T d1vefa1 28 GARVWDAEGN---EYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTL-------PTPMRGEFYRTLTAILPPELN 97 (387)
T ss_dssp BTEEEETTSC---EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTS-------CCHHHHHHHHHHHHTSCTTEE
T ss_pred cCEEEECCCC---EEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhccccccc-------CCchHHHHHHHhhhhccccce
Confidence 3445555553 4888654 56678899999999886543332221 122333444455554443323
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC------------CeEEE
Q 043646 140 DAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL------------AEVVE 207 (625)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G------------~~vv~ 207 (625)
.+.|+.||+++.-.++-.++.. .+.+.+|......|.....++...| ..+..
T Consensus 98 -~v~f~~sGseA~e~Aik~Ar~~---------------t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~ 161 (387)
T d1vefa1 98 -RVFPVNSGTEANEAALKFARAH---------------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEF 161 (387)
T ss_dssp -EEEEESSHHHHHHHHHHHHHHH---------------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEE
T ss_pred -eeccccCchHHHHHHHHHHHhh---------------cccceecccccCCCCCccceEeccCCccccCCCCCCCCCceE
Confidence 7899988998855555444321 1222244445556665554443222 24556
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCcccc--
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVKIN-- 280 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~id-- 280 (625)
+|.+ |++.|++.+. +++.+|++..+....|.+.+ +++|.++|++||+++|+|++++. |-....
T Consensus 162 ~p~~-----d~~~l~~~~~-----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~ 231 (387)
T d1vefa1 162 IPYN-----DVEALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFA 231 (387)
T ss_dssp ECTT-----CHHHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred eCCC-----CHHHHHHhcC-----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcc
Confidence 6654 7899998886 57889999988888898866 89999999999999999999763 222110
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIV 360 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 360 (625)
...++. .+|+++++ |.+++...++.++++++.. ....+...| +| ..|.|-.+
T Consensus 232 ~~~~~v-~PDi~~~g--K~l~gG~~~~~~~~~~~~~--~~~~~~~~g-~T----------------------~~gnPla~ 283 (387)
T d1vefa1 232 FEHFGI-VPDILTLA--KALGGGVPLGVAVMREEVA--RSMPKGGHG-TT----------------------FGGNPLAM 283 (387)
T ss_dssp HHHHTC-CCSEEEEC--GGGGTTSSCEEEEEEHHHH--HTSCTTSSC-CS----------------------STTCHHHH
T ss_pred cccCCc-CCceeeec--ccCCCCccccccccceeee--eccccCCcc-cc----------------------CCCCcchh
Confidence 011111 57999998 8886655568888888773 333333322 11 12334444
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC--CcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCC
Q 043646 361 QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN--QNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPL 438 (625)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l--~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l 438 (625)
+...+.++.+.. +.+.++...+.+++.+.|+++ +.+.-+. ..+.++.+.+..+.
T Consensus 284 aaa~a~L~~l~~-----~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr----g~Gl~~~ie~~~~~--------------- 339 (387)
T d1vefa1 284 AAGVAAIRYLER-----TRLWERAAELGPWFMEKLRAIPSPKIREVR----GMGLMVGLELKEKA--------------- 339 (387)
T ss_dssp HHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE----EETTEEEEEESSCS---------------
T ss_pred hhcccchhhccc-----ccccchHhhhhHHHHHHHHhcCCCceEEEe----ecceEEEEEEeCCc---------------
Confidence 444455665532 244556666777777777664 3332111 12345555443221
Q ss_pred ChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 043646 439 HGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEF 518 (625)
Q Consensus 439 ~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~ 518 (625)
...+.+.+.+ +|+.+... .++.+|+++++.+|++|+|+++++|++
T Consensus 340 -~~~~~~~~~~-~g~l~~~~---------------------------------g~~~ir~~Ppl~it~~~ld~~~~~i~~ 384 (387)
T d1vefa1 340 -APYIARLEKE-HRVLALQA---------------------------------GPTVIRFLPPLVIEKEDLERVVEAVRA 384 (387)
T ss_dssp -HHHHHHHHHH-HCEECEES---------------------------------STTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHH-CCCeEEec---------------------------------CCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 3456665544 67765421 136799999999999999999999998
Q ss_pred HH
Q 043646 519 IA 520 (625)
Q Consensus 519 ~~ 520 (625)
++
T Consensus 385 aL 386 (387)
T d1vefa1 385 VL 386 (387)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.64 E-value=7.5e-15 Score=149.17 Aligned_cols=299 Identities=13% Similarity=0.079 Sum_probs=182.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHH----HHH
Q 043646 125 EASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLS----WRQ 200 (625)
Q Consensus 125 ~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~----~~~ 200 (625)
.++++|+++-|+.. .++| +||..| +...+..+ +++||. |+++..-|.....- ++.
T Consensus 2 aLE~~la~Leg~~~--a~~~-sSGMaA-i~~~l~~l---------------l~~Gd~--iv~~~~~Yg~t~~~~~~~l~~ 60 (331)
T d1pffa_ 2 ALEGKIAKLEHAEA--CAAT-ASGMGA-IAASVWTF---------------LKAGDH--LISDDCLYGCTHALFEHQLRK 60 (331)
T ss_dssp HHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHHHH---------------CCTTCE--EEEESCCCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCe--EEEE-CCHHHH-HHHHHHHH---------------hCCCCE--EEEeCCCchHHHHHHHHHHHh
Confidence 36789999998752 4556 477666 54444444 589985 88877777665443 345
Q ss_pred cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHH-HHcCCEEEEeccCcCCCc--
Q 043646 201 SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLL-HQYGGFACFDFAASGPYV-- 277 (625)
Q Consensus 201 ~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la-~~~g~~vivD~A~~~g~~-- 277 (625)
.|+++.+++.. |++.++++++ ++|++|.+..++||+..+.|++.+++++ |++|++++||.+.+.|+.
T Consensus 61 ~gi~~~~~d~~-----d~~~~~~~i~-----~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~ 130 (331)
T d1pffa_ 61 FGVEVDFIDMA-----VPGNIEKHLK-----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN 130 (331)
T ss_dssp TTCEEEEECTT-----STTHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC
T ss_pred cCeEEEEeccc-----chhhHhhhcc-----cccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccccc
Confidence 79999998765 6788888887 6899999999999999999999999985 568999999998665432
Q ss_pred cccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCC
Q 043646 278 KINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGG 355 (625)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~g 355 (625)
|+++ |+|+++.|..|+++|-.. .|+++.+++........... .....
T Consensus 131 pl~~------GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~-------------------------~~~G~ 179 (331)
T d1pffa_ 131 PLDL------GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIK-------------------------DITGA 179 (331)
T ss_dssp GGGG------TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCC-------------------------CCCCC
T ss_pred cccc------CCCEEEecchhhcCCCCccccccccccccchhhhhhhhhh-------------------------hccCC
Confidence 3332 899999999999987543 47777776552100000000 00011
Q ss_pred ChhHH--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcE-EEeCCCC-------------CCCcceEEEEe
Q 043646 356 TPQIV--QMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNI-QVLGNTS-------------VKRQAILSFLV 419 (625)
Q Consensus 356 t~~~~--~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv-~v~~~~~-------------~~~~~i~~f~~ 419 (625)
.++.. ..+..+++- ...+.++..+++..+.+.|.+.|.| +|+.|.- ...++.++|.+
T Consensus 180 ~l~p~~a~ll~rgl~T-------l~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l 252 (331)
T d1pffa_ 180 IISPHDAWLITRGTLT-------LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDV 252 (331)
T ss_dssp CCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEEC
T ss_pred CCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceee
Confidence 12111 111222222 2233455556688888888888877 4554421 22467788877
Q ss_pred ccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCC---chhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEE
Q 043646 420 YSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACA---GPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWT 496 (625)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~i 496 (625)
.... ....+.+.| +.+++.+.-|...+ .|..-.+..+.++...+ .|+.++.|
T Consensus 253 ~~~~---------------~~~~f~d~l-~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~---------~Gi~~~li 307 (331)
T d1pffa_ 253 DGLE---------------KAKKVLDNC-HVVSLAVSLGGPESLIQHPASMTHAGVPKEEREA---------AGLTDNLI 307 (331)
T ss_dssp SSHH---------------HHHHHHHTC-SSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHH---------TTCCTTEE
T ss_pred ccHH---------------HHHHHHHhC-CcceecccCCCCceeEeCccccccccCCHHHHHh---------cCCCcCeE
Confidence 4210 122344444 23444444454332 13332233343332222 47788999
Q ss_pred EEecCCCCCHHHHHHHHHHHH
Q 043646 497 RITFPYYMSNEEFEFILAALE 517 (625)
Q Consensus 497 Ris~~~~~t~edid~ll~aL~ 517 (625)
|||+|.-..++=++.+-++|+
T Consensus 308 RlsvGlE~~~DLi~Dl~~AL~ 328 (331)
T d1pffa_ 308 RLSVGCENVQDIIDDLKQALD 328 (331)
T ss_dssp EEECCSSCHHHHHHHHHHHHH
T ss_pred EEEeeeCCHHHHHHHHHHHHH
Confidence 999997444444444444443
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=3.4e-14 Score=147.19 Aligned_cols=310 Identities=13% Similarity=0.089 Sum_probs=190.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+.+++.++++-|+.. .++| +||..| +..++.++ +++||. |+++..-|...
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~~--a~~~-~SGMaA-i~~~l~~l---------------~~~Gd~--iv~~~~~Yg~T 110 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGAG--CVLF-PCGAAA-VANSILAF---------------IEQGDH--VLMTNTAYEPS 110 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHHHH---------------CCTTCE--EEEETTSCHHH
T ss_pred eECCCChhHHHHHHHHHHHhCCcc--EEEe-ccccce-eeehhhcc---------------cCCCCe--EEEecccccch
Confidence 444445566778999999999752 3555 466665 55554444 578885 88888888877
Q ss_pred HHHHH----HcCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHc--CCEEEE
Q 043646 195 LLSWR----QSLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQY--GGFACF 268 (625)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~--g~~viv 268 (625)
...+. ..|+++..++.. |.++++++++ +++++|.+..++||+..+.|+++|+++|+++ |++++|
T Consensus 111 ~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~-----~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vV 180 (391)
T d1cl1a_ 111 QDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ-----PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMI 180 (391)
T ss_dssp HHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEE
T ss_pred hhhhhhcccccccccccccCc-----cccccccccc-----cccceeeecccCcccccccccHHHHHHHHhccCCcEEEE
Confidence 65554 358898888754 5677787777 6899999999999999999999999999875 999999
Q ss_pred eccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEeccccccCCCCCcccCCceEEeecccccccccccc
Q 043646 269 DFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 269 D~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
|.+.+.|+..-.+. + |+|+++.|..|+++|-.. .|+++.+++... .+.
T Consensus 181 DnT~atP~~~~Pl~-~---GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~--~~~------------------------ 230 (391)
T d1cl1a_ 181 DNTWAAGVLFKALD-F---GIDVSIQAATKYLVGHSDAMIGTAVCNARCWE--QLR------------------------ 230 (391)
T ss_dssp ECTTTTTTSSCGGG-G---TCSEEEEETTTTTTCSSSCCCEEEEECTTTHH--HHH------------------------
T ss_pred eccccchhhhcccc-c---ccceEEeecchhccccccccccceeccccccc--cch------------------------
Confidence 99987765432222 2 899999999999987653 466666555421 100
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEE-EeCCCC-------------CCCc
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQ-VLGNTS-------------VKRQ 412 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~-v~~~~~-------------~~~~ 412 (625)
. ..+...++.+..... + ++........+.++..+.+..+.+.|++.|.+. |+.|.- ...+
T Consensus 231 ~-~~~~~G~~~~p~~a~---l--l~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~g 304 (391)
T d1cl1a_ 231 E-NAYLMGQMVDADTAY---I--TSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSS 304 (391)
T ss_dssp H-HHHHTTCCCCHHHHH---H--HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCC
T ss_pred h-hhhcccccCCchhhh---h--hhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCC
Confidence 0 111122232222110 0 011122344455566667889999999998886 444321 1235
Q ss_pred ceEEEEeccCCCCCCccccccCCCCCChHHHHHHhh--hhcCeeeecCCCCCc---hhhHhhhcCChhhHHHHHHHHHhC
Q 043646 413 AILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFN--DLFGIQARGGCACAG---PYGHTLLAFDQTRSLEIRSAIQKG 487 (625)
Q Consensus 413 ~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~--~~~gI~v~~G~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g 487 (625)
+.++|.+.... +.+.+.+.+. +.+.+.+.-|...+- +.......+. .+.
T Consensus 305 g~~sf~l~~~~---------------~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~-----------~~~ 358 (391)
T d1cl1a_ 305 GLFSFVLKKKL---------------NNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR-----------PQG 358 (391)
T ss_dssp SEEEEEESSCC---------------CHHHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTS-----------TTC
T ss_pred cceeeeecCCC---------------CHHHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCC-----------chH
Confidence 67888875431 2334444442 223333333322110 1111111111 012
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 043646 488 YLGVKPGWTRITFPYYMSNEEFEFILAALEFIAA 521 (625)
Q Consensus 488 ~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~ 521 (625)
..|+.++.||||+|. ||++.|++-|++.++
T Consensus 359 ~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~ 388 (391)
T d1cl1a_ 359 EIDFSGTLIRLHIGL----EDVDDLIADLDAGFA 388 (391)
T ss_dssp CCCCCSCEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred hcCCCcCEEEEEecc----CCHHHHHHHHHHHHH
Confidence 247788999999996 566666666655544
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=7.1e-14 Score=148.19 Aligned_cols=397 Identities=13% Similarity=0.062 Sum_probs=238.1
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCccccCCCCCCceEeccCCCCCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHH
Q 043646 43 HHPPHSKPSEEKLAWLRSQIIGNDVEFDYSFGKRRLTYADHTASGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKM 122 (625)
Q Consensus 43 ~~~~~~~~~~~~~~~lr~~~~~~~~~~~~p~g~~~~~Yld~~~~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~ 122 (625)
..+|. .+..+.++.+++..--. ...+ ...+.+... .-..++.|.+.+...+..+ .|-.. -..++++.+.
T Consensus 39 l~LP~-~sE~El~r~~~~la~kN-~~~~-----~~~~~lG~~-~~hy~P~v~~~~~~~~TaY--TPYQP-aEiSQG~LQa 107 (471)
T d1wyub1 39 PRLPE-VDELTLVRHYTGLSRRQ-VGVD-----TTFYPLGSC-TMKYNPKLHEEAARLFADL--HPYQD-PRTAQGALRL 107 (471)
T ss_dssp CCCCC-CCHHHHHHHHHHHHTTC-CCTT-----TSCCCBTTT-CCCCCCHHHHHHHHTTSSC--CTTSC-GGGCHHHHHH
T ss_pred CCCCC-CCHHHHHHHHHHHHhCC-CCcc-----ccccCCccc-cCccCcchhhhHHHHHhcc--CCCCC-HHHHHHHHHH
Confidence 44454 55566667776655322 1111 122222221 2234557777776654322 12210 1346788889
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
.-+....|++++|.+-. +.-.- .|+++....+..+..... +++ ..-....+++.+..|..........+
T Consensus 108 lfEfQtmi~eLTGMdva-NaS~y-DGatA~aeA~~ma~r~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (471)
T d1wyub1 108 MWELGEYLKALTGMDAI-TLEPA-AGAHGELTGILIIRAYHE----DRG-----EGRTRRVVLVPDSAHGSNPATASMAG 176 (471)
T ss_dssp HHHHHHHHHHHHTCSEE-ECCCS-SHHHHHHHHHHHHHHHHH----HTT-----CTTTCCEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcc-ccccc-hHHHHHHHHHHHHHHHhh----hcc-----cccccccccCCcccccceeeeeeccc
Confidence 99999999999999732 11122 577774444444332100 000 00111134444444444444445567
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHHHcCCEEEEeccCcCCCccccCC
Q 043646 203 AEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVKINLR 282 (625)
Q Consensus 203 ~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~~~g~~vivD~A~~~g~~~id~~ 282 (625)
..++.++.+..+..|.+.+..... +.+..+++..+++.-+.....+++++++|+.|..+++|.+....... +.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~--l~ 249 (471)
T d1wyub1 177 YQVREIPSGPEGEVDLEALKRELG-----PHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMG--WA 249 (471)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHCS-----TTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TC
T ss_pred ceeecccccccccccchhhhhhhh-----ccccceeeccCCCcccccchhhhhHHHHHhccccccccccchhhhhh--cc
Confidence 888889888888899998887765 56788888887766555566999999999999999999873322111 11
Q ss_pred CCCCCCCcEEEEcCCCCCCCC-----CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCCh
Q 043646 283 SRNIDGYDAIFLATHKFLGGP-----GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTP 357 (625)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp-----~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~ 357 (625)
.-...+.|+++...|+.||.| .+.|++.+++++ .+.++-...+++.-.+.. ....+.-.+|...+|.
T Consensus 250 ~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~--~R~~PGRiV~~~~~~~~~------~~~REqhIrRe~actn 321 (471)
T d1wyub1 250 RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL--APYLPVPLVERGEEGFYL------DFDRPKSIGRVRSFYG 321 (471)
T ss_dssp CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG--GGGCCSCEEEECSSCEEE------ECCCTTCCCCSSSTTS
T ss_pred ccCcccccccccccccccccccccccccccceeehhhh--hccCCCceecCCCccccc------cCCCcccccchhhhhh
Confidence 101126788888888877555 237899999998 445543333332211110 0111111244455665
Q ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceE-EEEeccCCCCCCccccccCCC
Q 043646 358 QIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAIL-SFLVYSTTNSSPENMKIERNK 436 (625)
Q Consensus 358 ~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~-~f~~~~~~~~~~~~~~~~~~~ 436 (625)
..+..+++++-+.+....|+.++.+++...+.|+.++|+. +|+++..+. +.+ -|.+..+ .
T Consensus 322 qaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~~~~~-----~ff~EFvv~~~-------------~ 382 (471)
T d1wyub1 322 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRVPYDG-----PSMHEFVAQPP-------------E 382 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBCSSCS-----SCCSCEEEBCS-------------T
T ss_pred hHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCceeccCc-----ceeeEEeecCC-------------C
Confidence 5555555544444447789999999999999999999965 688875432 222 2223221 2
Q ss_pred CCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 043646 437 PLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAAL 516 (625)
Q Consensus 437 ~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL 516 (625)
+++..++++.|++ +||......+. ...++.+-|++.-.+|++|||+|+++|
T Consensus 383 ~~~~~~i~k~L~~-~G~~~~~~~~p----------------------------~~~~~~llv~vTE~~tkedID~lv~aL 433 (471)
T d1wyub1 383 GFRALDLAKGLLE-LGFHPPTVYFP----------------------------LIVKEALMVEPTETEAKETLEAFAEAM 433 (471)
T ss_dssp TCCHHHHHHHHHH-TTCCCCEESCS----------------------------TTSTTCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-cCCCCCcccCc----------------------------CCCCCeEEEecCCCCCHHHHHHHHHHH
Confidence 4556789998876 68864222111 112467889999999999999999999
Q ss_pred HHHHHhhh
Q 043646 517 EFIAAYGH 524 (625)
Q Consensus 517 ~~~~~~~~ 524 (625)
++++.+..
T Consensus 434 ~~i~~e~~ 441 (471)
T d1wyub1 434 GALLKKPK 441 (471)
T ss_dssp HHHHTSCH
T ss_pred HHHHHhhH
Confidence 99998864
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.63 E-value=7.3e-16 Score=165.57 Aligned_cols=335 Identities=14% Similarity=0.036 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHc
Q 043646 122 MVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQS 201 (625)
Q Consensus 122 ~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (625)
.+.++++++++++|.+ .++||.||+.++...+..++.. .+. ...... .++.+...|.+........
T Consensus 76 ~~~~le~~~a~l~g~~---~~~~~~sGt~A~~~a~~~~~~~------g~~---~~~~~~--~~i~~~~h~~t~~~~~~~~ 141 (465)
T d1ax4a_ 76 NYYDLKDKAKELFNYD---YIIPAHQGRGAENILFPVLLKY------KQK---EGKAKN--PVFISNFHFDTTAAHVELN 141 (465)
T ss_dssp HHHHHHHHHHHHHCCC---EEEEESSHHHHHHHHHHHHHHH------HHH---TTCCSS--CEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC---EEEECCCcHHHHHHHHHHHHHH------HHh---cCCCCC--eEEeccchhhhhHHHHHHc
Confidence 3556888999999974 7899988888754444333310 001 012222 2555555555655556667
Q ss_pred CCeEEEEec----------CCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccc-c---CHHHHHHHHHHcCCEEE
Q 043646 202 LAEVVEIGL----------DDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIY-S---DTRSIARLLHQYGGFAC 267 (625)
Q Consensus 202 G~~vv~v~~----------~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~-~---~l~~I~~la~~~g~~vi 267 (625)
|+.++.+.. ...+.+|+++|+++|++. ....+.+++++..+|..|.. . ++++|.++|++||+++|
T Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~ 220 (465)
T d1ax4a_ 142 GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQH-GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVV 220 (465)
T ss_dssp TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHH-CGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhh-ccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEE
Confidence 888776532 125789999999999853 11245677777766665543 3 47889999999999999
Q ss_pred EeccCcCCCccc------cCCCC--------CCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEe
Q 043646 268 FDFAASGPYVKI------NLRSR--------NIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNY 333 (625)
Q Consensus 268 vD~A~~~g~~~i------d~~~~--------~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~ 333 (625)
+|+|+..+.... ..... .....|++++|.||.+++|.+ |++++++...........
T Consensus 221 ~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~-g~l~~~~~~~~~~~~~~~--------- 290 (465)
T d1ax4a_ 221 MDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQR--------- 290 (465)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHH---------
T ss_pred EECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccc-eeEeecchHHHHHhhhcc---------
Confidence 999986432211 00000 001368999999999887775 888887654110000000
Q ss_pred eccccccccccccchhhhhcC---CChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCC
Q 043646 334 VNAFDEKDTLYLEDIEERENG---GTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVK 410 (625)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~---gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~ 410 (625)
....... +....... +++...+.+....+ ..++....++++.+.|.+. ++.++.+.
T Consensus 291 --------------~~~~~~~~~~~~~~~~~~--~a~~~~~~e~~~~~-~~~~~~~~~~~l~~~L~~~-g~~~v~~~--- 349 (465)
T d1ax4a_ 291 --------------CVPMEGFVTYGGLAGRDM--AAMVQGLEEGTEEE-YLHYRIGQVKYLGDRLREA-GIPIQYPT--- 349 (465)
T ss_dssp --------------HHHHTCSTTTTTCCHHHH--HHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHT-TCCBCSSC---
T ss_pred --------------ccccccCCCcchhhHHHH--HHHhhhhHHhhhHH-HHHHHHHHHHHHHHHHHhh-cCccccCC---
Confidence 0011111 11222222 22222222333333 3444455688899999876 55555543
Q ss_pred CcceEEEEeccCCCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCC
Q 043646 411 RQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLG 490 (625)
Q Consensus 411 ~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g 490 (625)
..+..+.-....... ..+...........+..+.||....... +........+. ...
T Consensus 350 -~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ll~~~GI~~~~~~~---~~~~~~~~~g~-------------~~~ 406 (465)
T d1ax4a_ 350 -GGHAVFVDCKKLVPQ------IPGDQFPAQAVINALYLESGVRAVEIGS---FLLGRDPATGE-------------QKH 406 (465)
T ss_dssp -CSSEEEEESTTTCTT------SCGGGCHHHHHHHHHHHHHCEECEEESH---HHHCBCTTTCS-------------BCC
T ss_pred -CcceeeeehhhhcCC------CccccchhHHHHHHHHHhcCceeccccc---cccccccccCC-------------ccC
Confidence 233333221111000 0111122233344444567887643221 11000000000 000
Q ss_pred CCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhhhh
Q 043646 491 VKPGWTRITFP-YYMSNEEFEFILAALEFIAAYGHR 525 (625)
Q Consensus 491 ~~~g~iRis~~-~~~t~edid~ll~aL~~~~~~~~~ 525 (625)
...+.+|++++ ...|++|+|+++++|++++++..+
T Consensus 407 ~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~ 442 (465)
T d1ax4a_ 407 ADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT 442 (465)
T ss_dssp CSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred CCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 12468999975 445999999999999999887655
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.4e-13 Score=145.54 Aligned_cols=354 Identities=12% Similarity=0.079 Sum_probs=197.4
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|+|..++ |-.++.|.+++.+++..... .... . .+.+...++.+.+.+.+..+..+.+.|+.+|+++
T Consensus 40 ~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~-~----~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA 113 (425)
T d1sffa_ 40 REYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH-TCFQ-V----LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEA 113 (425)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC-CCTT-T----EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHH
T ss_pred CEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC-cccc-c----ccCcHHHHHHHHHHhhhhhcccceeeeeccccch
Confidence 358885543 56788999999998865321 1110 1 1123445577788888865543478898888888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcCC-------------eEEEEecCC--CCCC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSLA-------------EVVEIGLDD--NGLL 216 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~v~~~~--~~~l 216 (625)
.-.++-.++.. .+...+|-.....|.....+....|. .....+.+. ....
T Consensus 114 ~e~Alk~ar~~---------------t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (425)
T d1sffa_ 114 VENAVKIARAA---------------TKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGIS 178 (425)
T ss_dssp HHHHHHHHHHH---------------HTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBC
T ss_pred hhhHHHHhhhh---------------hcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCcccccccc
Confidence 54444333321 12222344455566555544443321 122222221 1111
Q ss_pred C---HHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCccc--cCCCCCC
Q 043646 217 D---IEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVKI--NLRSRNI 286 (625)
Q Consensus 217 d---~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~~i--d~~~~~~ 286 (625)
. .+..++.+......+.+.+|++..+....|.+.| ++.|.++|++||+++|+|+++.. |-... -....+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv 258 (425)
T d1sffa_ 179 EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGV 258 (425)
T ss_dssp HHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTS
T ss_pred chhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCC
Confidence 1 1112222222122235778999888888888755 78899999999999999999874 22111 1111111
Q ss_pred CCCcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHH
Q 043646 287 DGYDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAA 366 (625)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aa 366 (625)
.+|+++++ |.+++...+|++++++++. +...+...+ +| ..|.|-.+++..+.
T Consensus 259 -~PDi~~~g--K~l~gG~P~~av~~~~~i~--~~~~~~~~~-~T----------------------~~gnpl~~aaa~a~ 310 (425)
T d1sffa_ 259 -APDLTTFA--KSIAGGFPLAGVTGRAEVM--DAVAPGGLG-GT----------------------YAGNPIACVAALEV 310 (425)
T ss_dssp -CCSEEEEC--GGGGTSSCCEEEEEEHHHH--TTSCTTSBC-CS----------------------SSSCHHHHHHHHHH
T ss_pred -Cccceecc--cccCCCcceEEEEEcHHHH--HhhCCCCCC-CC----------------------CCcCHHHHHHHHHH
Confidence 57999987 9997655689999999983 333333221 11 12444444444556
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHHHHHH
Q 043646 367 LAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPFVATL 446 (625)
Q Consensus 367 l~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 446 (625)
++.+..+ .-.+.+.+....+.+.+.+.+++.+.+.-+.. .+.++.+.+..+.... ..... -...+.+.
T Consensus 311 L~~i~~~-~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg----~Gl~~~i~f~~~~~~~------~~~~~-~~~~~~~~ 378 (425)
T d1sffa_ 311 LKVFEQE-NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG----LGAMIAIELFEDGDHN------KPDAK-LTAEIVAR 378 (425)
T ss_dssp HHHHHHT-THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE----ETTEEEEEEBGGGCTT------SBCHH-HHHHHHHH
T ss_pred HHHHHHh-hhhhhhhhhhhhhhhhhhhhHhhCCceEEEEc----cccEEEEEEeccCccC------CccHH-HHHHHHHH
Confidence 6665211 11333333334444444444555554432221 3456666554321100 00000 12356666
Q ss_pred hhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhhh
Q 043646 447 FNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 447 L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~~~ 524 (625)
+.+ +||.+.+... ..+.+|+++++.+|++|+|+++++|++++.+..
T Consensus 379 l~~-~Gvl~~~~g~-------------------------------~~n~i~~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 379 ARD-KGLILLSCGP-------------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp HHH-TTEECEEEST-------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-CCCEEeccCC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 655 6998864211 137899999999999999999999999988753
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.62 E-value=7.8e-13 Score=138.75 Aligned_cols=345 Identities=14% Similarity=0.149 Sum_probs=199.0
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..| .-|+|..+ .|-..+.|.+++.+++......... . .......+.+.++++.+.+
T Consensus 31 ~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~--- 97 (404)
T d1z7da1 31 VFVYDVND---KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA--F-----FSVPLGICERYLTNLLGYD--- 97 (404)
T ss_dssp TEEEETTC---CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT--S-----EEHHHHHHHHHHHHHHTCS---
T ss_pred CEEEECCC---CEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccc--c-----chHHHHHHHHhhhhccccc---
Confidence 44444445 35888543 3556889999999988653211111 1 1123455667777887753
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCch-hHHHHHHcCC------------eEEE
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHS-NLLSWRQSLA------------EVVE 207 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G~------------~vv~ 207 (625)
.+.|+.+|+.+.-..+..++... .+.. ....... .++.....++. ....+...+. .+..
T Consensus 98 ~v~~~~sgs~a~~~a~k~ar~~~----~~~~---~~~~~~~-~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (404)
T d1z7da1 98 KVLMMNTGAEANETAYKLCRKWG----YEVK---KIPENMA-KIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSK 169 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHH----HHTS---CCCTTCC-EEEEETTC--------------------------CEEE
T ss_pred eeeeeccccchHHHHHHHHHHHH----hhcc---ccccccc-ccccccccCCCCcccccccccccccccCCCCCCccccc
Confidence 67777788887444443332100 0000 0112221 24444333333 2222221111 2222
Q ss_pred EecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcC-CCc--ccc
Q 043646 208 IGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYV--KIN 280 (625)
Q Consensus 208 v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~-g~~--~id 280 (625)
+|. -+.+.++..+.. +++.+|++..+....|.+.| +++|.++|++||+++|+|+++.. |-. ...
T Consensus 170 ~~~-----~~~~~l~~~~~~----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~ 240 (404)
T d1z7da1 170 VPY-----DDLEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 240 (404)
T ss_dssp ECT-----TCHHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSG
T ss_pred ccc-----chHHHHHHHhcC----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccccc
Confidence 332 266777777653 46789999999888999877 89999999999999999999862 211 111
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhH
Q 043646 281 LRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQI 359 (625)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 359 (625)
...++. .+|+++++ |.+++. ..+|++++++++ .....+...+ +| ..|.|-.
T Consensus 241 ~e~~gv-~PDivt~g--K~l~gG~~p~~~v~~~~~i--~~~~~~~~~~-~T----------------------~~gnpl~ 292 (404)
T d1z7da1 241 VHHYNV-KPDVILLG--KALSGGHYPISAVLANDDI--MLVIKPGEHG-ST----------------------YGGNPLA 292 (404)
T ss_dssp GGGGTC-CCSEEEEC--GGGGTTSSCCEEEEECHHH--HTTCCTTCCC-CT----------------------TTTCHHH
T ss_pred ccccCC-CCCEEEEc--ccccCCCCCcccccchHHH--HccCCCCCcC-cC----------------------CCCCcch
Confidence 111222 57999887 998653 346999999998 3344433221 11 1244444
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCC
Q 043646 360 VQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLH 439 (625)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~ 439 (625)
+++..+.++.+..+ .-.+.+.+....+.+.+.+.+++.+.+.-+.. ++.++.+....+. ..
T Consensus 293 ~aaa~a~L~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg----~Gl~~~i~~~~~~--------------~~ 353 (404)
T d1z7da1 293 ASICVEALNVLINE-KLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAIEFKNEL--------------VN 353 (404)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEECTTT--------------CC
T ss_pred hhhhhhhhhhhhcc-hhhhhhccchhHHHHHHHHHHhcCCCeEEEEe----eCcEEEEEEcCCc--------------cc
Confidence 44445556655322 22445555555566667777777666532221 3456666554321 22
Q ss_pred hHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 043646 440 GPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFI 519 (625)
Q Consensus 440 ~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~ 519 (625)
...+...|.+ +||.+++. ..+.||+++++.+|++|+|+++++|+++
T Consensus 354 ~~~~~~~l~~-~Gl~~~~~---------------------------------~~~~ir~~Ppl~it~~~id~~~~~l~~a 399 (404)
T d1z7da1 354 VLDICLKLKE-NGLITRDV---------------------------------HDKTIRLTPPLCITKEQLDECTEIIVKT 399 (404)
T ss_dssp HHHHHHHHHH-TTEECCEE---------------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCeEEecC---------------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 4567777755 79987531 1367999999999999999999999998
Q ss_pred HHh
Q 043646 520 AAY 522 (625)
Q Consensus 520 ~~~ 522 (625)
+++
T Consensus 400 lk~ 402 (404)
T d1z7da1 400 VKF 402 (404)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=2.5e-14 Score=148.11 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchh
Q 043646 115 VGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSN 194 (625)
Q Consensus 115 ~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (625)
+++......+.+++.|+++-|+.. .++|. ||. +++..++.. +.+||. |+++..-|...
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~~--a~~~s-SGm-aAi~~~l~~----------------l~~gd~--iv~~~~~yg~t 106 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQY--GLAFS-SGS-ATTATILQS----------------LPQGSH--AVSIGDVYGGT 106 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSE--EEEES-CHH-HHHHHHHHT----------------SCSSCE--EEEESSCCHHH
T ss_pred eeCCCChHHHHHHHHHHHHhCCce--EEEec-Cch-hHHHhhhhc----------------ccCCCe--eeeeeeecccc
Confidence 444444556778999999998752 46664 785 556655432 467885 66766666665
Q ss_pred HHHHHH----cCCeEEEEecCCCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccCHHHHHHHHH----HcCCEE
Q 043646 195 LLSWRQ----SLAEVVEIGLDDNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSDTRSIARLLH----QYGGFA 266 (625)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~l~~I~~la~----~~g~~v 266 (625)
...+.. .|.++..++. +.++++++++ +++++|.+..|.||+..+.|+++|++++| ++|+++
T Consensus 107 ~~~~~~~l~~~gi~~~~~~~------~~~~~~~~i~-----~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~l 175 (393)
T d1n8pa_ 107 HRYFTKVANAHGVETSFTND------LLNDLPQLIK-----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175 (393)
T ss_dssp HHHHHHTSTTTCSCCEEESS------HHHHHHHHSC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEE
T ss_pred hhhhhhhhhcccceeEEeec------chHHHHHHhh-----hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceE
Confidence 545443 4778777752 4577888887 78999999999999999999999999999 678999
Q ss_pred EEeccCcCCCccccCCCCCCCCCcEEEEcCCCCCCCCCC--ceEEEEecc
Q 043646 267 CFDFAASGPYVKINLRSRNIDGYDAIFLATHKFLGGPGT--PGILLISKA 314 (625)
Q Consensus 267 ivD~A~~~g~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~l~v~~~ 314 (625)
+||.+.+.++..-.+ ++ |+|+++.|..|+++|-.. .|+++.++.
T Consensus 176 vVDnT~atP~~~~Pl-~~---GADiVvhS~TKyi~GhsDv~~G~v~~~~~ 221 (393)
T d1n8pa_ 176 VVDNTFLSPYISNPL-NF---GADIVVHSATKYINGHSDVVLGVLATNNK 221 (393)
T ss_dssp EEECTTTHHHHCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEESCH
T ss_pred EEecCccCcccCCch-hh---CCCEEEEccccccCCCCccccceeeecch
Confidence 999997655432222 12 899999999999987653 466665544
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=4.6e-15 Score=159.31 Aligned_cols=179 Identities=15% Similarity=0.106 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC
Q 043646 123 VHEASNYIKRCLGGGQADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL 202 (625)
Q Consensus 123 ~~~~~~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (625)
+.++++++++++|.+ .++++.||+.++...+...+. .++.+. ...... .++.+...|......+...|
T Consensus 76 ~~~le~~~a~l~G~~---~~~~~~sGt~A~~~a~~~~~~------~g~~~~-~~~~~~--~i~~~~~~~~~~~~~~~~~G 143 (467)
T d2v1pa1 76 YYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVLIK------KREQEK-GLDRSK--MVAFSNYFFDTTQGHSQING 143 (467)
T ss_dssp HHHHHHHHHHHTCCS---EEEEECSSTTTHHHHHHHHHH------HHHHHH-CCCTTT--CEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC---EEEECCCCHHHHHHHHHHHhh------ccceEe-cCCCCc--EEEEecccccccHHHHHHcC
Confidence 456889999999986 568888898886555444331 011111 122223 26666667777767778889
Q ss_pred CeEEEEecCC----------CCCCCHHHHHHHHHHhhhCCCCeEEEEecccCcccc-cc---CHHHHHHHHHHcCCEEEE
Q 043646 203 AEVVEIGLDD----------NGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGI-YS---DTRSIARLLHQYGGFACF 268 (625)
Q Consensus 203 ~~vv~v~~~~----------~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~-~~---~l~~I~~la~~~g~~viv 268 (625)
+.++.++.+. .+.+|+++|++++.+. ..+.+.++++...+|..|. +. ++++|.++|++||+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~ 222 (467)
T d2v1pa1 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEV-GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM 222 (467)
T ss_dssp CEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHH-CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CeeeecccccccccccccccccCCCHHHHHHHHhhc-CccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 9998887653 3579999999999853 1234678888888887654 33 578999999999999999
Q ss_pred eccCcCCCccc-----------cCCCC---CCCCCcEEEEcCCCCCCCCCCceEEEEeccc
Q 043646 269 DFAASGPYVKI-----------NLRSR---NIDGYDAIFLATHKFLGGPGTPGILLISKAL 315 (625)
Q Consensus 269 D~A~~~g~~~i-----------d~~~~---~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~ 315 (625)
|+|+.++.... .+... -...+|++++|.||.+++|.| |+++.+++.
T Consensus 223 D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~ 282 (467)
T d2v1pa1 223 DSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDS 282 (467)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGG
T ss_pred echhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchh
Confidence 99986542211 10000 012479999999999998876 787777665
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.50 E-value=3.7e-12 Score=134.48 Aligned_cols=202 Identities=11% Similarity=0.068 Sum_probs=124.6
Q ss_pred eEeccCCCC------CcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 043646 78 LTYADHTAS------GRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQADAIIFCGAGTTA 151 (625)
Q Consensus 78 ~~Yld~~~~------~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~~vift~sGtta 151 (625)
.-|||..+. |...+.|.+++.+++........ . ......+.+.+.+..+.. +.+.|+.+|+++
T Consensus 52 ~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~--~-------~~~~~~la~~~~~~~~~~--~~v~f~~sGseA 120 (427)
T d2gsaa_ 52 NRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA--P-------CALENVLAEMVNDAVPSI--EMVRFVNSGTEA 120 (427)
T ss_dssp CEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSS--C-------CHHHHHHHHHHHHHSTTC--SEEEEESSHHHH
T ss_pred CEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcccc--c-------hhHHHHHHHHHHhhCCcc--ccccccCCcHHH
Confidence 458886544 45678999999998865321111 1 112344566666666532 378899888888
Q ss_pred HHHHHHHHhcccccchhhhhhhhccCCCCceEEEEc-CCCCchhHHHH-------HHcC------------CeEEEEecC
Q 043646 152 AIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLG-PYEHHSNLLSW-------RQSL------------AEVVEIGLD 211 (625)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~-------~~~G------------~~vv~v~~~ 211 (625)
.-.++-.++. . .+.. .|+.- ...|.....++ ...+ .+...++
T Consensus 121 ~e~Alk~ar~--------------~-t~r~-~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-- 182 (427)
T d2gsaa_ 121 CMAVLRLMRA--------------Y-TGRD-KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-- 182 (427)
T ss_dssp HHHHHHHHHH--------------H-HCCC-EEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC--
T ss_pred HHHHHHHHHH--------------h-cCCC-eEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC--
Confidence 4444433331 1 1222 35544 44444332111 1111 1233333
Q ss_pred CCCCCCHHHHHHHHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCccc--cCCCCC
Q 043646 212 DNGLLDIEALRSQLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVKI--NLRSRN 285 (625)
Q Consensus 212 ~~~~ld~~~L~~~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~~i--d~~~~~ 285 (625)
.-|+++|++.+.+ ..++..+|++.......|.+.| +++|.++|++||+++|+|+++...-... ....++
T Consensus 183 ---~~~~~~le~~~~~--~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~g 257 (427)
T d2gsaa_ 183 ---YNDLEAVKALFAE--NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFG 257 (427)
T ss_dssp ---TTCHHHHHHHHTT--STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTT
T ss_pred ---cchHHHHHHHHHh--CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcC
Confidence 2489999999984 2346789999988888899888 9999999999999999999986421110 000111
Q ss_pred CCCCcEEEEcCCCCCCCCCCceEEEEecccc
Q 043646 286 IDGYDAIFLATHKFLGGPGTPGILLISKALY 316 (625)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~ 316 (625)
. .+|+++++ |.+|+...+|++++++++.
T Consensus 258 i-~PDi~~~g--K~lggG~p~~a~~~~~~i~ 285 (427)
T d2gsaa_ 258 V-TPDLTTLG--KIIGGGLPVGAYGGKREIM 285 (427)
T ss_dssp C-CCSEEEEC--GGGGTTSCCEEEEECHHHH
T ss_pred C-CHHHHhhh--hccCCCcceeeeeehHHHH
Confidence 1 57999988 7776655568888898883
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.1e-12 Score=134.97 Aligned_cols=349 Identities=13% Similarity=0.057 Sum_probs=198.7
Q ss_pred CccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCC
Q 043646 66 DVEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFY-GNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQ 138 (625)
Q Consensus 66 ~~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~-~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~ 138 (625)
+..+.+..|+ -|+|..+ .|-.++.|.+++.+++.... ..+.. . ..+...++.+++.+....+.
T Consensus 34 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~----~---~~~~~~~l~~~l~~~~~~~~ 103 (429)
T d1s0aa_ 34 GCELILSDGR---RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG----I---THAPAIELCRKLVAMTPQPL 103 (429)
T ss_dssp BTEEEETTSC---EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSS----E---ECHHHHHHHHHHHHHSCTTC
T ss_pred CCEEEECCCC---EEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCC----c---cchHHHHHHHHHHhhhccCc
Confidence 3445555453 4888533 34568999999998885421 11111 0 11234445667777776654
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-------------CeE
Q 043646 139 ADAIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-------------AEV 205 (625)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~v 205 (625)
+ .+.|+.+|+.++-..+-.++... .+ -..+.+.+|......|.....+....+ ...
T Consensus 104 ~-~v~f~~sGseA~e~A~k~ar~~~----~~------~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~ 172 (429)
T d1s0aa_ 104 E-CVFLADSGSVAVEVAMKMALQYW----QA------KGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN 172 (429)
T ss_dssp C-EEEEESSHHHHHHHHHHHHHHHH----HH------HTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC
T ss_pred c-eeeeccccccchhhhhhhhhhee----ec------ccccccEEEEecCCccccchhhhhhcCCccccccccCcccccc
Confidence 4 78898788777433332222100 00 012222245555556665554433221 122
Q ss_pred EEEecCC---CC---CCCHHHHHHHHHHhhhCCCCeEEEEeccc-CccccccC----HHHHHHHHHHcCCEEEEeccCcC
Q 043646 206 VEIGLDD---NG---LLDIEALRSQLELYKAAKRPMLGSFSACS-NVTGIYSD----TRSIARLLHQYGGFACFDFAASG 274 (625)
Q Consensus 206 v~v~~~~---~~---~ld~~~L~~~l~~~~~~~~~~lv~~~~~~-n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~ 274 (625)
...|... .. ..+++++++.+.+ ..+.+.+|+++.+. +..|.+.+ +++|.++|++||+++|+|+++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 250 (429)
T d1s0aa_ 173 LFAPAPQSRMDGEWDERDMVGFARLMAA--HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATG 250 (429)
T ss_dssp EEECCCCSBC-CCCCGGGGHHHHHHHHH--HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccccccccccccchhhhhhhhhhhhh--cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccc
Confidence 2333221 11 2345556555553 23567788888654 55556543 78999999999999999999773
Q ss_pred C-Cccc--cCCCCCCCCCcEEEEcCCCCCCCC-CCceEEEEeccccccCCCCCc----ccCCceEEeecccccccccccc
Q 043646 275 P-YVKI--NLRSRNIDGYDAIFLATHKFLGGP-GTPGILLISKALYQLGSSPPS----TCGGGTVNYVNAFDEKDTLYLE 346 (625)
Q Consensus 275 g-~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~l~v~~~~~~l~~~~p~----~~ggg~v~~~~~~~~~~~~~~~ 346 (625)
- -... ....++. .+|+++++ |.+++. ..+|++++++++.+ .+.+. +..++|
T Consensus 251 fGRtG~~~~~~~~~v-~PDi~~~g--K~l~gG~~p~~av~~~~~i~~--~~~~~~~~~~~~~~T---------------- 309 (429)
T d1s0aa_ 251 FGRTGKLFACEHAEI-APDILCLG--KALTGGTMTLSATLTTREVAE--TISNGEAGCFMHGPT---------------- 309 (429)
T ss_dssp TTTTSSSSGGGGGTC-CCSEEEEC--GGGGTSSSCCEEEEECHHHHH--HHHTSTTSSCSCCCT----------------
T ss_pred cccccccccccccee-cccccccc--cccccccccccchhhHHHHHh--ccCCCCCcceeecCC----------------
Confidence 2 2111 1111111 57999998 888443 34789999988732 11110 000111
Q ss_pred chhhhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCC---CcEE-EeCCCCCCCcceEEEEeccC
Q 043646 347 DIEERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPN---QNIQ-VLGNTSVKRQAILSFLVYST 422 (625)
Q Consensus 347 ~~~~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l---~gv~-v~~~~~~~~~~i~~f~~~~~ 422 (625)
..|.|-.+++..+.++.+.. +.+.++..++.+++.+.|.++ +.+. +-+ ++.++.+....+
T Consensus 310 ------~~gnp~~~aaa~a~L~~i~~-----~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg-----~Gl~~~~e~~~~ 373 (429)
T d1s0aa_ 310 ------FMGNPLACAAANASLAILES-----GDWQQQVADIEVQLREQLAPARDAEMVADVRV-----LGAIGVVETTHP 373 (429)
T ss_dssp ------TTTCHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-----ETTEEEEEESSC
T ss_pred ------CCCCcccchhhhcccccccc-----ccccchhhHHHHHHHHHHHHhccCCceEEEee-----cccEEEEEecCc
Confidence 12344444545566666522 345667777777777777554 3332 211 334555544322
Q ss_pred CCCCCccccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCC
Q 043646 423 TNSSPENMKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPY 502 (625)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~ 502 (625)
.....+.+.+.+ +|+.+++. .+.+|+++++
T Consensus 374 ---------------~~~~~~~~~~~~-~Gl~~~~~----------------------------------g~~i~~~Ppl 403 (429)
T d1s0aa_ 374 ---------------VNMAALQKFFVE-QGVWIRPF----------------------------------GKLIYLMPPY 403 (429)
T ss_dssp ---------------BCHHHHHHHHHH-TTEECCCB----------------------------------TTEEEECCCT
T ss_pred ---------------ccHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEeCCc
Confidence 135578788866 69988631 2679999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhh
Q 043646 503 YMSNEEFEFILAALEFIAAYGH 524 (625)
Q Consensus 503 ~~t~edid~ll~aL~~~~~~~~ 524 (625)
-.|++|+|+++++|++.+++..
T Consensus 404 ~it~~eid~~~~~l~~al~e~~ 425 (429)
T d1s0aa_ 404 IILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999887743
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.45 E-value=9.3e-12 Score=131.60 Aligned_cols=360 Identities=13% Similarity=0.008 Sum_probs=190.3
Q ss_pred ccccCCCCCCceEeccCCC------CCcchHHHHHHHHHhhCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 043646 67 VEFDYSFGKRRLTYADHTA------SGRSLRYIEDYIINNVLPFYGNTHTSDSYVGQRMTKMVHEASNYIKRCLGGGQAD 140 (625)
Q Consensus 67 ~~~~~p~g~~~~~Yld~~~------~~~~p~~v~ea~~~~l~~~~~n~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~ 140 (625)
..+.+..| .-|+|..+ .|-.++.|.+++.+++.... ..+.. .. .+...++.++|.+.....-+
T Consensus 33 ~~l~D~dG---~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~~--~~----~~~~~~la~~L~~~~~~~~~- 101 (431)
T d1zoda1 33 SFVYDADG---RAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD-HLFSE--ML----SRPVVDLATRLANITPPGLD- 101 (431)
T ss_dssp TEEECTTC---CEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCC-CCCTT--CC----CHHHHHHHHHHHHHSCTTCC-
T ss_pred CEEEECCC---CEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcc-ccccc--cc----cHHHHHHHHHHHHhCCcccc-
Confidence 33444444 35888643 45567899999999885431 11110 01 12234566777777754334
Q ss_pred cEEEeCChHHHHHHHHHHHhcccccchhhhhhhhccCCCCceEEEEcCCCCchhHHHHHHcC-----------CeEEEEe
Q 043646 141 AIIFCGAGTTAAIKRLQEVMGITVPSIMRDKLITSLRDEERWVVFLGPYEHHSNLLSWRQSL-----------AEVVEIG 209 (625)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-----------~~vv~v~ 209 (625)
.+.|+.||++|.-.++-.++. . .+.+.++......|......+...+ .....++
T Consensus 102 ~v~f~~sGseA~e~Alk~Ar~--------------~-t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (431)
T d1zoda1 102 RALLLSTGAESNEAAIRMAKL--------------V-TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIP 166 (431)
T ss_dssp EEEEESCHHHHHHHHHHHHHH--------------H-HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEEC
T ss_pred eeeecccccchHHHHHHHHHH--------------h-cCCcceeecccccccccchhhcccccccccccCCcccCceeee
Confidence 899998899884444433321 1 1222234444555555443332211 1233333
Q ss_pred cCCCC---------CCCHHHHHH---HHHHhhhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCc
Q 043646 210 LDDNG---------LLDIEALRS---QLELYKAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS 273 (625)
Q Consensus 210 ~~~~~---------~ld~~~L~~---~l~~~~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~ 273 (625)
..... ..+.+.++. .+.. ...+...+|++.......|.+.+ +++|.++|++||+++|+|+++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t 245 (431)
T d1zoda1 167 APFTYRPRFERNGAYDYLAELDYAFDLIDR-QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT 245 (431)
T ss_dssp CCCTTSCCCEETTEECHHHHHHHHHHHHHH-HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred eecccccccccccchhhhhhHHHHHHHHHH-hccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc
Confidence 22110 112333333 3322 22346789999988887788766 8999999999999999999977
Q ss_pred C-CCcccc--CCCCCCCCCcEEEEcCCCCCCCCCCceEEEEeccccccCCC-CCcccCCceEEeeccccccccccccchh
Q 043646 274 G-PYVKIN--LRSRNIDGYDAIFLATHKFLGGPGTPGILLISKALYQLGSS-PPSTCGGGTVNYVNAFDEKDTLYLEDIE 349 (625)
Q Consensus 274 ~-g~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (625)
. |-...- ....+. .+|+++++ |.+++...++.++++++... .. .+....+.|
T Consensus 246 G~gRtG~~~~~~~~gv-~PDi~~~g--K~l~gG~p~~av~~~~~~~~--~~~~~~~~~~~T------------------- 301 (431)
T d1zoda1 246 GVGRTGTMFACQRDGV-TPDILTLS--KTLGAGLPLAAIVTSAAIEE--RAHELGYLFYTT------------------- 301 (431)
T ss_dssp TTTTTSSSSTHHHHTC-CCSEEEEC--HHHHTTSSCEEEEECHHHHH--HHHHTTCCCCCT-------------------
T ss_pred cccccccccccccCCC-Ccchhccc--cccccccccceeeeeecchh--hhhcccccccCC-------------------
Confidence 4 322111 111111 57999998 88866555677777776621 11 000000111
Q ss_pred hhhcCCChhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhhCCCCcEEEeCCCCCCCcceEEEEeccCCCCCCcc
Q 043646 350 ERENGGTPQIVQMIRAALAFWVKEYIGYEVIKKQEDVYIESALGRILPNQNIQVLGNTSVKRQAILSFLVYSTTNSSPEN 429 (625)
Q Consensus 350 ~~~~~gt~~~~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~l~~~L~~l~gv~v~~~~~~~~~~i~~f~~~~~~~~~~~~ 429 (625)
..|.|..+++..+.++.+..+ .-.++..+....+.+.+.+.+.+.+-+.-+. ..+..+++.+..+....
T Consensus 302 ---~~g~pl~~aaa~a~l~~i~~~-~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vr----G~Glm~~ie~~~~~~~~--- 370 (431)
T d1zoda1 302 ---HVSDPLPAAVGLRVLDVVQRD-GLVARANVMGDRLRRGLLDLMERFDCIGDVR----GRGLLLGVEIVKDRRTK--- 370 (431)
T ss_dssp ---TTTCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHCTTEEEEE----EETTEEEEEEEEETTTT---
T ss_pred ---CCCCcchHHHHHHHHHHhhhh-hhhHHHHHHHHHHhhhhhhhhhcCCCeEEEe----ecceEEEEEEecCCccc---
Confidence 123444444445556655322 1133333333333333444444444332111 13345555443221000
Q ss_pred ccccCCCCCChHHHHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHH
Q 043646 430 MKIERNKPLHGPFVATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEF 509 (625)
Q Consensus 430 ~~~~~~~~l~~~~v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edi 509 (625)
....--...+.+.+.+ +|+..+.-.... .++.+|+++++.+|++|+
T Consensus 371 ----~~~~~~~~~i~~~~~~-~Gl~~~~~~~~~-----------------------------~~~~i~l~Ppl~it~~ei 416 (431)
T d1zoda1 371 ----EPADGLGAKITRECMN-LGLSMNIVQLPG-----------------------------MGGVFRIAPPLTVSEDEI 416 (431)
T ss_dssp ----EECTTHHHHHHHHHHH-TTEECCEECCTT-----------------------------SCCEEEECCCTTCCHHHH
T ss_pred ----CccHHHHHHHHHHHHH-hCcccCeeeecC-----------------------------CCCEEEEECCCCCCHHHH
Confidence 0000113456666655 687643111000 247899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043646 510 EFILAALEFIAAY 522 (625)
Q Consensus 510 d~ll~aL~~~~~~ 522 (625)
|+++++|++++++
T Consensus 417 d~~~~~l~~al~~ 429 (431)
T d1zoda1 417 DLGLSLLGQAIER 429 (431)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998876
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=3.6e-11 Score=127.94 Aligned_cols=214 Identities=15% Similarity=0.098 Sum_probs=128.5
Q ss_pred HHHHHHHHHHh-hhCCCCeEEEEecccCccccccC----HHHHHHHHHHcCCEEEEeccCcCCCc-c--ccCCCCCC-CC
Q 043646 218 IEALRSQLELY-KAAKRPMLGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYV-K--INLRSRNI-DG 288 (625)
Q Consensus 218 ~~~L~~~l~~~-~~~~~~~lv~~~~~~n~TG~~~~----l~~I~~la~~~g~~vivD~A~~~g~~-~--id~~~~~~-~~ 288 (625)
.+++++.+... ...+.+.+|++..+....|.+.+ +++|.++|++||+++|+|+++..... . ......+. ..
T Consensus 232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~ 311 (461)
T d1ohwa_ 232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDP 311 (461)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSC
T ss_pred HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccC
Confidence 45566655432 12346789999999888888755 78999999999999999999764221 1 11111111 14
Q ss_pred CcEEEEcCCCCCCCCCCceEEEEeccccccCCCCCcccCCceEEeeccccccccccccchhhhhcCCChhHHHHHHHHHH
Q 043646 289 YDAIFLATHKFLGGPGTPGILLISKALYQLGSSPPSTCGGGTVNYVNAFDEKDTLYLEDIEERENGGTPQIVQMIRAALA 368 (625)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G~l~v~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~aal~ 368 (625)
+|+++++ |.+++ |+......+ ....+...+ +| ..|.|..+++..+.++
T Consensus 312 PDiv~~g--K~l~~----g~~~~~~~~---~~~~~~~~~-~T----------------------~~g~p~~~aaa~a~l~ 359 (461)
T d1ohwa_ 312 ADVMTFS--KKMMT----GGFFHKEEF---RPNAPYRIF-NT----------------------WLGDPSKNLLLAEVIN 359 (461)
T ss_dssp CSEEEEC--GGGSS----EEEEECGGG---SCSSTTSSC-CS----------------------CSSCHHHHHHHHHHHH
T ss_pred chhhhhh--hcccc----ccccccccc---ccccccccc-cc----------------------cccccccchhhcccch
Confidence 7999887 87652 454444333 222121111 11 1244444444455566
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHhhCC----CCc-E-EEeCCCCCCCcceEEEEeccCCCCCCccccccCCCCCChHH
Q 043646 369 FWVKEYIGYEVIKKQEDVYIESALGRILP----NQN-I-QVLGNTSVKRQAILSFLVYSTTNSSPENMKIERNKPLHGPF 442 (625)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~l~~~L~~----l~g-v-~v~~~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (625)
.+.. +.+.++.+.+.+++.+.|.+ .|. + +|-+ ++.++.+.+.... ....
T Consensus 360 ~i~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG-----~Gl~~~ie~~~~~---------------~~~~ 414 (461)
T d1ohwa_ 360 IIKR-----EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-----RGTFCSFDTPDES---------------IRNK 414 (461)
T ss_dssp HHHH-----TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-----ETTEEEEECSSHH---------------HHHH
T ss_pred hhhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeee-----eeEEEEEEcCCHH---------------HHHH
Confidence 6532 23455555566666666544 332 2 2222 3345555543211 1346
Q ss_pred HHHHhhhhcCeeeecCCCCCchhhHhhhcCChhhHHHHHHHHHhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 043646 443 VATLFNDLFGIQARGGCACAGPYGHTLLAFDQTRSLEIRSAIQKGYLGVKPGWTRITFPYYMSNEEFEFILAALEFIAAY 522 (625)
Q Consensus 443 v~~~L~~~~gI~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~g~~~g~iRis~~~~~t~edid~ll~aL~~~~~~ 522 (625)
+++.+.+ +||.+++. .+..|||.+++..|++|+|.++++|++++.+
T Consensus 415 i~~~~~~-~Gll~~~~---------------------------------~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 415 LISIARN-KGVMLGGC---------------------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHHHHH-TTEECEEE---------------------------------TTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-CCeEEeeC---------------------------------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 7777765 69988631 1367999999999999999999999999876
|