Citrus Sinensis ID: 043659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP
cHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHccccccHHHHHcHHHHHHcccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHcHHHHHcccccEEEEEcccccccccccccccccccccc
YICLVGLLLVVNIATLarvdgagecgtsspddeamklspcatapqdekvpvsagcrrnvqrigqnpnCLCAVLlsdtaklsgvkpqvaitipkrcnitklpadyvcgpctip
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCatapqdekvpvSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVaitipkrcnitklpadyvcgpctip
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP
*ICLVGLLLVVNIATLARVDGA*******************************GCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCT**
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLS*****************RRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTI*
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query112
388506346120 unknown [Lotus japonicus] 1.0 0.933 0.596 1e-30
224101069119 predicted protein [Populus trichocarpa] 1.0 0.941 0.584 2e-30
297820134114 protease inhibitor/seed storage/lipid tr 0.964 0.947 0.589 2e-30
388508574120 unknown [Lotus japonicus] 1.0 0.933 0.587 4e-30
351723453120 uncharacterized protein LOC100305635 pre 0.973 0.908 0.607 7e-30
356520960118 PREDICTED: uncharacterized protein LOC10 0.973 0.923 0.598 2e-29
224109428119 predicted protein [Populus trichocarpa] 0.991 0.932 0.580 4e-29
388517063120 unknown [Lotus japonicus] 1.0 0.933 0.557 7e-29
351725707125 uncharacterized protein LOC100306273 pre 0.955 0.856 0.555 8e-29
255566542119 lipid binding protein, putative [Ricinus 0.991 0.932 0.580 1e-28
>gi|388506346|gb|AFK41239.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 85/114 (74%), Gaps = 2/114 (1%)

Query: 1   YICLVGLL-LVVNIATLARVDGAGECG-TSSPDDEAMKLSPCATAPQDEKVPVSAGCRRN 58
           +ICLVG + LVV+IA   RV+GAGECG  ++PD+EAMKL+PCATA QDE   VS  C   
Sbjct: 7   FICLVGFVVLVVSIAGFHRVEGAGECGRYTTPDNEAMKLAPCATAAQDENASVSQSCCAQ 66

Query: 59  VQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP 112
           V++  QNP CLCAVLLS+TAK+SG+ P++AITIPKRC+    P  Y CG  T+P
Sbjct: 67  VKKFSQNPGCLCAVLLSNTAKMSGIDPKIAITIPKRCSFANRPIGYKCGSYTLP 120

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101069|ref|XP_002312129.1| predicted protein [Populus trichocarpa] gi|222851949|gb|EEE89496.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297820134|ref|XP_002877950.1| protease inhibitor/seed storage/lipid transfer protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297323788|gb|EFH54209.1| protease inhibitor/seed storage/lipid transfer protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388508574|gb|AFK42353.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351723453|ref|NP_001238303.1| uncharacterized protein LOC100305635 precursor [Glycine max] gi|255626149|gb|ACU13419.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356520960|ref|XP_003529127.1| PREDICTED: uncharacterized protein LOC100810277 [Glycine max] Back     alignment and taxonomy information
>gi|224109428|ref|XP_002315191.1| predicted protein [Populus trichocarpa] gi|222864231|gb|EEF01362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388517063|gb|AFK46593.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|351725707|ref|NP_001236334.1| uncharacterized protein LOC100306273 precursor [Glycine max] gi|255628069|gb|ACU14379.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255566542|ref|XP_002524256.1| lipid binding protein, putative [Ricinus communis] gi|223536533|gb|EEF38180.1| lipid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query112
TAIR|locus:2084520114 AT3G53980 [Arabidopsis thalian 0.964 0.947 0.589 6e-32
TAIR|locus:2153619116 AT5G05960 [Arabidopsis thalian 0.937 0.905 0.566 2.2e-27
TAIR|locus:2065634115 AT2G37870 [Arabidopsis thalian 0.964 0.939 0.422 4.1e-17
TAIR|locus:2168474115 LTP3 "lipid transfer protein 3 0.758 0.739 0.294 0.00021
TAIR|locus:1006230669171 AT1G03103 "AT1G03103" [Arabido 0.714 0.467 0.292 0.00031
TAIR|locus:2083770125 AT3G52130 [Arabidopsis thalian 0.589 0.528 0.342 0.00045
TAIR|locus:2084520 AT3G53980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 66/112 (58%), Positives = 81/112 (72%)

Query:     1 YICLVGLLLVVNIATLARVDGAGECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQ 60
             ++C++GL+L+  I T+  VDGAGECG SSPD+EAMKL+PCA A QD    V  GC   ++
Sbjct:     7 FLCILGLILL--IGTV--VDGAGECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIK 62

Query:    61 RIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVCGPCTIP 112
             R  QNP CLCA+LLSDTAK SGV P+VA+TIPKRCN    P  Y CG  T+P
Sbjct:    63 RFSQNPKCLCAILLSDTAKASGVDPEVALTIPKRCNFANRPVGYKCGAYTLP 114
GO:0005576 "extracellular region" evidence=ISM
GO:0006869 "lipid transport" evidence=ISS
GO:0008289 "lipid binding" evidence=ISS
TAIR|locus:2153619 AT5G05960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065634 AT2G37870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168474 LTP3 "lipid transfer protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230669 AT1G03103 "AT1G03103" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083770 AT3G52130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query112
cd0001063 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibit 4e-04
>gnl|CDD|237980 cd00010, AAI_LTSS, AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins Back     alignment and domain information 
 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 37 LSPCATAPQDEKVPVSAGCRRNVQRIGQ-NPNCLCAVLLSDTAKLSGVK-PQVAITIPKR 94
          L+PC +          + C   ++ + + +P CLCA L    A L G+K    A+ +P  
Sbjct: 1  LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAA 60

Query: 95 CNI 97
          C +
Sbjct: 61 CGL 63

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges. Length = 63

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 112
cd0466073 nsLTP_like nsLTP_like: Non-specific lipid-transfer 99.66
PF1436896 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 99.63
cd0196089 nsLTP1 nsLTP1: Non-specific lipid-transfer protein 99.59
cd0195966 nsLTP2 nsLTP2: Non-specific lipid-transfer protein 99.55
cd0001063 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), 99.51
smart0049979 AAI Plant lipid transfer protein / seed storage pr 99.1
PF0023490 Tryp_alpha_amyl: Protease inhibitor/seed storage/L 98.84
PF1454785 Hydrophob_seed: Hydrophobic seed protein 96.65
cd0195885 HPS_like HPS_like: Hydrophobic Protein from Soybea 96.46
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3 Back     alignment and domain information 
Probab=99.66  E-value=3.8e-17  Score=103.73  Aligned_cols=66  Identities=26%  Similarity=0.522  Sum_probs=56.6

Q ss_pred             cCcccCccCCCCCC--CCCCHHHHHHHHhcCCCCCccccccccchhhccCCChHHHhhhhccCCCCCCCCCCCC
Q 043659           35 MKLSPCATAPQDEK--VPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKLPADYVC  106 (112)
Q Consensus        35 ~~L~pC~~~~~~~~--~~Ps~~CC~~vk~~~~~~~ClC~~l~~~~~~~~~vn~~~a~~LP~~Cgi~~~p~~~~C  106 (112)
                      ..|+||++|+++++  .+||+.||++||++  +..|+|.++.....  .+||+++|++||++||++ +|+ ++|
T Consensus         6 ~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--~~~C~C~~~~~~~~--~~i~~~~a~~Lp~~Cgv~-~p~-~~C   73 (73)
T cd04660           6 DLLAECQPYVTGPNPPPPPSRECCAALRRA--DLPCLCRYKTSLVL--QIIDPDKAVYLPAKCGLP-LPP-SSC   73 (73)
T ss_pred             HHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--CcCCEeeccCCCcc--cccCHHHHHHHHHHcCCC-CCC-CCC
Confidence            58899999999765  46999999999998  77899988765433  359999999999999999 888 887

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A Back     alignment and domain information
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes Back     alignment and domain information
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes Back     alignment and domain information
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins Back     alignment and domain information
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family Back     alignment and domain information
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ] Back     alignment and domain information
>PF14547 Hydrophob_seed: Hydrophobic seed protein Back     alignment and domain information
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query112
2rkn_A77 DIR1 protein, AT5G48485; LTP, defense signaling pr 99.74
2ljo_A93 Non-specific lipid-transfer protein 2; lipid trans 99.64
1afh_A93 Maize nonspecific lipid transfer protein; lipid-bi 99.59
1siy_A91 LTP 1, NS-LTP1, nonspecific lipid-transfer protein 99.59
1bwo_A90 NS-LTP1, nonspecific lipid-transfer protein; wheat 99.58
1l6h_A69 LTP2, non-specific lipid transfer protein; NSLTP2, 99.57
1n89_A67 Lipid transfer protein; lipid transport; HET: PGM; 99.57
1t12_A91 LTP 1, nonspecific lipid-transfer protein 1; cyste 99.56
2alg_A92 Non-specific lipid transfer protein; LTP, NS-LTP, 99.52
1hyp_A80 Hydrophobic protein from soybean; hydrophobic SEED 96.53
2lvf_A114 2S albumin; allergen, copper binding, hydrophobic 94.89
3ob4_A500 Conglutin, maltose ABC transporter periplasmic pro 94.32
1bea_A127 Bifunctional amylase/serine protease inhibitor; am 91.78
2ds2_B72 Sweet protein mabinlin-2 chain B; plant protein, S 91.29
1w2q_A127 Conglutin, ARA H 6; allergen, allergene; NMR {Arac 90.58
1psy_A125 2S albumin, RICC3; albumin SEED protein, SEED stor 90.55
1hss_A124 0.19 alpha-amylase inhibitor; cereal inhibitor, an 89.96
1b1u_A122 Protein (alpha-amylase/trypsin inhibitor RATI); bi 89.95
1pnb_B75 Napin BNIB; napin IA and IB, albumin SEED protein, 89.9
1s6d_A103 Albumin 8; all helix, folded LEAF, right-handed su 88.81
1sm7_A109 Recombinant IB pronapin; all alpha-helix, right-ha 81.9
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana} Back     alignment and structure
Probab=99.74  E-value=3.2e-19  Score=113.39  Aligned_cols=73  Identities=29%  Similarity=0.492  Sum_probs=63.0

Q ss_pred             cCCCCCCCccccccCcccCccCCCCC-CCCCCHHHHHHHHhcCCCCCccccccccchhhccCCChHHHhhhhccCCCCCC
Q 043659           22 AGECGTSSPDDEAMKLSPCATAPQDE-KVPVSAGCRRNVQRIGQNPNCLCAVLLSDTAKLSGVKPQVAITIPKRCNITKL  100 (112)
Q Consensus        22 ~~~C~~~~~~~~~~~L~pC~~~~~~~-~~~Ps~~CC~~vk~~~~~~~ClC~~l~~~~~~~~~vn~~~a~~LP~~Cgi~~~  100 (112)
                      ..+|+++.     .+|+||++|++++ ...||++||++||+.  |+.|+|.+++++..+.+|||+++|++||++||++ +
T Consensus         2 ~~~C~~~~-----~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--~~~ClC~~~~~~~~~~~gin~~~A~~LP~~Cgv~-~   73 (77)
T 2rkn_A            2 IDLCGMSQ-----DELNECKPAVSKENPTSPSQPCCTALQHA--DFACLCGYKNSPWLGSFGVDPELASALPKQCGLA-N   73 (77)
T ss_dssp             CCBTTBCH-----HHHHHHGGGGBSSSCCCCCHHHHHHHTTC--CHHHHHTTTTCHHHHHHTBCHHHHHHHHHHTTCS-C
T ss_pred             cchHHhHH-----HhHhhCHHHHcCCCCCCCCHHHHHHHHhc--CcCCcCcccCCcchhhcCcCHHHHHHHHHHcCCC-C
Confidence            45788766     5899999999973 468999999999986  7899999988766677799999999999999999 7


Q ss_pred             CC
Q 043659          101 PA  102 (112)
Q Consensus       101 p~  102 (112)
                      |+
T Consensus        74 p~   75 (77)
T 2rkn_A           74 AP   75 (77)
T ss_dssp             CC
T ss_pred             CC
Confidence            65
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris} Back     alignment and structure
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A* Back     alignment and structure
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var} Back     alignment and structure
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A* Back     alignment and structure
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1 Back     alignment and structure
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A* Back     alignment and structure
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum} Back     alignment and structure
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A* Back     alignment and structure
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Back     alignment and structure
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa} Back     alignment and structure
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli} Back     alignment and structure
>1bea_A Bifunctional amylase/serine protease inhibitor; amylase/protease bifunctional inhibitor; 1.95A {Zea mays} SCOP: a.52.1.2 PDB: 1bfa_A Back     alignment and structure
>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai} Back     alignment and structure
>1w2q_A Conglutin, ARA H 6; allergen, allergene; NMR {Arachis hypogaea} Back     alignment and structure
>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3 Back     alignment and structure
>1hss_A 0.19 alpha-amylase inhibitor; cereal inhibitor, animal amylase; 2.06A {Triticum aestivum} SCOP: a.52.1.2 Back     alignment and structure
>1b1u_A Protein (alpha-amylase/trypsin inhibitor RATI); bifunctional, hydrolase inhibitor; 2.20A {Eleusine coracana} SCOP: a.52.1.2 PDB: 1bip_A 1tmq_B Back     alignment and structure
>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3 Back     alignment and structure
>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3 Back     alignment and structure
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query112
d1fk5a_93 Plant non-specific lipid-transfer protein (ns-LTP, 99.63
d1mida_91 Plant non-specific lipid-transfer protein (ns-LTP, 99.59
d1tuka167 Non-specific lipid-transfer protein homologue (ns- 99.36
d1l6ha_69 Non-specific lipid-transfer protein homologue (ns- 99.33
d1s6da_103 Methionine-rich 2S protein (albumin 8) {Common sun 95.46
d1hypa_75 Soybean hydrophobic protein {Soybean (Glycine max) 95.42
g1pnb.1106 Napin BNIb {Rape (Brassica napus) [TaxId: 3708]} 94.49
d1psya_125 2S albumin RicC3 {Castor bean (Ricinus communis) [ 92.91
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.63  E-value=2.1e-18  Score=111.83  Aligned_cols=80  Identities=24%  Similarity=0.535  Sum_probs=63.8

Q ss_pred             CCCCCCCccccccCcccCccCCCCCCCCCCHHHHHHHHhcCC------CCCccccccccchhhccCCChHHHhhhhccCC
Q 043659           23 GECGTSSPDDEAMKLSPCATAPQDEKVPVSAGCRRNVQRIGQ------NPNCLCAVLLSDTAKLSGVKPQVAITIPKRCN   96 (112)
Q Consensus        23 ~~C~~~~~~~~~~~L~pC~~~~~~~~~~Ps~~CC~~vk~~~~------~~~ClC~~l~~~~~~~~~vn~~~a~~LP~~Cg   96 (112)
                      .+|+++.     ..|+||++|+++++..|++.||++++++++      |+.|+|..+++.....++||.++|.+||++||
T Consensus         2 i~C~~v~-----~~l~pCl~Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~   76 (93)
T d1fk5a_           2 ISCGQVA-----SAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCG   76 (93)
T ss_dssp             CCHHHHH-----HHHGGGHHHHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTT
T ss_pred             CCHHHHH-----HHhhhhHHHHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcC
Confidence            4677655     599999999998877899999999999862      45677777876544456899999999999999


Q ss_pred             CCC-C--CCCCCCC
Q 043659           97 ITK-L--PADYVCG  107 (112)
Q Consensus        97 i~~-~--p~~~~C~  107 (112)
                      +++ |  .+.++|+
T Consensus        77 v~l~~pis~~~dCs   90 (93)
T d1fk5a_          77 VSIPYTISTSTDCS   90 (93)
T ss_dssp             CCCSSCCSTTCCGG
T ss_pred             CCCCCCCCCCCCCC
Confidence            985 3  3566775
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]} Back     information, alignment and structure
>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]} Back     information, alignment and structure
>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure