Citrus Sinensis ID: 043674

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-
MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQSANRTIATVFPEQVQFAMDAEDEENQGVSSPSNKAAFKPNANIPNVPAIPKKDFMTPFLRMAKKGLKGNSSSAKAAAAAVSLKSGLNKEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQSGKIEEDVENAGLFPEVKAISDAKNEKDDNILTSGAEKEEEENDTVKAQREDNDSGPSDKPDEKKFMSETASVNLDTEPDEPGIEEGEETPNWRMLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLGTVSHTSLHETMDTHTSLTESHQEQEQEESHESITQTTATPVSHFSFLGSSQQPAPSSSEHIYDYRERIDLKKYPKREQSKVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARLKDKKKQEGSAKQRYTKSDARPIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVSRVANASASASAKAEDAELSNYQAAKFQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEQLRHHPPMRSSSTRARIPLHSFLFGVKLKKQGQKQKPSLFSCMSPALQRQDSDHAPARCPQ
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHEEcccccccccccccccHHHcccccccccccccccccccc
MEEKVGEMLKIIDDDGDSFAQRAEMYyrkrpeliNFVEDSYRSYRALAERYDHLSKELQSANRTIATVFPEQVQFAMdaedeenqgvsspsnkaafkpnanipnvpaipkkdfmtpFLRMAKKGLKGNSSSAKAAAAAVSLKSGLNKEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNlqdefgigtviddneARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIvnqtdereqeqpweenenkttagselkadlapqgksdvelsskkiedqvavdsNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLegekesliadsdatssADYLSEKlqsgkieedvenaglfpevkaisdaknekddniltsgaekeeeendtvkaqredndsgpsdkpdekkfMSETasvnldtepdepgieegeetpnwrmlSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLgtvshtslhetmdthtslteshqeqeqeeshesitqttatpvshfsflgssqqpapsssehiydyreridlkkypkreqskvnvkHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARLKDKkkqegsakqrytksdarpIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVSRVANASASASAKAEDAELSNYQAAKFQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEqlrhhppmrssstrariplhsfLFGVklkkqgqkqkpslfscmspalqrqdsdhaparcpq
MEEKVGEMLkiidddgdsfAQRAEMyyrkrpelinfVEDSYRSYRALAERYDHLSKELQSANRTIATVFPEQVQFAMDAEDEENQGVsspsnkaafkpnanipnvpaipkkDFMTPFLRMAKKGLKGNSSSAKAAAAAVSLKSGLNKEEALEEIDKLqkgilglqtekefakssyERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVnqtdereqeqpweenenkttagselkadlapqgksdVELSSKKIedqvavdsneSLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHisrlegekesliadsdatsSADYLSEKLQSGKIEEDVENAGLFpevkaisdaknekddniltsgaekeeeendtvkaqredndsgpsdkpdekkfmsetasvnldtepdepgieegeetpnwrmLSSGLEDREKILLEEytsvlhnytdvrrklsvmeKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLGTVSHTSLHETMDTHTSLTESHQEQEQEESHESITQTTATPVSHFSFLGssqqpapsssehiYDYRERIdlkkypkreqskvnvkhvkihctispieekIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARlkdkkkqegsakqrytksdarpiyKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVSRVANASASASAKAEDAELSNYQAAKFQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKldeqlrhhppmrssstrariPLHSFLFGVKLKKQGQKQKPSLFSCMSpalqrqdsdhaparcpq
MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQSANRTIATVFPEQVQFAMDAEDEENQGVSSPSNKAAFKpnanipnvpaipKKDFMTPFLRMakkglkgnsssakaaaaavslksglNKEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTlsklqekqeqsleeAKTEQQRIIEAHEKFIKLRNRFIVNQTDereqeqpweenenKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQSGKIEEDVENAGLFPEVKAISDAKNEKDDNILTSGAEKEEEENDTVKAQREDNDSGPSDKPDEKKFMSETASVNLdtepdepgieegeetPNWRMLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLGTVSHTSLHETMDTHtslteshqeqeqeeshesitqttATPVSHFSFLGSSQQPAPSSSEHIYDYRERIDLKKYPKREQSKVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARLKDKKKQEGSAKQRYTKSDARPIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQeevsrvanasasasakaedaeLSNYQAAKFQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEQLRHHPPMRSSSTRARIPLHSFLFGVklkkqgqkqkPSLFSCMSPALQRQDSDHAPARCPQ
******************FAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQSANRTIATVFPE*************************************************************************************LQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSC************************IIEAHEKFIKLRNRFIV*******************************************************LAVTQLVEKIDELVDKVVNLESAV********************************************************************************************************************************************************EKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLG*************************************************************YDYRERIDLK********KVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTV******************************PIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQ********************************************ADELHAGLDCVKQLRVEVEKTL*********************IPLHSFLFGVK**********************************
***K**E******************************ED*************************************************************************************************************************ILGLQT*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FLFGVKLKKQGQKQKPSLFSCMSPAL**************
MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQSANRTIATVFPEQVQFAMDA*************KAAFKPNANIPNVPAIPKKDFMTPFLRMAKKG********************LNKEEALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLS*****************QRIIEAHEKFIKLRNRFIVNQT******************GSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQSGKIEEDVENAGLFPEVKAISDAKNEKDDNILTSG*****************************KFMSETASVNLDTEPDEPGIEEGEETPNWRMLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLGTVSHTSLH*****************************ATPVSHFSF************EHIYDYRERIDLKKYPKREQSKVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARL**************TKSDARPIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVS*****************LSNYQAAKFQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEQLRHHPPMRSSSTRARIPLHSFLFGVKL********PSLFSCMS*****************
MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQSANRTIATVFPEQVQ**************************************************************************EALEEIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEKQEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVN********Q**********AGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTLRSETDQLEGHISRLEGEKESLIADSDATSSADYLSEKLQS******************************************************************************************NWRMLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQKLGT******************************************************************************KVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQDLKAELARLKDKKKQ******RYTKSDARPIYKHLREIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVSRVANASASAS**AEDAELSNYQAAKFQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEQLR************RIPLHSFLFGVKLK*********LF*C*SPA***************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSxxxxxxxxxxxxxxxxxxxxxIATVFPEQVQFAMDAEDEENQGVSSPSNKAAFKPNANIPNVPAIPKKDFMTPFLRMAKKGLKGNSSSAKAAAAAVSLKSGLNxxxxxxxxxxxxxxxxxxxxxKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLAxxxxxxxxxxxxxxxxxxxxxVSSQTALxxxxxxxxxxxxxxxxxxxxxKESLIADSDATSSADYLSEKLQSGKIEEDVENAGLFPEVKAISDAKNEKDDNILTSGAEKEEEENDTVKAQREDNDSGPSDKPDEKKFMSETASVNLDTEPDEPGIEEGEETPNWRMLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQxxxxxxxxxxxxxxxxxxxxxLGTVSHTSLHETMDTHTSLTESHQEQEQEESHESITQTTATPVSHFSFLGSSQQPAPSSSEHIYDYRERIDLKKYPKREQSKVNVKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQxxxxxxxxxxxxxxxxxxxxxxxxxxxxKQRYTKSDARPIYKHxxxxxxxxxxxxxxxxxxxxxVQDRYTSLCNIQEEVSRVANASASASAKAEDAELSNYQxxxxxxxxxxxxxxxxxxxxxLHAGxxxxxxxxxxxxxxxxxxxxxxxxHPPMRSSSTRARIPLHSFLFGVKLKKQGQKQKPSLFSCMSPALQRQDSDHAPARCPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query891
359492493947 PREDICTED: uncharacterized protein LOC10 0.961 0.904 0.495 0.0
12321838 1195 hypothetical protein [Arabidopsis thalia 0.945 0.704 0.485 0.0
15217905 1246 kinase interacting family protein [Arabi 0.941 0.673 0.482 0.0
255545974929 Restin, putative [Ricinus communis] gi|2 0.940 0.902 0.506 0.0
297837655 1287 EMB1674 [Arabidopsis lyrata subsp. lyrat 0.949 0.657 0.474 0.0
147772118 1093 hypothetical protein VITISV_010189 [Viti 0.939 0.765 0.463 0.0
356551771968 PREDICTED: uncharacterized protein LOC10 0.949 0.873 0.470 0.0
356498852974 PREDICTED: uncharacterized protein LOC10 0.966 0.883 0.474 0.0
224063329909 predicted protein [Populus trichocarpa] 0.898 0.881 0.486 0.0
357490029986 hypothetical protein MTR_5g066340 [Medic 0.953 0.862 0.451 0.0
>gi|359492493|ref|XP_002283805.2| PREDICTED: uncharacterized protein LOC100267818 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/948 (49%), Positives = 626/948 (66%), Gaps = 91/948 (9%)

Query: 1   MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQS 60
           +EEKV  MLKIIDDDGDSFAQRAEMYYRKRPELIN VE+ +R+YRA+AERYDHLS+ELQ 
Sbjct: 33  VEEKVQFMLKIIDDDGDSFAQRAEMYYRKRPELINLVEEYFRAYRAIAERYDHLSRELQH 92

Query: 61  ANRTIATVFPEQVQFAMDAEDE---ENQGVSSPSNKAAFKPNANIPNVPAIPKKDFMTPF 117
           ANRTIATV+PE+VQFAMD E+E   +  G + P    +  P + IP +P IPKKDF+ P 
Sbjct: 93  ANRTIATVYPEKVQFAMDDEEENVPKGSGDTLPKALPSL-PKSTIPKIPNIPKKDFLVPT 151

Query: 118 LRMAK-KGLKGNSSSAKAAAAAVSLKSGLNKEEALEEIDKLQKGILGLQTEKEFAKSSYE 176
             ++K K LK   SS  AA       SGL+K EAL+EIDK+QK IL LQTEKEF KSSYE
Sbjct: 152 PAISKRKQLKKTISSIIAATC-----SGLSKTEALDEIDKIQKEILMLQTEKEFVKSSYE 206

Query: 177 RGYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTLSKLQEK 236
           RG  +YWEIE QITEMQ++V +LQDEFGIGTVI+D+EAR+L++ TA+KSCQ TL++LQEK
Sbjct: 207 RGAARYWEIESQITEMQSRVSDLQDEFGIGTVIEDDEARSLMSTTALKSCQGTLAQLQEK 266

Query: 237 QEQSLEEAKTEQQRIIEAHEKFIKLRNRFIVNQTDEREQEQPWEENENKTTAGSELKADL 296
           QE+  EEA+ E+Q++ E  EK   L+++F+ NQT     +QP + +++  T   +   + 
Sbjct: 267 QERVAEEARVERQKLKETREKLQALKHQFLPNQT-----QQP-QHSQDHETLSHQFLPNQ 320

Query: 297 APQGKSDVELSSKKIEDQVAVDSNESLAVTQLVEKIDELVDKVVNLESAVSSQTALVKTL 356
                 D+EL  +KI++Q+ ++S  ++    + E+IDELV+KV+ LE+AVSSQTALV+ L
Sbjct: 321 MEDVDMDLELLREKIKEQLELNSKTTVTAPDVAERIDELVEKVITLEAAVSSQTALVRRL 380

Query: 357 RSETDQLEGHISRLEGEKESLIADSD---------------------------------- 382
           R ET++L+  +  LE  KE+LI DSD                                  
Sbjct: 381 RLETNELQTQVRTLEENKETLIEDSDKMSTKLIELEEELSRVQSLNRSVEDQNKHLQTHF 440

Query: 383 --ATSSADYLSEKLQSGKIEEDVENAGLFPEVKAISDAKNEKD----DNILTSGAEKEEE 436
             A+ + D+LSEKLQ  K++ + ++   F E +A+ D   EK+    +++L  G      
Sbjct: 441 TEASYALDHLSEKLQGVKLDMEAKDMTWFQEERAVLDVLTEKEFEEHEDLLPQG------ 494

Query: 437 ENDTVKAQREDNDSGPSDK-PDEKKFMSETASVNLDTEPDEPGIEEGEETPNWRMLS-SG 494
               +    E ++ G  D+ PD  K +      N D E  + G+EEG++ PNWR L  +G
Sbjct: 495 NGSALSEDMETHEEGKKDENPDYSK-LGHPVDSNPDIEDQDLGMEEGDQ-PNWRQLFING 552

Query: 495 LEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHA 554
           LE REK LL+EYTS+L +Y +V++KL+  EKKNRD F E ALQIREL+NA A +D+EI +
Sbjct: 553 LEHREKALLDEYTSILRSYKEVKKKLTEAEKKNRDSFFESALQIRELKNANALKDKEIRS 612

Query: 555 LRQKLGTVSHTSLHETMDTHTSLTESHQEQEQEESHESITQTTATPVSHFSFLGSSQQPA 614
           LRQ +     T+  E  DT  SLTE    Q Q E+H SI++  ++  S    L   QQ  
Sbjct: 613 LRQNIS--PQTNPGENWDT--SLTEDKPSQ-QGEAHASISREASSKFSKIPSLNPEQQSV 667

Query: 615 PSS--SEHIYDYRERI---DLKKYP-KREQSKVNVKHVKIHCTISPIEEKIRADIDELLE 668
             S  ++ I    E      +KK P K EQ ++    V     +   EEKIRADID++LE
Sbjct: 668 TGSLDNQSIQGKEESTASESMKKSPTKSEQGEIKEIPVDESLAVETTEEKIRADIDDILE 727

Query: 669 ENLEFWLRFSTSVHQIQKYQSTVQDLKAELARLKDKKKQEGSAKQRYTKSDARPIYKHLR 728
           ENLEFWLRFSTS HQIQK+Q+++QDL+AEL +LK+ KK EG  KQ+ TKSDARPIY H+R
Sbjct: 728 ENLEFWLRFSTSYHQIQKFQTSIQDLQAELLKLKEDKKNEGGTKQQSTKSDARPIYTHMR 787

Query: 729 EIQTELTLWLENNEVLKDEVQDRYTSLCNIQEEVSRVANASASASAKAEDAELSNYQAAK 788
           EIQTELTLWLE+N +LK+E+Q R++SLCN+QEE+SR+ +A ++    A++AELS YQAAK
Sbjct: 788 EIQTELTLWLEHNALLKEELQGRFSSLCNLQEEISRILDADSN----AQEAELSYYQAAK 843

Query: 789 FQGEIMNMKQENKKIADELHAGLDCVKQLRVEVEKTLAKLDEQL-----RHHPP-MRSSS 842
           FQGE++NMKQENKK+ +EL  GLD V+ L++EVE+TL++LDE       + HP   ++S 
Sbjct: 844 FQGELLNMKQENKKVKEELQKGLDRVRALQLEVERTLSQLDEDFEISKSKSHPSNWKNSV 903

Query: 843 TRARIPLHSFLFGVKLKKQGQKQKPSLFSCMSPALQRQDSDHAPARCP 890
            R RIPL SFLFGVKLK    KQKPS F+CMSP LQ+Q SD      P
Sbjct: 904 NRTRIPLRSFLFGVKLK----KQKPSFFACMSPTLQKQYSDLTAGLPP 947

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|12321838|gb|AAG50957.1|AC073943_7 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15217905|ref|NP_176117.1| kinase interacting family protein [Arabidopsis thaliana] gi|12321382|gb|AAG50760.1|AC079131_5 hypothetical protein [Arabidopsis thaliana] gi|332195393|gb|AEE33514.1| kinase interacting family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255545974|ref|XP_002514047.1| Restin, putative [Ricinus communis] gi|223547133|gb|EEF48630.1| Restin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297837655|ref|XP_002886709.1| EMB1674 [Arabidopsis lyrata subsp. lyrata] gi|297332550|gb|EFH62968.1| EMB1674 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147772118|emb|CAN60244.1| hypothetical protein VITISV_010189 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551771|ref|XP_003544247.1| PREDICTED: uncharacterized protein LOC100784970 [Glycine max] Back     alignment and taxonomy information
>gi|356498852|ref|XP_003518262.1| PREDICTED: uncharacterized protein LOC100818521 [Glycine max] Back     alignment and taxonomy information
>gi|224063329|ref|XP_002301099.1| predicted protein [Populus trichocarpa] gi|222842825|gb|EEE80372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357490029|ref|XP_003615302.1| hypothetical protein MTR_5g066340 [Medicago truncatula] gi|355516637|gb|AES98260.1| hypothetical protein MTR_5g066340 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query891
TAIR|locus:2024271928 NET2B "AT1G09720" [Arabidopsis 0.612 0.588 0.391 2e-147
TAIR|locus:2041203947 NET2D "AT2G22560" [Arabidopsis 0.248 0.233 0.472 5e-123
TAIR|locus:2142554848 NET2C "AT5G10500" [Arabidopsis 0.499 0.524 0.338 5.4e-88
TAIR|locus:20153021246 EMB1674 "AT1G58210" [Arabidops 0.517 0.369 0.392 2e-77
TAIR|locus:2007569 1733 NET1D "AT1G03080" [Arabidopsis 0.080 0.041 0.583 3.1e-23
TAIR|locus:2130210 1710 NET1B "Networked 1B" [Arabidop 0.103 0.053 0.5 4.8e-22
TAIR|locus:2132348 1111 NET1C "AT4G02710" [Arabidopsis 0.094 0.075 0.523 3.7e-20
TAIR|locus:2020843269 NET3A "AT1G03470" [Arabidopsis 0.060 0.200 0.685 1.8e-15
TAIR|locus:2043363225 NET3C "AT2G47920" [Arabidopsis 0.078 0.311 0.527 2.4e-15
TAIR|locus:2064387517 NET4B "AT2G30500" [Arabidopsis 0.070 0.121 0.609 1.4e-14
TAIR|locus:2024271 NET2B "AT1G09720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 898 (321.2 bits), Expect = 2.0e-147, Sum P(2) = 2.0e-147
 Identities = 228/583 (39%), Positives = 322/583 (55%)

Query:     1 MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYDHLSKELQS 60
             MEEKV   LKIID DGDSFA+RAEMYYRKRPE++NFVE+++RSYRALAERYDHLS ELQS
Sbjct:    33 MEEKVKYTLKIIDGDGDSFAKRAEMYYRKRPEIVNFVEEAFRSYRALAERYDHLSTELQS 92

Query:    61 ANRTIATVFPEQVQFAM---DAEDEENQGVSSPSNKAAFKXXXXXXXXXXXXKKDFMTPF 117
             AN  IAT FPE V F +   D +D+++     P +                 KK+F +  
Sbjct:    93 ANHMIATAFPEHVPFPLVDDDDDDDDDNPKKPPKHLHLIPSGTNIPQVPEVPKKEFKSQS 152

Query:   118 LRMXXXXXXXXXXXXXXXXXXXXXXXXXNKEEALEEIDKLQKGILGLQTEKEFAKSSYER 177
             L +                         ++EEALEEIDK+ KGIL LQTEKEF +SSYE+
Sbjct:   153 LMVLSRKEPGVLQSSETSSALVSSGL--SREEALEEIDKIHKGILVLQTEKEFVRSSYEQ 210

Query:   178 GYEKYWEIEDQITEMQAKVCNLQDEFGIGTVIDDNEARTLIAATAVKSCQDTXXXXXXXX 237
              Y++YW +E+++ EMQ +VC+LQDEFG+G  I+D EARTL+A  A+ SC++T        
Sbjct:   211 SYDRYWNLENEVEEMQKRVCSLQDEFGVGGEIEDGEARTLVATAALSSCKETIAKLEETQ 270

Query:   238 XXXXXXAKTEQQRIIEAHEKFIKLRNRFIVNQTDXXXXXXXXXXXXXKTTAGSELKADLA 297
                   A  E++RI  A E+   L+ +F +   +             ++   S  + DL 
Sbjct:   271 KRFSEDAGIEKERIDTATERCEALKKKFEIKVEEQAKKAFHGQESSYESVKESR-QIDLN 329

Query:   298 PQGKSDVELSSK---KIEDQVAVDSNESLAVTQLVEKI----DELVDKVVNLES----AV 346
              +  S+V+ + K    +E  V++++  +L+ T L++ +    +EL D + ++E      V
Sbjct:   330 -ENLSNVDFAEKIDELVEKVVSLETT-ALSHTALLKTLRSETNELQDHIRDVEKDKACLV 387

Query:   347 SSQTALVK---TLRSETDQLEGHISRLEGEKESLIAD-SDATSSADYLSEKLQSGKIEED 402
             S    + K    L  E  +++    R+E + ++L    ++A S+A  LS KLQ  K++ED
Sbjct:   388 SDSMDMKKRITVLEDELRKVKNLFQRVEDQNKNLHKHLTEANSTAKDLSGKLQEVKMDED 447

Query:   403 VENAGLFPEVKAISDAKNEKDDNILTSGAEKEEEE--NDTVKAQREDNDSGPSDKPDEKK 460
             VE  GL PE     D   E  D+I      K  EE     V  Q  D +S   +K + + 
Sbjct:   448 VEGDGLNPEDIQEEDTV-EDSDSISNEREIKNAEEIKEAMVIKQSRDQESMQEEKSETRD 506

Query:   461 F---MSETASVNLXXXXXXXXXXXXXXXPNWRML--SSGLEDREKILLEEYTSVLHNYTD 515
                 +SET S                   NWR L  + G+EDREK+LL+EY+SVL +Y +
Sbjct:   507 SCGGLSETESTCFGTEAEDEERR------NWRQLLPADGMEDREKVLLDEYSSVLRDYRE 560

Query:   516 VRRKLSVMEKKNRDRFIELALQIRELENAVAFRDEEIHALRQK 558
             V+RKLS +EKKNRD F ELALQ+REL+NAV+  D + H L QK
Sbjct:   561 VKRKLSEVEKKNRDGFFELALQLRELKNAVSCEDVDFHFLHQK 603
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2041203 NET2D "AT2G22560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142554 NET2C "AT5G10500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015302 EMB1674 "AT1G58210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007569 NET1D "AT1G03080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130210 NET1B "Networked 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132348 NET1C "AT4G02710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020843 NET3A "AT1G03470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043363 NET3C "AT2G47920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064387 NET4B "AT2G30500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query891
pfam0776574 pfam07765, KIP1, KIP1-like protein 4e-25
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
>gnl|CDD|116379 pfam07765, KIP1, KIP1-like protein Back     alignment and domain information 
 Score = 99.0 bits (247), Expect = 4e-25
 Identities = 38/52 (73%), Positives = 46/52 (88%)

Query: 1  MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYD 52
          M+ KV EMLK+I++D DSFA+RAEMYY+KRPELI  VE+ YR+YRALAERYD
Sbjct: 23 MDSKVKEMLKLIEEDADSFAKRAEMYYKKRPELIALVEEFYRAYRALAERYD 74

This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerise in vivo. Length = 74
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 891
PF0776574 KIP1: KIP1-like protein; InterPro: IPR011684 This 99.91
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.43
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.02
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.95
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.94
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 96.93
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.93
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.88
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 96.8
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 96.72
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.67
PHA02562562 46 endonuclease subunit; Provisional 96.59
PRK03918880 chromosome segregation protein; Provisional 96.51
TIGR006061311 rad50 rad50. This family is based on the phylogeno 96.43
PRK02224880 chromosome segregation protein; Provisional 96.34
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.29
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 96.18
PRK11637428 AmiB activator; Provisional 96.0
PF10174775 Cast: RIM-binding protein of the cytomatrix active 95.74
PRK02224880 chromosome segregation protein; Provisional 95.68
PRK03918880 chromosome segregation protein; Provisional 95.63
COG11961163 Smc Chromosome segregation ATPases [Cell division 95.59
KOG09331174 consensus Structural maintenance of chromosome pro 95.42
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.28
PF05701522 WEMBL: Weak chloroplast movement under blue light; 94.77
PRK04863 1486 mukB cell division protein MukB; Provisional 94.68
KOG09961293 consensus Structural maintenance of chromosome pro 94.66
KOG09961293 consensus Structural maintenance of chromosome pro 94.61
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 94.39
PF00038312 Filament: Intermediate filament protein; InterPro: 94.38
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.23
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.17
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 93.87
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 93.49
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.39
PRK04778569 septation ring formation regulator EzrA; Provision 93.2
PLN03229762 acetyl-coenzyme A carboxylase carboxyl transferase 93.18
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 93.18
PF10174775 Cast: RIM-binding protein of the cytomatrix active 92.88
PRK11637428 AmiB activator; Provisional 92.86
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 92.84
PRK01156895 chromosome segregation protein; Provisional 92.6
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 92.3
KOG0971 1243 consensus Microtubule-associated protein dynactin 92.14
PF00038312 Filament: Intermediate filament protein; InterPro: 91.94
KOG0963629 consensus Transcription factor/CCAAT displacement 91.89
PF09730717 BicD: Microtubule-associated protein Bicaudal-D; I 91.83
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.64
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.47
PF13851201 GAS: Growth-arrest specific micro-tubule binding 91.2
PRK04778569 septation ring formation regulator EzrA; Provision 91.19
KOG09331174 consensus Structural maintenance of chromosome pro 91.05
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 91.05
PF05701522 WEMBL: Weak chloroplast movement under blue light; 90.99
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 90.44
PF05911769 DUF869: Plant protein of unknown function (DUF869) 90.34
KOG1003205 consensus Actin filament-coating protein tropomyos 90.11
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.04
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 89.9
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 89.72
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 89.62
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 89.47
PF122521439 SidE: Dot/Icm substrate protein; InterPro: IPR0210 89.39
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 89.31
COG3883265 Uncharacterized protein conserved in bacteria [Fun 88.96
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 88.96
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 88.9
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 88.79
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 88.73
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 88.62
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 88.49
PRK04863 1486 mukB cell division protein MukB; Provisional 88.49
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 88.38
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 88.28
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 88.18
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.17
PRK01156895 chromosome segregation protein; Provisional 87.63
KOG0980980 consensus Actin-binding protein SLA2/Huntingtin-in 87.1
KOG0971 1243 consensus Microtubule-associated protein dynactin 86.78
KOG0963629 consensus Transcription factor/CCAAT displacement 86.67
KOG0977546 consensus Nuclear envelope protein lamin, intermed 86.61
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 86.43
KOG0977546 consensus Nuclear envelope protein lamin, intermed 85.84
PRK09039343 hypothetical protein; Validated 85.84
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 85.73
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 84.96
PF14662193 CCDC155: Coiled-coil region of CCDC155 84.79
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 84.46
PRK09039343 hypothetical protein; Validated 84.4
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 84.39
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 84.04
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 83.68
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 83.12
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 83.1
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 83.04
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 81.72
KOG0018 1141 consensus Structural maintenance of chromosome pro 81.52
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 81.43
KOG0979 1072 consensus Structural maintenance of chromosome pro 81.42
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 81.41
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 81.05
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 80.92
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 80.77
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 80.06
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants Back     alignment and domain information 
Probab=99.91  E-value=1.6e-25  Score=195.76  Aligned_cols=52  Identities=75%  Similarity=1.246  Sum_probs=51.4

Q ss_pred             CcHHHHHHHHhhhccCChHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhh
Q 043674            1 MEEKVGEMLKIIDDDGDSFAQRAEMYYRKRPELINFVEDSYRSYRALAERYD   52 (891)
Q Consensus         1 md~kvk~mlklieed~dSfa~rAemyy~kRpeLi~~vee~yr~Yr~LAeryd   52 (891)
                      ||+|||+||+||++||||||+||||||+|||+||++||||||+||+||||||
T Consensus        23 md~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD   74 (74)
T PF07765_consen   23 MDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD   74 (74)
T ss_pred             HHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999999999999999999999999998

They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query891
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 79.9 bits (196), Expect = 2e-15
 Identities = 103/710 (14%), Positives = 205/710 (28%), Gaps = 217/710 (30%)

Query: 52  DHLSKELQSANRTIATVFPEQVQFAMDAEDEENQGVSSPSNKAAFKPNANIPNVPAIPKK 111
           D  + E Q   + I +VF +      D +D ++        K+       I ++      
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD------MPKSILS-KEEIDHIIMSKDA 60

Query: 112 DFMTPFL-------------RMAKKGLKGNSSSAKAAAAAVSLKSGLNKEEALEEIDKLQ 158
              T  L             +  ++ L+ N     +       +  +     +E+ D+L 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 159 KGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNLQDE--------FGIG-TVI 209
                    + FAK +  R             +++  +  L+           G G T +
Sbjct: 121 NDN------QVFAKYNVSR--------LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 210 DDNEARTLIAATAVKSCQDTLSKLQEKQEQ-----SLEEAKTEQQRIIEAHEKFIKLRNR 264
                       A+  C     K+Q K +      +L+   + +  +    E   KL  +
Sbjct: 167 ------------ALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVL----EMLQKLLYQ 208

Query: 265 FIVNQTDEREQEQPWEENENKTTAGSELKADLAPQGKSDVELSSKKIEDQVAVDSNESLA 324
              N T   +     +   +       ++A+L            + ++ +        L 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIH------SIQAEL-----------RRLLKSK---PYENCL- 247

Query: 325 VTQLVEKIDELVDKVVNLES-AVSSQTALVKT-LRSETDQLEG----HISRLEGEKESLI 378
              LV  +  + +      +  +S +  L+ T  +  TD L      HIS L+    +L 
Sbjct: 248 ---LV--LLNVQNAKA-WNAFNLSCKI-LLTTRFKQVTDFLSAATTTHIS-LDHHSMTLT 299

Query: 379 ADSDATSSADYLSEKLQSGKIEEDVENAGLFPEVKAISDAKNEKDDNILTS--GAEKEEE 436
            D   +    YL  + Q            L  EV   +            S       + 
Sbjct: 300 PDEVKSLLLKYLDCRPQD-----------LPREVLTTNP--------RRLSIIAESIRDG 340

Query: 437 ENDTVKAQREDNDSGPSDKPDEKKFMSETASVNLDT-EPDEP-------GI-EEGEETPN 487
                     DN        +  K ++     +L+  EP E         +       P 
Sbjct: 341 LA------TWDN----WKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 488 ------WRMLSSGLEDREKILLEEYTSVLHNYTDVRRKLSVMEKKNRDRFIEL-ALQIRE 540
                 W  +     D   ++ +     LH Y       S++EK+ ++  I + ++ +  
Sbjct: 390 ILLSLIWFDVIK--SDVMVVVNK-----LHKY-------SLVEKQPKESTISIPSIYLEL 435

Query: 541 LENAVAFRDEEIHALRQKLGTVSHTSLHETMDTHTSLTES-----------H-QEQEQEE 588
                    E  +AL + +  V H ++ +T D+   +              H +  E  E
Sbjct: 436 KVKL-----ENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 589 SHESITQTTATPVSHFSFLG------SSQQPAPSSSEHIYDYRERIDLKKYPKREQSKVN 642
                          F FL       S+   A  S  +         LK Y         
Sbjct: 489 RMTLFRMV----FLDFRFLEQKIRHDSTAWNASGSILNTL-----QQLKFYK-------- 531

Query: 643 VKHVKIHCTISPIEEKIRADIDELLEENLEFWLRFSTSVHQIQKYQSTVQ 692
             ++  +    P  E++   I       L+F  +   ++    KY   ++
Sbjct: 532 -PYICDND---PKYERLVNAI-------LDFLPKIEENLI-CSKYTDLLR 569
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query891
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.77
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.28
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.95
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.61
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.77
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.02
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.97
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 93.63
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 92.56
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 91.87
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 90.8
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.64
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 87.46
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 87.2
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.07
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 86.64
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 80.35
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.77  E-value=0.0015  Score=63.67  Aligned_cols=47  Identities=9%  Similarity=0.102  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 043674          153 EIDKLQKGILGLQTEKEFAKSSYERGYEKYWEIEDQITEMQAKVCNL  199 (891)
Q Consensus       153 EI~~LQk~il~LQtEKEa~~lqYqqsleK~~~LE~qIs~~Qe~v~~L  199 (891)
                      ++..++..+..+..+-......+...-..+..++.++..++..+..+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (284)
T 1c1g_A           49 KLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF   95 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333444444444444444444444444444
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00