Citrus Sinensis ID: 043686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Secondary Structure (PSIPRED)
ccEEccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHcHHcHEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEcccccEccccccEcccccc
Coil and Loop (DISEMBL)
milgyslhgqreLGLSLFSELekkssieidpLTFAAVLHACSTAGMVEEGWLcfnrirspkvthHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLcelkplsaenYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHvfgtgdvscprseGIFWELQSLMKkmegdslrpkpdfslhyvdeerkwtqighsEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEgeiiikdpscfhhfeygfcscrdfw
Flexible Loop (DISEMBL)
milgyslhgqrELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Low Complexity Region (SEG)
MILGYSLHGQRelglslfselekkssieiDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Disordered region (IsUnstruct)
***********ELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLM*************FSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF*
Disordered Region (DISOPRED)
MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Disordered Region (DISEMBL)
MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Disordered Region (DISPRO)
MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9SMZ2	990	Pentatricopeptide repeat-	yes	no	0.985	0.280	0.367	4e-51
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.996	0.322	0.370	9e-51
Q9ZVF4	584	Pentatricopeptide repeat-	no	no	0.996	0.481	0.371	2e-49
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.996	0.354	0.384	5e-49
Q9SS60	882	Pentatricopeptide repeat-	no	no	0.996	0.318	0.376	1e-48
Q9LW63	715	Putative pentatricopeptid	no	no	0.996	0.393	0.364	3e-48
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.996	0.404	0.365	4e-48
Q0WN60	970	Pentatricopeptide repeat-	no	no	0.982	0.285	0.381	6e-48
P0C899	686	Putative pentatricopeptid	no	no	0.996	0.409	0.384	1e-47
Q56XI1	705	Pentatricopeptide repeat-	no	no	1.0	0.4	0.376	3e-47

>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 112/305 (36%), Positives = 175/305 (57%), Gaps = 27/305 (8%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           M++G + HG+ +  L LF ++ K   I+ D +TF  VL ACS +G+V E    +  +RS 
Sbjct: 690 MLVGLAQHGEGKETLQLFKQM-KSLGIKPDKVTFIGVLSACSHSGLVSEA---YKHMRSM 745

Query: 60  -------PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKT 112
                  P++ H++ +   L RAGL  +A   I+   ME    + R LL  CR+    +T
Sbjct: 746 HGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTET 805

Query: 113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA--------------YSWIEFRN 158
           GKRV  +L EL+PL +  Y++LSN YAA +KWD +  A              +SWIE +N
Sbjct: 806 GKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 865

Query: 159 KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEI 217
           K+H+F   D S  ++E I+ +++ +++ ++ +   P+ DF+L  V+EE K   +  HSE 
Sbjct: 866 KIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEK 925

Query: 218 LALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCS 277
           LA++FGL+ST     I V KNLR+   CH+  K I+K+   EI+++D + FH F+ G CS
Sbjct: 926 LAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICS 985

Query: 278 CRDFW 282
           C D+W
Sbjct: 986 CGDYW 990

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  200 bits (509), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 177/302 (58%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           MI GY +HG  +  ++LF+++ +++ IE D ++F ++L+ACS +G+V+EGW  FN +R  
Sbjct: 571 MIAGYGMHGFGKEAIALFNQM-RQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHE 629

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
               P V H+A +V +LAR G   +A  FI+   +     +  ALL GCRIH  VK  ++
Sbjct: 630 CKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEK 689

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVH 161
           V +++ EL+P +   Y++++N YA   KW+ V              N   SWIE + +V+
Sbjct: 690 VAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVN 749

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDE-ERKWTQIGHSEILAL 220
           +F  GD S P +E I   L+ +  +M  +   P   ++L   +E E++    GHSE LA+
Sbjct: 750 IFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAM 809

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           + G+IS+  G  I VTKNLR+   CH+ AK +SK+   EI+++D + FH F+ G CSCR 
Sbjct: 810 ALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRG 869

Query: 281 FW 282
           FW
Sbjct: 870 FW 871

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 168/304 (55%), Gaps = 23/304 (7%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCF------ 54
           MI+GY+++G     L+LF+ ++ +  +  + +TF  VL ACS AG+V EG   F      
Sbjct: 282 MIVGYAMNGDSREALTLFTTMQNEG-LRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQS 340

Query: 55  -NRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTG 113
            ++   P+  H+A MV +L R+GL +EA  FI++  +E    +  ALL  C +H  +  G
Sbjct: 341 NDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILG 400

Query: 114 KRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNK 159
           ++V D L E  P     +++LSN YAA  KWD V++              AYS +EF  K
Sbjct: 401 QKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGK 460

Query: 160 VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGH-SEIL 218
           +H F  GD S P+S+ I+ +L  ++KK+      P      H V+ E K   + H SE L
Sbjct: 461 IHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKL 520

Query: 219 ALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSC 278
           A++FGLI  + G  I V KNLR    CH F+K +S +   EII++D + FHHF  G CSC
Sbjct: 521 AIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSC 580

Query: 279 RDFW 282
           ++FW
Sbjct: 581 KEFW 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  194 bits (493), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 116/302 (38%), Positives = 167/302 (55%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           MI GY LHGQ +  L++F E+   S I   P+TF  VL+ACS AG+V+EG   FN +   
Sbjct: 492 MISGYGLHGQGQEALNIFYEM-LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHR 550

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
               P V H+A MV +L RAG    A  FI+   +E    V   LL  CRIH      + 
Sbjct: 551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWD---VVNQ-----------AYSWIEFRNKVH 161
           V ++L EL P +   +++LSN ++A+  +     V Q            Y+ IE     H
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL 220
           VF +GD S P+ + I+ +L+ L  KM     +P+ + +LH V+EE +   +  HSE LA+
Sbjct: 671 VFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAI 730

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FGLI+T+ G  I + KNLR+   CH   K ISK+ E  I+++D + FHHF+ G CSC D
Sbjct: 731 AFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD 790

Query: 281 FW 282
           +W
Sbjct: 791 YW 792

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 172/303 (56%), Gaps = 22/303 (7%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           MI  Y ++G+ E  L  F+++EK S I  D + F A+++ACS +G+V+EG  CF ++++ 
Sbjct: 581 MIYAYGMYGEGEKALETFADMEK-SGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTH 639

Query: 60  ----PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
               P + H+A +V +L+R+    +A  FIQ   ++    +  ++L  CR    ++T +R
Sbjct: 640 YKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAER 699

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVH 161
           V  ++ EL P      I+ SN YAA  KWD V              N  YSWIE    VH
Sbjct: 700 VSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVH 759

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQI-GHSEILA 219
           VF +GD S P+SE I+  L+ L   M  +   P P + S +  +EE K   I GHSE LA
Sbjct: 760 VFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLA 819

Query: 220 LSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCR 279
           ++FGL++T+ G  + V KNLR+   CH+  K ISK+V  EI+++D + FH F+ G CSC+
Sbjct: 820 IAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCK 879

Query: 280 DFW 282
           D W
Sbjct: 880 DRW 882

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/302 (36%), Positives = 171/302 (56%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           +I+G++LHG     +SLF E+ K+  ++ + + F AVL ACS  G+V+E W  FN +   
Sbjct: 415 IIMGHALHGHGHEAVSLFEEM-KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 473

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
              + ++ H+A +  +L RAG  +EA  FI +  +E    V   LL  C +H  ++  ++
Sbjct: 474 YGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEK 533

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVH 161
           V +++  +   +   Y+++ N YA+  +W  + +              A SWIE +NK H
Sbjct: 534 VAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEILAL 220
            F +GD S P  + I   L+++M++ME +         LH VDEE K   + GHSE LA+
Sbjct: 594 GFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAV 653

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FG+I+T+ G TI VTKN+R+   CH   K ISK+ E EII++D S FHHF  G CSC D
Sbjct: 654 AFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGD 713

Query: 281 FW 282
           +W
Sbjct: 714 YW 715

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  191 bits (486), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 110/301 (36%), Positives = 167/301 (55%), Gaps = 20/301 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           MI+GY LHG+    +SL+  +E+   +  + +TF  +L AC+ +GMV EGW  FNR+   
Sbjct: 395 MIVGYGLHGRAREAISLYRAMER-GGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453

Query: 59  --SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRV 116
             +P+  H+A ++ +L RAG  D+A   I+   ++    V  ALL  C+ H  V+ G+  
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYA 513

Query: 117 IDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY--------------SWIEFRNKVHV 162
             QL  + P +  +Y+ LSN YAA   WD V +                SW+E R ++  
Sbjct: 514 AQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEA 573

Query: 163 FGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYV-DEERKWTQIGHSEILALS 221
           F  GD S PR E I  +++ +  +++        D SLH + DEE + T   HSE +A++
Sbjct: 574 FRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIA 633

Query: 222 FGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF 281
           +GLIST  G  + +TKNLR    CH   K ISK+V+ EI+++D + FHHF+ G CSC D+
Sbjct: 634 YGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDY 693

Query: 282 W 282
           W
Sbjct: 694 W 694

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 117/307 (38%), Positives = 170/307 (55%), Gaps = 30/307 (9%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           MI+GY +HG  +  + LF E+++      D LTF  VL AC+ +G++ EG    ++++S 
Sbjct: 669 MIMGYGIHGLAKEAIKLFEEMQRTGH-NPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSS 727

Query: 60  ----PKVTHHALMVSVLARAGLFDEA-RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGK 114
               P + H+A ++ +L RAG  D+A R+  +E   E    + ++LL  CRIH  ++ G+
Sbjct: 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGE 787

Query: 115 RVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY--------------SWIEFRNKV 160
           +V  +L EL+P   ENY++LSN YA   KW+ V +                SWIE   KV
Sbjct: 788 KVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKV 847

Query: 161 HVFGTGDVSCPRSEGIFWELQSLMK----KMEGDSLRPKPDFSLHYVDEERKWTQI-GHS 215
             F  G+    R    F E++SL      K+     RP      H + EE K  Q+ GHS
Sbjct: 848 FSFVVGE----RFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHS 903

Query: 216 EILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGF 275
           E LAL++GLI T  G TI V KNLR+   CH+ AK ISK++E EI+++D   FHHF+ G 
Sbjct: 904 EKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGV 963

Query: 276 CSCRDFW 282
           CSC D+W
Sbjct: 964 CSCGDYW 970

Arabidopsis thaliana (taxid: 3702)

>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 164/307 (53%), Gaps = 26/307 (8%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           MI  Y   G+    ++LFS+L+  S +  D + F   L ACS AG++EEG  CF  +   
Sbjct: 381 MISAYGFSGRGCDAVALFSKLQD-SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
              +P++ H A MV +L RAG   EA  FIQ+  ME    V  ALL  CR+H     G  
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVH 161
             D+L +L P  +  Y++LSN YA   +W+ V              N   S +E    +H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL 220
            F  GD S P+S+ I+ EL  L+KKM+     P  + +LH V+EE K T +  HSE LA+
Sbjct: 560 TFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 619

Query: 221 SFGLISTQ-----VGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGF 275
            F L++T+        TI +TKNLR+   CH  AK IS++   EIII+D + FH F +G 
Sbjct: 620 VFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGV 679

Query: 276 CSCRDFW 282
           CSC D+W
Sbjct: 680 CSCGDYW 686

Arabidopsis thaliana (taxid: 3702)

>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 157/303 (51%), Gaps = 21/303 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           +I GY+ HG  E  L +F E+    S + + +TF A L ACS AGMVEEG   +  + S 
Sbjct: 403 IISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESV 462

Query: 60  ----PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
               P   H+A MV +L RAG F+EA   I    +E    V  +LL  CR H Q+   + 
Sbjct: 463 FGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEF 522

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVH 161
              +L E++P ++  YI+LSN YA++ +W  V +                SW E  NKVH
Sbjct: 523 CAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVH 582

Query: 162 VFGTGDVSC-PRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILA 219
            F  G ++  P  E I   L  L   +      P   ++LH VDEE K   +  HSE LA
Sbjct: 583 AFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLA 642

Query: 220 LSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCR 279
           +++ L+    G  I V KNLR+   CH   K ISK+ E EII++D + FHHF  G CSC+
Sbjct: 643 VAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCK 702

Query: 280 DFW 282
           D+W
Sbjct: 703 DYW 705

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
225441828	662	PREDICTED: pentatricopeptide repeat-cont	1.0	0.425	0.652	1e-109
147852318	734	hypothetical protein VITISV_011875 [Viti	1.0	0.384	0.652	1e-109
224072451	663	predicted protein [Populus trichocarpa]	1.0	0.425	0.614	1e-102
449440223	629	PREDICTED: pentatricopeptide repeat-cont	0.996	0.446	0.6	5e-98
294464140	312	unknown [Picea sitchensis]	0.996	0.900	0.427	1e-59
242090705	878	hypothetical protein SORBIDRAFT_09g02188	0.996	0.320	0.394	3e-53
116792842	370	unknown [Picea sitchensis]	0.996	0.759	0.394	4e-52
449465002	926	PREDICTED: pentatricopeptide repeat-cont	0.996	0.303	0.380	7e-52
359483532	824	PREDICTED: pentatricopeptide repeat-cont	0.996	0.341	0.390	1e-51
297798624	997	pentatricopeptide repeat-containing prot	0.985	0.278	0.380	1e-51

>gi|225441828|ref|XP_002278166.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Vitis vinifera]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/296 (65%), Positives = 235/296 (79%), Gaps = 14/296 (4%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP 60
           MILGYSLHGQ ELG+ LF ++EK SS+EID + +AA LHAC+TA +VE+G   FN I +P
Sbjct: 367 MILGYSLHGQGELGVDLFRKMEKNSSVEIDQIAYAAALHACTTARLVEQGRFYFNCITAP 426

Query: 61  KVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120
           K  H+ALMV++L+R GLFDEAR+F++E+ +E + EVLRALL+GCRIH  ++T KRVI+QL
Sbjct: 427 KSRHYALMVALLSRVGLFDEARVFMEEHKLEGHVEVLRALLDGCRIHHNMRTAKRVIEQL 486

Query: 121 CELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVHVFGTG 166
           C+L+ L+A+NY++LSNWY++ AKWD+VN+              AYSWIEFRNK+HVFGTG
Sbjct: 487 CDLQTLNADNYVLLSNWYSSFAKWDMVNELRETIRDMGLKPRKAYSWIEFRNKIHVFGTG 546

Query: 167 DVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLIS 226
           DVS PRSE I+WEL SLMKK+E +  R   DFSLH VDEER+   IGHSE+LA SFGLIS
Sbjct: 547 DVSHPRSEKIYWELHSLMKKIEEEGTRLNLDFSLHDVDEERECVPIGHSELLATSFGLIS 606

Query: 227 TQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
           TQ GATI VTKNLRM   CHD AKAISK+VE EIIIKDPSCFHHF+ GFCSC DFW
Sbjct: 607 TQAGATIRVTKNLRMCGNCHDSAKAISKIVEREIIIKDPSCFHHFKDGFCSCGDFW 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852318|emb|CAN82226.1| hypothetical protein VITISV_011875 [Vitis vinifera]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/296 (65%), Positives = 235/296 (79%), Gaps = 14/296 (4%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP 60
           MILGYSLHGQ ELG+ LF ++EK SS+EID + +AA LHAC+TA +VE+G   FN I +P
Sbjct: 439 MILGYSLHGQGELGVDLFRKMEKNSSVEIDQIAYAAALHACTTARLVEQGRFYFNCITAP 498

Query: 61  KVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120
           K  H+ALMV++L+R GLFDEAR+F++E+ +E + EVLRALL+GCRIH  ++T KRVI+QL
Sbjct: 499 KSRHYALMVALLSRVGLFDEARVFMEEHKLEGHVEVLRALLDGCRIHHNMRTAKRVIEQL 558

Query: 121 CELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVHVFGTG 166
           C+L+ L+A+NY++LSNWY++ AKWD+VN+              AYSWIEFRNK+HVFGTG
Sbjct: 559 CDLQTLNADNYVLLSNWYSSFAKWDMVNELRETIRDMGLKPRKAYSWIEFRNKIHVFGTG 618

Query: 167 DVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLIS 226
           DVS PRSE I+WEL SLMKK+E +  R   DFSLH VDEER+   IGHSE+LA SFGLIS
Sbjct: 619 DVSHPRSEKIYWELHSLMKKIEEEGTRLNLDFSLHDVDEERECVPIGHSELLATSFGLIS 678

Query: 227 TQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
           TQ GATI VTKNLRM   CHD AKAISK+VE EIIIKDPSCFHHF+ GFCSC DFW
Sbjct: 679 TQAGATIRVTKNLRMCGNCHDSAKAISKIVEREIIIKDPSCFHHFKDGFCSCGDFW 734

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072451|ref|XP_002303738.1| predicted protein [Populus trichocarpa] gi|222841170|gb|EEE78717.1| predicted protein [Populus trichocarpa]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/296 (61%), Positives = 224/296 (75%), Gaps = 14/296 (4%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP 60
           MILG+SLHG+ ELG+ LF  +EK   +E D  T+AAVLH C+ A MVEEG   FN I+ P
Sbjct: 368 MILGFSLHGKGELGVELFCRMEKDQRVEADQFTYAAVLHCCTAACMVEEGKFYFNCIKEP 427

Query: 61  KVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120
            +TH+ALMVS+LARA LFDEAR F++E+H+ER+ EVLRALL+GC +H +   GK+V +QL
Sbjct: 428 NITHYALMVSLLARACLFDEARAFMEEHHIERHAEVLRALLDGCWMHHRRNIGKQVFEQL 487

Query: 121 CELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVHVFGTG 166
           C+L+PL AENY++LSNWY+   KWD+V++              AYSWIEF+NKVHVFGTG
Sbjct: 488 CDLEPLDAENYVLLSNWYSDNGKWDLVDKLRETIMSMGSKPKKAYSWIEFQNKVHVFGTG 547

Query: 167 DVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLIS 226
           D+S PRSE I+ ELQ LMKK+  ++ RP   FS H VD ER+  QIGHSE+LALSFGLI 
Sbjct: 548 DISHPRSERIYTELQCLMKKVNAEAQRPASGFSFHGVDAERECIQIGHSEMLALSFGLIC 607

Query: 227 TQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
           TQ GATI +TKNLRM   CHD  K +SK+VE EIIIKDP+CFHHF+ GFCSCRDFW
Sbjct: 608 TQPGATIRITKNLRMCRGCHDSTKLVSKIVEREIIIKDPNCFHHFKDGFCSCRDFW 663

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440223|ref|XP_004137884.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus]

 Score =  363 bits (932), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 177/295 (60%), Positives = 220/295 (74%), Gaps = 14/295 (4%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP 60
           M LGYSLHGQ +LG+SLF E+EK   +  D +T+ AVLHAC+TA MV+EG   F+ I  P
Sbjct: 334 MTLGYSLHGQGKLGVSLFREMEKNFKMRRDEITYTAVLHACTTANMVDEGDSYFSCITKP 393

Query: 61  KVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL 120
            V H AL V++LARAG  DEAR F+++  ++++PE+LRALL+GCR H Q K GKR+I+QL
Sbjct: 394 TVAHIALKVALLARAGRLDEARTFVEKKKLDKHPEILRALLDGCRNHRQQKLGKRIIEQL 453

Query: 121 CELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVHVFGTG 166
           C+L+PL+AENYI+LSNWYA   KWD+V               +AYSWIEF NK+HVFGTG
Sbjct: 454 CDLEPLNAENYILLSNWYACNEKWDMVEKLRETIRDMGLRPKKAYSWIEFCNKIHVFGTG 513

Query: 167 DVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLIS 226
           DVS PRS+ I+W LQ LMK+ME D  +P PDFSLH VDEER+   IGHSE+LA+SFGLIS
Sbjct: 514 DVSHPRSQNIYWNLQCLMKEMEEDGSKPNPDFSLHDVDEERECVPIGHSELLAISFGLIS 573

Query: 227 TQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF 281
           T+ G TI +TKNLR+ H CH+ AK ISKMV  EII+KDP  FHHF+ G CSC +F
Sbjct: 574 TEAGRTIRITKNLRVCHSCHESAKFISKMVGREIIVKDPYVFHHFKDGCCSCENF 628

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]

 Score =  235 bits (600), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/302 (42%), Positives = 186/302 (61%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           MI+GY +HG  E  L LF++++++  ++ + +TF +VL ACS AG+V+EGW C+N +   
Sbjct: 12  MIVGYGMHGHGEDALVLFTQMQQRG-VKPNEITFISVLSACSHAGLVDEGWKCYNCMTLD 70

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
              +P V H+A MV +L RAG  +EA  FI++  +E    V  A L  CRIH  ++ G+R
Sbjct: 71  YAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGER 130

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVH 161
           V + L  L P +A  Y++LSN YAA  +WD V +                S IE  NK+H
Sbjct: 131 VAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGCSLIEVNNKLH 190

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEILAL 220
            F  GD+S P++E I+  L++L ++ME     P  DF LH V+EE K   +  HSE LA+
Sbjct: 191 SFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENMLFAHSEKLAI 250

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FGLIST+ G +I +TKNLR+   CH   K ISK+V+ EII++D + FHHF+ G CSC D
Sbjct: 251 AFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHHFKDGLCSCGD 310

Query: 281 FW 282
           +W
Sbjct: 311 YW 312

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor] gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 175/302 (57%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           M+ GY+ HG  +  L +F ++E +  IE+D +TF +V+  C+ AG+VEEG   F+ +   
Sbjct: 578 MLSGYAQHGYSQKALDVFRQMEAEG-IEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARD 636

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
              +P + H+A MV + +RAG  DEA   I+       P V R LL  C++H  V+ GK 
Sbjct: 637 YGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKL 696

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKW---DVVNQ-----------AYSWIEFRNKVH 161
             ++L  L+P  +  Y++LSN Y+A  KW   D V +             SWI+ +NKVH
Sbjct: 697 AAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVH 756

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL 220
            F   D S P SE I+ +L+++  K++ +   P   F+LH V EE+K   +  HSE LAL
Sbjct: 757 SFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLAL 816

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FGLI+T  GA +H+ KNLR+   CH   K +SK+ + EI+++D S FHHF  G CSC D
Sbjct: 817 AFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGD 876

Query: 281 FW 282
           FW
Sbjct: 877 FW 878

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 119/302 (39%), Positives = 172/302 (56%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           MI G + HG  +  + LF ++  ++ ++ + +TF  VL  CS AG+V+EG   F+ +   
Sbjct: 70  MISGLAQHGCGKEAVLLFEQM-LQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRD 128

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
              SPK  H++ MV +  RAG  DEA  FI +  +E    V  +LL  CR+H  ++  +R
Sbjct: 129 HGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAER 188

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVH 161
            ++QL EL P +   Y++LSN YAA  +WD   +                SWIE +NKVH
Sbjct: 189 AVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVH 248

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERK-WTQIGHSEILAL 220
            F  GD S P+ E I+  L++L  +M+     P  +F LH V+EE+K W    HSE LA+
Sbjct: 249 PFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAI 308

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FG+IST  G TI V KNLR+   CH   K IS++V  EI+++D   FHHF+ G CSC D
Sbjct: 309 AFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGD 368

Query: 281 FW 282
           +W
Sbjct: 369 YW 370

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus]

 Score =  210 bits (534), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 115/302 (38%), Positives = 178/302 (58%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           MI GY +HG     ++ F+++ + + IE D ++F ++L+ACS +G+++EGW  FN ++  
Sbjct: 626 MIAGYGMHGYGSEAINTFNQM-RMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKE 684

Query: 60  ----PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
               P + H+A MV +LAR G   +A  FI+   ++    +  ALL GCRIH  VK  ++
Sbjct: 685 CQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEK 744

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVH 161
           V +++ EL+P +   Y++L+N YA   KW+ V              N   SWIE + K++
Sbjct: 745 VAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKIN 804

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEILAL 220
           +F  GD S P+++ I   L+ L  KM+ +   PK  ++L   DE  K   + GHSE LA+
Sbjct: 805 IFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAM 864

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FG+++   G TI VTKNLR+   CH+ AK +SK    EII++D S FHHF+ G CSCR 
Sbjct: 865 AFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRG 924

Query: 281 FW 282
           +W
Sbjct: 925 YW 926

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Vitis vinifera]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 118/302 (39%), Positives = 180/302 (59%), Gaps = 21/302 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           MI GY +HG     ++ F+E+ + S IE D ++F ++L+ACS +G+++EGW  FN +R+ 
Sbjct: 524 MIAGYGMHGYGSEAIAAFNEM-RNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNN 582

Query: 60  ----PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
               PK  H+A +V +LARAG   +A  FI+   +E    +  ALL GCRI+  VK  ++
Sbjct: 583 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEK 642

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVH 161
           V + + EL+P +   Y++L+N YA   KW+ V              N   SWIE + KVH
Sbjct: 643 VAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVH 702

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDE-ERKWTQIGHSEILAL 220
           +F TGD S P +  I   L+    +M+ +   PK  ++L   D+ E++    GHSE +A+
Sbjct: 703 IFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAM 762

Query: 221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           +FG++S   G T+ VTKNLR+   CH+ AK +SKMV+ +II++D + FHHF+ G CSCR 
Sbjct: 763 AFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRG 822

Query: 281 FW 282
            W
Sbjct: 823 HW 824

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/305 (38%), Positives = 176/305 (57%), Gaps = 27/305 (8%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
           M++G + HG+ +  L LF ++E    I+ D +TF  VL ACS +G+V E +     IRS 
Sbjct: 697 MLVGLAQHGEGKEALQLFKQMESLG-IKPDKVTFIGVLSACSHSGLVSEAY---KYIRSM 752

Query: 60  -------PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKT 112
                  P++ H++ +   L RAGL  EA   I    ME    + R LL  CR+    +T
Sbjct: 753 HRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTET 812

Query: 113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA--------------YSWIEFRN 158
           GKRV  +L EL+PL +  Y++LSN YAA +KWD +  A              +SWIE +N
Sbjct: 813 GKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 872

Query: 159 KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEI 217
           K+H+F   D S P++E I+ +++ +++ ++ +   P+ DF+L  V+EE K   +  HSE 
Sbjct: 873 KIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEK 932

Query: 218 LALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCS 277
           LA++FGL+ST     I V KNLR+   CH+  K ISK+ + EI+++D + FH F+ G CS
Sbjct: 933 LAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICS 992

Query: 278 CRDFW 282
           C D+W
Sbjct: 993 CGDYW 997

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2170548	608	AT5G40410 [Arabidopsis thalian	0.897	0.416	0.394	9.6e-44
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.996	0.283	0.347	4.2e-43
TAIR|locus:2049562	584	AT2G01510 "AT2G01510" [Arabido	0.790	0.381	0.386	3.4e-38
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.787	0.282	0.384	3.6e-38
TAIR|locus:2102852	657	CRR2 "AT3G46790" [Arabidopsis	0.790	0.339	0.378	2.1e-37
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.790	0.256	0.369	3.8e-36
TAIR|locus:505006130	970	AT1G18485 [Arabidopsis thalian	0.783	0.227	0.406	5e-36
TAIR|locus:2118964	823	EMB2758 "embryo defective 2758	0.794	0.272	0.368	7.7e-36
TAIR|locus:2091546	628	AT3G13770 [Arabidopsis thalian	0.790	0.355	0.382	1.7e-35
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.790	0.281	0.369	2.6e-35

TAIR|locus:2170548 AT5G40410 [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 108/274 (39%), Positives = 154/274 (56%)

Query:    30 DPLTFAAVLHACSTAGMVEEGWLCFN----RIR-SPKVTHHALMVSVLARAGLFDEARIF 84
             D +TF  +L+ACS +G+VEEG   F     R R  P++ H++ MV +L R+GL  +A   
Sbjct:   335 DHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGL 394

Query:    85 IQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW 144
             I+E  ME    V  ALL  CR++   + G +  ++L EL+P    NY+MLSN Y+A   W
Sbjct:   395 IKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLW 454

Query:   145 -------DVVNQ-------AYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGD 190
                    +++ Q         S+IE  NK+H F  GD S P SE I  +L+ + KKM+ +
Sbjct:   455 KDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSE 514

Query:   191 -SLRPKPDFSLHYVDEERKWTQIG-HSEILALSFGLISTQVGATIHVTKNLRMRHICHDF 248
                + K +F LH V E+ K   I  HSE +A++FGL+       I + KNLR+   CH+ 
Sbjct:   515 MGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHET 574

Query:   249 AKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             AKAIS + +  III+D   FHHF  G CSC D+W
Sbjct:   575 AKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 4.2e-43, P = 4.2e-43
 Identities = 105/302 (34%), Positives = 164/302 (54%)

Query:     1 MILGYSLHGQRXXXXXXXXXXXXXXXXXXDPLTFAAVLHACSTAGMVEEGWLCFNRIRS- 59
             M++G + HG+                   D +TF  VL ACS +G+V E +     +   
Sbjct:   690 MLVGLAQHGE-GKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGD 748

Query:    60 ----PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
                 P++ H++ +   L RAGL  +A   I+   ME    + R LL  CR+    +TGKR
Sbjct:   749 YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKR 808

Query:   116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA--------------YSWIEFRNKVH 161
             V  +L EL+PL +  Y++LSN YAA +KWD +  A              +SWIE +NK+H
Sbjct:   809 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868

Query:   162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL 220
             +F   D S  ++E I+ +++ +++ ++ +   P+ DF+L  V+EE K   +  HSE LA+
Sbjct:   869 IFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 928

Query:   221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
             +FGL+ST     I V KNLR+   CH+  K I+K+   EI+++D + FH F+ G CSC D
Sbjct:   929 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD 988

Query:   281 FW 282
             +W
Sbjct:   989 YW 990

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 92/238 (38%), Positives = 132/238 (55%)

Query:    60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119
             P+  H+A MV +L R+GL +EA  FI++  +E    +  ALL  C +H  +  G++V D 
Sbjct:   347 PRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADV 406

Query:   120 LCELKPLSAENYIMLSNWYAAEAKWDVVNQ--------------AYSWIEFRNKVHVFGT 165
             L E  P     +++LSN YAA  KWD V++              AYS +EF  K+H F  
Sbjct:   407 LVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNR 466

Query:   166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGH-SEILALSFGL 224
             GD S P+S+ I+ +L  ++KK+      P      H V+ E K   + H SE LA++FGL
Sbjct:   467 GDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGL 526

Query:   225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             I  + G  I V KNLR    CH F+K +S +   EII++D + FHHF  G CSC++FW
Sbjct:   527 IKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 3.6e-38, Sum P(2) = 3.6e-38
 Identities = 92/239 (38%), Positives = 136/239 (56%)

Query:    60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119
             P ++H+A MV +  RAGL  EA+ FI++  +E       +LL  CR+H  +  GK   ++
Sbjct:   549 PTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAER 608

Query:   120 LCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVHVFGT 165
             L  L+P ++  Y  L+N Y+A  KW+                 Q +SWIE ++KVHVFG 
Sbjct:   609 LLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGV 668

Query:   166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI--GHSEILALSFG 223
              D + P    I+  ++ +  +++     P     LH ++EE K  QI   HSE LA++FG
Sbjct:   669 EDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVK-EQILRHHSEKLAIAFG 727

Query:   224 LISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             LIST    T+ + KNLR+ + CH   K ISK+V  EII++D + FHHF+ GFCSCRD+W
Sbjct:   728 LISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
 Identities = 90/238 (37%), Positives = 132/238 (55%)

Query:    60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119
             P++ H+A MV +L RA   DEA   +Q+   E  P+V  +LL  CRIH  V+  +R   +
Sbjct:   420 PQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

Query:   120 LCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS--------------WIEFRNKVHVFGT 165
             L  L+P +A NY++L++ YA    WD V +                 W+E R K++ F +
Sbjct:   480 LFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVS 539

Query:   166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVD-EERKWTQIGHSEILALSFGL 224
              D   P  E I   L  L + M+     P+    L+ ++ EE++   +GHSE LAL+FGL
Sbjct:   540 VDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGL 599

Query:   225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             I+T  G  I +TKNLR+   CH F K ISK +E EI+++D + FH F+ G CSC D+W
Sbjct:   600 INTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657

GO:0009507 "chloroplast" evidence=ISS

GO:0031425 "chloroplast RNA processing" evidence=IMP

GO:0031426 "polycistronic mRNA processing" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
 Identities = 88/238 (36%), Positives = 134/238 (56%)

Query:    60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119
             P V H+A +V +LAR G   +A  FI+   +     +  ALL GCRIH  VK  ++V ++
Sbjct:   634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

Query:   120 LCELKPLSAENYIMLSNWYAAEAKWDVV--------------NQAYSWIEFRNKVHVFGT 165
             + EL+P +   Y++++N YA   KW+ V              N   SWIE + +V++F  
Sbjct:   694 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753

Query:   166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDE-ERKWTQIGHSEILALSFGL 224
             GD S P +E I   L+ +  +M  +   P   ++L   +E E++    GHSE LA++ G+
Sbjct:   754 GDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGI 813

Query:   225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             IS+  G  I VTKNLR+   CH+ AK +SK+   EI+++D + FH F+ G CSCR FW
Sbjct:   814 ISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 5.0e-36, P = 5.0e-36
 Identities = 98/241 (40%), Positives = 133/241 (55%)

Query:    60 PKVTHHALMVSVLARAGLFDEA-RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVID 118
             P + H+A ++ +L RAG  D+A R+  +E   E    + ++LL  CRIH  ++ G++V  
Sbjct:   732 PNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAA 791

Query:   119 QLCELKPLSAENYIMLSNWYAAEAKW-DV--VNQAY-----------SWIEFRNKVHVFG 164
             +L EL+P   ENY++LSN YA   KW DV  V Q             SWIE   KV  F 
Sbjct:   792 KLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFV 851

Query:   165 TGDVSCPRSEGI--FWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEILALS 221
              G+      E I   W +  L  K+     RP      H + EE K  Q+ GHSE LAL+
Sbjct:   852 VGERFLDGFEEIKSLWSI--LEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALT 909

Query:   222 FGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF 281
             +GLI T  G TI V KNLR+   CH+ AK ISK++E EI+++D   FHHF+ G CSC D+
Sbjct:   910 YGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDY 969

Query:   282 W 282
             W
Sbjct:   970 W 970

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 7.7e-36, Sum P(2) = 7.7e-36
 Identities = 88/239 (36%), Positives = 131/239 (54%)

Query:    59 SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVID 118
             +P + H+  MV +  RAG  + A  FI+   ++    +  ALL  CR+H  V  GK   +
Sbjct:   585 TPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASE 644

Query:   119 QLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS------------W--IEFRNKVHVFG 164
              L E++P     +++LSN YA+  KW+ V++  S            W  +E  NKV VF 
Sbjct:   645 HLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFY 704

Query:   165 TGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYV-DEERKWTQIGHSEILALSFG 223
             TG+ + P  E ++ EL +L  K++     P   F L  V D+E++   + HSE LA++F 
Sbjct:   705 TGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFA 764

Query:   224 LISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             LI+T    TI + KNLR+   CH   K ISK+ E EII++D + FHHF+ G CSC D+W
Sbjct:   765 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2091546 AT3G13770 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 1.7e-35, P = 1.7e-35
 Identities = 91/238 (38%), Positives = 130/238 (54%)

Query:    60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119
             P   H+  +V +L RAG  DEA  FI+    +    VL +LL  CR+H+ V  G+ V  +
Sbjct:   391 PGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRR 450

Query:   120 LCELKPLSAENYIMLSNWYAAEAKWDVVNQAY--------------SWIEFRNKVHVFGT 165
             L E++P +A NY++LSN YA+  +W  VN                 SWI+    +H F  
Sbjct:   451 LIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHA 510

Query:   166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI-GHSEILALSFGL 224
              D + PR E +  +++ +  KM+     P     L+ VDEE+K   + GHSE LAL+FGL
Sbjct:   511 NDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGL 570

Query:   225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             I+T  G  I V KNLR+   CH+FAK  SK+ E E+ ++D + FH    G CSC D+W
Sbjct:   571 IATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
 Identities = 88/238 (36%), Positives = 130/238 (54%)

Query:    60 PKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ 119
             P V H+A MV +L RAG    A  FI+   +E    V   LL  CRIH      + V ++
Sbjct:   555 PSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEK 614

Query:   120 LCELKPLSAENYIMLSNWYAAEAKWD---VVNQA-----------YSWIEFRNKVHVFGT 165
             L EL P +   +++LSN ++A+  +     V Q            Y+ IE     HVF +
Sbjct:   615 LFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTS 674

Query:   166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILALSFGL 224
             GD S P+ + I+ +L+ L  KM     +P+ + +LH V+EE +   +  HSE LA++FGL
Sbjct:   675 GDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGL 734

Query:   225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW 282
             I+T+ G  I + KNLR+   CH   K ISK+ E  I+++D + FHHF+ G CSC D+W
Sbjct:   735 IATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-61
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-48
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	6e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  207 bits (528), Expect = 3e-61
 Identities = 111/299 (37%), Positives = 158/299 (52%), Gaps = 20/299 (6%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-- 58
           ++ GY  HG+  + + LF+ +  +S +  D +TF ++L ACS +GMV +G   F+ +   
Sbjct: 560 LLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618

Query: 59  ---SPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKR 115
              +P + H+A +V +L RAG   EA  FI +  +   P V  ALL  CRIH  V+ G+ 
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678

Query: 116 VIDQLCELKPLSAENYIMLSNWYAAEAKWD--------------VVNQAYSWIEFRNKVH 161
               + EL P S   YI+L N YA   KWD               V+   SW+E + KVH
Sbjct: 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738

Query: 162 VFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALS 221
            F T D S P+ + I   L+   +KM+   L      S+  ++  +     GHSE LA++
Sbjct: 739 AFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIA 798

Query: 222 FGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD 280
           FGLI+T  G  I VTKNL M   CH+  K ISK+V  EI ++D   FHHF+ G CSC D
Sbjct: 799 FGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  171 bits (434), Expect = 1e-48
 Identities = 100/303 (33%), Positives = 158/303 (52%), Gaps = 23/303 (7%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCF------ 54
           +I GY  HG+    + +F  +     +  + +TF AVL AC  +G+ E+GW  F      
Sbjct: 397 LIAGYGNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455

Query: 55  NRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGK 114
           +RI+ P+  H+A M+ +L R GL DEA   I+    +    +  ALL  CRIH  ++ G+
Sbjct: 456 HRIK-PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR 514

Query: 115 RVIDQLCELKPLSAENYIMLSNWYAAEAKWD----VVNQ----------AYSWIEFRNKV 160
              ++L  + P    NY++L N Y +  +      VV            A +WIE + + 
Sbjct: 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574

Query: 161 HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDE-ERKWTQIGHSEILA 219
           H F +GD   P+S  I+ +L  LMK++       + +  L  VDE E K +   HSE LA
Sbjct: 575 HSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLA 634

Query: 220 LSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCR 279
           ++FGLI+T     + +T++ R+   CH   K I+ + + EI+++D S FHHF+ G CSC 
Sbjct: 635 IAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCG 694

Query: 280 DFW 282
           D+W
Sbjct: 695 DYW 697

Length = 697

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 14/98 (14%)

Query: 183 LMKKMEGDSLRPKPDFSLHYVDEERKWTQI-------GHSEILALSFGLISTQVGATIHV 235
           L ++++ + + P+     H VD E              H+E  AL++GL++T++      
Sbjct: 25  LFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHAEKQALAYGLLTTRI------ 78

Query: 236 TKNL-RMRHICHDFAKAISKMVEGEIIIKDPSCFHHFE 272
            K L RM   CH+F + I+K    EII++DPS FHHF+
Sbjct: 79  IKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVE 48
           M+ GY+LHG  E  L L+ E+ + S + ID  TF+ ++   S   ++E
Sbjct: 296 MLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLE 342

Length = 697

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.61
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.52
PF13041	50	PPR_2: PPR repeat family	99.52
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.47
PF13041	50	PPR_2: PPR repeat family	99.46
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.43
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.34
PF12854	34	PPR_1: PPR repeat	99.29
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.08
PF12854	34	PPR_1: PPR repeat	99.06
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.0
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.97
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.96
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.95
KOG4422	625	consensus Uncharacterized conserved protein [Funct	98.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.82
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.82
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.8
PRK12370	553	invasion protein regulator; Provisional	98.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.76
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.71
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.65
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.57
PRK12370	553	invasion protein regulator; Provisional	98.56
KOG1126	638	consensus DNA-binding cell division cycle control	98.54
PRK15359	144	type III secretion system chaperone protein SscB;	98.52
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.47
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.44
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.38
PRK11189	296	lipoprotein NlpI; Provisional	98.35
KOG1126	638	consensus DNA-binding cell division cycle control	98.35
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.29
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.29
PRK11189	296	lipoprotein NlpI; Provisional	98.24
PRK15359	144	type III secretion system chaperone protein SscB;	98.24
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.23
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.21
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.21
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.21
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.19
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.19
PRK14574	822	hmsH outer membrane protein; Provisional	98.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.18
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.15
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.14
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.13
PRK14574	822	hmsH outer membrane protein; Provisional	98.13
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.12
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.11
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.1
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.07
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.06
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.04
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.0
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.0
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.97
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.93
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.92
KOG2003	840	consensus TPR repeat-containing protein [General f	97.92
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.9
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.88
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.88
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.87
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.87
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.85
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.85
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.85
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.69
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.68
KOG1129	478	consensus TPR repeat-containing protein [General f	97.66
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.64
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.6
KOG1129	478	consensus TPR repeat-containing protein [General f	97.59
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.59
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.58
KOG0553	304	consensus TPR repeat-containing protein [General f	97.57
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.55
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.55
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.54
KOG2076	895	consensus RNA polymerase III transcription factor	97.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.49
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.47
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.44
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.44
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.41
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.41
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.41
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.39
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.37
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.3
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.3
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.3
KOG1125	579	consensus TPR repeat-containing protein [General f	97.27
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.25
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.24
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.22
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.21
KOG2003	840	consensus TPR repeat-containing protein [General f	97.19
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.07
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.06
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.02
KOG2076	895	consensus RNA polymerase III transcription factor	96.98
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.98
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.97
KOG1125	579	consensus TPR repeat-containing protein [General f	96.92
PLN02789	320	farnesyltranstransferase	96.9
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.89
PF13371	73	TPR_9: Tetratricopeptide repeat	96.88
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.83
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.81
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.78
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.76
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.74
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.73
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.73
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.73
PF13431	34	TPR_17: Tetratricopeptide repeat	96.71
PF13428	44	TPR_14: Tetratricopeptide repeat	96.67
PF12688	120	TPR_5: Tetratrico peptide repeat	96.65
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.56
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.52
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.51
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.49
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.48
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.47
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	96.45
KOG0553	304	consensus TPR repeat-containing protein [General f	96.43
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.39
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.38
PF13371	73	TPR_9: Tetratricopeptide repeat	96.38
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.33
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.31
PRK10803	263	tol-pal system protein YbgF; Provisional	96.26
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.12
PRK10803	263	tol-pal system protein YbgF; Provisional	96.04
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.02
PRK15331	165	chaperone protein SicA; Provisional	96.01
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.0
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.95
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	95.87
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.85
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.83
PLN02789	320	farnesyltranstransferase	95.78
KOG3060	289	consensus Uncharacterized conserved protein [Funct	95.74
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.72
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	95.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.55
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.55
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.54
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.52
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.46
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	95.43
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.4
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.34
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.3
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.28
PF12688	120	TPR_5: Tetratrico peptide repeat	95.23
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.19
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.16
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.13
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.04
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.99
PRK04841	903	transcriptional regulator MalT; Provisional	94.79
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.74
PF13512	142	TPR_18: Tetratricopeptide repeat	94.67
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.65
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.55
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.51
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	94.09
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.99
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.68
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	93.58
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.51
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	93.44
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.41
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.4
KOG2376	652	consensus Signal recognition particle, subunit Srp	93.19
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.08
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.88
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	92.66
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	92.3
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.28
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	92.21
COG4700	251	Uncharacterized protein conserved in bacteria cont	92.11
PRK04841	903	transcriptional regulator MalT; Provisional	92.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	91.97
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	91.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.67
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.62
PRK11906	458	transcriptional regulator; Provisional	91.5
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.4
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.39
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	91.29
KOG3941	406	consensus Intermediate in Toll signal transduction	91.22
COG3947	361	Response regulator containing CheY-like receiver a	91.16
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	91.08
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	91.05
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.69
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.57
PRK15331	165	chaperone protein SicA; Provisional	90.5
PF13428	44	TPR_14: Tetratricopeptide repeat	90.33
KOG3941	406	consensus Intermediate in Toll signal transduction	89.84
PF13431	34	TPR_17: Tetratricopeptide repeat	89.78
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.9
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	88.79
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.79
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	88.76
smart00299	140	CLH Clathrin heavy chain repeat homology.	88.68
KOG4555	175	consensus TPR repeat-containing protein [Function	88.49
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.72
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	87.65
PF13512	142	TPR_18: Tetratricopeptide repeat	87.64
PRK11906	458	transcriptional regulator; Provisional	86.95
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.89
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.86
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.69
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.61
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.56
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	86.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.19
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	86.09
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	84.12
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.94
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	83.76
KOG4555	175	consensus TPR repeat-containing protein [Function	83.66
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.61
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	83.6
KOG4570	418	consensus Uncharacterized conserved protein [Funct	83.25
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	83.07
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	82.79
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.69
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.47
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	82.29
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	82.24
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.16
PF13929	292	mRNA_stabil: mRNA stabilisation	81.79
KOG4648	536	consensus Uncharacterized conserved protein, conta	81.17
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	81.01

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2e-54  Score=413.11  Aligned_cols=281  Identities=33%  Similarity=0.605  Sum_probs=272.5

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHcc
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARA   75 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~   75 (282)
                      ||.+|+++|+.++|+++|++|.+ .|+.||.+||+++|++|++.|++++|.++|+     .|+.|+..+|++||++|+++
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~  475 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE  475 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence            68999999999999999999999 9999999999999999999999999999998     69999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc------
Q 043686           76 GLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ------  149 (282)
Q Consensus        76 g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~------  149 (282)
                      |++++|.++|++|++.||..+|++||.+|+++|+++.|.++++++.++.|++..+|+.|+++|++.|++++|.+      
T Consensus       476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999998      


Q ss_pred             --------ccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh-hhHHHHH
Q 043686          150 --------AYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL  220 (282)
Q Consensus       150 --------~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~-~~~~l~~  220 (282)
                              .++|++..+.++.|+.+...|++.++.++.++++..+|++.|+.||+....+.++...|+..+. |+|++++
T Consensus       556 ~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~  635 (697)
T PLN03081        556 RKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAI  635 (697)
T ss_pred             HcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHH
Confidence                    5567777788899999999999999999999999999999999999999999999999998888 9999999


Q ss_pred             HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCCCC
Q 043686          221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDFW  282 (282)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (282)
                      +||++.++++.+++|+|+++.|||||+|.|+++++..|+|++||..|||||++|-|||||||
T Consensus       636 a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        636 AFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             HhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=3.9e-50  Score=391.55  Aligned_cols=278  Identities=40%  Similarity=0.630  Sum_probs=267.6

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHcc
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARA   75 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~   75 (282)
                      ||.+|+++|+.++|+++|++|.+ .|+.||.+||+++|.+|++.|++++|.++|+     .|+.|+..+|++||++|+++
T Consensus       560 lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~  638 (857)
T PLN03077        560 LLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA  638 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence            58999999999999999999999 9999999999999999999999999999999     79999999999999999999


Q ss_pred             CChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc------
Q 043686           76 GLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ------  149 (282)
Q Consensus        76 g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~------  149 (282)
                      |++++|++++++|++.||..+|++|+.+|..+|+.+.|+.+.+++.+++|+++.+|..|.+.|+..|++++|.+      
T Consensus       639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~  718 (857)
T PLN03077        639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR  718 (857)
T ss_pred             CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             --------ccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh-hhHHHHH
Q 043686          150 --------AYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG-HSEILAL  220 (282)
Q Consensus       150 --------~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~-~~~~l~~  220 (282)
                              .++|++.++.+|.|+.+...|.+.++.+..++.+..+|++.|+.||+.... ..+...|+..+. |+|+|++
T Consensus       719 ~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~  797 (857)
T PLN03077        719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAI  797 (857)
T ss_pred             HcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHH
Confidence                    678999999999999999999999999999999999999999999987655 446677888888 9999999


Q ss_pred             HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCC
Q 043686          221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD  280 (282)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  280 (282)
                      +||++.++++++++|+|+++.|+|||+|.|+++++..|+|++||..+||||++|.|||||
T Consensus       798 a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        798 AFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             HHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence            999999999999999999999999999999999999999999999999999999999997

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.3e-44  Score=347.00  Aligned_cols=273  Identities=13%  Similarity=0.122  Sum_probs=240.6

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g   76 (282)
                      ||.+|++.|++++|+++|++|.+ .|+.||..+|++||++|++.|++++|.++|+    .|+.||.+||++||++|++.|
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence            57899999999999999999999 9999999999999999999999999999999    899999999999999999999


Q ss_pred             ChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE----LKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++++|.++|++|.   +.||.++||+||.+|++.|++++|.++|++|.+    +.| +..+|++||++|++.|++++|.+
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~e  600 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKE  600 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999996   789999999999999999999999999999973    577 55999999999999999999999


Q ss_pred             ccceeeecCeE------EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHH---HHH
Q 043686          150 AYSWIEFRNKV------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEI---LAL  220 (282)
Q Consensus       150 ~~~~~~~~~~~------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~---l~~  220 (282)
                      +|..|...+..      +.+|.+|++.|+.++|.    ++|++|.+.|+.||..||..+++++++.+.+..+..   .+.
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl----~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~  676 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL----SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR  676 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99988877642      78999999999999998    999999999999999999999999999888763222   233


Q ss_pred             HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCCC
Q 043686          221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF  281 (282)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (282)
                      ..|+.++...++ .++++|+++|++++|.++|++|.+.++. ||...|+.+++|+|+.|++
T Consensus       677 k~G~~pd~~tyn-sLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~LI~gy~k~G~~  735 (1060)
T PLN03218        677 KQGIKLGTVSYS-SLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNALITALCEGNQL  735 (1060)
T ss_pred             HcCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCH
Confidence            445554444555 4899999999999999999999888754 6889999999999998864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6.4e-43  Score=334.01  Aligned_cols=269  Identities=12%  Similarity=0.121  Sum_probs=226.7

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g   76 (282)
                      ||.+|++.|++++|+++|++|.+ .|+.||..||++++.+|++.|..+.+.+++.    .|+.||..+||+||++|+++|
T Consensus       195 li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g  273 (697)
T PLN03081        195 IIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG  273 (697)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence            58899999999999999999999 9999999999888888888888888888877    788888888888888888888


Q ss_pred             ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCC----------------------------
Q 043686           77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPL----------------------------  126 (282)
Q Consensus        77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~----------------------------  126 (282)
                      ++++|.++|++|+ .||+++||+||++|++.|++++|.++|++|.  ++.|+                            
T Consensus       274 ~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~  352 (697)
T PLN03081        274 DIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI  352 (697)
T ss_pred             CHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            8888888888887 7888888888888888888888888888886  34442                            


Q ss_pred             ------ChhHHHHHHHHHHHcCchhhhhcccceeeecCeE--EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCc
Q 043686          127 ------SAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV--HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDF  198 (282)
Q Consensus       127 ------~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t  198 (282)
                            +..+|++||++|+++|++++|.++|+.|...+.+  |+||.+|+++|+.++|.    ++|++|.+.|+.||..|
T Consensus       353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~----~lf~~M~~~g~~Pd~~T  428 (697)
T PLN03081        353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV----EMFERMIAEGVAPNHVT  428 (697)
T ss_pred             HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHH----HHHHHHHHhCCCCCHHH
Confidence                  3456678888999999999999999999888877  89999999999999998    99999999999999999


Q ss_pred             ccccchhhhhhhhhhh----hHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCC
Q 043686          199 SLHYVDEERKWTQIGH----SEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYG  274 (282)
Q Consensus       199 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~  274 (282)
                      |..++.+|.+.+.+..    ...+...+|+.++..+++ .+++.|+++|++++|.++|++|+.    .|+...|+.++.+
T Consensus       429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~-~li~~l~r~G~~~eA~~~~~~~~~----~p~~~~~~~Ll~a  503 (697)
T PLN03081        429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA-CMIELLGREGLLDEAYAMIRRAPF----KPTVNMWAALLTA  503 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH-hHHHHHHhcCCHHHHHHHHHHCCC----CCCHHHHHHHHHH
Confidence            9999999999998862    222334467777766777 599999999999999999998853    3566777777777


Q ss_pred             ccCCCC
Q 043686          275 FCSCRD  280 (282)
Q Consensus       275 ~~~~~~  280 (282)
                      ++..|+
T Consensus       504 ~~~~g~  509 (697)
T PLN03081        504 CRIHKN  509 (697)
T ss_pred             HHHcCC
Confidence            766654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.2e-42  Score=337.20  Aligned_cols=268  Identities=16%  Similarity=0.171  Sum_probs=239.9

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g   76 (282)
                      ||.+|++.|++++|+++|++|.. .|+.||..||+++|++|++.++++.+.+++.    .|+.||..+||+||++|+++|
T Consensus       158 li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g  236 (857)
T PLN03077        158 LVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG  236 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence            58999999999999999999999 9999999999999999999999999999998    899999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCC----------------------------
Q 043686           77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPL----------------------------  126 (282)
Q Consensus        77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~----------------------------  126 (282)
                      ++++|.++|++|+ .||+++||+||++|++.|++++|.++|++|.  ++.|+                            
T Consensus       237 ~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~  315 (857)
T PLN03077        237 DVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV  315 (857)
T ss_pred             CHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            9999999999999 8999999999999999999999999999997  34554                            


Q ss_pred             ------ChhHHHHHHHHHHHcCchhhhhcccceeeecCeE--EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCc
Q 043686          127 ------SAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV--HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDF  198 (282)
Q Consensus       127 ------~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t  198 (282)
                            ++.+||+|+++|+++|++++|.++|+.|+..+.+  ++++.+|++.|+.++|.    ++|++|++.|+.||..|
T Consensus       316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~----~lf~~M~~~g~~Pd~~t  391 (857)
T PLN03077        316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL----ETYALMEQDNVSPDEIT  391 (857)
T ss_pred             HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH----HHHHHHHHhCCCCCcee
Confidence                  5678888999999999999999999999988777  89999999999999998    99999999999999999


Q ss_pred             ccccchhhhhhhhhhhhH---HHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCc
Q 043686          199 SLHYVDEERKWTQIGHSE---ILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGF  275 (282)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~  275 (282)
                      |..++.++++.+.+....   ..+...|+.+....++ .++++|++||++++|.++|++|.+++++     .|+.++.|+
T Consensus       392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n-~Li~~y~k~g~~~~A~~vf~~m~~~d~v-----s~~~mi~~~  465 (857)
T PLN03077        392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN-ALIEMYSKCKCIDKALEVFHNIPEKDVI-----SWTSIIAGL  465 (857)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH-HHHHHHHHcCCHHHHHHHHHhCCCCCee-----eHHHHHHHH
Confidence            999999999988886222   2345566665555555 4899999999999999999999887554     678888888


Q ss_pred             cCCCC
Q 043686          276 CSCRD  280 (282)
Q Consensus       276 ~~~~~  280 (282)
                      |+.|+
T Consensus       466 ~~~g~  470 (857)
T PLN03077        466 RLNNR  470 (857)
T ss_pred             HHCCC
Confidence            88775

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.8e-43  Score=338.70  Aligned_cols=273  Identities=15%  Similarity=0.187  Sum_probs=246.3

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccC
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g   76 (282)
                      ||.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++|+    .|+.||.+||++||.+|++.|
T Consensus       478 LI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G  556 (1060)
T PLN03218        478 LISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG  556 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            58999999999999999999999 9999999999999999999999999999998    899999999999999999999


Q ss_pred             ChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH-----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE--LKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++++|.++|++|.     +.||.++||+||.+|++.|++++|.++|++|.+  +.| ++.+|++||++|++.|++++|.+
T Consensus       557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~  635 (1060)
T PLN03218        557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALS  635 (1060)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999994     689999999999999999999999999999995  455 66999999999999999999999


Q ss_pred             ccceeeecCeE------EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHH---HH
Q 043686          150 AYSWIEFRNKV------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEIL---AL  220 (282)
Q Consensus       150 ~~~~~~~~~~~------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l---~~  220 (282)
                      +|..|...+..      ++++.+|++.|+.++|.    .+|++|.+.|+.||..+|..++.++++.+.+..+..+   +.
T Consensus       636 lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~----~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF----EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99998876543      78999999999999998    9999999999999999999999999999988733332   23


Q ss_pred             HhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCCC
Q 043686          221 SFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRDF  281 (282)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (282)
                      ..|+.++...++ .++++|+++|++++|.++|++|...|+. ||..+|+.++.++|+.|++
T Consensus       712 ~~g~~PdvvtyN-~LI~gy~k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        712 SIKLRPTVSTMN-ALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERKDDA  770 (1060)
T ss_pred             HcCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCH
Confidence            345555555555 4899999999999999999999998865 7999999999999998864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.61  E-value=3.1e-15  Score=133.83  Aligned_cols=255  Identities=8%  Similarity=0.069  Sum_probs=152.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC---HHHHHHHHHHHhcCCCHHHHHHHhh--ccCC-CChhHHHHHHHHHHccC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID---PLTFAAVLHACSTAGMVEEGWLCFN--RIRS-PKVTHHALMVSVLARAG   76 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~---~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~-p~~~~~~~li~~~~~~g   76 (282)
                      ..|.+.|++++|..+++.+.. .+-.++   ..++..+...+.+.|++++|..+|+  .... ++..+++.++..|.+.|
T Consensus        77 ~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g  155 (389)
T PRK11788         77 NLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK  155 (389)
T ss_pred             HHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc
Confidence            345667777777777777665 432222   2345666667777777777777777  2222 34566777777777777


Q ss_pred             ChHHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH-MERY------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++++|.+.|+.+. ..|+      ...|..+...+.+.|++++|.+.|+++.+..|++...+..+...|.+.|++++|.+
T Consensus       156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  235 (389)
T PRK11788        156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE  235 (389)
T ss_pred             hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777764 2222      12345566667777777777777777777777666677777788888888888877


Q ss_pred             ccceeeecCe------EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhH-HHHHHh
Q 043686          150 AYSWIEFRNK------VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSE-ILALSF  222 (282)
Q Consensus       150 ~~~~~~~~~~------~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~-~l~~~~  222 (282)
                      .+..+...+.      .+.+...+...|+.++|.    ..++++.+.  .|+...+..+...+.+.+....+. .+....
T Consensus       236 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~----~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l  309 (389)
T PRK11788        236 ALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL----EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQL  309 (389)
T ss_pred             HHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            6555442211      134455667778888877    666666554  466544444455555555544222 222222


Q ss_pred             hhccCCCCCeEEEeecccc---ccchHHHHHHHHHhhcceEEeecCC
Q 043686          223 GLISTQVGATIHVTKNLRM---RHICHDFAKAISKMVEGEIIIKDPS  266 (282)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~  266 (282)
                      ...++..... .++..+..   .|+..+|..+|++|.++++. +|+.
T Consensus       310 ~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-~~p~  354 (389)
T PRK11788        310 RRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLK-RKPR  354 (389)
T ss_pred             HhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHh-CCCC
Confidence            2222221111 12333332   45788888888888877654 4554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.52  E-value=5.7e-14  Score=125.67  Aligned_cols=259  Identities=14%  Similarity=0.077  Sum_probs=184.5

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccC--CC---ChhHHHHHHHHHHccC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIR--SP---KVTHHALMVSVLARAG   76 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~--~p---~~~~~~~li~~~~~~g   76 (282)
                      +...|++++|++.|.++.+ .  .|+ ..++..+...+...|++++|..+++  ...  .+   ....+..+...|.+.|
T Consensus        45 ~~~~~~~~~A~~~~~~al~-~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLK-V--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHhcCChHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            4577999999999999988 3  454 4588889899999999999999998  221  11   1256889999999999


Q ss_pred             ChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-----hHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-----ENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-----~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++++|.++|+++. .. ++..+++.++..|.+.|++++|.+.++.+.+..|.+.     ..+..+...|.+.|++++|..
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            9999999999986 33 4588999999999999999999999999997766432     245678888999999999998


Q ss_pred             ccceeeecC--eE---EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC--Ccccccchhhhhhhhhh-hhHHHHHH
Q 043686          150 AYSWIEFRN--KV---HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP--DFSLHYVDEERKWTQIG-HSEILALS  221 (282)
Q Consensus       150 ~~~~~~~~~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~--~t~~~~~~~~~~~~~~~-~~~~l~~~  221 (282)
                      .+.......  ..   ..+...+.+.|+.++|.    .+++++.+.+  |+.  .++..+...+.+.+... ....+...
T Consensus       202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~----~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        202 LLKKALAADPQCVRASILLGDLALAQGDYAAAI----EALERVEEQD--PEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            666543211  11   23445677899999998    7777777543  332  33444555555655555 22223333


Q ss_pred             hhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCcc
Q 043686          222 FGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFC  276 (282)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~  276 (282)
                      ....+..... ..+...+.+.|+.+.|.++++++.+..   |+...++++..+.+
T Consensus       276 ~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~---P~~~~~~~l~~~~~  326 (389)
T PRK11788        276 LEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRH---PSLRGFHRLLDYHL  326 (389)
T ss_pred             HHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhC---cCHHHHHHHHHHhh
Confidence            3333322222 235677889999999999999887653   34444554444433

>PF13041 PPR_2: PPR repeat family

Probab=99.52  E-value=2.2e-14  Score=89.65  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             CChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHh
Q 043686           60 PKVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRI  106 (282)
Q Consensus        60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~  106 (282)
                      ||+++||+||++|++.|++++|.++|++|.   +.||..||++||++|||
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            556666666666666666666666666654   55666666666666553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.47  E-value=3.7e-13  Score=131.51  Aligned_cols=248  Identities=10%  Similarity=0.040  Sum_probs=135.6

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      .|.+.|+.++|..+|.++.. .+ ..+...+..+...+.+.|++++|.++++   ...+.+..+|..+...|.+.|++++
T Consensus       542 ~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  619 (899)
T TIGR02917       542 LYLRTGNEEEAVAWLEKAAE-LN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK  619 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHH-hC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence            34445555555555555544 21 1233445555555666666666666665   2233345566666666666666666


Q ss_pred             HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC
Q 043686           81 ARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN  158 (282)
Q Consensus        81 A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~  158 (282)
                      |.+.|+++. ..| +...|..+...|.+.|++++|...|+++.+..|++..++..+...|.+.|++++|...++.+....
T Consensus       620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  699 (899)
T TIGR02917       620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH  699 (899)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            666666653 233 355666666666666666666666666666666666666666666777777766666554443222


Q ss_pred             eE-----EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhh-hHHHHHHhhhccCCCCCe
Q 043686          159 KV-----HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGH-SEILALSFGLISTQVGAT  232 (282)
Q Consensus       159 ~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~  232 (282)
                      ..     ..+...+...|+.++|.    ..|+++.+.+  |+..++..+...+.+.+.... ...+.......+......
T Consensus       700 ~~~~~~~~~~~~~~~~~g~~~~A~----~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~  773 (899)
T TIGR02917       700 PKAALGFELEGDLYLRQKDYPAAI----QAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR  773 (899)
T ss_pred             cCChHHHHHHHHHHHHCCCHHHHH----HHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            11     12223345667777776    6666665543  444444444444444444431 112222222222211111


Q ss_pred             EEEeeccccccchHHHHHHHHHhhcce
Q 043686          233 IHVTKNLRMRHICHDFAKAISKMVEGE  259 (282)
Q Consensus       233 ~~~~~~~~~~g~~~~a~~~~~~m~~~~  259 (282)
                      ..+...+.+.|+.+.|.+.|+++....
T Consensus       774 ~~la~~~~~~g~~~~A~~~~~~~~~~~  800 (899)
T TIGR02917       774 TALAELYLAQKDYDKAIKHYRTVVKKA  800 (899)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence            123445667888888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13041 PPR_2: PPR repeat family

Probab=99.46  E-value=1.3e-13  Score=86.14  Aligned_cols=48  Identities=15%  Similarity=0.202  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHH
Q 043686           92 RYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        92 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~  140 (282)
                      ||+++||+||++|++.|++++|.++|++|.  ++.| |..||++||++|+|
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P-~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKP-DSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcC
Confidence            899999999999999999999999999999  5778 66999999999985

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.43  E-value=1.1e-12  Score=128.22  Aligned_cols=268  Identities=9%  Similarity=-0.050  Sum_probs=176.8

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ...|.+.|++++|++.|+++.+ .. +.+...+..+..++.+.|+.++|...++  ....| +..++..+...+.+.|++
T Consensus       608 ~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  685 (899)
T TIGR02917       608 GRAQLAAGDLNKAVSSFKKLLA-LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT  685 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence            4567888999999999999876 32 2345677888888888999999999998  44555 477888889999999999


Q ss_pred             HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           79 DEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        79 ~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                      ++|.++++.+.  ..++..+|..+...|.+.|++++|.+.|+++....|++ .++..+..+|.+.|++++|...+.....
T Consensus       686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999998876  33457788888888888999999999999888888866 6777888888888888888874433221


Q ss_pred             cC----eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-CcccccchhhhhhhhhhhhHHHHHHhhhccCCCC
Q 043686          157 RN----KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIGHSEILALSFGLISTQVG  230 (282)
Q Consensus       157 ~~----~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  230 (282)
                      ..    .+ +.+...+...|+.++|.    .+|+++.+..  |+. ..+..+...+.+.+.-.....+.....+.+..+.
T Consensus       765 ~~~~~~~~~~~la~~~~~~g~~~~A~----~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~  838 (899)
T TIGR02917       765 THPNDAVLRTALAELYLAQKDYDKAI----KHYRTVVKKA--PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPA  838 (899)
T ss_pred             hCCCCHHHHHHHHHHHHHCcCHHHHH----HHHHHHHHhC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcH
Confidence            11    11 33334456678888887    7777776543  443 3333322222222221111122222333333222


Q ss_pred             CeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccCCCC
Q 043686          231 ATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCSCRD  280 (282)
Q Consensus       231 ~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  280 (282)
                      ....+...+...|+.+.|.++++++.+.+.  .++..+.+....++..|+
T Consensus       839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~  886 (899)
T TIGR02917       839 ILDTLGWLLVEKGEADRALPLLRKAVNIAP--EAAAIRYHLALALLATGR  886 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCC
Confidence            211223445677888888888888887654  255666555555655554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.34  E-value=6.4e-12  Score=92.42  Aligned_cols=98  Identities=48%  Similarity=0.710  Sum_probs=83.9

Q ss_pred             EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhh--------hhhhh-hhHHHHHHhhhccCCCCC
Q 043686          161 HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERK--------WTQIG-HSEILALSFGLISTQVGA  231 (282)
Q Consensus       161 ~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~--------~~~~~-~~~~l~~~~~~~~~~~~~  231 (282)
                      +.++++...+++.        .+..+|...|+.|+.....+.+....+        ...+. |+|+++++||++..    
T Consensus         9 h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~----   76 (116)
T PF14432_consen    9 HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT----   76 (116)
T ss_pred             EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce----
Confidence            7899999999886        566788888999998777665555443        44556 99999999999876    


Q ss_pred             eEEEeecc-ccccchHHHHHHHHHhhcceEEeecCCcccccc
Q 043686          232 TIHVTKNL-RMRHICHDFAKAISKMVEGEIIIKDPSCFHHFE  272 (282)
Q Consensus       232 ~~~~~~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~  272 (282)
                        ++++++ +.|+||+++.+++++...|.++++|+.+||||+
T Consensus        77 --~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   77 --RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             --eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence              588998 999999999999999999999999999999985

>PF12854 PPR_1: PPR repeat

Probab=99.29  E-value=4.7e-12  Score=71.95  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=29.4

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH   89 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~   89 (282)
                      .|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4788888899999999999999999999888885

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=5.1e-10  Score=97.05  Aligned_cols=150  Identities=14%  Similarity=0.161  Sum_probs=121.5

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHH
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      ||.|+|+-...++|.+++++-.. ...+.+..+||.+|.+-+-.-.-+-.-+.......||..|+|+++++.++.|+++.
T Consensus       213 mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~  291 (625)
T KOG4422|consen  213 MIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFED  291 (625)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHH
Confidence            68999999999999999999998 88899999999999986654443333333338899999999999999999999987


Q ss_pred             HHH----HHHhcC---CCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHH----h-----cCCCChhHHHHHHHHHHHcCc
Q 043686           81 ARI----FIQEYH---MERYPEVLRALLEGCRIHVQVKT-GKRVIDQLC----E-----LKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        81 A~~----l~~~m~---~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~-----~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      |.+    ++.+|+   ++|...+|..+|.-+++.++..+ |..++.++.    |     ..|++...|.+.++.+....+
T Consensus       292 ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d  371 (625)
T KOG4422|consen  292 ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRD  371 (625)
T ss_pred             HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhh
Confidence            665    455676   89999999999999999988755 666666665    2     345555677888888888888


Q ss_pred             hhhhhccc
Q 043686          144 WDVVNQAY  151 (282)
Q Consensus       144 ~~~A~~~~  151 (282)
                      .+-|.++.
T Consensus       372 ~~LA~~v~  379 (625)
T KOG4422|consen  372 LELAYQVH  379 (625)
T ss_pred             HHHHHHHH
Confidence            88888843

>PF12854 PPR_1: PPR repeat

Probab=99.06  E-value=1.8e-10  Score=65.39  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           90 MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        90 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      +.||++|||+||.+||+.|++++|.++|++|+
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            58999999999999999999999999999984

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.02  E-value=2.9e-09  Score=101.11  Aligned_cols=242  Identities=10%  Similarity=-0.020  Sum_probs=166.8

Q ss_pred             CChHHHHHHHHHhHHhCC-CCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHH
Q 043686            9 GQRELGLSLFSELEKKSS-IEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g-~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      +++++|++.|++..+ .+ ..|+. ..|..+-..+...|++++|...++  ..+.|+ ...|..+...|...|++++|..
T Consensus       308 ~~y~~A~~~~~~al~-~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       308 ESYEEAARAFEKALD-LGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            678999999999887 54 34543 466667777888999999999999  666776 5688899999999999999999


Q ss_pred             HHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec----
Q 043686           84 FIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR----  157 (282)
Q Consensus        84 l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~----  157 (282)
                      .|++.. ..|+ ..+|..+...|...|++++|.+.|++..++.|++...+..+...|.+.|++++|...+......    
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999854 5564 7889999999999999999999999999999998888999999999999999999866543221    


Q ss_pred             CeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCC-cccc---cch---h-hhhhhhhhhhH-HHHHHhhhccC
Q 043686          158 NKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPD-FSLH---YVD---E-ERKWTQIGHSE-ILALSFGLIST  227 (282)
Q Consensus       158 ~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~-t~~~---~~~---~-~~~~~~~~~~~-~l~~~~~~~~~  227 (282)
                      ..+ +.+-..+...|+.++|.    ..|++-.+.  .|+.. ++..   .+.   . +...+.+..+. .+.....+.+.
T Consensus       467 ~~~~~~lg~~~~~~g~~~~A~----~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~  540 (615)
T TIGR00990       467 PDVYNYYGELLLDQNKFDEAI----EKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE  540 (615)
T ss_pred             hHHHHHHHHHHHHccCHHHHH----HHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            111 23334456678888888    555554432  23321 1111   110   0 11112222111 12222233222


Q ss_pred             CCCCeEEEeeccccccchHHHHHHHHHhhc
Q 043686          228 QVGATIHVTKNLRMRHICHDFAKAISKMVE  257 (282)
Q Consensus       228 ~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~  257 (282)
                      .......+...+...|+.++|.++|++..+
T Consensus       541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       541 CDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            222222346667799999999999988754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.00  E-value=3e-09  Score=101.50  Aligned_cols=245  Identities=8%  Similarity=-0.059  Sum_probs=123.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .+.+.|++++|+..|++...   +.|+ ...+..+..++...|+.++|...++  ....|+ ...+..+ ..+.+.|+++
T Consensus       119 ~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~  194 (656)
T PRK15174        119 VLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLP  194 (656)
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHH
Confidence            34555666666666666554   3343 2344555555666666666666555  223332 2222222 2355566666


Q ss_pred             HHHHHHHhcC-CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh----hhcccc
Q 043686           80 EARIFIQEYH-ME--RYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV----VNQAYS  152 (282)
Q Consensus        80 ~A~~l~~~m~-~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~----A~~~~~  152 (282)
                      +|.+.++.+. ..  ++...+..+...+.+.|++++|.+.|+++.+..|+++..+..|...|...|++++    |...+.
T Consensus       195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~  274 (656)
T PRK15174        195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR  274 (656)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence            6666666543 11  2233344445566777777777777777777777777777777777777777775    444332


Q ss_pred             ee----eecCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcc-cccchhhhhhhhhh-hhHHHHHHhhhc
Q 043686          153 WI----EFRNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFS-LHYVDEERKWTQIG-HSEILALSFGLI  225 (282)
Q Consensus       153 ~~----~~~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~-~~~~~~~~~~~~~~-~~~~l~~~~~~~  225 (282)
                      ..    |..... ..+-..+...|+.++|.    ..+++..+  ..|+.... ..+...+.+.+... ....+.......
T Consensus       275 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~----~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        275 HALQFNSDNVRIVTLYADALIRTGQNEKAI----PLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHCCCHHHHH----HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            21    111001 22333455667777776    44444443  24554322 22222223333332 111111111111


Q ss_pred             cCCCCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686          226 STQVGATIHVTKNLRMRHICHDFAKAISKMVEG  258 (282)
Q Consensus       226 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~  258 (282)
                      +............+...|+.++|.+.|++....
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            111111111223466788888888888876654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.97  E-value=4.6e-08  Score=80.11  Aligned_cols=144  Identities=14%  Similarity=0.143  Sum_probs=115.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ..|...|++++|.+.|++..+ .  .|+ ...+..+...+...|++++|.+.++  ....| +...+..+...|...|++
T Consensus        39 ~~~~~~~~~~~A~~~~~~~l~-~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        39 LGYLEQGDLEVAKENLDKALE-H--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH-h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence            457788999999999999876 3  344 5677778888899999999999998  33344 466788888999999999


Q ss_pred             HHHHHHHHhcC-C--CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           79 DEARIFIQEYH-M--ER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        79 ~~A~~l~~~m~-~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++|.+.|++.. .  .| +...|..+...+...|++++|.+.|.+.....|++...+..+...|...|++++|..
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            99999998864 1  12 355777788889999999999999999998888887888888888888888777743

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.96  E-value=1.1e-08  Score=97.74  Aligned_cols=173  Identities=8%  Similarity=-0.052  Sum_probs=122.3

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH-
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE-   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~-   80 (282)
                      +.+.|++++|+.+++++.. ..-.++...+..+..++.+.|+.++|...++  ....| +...+..+...|.+.|+.++ 
T Consensus       187 l~~~g~~~eA~~~~~~~l~-~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA  265 (656)
T PRK15174        187 FLNKSRLPEDHDLARALLP-FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA  265 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHh-cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence            5567777778777777665 3323344455555667778888888888888  44445 36677778888888888885 


Q ss_pred             ---HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686           81 ---ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus        81 ---A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                         |...|++.. ..|+ ..++..+...+.+.|++++|...+++.....|+++..+..+...|.+.|++++|...+....
T Consensus       266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al  345 (656)
T PRK15174        266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA  345 (656)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence               788887754 5665 67888888888888888888888888888888887788888888888888888888655433


Q ss_pred             ecCeEE-----EEecCCCCCCChHHHHH
Q 043686          156 FRNKVH-----VFGTGDVSCPRSEGIFW  178 (282)
Q Consensus       156 ~~~~~~-----~~i~~~~~~~~~~~a~~  178 (282)
                      ..+--+     .....+...|+.++|..
T Consensus       346 ~~~P~~~~~~~~~a~al~~~G~~deA~~  373 (656)
T PRK15174        346 REKGVTSKWNRYAAAALLQAGKTSEAES  373 (656)
T ss_pred             HhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence            211111     11223566777777773

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.96  E-value=6.3e-09  Score=94.16  Aligned_cols=184  Identities=13%  Similarity=0.131  Sum_probs=152.7

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .|-..|+++-|++.|++-.+   +.|+- ..|+.|-+|+-..|++.+|.+.+.  ..+.|+ ..+.+.|-..|...|.++
T Consensus       295 iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e  371 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE  371 (966)
T ss_pred             EEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence            46678999999999999877   77875 589999999999999999999999  667776 778999999999999999


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce-eee
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW-IEF  156 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~-~~~  156 (282)
                      +|.++|...- +.|. ...+|.|-+.|-+.|++++|...|++...+.|.-..+|+.+-..|-..|+++.|..-... +..
T Consensus       372 ~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  372 EATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             HHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            9999999854 7787 778999999999999999999999999999998889999999999999999999883332 222


Q ss_pred             cCeE----EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686          157 RNKV----HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP  196 (282)
Q Consensus       157 ~~~~----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~  196 (282)
                      +...    +.+-+.|...|...+|+    .-+++-.  .++||-
T Consensus       452 nPt~AeAhsNLasi~kDsGni~~AI----~sY~~aL--klkPDf  489 (966)
T KOG4626|consen  452 NPTFAEAHSNLASIYKDSGNIPEAI----QSYRTAL--KLKPDF  489 (966)
T ss_pred             CcHHHHHHhhHHHHhhccCCcHHHH----HHHHHHH--ccCCCC
Confidence            2222    45667788899999887    4444333  356664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.95  E-value=4.4e-09  Score=90.10  Aligned_cols=150  Identities=13%  Similarity=0.114  Sum_probs=92.5

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF   78 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~   78 (282)
                      +..+.+.|+++++.+++++........++...|..+-..+.+.|+.++|.+.++  ....|+ ....+.++..+...|+.
T Consensus       117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~  196 (280)
T PF13429_consen  117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY  196 (280)
T ss_dssp             -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh
Confidence            345667777888888887765512344566666777777777888888888887  556664 66677778888888888


Q ss_pred             HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           79 DEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        79 ~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +++.++++...  ..+|...|..+..+|...|+.++|...|++.....|+|+.....+.+++...|+.++|..+.
T Consensus       197 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  197 DEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            87777776653  23345567777777888888888888888877777777777777888888888877776643

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=2.7e-08  Score=86.56  Aligned_cols=172  Identities=12%  Similarity=0.146  Sum_probs=128.0

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH--HHhcCCCHH--HHHHHhh---------------------ccCC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH--ACSTAGMVE--EGWLCFN---------------------RIRS   59 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~--a~~~~g~~~--~a~~l~~---------------------~g~~   59 (282)
                      ....|.+.++.-+|+.|+. +|+.-....--.|+.  .|-++.++-  +=.+...                     ....
T Consensus       125 mIS~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~  203 (625)
T KOG4422|consen  125 MISSREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL  203 (625)
T ss_pred             HHhhcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence            4567899999999999999 988777665555554  233333321  1111111                     2234


Q ss_pred             C-ChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHH
Q 043686           60 P-KVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIM  133 (282)
Q Consensus        60 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~  133 (282)
                      | +..||.+||.++||--..+.|.+++++-.   .+-+..+||.+|.+-.-.    ...++..+|.  ++.| |..|+|+
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P-nl~TfNa  278 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP-NLFTFNA  278 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC-chHhHHH
Confidence            4 67899999999999999999999999864   677889999999874322    2378899998  5788 6699999


Q ss_pred             HHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhh
Q 043686          134 LSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQ  211 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~  211 (282)
                      +++.-.+.|+++.|                             ...+..++.+|++-|+.|...+|..++...++++.
T Consensus       279 lL~c~akfg~F~~a-----------------------------r~aalqil~EmKeiGVePsLsSyh~iik~f~re~d  327 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDA-----------------------------RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESD  327 (625)
T ss_pred             HHHHHHHhcchHHH-----------------------------HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCC
Confidence            99999999998777                             22233899999999999999999877766555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.90  E-value=5.7e-08  Score=92.37  Aligned_cols=147  Identities=10%  Similarity=-0.028  Sum_probs=128.8

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .+...|++++|+..|++..+   ..|+ ..+|..+...+...|++++|...|+  ....|+ ..+|..+...|...|+++
T Consensus       340 ~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~  416 (615)
T TIGR00990       340 FKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA  416 (615)
T ss_pred             HHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            45678999999999999877   5676 4478888888999999999999999  555564 788999999999999999


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +|.+.|++.. ..|+ ...|..+...+.+.|++++|...|++..+..|+++..|+.+...|...|++++|...+..
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  492 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT  492 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999864 6675 778888999999999999999999999999999999999999999999999999985444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.86  E-value=1.5e-08  Score=91.81  Aligned_cols=243  Identities=14%  Similarity=0.077  Sum_probs=167.0

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHH-HHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHAL-MVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~-li~~~~~~g~~~   79 (282)
                      .+-..|+.++|+.+|+.|.+   ++|+- ..|..+-.++...|+.+.|.+.|.  ..+.|+.+...+ +-..+-..|+++
T Consensus       125 ~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~  201 (966)
T KOG4626|consen  125 ILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLE  201 (966)
T ss_pred             HHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccc
Confidence            45578999999999999998   77865 488899999999999999999998  778887665543 444444579999


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc----e
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS----W  153 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~----~  153 (282)
                      +|...+.+.. .+|. .+.|+.|-..+-..|+...|..-|++...++|.-...|..|-..|...+.+|+|.....    .
T Consensus       202 ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l  281 (966)
T KOG4626|consen  202 EAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL  281 (966)
T ss_pred             hhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence            9999988743 5888 78999999999999999999999999999999888999999999999999999987222    1


Q ss_pred             eeecCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-CcccccchhhhhhhhhhhhH-HHHHHhhhccCCCC
Q 043686          154 IEFRNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIGHSE-ILALSFGLISTQVG  230 (282)
Q Consensus       154 ~~~~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~  230 (282)
                      -+....+ -.+-.-|-..|..+-|+    .-+++-.+  ..|+- ..|..+..+....|.+..++ .-..+..+.++-..
T Consensus       282 rpn~A~a~gNla~iYyeqG~ldlAI----~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had  355 (966)
T KOG4626|consen  282 RPNHAVAHGNLACIYYEQGLLDLAI----DTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD  355 (966)
T ss_pred             CCcchhhccceEEEEeccccHHHHH----HHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence            2222222 23444567788888887    55555443  34442 33444444444444443111 11222222222221


Q ss_pred             CeEEEeeccccccchHHHHHHHHHh
Q 043686          231 ATIHVTKNLRMRHICHDFAKAISKM  255 (282)
Q Consensus       231 ~~~~~~~~~~~~g~~~~a~~~~~~m  255 (282)
                      ..-.+-+.++..|.++.|..++..-
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~a  380 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKA  380 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHH
Confidence            1112333455666666666666544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.82  E-value=1.9e-07  Score=92.15  Aligned_cols=141  Identities=10%  Similarity=-0.043  Sum_probs=69.4

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~   82 (282)
                      .+.|++++|+..|+++..   ..|+...+..+..++.+.|++++|...++  ....|+ ...+..+.....+.|++++|.
T Consensus       520 ~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        520 YQVEDYATALAAWQKISL---HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHCCCHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence            355666666666666543   23333344444445555555555555555  222232 112222222233335555555


Q ss_pred             HHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           83 IFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        83 ~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ..|++.. ..|+...|..+...+.+.|+.++|...|++..+..|+++..++.+...+...|+.++|..
T Consensus       597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~  664 (987)
T PRK09782        597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE  664 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            5555432 445545555555555555555555555555555555555555555555555555555544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.82  E-value=3.4e-07  Score=74.90  Aligned_cols=146  Identities=16%  Similarity=0.084  Sum_probs=120.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--cc--CCC-ChhHHHHHHHHHHccCC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RI--RSP-KVTHHALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g--~~p-~~~~~~~li~~~~~~g~   77 (282)
                      ..|...|++++|.+.|++..+ .. +.+...+..+...+...|++++|.+.++  ..  ..| ....+..+...|.+.|+
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  150 (234)
T TIGR02521        73 LYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD  150 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence            457788999999999999876 32 2345677778888999999999999999  11  122 34577788899999999


Q ss_pred             hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +++|.+.|++.. ..|+ ...|..+...+.+.|++++|.+.+++.....|+++..+..+...+...|+.++|...
T Consensus       151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            999999999854 4454 678889999999999999999999999987887778888899999999998888654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.80  E-value=7.7e-08  Score=94.86  Aligned_cols=148  Identities=7%  Similarity=-0.053  Sum_probs=126.8

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      .+.+.|+.++|...|++..+ ..  |+.. .+..+.....+.|++++|...++  ..+.|+...|..+...+.+.|+.++
T Consensus       551 all~~Gd~~eA~~~l~qAL~-l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQ-RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH
Confidence            46789999999999999887 43  5443 33334445556799999999999  6677888899999999999999999


Q ss_pred             HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686           81 ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus        81 A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      |++.|++.. ..|+ ...++.+-..+...|+.++|...|++..+..|+++..+..+..+|...|++++|+..++..
T Consensus       628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999865 6776 7788888889999999999999999999999999999999999999999999999866554

>PRK12370 invasion protein regulator; Provisional

Probab=98.79  E-value=1.1e-07  Score=89.15  Aligned_cols=176  Identities=13%  Similarity=0.037  Sum_probs=130.4

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      .+++++|...+++..+   +.|+ ...+..+-..+...|++++|...|+  ..+.|+ ...+..+...|...|+.++|..
T Consensus       317 ~~~~~~A~~~~~~Al~---ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~  393 (553)
T PRK12370        317 QNAMIKAKEHAIKATE---LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQ  393 (553)
T ss_pred             chHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4568999999999887   5564 4566667667888999999999999  667775 6678889999999999999999


Q ss_pred             HHHhcC-CCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE
Q 043686           84 FIQEYH-MERYP-EVLRALLEGCRIHVQVKTGKRVIDQLCEL-KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV  160 (282)
Q Consensus        84 l~~~m~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~  160 (282)
                      .+++.. ..|+. ..+..+...+...|++++|.+.+++.... .|+++..+..+...|...|+.++|...+.........
T Consensus       394 ~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~  473 (553)
T PRK12370        394 TINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT  473 (553)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence            999964 67763 34444555677789999999999998865 4667677888999999999999999976654332211


Q ss_pred             -----EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          161 -----HVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       161 -----~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                           +.+...+...|  +++...++.+++...
T Consensus       474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~  504 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQ  504 (553)
T ss_pred             hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence                 22222334444  466655556555544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.76  E-value=1.1e-07  Score=96.45  Aligned_cols=147  Identities=8%  Similarity=0.038  Sum_probs=95.8

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHH--------
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSV--------   71 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~--------   71 (282)
                      .+.+.|++++|+..|++..+   ..|+ ...+..+-..+...|+.++|.+.|+  ....|+ ...+..+...        
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQ---VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence            35678999999999999887   3454 4566677788999999999999999  444454 3344434333        


Q ss_pred             ----------------------------------HHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686           72 ----------------------------------LARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        72 ----------------------------------~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~  115 (282)
                                                        +...|++++|.+.|++.. ..|+ ...+..+...|.+.|++++|..
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                                              344566666666666643 4554 4556666666777777777777


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      .+++.....|+++..+..+...+.+.|+.++|...+..
T Consensus       517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~  554 (1157)
T PRK11447        517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNT  554 (1157)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            77766666666655554444445555555555554433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.76  E-value=2.8e-08  Score=93.05  Aligned_cols=180  Identities=12%  Similarity=0.087  Sum_probs=117.8

Q ss_pred             HHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----------------------------ccCCCChhHHHH
Q 043686           16 SLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----------------------------RIRSPKVTHHAL   67 (282)
Q Consensus        16 ~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----------------------------~g~~p~~~~~~~   67 (282)
                      .++..|+. .|+.||.+||.++|.-||..|+++.|. +|.                            ..-.|...||++
T Consensus        11 nfla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~   88 (1088)
T KOG4318|consen   11 NFLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTN   88 (1088)
T ss_pred             hHHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHH
Confidence            46778888 999999999999999999999999888 665                            122455678888


Q ss_pred             HHHHHHccCChH---HHHHHHHhcC--------------------C----CCCHHHHHHHHHHHHhcCChhHHHHHHH--
Q 043686           68 MVSVLARAGLFD---EARIFIQEYH--------------------M----ERYPEVLRALLEGCRIHVQVKTGKRVID--  118 (282)
Q Consensus        68 li~~~~~~g~~~---~A~~l~~~m~--------------------~----~p~~~~~~~li~~~~~~g~~~~A~~~~~--  118 (282)
                      |..+|...||+.   ..++.+....                    +    -||..   +.|.-....|.++.+.++..  
T Consensus        89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~  165 (1088)
T KOG4318|consen   89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV  165 (1088)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence            888888888754   3333111110                    1    12321   12222233333444443331  


Q ss_pred             --------------HHH--------------h-c-CCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE------EE
Q 043686          119 --------------QLC--------------E-L-KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV------HV  162 (282)
Q Consensus       119 --------------~m~--------------~-~-~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~------~~  162 (282)
                                    ++.              . . .| ++.+|.++++.-.-+|+++-|......|...+..      +.
T Consensus       166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~-~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp  244 (1088)
T KOG4318|consen  166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAP-TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP  244 (1088)
T ss_pred             CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCC-ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence                          111              1 1 24 4588889999999999999999988888777655      34


Q ss_pred             EecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhh
Q 043686          163 FGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERK  208 (282)
Q Consensus       163 ~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~  208 (282)
                      ++.|   .+....    ++.++..|++.|+.|++.|+.-.+..+.+
T Consensus       245 Ll~g---~~~~q~----~e~vlrgmqe~gv~p~seT~adyvip~l~  283 (1088)
T KOG4318|consen  245 LLLG---INAAQV----FEFVLRGMQEKGVQPGSETQADYVIPQLS  283 (1088)
T ss_pred             hhhc---CccchH----HHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence            5554   333333    34888999999999999998654444444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.71  E-value=4.7e-09  Score=89.94  Aligned_cols=198  Identities=16%  Similarity=0.144  Sum_probs=85.8

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      ..++.++|++.++++.. .+-. +...|..++.. ...+++++|.+++.  ..-.++...+..++..|.+.|+++++.++
T Consensus        56 ~~~~~~~A~~ay~~l~~-~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  132 (280)
T PF13429_consen   56 SLGDYDEAIEAYEKLLA-SDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEEL  132 (280)
T ss_dssp             -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred             ccccccccccccccccc-cccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHH
Confidence            46778888888888876 4322 34456666665 67888888888887  22335666777888888888889888888


Q ss_pred             HHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee----ee
Q 043686           85 IQEYH----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI----EF  156 (282)
Q Consensus        85 ~~~m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~----~~  156 (282)
                      +++..    ..++...|..+...+.+.|+.++|.+.+++..+..|+++...+.++..+...|+.+++...+...    +.
T Consensus       133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~  212 (280)
T PF13429_consen  133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD  212 (280)
T ss_dssp             HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence            88743    34567788888888888899999999999888888888888888888888888888866633332    22


Q ss_pred             cCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh
Q 043686          157 RNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG  213 (282)
Q Consensus       157 ~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~  213 (282)
                      ...+ ..+-.++...|+.++|.    ..|++...  ..|+. .......+.....|...
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al----~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~  265 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEAL----EYLEKALK--LNPDDPLWLLAYADALEQAGRKD  265 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHH----HHHHHHHH--HSTT-HHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHhcccccccccc----cccccccc--ccccccccccccccccccccccc
Confidence            2222 34445566678888887    55555443  34543 33344444444444443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.65  E-value=1.9e-07  Score=94.72  Aligned_cols=244  Identities=10%  Similarity=0.026  Sum_probs=157.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh---HHH-----------
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT---HHA-----------   66 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~---~~~-----------   66 (282)
                      .+...|++++|+..|++..+   ..| |...+..+-.++.+.|+.++|...|+  ....|+..   .|.           
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            45678999999999999877   446 66788888889999999999999998  44445421   122           


Q ss_pred             -HHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           67 -LMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        67 -~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                       .+...+.+.|++++|.+.|++.. ..|+ ...+..|...|.+.|++++|.+.|++.....|++...+..|...|. .++
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~  433 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS  433 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence             22456778999999999999865 5564 7788889999999999999999999999999988888888888885 467


Q ss_pred             hhhhhcccceeeecCe--------------EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcc-cccchhhhh
Q 043686          144 WDVVNQAYSWIEFRNK--------------VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFS-LHYVDEERK  208 (282)
Q Consensus       144 ~~~A~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~-~~~~~~~~~  208 (282)
                      .++|...+...+....              .......+...|+.++|.    ..+++..+  ..|+.... ..+...+.+
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~----~~~~~Al~--~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA----ELQRQRLA--LDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH----HHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence            7888775544322110              000112234578888887    66665554  34664322 222333333


Q ss_pred             hhhhhhhHH-HHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhc
Q 043686          209 WTQIGHSEI-LALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVE  257 (282)
Q Consensus       209 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~  257 (282)
                      .+....+.. +.......+..+.......--+...|+.+.|...++++..
T Consensus       508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~  557 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPR  557 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence            333332211 1111222221111100001123356788888888887653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.57  E-value=2.9e-06  Score=68.52  Aligned_cols=141  Identities=12%  Similarity=0.042  Sum_probs=123.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      +|.+.|+...|..-+++-.+   ..|+.. ++.++-..|.+.|..+.|.+-|+  ..+.|+ ..+.|.....+|..|+++
T Consensus        44 ~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~  120 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE  120 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence            68899999999999999887   557654 88888889999999999999999  777784 778899999999999999


Q ss_pred             HHHHHHHhcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686           80 EARIFIQEYHMERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus        80 ~A~~l~~~m~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A  147 (282)
                      +|...|++..-.|+    ..||..+.-+-.+.|+.+.|.+.|++..+.+|+.+.+.-.+.+...+.|++-.|
T Consensus       121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            99999998532443    578999999999999999999999999999999888888998888888886666

>PRK12370 invasion protein regulator; Provisional

Probab=98.56  E-value=5.7e-07  Score=84.42  Aligned_cols=172  Identities=8%  Similarity=-0.047  Sum_probs=127.6

Q ss_pred             CChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHh---------cCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHcc
Q 043686            9 GQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACS---------TAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARA   75 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~---------~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~   75 (282)
                      +..++|+.+|++..+   ..|+.. .|..+-.++.         ..++.++|...++  ..+.|+ ...+..+-..+...
T Consensus       275 ~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            346789999999877   667654 3433333322         3355889999998  667774 77888888899999


Q ss_pred             CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           76 GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        76 g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      |++++|.+.|++.. ..|+ ...|..+...|...|++++|...+++..+++|.++..+..+...+...|++++|...+..
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999999999854 6776 778898999999999999999999999999998765655566667778999999886544


Q ss_pred             eeec---CeE---EEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686          154 IEFR---NKV---HVFGTGDVSCPRSEGIFWELQSLMKKM  187 (282)
Q Consensus       154 ~~~~---~~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M  187 (282)
                      ....   +..   ..+-..+...|+.++|.    ..+.++
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~----~~~~~~  467 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELAR----KLTKEI  467 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHH----HHHHHh
Confidence            3211   111   12233456789999998    555554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=1.4e-07  Score=86.06  Aligned_cols=196  Identities=12%  Similarity=0.056  Sum_probs=116.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCC-------------------------------C-CHHHHHHHHHHHhcCCCHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIE-------------------------------I-DPLTFAAVLHACSTAGMVEEG   50 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~-------------------------------p-~~~ty~~ll~a~~~~g~~~~a   50 (282)
                      .+|..-+++++|.++|+..++....+                               | .+.||.++-+.|+-.++.+.|
T Consensus       361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~A  440 (638)
T KOG1126|consen  361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTA  440 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHH
Confidence            36777888999999999987721111                               1 234556666666666666666


Q ss_pred             HHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           51 WLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        51 ~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      ...|+  .-+.| ...+|+-+..=+.....+|.|...|+... +.|+ -.+|..|...|.|.++++.|+-.|+++.+++|
T Consensus       441 ik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP  520 (638)
T KOG1126|consen  441 IKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP  520 (638)
T ss_pred             HHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc
Confidence            66666  34444 35555555555666666666666666643 3333 34566666667777777777777777777777


Q ss_pred             CChhHHHHHHHHHHHcCchhhhhccccee---eecCeE--EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCccc
Q 043686          126 LSAENYIMLSNWYAAEAKWDVVNQAYSWI---EFRNKV--HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSL  200 (282)
Q Consensus       126 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~~---~~~~~~--~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~  200 (282)
                      .+.+.-..+...|-+.|+.|+|...++.-   +..+..  ......+...++.++|+    ..+++++  -+.|+..+..
T Consensus       521 ~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal----~~LEeLk--~~vP~es~v~  594 (638)
T KOG1126|consen  521 SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL----QELEELK--ELVPQESSVF  594 (638)
T ss_pred             cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH----HHHHHHH--HhCcchHHHH
Confidence            77666667777777777777777744431   111111  01111123345566666    4455544  3567776665


Q ss_pred             ccch
Q 043686          201 HYVD  204 (282)
Q Consensus       201 ~~~~  204 (282)
                      +++.
T Consensus       595 ~llg  598 (638)
T KOG1126|consen  595 ALLG  598 (638)
T ss_pred             HHHH
Confidence            5544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.52  E-value=2.9e-06  Score=65.24  Aligned_cols=118  Identities=11%  Similarity=0.050  Sum_probs=97.7

Q ss_pred             HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-C
Q 043686           15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-M   90 (282)
Q Consensus        15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~   90 (282)
                      ..+|++-.+   +.|+.  +...-.++...|++++|...|+  ..+.| +...|..+..++.+.|++++|...|+... .
T Consensus        13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456666666   55664  5556677889999999999999  66777 57788999999999999999999999965 5


Q ss_pred             CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           91 ER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        91 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      .| +..+|..+..++.+.|+.++|...|+......|+++..|...-..
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            66 488999999999999999999999999999999887777655443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.47  E-value=5.5e-06  Score=80.78  Aligned_cols=181  Identities=8%  Similarity=-0.118  Sum_probs=131.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCC-CCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-----hhHHHHHHHHHHc
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSI-EIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-----VTHHALMVSVLAR   74 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~-~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-----~~~~~~li~~~~~   74 (282)
                      .++...|+.++|+..|+++.+ .+- .|+..-. .+..++...|++++|..+|+  ....|+     ...+..|..++..
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~  322 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKA-EGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE  322 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhc-cCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence            345677999999999999988 553 2443222 24668899999999999998  223332     2456677778899


Q ss_pred             cCChHHHHHHHHhcC-CCC-------------C---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           75 AGLFDEARIFIQEYH-MER-------------Y---PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        75 ~g~~~~A~~l~~~m~-~~p-------------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      .|++++|.++++.+. ..|             |   ...+..+...+...|+.++|.++++++....|+++..+..+...
T Consensus       323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l  402 (765)
T PRK10049        323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV  402 (765)
T ss_pred             cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999998875 333             2   23556677789999999999999999999999999999999999


Q ss_pred             HHHcCchhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 043686          138 YAAEAKWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKMEG  189 (282)
Q Consensus       138 y~~~g~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~  189 (282)
                      |...|+.++|+..++......--     ..........+++++|.    .+++++.+
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~----~~~~~ll~  455 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD----VLTDDVVA  455 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH----HHHHHHHH
Confidence            99999999999855543322111     12222345667788877    66666654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.44  E-value=6.3e-07  Score=81.79  Aligned_cols=150  Identities=14%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHh----CC-CCCCHHHH-HHHHHHHhcCCCHHHHHHHhh---------c-cCCCC-hhH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKK----SS-IEIDPLTF-AAVLHACSTAGMVEEGWLCFN---------R-IRSPK-VTH   64 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~----~g-~~p~~~ty-~~ll~a~~~~g~~~~a~~l~~---------~-g~~p~-~~~   64 (282)
                      -..|+..|+++.|+.+|++-.+.    .| -.|...+- +.+-..|...+++++|..+|+         . .-.|. ..+
T Consensus       206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~  285 (508)
T KOG1840|consen  206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT  285 (508)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            35789999999999999997651    13 13444333 335557888999999999998         2 23333 457


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhc-C--------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC--
Q 043686           65 HALMVSVLARAGLFDEARIFIQEY-H--------MERYPE-VLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS--  127 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m-~--------~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~--  127 (282)
                      ++.|-.+|++.|++++|...+++. .        ..|.+. .++.+...|+..+++++|..++....+     ..+++  
T Consensus       286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~  365 (508)
T KOG1840|consen  286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN  365 (508)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence            778888999999999999988773 2        234544 457777789999999999999998773     23333  


Q ss_pred             -hhHHHHHHHHHHHcCchhhhhccc
Q 043686          128 -AENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       128 -~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                       ..+++.|-..|-+.|++++|++.+
T Consensus       366 ~a~~~~nl~~l~~~~gk~~ea~~~~  390 (508)
T KOG1840|consen  366 LAKIYANLAELYLKMGKYKEAEELY  390 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHH
Confidence             578999999999999999887644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.38  E-value=1.4e-05  Score=78.02  Aligned_cols=148  Identities=14%  Similarity=0.020  Sum_probs=125.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      ......|+.++|+++|.+... .. ..+...+..+-.++.+.|++++|.++|+  ....|+ ...+..+...+...|+.+
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~-~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRV-HM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            455678999999999999875 22 2344468899999999999999999999  556664 666778999999999999


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +|...+++.. ..|+ .. |..+...+...|+.++|...++++.+..|+++..+..+...+.+.|..++|...++.
T Consensus       101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~  175 (765)
T PRK10049        101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD  175 (765)
T ss_pred             HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence            9999999964 4565 56 888999999999999999999999999999988888899999999999988875543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.35  E-value=2.1e-05  Score=67.94  Aligned_cols=143  Identities=9%  Similarity=-0.030  Sum_probs=98.8

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDP--LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~--~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~   82 (282)
                      .+..+.++.-+.++.......|+.  ..|..+-..+...|+.++|...|+  ..+.|+ ...|+.+...|...|++++|.
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            355567777777776412233332  346666667788888888888888  566664 678888888888889999998


Q ss_pred             HHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           83 IFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        83 ~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +.|++.. ..|+ ..+|..+...+...|++++|.+.|+...+..|+++ ........+...++.++|...+
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~-~~~~~~~l~~~~~~~~~A~~~l  188 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP-YRALWLYLAESKLDPKQAKENL  188 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHccCCHHHHHHHH
Confidence            8888854 6676 67888888888888899999988888888888764 2222222233344555554433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=5.2e-06  Score=76.06  Aligned_cols=115  Identities=13%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             HHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHH
Q 043686           40 ACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGK  114 (282)
Q Consensus        40 a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~  114 (282)
                      .|.+.++++.|.-.|+  ..+.| +.+....+...+-+.|+.|+|+++|++.- .+| |..+--.-+..+.-.++.++|+
T Consensus       498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence            3555555555555555  44555 34555555555566666666666666532 222 3333333444455556666666


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686          115 RVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       115 ~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      +.+++.+++.|++...|..|...|.+.|+.+.|..-|.|+
T Consensus       578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            6666666677766677777777777777777777766664

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.29  E-value=8.1e-07  Score=50.26  Aligned_cols=30  Identities=13%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH--hcCC
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLC--ELKP  125 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p  125 (282)
                      +||+||++|++.|++++|.++|++|.  ++.|
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p   33 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEP   33 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            68888888888888888888888887  4555

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.1e-06  Score=74.65  Aligned_cols=188  Identities=14%  Similarity=0.058  Sum_probs=132.5

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHH-------------------------------HhcCCCHHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHA-------------------------------CSTAGMVEEGWL   52 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a-------------------------------~~~~g~~~~a~~   52 (282)
                      .-...++++|+.+|+++.++...+. |..||+.++-.                               |+-.+..++|..
T Consensus       272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~  351 (559)
T KOG1155|consen  272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM  351 (559)
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence            3346789999999999988322332 44577665522                               223334666666


Q ss_pred             Hhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           53 CFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        53 l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      .|+  ..+.|. ...|+-|.+=|....+...|.+-++... + +.|-..|-.|-.+|.-.+...=|+-.|++...+.|+|
T Consensus       352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD  431 (559)
T KOG1155|consen  352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND  431 (559)
T ss_pred             HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence            676  666775 5678888888999999999999998854 4 4478899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCchhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHHhCCC
Q 043686          128 AENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSL  192 (282)
Q Consensus       128 ~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~  192 (282)
                      +..|.+|.+.|.+.+++++|++-+...-..+.+     ..+-..|.+.++.++|....++..+.+...|.
T Consensus       432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~  501 (559)
T KOG1155|consen  432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE  501 (559)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999955543322222     11122233344444554444444444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.24  E-value=6e-05  Score=65.13  Aligned_cols=176  Identities=13%  Similarity=-0.011  Sum_probs=116.9

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .|.+.|+.++|+..|.+..+   ..|+ ...|+.+-..+...|++++|.+.|+  ..+.|+ ...|..+...|...|+++
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  149 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALA---LRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYE  149 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            46778999999999999887   4564 5788888899999999999999999  667785 678888999999999999


Q ss_pred             HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHHHHHHcCchhhh--h----ccc
Q 043686           80 EARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSNWYAAEAKWDVV--N----QAY  151 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~~y~~~g~~~~A--~----~~~  151 (282)
                      +|.+.|+..- ..|+-.........+...++.++|.+.|.+.. ...|+. .. ..+..  ...|+++++  .    +.+
T Consensus       150 eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~-~~-~~~~~--~~lg~~~~~~~~~~~~~~~  225 (296)
T PRK11189        150 LAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ-WG-WNIVE--FYLGKISEETLMERLKAGA  225 (296)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc-cH-HHHHH--HHccCCCHHHHHHHHHhcC
Confidence            9999999843 56653222222222345678999999997755 344422 22 22322  234554433  1    111


Q ss_pred             ceeeecC-----eEEEEecCCCCCCChHHHHHHHHHHHHHHHhC
Q 043686          152 SWIEFRN-----KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGD  190 (282)
Q Consensus       152 ~~~~~~~-----~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~  190 (282)
                      +..+...     ....+-..+.+.|+.++|.    ..|++-.+.
T Consensus       226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~----~~~~~Al~~  265 (296)
T PRK11189        226 TDNTELAERLCETYFYLAKYYLSLGDLDEAA----ALFKLALAN  265 (296)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHh
Confidence            1111000     0011223456788889988    777766543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.24  E-value=1.1e-05  Score=62.02  Aligned_cols=96  Identities=10%  Similarity=-0.074  Sum_probs=82.9

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM  133 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~  133 (282)
                      ..+.|+.  +..+...+...|++++|.+.|+... ..| +...|..+...+.+.|++++|...|+....+.|+++.++..
T Consensus        20 l~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~   97 (144)
T PRK15359         20 LSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ   97 (144)
T ss_pred             HHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            3455653  5567888899999999999999865 566 48899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCchhhhhcccce
Q 043686          134 LSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +...|.+.|+.++|...+..
T Consensus        98 lg~~l~~~g~~~eAi~~~~~  117 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQT  117 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999775543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.23  E-value=1.2e-05  Score=72.50  Aligned_cols=240  Identities=8%  Similarity=-0.031  Sum_probs=134.9

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH--HHHHHHHccCChHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA--LMVSVLARAGLFDEAR   82 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~--~li~~~~~~g~~~~A~   82 (282)
                      .|++++|++.+..-.+ .  .+++.. |-....+..+.|+++.|.+.+.  ....|+...+-  .....+...|+.+.|.
T Consensus        97 eGd~~~A~k~l~~~~~-~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNAD-H--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHh-c--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            5999999988887655 3  223333 3333334467899999999998  66777765443  3467888899999999


Q ss_pred             HHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh--------HHHHHHHHHHHcCchhhhhcccc
Q 043686           83 IFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE--------NYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        83 ~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~--------~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +.+++.. ..|+ ......+...|.+.|++++|.+++..+.+..+.++.        +|..++.-.....+.+...+...
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999876 5665 778888999999999999999999999865443322        22233333223322233322222


Q ss_pred             eeee----cC-eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCC--cccccchhhhhhhhhhhhHHHHHHhhhc
Q 043686          153 WIEF----RN-KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPD--FSLHYVDEERKWTQIGHSEILALSFGLI  225 (282)
Q Consensus       153 ~~~~----~~-~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~--t~~~~~~~~~~~~~~~~~~~l~~~~~~~  225 (282)
                      ..+.    .. ..-.+...+...|+.++|.    .++++-.+.  .||..  .....+....-...+...+.+..   --
T Consensus       254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~----~~L~~~l~~--~~~~~l~~l~~~l~~~~~~~al~~~e~~lk---~~  324 (398)
T PRK10747        254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQ----QIILDGLKR--QYDERLVLLIPRLKTNNPEQLEKVLRQQIK---QH  324 (398)
T ss_pred             hCCHHHhCCHHHHHHHHHHHHHCCCHHHHH----HHHHHHHhc--CCCHHHHHHHhhccCCChHHHHHHHHHHHh---hC
Confidence            2221    11 1123445556677777776    444444442  33331  11111111000111112222111   11


Q ss_pred             cCCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686          226 STQVGATIHVTKNLRMRHICHDFAKAISKMVEGE  259 (282)
Q Consensus       226 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~  259 (282)
                      +..+...+.+-..+.+.+++..|.+.|++.....
T Consensus       325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~  358 (398)
T PRK10747        325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR  358 (398)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            1111111123444557788888888888776653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.21  E-value=6.5e-05  Score=60.95  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG-CRIHVQ--VKTGKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      ...|..|...|...|++++|...|++.. ..|+ ...|..+-.+ |.+.|+  .++|.+++++..+.+|+++.++..|..
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~  152 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS  152 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            4455555555555555555555555432 3332 4444444444 234444  255555555555555555555555555


Q ss_pred             HHHHcCchhhhhc
Q 043686          137 WYAAEAKWDVVNQ  149 (282)
Q Consensus       137 ~y~~~g~~~~A~~  149 (282)
                      .+.+.|++++|..
T Consensus       153 ~~~~~g~~~~Ai~  165 (198)
T PRK10370        153 DAFMQADYAQAIE  165 (198)
T ss_pred             HHHHcCCHHHHHH
Confidence            5555555555555

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.21  E-value=3.9e-05  Score=63.77  Aligned_cols=146  Identities=14%  Similarity=-0.079  Sum_probs=106.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCH----HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDP----LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVL   72 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~   72 (282)
                      ..|.+.|++++|...|++...   ..|+.    .++..+-.++-+.|++++|...++  ....|+..    .+..+..++
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~  117 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALES---RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN  117 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH---hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence            457788999999999999876   33542    356667778889999999999999  44555422    344455555


Q ss_pred             Hcc--------CChHHHHHHHHhcC-CCCC-HHHHH-----------------HHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           73 ARA--------GLFDEARIFIQEYH-MERY-PEVLR-----------------ALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        73 ~~~--------g~~~~A~~l~~~m~-~~p~-~~~~~-----------------~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      .+.        |+.++|.+.|++.. ..|+ ...+.                 .+...|.+.|++++|...+++.....|
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  197 (235)
T TIGR03302       118 YNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP  197 (235)
T ss_pred             HHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence            544        78899999998864 3454 22221                 344567888999999999999987655


Q ss_pred             C---ChhHHHHHHHHHHHcCchhhhhccc
Q 043686          126 L---SAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       126 ~---~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +   .+..+..+...|.+.|+.++|...+
T Consensus       198 ~~~~~~~a~~~l~~~~~~lg~~~~A~~~~  226 (235)
T TIGR03302       198 DTPATEEALARLVEAYLKLGLKDLAQDAA  226 (235)
T ss_pred             CCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4   3467889999999999988886643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.21  E-value=3.7e-05  Score=69.32  Aligned_cols=147  Identities=13%  Similarity=0.089  Sum_probs=105.3

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDP-------LTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSV   71 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-------~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~   71 (282)
                      ...|.+.|++++|.+++.++.+ .+..++.       .+|..++..-....+.+...++++   ...+.+.....++...
T Consensus       194 ~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~  272 (398)
T PRK10747        194 EQAYIRTGAWSSLLDILPSMAK-AHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH  272 (398)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence            4578889999999999999988 6654332       233444444444455566666666   3344467788888999


Q ss_pred             HHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           72 LARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +.+.|+.++|.+++++.. ..||..  -.++.+....++.+++.+..+...+..|+|+..+.++...+.+.+++++|.+.
T Consensus       273 l~~~g~~~~A~~~L~~~l~~~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~  350 (398)
T PRK10747        273 LIECDDHDTAQQIILDGLKRQYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA  350 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999988743 344431  12344455668889999999988888998888888899999998888888554


Q ss_pred             c
Q 043686          151 Y  151 (282)
Q Consensus       151 ~  151 (282)
                      |
T Consensus       351 l  351 (398)
T PRK10747        351 F  351 (398)
T ss_pred             H
Confidence            4

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.19  E-value=1e-05  Score=69.48  Aligned_cols=140  Identities=11%  Similarity=0.036  Sum_probs=94.3

Q ss_pred             ChHHHHHHHHHhHHhCCCCCCHHHHHHHH-HHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686           10 QRELGLSLFSELEKKSSIEIDPLTFAAVL-HACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEY   88 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll-~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m   88 (282)
                      +-+.++.-+++... ....++..++..+. ..+...|++++|.+++..+  .+.......|..|.+.+++|.|.+.++.|
T Consensus        81 ~~e~~l~~l~~~~~-~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   81 DKESALEELKELLA-DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             THHCHHHHHHHCCC-TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH-hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34555555555443 33332333333333 3577789999999998855  45677778899999999999999999999


Q ss_pred             C-CCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           89 H-MERYPEVL---RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        89 ~-~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      + +..|....   .+.+..+.-.+.+.+|..+|+++....|.++.+.|.+.-++...|++++|++...
T Consensus       158 ~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~  225 (290)
T PF04733_consen  158 QQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE  225 (290)
T ss_dssp             HCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            8 66664433   3333333334579999999999886655577888889999999999999998443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.19  E-value=1.7e-06  Score=48.89  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC---CCCC
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH---MERY   93 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~   93 (282)
                      ++||+||.+|++.|++++|.++|++|.   +.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            479999999999999999999999986   6676

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.18  E-value=7.4e-05  Score=72.78  Aligned_cols=150  Identities=14%  Similarity=0.071  Sum_probs=109.6

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHhh-----cc----CCCChhHHHHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIE-IDPLTFAAVLHACSTAGMVEEGWLCFN-----RI----RSPKVTHHALMVSV   71 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~-p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g----~~p~~~~~~~li~~   71 (282)
                      +-++.+.|+..++++.|+.|+. .|.. |+ .+--.+-++|...+.+++|..++.     .+    ..++......|.-+
T Consensus       299 l~aL~~r~r~~~vi~~y~~l~~-~~~~~P~-y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA  376 (822)
T PRK14574        299 LGALLVRHQTADLIKEYEAMEA-EGYKMPD-YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS  376 (822)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhh-cCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence            3467778888888888888887 7754 44 477788888888888888888888     11    12234445678888


Q ss_pred             HHccCChHHHHHHHHhcC----------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686           72 LARAGLFDEARIFIQEYH----------------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~----------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      |...+++++|..+++++.                ..|| ...+..++..+...|+..+|++.++++....|.|......+
T Consensus       377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~  456 (822)
T PRK14574        377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL  456 (822)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            888888888888887763                1123 34455566677888888888888888888888888888888


Q ss_pred             HHHHHHcCchhhhhcccce
Q 043686          135 SNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       135 i~~y~~~g~~~~A~~~~~~  153 (282)
                      .+.+...|...+|+..++.
T Consensus       457 A~v~~~Rg~p~~A~~~~k~  475 (822)
T PRK14574        457 ASIYLARDLPRKAEQELKA  475 (822)
T ss_pred             HHHHHhcCCHHHHHHHHHH
Confidence            8888888888888875433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.18  E-value=6.5e-05  Score=60.93  Aligned_cols=127  Identities=11%  Similarity=0.077  Sum_probs=97.9

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHH-HHccCC--hHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSV-LARAGL--FDEA   81 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~-~~~~g~--~~~A   81 (282)
                      .++.++++..+++..+ . -..|...|..+-..+...|++++|...|+  ..+.| +...+..+..+ |...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~-~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIR-A-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4556677777777555 2 23456677778788999999999999999  66677 47788888886 467777  5999


Q ss_pred             HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      .+++++.. ..|+ ..++..+-..+.+.|++++|...|+++....|++..- ..+|..
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r-~~~i~~  186 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR-TQLVES  186 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH-HHHHHH
Confidence            99999965 6674 8889999999999999999999999999888777433 344443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.15  E-value=2.9e-06  Score=47.79  Aligned_cols=27  Identities=19%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      .+||++|.+|++.|+++.|.++|++|+
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~   28 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMK   28 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            467777777777777777777777776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.14  E-value=0.00013  Score=60.12  Aligned_cols=151  Identities=13%  Similarity=-0.039  Sum_probs=97.0

Q ss_pred             CCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCC--CChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHH
Q 043686           27 IEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRS--PKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALL  101 (282)
Q Consensus        27 ~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li  101 (282)
                      ..|+...-..+-+++--.|+-+....+.. ..+.  .|...-+..+....+.|++..|...|.+..  -.||..+||-+-
T Consensus        62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             cCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            44544333444445666676666666665 2222  234455567777788888888888887754  244577888888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee----eecCeE-EEEecCCCCCCChHHH
Q 043686          102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI----EFRNKV-HVFGTGDVSCPRSEGI  176 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~----~~~~~~-~~~i~~~~~~~~~~~a  176 (282)
                      -+|.+.|++++|...|.+..++.|.++...|.|.-.|.-.|++++|...+..-    .....+ +.+.-.....|++++|
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            88888888888888888888887777777777777777788888887733321    112222 3333334566777666


Q ss_pred             H
Q 043686          177 F  177 (282)
Q Consensus       177 ~  177 (282)
                      .
T Consensus       222 ~  222 (257)
T COG5010         222 E  222 (257)
T ss_pred             H
Confidence            5

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.13  E-value=2.3e-06  Score=47.04  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      |||+||++|++.|++++|.++|++|.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHh
Confidence            56666666666666666666666665

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.13  E-value=0.00014  Score=70.89  Aligned_cols=150  Identities=11%  Similarity=0.028  Sum_probs=124.4

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCC----CCCCHHHHHHHHHHHhcCCCHHHHHHHhh--c---------------cCCC
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSS----IEIDPLTFAAVLHACSTAGMVEEGWLCFN--R---------------IRSP   60 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g----~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~---------------g~~p   60 (282)
                      -++|...+++++|+.+|++.....+    ..++......|.-++...+++++|..+++  .               ...|
T Consensus       334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~  413 (822)
T PRK14574        334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND  413 (822)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence            3678899999999999999865122    23344556889999999999999999999  1               1223


Q ss_pred             Ch-hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           61 KV-THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        61 ~~-~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      |- ..+..++..+...|+..+|++.++++. ..| |...+..+-+.+...|+..+|++.++....+.|++..+...+...
T Consensus       414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~  493 (822)
T PRK14574        414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET  493 (822)
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence            32 234567888999999999999999986 556 588999999999999999999999988889999998999999999


Q ss_pred             HHHcCchhhhhccc
Q 043686          138 YAAEAKWDVVNQAY  151 (282)
Q Consensus       138 y~~~g~~~~A~~~~  151 (282)
                      +-..|++.+|..+.
T Consensus       494 al~l~e~~~A~~~~  507 (822)
T PRK14574        494 AMALQEWHQMELLT  507 (822)
T ss_pred             HHhhhhHHHHHHHH
Confidence            99999999997754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.12  E-value=6.9e-05  Score=71.64  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG  103 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~  103 (282)
                      .++..+--|-.+..+.|+.++|..+++  ..+.|| ......+...+.+.+++++|...+++.- ..|+ ....+.+-.+
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            345555555556666666666666666  556665 3445566666666666666666666643 4555 4455555556


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          104 CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       104 ~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.+.|+.++|.++|++.....|++..++..+-..+-+.|+.++|..
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~  209 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD  209 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666666666656666666666666666666665

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.11  E-value=9.5e-07  Score=83.14  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC---------------------------CCCCHHHHHHHHHHHHhcC
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH---------------------------MERYPEVLRALLEGCRIHV  108 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---------------------------~~p~~~~~~~li~~~~~~g  108 (282)
                      .|+.||.+||..+|.-||..|+++.|- +|.-|+                           -.|...||+.|..+|.++|
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hG   97 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHG   97 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhcc
Confidence            799999999999999999999999998 776653                           1345678888888888888


Q ss_pred             ChhH
Q 043686          109 QVKT  112 (282)
Q Consensus       109 ~~~~  112 (282)
                      ++.-
T Consensus        98 Dli~  101 (1088)
T KOG4318|consen   98 DLIL  101 (1088)
T ss_pred             chHH
Confidence            7654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=9.9e-05  Score=65.39  Aligned_cols=145  Identities=13%  Similarity=0.099  Sum_probs=124.3

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~   80 (282)
                      |+-.++.++|+..|++-.+   +-|.... |+-+-.-|....+...|.+-++  ..+.| |-..|-.|..+|.-.+...-
T Consensus       340 YSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y  416 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY  416 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence            5667889999999999887   5576654 4445558999999999999999  56666 77899999999999999999


Q ss_pred             HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           81 ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        81 A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      |.-.|++.. +.|+ ...|.+|-.+|.+.++.++|.+.|+......-.+...+.-|.+.|-+-++..+|...+.
T Consensus       417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye  490 (559)
T KOG1155|consen  417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE  490 (559)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999976 7775 99999999999999999999999999986654455899999999999999999987443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.10  E-value=5.9e-05  Score=64.79  Aligned_cols=51  Identities=12%  Similarity=0.125  Sum_probs=24.2

Q ss_pred             HHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           72 LARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      |...|++++|.+++++-   .+.......+..|.+.+|++.|.+.++.|.+...
T Consensus       112 ~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e  162 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE  162 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred             HHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            44445555555554432   2333444445555555555555555555554444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.07  E-value=3.7e-06  Score=46.19  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH   89 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~   89 (282)
                      +|||+||++|++.|++++|.++|++|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHh
Confidence            589999999999999999999999997

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.06  E-value=3e-05  Score=65.72  Aligned_cols=117  Identities=18%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh-ccCCCCh------hHHHHHHHHHHccCC
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN-RIRSPKV------THHALMVSVLARAGL   77 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~------~~~~~li~~~~~~g~   77 (282)
                      --+.+.++|.++|-+|.+   ..|..+ +--+|-+-|-+.|.+|.|++++. .--+||.      ...--|-.-|-++|-
T Consensus        46 LLs~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             HhhcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence            346789999999999987   334333 33456667778899999999999 4455653      223345566889999


Q ss_pred             hHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           78 FDEARIFIQEYHMERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        78 ~~~A~~l~~~m~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      +|.|+++|....-.|.  ...--.|+.-|-+..+|++|.++-++...+.|
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~  172 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG  172 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence            9999999999762344  45667788889999999999988888876665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.04  E-value=0.00017  Score=54.30  Aligned_cols=109  Identities=11%  Similarity=0.027  Sum_probs=84.2

Q ss_pred             HHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686           17 LFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME   91 (282)
Q Consensus        17 lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~   91 (282)
                      +|++...   ..|+. .....+...+.+.|+.++|.+.|+  ....| +...+..+...|.+.|++++|...|+... ..
T Consensus         5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4555444   45544 345556667788899999999998  34445 57788889999999999999999998853 44


Q ss_pred             C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686           92 R-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA  128 (282)
Q Consensus        92 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~  128 (282)
                      | +..+|..+-..|...|++++|...|+...+..|++.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            5 477888888899999999999999999999988763

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=0.0001  Score=65.72  Aligned_cols=121  Identities=18%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCCh
Q 043686           35 AAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQV  110 (282)
Q Consensus        35 ~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~  110 (282)
                      .+|+..+...+++++|..+|+  ..-.|++  ...|...|-..++-.+|.+++++.- -.| |....+.....|.+.++.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            456677777899999999999  4445654  4457888888888899999998853 344 577777777889999999


Q ss_pred             hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec
Q 043686          111 KTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR  157 (282)
Q Consensus       111 ~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~  157 (282)
                      +.|+++.+++..+.|++..+|..|...|.+.|+++.|....+.+|..
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            99999999999999999899999999999999999999988777653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00540 hemY_coli hemY protein

Probab=98.00  E-value=3e-05  Score=70.10  Aligned_cols=200  Identities=6%  Similarity=-0.150  Sum_probs=108.1

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHH--------HHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHH--------ALMVSV   71 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~--------~~li~~   71 (282)
                      +.+.|+++.|...++++.+ .  .| +......+...+...|+.++|.+++.    .+.. +...+        ..+++.
T Consensus       163 ~l~~~~~~~Al~~l~~l~~-~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       163 LLAQNELHAARHGVDKLLE-M--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHCCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence            4567888888888888877 3  35 44466777778888888888888887    3222 22222        111211


Q ss_pred             HHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH--cCchhhh
Q 043686           72 LARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA--EAKWDVV  147 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~--~g~~~~A  147 (282)
                      -......+...+.++..+  .+.+...+..+...+...|+.++|.+++++..+..|++......++..+..  .++.+.+
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~  318 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL  318 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence            112222333344444443  123667777777777777888888877777777777553211113333332  3444444


Q ss_pred             hcccce----eeecC--eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhh
Q 043686          148 NQAYSW----IEFRN--KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQI  212 (282)
Q Consensus       148 ~~~~~~----~~~~~--~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~  212 (282)
                      .+.++.    -|...  .+ .++-.-+.+.|++++|.    +.|+.-......||...+.++..-+.+.+.-
T Consensus       319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~----~~le~a~a~~~~p~~~~~~~La~ll~~~g~~  386 (409)
T TIGR00540       319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAA----DAFKNVAACKEQLDANDLAMAADAFDQAGDK  386 (409)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHH----HHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH
Confidence            442221    11111  11 12222345667777776    6666434444567776665555544444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.00  E-value=7.3e-05  Score=57.49  Aligned_cols=123  Identities=9%  Similarity=-0.007  Sum_probs=94.2

Q ss_pred             cCC-CC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           57 IRS-PK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        57 g~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      ++. ++ ....-++-.-+...|++++|+++|+-.- +.|. ..-|-.|-.+|-..|++++|...|.....+.|+++.++-
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            444 43 4455566777788999999999999865 6776 667888999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          133 MLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       133 ~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      .+-..|.+.|+.+.|.+.|...         |.-+..+++..+..+.++..++.+.
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~~A---------i~~~~~~~~~~~l~~~A~~~L~~l~  154 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALKAV---------VRICGEVSEHQILRQRAEKMLQQLS  154 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH---------HHHhccChhHHHHHHHHHHHHHHhh
Confidence            9999999999999999977653         1112233444454555556665554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.97  E-value=8.4e-06  Score=45.82  Aligned_cols=28  Identities=25%  Similarity=0.231  Sum_probs=24.0

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH   89 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~   89 (282)
                      +.+|+++|++|++.|+++.|.++|++|.
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~   28 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMK   28 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3688889999999999999999998886

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.93  E-value=0.0004  Score=61.32  Aligned_cols=146  Identities=14%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHH---HHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDP-LTFAA---VLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGL   77 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~---ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~   77 (282)
                      +...|++++|.+++++..+ .  .|+. ..+..   ........|..+.+.+.+.  ....|+ ......+...+...|+
T Consensus        53 ~~~~g~~~~A~~~~~~~l~-~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          53 AWIAGDLPKALALLEQLLD-D--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHH-H--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence            3455666666666666554 2  2332 22221   1111112344444444444  223333 2233344455666666


Q ss_pred             hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCchhhhhccc
Q 043686           78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA----ENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~----~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +++|.+.+++.- ..|+ ...+..+-..|...|++++|...+++.....|.++    ..|..+...|...|+.++|...+
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            666666666643 3343 45556666666666666666666666665443211    12335566666666666666644


Q ss_pred             ce
Q 043686          152 SW  153 (282)
Q Consensus       152 ~~  153 (282)
                      +.
T Consensus       210 ~~  211 (355)
T cd05804         210 DT  211 (355)
T ss_pred             HH
Confidence            44

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.92  E-value=0.00019  Score=65.88  Aligned_cols=147  Identities=11%  Similarity=0.099  Sum_probs=111.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHH----hCC-CCCCHH-HHHHHHHHHhcCCCHHHHHHHhh-------ccCCC---C-hhHH
Q 043686            3 LGYSLHGQRELGLSLFSELEK----KSS-IEIDPL-TFAAVLHACSTAGMVEEGWLCFN-------RIRSP---K-VTHH   65 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~----~~g-~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p---~-~~~~   65 (282)
                      ..|.+.|++++|...+++..+    ..| ..|.+. -++.+...|+..+.+++|..++.       .-+.+   + ..+|
T Consensus       291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~  370 (508)
T KOG1840|consen  291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY  370 (508)
T ss_pred             HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            368899999998888877432    022 234444 35556667888999999999998       11222   2 4589


Q ss_pred             HHHHHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC---CCh
Q 043686           66 ALMVSVLARAGLFDEARIFIQEYH---------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC----ELKP---LSA  128 (282)
Q Consensus        66 ~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~p---~~~  128 (282)
                      +.|-..|-+.|++++|+++|++..         ..+. -...|.|-..|.+.++.++|.++|.+..    .+.|   +..
T Consensus       371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~  450 (508)
T KOG1840|consen  371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT  450 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence            999999999999999999998842         2333 4567889999999999999999999876    3444   445


Q ss_pred             hHHHHHHHHHHHcCchhhhhc
Q 043686          129 ENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       129 ~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .+|..|...|-..|++++|..
T Consensus       451 ~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  451 YTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             HHHHHHHHHHHHcccHHHHHH
Confidence            778899999999999999865

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=0.00043  Score=61.39  Aligned_cols=135  Identities=9%  Similarity=0.111  Sum_probs=102.1

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      .-.+...|++++.+...  -++.|+...+-|-..|-+.|+-.+|.+.+-   +-++.|..|...|-.-|....-+++|..
T Consensus       570 ~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~  647 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN  647 (840)
T ss_pred             HhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence            33455566666655432  233355677777788888888888888776   4444577888888888888888889999


Q ss_pred             HHHhcC-CCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           84 FIQEYH-MERYPEVLRALLEG-CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        84 l~~~m~-~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      .|++.. ++|++.-|-.||.. +-+.|++.+|.++|+..-.--|.+....-.|++..+..|.
T Consensus       648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            998865 78999999888875 4566999999999999888888888888888888777664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=8.4e-05  Score=66.25  Aligned_cols=144  Identities=13%  Similarity=0.076  Sum_probs=120.6

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A   81 (282)
                      .-.|+..+|...|+.... .  .|.... |--+-.+|....+.++.+..|.  ..+.| |..+|-.-...+.-.+++++|
T Consensus       337 fL~g~~~~a~~d~~~~I~-l--~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIK-L--DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhcCCchhhhhhHHHHHh-c--CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence            346888999999999887 3  343333 7777778999999999999999  77777 577888888888888899999


Q ss_pred             HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      ..=|++.. +.|. +..|--+--+..|.+++++++..|++.++--|.-+..|+.....+...+++++|.+.++
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            99999866 6775 77777777778888999999999999998888888999999999999999999988544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.88  E-value=0.00013  Score=49.98  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      +..+...+.+.|++++|.+.|++.. ..|+ ..++..+...+...|++++|.+.|+......|.+..++..+...|...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            4455666667777777777777643 3343 4566667777777777777777777777666666556667777777777


Q ss_pred             chhhhhcc
Q 043686          143 KWDVVNQA  150 (282)
Q Consensus       143 ~~~~A~~~  150 (282)
                      +.++|...
T Consensus        83 ~~~~a~~~   90 (100)
T cd00189          83 KYEEALEA   90 (100)
T ss_pred             hHHHHHHH
Confidence            76666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.88  E-value=0.00075  Score=58.79  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=114.6

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDP-------LTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSV   71 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-------~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~   71 (282)
                      ..+|.+.|++.....+...|.+ .|+--|+       .+|..+++=....+..+.-...|+   ...+-+...-.+++.-
T Consensus       194 ~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~  272 (400)
T COG3071         194 LRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAER  272 (400)
T ss_pred             HHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHH
Confidence            4679999999999999999999 8876665       478899998888888888777887   5566667777888999


Q ss_pred             HHccCChHHHHHHHHhc-C--CC-----------------------------C-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686           72 LARAGLFDEARIFIQEY-H--ME-----------------------------R-YPEVLRALLEGCRIHVQVKTGKRVID  118 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m-~--~~-----------------------------p-~~~~~~~li~~~~~~g~~~~A~~~~~  118 (282)
                      +.++|+.++|.++..+- +  ..                             | +...+.+|-.-|.+++.|.+|...|+
T Consensus       273 li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~le  352 (400)
T COG3071         273 LIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALE  352 (400)
T ss_pred             HHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999987652 1  11                             2 23457777777888888888888888


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          119 QLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       119 ~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ......| +..+|+-+.+.|.+.|+..+|..
T Consensus       353 aAl~~~~-s~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         353 AALKLRP-SASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             HHHhcCC-ChhhHHHHHHHHHHcCChHHHHH
Confidence            7777777 44788888888888888777754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.87  E-value=0.00041  Score=57.24  Aligned_cols=145  Identities=14%  Similarity=0.107  Sum_probs=100.0

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      +-..|+-+.+..+......  .-.-|....+...+...+.|++.+|...|.   ..-+||...|+.+--+|-+.|++++|
T Consensus        76 ~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~A  153 (257)
T COG5010          76 LYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEA  153 (257)
T ss_pred             HHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHH
Confidence            3344555555555555332  122233344557777778888888888887   44445678888888888888888888


Q ss_pred             HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ..-|.+.. +.|+ ....|.|.-.|.-.|+.+.|..++.......|.+...-..|.-..+..|++++|+.+-
T Consensus       154 r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         154 RRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             HHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            88887743 4454 6677777777888888888888888877666656567777777888888888887644

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.87  E-value=8.6e-05  Score=69.04  Aligned_cols=185  Identities=15%  Similarity=0.099  Sum_probs=131.4

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      |-+|+..|+..+|..+..+-.+   =.||+.-|..+.+..-+..-+++|.++++ ....    .--.+-....+.+++++
T Consensus       431 i~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~  503 (777)
T KOG1128|consen  431 ILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSE  503 (777)
T ss_pred             HHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHH
Confidence            5678888888888887777554   45788888888888888888888888887 1111    11111112233688999


Q ss_pred             HHHHHHh-cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC
Q 043686           81 ARIFIQE-YHMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN  158 (282)
Q Consensus        81 A~~l~~~-m~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~  158 (282)
                      +.+.|+. +.+.|- ..+|-.+-.+.-+.++++.|.+.|..-..++|++..+||.|-.+|.+.|+-.+|...+..--..+
T Consensus       504 ~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  504 ADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999987 445554 67999999999999999999999999999999999999999999999999999988433322111


Q ss_pred             ----eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCcc
Q 043686          159 ----KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRP  194 (282)
Q Consensus       159 ----~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~p  194 (282)
                          .+ -.++.-..+.|.+++|+....++. .|++.+-.|
T Consensus       584 ~~~w~iWENymlvsvdvge~eda~~A~~rll-~~~~~~~d~  623 (777)
T KOG1128|consen  584 YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL-DLRKKYKDD  623 (777)
T ss_pred             CCCCeeeechhhhhhhcccHHHHHHHHHHHH-Hhhhhcccc
Confidence                11 223333467888999985554443 344444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.87  E-value=0.00015  Score=54.65  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=82.2

Q ss_pred             cCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686           57 IRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM  133 (282)
Q Consensus        57 g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~  133 (282)
                      ...|+ ......+...+.+.|+.++|.+.|+... ..| +...|..+...|.+.|++++|...++...+..|+++.++..
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            45564 4556778888999999999999999864 455 57889999999999999999999999999999988899999


Q ss_pred             HHHHHHHcCchhhhhcccce
Q 043686          134 LSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +...|...|+.++|...+..
T Consensus        91 la~~~~~~g~~~~A~~~~~~  110 (135)
T TIGR02552        91 AAECLLALGEPESALKALDL  110 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            99999999999988765543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.85  E-value=0.00046  Score=50.37  Aligned_cols=101  Identities=15%  Similarity=0.099  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHH
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALL  101 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li  101 (282)
                      ++-.+...+.+.|+.++|.+.|.  ....|+    ...+..+...|.+.|+++.|.+.|+... ..|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            45556666777888888888887  222333    2456668888999999999999998864 3344    45678888


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686          102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIM  133 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~  133 (282)
                      ..+.+.|+.++|.+.++++....|++..+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            88999999999999999999888877555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.85  E-value=0.00049  Score=65.95  Aligned_cols=126  Identities=10%  Similarity=0.044  Sum_probs=106.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      ...+.|++++|+.+++...+   +.||.. ....+..++.+.+++++|....+  ....|+ ....+.+-.++.+.|+.+
T Consensus        95 i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~  171 (694)
T PRK15179         95 ALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSE  171 (694)
T ss_pred             HHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchH
Confidence            45678999999999999988   889887 45567778999999999999999  667775 667788999999999999


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      +|.++|++.- ..|| ..+|.++-..+.+.|+.++|...|+.......+.+..|+
T Consensus       172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence            9999999965 4666 789999999999999999999999999854433445554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.85  E-value=0.00022  Score=63.63  Aligned_cols=115  Identities=10%  Similarity=0.001  Sum_probs=93.9

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCCh
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLF   78 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~   78 (282)
                      +..+...++++.|+.+|+++.+ ..  |+.  ...+...+...++-.+|.++..   ...+-|......-.+.+.+.++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~-~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRE-RD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHh-cC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            4556778899999999999988 43  664  4457777777888899999998   33333566666677788999999


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      +.|.++.+++. ..|+ ..+|..|..+|.+.|++++|+..+..+.
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999976 7887 6699999999999999999999988765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.84  E-value=0.00022  Score=63.62  Aligned_cols=126  Identities=17%  Similarity=0.089  Sum_probs=104.0

Q ss_pred             cCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 043686           43 TAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVI  117 (282)
Q Consensus        43 ~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~  117 (282)
                      ..|..++|...+.  ..-.|| ..-.....+.+.+.++..+|.+.++++. ..|+ ...+-++-.+|.+.|+..+|.+++
T Consensus       318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L  397 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRIL  397 (484)
T ss_pred             HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence            4566777777777  666676 4455688899999999999999999976 6788 667777889999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHH
Q 043686          118 DQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWEL  180 (282)
Q Consensus       118 ~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~  180 (282)
                      +.-..-.|+++..|..|..+|...|+..+|......            ++...|.++.|+..+
T Consensus       398 ~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------~~~~~G~~~~A~~~l  448 (484)
T COG4783         398 NRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE------------GYALAGRLEQAIIFL  448 (484)
T ss_pred             HHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------HHHhCCCHHHHHHHH
Confidence            999999999999999999999999999998765433            256678888887333

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00033  Score=47.82  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=67.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcC
Q 043686           34 FAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHV  108 (282)
Q Consensus        34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g  108 (282)
                      +..+...+...|++++|...++  ....|+ ...+..+...|...|++++|.+.|+... ..| +..+|..+...+...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            3445555666777888887777  333443 4667778888888888999999888743 334 4567888888888999


Q ss_pred             ChhHHHHHHHHHHhcCC
Q 043686          109 QVKTGKRVIDQLCELKP  125 (282)
Q Consensus       109 ~~~~A~~~~~~m~~~~p  125 (282)
                      +.++|...+.+.....|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            99999998888876666

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.69  E-value=0.00051  Score=68.16  Aligned_cols=191  Identities=10%  Similarity=-0.004  Sum_probs=144.6

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCH---HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccC
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDP---LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~---~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g   76 (282)
                      |+-..+.++.++|++++++...+-+++-..   -.|.++++.-..-|.-+...++|+  .-..--..+|..|...|.+.+
T Consensus      1465 Maf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1465 MAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSE 1544 (1710)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhh
Confidence            344567788999999999976522222221   357777777777778888999999  222223568899999999999


Q ss_pred             ChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           77 LFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        77 ~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      ++++|-++|+.|-  +.-...+|...+..+.+..+-+.|.+++.++.++-|.  ++..-.-.+.+-.+.|+-+++..+|+
T Consensus      1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFE 1624 (1710)
T ss_pred             cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHH
Confidence            9999999999996  6655789999999999999999999999999988885  44444556666678899888776554


Q ss_pred             e----eeecC-eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686          153 W----IEFRN-KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP  196 (282)
Q Consensus       153 ~----~~~~~-~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~  196 (282)
                      .    .|.+. ..+.++..-.+++..+.+.    .||++....++.|-.
T Consensus      1625 gll~ayPKRtDlW~VYid~eik~~~~~~vR----~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1625 GLLSAYPKRTDLWSVYIDMEIKHGDIKYVR----DLFERVIELKLSIKK 1669 (1710)
T ss_pred             HHHhhCccchhHHHHHHHHHHccCCHHHHH----HHHHHHHhcCCChhH
Confidence            4    33333 3377888778888887776    999999999987765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.68  E-value=0.001  Score=54.05  Aligned_cols=90  Identities=7%  Similarity=-0.018  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      +..-|--+|-..|+...|.+-+++.. +.|+ ..+|..+-..|-+.|..+.|.+.|++...+.|++-...|..--.+|..
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence            45567778889999999999988854 7777 668888888899999999999999999899998878888888888888


Q ss_pred             Cchhhhhcccce
Q 043686          142 AKWDVVNQAYSW  153 (282)
Q Consensus       142 g~~~~A~~~~~~  153 (282)
                      |++++|..-|+.
T Consensus       117 g~~~eA~q~F~~  128 (250)
T COG3063         117 GRPEEAMQQFER  128 (250)
T ss_pred             CChHHHHHHHHH
Confidence            887777664443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00047  Score=58.82  Aligned_cols=142  Identities=11%  Similarity=0.007  Sum_probs=111.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH-HHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA-LMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~~~g~~~   79 (282)
                      .+|.+-|.+.+|.+.|+.-..   -.|-+.||--|-++|.+...++.|..++.  ....|-.+||- -+-..+-..++.+
T Consensus       231 kCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  231 KCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence            478888999999999988665   35777789889999999999999999998  44556555553 5666777788999


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A  147 (282)
                      +|.++++..- ..| |+.+...+-.+|.-.++.|-|++.|+.+.++...++..|+.+--.|.-++.+|-+
T Consensus       308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence            9999998853 344 5777888888898999999999999999877665668888777666666666655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.64  E-value=0.00027  Score=46.07  Aligned_cols=60  Identities=18%  Similarity=0.134  Sum_probs=50.7

Q ss_pred             HHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           68 MVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        68 li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      +...+.+.|++++|.+.|++.. ..|+ ...|..+-..+.+.|++++|...|+++.+..|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            4567888999999999999965 5675 7889999999999999999999999999999976

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.62  E-value=0.001  Score=61.64  Aligned_cols=172  Identities=12%  Similarity=0.013  Sum_probs=116.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHh-cC-----CCHHHHHHHhh---------------------
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACS-TA-----GMVEEGWLCFN---------------------   55 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~-~~-----g~~~~a~~l~~---------------------   55 (282)
                      ..|.+.|+.++|..+|..+.+ .+  |+...|-..+..+. -.     ...+.-.++++                     
T Consensus        46 ~ll~kLg~~~eA~~~y~~Li~-rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~  122 (517)
T PF12569_consen   46 ELLLKLGRKEEAEKIYRELID-RN--PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE  122 (517)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-HC--CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC
Confidence            357788999999999999987 43  66665555444433 21     24555555555                     


Q ss_pred             -----------------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--------C---------CCCHHHH--HH
Q 043686           56 -----------------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--------M---------ERYPEVL--RA   99 (282)
Q Consensus        56 -----------------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~---------~p~~~~~--~~   99 (282)
                                       .|++   .+|+.|-..|....+.+-..+++.+..        +         .|....|  .-
T Consensus       123 g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~  199 (517)
T PF12569_consen  123 GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYF  199 (517)
T ss_pred             HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHH
Confidence                             3332   256666666666666666666666531        1         2444344  55


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE----E-EEecCCCCCCChH
Q 043686          100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV----H-VFGTGDVSCPRSE  174 (282)
Q Consensus       100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~----~-~~i~~~~~~~~~~  174 (282)
                      |-..|...|+.++|++.+++..+..|..+..|..-.+.|-..|++.+|.+..+.-..-+..    | -...-+-++|+.+
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e  279 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE  279 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence            5667899999999999999999999988999999999999999999998855443322222    1 1222235688899


Q ss_pred             HHHHHH
Q 043686          175 GIFWEL  180 (282)
Q Consensus       175 ~a~~~~  180 (282)
                      +|...+
T Consensus       280 ~A~~~~  285 (517)
T PF12569_consen  280 EAEKTA  285 (517)
T ss_pred             HHHHHH
Confidence            987433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.60  E-value=0.0019  Score=51.07  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG  103 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~  103 (282)
                      ..|..+-..+...|++++|...|+  ....|+    ...+..+...|.+.|++++|.+.+++.. ..|+ ...+..+...
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            356666777888999999999998  333343    3578889999999999999999998854 5564 6677777778


Q ss_pred             HHhcCC--------------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686          104 CRIHVQ--------------VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus       104 ~~~~g~--------------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      |...|+              +++|.+++++..+..|++   |..++..+...|+
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            888776              466777777777788844   7777777777765

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.60  E-value=0.001  Score=59.01  Aligned_cols=96  Identities=11%  Similarity=0.022  Sum_probs=62.7

Q ss_pred             HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686           41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      +...|++++|.+.|+  ....| +...|..+..+|.+.|++++|...+++.. +.|+ ...|..+..+|.+.|++++|..
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            444566666666666  33444 34566666677777777777777777654 4554 6667777777777777777777


Q ss_pred             HHHHHHhcCCCChhHHHHHHH
Q 043686          116 VIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      .|++..++.|++......+-.
T Consensus        92 ~~~~al~l~P~~~~~~~~l~~  112 (356)
T PLN03088         92 ALEKGASLAPGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHH
Confidence            777777777766554444433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.00012  Score=62.35  Aligned_cols=216  Identities=12%  Similarity=-0.009  Sum_probs=118.2

Q ss_pred             HHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhH
Q 043686           37 VLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKT  112 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~  112 (282)
                      +-+.|.+.|.+.+|...|+  ..-.|-+.||--|-..|.+..+.+.|..+|.+-. .-|- +.....+...+-..++.++
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~  308 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED  308 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence            5556777777777777777  4455666677777777777777777777777633 3443 3333555556667777777


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686          113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKM  187 (282)
Q Consensus       113 A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M  187 (282)
                      |.++|+...+.+|.++.+-.++...|.-.++.+-|.+-..++-.-+..     +.+-.++...++++-++.-+++-+.-|
T Consensus       309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta  388 (478)
T KOG1129|consen  309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA  388 (478)
T ss_pred             HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence            777777777777777666666666666777777776644333322222     122222334455555553333444444


Q ss_pred             HhCCCccCCC-cccccchhhhhhhhhhhhHHHHHHhhhccCCCCCeEEEeeccc----cccchHHHHHHHHHhhcc
Q 043686          188 EGDSLRPKPD-FSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLR----MRHICHDFAKAISKMVEG  258 (282)
Q Consensus       188 ~~~g~~pd~~-t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~a~~~~~~m~~~  258 (282)
                      .+.|...|.= -+.+..-..+.......+.+++    +..++.+..  -.+++.    +.|+++.|..+++...+.
T Consensus       389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla----L~~d~~h~e--alnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA----LTSDAQHGE--ALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             cCcchhhhhhhccceeEEeccchHHHHHHHHHH----hccCcchHH--HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            4444444330 0000000000110111222222    222222221  123333    789999999999987664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0012  Score=59.90  Aligned_cols=120  Identities=13%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh------ccCC----CChhHHHHHHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN------RIRS----PKVTHHALMVSVLA   73 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~------~g~~----p~~~~~~~li~~~~   73 (282)
                      |.+.++.+.|.++|.+-..   +-| |+...+-+--..-..+.+.+|..+|.      ..+.    --..+++.|..+|.
T Consensus       390 y~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R  466 (611)
T KOG1173|consen  390 YMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR  466 (611)
T ss_pred             HHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence            3444555556666555432   333 23333333322333455555555555      0011    12234555666666


Q ss_pred             ccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           74 RAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        74 ~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      |.++.++|...|++.-  .+.|+.+|+++--.|...|+++.|.+.|.+...+.|++
T Consensus       467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            6666666666665522  23455566666666666666666666666666666655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.58  E-value=0.00036  Score=62.69  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=95.0

Q ss_pred             HHHHhHHh--CCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-c-----cCCCChhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686           17 LFSELEKK--SSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-R-----IRSPKVTHHALMVSVLARAGLFDEARIFIQEY   88 (282)
Q Consensus        17 lf~~m~~~--~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~-----g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m   88 (282)
                      ++..|.+.  .+..-+.++...+++.+....+++++..++- .     ...--..|..++|..|-+.|..+++.++++.=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            66666542  3456678899999999999999999888876 1     11111234569999999999999999999873


Q ss_pred             C---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCChhHHHHHHHHHHHc
Q 043686           89 H---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        89 ~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~~~~~~~~Li~~y~~~  141 (282)
                      .   +=||..|+|.||+.+.+.|++..|.++..+|. +-..+++.|+..-+.++.+.
T Consensus       130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            3   77999999999999999999999999999987 32334557777666655555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.00052  Score=57.78  Aligned_cols=96  Identities=9%  Similarity=-0.025  Sum_probs=80.8

Q ss_pred             HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686           41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      ..+.+++.+|...|.  .-+.| |.+-|+.--.+|++.|.++.|.+=-+.-. +.|. ..+|..|-.+|...|++++|.+
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~  170 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE  170 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence            566788999999998  77888 57777888999999999999998777644 7887 7899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHH
Q 043686          116 VIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      .|++...++|++.+..+.|=-
T Consensus       171 aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  171 AYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HHHhhhccCCCcHHHHHHHHH
Confidence            999999999998544444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.55  E-value=0.002  Score=50.67  Aligned_cols=131  Identities=13%  Similarity=0.126  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHH
Q 043686           11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      +..+...+..+.+..+-.-....|..+...+...|++++|...|+  ..+.|+    ..+|..+-..|.+.|+.++|.+.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            444555555553202222234456666667778899999999998  333343    34788899999999999999999


Q ss_pred             HHhcC-CCCC-HHHHHHHHHHHH-------hcCChhHH-------HHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686           85 IQEYH-MERY-PEVLRALLEGCR-------IHVQVKTG-------KRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus        85 ~~~m~-~~p~-~~~~~~li~~~~-------~~g~~~~A-------~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      +++.. ..|+ ..+++.+...|.       +.|++++|       ..+|++..+..|++   +......+...|++
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~  167 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF  167 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence            98854 4554 566777777777       77787744       44444555677743   34444444444443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.55  E-value=0.00076  Score=48.66  Aligned_cols=71  Identities=11%  Similarity=0.109  Sum_probs=45.4

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCC-CCCHHHHHHHHHHHhcCCCH--------HHHHHHhh----ccCCCChhHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSI-EIDPLTFAAVLHACSTAGMV--------EEGWLCFN----RIRSPKVTHHALM   68 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~-~p~~~ty~~ll~a~~~~g~~--------~~a~~l~~----~g~~p~~~~~~~l   68 (282)
                      |.-+...+++.....+|+.+++ .|+ .|+..+|+.++.+.++...-        -+...+++    .+++|+..||+.+
T Consensus        32 I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            4455666888888888888888 888 88888888888877764321        11122222    5555555555555


Q ss_pred             HHHHH
Q 043686           69 VSVLA   73 (282)
Q Consensus        69 i~~~~   73 (282)
                      |..+.
T Consensus       111 l~~Ll  115 (120)
T PF08579_consen  111 LGSLL  115 (120)
T ss_pred             HHHHH
Confidence            55543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.00063  Score=60.84  Aligned_cols=142  Identities=17%  Similarity=0.177  Sum_probs=88.3

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      .+++++|..=|++-.+   +.|+. ..|--+--+.-+.+.++++...|+   ..++-.+.+||-.-..+.-.+++++|.+
T Consensus       407 L~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  407 LQQYEEAIADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             HHHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence            3456667777766655   44543 244444444456677777777777   5554456677777777777777777777


Q ss_pred             HHHhcC-CCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           84 FIQEYH-MERY---------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        84 l~~~m~-~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      .|+... ..|+         ..+--+++-.- -.+++.+|.+++++..+++|.....|.+|...-.+.|++++|+..|+.
T Consensus       484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK  562 (606)
T ss_pred             HHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            777632 3333         11222222221 236777777777777777776667777777777777777777665543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.54  E-value=0.0016  Score=62.10  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=94.7

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A   81 (282)
                      |++ |+.++|.+++.+..+ . -..+...|-+|-..|-+.|+.+++...+-  .-+.| |..-|..+-+...+.|+++.|
T Consensus       150 far-g~~eeA~~i~~EvIk-q-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA  226 (895)
T KOG2076|consen  150 FAR-GDLEEAEEILMEVIK-Q-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA  226 (895)
T ss_pred             HHh-CCHHHHHHHHHHHHH-h-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence            455 999999999999886 3 23466789999999999999999998887  55556 578899999999999999999


Q ss_pred             HHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           82 RIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        82 ~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      .-.|.+.. ..| |...+--=.+-|-+.|+...|.+-|.++....|
T Consensus       227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99998843 444 433333346678889999999999999988777

>TIGR00540 hemY_coli hemY protein

Probab=97.49  E-value=0.0028  Score=57.33  Aligned_cols=186  Identities=9%  Similarity=-0.031  Sum_probs=119.3

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCC-CCCCHH------HHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSS-IEIDPL------TFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSV   71 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~~------ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~   71 (282)
                      ...|.+.|++++|.+++....+ .+ ..|...      .+..++..-......+.....+.   ...+.+...+.++...
T Consensus       194 ~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~  272 (409)
T TIGR00540       194 EEAYIRSGAWQALDDIIDNMAK-AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEH  272 (409)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHH
Confidence            3568889999999999999987 64 445543      23333332222223344444444   2222377888888899


Q ss_pred             HHccCChHHHHHHHHhcC-CCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCchh
Q 043686           72 LARAGLFDEARIFIQEYH-MERYPEV---LRALLEGCRIHVQVKTGKRVIDQLCELKPLSA--ENYIMLSNWYAAEAKWD  145 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~-~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~--~~~~~Li~~y~~~g~~~  145 (282)
                      +.+.|+.++|.+++++.. ..||...   +..........++.+++.+.++...+..|+++  ....+|...|.+.|+++
T Consensus       273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~  352 (409)
T TIGR00540       273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI  352 (409)
T ss_pred             HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence            999999999999998854 4565332   12222233445778888888888888889887  66778888899999999


Q ss_pred             hhhcccce--e-ee---cCeEEEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          146 VVNQAYSW--I-EF---RNKVHVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       146 ~A~~~~~~--~-~~---~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      +|.+.|+.  . ..   ......+-..+.+.|+.++|.+...+-+..|.
T Consensus       353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            99987772  2 11   11113334445677888888744433333333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.47  E-value=7.5e-05  Score=51.58  Aligned_cols=75  Identities=12%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             cCChHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           75 AGLFDEARIFIQEYH-MER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        75 ~g~~~~A~~l~~~m~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      .|+++.|..+|+++. ..|   +...|-.+..+|.+.|++++|..+++. .+..|.+......+..+|.+.|++++|.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            356666666666653 223   333444466666666666666666666 444443434444456666666666666543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0031  Score=52.38  Aligned_cols=134  Identities=9%  Similarity=0.005  Sum_probs=77.0

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH----HHHHHHHccCCh
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA----LMVSVLARAGLF   78 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~----~li~~~~~~g~~   78 (282)
                      |+..|++++|++..+....   +  +....+  +..+.+.-+++-|....+  ..+. +..|.+    ++|......+.+
T Consensus       118 ~~~~~~~deAl~~~~~~~~---l--E~~Al~--VqI~lk~~r~d~A~~~lk~mq~id-ed~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  118 YMHDGDFDEALKALHLGEN---L--EAAALN--VQILLKMHRFDLAEKELKKMQQID-EDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             hhcCCChHHHHHHHhccch---H--HHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHhccchhh
Confidence            5556666666666655221   1  222222  222344455555555555  2222 223333    444444445667


Q ss_pred             HHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686           79 DEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        79 ~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~  146 (282)
                      .+|.-+|++|.  ..|+.-+-|.+..++...|++++|+.++++...-+|.++.+...+|-.---.|.-.+
T Consensus       190 qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  190 QDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             hhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            77777777775  567777777777777777777777777777776666666666555554444554433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.44  E-value=0.00048  Score=45.36  Aligned_cols=64  Identities=11%  Similarity=0.088  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHV-QVKTGKRVIDQLCELKP  125 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~p  125 (282)
                      ..+|..+-..+.+.|++++|+..|++.. ..|+ ...|..+-.+|.+.| ++++|.+.|++..+++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3455666666666666666666666632 4454 556666666666666 56666666666665555

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.44  E-value=0.0029  Score=56.70  Aligned_cols=115  Identities=15%  Similarity=0.061  Sum_probs=98.0

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~   80 (282)
                      +-..|++++|+..++.+..   -.||..-|..+.. .+.+.++.++|.+.++  ....|+ ....-.+-++|-+.|+..+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            4568999999999999877   5688887777666 6888999999999999  778887 5667788999999999999


Q ss_pred             HHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           81 ARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        81 A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      |.++++.-. -.| |...|..|-.+|...|+..+|.....++-.
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            999999865 244 588999999999999999999988887653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.0018  Score=58.84  Aligned_cols=113  Identities=12%  Similarity=0.030  Sum_probs=88.9

Q ss_pred             HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-----CCC----CHHHHHHHHHHHHhcC
Q 043686           41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-----MER----YPEVLRALLEGCRIHV  108 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~p----~~~~~~~li~~~~~~g  108 (282)
                      |.+.++++-|.+.|.  .++.| |+.+.+-+.-..-+.+.+.+|...|..-.     ..+    -..+++.|-.+|-+.+
T Consensus       390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~  469 (611)
T KOG1173|consen  390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN  469 (611)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence            555666777777776  77777 57777877777778888999999987742     111    1346788888899999


Q ss_pred             ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          109 QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       109 ~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ..++|...|++...+.|.++.+|.++.-.|...|+++.|...|..
T Consensus       470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK  514 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK  514 (611)
T ss_pred             hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence            999999999999999999999999999999999999999875544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.41  E-value=0.002  Score=46.85  Aligned_cols=90  Identities=11%  Similarity=0.029  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIML  134 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~L  134 (282)
                      .++-.+...+.+.|++++|.+.|+.+. ..|+    ...+..+...+.+.|++++|...|+......|++   ..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            356778888999999999999999874 3443    3567778999999999999999999999877764   3567778


Q ss_pred             HHHHHHcCchhhhhcccc
Q 043686          135 SNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       135 i~~y~~~g~~~~A~~~~~  152 (282)
                      ...|.+.|+.++|...+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~  100 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQ  100 (119)
T ss_pred             HHHHHHhCChHHHHHHHH
Confidence            888888888877765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.41  E-value=0.0021  Score=53.31  Aligned_cols=120  Identities=12%  Similarity=0.048  Sum_probs=87.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHhcC--------CCHHHHHHHhh--ccCCCChh-HH--
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACSTA--------GMVEEGWLCFN--RIRSPKVT-HH--   65 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~~~--------g~~~~a~~l~~--~g~~p~~~-~~--   65 (282)
                      ..|.+.|++++|+..|++..+   ..|+..    ++..+-.++.+.        |+.++|.+.|+  ....|+.. .+  
T Consensus        78 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a  154 (235)
T TIGR03302        78 YAYYKSGDYAEAIAAADRFIR---LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA  154 (235)
T ss_pred             HHHHhcCCHHHHHHHHHHHHH---HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence            467789999999999999987   334322    333333444443        78899999998  44455432 22  


Q ss_pred             ---------------HHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           66 ---------------ALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        66 ---------------~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                                     -.+...|.+.|+.++|...|++.. ..|+    ...|..+..++.+.|+.++|...++.+....|
T Consensus       155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                           145567889999999999999864 2332    57899999999999999999999998876555

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.39  E-value=0.0018  Score=48.37  Aligned_cols=26  Identities=12%  Similarity=0.127  Sum_probs=19.2

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN   55 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~   55 (282)
                      |..++.++|-++++.|+++....+.+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~   26 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIK   26 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            45677777777777777777777766

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.38  E-value=0.0032  Score=56.67  Aligned_cols=103  Identities=15%  Similarity=0.112  Sum_probs=75.8

Q ss_pred             hhhhcCChHHHHHHHHHhHHhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCC
Q 043686            4 GYSLHGQRELGLSLFSELEKKS--SIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGL   77 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~--g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~   77 (282)
                      .....-+++++..++.+.+. .  ...--..|..++|..|-+.|..+++.+++.    .|+-||.+|+|.|++.+-+.|+
T Consensus        75 ~~~~~~~~d~~~~~L~k~R~-s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~  153 (429)
T PF10037_consen   75 NVESKDDLDEVEDVLYKFRH-SPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGN  153 (429)
T ss_pred             hcCCHhHHHHHHHHHHHHHc-CcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhccc
Confidence            33444567778888888776 3  121222355699999999999999999998    9999999999999999999999


Q ss_pred             hHHHHHHHHhcC---CCCCHHHHHHHHHHHHhc
Q 043686           78 FDEARIFIQEYH---MERYPEVLRALLEGCRIH  107 (282)
Q Consensus        78 ~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~  107 (282)
                      +..|.++..+|.   .-.+..|+.--+.+|.+-
T Consensus       154 ~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  154 YKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999998865   223445555555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.37  E-value=0.012  Score=51.75  Aligned_cols=180  Identities=12%  Similarity=0.005  Sum_probs=117.6

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHH-HHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHH---HHHHHHccCC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAV-LHACSTAGMVEEGWLCFN--RIRSPK-VTHHAL---MVSVLARAGL   77 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~l-l~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~---li~~~~~~g~   77 (282)
                      +...|+.++|.+-+.+.....-..++...-..+ ...+...|++++|.++++  ....|+ ...+..   ........|.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~   95 (355)
T cd05804          16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGM   95 (355)
T ss_pred             HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccC
Confidence            344567777777776654412223343323222 224567899999999998  334554 444442   2222233566


Q ss_pred             hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686           78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                      .+.+.+.+.... ..|+ ......+...+...|++++|.+.+++..+..|+++..+..+...|...|++++|...+....
T Consensus        96 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l  175 (355)
T cd05804          96 RDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR  175 (355)
T ss_pred             chhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence            677777766532 3454 44556667789999999999999999999999998889999999999999999998554422


Q ss_pred             ecC----eE--E---EEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          156 FRN----KV--H---VFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       156 ~~~----~~--~---~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      ...    ..  +   .+-..+...|+.++|.    .++++..
T Consensus       176 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~----~~~~~~~  213 (355)
T cd05804         176 DTWDCSSMLRGHNWWHLALFYLERGDYEAAL----AIYDTHI  213 (355)
T ss_pred             hccCCCcchhHHHHHHHHHHHHHCCCHHHHH----HHHHHHh
Confidence            211    11  0   1233456788999988    6776664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.30  E-value=0.00078  Score=44.33  Aligned_cols=59  Identities=17%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-chhhhhccc
Q 043686           93 YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA-KWDVVNQAY  151 (282)
Q Consensus        93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g-~~~~A~~~~  151 (282)
                      +..+|..+-..+.+.|++++|...|++..+++|+++..|..+..+|.+.| ++++|.+.+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~   61 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDF   61 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999 788887643

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.30  E-value=0.00045  Score=45.32  Aligned_cols=60  Identities=18%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             HccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686           73 ARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM  133 (282)
Q Consensus        73 ~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~  133 (282)
                      .+.|++++|.++|++.. ..| |..++-.+..+|.+.|++++|.++++.+....|++ ..|..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~   63 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQ   63 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHH
Confidence            35688888888888864 455 57777788888888888888888888888888865 34433

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.30  E-value=0.0013  Score=58.26  Aligned_cols=85  Identities=11%  Similarity=0.003  Sum_probs=75.5

Q ss_pred             HHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686           69 VSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~  146 (282)
                      ...+.+.|++++|.++|++.. ..|+ ...|..+..+|.+.|++++|...++++..+.|++...|..+..+|...|++++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            345667899999999999864 5665 78889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccce
Q 043686          147 VNQAYSW  153 (282)
Q Consensus       147 A~~~~~~  153 (282)
                      |...+..
T Consensus        89 A~~~~~~   95 (356)
T PLN03088         89 AKAALEK   95 (356)
T ss_pred             HHHHHHH
Confidence            9986655

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.27  E-value=0.0049  Score=56.29  Aligned_cols=90  Identities=9%  Similarity=-0.052  Sum_probs=50.8

Q ss_pred             CChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           60 PKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      +|..+++.|-=.|--.|++++|.+.|+..- ++|+ -..||-|-..+++..+.++|...|.+..++.|.-+.+...|.=.
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            444555555555555666666666666532 4554 55566666666666666666666666666666544444444444


Q ss_pred             HHHcCchhhhhc
Q 043686          138 YAAEAKWDVVNQ  149 (282)
Q Consensus       138 y~~~g~~~~A~~  149 (282)
                      |.+.|.+.+|.+
T Consensus       508 ~mNlG~ykEA~~  519 (579)
T KOG1125|consen  508 CMNLGAYKEAVK  519 (579)
T ss_pred             hhhhhhHHHHHH
Confidence            555555555544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.25  E-value=0.0033  Score=49.61  Aligned_cols=87  Identities=13%  Similarity=-0.051  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      ...|..+...|.+.|++++|...|++.. ..|+    ...|..+...|.+.|++++|.+.+++.....|.+...+..+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4567888889999999999999999854 3333    4688999999999999999999999999999988888888889


Q ss_pred             HHHHcCchhhhh
Q 043686          137 WYAAEAKWDVVN  148 (282)
Q Consensus       137 ~y~~~g~~~~A~  148 (282)
                      .|...|+...+.
T Consensus       115 ~~~~~g~~~~a~  126 (172)
T PRK02603        115 IYHKRGEKAEEA  126 (172)
T ss_pred             HHHHcCChHhHh
Confidence            998888866654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.25  E-value=0.017  Score=44.23  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=39.5

Q ss_pred             HHHHccCChHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686           70 SVLARAGLFDEARIFIQEYH-MERYP----EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      +.+...|++++|...|+... -.||.    ...-.|...+...|++++|+..++.... .|..+..+..+-+.|.+.|+.
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~  134 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDY  134 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCH
Confidence            45555666666666665543 12221    2333345555566666666666544221 111224444555666666666


Q ss_pred             hhhhc
Q 043686          145 DVVNQ  149 (282)
Q Consensus       145 ~~A~~  149 (282)
                      ++|..
T Consensus       135 ~~A~~  139 (145)
T PF09976_consen  135 DEARA  139 (145)
T ss_pred             HHHHH
Confidence            66654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.24  E-value=0.0041  Score=48.88  Aligned_cols=82  Identities=11%  Similarity=-0.108  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      ...|..+...+...|++++|...|++.. ..|+    ..+|..+-..|.+.|+.++|.+.++....+.|....++..+..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4567778888889999999999999853 3333    3589999999999999999999999999999988888888888


Q ss_pred             HHHHcCc
Q 043686          137 WYAAEAK  143 (282)
Q Consensus       137 ~y~~~g~  143 (282)
                      .|...|+
T Consensus       115 i~~~~~~  121 (168)
T CHL00033        115 ICHYRGE  121 (168)
T ss_pred             HHHHhhH
Confidence            8885554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.22  E-value=0.0053  Score=52.60  Aligned_cols=134  Identities=11%  Similarity=0.061  Sum_probs=97.8

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCC
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSS-IEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGL   77 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~   77 (282)
                      |...-+.+..+.|..+|.+.++ .+ +..+.....+++.-+ ..++.+.|..+|+   .-+..+...|..-|+.+.+.|+
T Consensus         8 m~~~~r~~g~~~aR~vF~~a~~-~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d   85 (280)
T PF05843_consen    8 MRFMRRTEGIEAARKVFKRARK-DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND   85 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhCChHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence            3455566778999999999986 43 445555555555433 3467788999999   4455567888899999999999


Q ss_pred             hHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           78 FDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      .+.|..+|++.. ..|.    ...|...|.-=.+.|+++.+.++.+.+.+..|.+ .+...+++=|
T Consensus        86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry  150 (280)
T PF05843_consen   86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRY  150 (280)
T ss_dssp             HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHh
Confidence            999999999854 2333    3599999999999999999999999999888865 5555566655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.21  E-value=0.00095  Score=45.96  Aligned_cols=76  Identities=17%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             cCChHHHHHHHHHhHHhCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCC-hhHHHHHHHHHHccCChHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEI---DPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPK-VTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p---~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~-~~~~~~li~~~~~~g~~~~A~   82 (282)
                      .|++++|+.+|+++.+   ..|   +...+-.+-.++.+.|+.++|.++++ ....|+ ....-.+..+|.+.|++++|.
T Consensus         2 ~~~y~~Ai~~~~k~~~---~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLE---LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHH---HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHH---HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            4566666666666655   223   22222224444555555555555554 112221 112222334444445555555


Q ss_pred             HHHH
Q 043686           83 IFIQ   86 (282)
Q Consensus        83 ~l~~   86 (282)
                      ++|+
T Consensus        79 ~~l~   82 (84)
T PF12895_consen   79 KALE   82 (84)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.19  E-value=0.012  Score=52.58  Aligned_cols=115  Identities=8%  Similarity=0.040  Sum_probs=77.4

Q ss_pred             HHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHh-cC-CCCCHHHHHHHHHHHHhcCChhHH
Q 043686           39 HACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQE-YH-MERYPEVLRALLEGCRIHVQVKTG  113 (282)
Q Consensus        39 ~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~-m~-~~p~~~~~~~li~~~~~~g~~~~A  113 (282)
                      +.|--..+..+|.+++-  ..+.| |..+.+-|-+.|-+.|+-..|.+..-+ -. +.-|..|-.-|-+-|....-+++|
T Consensus       566 niye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~eka  645 (840)
T KOG2003|consen  566 NIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKA  645 (840)
T ss_pred             HHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHH
Confidence            33333444444444444  45555 467777888888888888888877654 23 444666666677777777788888


Q ss_pred             HHHHHHHHhcCCCChhHHHHHH-HHHHHcCchhhhhccccee
Q 043686          114 KRVIDQLCELKPLSAENYIMLS-NWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       114 ~~~~~~m~~~~p~~~~~~~~Li-~~y~~~g~~~~A~~~~~~~  154 (282)
                      ...|++..=+.| +..-|..+| +.+-+.|++.+|...+..+
T Consensus       646 i~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~  686 (840)
T KOG2003|consen  646 INYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDI  686 (840)
T ss_pred             HHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            888888877788 557888777 4556678888888755443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.16  E-value=0.017  Score=53.69  Aligned_cols=142  Identities=8%  Similarity=-0.006  Sum_probs=106.7

Q ss_pred             HHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--------c----------cCCCChhHH--HHHHHHH
Q 043686           13 LGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--------R----------IRSPKVTHH--ALMVSVL   72 (282)
Q Consensus        13 ~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~----------g~~p~~~~~--~~li~~~   72 (282)
                      .+...+..+.. .|++   .+|+.|-.-|......+-..+++.        .          .-.|+...|  .-+-..|
T Consensus       129 ~~~~yl~~~l~-KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy  204 (517)
T PF12569_consen  129 RLDEYLRPQLR-KGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY  204 (517)
T ss_pred             HHHHHHHHHHh-cCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence            34455555666 6764   356667666776666555555555        1          123444344  5567778


Q ss_pred             HccCChHHHHHHHHhc-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           73 ARAGLFDEARIFIQEY-HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        73 ~~~g~~~~A~~l~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      -..|+.++|.+.+++. ...|+ +..|.+-...|...|++++|.+.+++.+++++.|-..-+-.+..+.++|++++|.+.
T Consensus       205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8999999999999974 47888 678888888999999999999999999999998877788889999999999999996


Q ss_pred             cceeeecC
Q 043686          151 YSWIEFRN  158 (282)
Q Consensus       151 ~~~~~~~~  158 (282)
                      ++.....+
T Consensus       285 ~~~Ftr~~  292 (517)
T PF12569_consen  285 ASLFTRED  292 (517)
T ss_pred             HHhhcCCC
Confidence            55544433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.15  E-value=0.01  Score=45.35  Aligned_cols=111  Identities=13%  Similarity=0.090  Sum_probs=81.1

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCH-H-HH--HHHHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccC
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDP-L-TF--AAVLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAG   76 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~-~-ty--~~ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g   76 (282)
                      ..++...+...++.+.. ..  |+. . ..  -.+-..+...|++++|...|+  ..-.||.    ...-.|...+...|
T Consensus        23 ~~~~~~~~~~~~~~l~~-~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~   99 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAK-DY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG   99 (145)
T ss_pred             HCCCHHHHHHHHHHHHH-HC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence            47889999999999987 32  333 2 22  224467888999999999999  2222443    23345678888999


Q ss_pred             ChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686           77 LFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQL  120 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  120 (282)
                      ++++|...++..+ -......+..+-..|.+.|+.++|...|+..
T Consensus       100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            9999999998865 1223456667777899999999999999864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.07  E-value=0.00093  Score=43.79  Aligned_cols=50  Identities=10%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      .+.|++++|.+.|+++....|++...+..|...|.+.|++++|...+...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999998877664

...

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.06  E-value=0.021  Score=53.25  Aligned_cols=144  Identities=9%  Similarity=-0.036  Sum_probs=79.5

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      ..|++..|..++.+.-+   .-|+. ..|-.-++.-.....+++|+.+|.  .+..|+..+|.-=+..---.+++++|.+
T Consensus       596 ~agdv~~ar~il~~af~---~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r  672 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFE---ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR  672 (913)
T ss_pred             hcCCcHHHHHHHHHHHH---hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence            44666666666666544   22332 345555555566666666666666  5555555555544444444556666666


Q ss_pred             HHHhc-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           84 FIQEY-HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        84 l~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ++++- +.-|+ .-.|-.+-..+-+.++++.|.+.|..=.+..|..+..|.+|.+.=-+.|.+-+|..+++.
T Consensus       673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr  744 (913)
T KOG0495|consen  673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR  744 (913)
T ss_pred             HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence            66552 23444 334555555566666666666655554455555555555555555555555555554444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.02  E-value=0.018  Score=49.28  Aligned_cols=188  Identities=7%  Similarity=0.099  Sum_probs=120.5

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH--HHHHHHHHHhcCCCHHHHHHHhh-ccCCC--ChhHHHHHHHHHHccCCh
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL--TFAAVLHACSTAGMVEEGWLCFN-RIRSP--KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~--ty~~ll~a~~~~g~~~~a~~l~~-~g~~p--~~~~~~~li~~~~~~g~~   78 (282)
                      -|-+.|.+++|+++-..+.+..+..-+..  ..--|-.-|..+|.+|.|..+|. .--.|  -....--|+..|-...++
T Consensus        78 LfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW  157 (389)
T COG2956          78 LFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREW  157 (389)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHH
Confidence            46677888888888887665122322222  23345556778888888888887 11112  133455677888888888


Q ss_pred             HHHHHHHHhcC-CCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           79 DEARIFIQEYH-MERY------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ++|.++-++.. ..|.      ..-|.-|-..+....++++|..++++..+.+|..+..-..|-+.+...|++..|.+..
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~  237 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEAL  237 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHH
Confidence            88888777643 2222      1235555556666677888888888888778877777777778888888888888766


Q ss_pred             ceeeecCeE------EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccC
Q 043686          152 SWIEFRNKV------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPK  195 (282)
Q Consensus       152 ~~~~~~~~~------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd  195 (282)
                      ..+...+.-      ..+..+|...|+.++..    ..+.++.+.--.|+
T Consensus       238 e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~----~fL~~~~~~~~g~~  283 (389)
T COG2956         238 ERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL----NFLRRAMETNTGAD  283 (389)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHccCCcc
Confidence            655544432      45666777777777765    55566555443333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.98  E-value=0.014  Score=55.94  Aligned_cols=113  Identities=14%  Similarity=0.053  Sum_probs=94.3

Q ss_pred             cCCCHHHHHHHhh--ccCCC--ChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHH
Q 043686           43 TAGMVEEGWLCFN--RIRSP--KVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        43 ~~g~~~~a~~l~~--~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      +.+...++..-|-  ..+.|  ++..|.-+.++|-+.|++.+|.++|..+.   ..-+...|--+-.+|...|..++|.+
T Consensus       391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e  470 (895)
T KOG2076|consen  391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE  470 (895)
T ss_pred             cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence            3444555555444  44333  56788999999999999999999999976   23357899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686          116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                      .|+......|++...-.+|-..|-+.|+.|+|.+..+.+.
T Consensus       471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  471 FYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            9999999999999999999999999999999999777754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.016  Score=52.08  Aligned_cols=110  Identities=10%  Similarity=0.105  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686           44 AGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQL  120 (282)
Q Consensus        44 ~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  120 (282)
                      .|++..|+++|+  ....|+...|.+.|+.=-+-..++.|..+++... +.|++.+|---..-=-++|++.-|..+|+..
T Consensus       154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            455666666666  5666666666666666666666666666666644 5566666655555555666666666666665


Q ss_pred             HhcCCCC---hhHHHHHHHHHHHcCchhhhhcccce
Q 043686          121 CELKPLS---AENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       121 ~~~~p~~---~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ...-.++   ...++++...=.++...+.|.-++..
T Consensus       234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky  269 (677)
T KOG1915|consen  234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY  269 (677)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5321111   23334443333444445555444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.97  E-value=0.012  Score=54.74  Aligned_cols=66  Identities=14%  Similarity=-0.016  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      ...|.++--.....|++++|...|++.. ..|+...|..+...|...|+.++|.+.|++...++|.+
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            4455555444445566666666666644 55666666666666666666666666666666666644

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.92  E-value=0.013  Score=53.67  Aligned_cols=139  Identities=16%  Similarity=0.086  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHh
Q 043686           11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQE   87 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~   87 (282)
                      ..+..++|-++-...+.++|...++.|--.|--.|.+++|...|+  .-+.| |...||-|...+++..+-++|...|.+
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r  489 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR  489 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence            445667777775535655666666666666888899999999999  88888 578999999999999999999999998


Q ss_pred             cC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHcCchhhhhc
Q 043686           88 YH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL----------SAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        88 m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~----------~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .. ++|+ +.++..|--+|.+.|.+++|.+.|-....+.+.          +-..|.+|=.++.-.++.|-+.+
T Consensus       490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            65 8998 778888999999999999999999987743221          12578888777777777664443

>PLN02789 farnesyltranstransferase

Probab=96.90  E-value=0.046  Score=47.76  Aligned_cols=135  Identities=9%  Similarity=-0.056  Sum_probs=100.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCC-CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAG-MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g-~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      .+...++.++|+.++.+...   +.|+.. .|+.--..+...| .++++...++  ....| +..+|+..--.+.+.|+.
T Consensus        46 ~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         46 VYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence            45667889999999999887   567665 3443333455556 5789999988  44445 456777665556666653


Q ss_pred             --HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           79 --DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        79 --~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                        +++.++++++- ..| |..+|+...-.+.+.|++++|++.++++.+.+|.+...|+-....+.+.
T Consensus       123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence              67788887765 455 5889999999999999999999999999999998888888766555544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=0.019  Score=51.55  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=34.7

Q ss_pred             CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 043686            9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQ   86 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~   86 (282)
                      |++..|.++|.+-.+   ..|+.-.|.+.|+-=.+-...+.|+++++  .-+.|++.+|--....=-++|++.-|.++|+
T Consensus       155 gNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye  231 (677)
T KOG1915|consen  155 GNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE  231 (677)
T ss_pred             cccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            444444444444333   34444444444444444444444444444  3333444444444444444444444444444


Q ss_pred             h
Q 043686           87 E   87 (282)
Q Consensus        87 ~   87 (282)
                      .
T Consensus       232 r  232 (677)
T KOG1915|consen  232 R  232 (677)
T ss_pred             H
Confidence            3

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.88  E-value=0.0056  Score=40.59  Aligned_cols=60  Identities=12%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             HHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh
Q 043686           70 SVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE  129 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~  129 (282)
                      ..|.+.+++++|.++++.+. ..|+ ...|...-..|.+.|++++|.+.|+...+..|+++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            56888999999999999875 5665 778888888999999999999999999999996643

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.83  E-value=0.016  Score=56.73  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=90.4

Q ss_pred             CCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh-hHHHHHHHHHHccCChHHHHHHHHhcC-CCCCH-------
Q 043686           27 IEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV-THHALMVSVLARAGLFDEARIFIQEYH-MERYP-------   94 (282)
Q Consensus        27 ~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~-------   94 (282)
                      ..|+ ...+..|+..+-..+++++|.++.+  ....|+. ..|-.+...|.+.++.++|..+ .-.. +..+.       
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHH
Confidence            4443 4567778888888888888888888  4555553 2333333366666766666665 2221 22233       


Q ss_pred             ------------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           95 ------------EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        95 ------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                                  ..+-+|..+|-+.|+.++|..++++..+.+|.|+...|-+.-.|... ++++|..
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence                        56777888899999999999999999999999999999999999999 9999988

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.81  E-value=0.013  Score=45.19  Aligned_cols=88  Identities=9%  Similarity=-0.064  Sum_probs=73.9

Q ss_pred             HHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCh
Q 043686           36 AVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQV  110 (282)
Q Consensus        36 ~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~  110 (282)
                      .+-.-+...|++++|..+|+  .-+.|. ..-|-.|--++-..|++++|.+.|...- ..|| ..++-.+-.++.+.|+.
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~  119 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence            33445677899999999999  777885 4556689999999999999999999854 5676 78888899999999999


Q ss_pred             hHHHHHHHHHHhc
Q 043686          111 KTGKRVIDQLCEL  123 (282)
Q Consensus       111 ~~A~~~~~~m~~~  123 (282)
                      +.|.+.|+.....
T Consensus       120 ~~A~~aF~~Ai~~  132 (157)
T PRK15363        120 CYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998854

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.78  E-value=0.028  Score=49.26  Aligned_cols=112  Identities=9%  Similarity=-0.004  Sum_probs=91.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHccCC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g~   77 (282)
                      .-+.+.|+.++|.++..+-.+ .+..|+..    .+-.+.+.++.+.-....+     .+-.|  -.+.+|...|.+.+.
T Consensus       271 ~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~  343 (400)
T COG3071         271 ERLIRLGDHDEAQEIIEDALK-RQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKL  343 (400)
T ss_pred             HHHHHcCChHHHHHHHHHHHH-hccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhH
Confidence            346788999999999999888 77777732    2335666677666665555     44444  788899999999999


Q ss_pred             hHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           78 FDEARIFIQEY-HMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        78 ~~~A~~l~~~m-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      +.+|.+.|+.. +..|+..+|+-+-.++.+.|+.++|.+++++..
T Consensus       344 w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         344 WGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            99999999974 479999999999999999999999999999977

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.76  E-value=0.003  Score=59.11  Aligned_cols=176  Identities=14%  Similarity=0.078  Sum_probs=134.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      ..+.+.|-..+|+.+|++...          |--+|-.|...|+..+|.++..  ..-.||..-|..+.|....-.-+++
T Consensus       406 ell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk  475 (777)
T KOG1128|consen  406 ELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK  475 (777)
T ss_pred             HHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence            346677888889888888654          6667888889999999988888  3456788999999999998888999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee----e
Q 043686           81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE----F  156 (282)
Q Consensus        81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~  156 (282)
                      |.++++... ..-...|+.   -..+.++++++.+.|+.-.+++|-...+|-.+--++-+.+++..|.+.|..-.    .
T Consensus       476 awElsn~~s-arA~r~~~~---~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  476 AWELSNYIS-ARAQRSLAL---LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             HHHHhhhhh-HHHHHhhcc---ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            999998754 111112222   22337899999999999999999888999999999999999999998665422    1


Q ss_pred             cC-eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686          157 RN-KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP  196 (282)
Q Consensus       157 ~~-~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~  196 (282)
                      +. ..|.+-.+|.+.++..+|+    ..+.+-.+....|..
T Consensus       552 ~~eaWnNls~ayi~~~~k~ra~----~~l~EAlKcn~~~w~  588 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRLKKKKRAF----RKLKEALKCNYQHWQ  588 (777)
T ss_pred             chhhhhhhhHHHHHHhhhHHHH----HHHHHHhhcCCCCCe
Confidence            11 1277788888899999998    777777776665543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.74  E-value=0.018  Score=53.74  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=89.8

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      +|..++-..+|++...  .++-...-|-...+-.-.+|++..|+.++.  ....| +..+|-+-+..-....+++.|..+
T Consensus       563 hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~l  640 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDL  640 (913)
T ss_pred             cCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence            4666666777777654  132233344444455666777777777776  33444 355677777777777777777777


Q ss_pred             HHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           85 IQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        85 ~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      |.+.. ..|...+|.-=+.----.+++++|.+++++..+.-|+-...|-.+-..|-..++++.|..
T Consensus       641 lakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  641 LAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             HHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence            77654 456666665555544445677777777777777777666667777777777777777776

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.73  E-value=0.0028  Score=41.16  Aligned_cols=53  Identities=13%  Similarity=0.176  Sum_probs=46.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686          100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +...+.+.|++++|.+.|++..+..|.++..+..+...|...|++++|...+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~   55 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYE   55 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999976544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.73  E-value=0.008  Score=56.64  Aligned_cols=106  Identities=11%  Similarity=0.084  Sum_probs=79.3

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      .+-.+...|.+|+.+++.++. ....  +--|.-+-+-|++.|+++.|.++|- .+      .++--|++|+++|++++|
T Consensus       740 eaai~akew~kai~ildniqd-qk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da  810 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQD-QKTA--SGYYGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDA  810 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhh-hccc--cccchHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHH
Confidence            445667788899999998877 4332  2346777788999999999999998 33      456678999999999999


Q ss_pred             HHHHHhcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 043686           82 RIFIQEYHMERY--PEVLRALLEGCRIHVQVKTGKRVID  118 (282)
Q Consensus        82 ~~l~~~m~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~  118 (282)
                      .++-.+.. .|.  ...|-+-..-.-++|++.+|+++|-
T Consensus       811 ~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  811 FKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             HHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence            99988855 443  5566666666778888877777654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0089  Score=52.74  Aligned_cols=142  Identities=14%  Similarity=0.069  Sum_probs=88.0

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHHHccCCh
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVLARAGLF   78 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~~~~g~~   78 (282)
                      .+-.++...|..+|--.....-++-|+.-..++-+.+...|+.++|...|+  ..+.|+.+    .|..|+.   +.|+.
T Consensus       206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---~eg~~  282 (564)
T KOG1174|consen  206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---QEGGC  282 (564)
T ss_pred             HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---hccCH
Confidence            344555566666665555423356667777888888888888888888888  66666533    2333332   23333


Q ss_pred             HHHH----------------------------------HHHHhc-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           79 DEAR----------------------------------IFIQEY-HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        79 ~~A~----------------------------------~l~~~m-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      ++..                                  .+-++- ...|+ +..|-.=-..+.+.|+.++|.=.|+..+.
T Consensus       283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence            3322                                  222221 12232 22232222346677888888888888888


Q ss_pred             cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          123 LKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       123 ~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.|.+..+|--|+..|.-.|++.+|.-
T Consensus       363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~  389 (564)
T KOG1174|consen  363 LAPYRLEIYRGLFHSYLAQKRFKEANA  389 (564)
T ss_pred             cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence            888777888888888888888888765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.71  E-value=0.0023  Score=35.88  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          117 IDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       117 ~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      |++..+++|+++.+|+.|-..|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            566778899999999999999999999999863

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.67  E-value=0.0068  Score=36.09  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS  135 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li  135 (282)
                      +|..+-..|.+.|++++|.++|++..+..|+++..+..|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            6778889999999999999999999999999988877664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.65  E-value=0.039  Score=40.80  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDP--LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAG   76 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~--~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g   76 (282)
                      +-..|+.++|+.+|++-.. .|+.+..  ..+-.+-+.+...|++++|..+++  ..-.|+    ......+-.++...|
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            4456777777777777666 6655442  233344445556666666666666  111122    111122233455556


Q ss_pred             ChHHHHHHHHh
Q 043686           77 LFDEARIFIQE   87 (282)
Q Consensus        77 ~~~~A~~l~~~   87 (282)
                      +.++|.+.+-.
T Consensus        90 r~~eAl~~~l~  100 (120)
T PF12688_consen   90 RPKEALEWLLE  100 (120)
T ss_pred             CHHHHHHHHHH
Confidence            66666665544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.58  E-value=0.022  Score=46.17  Aligned_cols=111  Identities=18%  Similarity=0.203  Sum_probs=55.3

Q ss_pred             CCCHHHHHHHHHHHhcC-----CCHH---HHHHHhh-ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHH
Q 043686           28 EIDPLTFAAVLHACSTA-----GMVE---EGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLR   98 (282)
Q Consensus        28 ~p~~~ty~~ll~a~~~~-----g~~~---~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~   98 (282)
                      ..|..+|..+|..+.+.     |-++   .|..-.. .|+.-|..+|+.|++.+=| |.+- -..+|+.+-        +
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------~  113 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------M  113 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------c
Confidence            45667777777776654     2222   2222222 6777777777777776655 2211 111111110        0


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchh-hhhcccceee
Q 043686           99 ALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWD-VVNQAYSWIE  155 (282)
Q Consensus        99 ~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~-~A~~~~~~~~  155 (282)
                            -.-.+-+-|.+++++|.  ++-|+. .++..|++.+++.+..- +..+..-||+
T Consensus       114 ------hyp~Qq~c~i~lL~qME~~gV~Pd~-Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  114 ------HYPRQQECAIDLLEQMENNGVMPDK-ETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             ------cCcHHHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence                  00112345666666666  456643 66666666666665432 3333444443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.56  E-value=0.023  Score=48.68  Aligned_cols=117  Identities=9%  Similarity=0.055  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGC  104 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~  104 (282)
                      .+|..+++..-+.+.++.|+.+|.     ..+..++....+++..+ ..++.+.|.++|+...  +..+...|..-|.-+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            578889999999888999999999     22334444445555443 3467777999999853  666788899999999


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCchhhhhc
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSA---ENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~---~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .+.++.+.|..+|+.....-|...   ..|...++.=.+.|+++.+.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~  128 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK  128 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999985544332   478888888888888877766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.53  E-value=0.043  Score=40.97  Aligned_cols=81  Identities=15%  Similarity=0.253  Sum_probs=66.5

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhc--------------C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEY--------------H----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m--------------~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      |..++.++|-++++.|+++....+++..              +    ..|+..+..+++.+|+.+|++..|.++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            4578999999999999999999999763              1    458899999999999999999999999999884


Q ss_pred             cC--CCChhHHHHHHHHHHHc
Q 043686          123 LK--PLSAENYIMLSNWYAAE  141 (282)
Q Consensus       123 ~~--p~~~~~~~~Li~~y~~~  141 (282)
                      .-  |....+|..|+......
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHh
Confidence            32  22347888888765444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.52  E-value=0.04  Score=53.43  Aligned_cols=147  Identities=7%  Similarity=0.005  Sum_probs=90.7

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH----HHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH----ACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG   76 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~----a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g   76 (282)
                      ++.+-|+.+.|+..|.+..+   +.|+.+.-...|.    ..-.+..+..|..++.  ....| |++..+.|-..|.-.|
T Consensus       208 Cf~kl~~~~~a~~a~~ralq---Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~  284 (1018)
T KOG2002|consen  208 CFWKLGMSEKALLAFERALQ---LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK  284 (1018)
T ss_pred             HHHhccchhhHHHHHHHHHh---cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence            44566777777777777665   4554433222222    1222334555555555  33333 4556666777777778


Q ss_pred             ChHHHHHHHHhcC----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCchhhhhcc
Q 043686           77 LFDEARIFIQEYH----MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS-AENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        77 ~~~~A~~l~~~m~----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +...++.+...+.    ..+- ..+|.-+-.+|...|++++|...|-+..+..|++ +-.+.-|..+|.+.|+++.|..-
T Consensus       285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~  364 (1018)
T KOG2002|consen  285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC  364 (1018)
T ss_pred             cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence            8888777776653    1111 3456667778888888888888888877777766 44455677778888887777764


Q ss_pred             cce
Q 043686          151 YSW  153 (282)
Q Consensus       151 ~~~  153 (282)
                      |+.
T Consensus       365 fEk  367 (1018)
T KOG2002|consen  365 FEK  367 (1018)
T ss_pred             HHH
Confidence            433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.019  Score=52.17  Aligned_cols=99  Identities=13%  Similarity=-0.001  Sum_probs=59.5

Q ss_pred             HHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHH
Q 043686           40 ACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGK  114 (282)
Q Consensus        40 a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~  114 (282)
                      +...+|+++.|...|-  ..+.| |-+.|+.-..+|.+.|++++|.+=-.+-. ..|+ .-.|+-+-.+..-.|++++|.
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~   90 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI   90 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence            3445566666666665  44444 45556666666666666666655443322 4566 456666666666666666666


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHH
Q 043686          115 RVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus       115 ~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      ..|.+-.+.+|++...++-|.+++
T Consensus        91 ~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   91 LAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHhhcCCchHHHHHhHHHhh
Confidence            666666666666666666666665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.11  Score=46.20  Aligned_cols=141  Identities=11%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHH---HHHHHccC
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALM---VSVLARAG   76 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~l---i~~~~~~g   76 (282)
                      .+...|++++|.-.|+..+.   +.| +...|-.|+..|...|.+++|.-.-.   .-+..+..+.+-+   +...--. 
T Consensus       343 lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~-  418 (564)
T KOG1174|consen  343 LLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR-  418 (564)
T ss_pred             HHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch-
Confidence            34567888888888888766   554 45688888888888888888776555   1111122222211   1111111 


Q ss_pred             ChHHHHHHHHh-cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQE-YHMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~-m~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      --++|.+++++ ..++|+ .-.-+.+-.-+...|..+.+..+++.-....||. ...+.|.+.+.-...+.+|..
T Consensus       419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~  492 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAME  492 (564)
T ss_pred             hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHH
Confidence            12455555554 224555 3344444455555566666666666665555533 555556666555555555555

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.48  E-value=0.012  Score=39.58  Aligned_cols=61  Identities=13%  Similarity=0.065  Sum_probs=42.6

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-----CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-----ME---RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      ..+|+.+-..|...|++++|++.|++..     ..   |+ ..+++.|-..|...|++++|++.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3467777778888888888888777632     22   22 56677777888888888888888877653

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.47  E-value=0.06  Score=50.21  Aligned_cols=125  Identities=12%  Similarity=0.133  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHHHHHHhc--CC---CHHHHHHHhh--ccCCCC-hhHHHHHHHHHHcc--------CChHHHHHHHHhcC
Q 043686           26 SIEIDPLTFAAVLHACST--AG---MVEEGWLCFN--RIRSPK-VTHHALMVSVLARA--------GLFDEARIFIQEYH   89 (282)
Q Consensus        26 g~~p~~~ty~~ll~a~~~--~g---~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~--------g~~~~A~~l~~~m~   89 (282)
                      +...|...|...+.|...  .+   ..+.|.++|+  ....|| ...|..+..+|...        .++..+.+...+..
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            355777899999998554  22   3779999999  778887 55666554444322        12344455554421


Q ss_pred             ----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           90 ----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        90 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                          ...+..+|.++--.....|++++|...++++..++| +..+|..+...|...|+.++|...+
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                123457788776666678999999999999999999 5789999999999999988886533

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=96.45  E-value=0.049  Score=39.49  Aligned_cols=73  Identities=12%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             HHHHHHHccCChHHHHHHHHhcC---C-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHH--hcCCCChhHHH
Q 043686           67 LMVSVLARAGLFDEARIFIQEYH---M-ERYPEVLRALLEGCRIHV--------QVKTGKRVIDQLC--ELKPLSAENYI  132 (282)
Q Consensus        67 ~li~~~~~~g~~~~A~~l~~~m~---~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~--~~~p~~~~~~~  132 (282)
                      ..|.-+...+++.....+|...+   + .|.+.+||.++.+-++..        .+-+.+.+|+.|.  ++.|++ .||+
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~-etYn  108 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND-ETYN  108 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH-HHHH
Confidence            33444444466666666665554   4 566666666666554442        2335566666666  567744 7777


Q ss_pred             HHHHHHHH
Q 043686          133 MLSNWYAA  140 (282)
Q Consensus       133 ~Li~~y~~  140 (282)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            77776654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.43  E-value=0.027  Score=47.68  Aligned_cols=92  Identities=11%  Similarity=0.066  Sum_probs=76.8

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHH-HHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTF-AAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty-~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~   80 (282)
                      +.+.+++++|+..|.+-..   +.|+-.+| ..=-.||++.|..+.|.+--+  ..+.|. ..+|..|--+|...|++++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            5688999999999999988   77765554 455568999999999988777  667775 6799999999999999999


Q ss_pred             HHHHHHhcC-CCCCHHHHHH
Q 043686           81 ARIFIQEYH-MERYPEVLRA   99 (282)
Q Consensus        81 A~~l~~~m~-~~p~~~~~~~   99 (282)
                      |.+.|++.. +.|+-.+|-.
T Consensus       168 A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHHhhhccCCCcHHHHH
Confidence            999999855 8998666643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.39  E-value=0.048  Score=51.70  Aligned_cols=131  Identities=19%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      .-|+..|+++.|.++|-+--.          ++--|..|.+.|+.++|..+-+  .|-......|-+--.-+-+.|++.+
T Consensus       773 dhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~e  842 (1636)
T KOG3616|consen  773 DHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAE  842 (1636)
T ss_pred             HHhccchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhh
Confidence            457788888888888876432          4556778888888888888887  6666667777777777788888888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-------------cC--C---------CChhHHHHHHH
Q 043686           81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE-------------LK--P---------LSAENYIMLSN  136 (282)
Q Consensus        81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~--p---------~~~~~~~~Li~  136 (282)
                      |++++-... .|+.     -|..|-++|..+...++.++--+             ++  .         -...-|.+-++
T Consensus       843 aeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavn  916 (1636)
T KOG3616|consen  843 AEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVN  916 (1636)
T ss_pred             hhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHH
Confidence            888877766 6663     34566777777766666543210             00  0         01234567888


Q ss_pred             HHHHcCchhhhhc
Q 043686          137 WYAAEAKWDVVNQ  149 (282)
Q Consensus       137 ~y~~~g~~~~A~~  149 (282)
                      +|-..+.|++|.+
T Consensus       917 myk~s~lw~dayr  929 (1636)
T KOG3616|consen  917 MYKASELWEDAYR  929 (1636)
T ss_pred             HhhhhhhHHHHHH
Confidence            8888888888887

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.38  E-value=0.049  Score=51.63  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=96.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHh-h-ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCC
Q 043686           35 AAVLHACSTAGMVEEGWLCF-N-RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQ  109 (282)
Q Consensus        35 ~~ll~a~~~~g~~~~a~~l~-~-~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~  109 (282)
                      ...-..+.+.+..++|...+ + .++.| ...+|.-....+-..|+.++|.+.|...- +.|| +.+-+++-..+.+.|+
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~  733 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS  733 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            34455677888888888444 4 66667 45677777788888999999999998865 7887 7889999999999998


Q ss_pred             hhHHHH--HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          110 VKTGKR--VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       110 ~~~A~~--~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      -.-|..  ++.++.+++|.+...|--|-..+-+.|+.++|-.
T Consensus       734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE  775 (799)
T ss_pred             cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence            888888  9999999999999999999999999999998865

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.38  E-value=0.0063  Score=40.35  Aligned_cols=52  Identities=10%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ..|.+.+++++|.++++.+..+.|+++..|.....+|.+.|++++|.+.++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~   54 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLER   54 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence            5688999999999999999999999999999999999999999999775554

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.33  E-value=0.029  Score=45.56  Aligned_cols=97  Identities=13%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI   85 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~   85 (282)
                      .+.|+++=-...++.|.+ .|+.-|..+|+.||+.+=+ |.+           .|......... -|  -.+-+-|.+++
T Consensus        63 ~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~f-----------vp~n~fQ~~F~-hy--p~Qq~c~i~lL  126 (228)
T PF06239_consen   63 RRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKF-----------VPRNFFQAEFM-HY--PRQQECAIDLL  126 (228)
T ss_pred             CCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCc-----------ccccHHHHHhc-cC--cHHHHHHHHHH
Confidence            356888888889999999 9999999999999998776 332           23222222222 12  23667899999


Q ss_pred             HhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           86 QEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        86 ~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ++|.   +.||..|+..|+..+++.+.   +.+-+.+|.
T Consensus       127 ~qME~~gV~Pd~Et~~~ll~iFG~~s~---p~~K~~rmm  162 (228)
T PF06239_consen  127 EQMENNGVMPDKETEQMLLNIFGRKSH---PMKKYRRMM  162 (228)
T ss_pred             HHHHHcCCCCcHHHHHHHHHHhccccH---HHHHHHHHH
Confidence            9997   88999999999999966654   444455443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.04  Score=47.89  Aligned_cols=147  Identities=12%  Similarity=0.050  Sum_probs=101.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcC----CCHHHHHHHhh----ccCCCChh-HHHHHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTA----GMVEEGWLCFN----RIRSPKVT-HHALMVSVLA   73 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~----g~~~~a~~l~~----~g~~p~~~-~~~~li~~~~   73 (282)
                      =|.+.+++.+|..+.+++.-   ..|-......++. ++++.    ..++.|.+.|.    .+...|.. ---++-..+.
T Consensus       294 YyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF  370 (557)
T KOG3785|consen  294 YYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF  370 (557)
T ss_pred             eecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence            36788999999999888643   5565555555544 23332    23667888887    44444433 3346666666


Q ss_pred             ccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH-HHHHHHHHcCchhhhhc
Q 043686           74 RAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI-MLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        74 ~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~-~Li~~y~~~g~~~~A~~  149 (282)
                      -.-++|++.-.++.+.   ..-|...|| +..+++-.|+..+|+++|-...+.+-.+..+|- .|.+.|.++++..-|+.
T Consensus       371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~  449 (557)
T KOG3785|consen  371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD  449 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence            6678899888888876   345566666 788899999999999999888754423446664 56688999999888887


Q ss_pred             cccee
Q 043686          150 AYSWI  154 (282)
Q Consensus       150 ~~~~~  154 (282)
                      .+-.+
T Consensus       450 ~~lk~  454 (557)
T KOG3785|consen  450 MMLKT  454 (557)
T ss_pred             HHHhc
Confidence            55443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.26  E-value=0.065  Score=45.42  Aligned_cols=96  Identities=10%  Similarity=0.073  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRAL  100 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~l  100 (282)
                      ..|..-+....+.|++++|...|+  ....|+.    ..+-.+...|...|++++|...|+.+. ..|+    ...+-.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            355555555566688888888887  4444543    356677778888888888888887763 2233    3445555


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686          101 LEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus       101 i~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      ...|...|+.++|.++|++.....|++
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP~s  250 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYPGT  250 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            666777888888888888888777754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.23  E-value=0.018  Score=51.79  Aligned_cols=64  Identities=8%  Similarity=-0.038  Sum_probs=54.9

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHh-cCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQE-YHMERYP----EVLRALLEGCRIHVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  124 (282)
                      +...++.+..+|.+.|++++|...|++ +.+.||.    .+|+.+-.+|.+.|+.++|.+.+++..++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            366788999999999999999999988 4478873    468999999999999999999999998763

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.12  E-value=0.1  Score=52.77  Aligned_cols=144  Identities=10%  Similarity=0.054  Sum_probs=113.7

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      .|.-+...++|++..+ . +. -...|..|..-|.+.+..++|-++++   ..+.-...+|...++.+-+..+-+.|..+
T Consensus      1510 yG~eesl~kVFeRAcq-y-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l 1586 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQ-Y-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL 1586 (1710)
T ss_pred             hCcHHHHHHHHHHHHH-h-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH
Confidence            4556777888988876 2 22 23568889999999999999999999   44555678899999999999999999999


Q ss_pred             HHh-cCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686           85 IQE-YHMERY---PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus        85 ~~~-m~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      +.+ |++-|.   +..-.-.+.-=.+.|+.+++..+|+....-.|.-...|+..|++=.+.|+.+.++.+|++.
T Consensus      1587 L~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1587 LKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred             HHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            987 445554   2233333344467799999999999998888887889999999999999999999888775

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.04  E-value=0.042  Score=46.58  Aligned_cols=92  Identities=9%  Similarity=-0.031  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH---HH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERYP----EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY---IM  133 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~---~~  133 (282)
                      ...|..-+..+.+.|++++|...|+.+. ..|+.    .++-.+...|...|++++|...|+.+....|+++...   --
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3457777777777899999999999965 45653    5778888999999999999999999998877654444   44


Q ss_pred             HHHHHHHcCchhhhhcccce
Q 043686          134 LSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +...|.+.|+.++|...+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~  242 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQ  242 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            46668788888888775544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.02  E-value=0.17  Score=48.94  Aligned_cols=133  Identities=18%  Similarity=0.086  Sum_probs=106.6

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHh--cCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACS--TAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~--~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ....++...|+....+..+   =-||. .|..+++|+.  +.|+.++|..+++  .+..| |..|..++..+|...|+.|
T Consensus        19 ~ld~~qfkkal~~~~kllk---k~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLK---KHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHH---HCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence            4457888999999998766   23665 4666777655  7899999999999  55555 6889999999999999999


Q ss_pred             HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           80 EARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      +|..+++... ..|+..-...+-.+|.|.+++.+-.++--++-+..|.++..+=+.++.+...
T Consensus        95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs  157 (932)
T KOG2053|consen   95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQS  157 (932)
T ss_pred             HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHh
Confidence            9999999864 6788888888999999999998877777677677887766666677766554

>PRK15331 chaperone protein SicA; Provisional

Probab=96.01  E-value=0.1  Score=40.50  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=75.5

Q ss_pred             ccCCCCh-hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           56 RIRSPKV-THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        56 ~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      .|++++. ...-+.---+-..|++++|+.+|.-.- ..| |..-|..|-.+|-..+++++|...|....-+.++|+..+-
T Consensus        30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence            4666652 222334444557899999999999854 344 4556788888888899999999999998877777777777


Q ss_pred             HHHHHHHHcCchhhhhccccee
Q 043686          133 MLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       133 ~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      -+-..|...|+.+.|...|...
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHH
Confidence            8888999999999998876654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=0.21  Score=41.83  Aligned_cols=110  Identities=13%  Similarity=0.090  Sum_probs=79.4

Q ss_pred             HHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHHHH----HhcCChhHH
Q 043686           39 HACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLEGC----RIHVQVKTG  113 (282)
Q Consensus        39 ~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~~~----~~~g~~~~A  113 (282)
                      ..|.+.|++++|......+-  +......=+..+-|..++|-|++.+++|. .-| -.|.+-|-+++    ...+.+.+|
T Consensus       116 ~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq-~ided~tLtQLA~awv~la~ggek~qdA  192 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQ-QIDEDATLTQLAQAWVKLATGGEKIQDA  192 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHhccchhhhhH
Confidence            35889999999999998433  23333334455667788999999999998 333 44555444444    334668999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686          114 KRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       114 ~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      .-+|++|.+-.|+++.+-+-+.......|++++|..+.
T Consensus       193 fyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL  230 (299)
T KOG3081|consen  193 FYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLL  230 (299)
T ss_pred             HHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence            99999999744447788888888888889988887644

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.98  E-value=0.11  Score=48.43  Aligned_cols=168  Identities=11%  Similarity=0.014  Sum_probs=108.9

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH-Hhc-CCCHHHHHHHhh--------------------------
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA-CST-AGMVEEGWLCFN--------------------------   55 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a-~~~-~g~~~~a~~l~~--------------------------   55 (282)
                      -+.+.|++++|..+|..+..   --||..-|.-.+.. +.+ .+..+....+|.                          
T Consensus       228 l~~kl~~lEeA~~~y~~Ll~---rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~  304 (700)
T KOG1156|consen  228 LLMKLGQLEEAVKVYRRLLE---RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELK  304 (700)
T ss_pred             HHHHHhhHHhHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhH
Confidence            35678999999999999987   45888877776654 433 333333335554                          


Q ss_pred             ------------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhc----C------------C-CCCHHHH--HHHHHHH
Q 043686           56 ------------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEY----H------------M-ERYPEVL--RALLEGC  104 (282)
Q Consensus        56 ------------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m----~------------~-~p~~~~~--~~li~~~  104 (282)
                                  .|+.|   ++..+...|-.-...+--+++.-++    .            + .|....|  --++..|
T Consensus       305 ~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~  381 (700)
T KOG1156|consen  305 EIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY  381 (700)
T ss_pred             HHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence                        22222   4444444443322333222222222    1            1 4554444  4567779


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCC-----CCCCChHHHH
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGD-----VSCPRSEGIF  177 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~a~  177 (282)
                      -+.|+++.|+..++...+..|.-+.-|.+=.+++...|.+++|...++....-+..+.+|++-     .+..+.++|.
T Consensus       382 D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~  459 (700)
T KOG1156|consen  382 DKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAE  459 (700)
T ss_pred             HHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHH
Confidence            999999999999999999888767777777899999999999988776655555555555532     2356677776

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.95  E-value=0.16  Score=38.70  Aligned_cols=57  Identities=21%  Similarity=0.277  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      .+...++..+...|++++|.++.+.+...+|.+...|..||.+|...|+..+|.+.+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y  119 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVY  119 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            356667777888889999999999888888888888889999998888877775443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=95.87  E-value=0.095  Score=51.23  Aligned_cols=141  Identities=10%  Similarity=0.073  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHH
Q 043686           11 RELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQ   86 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~   86 (282)
                      ...|+..|-+-.+   +.|+- ..|+.|-.-|...-+...|+..|+  ..+.|+ .....+..+.|++..+++.|..+.-
T Consensus       474 ~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  474 SALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             HHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            5667766666554   33443 467778778888778888888888  667774 6678899999999999999998843


Q ss_pred             hcC-CCCC-HHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686           87 EYH-MERY-PEVLRALLEG--CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus        87 ~m~-~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      .-. ..|- ...||.+-.|  |-+.++..+|..-|+......|.+...|..|..+|-.+|+..-|.++|+..
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            322 1221 3344444443  777788888888888888888988888999999999999999998888554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.15  Score=43.35  Aligned_cols=105  Identities=12%  Similarity=0.061  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc--C-ChHHHHHHHHhcC-CCCC-HHHHHHHH
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARA--G-LFDEARIFIQEYH-MERY-PEVLRALL  101 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~--g-~~~~A~~l~~~m~-~~p~-~~~~~~li  101 (282)
                      |...|-.|-.+|.+.|+.+.|..-|.  ..+.| |...+..+-.++...  + ...+|.++|+++- .+|+ +.+-.-|-
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA  234 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA  234 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            44556666666666666666666665  33333 233333333333221  1 2335666666643 3443 44444455


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686          102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS  135 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li  135 (282)
                      ..+...|++.+|...++.|....|.+ ..+..+|
T Consensus       235 ~~afe~g~~~~A~~~Wq~lL~~lp~~-~~rr~~i  267 (287)
T COG4235         235 FAAFEQGDYAEAAAAWQMLLDLLPAD-DPRRSLI  267 (287)
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCCCC-CchHHHH
Confidence            55666666666666666666555544 4444444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.11  Score=45.25  Aligned_cols=88  Identities=15%  Similarity=0.032  Sum_probs=45.7

Q ss_pred             HHHHHhcCCCHHHHHHHhh--ccCC-CChhHHHH-HHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHH-HHHhcCCh
Q 043686           37 VLHACSTAGMVEEGWLCFN--RIRS-PKVTHHAL-MVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLE-GCRIHVQV  110 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~--~g~~-p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~-~~~~~g~~  110 (282)
                      +-.|.+..|+..+|.++|-  .|.. .|..+|.+ |-.+|.++++..-|++++-++. .|. ..+.--||. -|.+.+.+
T Consensus       399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~-t~~e~fsLLqlIAn~CYk~~eF  477 (557)
T KOG3785|consen  399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN-TPSERFSLLQLIANDCYKANEF  477 (557)
T ss_pred             HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHH
Confidence            4445555566666666665  3333 34455543 3355566666666666665555 332 233322332 35555665


Q ss_pred             hHHHHHHHHHHhcCC
Q 043686          111 KTGKRVIDQLCELKP  125 (282)
Q Consensus       111 ~~A~~~~~~m~~~~p  125 (282)
                      --|-+.|++...++|
T Consensus       478 yyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  478 YYAAKAFDELEILDP  492 (557)
T ss_pred             HHHHHhhhHHHccCC
Confidence            556666666555555

>PLN02789 farnesyltranstransferase

Probab=95.78  E-value=0.22  Score=43.55  Aligned_cols=122  Identities=6%  Similarity=-0.098  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccC-ChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAG-LFDEARIFIQEYH-MERY-PEVLRALLEGCRI  106 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g-~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~  106 (282)
                      +++.+-..+...++.++|..+.+  ..+.|+ ..+|+..-..+.+.| ++++|.+.++++. ..|+ ..+|+.---.+.+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~  118 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence            44455556667788999999988  566674 456666666777777 6899999998865 4554 6788877666667


Q ss_pred             cCCh--hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686          107 HVQV--KTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       107 ~g~~--~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      .|+.  +++..+++++.+.+|.+..+|+-..-.+.+.|++++|...++.+
T Consensus       119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~  168 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQL  168 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            7763  77899999999999999999999888888999999998855443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.31  Score=40.58  Aligned_cols=129  Identities=14%  Similarity=0.136  Sum_probs=66.5

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHH-HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHA-CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a-~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~   82 (282)
                      ..|+.+.|...++++.. . + |++.--..|=.. +-..|+.++|.++++  ..-.| |.++|---|-..--.|+--+|.
T Consensus        64 d~~~~~lAq~C~~~L~~-~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aI  140 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRD-R-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAI  140 (289)
T ss_pred             HhcchHHHHHHHHHHHH-h-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHH
Confidence            35566666666666554 1 2 443222221111 222456666666666  22223 4555554444444445555555


Q ss_pred             HHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           83 IFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        83 ~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +-+.+.-  +.-|...|.-|-.-|...|++++|.-.++++.=+.|.++..+--+.+.+
T Consensus       141 k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  141 KELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            5555432  4456666666666666666666666666666666665544444444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.72  E-value=0.13  Score=44.96  Aligned_cols=106  Identities=8%  Similarity=-0.036  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      .+.+.-|.-+...|+...|.++-++.+ .||..-|..-|.+|+..++|++-.++...  +-.|   +-|-.++..+.+.|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsP---IGyepFv~~~~~~~  251 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSP---IGYEPFVEACLKYG  251 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCC---CChHHHHHHHHHCC
Confidence            344444555666788888888888888 68888888888888888888866654332  2223   77888888888888


Q ss_pred             chhhhhcccceeeecCeEEEEecCCCCCCChHHHHH
Q 043686          143 KWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFW  178 (282)
Q Consensus       143 ~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~  178 (282)
                      ...+|......++....    +..|.+.|.+.+|.+
T Consensus       252 ~~~eA~~yI~k~~~~~r----v~~y~~~~~~~~A~~  283 (319)
T PF04840_consen  252 NKKEASKYIPKIPDEER----VEMYLKCGDYKEAAQ  283 (319)
T ss_pred             CHHHHHHHHHhCChHHH----HHHHHHCCCHHHHHH
Confidence            88888775555443222    333566777777763

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=95.65  E-value=0.23  Score=46.48  Aligned_cols=221  Identities=12%  Similarity=-0.024  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCChhHHHHHH------HHHHccCChHHHHHHHHhcC-CCCC-HHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKVTHHALMV------SVLARAGLFDEARIFIQEYH-MERY-PEVLR   98 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~~~~~~li------~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~   98 (282)
                      ..|..+.-+.--.|+...|..+.+     ..-.|+...|.-..      ....++|.+++|.+.+..-+ ..-| +..--
T Consensus       144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e  223 (700)
T KOG1156|consen  144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE  223 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence            356666666666788888888888     22246666665333      33467888999998887765 1223 33334


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh-ccc---ceeeecCeEEEEecCCCCCCChH
Q 043686           99 ALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN-QAY---SWIEFRNKVHVFGTGDVSCPRSE  174 (282)
Q Consensus        99 ~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~-~~~---~~~~~~~~~~~~i~~~~~~~~~~  174 (282)
                      +-..-+.+.+++++|..++.......|++...|-.+..++++.-+..++. .++   +....+...-.-+.-...+|  +
T Consensus       224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~--e  301 (700)
T KOG1156|consen  224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNG--E  301 (700)
T ss_pred             hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCc--c
Confidence            55566889999999999999999999999888888888887554444444 222   22222111100111111122  3


Q ss_pred             HHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHHHHH--hhhccC------------CCCC----eEEEe
Q 043686          175 GIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALS--FGLIST------------QVGA----TIHVT  236 (282)
Q Consensus       175 ~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~------------~~~~----~~~~~  236 (282)
                      +-.+.+...+..+.+.|+.|--..+.++...-.|..   ..++++..  ..+.++            ++++    ...+.
T Consensus       302 el~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~---~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la  378 (700)
T KOG1156|consen  302 ELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA---FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA  378 (700)
T ss_pred             hhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH---HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence            334445688888889997654444333322211222   12222211  112211            1111    11245


Q ss_pred             eccccccchHHHHHHHHHhhc
Q 043686          237 KNLRMRHICHDFAKAISKMVE  257 (282)
Q Consensus       237 ~~~~~~g~~~~a~~~~~~m~~  257 (282)
                      ..+-++|+++.|..+++.-.+
T Consensus       379 qh~D~~g~~~~A~~yId~AId  399 (700)
T KOG1156|consen  379 QHYDKLGDYEVALEYIDLAID  399 (700)
T ss_pred             HHHHHcccHHHHHHHHHHHhc
Confidence            556688888888888876554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.55  E-value=0.95  Score=36.13  Aligned_cols=122  Identities=9%  Similarity=0.029  Sum_probs=81.3

Q ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhc-CCCCC---HHHH
Q 043686           26 SIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEY-HMERY---PEVL   97 (282)
Q Consensus        26 g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~p~---~~~~   97 (282)
                      ...|++-.---|-.+..+.|+..||...|.   .|+-. |....-.+-.+....+++..|...++.. ...|+   ..+-
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            355776666677788888888888888888   66555 4556666777777778888888888774 22222   1123


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686           98 RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN  148 (282)
Q Consensus        98 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~  148 (282)
                      -.+-..|...|...+|+..|+.....-| ++..-.---.++.+.|+.++|.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~  213 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREAN  213 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHH
Confidence            3344567778888888888888887766 3333333445566777766653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.22  Score=48.57  Aligned_cols=132  Identities=11%  Similarity=0.108  Sum_probs=84.8

Q ss_pred             hhhcCChHHHHHHHHHhHHhCC-CCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHH--HHHHHHHHccCCh
Q 043686            5 YSLHGQRELGLSLFSELEKKSS-IEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHH--ALMVSVLARAGLF   78 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g-~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~--~~li~~~~~~g~~   78 (282)
                      |.-.|++..++.+...+.. .- ..| -..+|=-+-.++-..|++++|...|-  .+..||-+++  --|...|-+.|++
T Consensus       280 fyfK~dy~~v~~la~~ai~-~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl  358 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLAEHAIK-NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL  358 (1018)
T ss_pred             HhhcccHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence            4556788888888887766 22 111 12346666777778888888888887  6666665444  4677888888888


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHV----QVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      +.|...|+..- ..|| ..|...|-.-|...+    ..++|..+..+..+..|.++..|..+..+
T Consensus       359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql  423 (1018)
T KOG2002|consen  359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL  423 (1018)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            88888888753 4565 555555655566554    45566666666555566665555543333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.54  E-value=0.073  Score=40.55  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ....++..+...|++++|.++.+... ..| |...|-.+|.+|.+.|+..+|.++|+.+.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            44566677788999999999999865 555 58899999999999999999999999986

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.52  E-value=0.14  Score=50.43  Aligned_cols=116  Identities=10%  Similarity=0.059  Sum_probs=85.6

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhh-cc-CCCCh---------------
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFN-RI-RSPKV---------------   62 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~-~g-~~p~~---------------   62 (282)
                      ||..|-..+++++|.++.++-.+   ..|+...+-.+.. .+.+.++.+++..+ . .+ +..+.               
T Consensus        37 Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~i~~~  112 (906)
T PRK14720         37 LIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDKILLY  112 (906)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHHHHhh
Confidence            46778899999999999997666   5677654444333 45566777766666 5 11 22222               


Q ss_pred             ----hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           63 ----THHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        63 ----~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                          ..+-+|..+|-+.|+.++|.+++++.- ..|+ ..+.|.+-..|... ++++|.+++.+..
T Consensus       113 ~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        113 GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                556677788888899999999999965 6664 88888888888888 8888888888764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.46  E-value=0.13  Score=46.45  Aligned_cols=60  Identities=10%  Similarity=-0.083  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH   89 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~   89 (282)
                      +...++.+-.+|.+.|++++|...|+  ..+.|+.    ..|..+-.+|.+.|++++|.+.+++..
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45688888889999999999999999  7778874    358999999999999999999998854

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=95.43  E-value=0.64  Score=42.80  Aligned_cols=137  Identities=9%  Similarity=0.048  Sum_probs=97.8

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhhcc--CCCChhHH-HHHHHHHHccCChHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFNRI--RSPKVTHH-ALMVSVLARAGLFDEAR   82 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~~g--~~p~~~~~-~~li~~~~~~g~~~~A~   82 (282)
                      +..=++-|..+|.+.++ .+..| ++..++++|.-+|. ++.+.|.++|+.|  --+|...| ..-++-+...++-+.|.
T Consensus       378 R~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R  455 (656)
T KOG1914|consen  378 RAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNAR  455 (656)
T ss_pred             HhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHH
Confidence            44456778899999988 88888 77788888876664 6778899999933  23444444 58888888899999999


Q ss_pred             HHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCchh
Q 043686           83 IFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS----AENYIMLSNWYAAEAKWD  145 (282)
Q Consensus        83 ~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~----~~~~~~Li~~y~~~g~~~  145 (282)
                      .+|++..   ..||  ..+|..+|+-=.+.|++..+.++-+++...-|.+    -.+-..+++.|.-.+...
T Consensus       456 ~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  456 ALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             HHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence            9998854   3444  6789999998888899999988888877332211    123445667776555533

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.40  E-value=0.27  Score=42.89  Aligned_cols=106  Identities=16%  Similarity=0.174  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQV  110 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~  110 (282)
                      .+.+..|.-|...|....|..+-. ..+ ||..-|-..|.+|++.++|++-+++...=   ...+-|-..+..|.+.|+.
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~sk---KsPIGyepFv~~~~~~~~~  253 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKSK---KSPIGYEPFVEACLKYGNK  253 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhCC---CCCCChHHHHHHHHHCCCH
Confidence            355666777778888888888877 555 78888889999999999999888876542   2347788889999999999


Q ss_pred             hHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686          111 KTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus       111 ~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      .+|..+...+    |    . .--+.+|.++|++.+|.+.
T Consensus       254 ~eA~~yI~k~----~----~-~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  254 KEASKYIPKI----P----D-EERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHHhC----C----h-HHHHHHHHHCCCHHHHHHH
Confidence            9888887762    2    1 5567788899999888774

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.34  E-value=0.85  Score=38.19  Aligned_cols=143  Identities=8%  Similarity=-0.069  Sum_probs=90.9

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHH-HH---HHHHHHHhcCCCHHHHHHHhh--ccCCCC--hhHHHHHHHHHHc--
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPL-TF---AAVLHACSTAGMVEEGWLCFN--RIRSPK--VTHHALMVSVLAR--   74 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty---~~ll~a~~~~g~~~~a~~l~~--~g~~p~--~~~~~~li~~~~~--   74 (282)
                      +.+.|++++|++.|++...   .-|+.. .-   -.+..++-+.++.++|...++  ....|+  ..-|.-.+.+.+.  
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~  118 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA  118 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence            4568999999999999987   334442 22   234567889999999999998  333333  2233333444331  


Q ss_pred             c---------------CChH---HHHHHHHhcC-CCCC------HHH-----HH-------HHHHHHHhcCChhHHHHHH
Q 043686           75 A---------------GLFD---EARIFIQEYH-MERY------PEV-----LR-------ALLEGCRIHVQVKTGKRVI  117 (282)
Q Consensus        75 ~---------------g~~~---~A~~l~~~m~-~~p~------~~~-----~~-------~li~~~~~~g~~~~A~~~~  117 (282)
                      .               .+..   +|.+.|++.. --||      ...     -+       .+..-|.+.|.+.-|..-|
T Consensus       119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~  198 (243)
T PRK10866        119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV  198 (243)
T ss_pred             cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            1               1223   4445555432 2233      111     11       1233488999999999999


Q ss_pred             HHHHhcCCCC---hhHHHHHHHHHHHcCchhhhhcc
Q 043686          118 DQLCELKPLS---AENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus       118 ~~m~~~~p~~---~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +.+..--|++   ......|+.+|.+.|..++|...
T Consensus       199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~  234 (243)
T PRK10866        199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV  234 (243)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9999766644   34556888999999999988653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.30  E-value=0.042  Score=30.31  Aligned_cols=32  Identities=16%  Similarity=0.014  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      .+|..+...|...|++++|+..|++..+++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57888999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.28  E-value=1.8  Score=37.80  Aligned_cols=180  Identities=11%  Similarity=0.012  Sum_probs=121.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH----HH------------HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP----LT------------FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTH   64 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~----~t------------y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~   64 (282)
                      .+.+.|.+++|..=|+.... ..  |+.    ..            ....+..+.-.|+...|.+...  ..+.| |...
T Consensus       115 vllK~Gele~A~~DF~~vl~-~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l  191 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQ-HE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL  191 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHh-cC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence            46789999999999999876 32  321    11            1223445566788888888777  66677 7788


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH---H------
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI---M------  133 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~---~------  133 (282)
                      |-.--++|...|++..|..=++... . .-|..+..-+-.-+.+.|+.+.++...++-.+++|++-..|.   .      
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence            8889999999999999988776644 2 445677777778899999999999999999999998744433   1      


Q ss_pred             -HHHH--HHHcCchhhhhc----ccceeee-----cCeEEEEecCCCCCCChHHHHHHHHHHHHH
Q 043686          134 -LSNW--YAAEAKWDVVNQ----AYSWIEF-----RNKVHVFGTGDVSCPRSEGIFWELQSLMKK  186 (282)
Q Consensus       134 -Li~~--y~~~g~~~~A~~----~~~~~~~-----~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~  186 (282)
                       |.++  -.+.++|-++.+    +...-|.     .+....+..++..-+++.+|+..-.++++-
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~  336 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI  336 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence             2111  223334433333    2221111     122245667788889999998666666653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.23  E-value=0.22  Score=36.78  Aligned_cols=80  Identities=16%  Similarity=0.002  Sum_probs=39.7

Q ss_pred             HhcCCCHHHHHHHhh----ccCCCC--hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCC
Q 043686           41 CSTAGMVEEGWLCFN----RIRSPK--VTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQ  109 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~  109 (282)
                      +-..|+.++|..+|+    .|+.+.  ...+-.+-..|...|+.++|..+|++.. -.|+    ......+--++...|+
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr   90 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR   90 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence            334566666666666    444433  2233345555666666666666665532 1132    1111222234555566


Q ss_pred             hhHHHHHHHHH
Q 043686          110 VKTGKRVIDQL  120 (282)
Q Consensus       110 ~~~A~~~~~~m  120 (282)
                      .++|.+.+-..
T Consensus        91 ~~eAl~~~l~~  101 (120)
T PF12688_consen   91 PKEALEWLLEA  101 (120)
T ss_pred             HHHHHHHHHHH
Confidence            66666665443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.19  E-value=0.36  Score=45.99  Aligned_cols=122  Identities=16%  Similarity=0.100  Sum_probs=96.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .+.+.+..++|...+.+...   +.|-.+ .|.-.-..+-..|..++|.+.|.  .-+.|| +.+-+++-.++-+.|+-.
T Consensus       659 ~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~  735 (799)
T KOG4162|consen  659 LFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR  735 (799)
T ss_pred             HHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence            45667778888877777654   445443 34333345667899999999999  778886 778999999999999888


Q ss_pred             HHHH--HHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686           80 EARI--FIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA  128 (282)
Q Consensus        80 ~A~~--l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~  128 (282)
                      -|.+  ++.++. +.|+ ...|-.|-..+-+.|+.++|.+.|.-..++++.+|
T Consensus       736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            7777  888765 7775 78999999999999999999999999987765443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.19  E-value=0.046  Score=36.70  Aligned_cols=56  Identities=14%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--------cc-CCCC-hhHHHHHHHHHHccCChHHHHHHHHh
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--------RI-RSPK-VTHHALMVSVLARAGLFDEARIFIQE   87 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--------~g-~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~   87 (282)
                      .+|+.+-..+...|++++|...|+        .| -.|+ ..+++.|...|.+.|+.++|++.+++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            467778888889999999999998        22 1233 56788999999999999999999876

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.16  E-value=0.95  Score=38.76  Aligned_cols=249  Identities=11%  Similarity=0.047  Sum_probs=120.7

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHH-HHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHA-LMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~~~g~~~   79 (282)
                      -+.+..++++|++++..-.+   -.| +....+.|-..|-...++..|-+.++  .-..|-..-|. ---..+-+++.+.
T Consensus        19 ~lI~d~ry~DaI~~l~s~~E---r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A   95 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELE---RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA   95 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence            34677788888888877655   235 55566666667777888888888887  44455544443 2234455666677


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec
Q 043686           80 EARIFIQEYHMERYPEVLRALLEG--CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR  157 (282)
Q Consensus        80 ~A~~l~~~m~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~  157 (282)
                      +|.++...|.-.|+...-..-+.+  ....+++-.+..+.++..+-  ++..+-+......-+.|+.+.|.+.|..-..-
T Consensus        96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqv  173 (459)
T KOG4340|consen   96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQV  173 (459)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhh
Confidence            777776666522332222222221  22334444444443333210  11122222333333444444444433221111


Q ss_pred             CeEEE-----EecCCCCCCChHHHHHHHHHHHHHHHhCCCc--cCC--Ccccccchhhhhhhhhh-hhHHHHHHhhhccC
Q 043686          158 NKVHV-----FGTGDVSCPRSEGIFWELQSLMKKMEGDSLR--PKP--DFSLHYVDEERKWTQIG-HSEILALSFGLIST  227 (282)
Q Consensus       158 ~~~~~-----~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~--pd~--~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~  227 (282)
                      +-.+.     +-.+.-+.++...|+    ++..++.++|++  |.-  ....-.++.-.-..-+. |.--+..++.+.- 
T Consensus       174 sGyqpllAYniALaHy~~~qyasAL----k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa-  248 (459)
T KOG4340|consen  174 SGYQPLLAYNLALAHYSSRQYASAL----KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA-  248 (459)
T ss_pred             cCCCchhHHHHHHHHHhhhhHHHHH----HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh-
Confidence            11100     001112233444455    666666666664  221  11111111111111111 2222333333221 


Q ss_pred             CCCCeEEEeeccccccchHHHHHHHHHhhcceEEeecCCccccc
Q 043686          228 QVGATIHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHF  271 (282)
Q Consensus       228 ~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~  271 (282)
                               .-+-+-|+.+.|.+.+..|+-|.-..-|+.+.|.+
T Consensus       249 ---------AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~  283 (459)
T KOG4340|consen  249 ---------AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ  283 (459)
T ss_pred             ---------hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence                     11335688899999999999997777788887754

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.13  E-value=0.36  Score=43.51  Aligned_cols=132  Identities=17%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             hcCChHHHHHHHHHhHHhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHH-HHHHHHHHccCChHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSS-IEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHH-ALMVSVLARAGLFDEAR   82 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g-~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~-~~li~~~~~~g~~~~A~   82 (282)
                      +..-++.|..+|-+.++ .| +.|++..|+++|.-++. |+...|..+|+  ...-||...| +-.++.+.+.++-+.|.
T Consensus       409 r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nar  486 (660)
T COG5107         409 RKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENAR  486 (660)
T ss_pred             HHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHH
Confidence            44445677778888777 77 66777777777775553 66677788887  2233554444 35666777777888888


Q ss_pred             HHHHhcC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           83 IFIQEYH--MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        83 ~l~~~m~--~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      .+|+.-.  +..+  ..+|-.+|+-=.+-|++..|..+-+.|.++-|.. .+-..+.+.|+-.
T Consensus       487 aLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe-n~~evF~Sry~ik  548 (660)
T COG5107         487 ALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE-NLIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH-hHHHHHHHHHhhh
Confidence            8887532  3333  5677888877777788888877777777777733 4555555555543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.77  Score=42.66  Aligned_cols=114  Identities=10%  Similarity=-0.019  Sum_probs=81.8

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCChhHHHH--HHHHHH--ccC
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKVTHHAL--MVSVLA--RAG   76 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~~~~~~--li~~~~--~~g   76 (282)
                      ++-+.+.|++++|...-.++.. .+ +-|...+..=+-+..+.+.+++|..+.+ .+.   ..+++.  +=.+||  +.+
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~-~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILS-IV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHh-cC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcc
Confidence            4557789999999999999987 44 3334466666667888999999998887 221   122332  466776  679


Q ss_pred             ChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           77 LFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ..|+|...++... +-|..+-.-=-.-+.+.|++++|..+|+...
T Consensus        94 k~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~  137 (652)
T KOG2376|consen   94 KLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLA  137 (652)
T ss_pred             cHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999998554 2233344444455889999999999999883

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.99  E-value=1.1  Score=33.68  Aligned_cols=123  Identities=7%  Similarity=-0.007  Sum_probs=77.0

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      |..+.+.+.......+++.+.. .+. .+....|.++..|++.. ..+..+.+..  .++.....-.+..+-+.+.++++
T Consensus        14 v~~~~~~~~~~~l~~yLe~~~~-~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~   88 (140)
T smart00299       14 VELFEKRNLLEELIPYLESALK-LNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA   88 (140)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHc-cCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence            5566667788888888888776 553 56667888888887654 3344444441  13334444567777777777777


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           82 RIFIQEYHMERYPEVLRALLEGCRIH-VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        82 ~~l~~~m~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      .-++.++.      -|.-.++.+... ++++.|.+.+++     +.++..|..++..+..
T Consensus        89 ~~l~~k~~------~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~  137 (140)
T smart00299       89 VELYKKDG------NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD  137 (140)
T ss_pred             HHHHHhhc------CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence            77777776      222233333344 677777777664     2344678777776643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.79  E-value=0.86  Score=45.61  Aligned_cols=146  Identities=11%  Similarity=-0.019  Sum_probs=97.9

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCH----HHHHHHHHHHhcCCCHHHHHHHhh------ccC-CCC--hhHHHHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDP----LTFAAVLHACSTAGMVEEGWLCFN------RIR-SPK--VTHHALMVSV   71 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~----~ty~~ll~a~~~~g~~~~a~~l~~------~g~-~p~--~~~~~~li~~   71 (282)
                      +...|++++|...+++... .--..+.    ...+.+-..+...|++++|...+.      ... .+.  ..++..+...
T Consensus       462 ~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        462 AINDGDPEEAERLAELALA-ELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            4578999999999998765 3111121    234455556778999999999988      111 111  3355566777


Q ss_pred             HHccCChHHHHHHHHhcC-----C-C---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCC-ChhHHHHHHH
Q 043686           72 LARAGLFDEARIFIQEYH-----M-E---R-YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL----KPL-SAENYIMLSN  136 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~-----~-~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~p~-~~~~~~~Li~  136 (282)
                      +...|++++|...+++..     . .   | ...++..+...+...|++++|...+.+....    .|. ....+..+..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            888999999999987742     1 1   1 2334555666677789999999999988642    221 2344555677


Q ss_pred             HHHHcCchhhhhccc
Q 043686          137 WYAAEAKWDVVNQAY  151 (282)
Q Consensus       137 ~y~~~g~~~~A~~~~  151 (282)
                      .+...|+.++|...+
T Consensus       621 ~~~~~G~~~~A~~~l  635 (903)
T PRK04841        621 ISLARGDLDNARRYL  635 (903)
T ss_pred             HHHHcCCHHHHHHHH
Confidence            888899999887733

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.74  E-value=2.1  Score=35.76  Aligned_cols=138  Identities=15%  Similarity=0.138  Sum_probs=100.8

Q ss_pred             cCChHHHHHHHHHhHHh--CC-CCCCHHH-HHHHHHHHhcCCCHHHHHHHhh---ccCCCChh----HHHHHHHHHHccC
Q 043686            8 HGQRELGLSLFSELEKK--SS-IEIDPLT-FAAVLHACSTAGMVEEGWLCFN---RIRSPKVT----HHALMVSVLARAG   76 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~--~g-~~p~~~t-y~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~----~~~~li~~~~~~g   76 (282)
                      ..+.++.++++.+|...  .| ..|+..+ |--++-|....|+.+.|...++   ..+ |...    .+..++.   -.|
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lE---a~~  100 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLE---ATG  100 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHH---Hhh
Confidence            46788888888887644  45 6677653 4555667777788888888887   334 4322    2223333   357


Q ss_pred             ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.++|.++++..- -.| |.++|--=+...-..|+--+|.+-+.+-.+.-|.|...|.-|...|...|++++|.-
T Consensus       101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f  175 (289)
T KOG3060|consen  101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF  175 (289)
T ss_pred             chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence            8999999998864 345 578887777777777777788888888777778888999999999999999999876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.67  E-value=0.3  Score=37.10  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=73.2

Q ss_pred             HHccCChHHHHHHHHhcC----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCchh
Q 043686           72 LARAGLFDEARIFIQEYH----MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAEAKWD  145 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~g~~~  145 (282)
                      .-+.|++++|.+.|+.+.    ..| ..-+-=.|+.+|.+.+++++|...+++..+++|.++ +-|...+.+++.-...+
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~   99 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE   99 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence            345789999999999875    222 244566689999999999999999999999999765 45777777766655433


Q ss_pred             hhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccC
Q 043686          146 VVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPK  195 (282)
Q Consensus       146 ~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd  195 (282)
                      .+...+-            ..-...+...+|...++.|.++-.++-..||
T Consensus       100 ~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen  100 GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            3222111            1122334456677555566655544444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.65  E-value=0.25  Score=41.98  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc-C--ChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIH-V--QVKTGKRVIDQLCELKPLSAENYIMLS  135 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~-g--~~~~A~~~~~~m~~~~p~~~~~~~~Li  135 (282)
                      |...|--|-..|.+.|++++|..-|.+.. +.| |...+..+-.++... |  .-.+|..+|+++.+.+|.++.+-..|-
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA  234 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA  234 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            67889999999999999999999998854 444 477777777764333 2  345799999999999999988888898


Q ss_pred             HHHHHcCchhhhhcccce
Q 043686          136 NWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~~~  153 (282)
                      -.+...|++.+|...+..
T Consensus       235 ~~afe~g~~~~A~~~Wq~  252 (287)
T COG4235         235 FAAFEQGDYAEAAAAWQM  252 (287)
T ss_pred             HHHHHcccHHHHHHHHHH
Confidence            999999998888664444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.55  E-value=0.12  Score=28.18  Aligned_cols=33  Identities=15%  Similarity=0.062  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      ..|..+-..|.+.|++++|.+.|++...+.|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            357778888999999999999999999998854

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.51  E-value=1.4  Score=37.79  Aligned_cols=145  Identities=16%  Similarity=0.139  Sum_probs=99.2

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccC-------------CCC-------
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIR-------------SPK-------   61 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~-------------~p~-------   61 (282)
                      .+.|+++.|++=|....+-.|..|- ..||.-+.-|. .|+.+.|.....    +|+             -||       
T Consensus       155 ykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt  232 (459)
T KOG4340|consen  155 YKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT  232 (459)
T ss_pred             eccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence            5789999999999987663677775 56887775554 466777776654    111             112       


Q ss_pred             -hhHHHHHHHH-------HHccCChHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh
Q 043686           62 -VTHHALMVSV-------LARAGLFDEARIFIQEYH----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE  129 (282)
Q Consensus        62 -~~~~~~li~~-------~~~~g~~~~A~~l~~~m~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~  129 (282)
                       ...-++++.+       +.+.|+++.|.+-+-.||    .+.|.+|...+.-.-. .+++-+..+-+.-..++.|--..
T Consensus       233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~E  311 (459)
T KOG4340|consen  233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPE  311 (459)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChH
Confidence             1234455555       467899999999999998    3456677655433322 34555566666666688886679


Q ss_pred             HHHHHHHHHHHcCchhhhhcccce
Q 043686          130 NYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       130 ~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ||..|+-.|||..-++-|-.+...
T Consensus       312 TFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  312 TFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHHHhhhHHHhHHHHHHhh
Confidence            999999999999999988775544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.29  E-value=0.0052  Score=46.79  Aligned_cols=128  Identities=13%  Similarity=0.091  Sum_probs=75.7

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHH
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      +|+.|-+.+.++.....++.+.. .+-.-+....+.++..|++.+..++..++++   ..+..-...++..+-+.|.+++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~~~yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TSNNYDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SSSSS-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcc---cccccCHHHHHHHHHhcchHHH
Confidence            46677778888888888888887 6656667788888888888887778888777   1111222346666666677777


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      |.-++.++. .     |...+..+.+.++++.|.+.+.+.     +++..|..+++.|...+.
T Consensus        89 a~~Ly~~~~-~-----~~~al~i~~~~~~~~~a~e~~~~~-----~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen   89 AVYLYSKLG-N-----HDEALEILHKLKDYEEAIEYAKKV-----DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             HHHHHHCCT-T-----HTTCSSTSSSTHCSCCCTTTGGGC-----SSSHHHHHHHHHHCTSTC
T ss_pred             HHHHHHHcc-c-----HHHHHHHHHHHccHHHHHHHHHhc-----CcHHHHHHHHHHHHhcCc
Confidence            777666654 1     000111122334444444332211     234677777777655443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=94.09  E-value=1.3  Score=38.68  Aligned_cols=141  Identities=17%  Similarity=0.146  Sum_probs=101.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH---HHhcCCCHHHHHHHhh--ccCCCChhHH-HHHHHHHHccCC
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH---ACSTAGMVEEGWLCFN--RIRSPKVTHH-ALMVSVLARAGL   77 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~---a~~~~g~~~~a~~l~~--~g~~p~~~~~-~~li~~~~~~g~   77 (282)
                      .+.-.|++.+|+.-|....+     -|+..|-++..   .|...|+..-|..=+.  ..++||-..- ----..+-|.|.
T Consensus        47 ~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence            35567889999999998776     45556666554   4556666666666565  5677763211 122345678999


Q ss_pred             hHHHHHHHHhcC-CCCCH----HH------------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           78 FDEARIFIQEYH-MERYP----EV------------LRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~~----~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      ++.|..=|+... ..|+.    ..            .-..+..+...|+...|.+....+.++.|=++..|..=.++|..
T Consensus       122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~  201 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA  201 (504)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence            999999998853 44531    11            22345567778999999999999999999888888888999999


Q ss_pred             cCchhhhhc
Q 043686          141 EAKWDVVNQ  149 (282)
Q Consensus       141 ~g~~~~A~~  149 (282)
                      .|.+.+|+.
T Consensus       202 ~~e~k~AI~  210 (504)
T KOG0624|consen  202 EGEPKKAIH  210 (504)
T ss_pred             cCcHHHHHH
Confidence            999999987

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.99  E-value=1.4  Score=37.08  Aligned_cols=117  Identities=13%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---------ccCCCChhHHHHHHHHHHccCChH
Q 043686            9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---------RIRSPKVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---------~g~~p~~~~~~~li~~~~~~g~~~   79 (282)
                      |.+.-...++++..+ ..-+-++.-.+.|...-.+.|+.+.|...|+         .++.-+..+.-..-..|.-+.++.
T Consensus       191 kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             hhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            344445555555555 4444455555556666666677777776666         233333223333334445556666


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      .|.+.|++.+ ..| |.+.-|+=.-+..-.|+...|.+..+.|.+..|.
T Consensus       270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            6777776655 222 2333333333333346667777777777766663

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.68  E-value=0.71  Score=41.68  Aligned_cols=118  Identities=10%  Similarity=-0.021  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHhh----cc-CCCChhHHHHHHHHHHccCChHHHHHHHHh-cCCCCCHHHH-HHHHHH
Q 043686           31 PLTFAAVLHACSTAGMVEEGWLCFN----RI-RSPKVTHHALMVSVLARAGLFDEARIFIQE-YHMERYPEVL-RALLEG  103 (282)
Q Consensus        31 ~~ty~~ll~a~~~~g~~~~a~~l~~----~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~p~~~~~-~~li~~  103 (282)
                      ...|...|++--+..-++.|+.+|.    .| +.+++.+++++|.-|| .|+...|.++|+- |..-||+..| +--+.-
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f  475 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF  475 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            3567888888888888999999998    55 6778999999999888 5788899999985 6656776555 556777


Q ss_pred             HHhcCChhHHHHHHHHHH-hcCCC-ChhHHHHHHHHHHHcCchhhhhc
Q 043686          104 CRIHVQVKTGKRVIDQLC-ELKPL-SAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       104 ~~~~g~~~~A~~~~~~m~-~~~p~-~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.+.++-+.|..+|+... ++..+ -...|-.+|+.=.+.|++..|..
T Consensus       476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s  523 (660)
T COG5107         476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS  523 (660)
T ss_pred             HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence            888899999999999665 22211 12688888888888888766654

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.58  E-value=0.59  Score=46.22  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      =.+.|.+.+|++-|-+.       -|+..|.-+++++.+.|.+++-...+.    ..-+|  .+=+.||-+|+|.+++.+
T Consensus      1114 QL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred             HHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHH
Confidence            34668888888877664       345689999999999999998888887    33444  445689999999999888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686           81 ARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVID  118 (282)
Q Consensus        81 A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  118 (282)
                      -++++.    .||+.---.+-+-|...|.++.|.-+|.
T Consensus      1185 lE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1185 LEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred             HHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence            777642    4555544555555555555555555554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.51  E-value=3.7  Score=36.61  Aligned_cols=139  Identities=12%  Similarity=0.094  Sum_probs=84.3

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHH--HHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh-hHHHHHHHHHHccCChHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPL--TFAAVLHACSTAGMVEEGWLCFN--RIRSPKV-THHALMVSVLARAGLFDEA   81 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~--ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~-~~~~~li~~~~~~g~~~~A   81 (282)
                      -.|++++|.+-|+.|.. .   |...  -...|.-.--+.|.-+-|++.-+  .+..|.. -.+.+.+...|..|+++.|
T Consensus       132 ~eG~~~~Ar~kfeAMl~-d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A  207 (531)
T COG3898         132 LEGDYEDARKKFEAMLD-D---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA  207 (531)
T ss_pred             hcCchHHHHHHHHHHhc-C---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence            46889999999999976 1   3221  23334444456788887877777  7777763 4677899999999999999


Q ss_pred             HHHHHhcC----CCCCHH--HHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           82 RIFIQEYH----MERYPE--VLRALLEGCRIH---VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        82 ~~l~~~m~----~~p~~~--~~~~li~~~~~~---g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +++++.-.    +.||+.  .-..|+.+-...   -+...|...-.+..++.|+-+..-..-..+|.+.|++-++-.
T Consensus       208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence            99988743    556632  233344332111   223344444444445555444444444555566665555544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.2  Score=45.71  Aligned_cols=85  Identities=13%  Similarity=-0.001  Sum_probs=73.7

Q ss_pred             HHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686           69 VSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~  146 (282)
                      -++.+..|++++|..+|-+..  -++|-+-|+.=..+|.+.|++++|++=-.+-++++|+-+.-|+-+-.+..-.|++++
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence            356678999999999998743  355788999999999999999999998888889999999999999999999999999


Q ss_pred             hhcccce
Q 043686          147 VNQAYSW  153 (282)
Q Consensus       147 A~~~~~~  153 (282)
                      |...++.
T Consensus        89 A~~ay~~   95 (539)
T KOG0548|consen   89 AILAYSE   95 (539)
T ss_pred             HHHHHHH
Confidence            9885443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.41  E-value=0.56  Score=43.16  Aligned_cols=98  Identities=13%  Similarity=0.013  Sum_probs=61.3

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC---CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH---MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY  131 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~  131 (282)
                      ..+.|+ .+|...++.-.|..-+..|..+|.+..   ..+ .+.++++++.-||.. +.+-|.++|+-=..-.|+++..-
T Consensus       361 ~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~d~p~yv  438 (656)
T KOG1914|consen  361 EDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFGDSPEYV  438 (656)
T ss_pred             hccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCChHHH
Confidence            334443 367777777777777777777777754   233 577777777777654 56677777776554455554555


Q ss_pred             HHHHHHHHHcCchhhhhcccceee
Q 043686          132 IMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus       132 ~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                      ..-++.+...++=..|..+|+...
T Consensus       439 ~~YldfL~~lNdd~N~R~LFEr~l  462 (656)
T KOG1914|consen  439 LKYLDFLSHLNDDNNARALFERVL  462 (656)
T ss_pred             HHHHHHHHHhCcchhHHHHHHHHH
Confidence            556666666666555555555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.40  E-value=3.1  Score=32.63  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=76.7

Q ss_pred             HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccC--ChHHHHHHHHhcCCCC
Q 043686           15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAG--LFDEARIFIQEYHMER   92 (282)
Q Consensus        15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~p   92 (282)
                      .+..+.+.+ .++.|+...|.-+++.+.+.|.+..-..+...++-||.......+-.+....  -..-|.+.+.++.   
T Consensus        14 lEYirSl~~-~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---   89 (167)
T PF07035_consen   14 LEYIRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---   89 (167)
T ss_pred             HHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh---
Confidence            455666677 8999999999999999999999999999999777787766666665544321  1334555555554   


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           93 YPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                        ..+..++..+-..|++-+|.++.+...
T Consensus        90 --~~~~~iievLL~~g~vl~ALr~ar~~~  116 (167)
T PF07035_consen   90 --TAYEEIIEVLLSKGQVLEALRYARQYH  116 (167)
T ss_pred             --hhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence              356778889999999999999998764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.19  E-value=2.8  Score=39.18  Aligned_cols=137  Identities=10%  Similarity=0.044  Sum_probs=93.8

Q ss_pred             ChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh----------ccCCCChhHHHHHHHHHHccCCh
Q 043686           10 QRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN----------RIRSPKVTHHALMVSVLARAGLF   78 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~----------~g~~p~~~~~~~li~~~~~~g~~   78 (282)
                      ....|.+++...-+  +.+-+ .+.--..+.-....|+++.|.+++.          ..+.-..-+-++++..|-+.++-
T Consensus       356 ~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~  433 (652)
T KOG2376|consen  356 KHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDN  433 (652)
T ss_pred             HHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCC
Confidence            45566677666543  22222 2344455556677899999998887          12222235667788889999888


Q ss_pred             HHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           79 DEARIFIQEYH--------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        79 ~~A~~l~~~m~--------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.|..++++..        ..+. ..+|.-+..-=-++|+-++|..+++++.+..|+++.+..-++.+|++. +.++|+.
T Consensus       434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~  512 (652)
T KOG2376|consen  434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAES  512 (652)
T ss_pred             ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHH
Confidence            88888887632        2222 233333444456779999999999999999998999999999999887 4555555

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.12  E-value=4.2  Score=38.55  Aligned_cols=130  Identities=8%  Similarity=0.027  Sum_probs=71.9

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----------ccCCCChhHHHHHHHHHHccC
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN----------RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----------~g~~p~~~~~~~li~~~~~~g   76 (282)
                      .+|-++-++.+|++-.+   +.|..  -.-.|.-+++.++.++|.+.+.          ...+.+-..|.-+-+..++.-
T Consensus       150 ~~~lPets~rvyrRYLk---~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p  224 (835)
T KOG2047|consen  150 SHGLPETSIRVYRRYLK---VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP  224 (835)
T ss_pred             hCCChHHHHHHHHHHHh---cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc
Confidence            34555566666666554   33332  4555666666666666666665          112223344444444444332


Q ss_pred             ---ChHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           77 ---LFDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        77 ---~~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                         .--...++++.+. .-||  -..|++|..-|.+.|++|+|..+|++.....- .+.-|+.+.+.|+...
T Consensus       225 ~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~-tvrDFt~ifd~Ya~FE  295 (835)
T KOG2047|consen  225 DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM-TVRDFTQIFDAYAQFE  295 (835)
T ss_pred             chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe-ehhhHHHHHHHHHHHH
Confidence               2223444555543 3455  34688888888888888888888887663221 2244555566665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.08  E-value=0.31  Score=47.07  Aligned_cols=136  Identities=9%  Similarity=0.018  Sum_probs=74.6

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      .-|.+++|+.+|++-++          |.-|=+-|...|++++|.++-+  -.+.. ..||-.--.-+-..++++.|++.
T Consensus       812 eLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL-r~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL-RNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh-hhhHHHHHHHHHhhccHHHHHHH
Confidence            45777777777777665          3333345666778888887777  11111 12444444444445666666666


Q ss_pred             HHhcC----------------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh------c-------------
Q 043686           85 IQEYH----------------------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE------L-------------  123 (282)
Q Consensus        85 ~~~m~----------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~-------------  123 (282)
                      |++-.                      -..|...|.-.-.-.-..|++|.|+.+|+..+.      +             
T Consensus       881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i  960 (1416)
T KOG3617|consen  881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI  960 (1416)
T ss_pred             HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence            65532                      011222233333334455777777777776541      0             


Q ss_pred             --CCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          124 --KPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       124 --~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                        +..|....--|.++|-+.|++-+|...|..
T Consensus       961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  961 AEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence              011223344567777777777777775544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=1.4  Score=39.10  Aligned_cols=81  Identities=9%  Similarity=-0.011  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      .++..|.-+|-|.+++..|.+.-++.- + .+|+-..--=-.+|...|+++.|...|+++++++|.|-..-+-|+.+--+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            467788888999999999999887743 3 45576766677889999999999999999999999996666667666555


Q ss_pred             cCc
Q 043686          141 EAK  143 (282)
Q Consensus       141 ~g~  143 (282)
                      ..+
T Consensus       338 ~~~  340 (397)
T KOG0543|consen  338 IRE  340 (397)
T ss_pred             HHH
Confidence            544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.01  E-value=0.49  Score=45.78  Aligned_cols=162  Identities=9%  Similarity=-0.013  Sum_probs=87.5

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-----------------------ccCCCC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-----------------------RIRSPK   61 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-----------------------~g~~p~   61 (282)
                      |-..|++++|+++-+.-.+ -.++-   ||-.--.-+-..++.+.|.+.|+                       ..-..|
T Consensus       836 yQs~g~w~eA~eiAE~~DR-iHLr~---Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d  911 (1416)
T KOG3617|consen  836 YQSQGMWSEAFEIAETKDR-IHLRN---TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD  911 (1416)
T ss_pred             HHhcccHHHHHHHHhhccc-eehhh---hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence            5567888888887766443 33333   34333344444567777777777                       111223


Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC----------C-------------CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH----------M-------------ERYPEVLRALLEGCRIHVQVKTGKRVID  118 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~----------~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~  118 (282)
                      ...|.....-+-..|++|.|+.++...+          +             .-|......|-.-|-+.|++.+|...|.
T Consensus       912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3444445555556788888777776643          0             1234444556666666677777776666


Q ss_pred             HHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc------------eeeecC-eEEEEecCCCCCCChHHHHH
Q 043686          119 QLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS------------WIEFRN-KVHVFGTGDVSCPRSEGIFW  178 (282)
Q Consensus       119 ~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~------------~~~~~~-~~~~~i~~~~~~~~~~~a~~  178 (282)
                      +.        .++...|+.+-..+.-|+-..+..            ..+..+ ..+.-+.-|-+.|.+.+|++
T Consensus       992 rA--------qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen  992 RA--------QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred             HH--------HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHH
Confidence            55        355556665544444333332111            111112 22333444677777777763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.88  E-value=0.21  Score=27.32  Aligned_cols=32  Identities=16%  Similarity=0.042  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      .+|..+-..|.+.|++++|.+.|++..++.|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            36777788888999999999999988888773

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=92.66  E-value=0.89  Score=44.86  Aligned_cols=135  Identities=13%  Similarity=0.039  Sum_probs=89.5

Q ss_pred             ChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHH--HHHHHHccCChHHHHH
Q 043686           10 QRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHAL--MVSVLARAGLFDEARI   83 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~--li~~~~~~g~~~~A~~   83 (282)
                      +..+|.+.|+..-+   +.|+ ........+.|++....+.|.++.-  ....| -...+|.  .--.|-+.++..+|..
T Consensus       507 Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~  583 (1238)
T KOG1127|consen  507 DMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVC  583 (1238)
T ss_pred             HHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHH
Confidence            55677888887655   4443 3466778888999999998888854  11111 1222232  3334667888888888


Q ss_pred             HHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH--HHHHHHHcCchhhhhc
Q 043686           84 FIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM--LSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        84 l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~--Li~~y~~~g~~~~A~~  149 (282)
                      -|+..- ..| |...|-.|..+|...|++..|.++|.+...++|.+  +|.-  ..-+-|-.|...+|..
T Consensus       584 ~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s--~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  584 EFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS--KYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh--HHHHHHHHHHHHHhhhHHHHHH
Confidence            887743 556 58889999999999999999999999988888854  3331  2223344455555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.41  E-value=0.3  Score=27.42  Aligned_cols=27  Identities=15%  Similarity=0.010  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      +|+.|-..|.+.|++++|.++|++...
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            577888889999999999999988653

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=92.30  E-value=0.64  Score=39.79  Aligned_cols=131  Identities=12%  Similarity=0.143  Sum_probs=72.6

Q ss_pred             hcCChHHHHHHHHHhHHh---CCCCCCH--HHHHHHHHHHhcC-CCHHHHHHHhh--------ccCCCC--hhHHHHHHH
Q 043686            7 LHGQRELGLSLFSELEKK---SSIEIDP--LTFAAVLHACSTA-GMVEEGWLCFN--------RIRSPK--VTHHALMVS   70 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~---~g~~p~~--~ty~~ll~a~~~~-g~~~~a~~l~~--------~g~~p~--~~~~~~li~   70 (282)
                      +.+++++|++.|.+..+-   .|- |+.  ..+..+-..|-+. |++++|.+.|.        .+ .|.  ..++.-+..
T Consensus        86 k~~~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~  163 (282)
T PF14938_consen   86 KKGDPDEAIECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD  163 (282)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence            444666666666664330   221 222  2455566667776 78888888777        23 222  345566777


Q ss_pred             HHHccCChHHHHHHHHhcC--------CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-----hHHHHHHH
Q 043686           71 VLARAGLFDEARIFIQEYH--------MERYPE-VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-----ENYIMLSN  136 (282)
Q Consensus        71 ~~~~~g~~~~A~~l~~~m~--------~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-----~~~~~Li~  136 (282)
                      .+.+.|++++|.++|++..        ..+++. .|-..+-++...|+...|.+.|++..+..|.-.     ..-..|+.
T Consensus       164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~  243 (282)
T PF14938_consen  164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE  243 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence            7888888888888887742        112222 222233355566788888888888877666321     22345666


Q ss_pred             HHH
Q 043686          137 WYA  139 (282)
Q Consensus       137 ~y~  139 (282)
                      +|-
T Consensus       244 A~~  246 (282)
T PF14938_consen  244 AYE  246 (282)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            663

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.28  E-value=3.2  Score=36.95  Aligned_cols=123  Identities=16%  Similarity=0.146  Sum_probs=79.8

Q ss_pred             hhhh---cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHh----c-----CCCHHHHHHHhh--ccCCCChhHHHHHH
Q 043686            4 GYSL---HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACS----T-----AGMVEEGWLCFN--RIRSPKVTHHALMV   69 (282)
Q Consensus         4 ~~~~---~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~----~-----~g~~~~a~~l~~--~g~~p~~~~~~~li   69 (282)
                      ++.+   .|+.++|++++..... ..-.+++.||..+-..|-    .     ...+++|.+.+.  ..+.||..+--.+.
T Consensus       188 ALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~A  266 (374)
T PF13281_consen  188 ALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAA  266 (374)
T ss_pred             HHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHH
Confidence            4555   8999999999999665 556677778877655432    2     234788888888  44556544433333


Q ss_pred             HHHHccCC-hHH---HHHHH---Hhc---C----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           70 SVLARAGL-FDE---ARIFI---QEY---H----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        70 ~~~~~~g~-~~~---A~~l~---~~m---~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      -.+--+|. ++.   ..++-   ...   +    -..|-.-+.++..++.-.|+.++|.+..++|..+.|+.
T Consensus       267 tLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  267 TLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            33333333 222   22222   111   1    13455677889999999999999999999999888754

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.21  E-value=3.6  Score=41.10  Aligned_cols=128  Identities=10%  Similarity=0.104  Sum_probs=92.8

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      ...++-+++|+.+|++..      .+....+.||.   +.+.++.|.+.-+.--.|  .+|+-+-.+--+.|.+.+|.+-
T Consensus      1058 ai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             HhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHH
Confidence            345677888888888754      34445555554   346677777776633334  5788888888888999999888


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           85 IQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCE--LKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        85 ~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      |=+..   |...|--+|....+.|.||+-.+.+...++  -+|   ..=+.||-+|++.+++.+-+.
T Consensus      1127 yikad---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~---~id~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1127 YIKAD---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP---YIDSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred             HHhcC---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc---cchHHHHHHHHHhchHHHHHH
Confidence            76654   455888899999999999988888776663  244   455678889999998888766

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=92.11  E-value=5.2  Score=32.05  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=82.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-------ccCCCChhHHHHHHHHHHcc
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-------RIRSPKVTHHALMVSVLARA   75 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p~~~~~~~li~~~~~~   75 (282)
                      .++...|+..||...|.+-.. --+.-|....-.+-++.-..+++..|...++       .+-.||.  --.+-..|.-.
T Consensus        97 ~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~  173 (251)
T COG4700          97 NALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQ  173 (251)
T ss_pred             HHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHhc
Confidence            567889999999999999875 4456677888888899999999999999998       3444443  33455678889


Q ss_pred             CChHHHHHHHHhcC-CCCCH--HH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           76 GLFDEARIFIQEYH-MERYP--EV-LRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        76 g~~~~A~~l~~~m~-~~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      |+.++|+.-|+... +.|+.  .+ |.-+   +.+.|+.++|..-+.+..
T Consensus       174 g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         174 GKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREANAQYVAVV  220 (251)
T ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHHHHHHHHH
Confidence            99999999999854 66763  33 4433   456666666555444443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=92.03  E-value=4.3  Score=40.67  Aligned_cols=144  Identities=10%  Similarity=0.030  Sum_probs=93.9

Q ss_pred             hhhcCChHHHHHHHHHhHHhC--CCCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--ccC---CCChhHH-----HHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKS--SIEID--PLTFAAVLHACSTAGMVEEGWLCFN--RIR---SPKVTHH-----ALMVS   70 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~--g~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~g~---~p~~~~~-----~~li~   70 (282)
                      +...|++++|...+.+... .  ...|.  ..++..+-......|+.++|.+.++  ..+   ......+     ...+.
T Consensus       583 ~~~~G~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  661 (903)
T PRK04841        583 LWEWARLDEAEQCARKGLE-VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI  661 (903)
T ss_pred             HHHhcCHHHHHHHHHHhHH-hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence            4456999999999988654 2  11122  2344445556778899999998887  111   1111111     11234


Q ss_pred             HHHccCChHHHHHHHHhcC-CC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCChhHHHHHHHHH
Q 043686           71 VLARAGLFDEARIFIQEYH-ME-RY----PEVLRALLEGCRIHVQVKTGKRVIDQLCEL------KPLSAENYIMLSNWY  138 (282)
Q Consensus        71 ~~~~~g~~~~A~~l~~~m~-~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~p~~~~~~~~Li~~y  138 (282)
                      .+...|+.+.|.+++.... .. ..    ...+..+..++...|+.++|...+.+....      .+....+...+..+|
T Consensus       662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~  741 (903)
T PRK04841        662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY  741 (903)
T ss_pred             HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            5566899999999987754 11 11    112455667789999999999999998732      122234667788889


Q ss_pred             HHcCchhhhhc
Q 043686          139 AAEAKWDVVNQ  149 (282)
Q Consensus       139 ~~~g~~~~A~~  149 (282)
                      .+.|+.++|..
T Consensus       742 ~~~G~~~~A~~  752 (903)
T PRK04841        742 WQQGRKSEAQR  752 (903)
T ss_pred             HHcCCHHHHHH
Confidence            99999998877

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=91.97  E-value=1.7  Score=41.49  Aligned_cols=123  Identities=10%  Similarity=0.023  Sum_probs=74.8

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccC-CCC----hhHHHHHHHHHHccCChHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-SPK----VTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~   82 (282)
                      -|++++|.++|-+|.+ ..+         -|....+.|+.-...++++.|- ..|    ...|+.+-+-++....+++|.
T Consensus       747 ~g~feeaek~yld~dr-rDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~  816 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADR-RDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA  816 (1189)
T ss_pred             hcchhHhhhhhhccch-hhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777777766 221         2344556677766666666221 111    345677777777777777777


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           83 IFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        83 ~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +.+..-.   |   -...+.+|.+..++++-+.+-+    .-|.+....--+.+++...|+-++|...
T Consensus       817 ~yY~~~~---~---~e~~~ecly~le~f~~LE~la~----~Lpe~s~llp~~a~mf~svGMC~qAV~a  874 (1189)
T KOG2041|consen  817 KYYSYCG---D---TENQIECLYRLELFGELEVLAR----TLPEDSELLPVMADMFTSVGMCDQAVEA  874 (1189)
T ss_pred             HHHHhcc---c---hHhHHHHHHHHHhhhhHHHHHH----hcCcccchHHHHHHHHHhhchHHHHHHH
Confidence            7776643   1   1124555555544444333322    2355656777888999999999988653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=91.89  E-value=1  Score=37.68  Aligned_cols=73  Identities=12%  Similarity=0.188  Sum_probs=53.5

Q ss_pred             HHHHHHHccCChHHHHHHHHhcC-CCCC-HHH---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHH
Q 043686           67 LMVSVLARAGLFDEARIFIQEYH-MERY-PEV---LRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYA  139 (282)
Q Consensus        67 ~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~  139 (282)
                      ....-+.+.|++++|.+.|++.. ..|+ ..+   .-.+..+|.+.+++++|...|++..+..|+++ .-|...+.+++
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence            34555567899999999999975 4554 222   23466788999999999999999999988764 34555555544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.67  E-value=1.6  Score=37.29  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCChhHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLC-------ELKPLSAENYIM  133 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~p~~~~~~~~  133 (282)
                      .++..++..+..+|+++.+.+.+++.- ..| |...|-.|+.+|.+.|+...|.+.|+.+.       ++.| .+.+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P-~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP-APELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc-cHHHHHH
Confidence            356678888899999999999999865 555 68899999999999999999999999987       3566 3356655


Q ss_pred             HHHH
Q 043686          134 LSNW  137 (282)
Q Consensus       134 Li~~  137 (282)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            5444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.62  E-value=2.3  Score=40.20  Aligned_cols=147  Identities=12%  Similarity=0.079  Sum_probs=94.8

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~   82 (282)
                      +.+.|++..-...|++-.....+.-....|.-.+.-.-..|.++-+.++++  ..+.|  ..-+--|.-+++.+++++|-
T Consensus       112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P--~~~eeyie~L~~~d~~~eaa  189 (835)
T KOG2047|consen  112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP--EAREEYIEYLAKSDRLDEAA  189 (835)
T ss_pred             HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH--HHHHHHHHHHHhccchHHHH
Confidence            345677777777777754413344444567777777777788888888888  44444  34667788888888888888


Q ss_pred             HHHHhcC---------CCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCchhhhhc
Q 043686           83 IFIQEYH---------MERYPEVLRALLEGCRIH---VQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        83 ~l~~~m~---------~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.+....         .+.+--.|+-+-.-..++   +.--....+++.+.+.-||.. ..|++|.+.|.+.|++++|..
T Consensus       190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD  269 (835)
T KOG2047|consen  190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD  269 (835)
T ss_pred             HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            8777643         122334455443333333   233334456666655555432 578999999999999999988


Q ss_pred             ccce
Q 043686          150 AYSW  153 (282)
Q Consensus       150 ~~~~  153 (282)
                      ++..
T Consensus       270 vyee  273 (835)
T KOG2047|consen  270 VYEE  273 (835)
T ss_pred             HHHH
Confidence            5443

>PRK11906 transcriptional regulator; Provisional

Probab=91.50  E-value=3.5  Score=37.56  Aligned_cols=140  Identities=13%  Similarity=0.096  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHhHHhCCCCCCHHH-HHH-----H---HHHHhc-CCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686           11 RELGLSLFSELEKKSSIEIDPLT-FAA-----V---LHACST-AGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL   77 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~~t-y~~-----l---l~a~~~-~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~   77 (282)
                      .+.|+.+|.+-.....+.|+-.. |..     +   +.++.. .....+|.++-+  ..+.| |......+-.++.-.|+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            35788899998731347776542 222     1   112222 344556666666  55666 46666677777777888


Q ss_pred             hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCchhhhhccc
Q 043686           78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA--ENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~--~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ++.|..+|++.. ..|| ..+|...--...-.|+.++|.+.+++..++.|.-.  ...-..+++|+.. .+|+|.+.+
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~  430 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY  430 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence            999999999865 6888 45555555556668999999999999888988532  2233455667654 355555533

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.40  E-value=1.9  Score=36.82  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      .++..++..+...|+.+.+.+.+++....+|-+...|..|+.+|.+.|+...|+..+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y  210 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY  210 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence            346667888889999999999999999999999999999999999999988875443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.39  E-value=3.4  Score=32.05  Aligned_cols=63  Identities=17%  Similarity=0.114  Sum_probs=37.4

Q ss_pred             hHHHHHHHHH---HccCChHHHHHHHHhcC-CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           63 THHALMVSVL---ARAGLFDEARIFIQEYH-MERYPEVLRAL-LEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        63 ~~~~~li~~~---~~~g~~~~A~~l~~~m~-~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      .+.+.||+.+   .+.++.++++.+++.+. .+|.....-.+ ..-+.+.|+|.+|.++|+++.+-.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~   75 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP   75 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            3445555444   35567777777777766 56653332221 1225677777777777777765555

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.30  E-value=3.6  Score=38.04  Aligned_cols=142  Identities=17%  Similarity=0.057  Sum_probs=79.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCH-----HHHHHHHHHHhc----CCCHHHHHHHhh--ccCCCChhHHHHH-HH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-----LTFAAVLHACST----AGMVEEGWLCFN--RIRSPKVTHHALM-VS   70 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-----~ty~~ll~a~~~----~g~~~~a~~l~~--~g~~p~~~~~~~l-i~   70 (282)
                      +...=.|+-+.+++++.+-.+..+++-..     .+|..++..++.    ....+.|.++++  ..--|+...|.-. -.
T Consensus       196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR  275 (468)
T PF10300_consen  196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGR  275 (468)
T ss_pred             hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33444677777887777755413333222     234455543332    456777777777  5555776666533 24


Q ss_pred             HHHccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH-HHHHHHcCc
Q 043686           71 VLARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML-SNWYAAEAK  143 (282)
Q Consensus        71 ~~~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L-i~~y~~~g~  143 (282)
                      .+...|++++|.+.|++..      -+-....+--+.-++.-..+|++|.+.|..+.+...-+..+|.-+ ...|...|+
T Consensus       276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~  355 (468)
T PF10300_consen  276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR  355 (468)
T ss_pred             HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc
Confidence            4556688888888887532      022233444455567777788888888888875443232334322 233444444


Q ss_pred             h
Q 043686          144 W  144 (282)
Q Consensus       144 ~  144 (282)
                      .
T Consensus       356 ~  356 (468)
T PF10300_consen  356 E  356 (468)
T ss_pred             c
Confidence            4

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=91.29  E-value=6.8  Score=31.66  Aligned_cols=144  Identities=15%  Similarity=0.012  Sum_probs=85.8

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh--hHHHHHHHHHHc----
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV--THHALMVSVLAR----   74 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~--~~~~~li~~~~~----   74 (282)
                      .+.+.|++++|++.|+++.....-.|-. ...-.+..++-+.|+.++|...++  ...-|+.  .-+.-.+.+.+.    
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~   93 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI   93 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence            3567899999999999998722222222 244556778899999999999999  2222321  122222222221    


Q ss_pred             ---------cCChHHHHHHHHhcC-CCCC------H-----HHHH-------HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           75 ---------AGLFDEARIFIQEYH-MERY------P-----EVLR-------ALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        75 ---------~g~~~~A~~l~~~m~-~~p~------~-----~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                               .+...+|...|+... --||      +     ...+       .+..-|.+.|.+..|..-++.+.+--|+
T Consensus        94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~  173 (203)
T PF13525_consen   94 PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD  173 (203)
T ss_dssp             HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT
T ss_pred             ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence                     123446666666643 1232      1     1111       1344588999999999999999988886


Q ss_pred             Ch---hHHHHHHHHHHHcCchhhh
Q 043686          127 SA---ENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus       127 ~~---~~~~~Li~~y~~~g~~~~A  147 (282)
                      +.   .....|+.+|-+.|..+.|
T Consensus       174 t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  174 TPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             SHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CchHHHHHHHHHHHHHHhCChHHH
Confidence            53   3345788889999887754

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=91.22  E-value=0.85  Score=38.75  Aligned_cols=36  Identities=11%  Similarity=0.157  Sum_probs=22.6

Q ss_pred             CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC
Q 043686            9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG   45 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g   45 (282)
                      ++++=-...++.|++ .|+..|..+|+.||+.+=+..
T Consensus        86 ~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk  121 (406)
T KOG3941|consen   86 THVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK  121 (406)
T ss_pred             chHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc
Confidence            444444555666766 777777777777776665543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.16  E-value=9  Score=32.87  Aligned_cols=134  Identities=12%  Similarity=0.041  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh------------------------------ccCCC
Q 043686           11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN------------------------------RIRSP   60 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~------------------------------~g~~p   60 (282)
                      ..+|++||.-+.. ..  --+++-+-++.++...-+..+|...+.                              .+..-
T Consensus       149 s~KA~ELFayLv~-hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~  225 (361)
T COG3947         149 SRKALELFAYLVE-HK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKY  225 (361)
T ss_pred             hhHHHHHHHHHHH-hc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccc
Confidence            3579999998877 22  234566677777777777777776665                              44555


Q ss_pred             ChhHHHHHHHHHHcc-CChHHHHHHHHhcC----------CCCC-----HHHHHH----HHHHHHhcCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARA-GLFDEARIFIQEYH----------MERY-----PEVLRA----LLEGCRIHVQVKTGKRVIDQL  120 (282)
Q Consensus        61 ~~~~~~~li~~~~~~-g~~~~A~~l~~~m~----------~~p~-----~~~~~~----li~~~~~~g~~~~A~~~~~~m  120 (282)
                      |+.-|-..+.-.-+. -.++++.++....+          ..-|     ..+|..    .-+.|..+|.+.+|.++.+..
T Consensus       226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~  305 (361)
T COG3947         226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA  305 (361)
T ss_pred             cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            777777777665544 34788888887763          1112     123444    445799999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686          121 CELKPLSAENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus       121 ~~~~p~~~~~~~~Li~~y~~~g~~~~A  147 (282)
                      ..++|-+...|-.|+..|...|+=-.|
T Consensus       306 ltldpL~e~~nk~lm~~la~~gD~is~  332 (361)
T COG3947         306 LTLDPLSEQDNKGLMASLATLGDEISA  332 (361)
T ss_pred             hhcChhhhHHHHHHHHHHHHhccchhh
Confidence            999998888888999999999984333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=91.08  E-value=0.8  Score=37.10  Aligned_cols=74  Identities=12%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             HHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHc
Q 043686           68 MVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAE  141 (282)
Q Consensus        68 li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~  141 (282)
                      ....+.+.|++++|.+.|+++. --|+    ..+.-.++.+|.+.|++++|...|++.....|.++ ..+...+.+.+..
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            3445667899999999999875 1222    45666788899999999999999999998888664 3344444444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=91.05  E-value=0.53  Score=40.28  Aligned_cols=119  Identities=13%  Similarity=0.040  Sum_probs=65.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC------CCCC--HHH
Q 043686           34 FAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH------MERY--PEV   96 (282)
Q Consensus        34 y~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~p~--~~~   96 (282)
                      |.-.-+.|-..|++++|.+.|.        .+-..+ ...|......|-+. ++++|.+.+++..      -.|+  ..+
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~  116 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3444445556666766666666        111111 23444445555444 6666666665532      1333  345


Q ss_pred             HHHHHHHHHhc-CChhHHHHHHHHHHhc---CCCC---hhHHHHHHHHHHHcCchhhhhcccce
Q 043686           97 LRALLEGCRIH-VQVKTGKRVIDQLCEL---KPLS---AENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        97 ~~~li~~~~~~-g~~~~A~~~~~~m~~~---~p~~---~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +..+-..|-+. |++++|.+.|++..++   ....   ...+.-+...+.+.|++++|...++.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            66667778787 8999999999988742   1110   23455677778888888877665544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.69  E-value=1.3  Score=37.04  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER----YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLS  135 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li  135 (282)
                      ...|+.-+.-+ +.|++++|.+.|+.+. -.|    ..-+--.++-++.+.++.++|...+++.....|.++ .-|..-|
T Consensus        35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            34555544443 5799999999999985 122    244556677789999999999999999998877543 5577777


Q ss_pred             HHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCccc
Q 043686          136 NWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSL  200 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~  200 (282)
                      .+.+..-.++...+                   ......+|+..+..+..+-..+...||+..-+
T Consensus       114 kgLs~~~~i~~~~r-------------------Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i  159 (254)
T COG4105         114 KGLSYFFQIDDVTR-------------------DQSAARAAFAAFKELVQRYPNSRYAPDAKARI  159 (254)
T ss_pred             HHHHHhccCCcccc-------------------CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            77774443333321                   12225677777778888888888888875543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.68  E-value=8.8  Score=34.35  Aligned_cols=144  Identities=16%  Similarity=0.114  Sum_probs=86.2

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHH--HHHHHHHHHhcC---CCHHHHHHHhh--ccCCCChhHHH-HHHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPL--TFAAVLHACSTA---GMVEEGWLCFN--RIRSPKVTHHA-LMVSVLA   73 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~--ty~~ll~a~~~~---g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~   73 (282)
                      +...|..|+++.|++|.+.-+...-+.||+.  .-..|+.+-+.+   .+...|+..-.  ..+.||.+--. .--.+|.
T Consensus       195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf  274 (531)
T COG3898         195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALF  274 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence            4567888999999999888665344667664  334455443221   23444444433  66777754333 3346788


Q ss_pred             ccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           74 RAGLFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC---ELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        74 ~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.|++-++-.+++.+- -.|-..+|.  +..+.+.|+  .++.=++...   .+.|++..+--++..+-...|++..|..
T Consensus       275 ~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa  350 (531)
T COG3898         275 RDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA  350 (531)
T ss_pred             hccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence            8899999988888763 233322221  222445554  3333344333   6788887777777777777777776654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.57  E-value=0.48  Score=26.57  Aligned_cols=24  Identities=8%  Similarity=0.194  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHh
Q 043686           64 HHALMVSVLARAGLFDEARIFIQE   87 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~   87 (282)
                      +|+.|-..|.+.|++++|.++|++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            478889999999999999999987

>PRK15331 chaperone protein SicA; Provisional

Probab=90.50  E-value=1.3  Score=34.47  Aligned_cols=81  Identities=10%  Similarity=-0.036  Sum_probs=51.0

Q ss_pred             hcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChhHHHHH
Q 043686           42 STAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHVQVKTGKRV  116 (282)
Q Consensus        42 ~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~~~~A~~~  116 (282)
                      -..|++++|..+|.  .-..|. ..-+..|-.++-..+++++|...|...- +. -|...+-..-.+|...|+.++|...
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence            35677777777777  334442 2334466666666777777777776632 12 2344455566777777888888887


Q ss_pred             HHHHHh
Q 043686          117 IDQLCE  122 (282)
Q Consensus       117 ~~~m~~  122 (282)
                      |+...+
T Consensus       128 f~~a~~  133 (165)
T PRK15331        128 FELVNE  133 (165)
T ss_pred             HHHHHh
Confidence            777665

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.33  E-value=0.71  Score=27.13  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALL  101 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li  101 (282)
                      ++..+-..|.+.|++++|+++|++.. ..|| ...|..|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            56778889999999999999999865 5665 66666543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=89.84  E-value=2.2  Score=36.36  Aligned_cols=101  Identities=14%  Similarity=0.073  Sum_probs=61.5

Q ss_pred             cCCCChhHHHHHHHHHHc-----cCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCC----------------hhH
Q 043686           57 IRSPKVTHHALMVSVLAR-----AGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQ----------------VKT  112 (282)
Q Consensus        57 g~~p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~----------------~~~  112 (282)
                      +-..|..+|-+.|.-+..     .++++=-...++.|.   +..|..+|+.||..+=|..-                -+-
T Consensus        62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C  141 (406)
T KOG3941|consen   62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC  141 (406)
T ss_pred             cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence            334455566666655532     244443333333333   66666777776666544332                235


Q ss_pred             HHHHHHHHH--hcCCCChhHHHHHHHHHHHcCc-hhhhhcccceeeecC
Q 043686          113 GKRVIDQLC--ELKPLSAENYIMLSNWYAAEAK-WDVVNQAYSWIEFRN  158 (282)
Q Consensus       113 A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~-~~~A~~~~~~~~~~~  158 (282)
                      +..++++|.  |+.|+. .+-..|++++++.+- ..+..+..-||+.-.
T Consensus       142 ~I~vLeqME~hGVmPdk-E~e~~lvn~FGr~~~p~~K~~Rm~yWmPkfk  189 (406)
T KOG3941|consen  142 AIKVLEQMEWHGVMPDK-EIEDILVNAFGRWNFPTKKVKRMLYWMPKFK  189 (406)
T ss_pred             HHHHHHHHHHcCCCCch-HHHHHHHHHhccccccHHHHHHHHHhhhhhc
Confidence            788999998  778955 888899999988875 344455566665533

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.78  E-value=0.63  Score=25.79  Aligned_cols=24  Identities=8%  Similarity=-0.086  Sum_probs=17.5

Q ss_pred             CCC-HHHHHHHHHHHHhcCChhHHH
Q 043686           91 ERY-PEVLRALLEGCRIHVQVKTGK  114 (282)
Q Consensus        91 ~p~-~~~~~~li~~~~~~g~~~~A~  114 (282)
                      .|+ ..+|+.|-..|.+.|++++|.
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            554 777777777777777777775

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.24  E-value=3  Score=31.91  Aligned_cols=79  Identities=14%  Similarity=0.096  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHH---ccCChHHHHHHHHhcC-CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686           63 THHALMVSVLA---RAGLFDEARIFIQEYH-MERYP---EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS  135 (282)
Q Consensus        63 ~~~~~li~~~~---~~g~~~~A~~l~~~m~-~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li  135 (282)
                      .+-+.||+...   ..++.++++.+++.|. ..|+.   .++-..|  +.+.|+|++|.++|++..+-.| . ..|..-+
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~-~-~p~~kAL   83 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG-A-PPYGKAL   83 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC-C-chHHHHH
Confidence            34455555443   3688889999888886 56663   3333333  6778899999999988876555 2 3555555


Q ss_pred             HHHHHcCchh
Q 043686          136 NWYAAEAKWD  145 (282)
Q Consensus       136 ~~y~~~g~~~  145 (282)
                      -++|-...-|
T Consensus        84 ~A~CL~al~D   93 (153)
T TIGR02561        84 LALCLNAKGD   93 (153)
T ss_pred             HHHHHHhcCC
Confidence            5555544333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.90  E-value=13  Score=34.18  Aligned_cols=98  Identities=15%  Similarity=0.101  Sum_probs=45.4

Q ss_pred             hcCChHHHHHHHHH--hHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686            7 LHGQRELGLSLFSE--LEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         7 ~~g~~~~A~~lf~~--m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      -.|+++++.+..+.  +.  ..+ | ..-.+.++.-+-+.|..+.|.++-.     |.   ..-.+..-++|+++.|.++
T Consensus       273 ~~~d~~~v~~~i~~~~ll--~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~  340 (443)
T PF04053_consen  273 LRGDFEEVLRMIAASNLL--PNI-P-KDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEI  340 (443)
T ss_dssp             HTT-HHH-----HHHHTG--GG----HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHH
T ss_pred             HcCChhhhhhhhhhhhhc--ccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHH
Confidence            45677776666652  11  112 2 3447778888888888888887765     11   1223333344444444444


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043686           85 IQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQ  119 (282)
Q Consensus        85 ~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  119 (282)
                      -++..   +...|..|-....+.|+++-|++.|.+
T Consensus       341 a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  341 AKELD---DPEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             CCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            33322   334455555555555555555544443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.79  E-value=5.5  Score=33.60  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhh---ccCCCCh---hHHHHHHHHHHccCChHHHHHHHHhcC----CCCC-HHHHHHHH
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFN---RIRSPKV---THHALMVSVLARAGLFDEARIFIQEYH----MERY-PEVLRALL  101 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~----~~p~-~~~~~~li  101 (282)
                      -|+.-++.+ ++|++.+|...|.   .+.+-+.   -.+-.|...+...|+.++|..+|..+.    -.|- ..+.--|-
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            466655543 4455777777777   2221122   234457777777788887777776653    1121 35666667


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686          102 EGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      .+..+.|+.++|...|++..+--|.+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            77777777788888887777666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.79  E-value=1.1  Score=25.42  Aligned_cols=28  Identities=11%  Similarity=0.201  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           94 PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ..+++.|-..|...|++++|..++++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            3578888899999999999999999877

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.76  E-value=2.2  Score=37.92  Aligned_cols=81  Identities=15%  Similarity=0.076  Sum_probs=57.9

Q ss_pred             HHHHccCChHHHHHHHHhcC-----------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH-----------------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      +.|.|.|++..|..-|++..                 -..-+.+++.|..+|.|.+++.+|.+.-.+..+++|+|+...-
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy  295 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY  295 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence            46788888888888876621                 1122467888999999999999999999999999998865444


Q ss_pred             HHHHHHHHcCchhhhhcc
Q 043686          133 MLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus       133 ~Li~~y~~~g~~~~A~~~  150 (282)
                      ==-.+|...|+++.|+..
T Consensus       296 RrG~A~l~~~e~~~A~~d  313 (397)
T KOG0543|consen  296 RRGQALLALGEYDLARDD  313 (397)
T ss_pred             HHHHHHHhhccHHHHHHH
Confidence            334445555555555443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=88.68  E-value=8.4  Score=28.81  Aligned_cols=82  Identities=7%  Similarity=0.019  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 043686           34 FAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQ  109 (282)
Q Consensus        34 y~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~  109 (282)
                      ...++..+.+.+........++    .+ ..+...+|.+|..|++.. -++..+.++.   .++.+....+++-|-+.+.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCc
Confidence            4567777777788888888887    32 356778889999998763 3455566652   1223334446667777777


Q ss_pred             hhHHHHHHHHH
Q 043686          110 VKTGKRVIDQL  120 (282)
Q Consensus       110 ~~~A~~~~~~m  120 (282)
                      ++++..++.++
T Consensus        85 ~~~~~~l~~k~   95 (140)
T smart00299       85 YEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHHhh
Confidence            77777777665

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=88.49  E-value=3.5  Score=30.98  Aligned_cols=83  Identities=13%  Similarity=0.123  Sum_probs=56.8

Q ss_pred             HHHccCChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCChh---HHHHHHHHHHHcCch
Q 043686           71 VLARAGLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELK-PLSAE---NYIMLSNWYAAEAKW  144 (282)
Q Consensus        71 ~~~~~g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-p~~~~---~~~~Li~~y~~~g~~  144 (282)
                      +++..|+++.|.+.|.+.. + ..+...||.=-.++--.|+.++|+.=+.+..++. |....   +|.-=-..|-..|+.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            4567888888888888754 3 3457788888888888888888888888887653 32212   233333457777777


Q ss_pred             hhhhcccce
Q 043686          145 DVVNQAYSW  153 (282)
Q Consensus       145 ~~A~~~~~~  153 (282)
                      |+|..-|..
T Consensus       132 d~AR~DFe~  140 (175)
T KOG4555|consen  132 DAARADFEA  140 (175)
T ss_pred             HHHHHhHHH
Confidence            777664433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.72  E-value=4.9  Score=31.83  Aligned_cols=19  Identities=26%  Similarity=0.361  Sum_probs=9.5

Q ss_pred             hhhcCChHHHHHHHHHhHH
Q 043686            5 YSLHGQRELGLSLFSELEK   23 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~   23 (282)
                      |++.|+.++|++.|.++.+
T Consensus        46 ~~~~Gd~~~A~k~y~~~~~   64 (177)
T PF10602_consen   46 YCKIGDLEEALKAYSRARD   64 (177)
T ss_pred             HHHhhhHHHHHHHHHHHhh
Confidence            4445555555555555444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=87.65  E-value=3.3  Score=40.45  Aligned_cols=99  Identities=12%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHH--
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDE--   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~--   80 (282)
                      +.|.|+.++|..+++.... .+.. |..|..++-..|.+.|..++|..+++  .+-.|+..-...+..+|.|.+.+.+  
T Consensus        53 l~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999998765 4443 77899999999999999999999999  7788887788889999999887764  


Q ss_pred             --HHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 043686           81 --ARIFIQEYHMERYPEVLRALLEGCRIH  107 (282)
Q Consensus        81 --A~~l~~~m~~~p~~~~~~~li~~~~~~  107 (282)
                        |.++++..+  .+.+.+-++++-+.+.
T Consensus       131 kaa~~LyK~~p--k~~yyfWsV~Slilqs  157 (932)
T KOG2053|consen  131 KAALQLYKNFP--KRAYYFWSVISLILQS  157 (932)
T ss_pred             HHHHHHHHhCC--cccchHHHHHHHHHHh
Confidence              555665443  3355556666665544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=87.64  E-value=3.7  Score=31.24  Aligned_cols=86  Identities=15%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             hcCCCHHHHHHHhh-----ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCC---
Q 043686           42 STAGMVEEGWLCFN-----RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQ---  109 (282)
Q Consensus        42 ~~~g~~~~a~~l~~-----~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~---  109 (282)
                      .+.|++++|.+.|+     ....| .....--|+.+|.+.|++++|...+++.. ..|+  -+-|--.+.|++....   
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~  100 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEG  100 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhh
Confidence            45577888888887     22222 23455567888888888888888888743 3443  2334444444333222   


Q ss_pred             --------------hhHHHHHHHHHHhcCCCC
Q 043686          110 --------------VKTGKRVIDQLCELKPLS  127 (282)
Q Consensus       110 --------------~~~A~~~~~~m~~~~p~~  127 (282)
                                    ..+|..-|+.....-|++
T Consensus       101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen  101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence                          456777777777777744

>PRK11906 transcriptional regulator; Provisional

Probab=86.95  E-value=10  Score=34.68  Aligned_cols=121  Identities=9%  Similarity=-0.040  Sum_probs=84.3

Q ss_pred             HHH--HHHHHHHhcC-----CCHHHHHHHhh--c---cCCCC-hhHHHHHHHHHHc---------cCChHHHHHHHHhcC
Q 043686           32 LTF--AAVLHACSTA-----GMVEEGWLCFN--R---IRSPK-VTHHALMVSVLAR---------AGLFDEARIFIQEYH   89 (282)
Q Consensus        32 ~ty--~~ll~a~~~~-----g~~~~a~~l~~--~---g~~p~-~~~~~~li~~~~~---------~g~~~~A~~l~~~m~   89 (282)
                      ..|  ..++.|....     -..+.|..+|.  .   .+.|+ ...|..+-.++..         .....+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            345  5566666552     23567788888  3   67776 5555555444322         234556666666543


Q ss_pred             -CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           90 -MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        90 -~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                       +.| |..+...+-....-.++++.|...|++...++|+.+.+|...--...-+|+.++|.+..+
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             555 467777777767777889999999999999999998888888777888999998877443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.89  E-value=4.2  Score=39.06  Aligned_cols=127  Identities=14%  Similarity=0.082  Sum_probs=91.5

Q ss_pred             HHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCC
Q 043686           12 ELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHME   91 (282)
Q Consensus        12 ~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~   91 (282)
                      .+-+++++.+....|..-.-.|.+-.+.-+...|...+|.++-..=--||...|=-=+.+++..+++++-+++-+.++ .
T Consensus       665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-s  743 (829)
T KOG2280|consen  665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-S  743 (829)
T ss_pred             HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-C
Confidence            344555666554244444555666677777778888888888772233787888888888999999999888887776 2


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           92 RYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        92 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                        ..-|--.+.+|.+.|+.++|.+++-..   .+ .    .-.+.+|.+.|++.+|..
T Consensus       744 --PIGy~PFVe~c~~~~n~~EA~KYiprv---~~-l----~ekv~ay~~~~~~~eAad  791 (829)
T KOG2280|consen  744 --PIGYLPFVEACLKQGNKDEAKKYIPRV---GG-L----QEKVKAYLRVGDVKEAAD  791 (829)
T ss_pred             --CCCchhHHHHHHhcccHHHHhhhhhcc---CC-h----HHHHHHHHHhccHHHHHH
Confidence              345667788899999999998887643   22 2    167888899999888877

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.86  E-value=1.3  Score=23.57  Aligned_cols=28  Identities=11%  Similarity=-0.048  Sum_probs=22.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           99 ALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        99 ~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      .+..+|.+.|++++|.+.|++.....|+
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566778888999999999988887774

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.69  E-value=13  Score=28.76  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=18.5

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHcCchhh
Q 043686          104 CRIHVQVKTGKRVIDQLCELKPL-SAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus       104 ~~~~g~~~~A~~~~~~m~~~~p~-~~~~~~~Li~~y~~~g~~~~  146 (282)
                      +...++.++|...+.+.....|. ....+..+...|...+..++
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE  220 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHH
Confidence            34444444444444444444443 23334444444444443333

>smart00028 TPR Tetratricopeptide repeats

Probab=86.61  E-value=1.6  Score=22.11  Aligned_cols=30  Identities=17%  Similarity=0.084  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      +|..+...|...|++++|...|+...+..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            566677778888888888888887776666

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.56  E-value=4.7  Score=31.93  Aligned_cols=50  Identities=12%  Similarity=0.088  Sum_probs=28.8

Q ss_pred             CCCC-HHHHHHHHHHHHhcC----C-------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           90 MERY-PEVLRALLEGCRIHV----Q-------VKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        90 ~~p~-~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      +.|+ ..++..+-.+|...+    +       +++|.+.|+.....+|.+ ..|..-+.+..+
T Consensus        64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~k  125 (186)
T PF06552_consen   64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAK  125 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHT
T ss_pred             cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHh
Confidence            6787 456655665554433    2       445555555666789977 888877776644

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=86.41  E-value=9.6  Score=35.28  Aligned_cols=111  Identities=13%  Similarity=-0.006  Sum_probs=79.0

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhhccCC--C-----ChhHHHHHHHHHHccCChH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFNRIRS--P-----KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~~g~~--p-----~~~~~~~li~~~~~~g~~~   79 (282)
                      ....+.|.+++..+..   --|+..-|...-. .+...|++++|.+.|+..+.  .     ....+--+.-.+.-.++++
T Consensus       246 ~~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            5677889999999987   5699888777666 45567999999999992111  1     1223334556677789999


Q ss_pred             HHHHHHHhcC-C-CCCHHHHHHHHHH-HHhcCCh-------hHHHHHHHHHH
Q 043686           80 EARIFIQEYH-M-ERYPEVLRALLEG-CRIHVQV-------KTGKRVIDQLC  121 (282)
Q Consensus        80 ~A~~l~~~m~-~-~p~~~~~~~li~~-~~~~g~~-------~~A~~~~~~m~  121 (282)
                      +|.+.|..+. . .-...+|.-+..+ +...|+.       ++|.++|++..
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            9999999986 1 2234455555443 5566777       88888888876

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.19  E-value=14  Score=28.59  Aligned_cols=143  Identities=17%  Similarity=0.107  Sum_probs=97.4

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHhh--ccCCC----ChhHHHHHHHHHHccCC
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLH-ACSTAGMVEEGWLCFN--RIRSP----KVTHHALMVSVLARAGL   77 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~-a~~~~g~~~~a~~l~~--~g~~p----~~~~~~~li~~~~~~g~   77 (282)
                      +...++..++.+.+..... ....+. ........ .+...|++++|...+.  ....|    ....+......+...++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (291)
T COG0457         105 LEALGKYEEALELLEKALA-LDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR  182 (291)
T ss_pred             HHHHhhHHHHHHHHHHHHc-CCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC
Confidence            3445566778888888765 333221 22222222 6888999999999999  22444    23444455555778899


Q ss_pred             hHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           78 FDEARIFIQEYH-MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .+.|...+.+.. ..|+  ...+..+-..+...++.++|...+.......|.....+..+...+...+..+++..
T Consensus       183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (291)
T COG0457         183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE  257 (291)
T ss_pred             HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence            999999998865 3444  67888899999999999999999999998888533455555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.09  E-value=11  Score=34.02  Aligned_cols=53  Identities=6%  Similarity=-0.056  Sum_probs=29.3

Q ss_pred             HccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           73 ARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        73 ~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      .|.|++.+|.+.+.+-.      ..|++..|-..-....+.|+.++|..--++..+++|
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            45566666666665532      233344455555555666666666666665555555

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.80  E-value=17  Score=31.29  Aligned_cols=110  Identities=12%  Similarity=0.089  Sum_probs=76.3

Q ss_pred             HHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHH---HHHHHHhcCChhH
Q 043686           39 HACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRA---LLEGCRIHVQVKT  112 (282)
Q Consensus        39 ~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~---li~~~~~~g~~~~  112 (282)
                      ......|++.+|..+|+  .-..| +...--.|..+|...|+++.|..++..++-.-...-|..   -|.-+.+.....+
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            35667889999999888  33333 355667888999999999999999999983222223332   3444555555554


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          113 GKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       113 A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ...+-.+. .-+|+|...-..|...|.-.|+.++|..
T Consensus       222 ~~~l~~~~-aadPdd~~aa~~lA~~~~~~g~~e~Ale  257 (304)
T COG3118         222 IQDLQRRL-AADPDDVEAALALADQLHLVGRNEAALE  257 (304)
T ss_pred             HHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            44443332 4578888888889999999999888866

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.12  E-value=7.3  Score=32.87  Aligned_cols=89  Identities=12%  Similarity=0.070  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIMLS  135 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~Li  135 (282)
                      -|+.-++.| +.|++.+|...|.... --|+    ...+--|..++...|++++|..+|..+.+-.|++   +.+.--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            588777665 5788999999998853 2232    3466679999999999999999999999655543   45666667


Q ss_pred             HHHHHcCchhhhhcccce
Q 043686          136 NWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~~~  153 (282)
                      ....+.|+-|+|...+..
T Consensus       223 ~~~~~l~~~d~A~atl~q  240 (262)
T COG1729         223 VSLGRLGNTDEACATLQQ  240 (262)
T ss_pred             HHHHHhcCHHHHHHHHHH
Confidence            777788888888764443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.94  E-value=5  Score=28.32  Aligned_cols=47  Identities=13%  Similarity=0.054  Sum_probs=23.4

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHH
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLE  102 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~  102 (282)
                      ..+.|+..+..+-+.++.|.+++..|.++|+..+  +..+..+|..++.
T Consensus        36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq   84 (103)
T cd00923          36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ   84 (103)
T ss_pred             cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence            4455555555555555555555555555555433  3333334444443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=83.76  E-value=19  Score=32.47  Aligned_cols=133  Identities=9%  Similarity=-0.000  Sum_probs=84.9

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHH-------------HHHhcCCCHHHHHHHhh--ccCC-----CChhHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVL-------------HACSTAGMVEEGWLCFN--RIRS-----PKVTHHA   66 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll-------------~a~~~~g~~~~a~~l~~--~g~~-----p~~~~~~   66 (282)
                      -.++.+.|...|.+-.+   +-|+...-.+.-             +-..+.|++..|.+.+.  .++.     |+...|.
T Consensus       215 y~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~  291 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG  291 (486)
T ss_pred             cccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence            35667788888888766   557665443322             23467899999999998  4444     4455566


Q ss_pred             HHHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHHH--HHhcCChhHHHHHHHHHHhcC--CCChhHHHHHHHHHHHc
Q 043686           67 LMVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLEG--CRIHVQVKTGKRVIDQLCELK--PLSAENYIMLSNWYAAE  141 (282)
Q Consensus        67 ~li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~--p~~~~~~~~Li~~y~~~  141 (282)
                      ..-....+.|+..+|..--++.. .-| ..++.-+..+  +.-.+.|++|.+-|+...+..  +..-.++.-...++-+.
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKS  370 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            66677788999999998877754 333 4455555554  445588999999998876443  32334444444444444


Q ss_pred             Cc
Q 043686          142 AK  143 (282)
Q Consensus       142 g~  143 (282)
                      .+
T Consensus       371 kR  372 (486)
T KOG0550|consen  371 KR  372 (486)
T ss_pred             hh
Confidence            33

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=83.66  E-value=2.5  Score=31.78  Aligned_cols=47  Identities=11%  Similarity=-0.024  Sum_probs=42.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          103 GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       103 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.+..|+++.|++.|.+...+.|..+..||.=..+|--.|+.++|..
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALd   98 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALD   98 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHH
Confidence            47788999999999999999999999999999999999999888865

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.61  E-value=2.1  Score=24.14  Aligned_cols=27  Identities=15%  Similarity=0.240  Sum_probs=22.3

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEY   88 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m   88 (282)
                      ..+++.|...|...|++++|.+++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence            357888999999999999999998874

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=83.60  E-value=22  Score=29.30  Aligned_cols=102  Identities=11%  Similarity=0.042  Sum_probs=65.1

Q ss_pred             HHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC---ChhHHH--HHHHHHHccCChHHHHHHHHh
Q 043686           15 LSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP---KVTHHA--LMVSVLARAGLFDEARIFIQE   87 (282)
Q Consensus        15 ~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~   87 (282)
                      .+.-+++..   +.++..-+|.||--|.-.-.+.+|-+.|.  .|+.|   |..+++  .-|....+.|++++|.+....
T Consensus        13 ~~w~~~~~~---~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~   89 (228)
T KOG2659|consen   13 EEWEEQLMK---VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQ   89 (228)
T ss_pred             hhhHHHHhc---cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHH
Confidence            334444433   66777778887776666555666777776  67666   344444  566777888999999998888


Q ss_pred             cC---CCCCHHHHHHHHH----HHHhcCChhHHHHHHHH
Q 043686           88 YH---MERYPEVLRALLE----GCRIHVQVKTGKRVIDQ  119 (282)
Q Consensus        88 m~---~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~  119 (282)
                      ..   +.-|...+-.|..    -..|.|..++|++..+.
T Consensus        90 l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~  128 (228)
T KOG2659|consen   90 LNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT  128 (228)
T ss_pred             hChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            64   4445434443332    25666777777776664

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.25  E-value=6  Score=34.29  Aligned_cols=78  Identities=8%  Similarity=-0.038  Sum_probs=45.2

Q ss_pred             cCChHHHHHHHHHhHHhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHH
Q 043686            8 HGQRELGLSLFSELEKKS---SIEIDPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~---g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      ..++++++..+-+++. .   -..|+...|+ ++.-|- .=+.+++..+..    .|+-||.++++.+||.+-+.++..+
T Consensus        77 ~~~idd~~~~LyKlRh-s~~a~~~~~~~~~~-~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~  153 (418)
T KOG4570|consen   77 REEIDDAEYYLYKLRH-SPNAWYLRNWTIHT-WIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKD  153 (418)
T ss_pred             ccchhHHHHHHHHHhc-CcchhhhccccHHH-HHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHH
Confidence            4456666666666554 2   1333332222 222222 234556666665    7777777777777777777777777


Q ss_pred             HHHHHHhc
Q 043686           81 ARIFIQEY   88 (282)
Q Consensus        81 A~~l~~~m   88 (282)
                      |.++.-.|
T Consensus       154 aa~vvt~~  161 (418)
T KOG4570|consen  154 AASVVTEV  161 (418)
T ss_pred             HHHHHHHH
Confidence            77766554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=83.07  E-value=18  Score=27.36  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=47.7

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCCh--------------------hH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPKV--------------------TH   64 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~~--------------------~~   64 (282)
                      .-.|.+++..++..+... +   .+..-||-+|--...+-+-+-..+.++ -|--.|.                    ..
T Consensus        13 ildG~V~qGveii~k~v~-S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~   88 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVN-S---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEY   88 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHH-H---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HH
T ss_pred             HHhchHHHHHHHHHHHcC-c---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHH
Confidence            346778888888888766 2   334445554433333333333333333 1111111                    11


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ...-++.+.+.|+-|.-.++..+..  -+|+....-.+-++|.+.|+..+|.+++.+..
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC  147 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC  147 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            2222333444444444444444421  23444444455555555555555555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=82.79  E-value=20  Score=27.82  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             HHHHHHHH---HhcCCCHHHHHHHhh--ccCCCChhHHH-HHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHHHH
Q 043686           33 TFAAVLHA---CSTAGMVEEGWLCFN--RIRSPKVTHHA-LMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEGCR  105 (282)
Q Consensus        33 ty~~ll~a---~~~~g~~~~a~~l~~--~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~~~  105 (282)
                      +.+.||..   -.+.++.+++..++.  +-+.|.....- .-.-.+.+.|++++|.++|+++. -.|....-.+|+..|-
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            44455443   345678999999998  77777643332 23344668899999999999986 3344344455555444


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686          106 IHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN  148 (282)
Q Consensus       106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~  148 (282)
                      +..+=..=...-.++.+..| + ..-..|++.+-...+...|.
T Consensus        89 ~~~~D~~Wr~~A~evle~~~-d-~~a~~Lv~~Ll~~~~~~~a~  129 (160)
T PF09613_consen   89 YALGDPSWRRYADEVLESGA-D-PDARALVRALLARADLEPAH  129 (160)
T ss_pred             HHcCChHHHHHHHHHHhcCC-C-hHHHHHHHHHHHhccccchh
Confidence            44322222222333444444 3 34445666665555555443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.69  E-value=5.1  Score=31.73  Aligned_cols=60  Identities=7%  Similarity=-0.036  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      ..+..+.+.|++.|+.+.|.+.|.++.   ..|.  +..+-.+|......+++..+.....+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            467789999999999999999999986   2333  56788899999999999999999998874

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.47  E-value=3.4  Score=33.85  Aligned_cols=72  Identities=13%  Similarity=0.029  Sum_probs=47.8

Q ss_pred             HHHHHHHHHccCChHHHHHHHHh-cCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHHHH
Q 043686           65 HALMVSVLARAGLFDEARIFIQE-YHMER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIMLSN  136 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~-m~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~Li~  136 (282)
                      .+.-|+.+-+.+.+.+|.....+ .+-+| |..+-..++.-||-.|+|++|..-++-.-.+.|..   ...|..+|+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34455666677778888877765 33344 46667778888888888888887777766777643   234544544

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=82.29  E-value=5.8  Score=28.28  Aligned_cols=47  Identities=13%  Similarity=0.054  Sum_probs=23.9

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHH
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLE  102 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~  102 (282)
                      ..+.|+..+..+-+.++.|.+++..|.++|+..+  +.+...+|..++.
T Consensus        39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ   87 (108)
T ss_dssp             SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred             cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            5555666666666666666666666666666554  3333335555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=82.24  E-value=5.9  Score=37.66  Aligned_cols=46  Identities=17%  Similarity=0.047  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCC
Q 043686           11 RELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSP   60 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p   60 (282)
                      +-+-+.-+++|++ .|-.||..-..   ..|+-.|.+.+|-++|. .|.+.
T Consensus       616 ~L~li~EL~~~k~-rge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~en  662 (1081)
T KOG1538|consen  616 YLELISELEERKK-RGETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHEN  662 (1081)
T ss_pred             HHHHHHHHHHHHh-cCCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchh
Confidence            3455556777888 88889876433   34677788999999888 55443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.16  E-value=1.8  Score=23.48  Aligned_cols=31  Identities=13%  Similarity=0.076  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MERY   93 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~   93 (282)
                      .+|..+...|...|++++|.+.|++.. +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            467788888899999999999888753 5554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=81.79  E-value=12  Score=31.97  Aligned_cols=59  Identities=10%  Similarity=0.018  Sum_probs=34.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CC-CChhHHHHHHHHHHHcCchhhhhc
Q 043686           91 ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCEL-KP-LSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        91 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~p-~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .++..+--++|..++..++|.+-.++++.-... .| .|...|..+|+.-.+.|+..-..+
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k  259 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK  259 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence            344555566666666666766665555554421 22 234666777777777776665555

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=81.17  E-value=2.8  Score=36.66  Aligned_cols=86  Identities=14%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             HhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCChhHHHH
Q 043686           41 CSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      |-+.|.+++|...+.  ..+.| |.++|..--.+|.+...+..|+.=-.... .. .-+-.|+-=..+-...|..++|.+
T Consensus       107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk  186 (536)
T KOG4648|consen  107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK  186 (536)
T ss_pred             hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            556677777777776  44555 66667666667777666665554333322 01 112334433444344445555555


Q ss_pred             HHHHHHhcCCC
Q 043686          116 VIDQLCELKPL  126 (282)
Q Consensus       116 ~~~~m~~~~p~  126 (282)
                      =++...+++|.
T Consensus       187 D~E~vL~LEP~  197 (536)
T KOG4648|consen  187 DCETVLALEPK  197 (536)
T ss_pred             hHHHHHhhCcc
Confidence            55555566774

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=81.01  E-value=25  Score=32.50  Aligned_cols=14  Identities=14%  Similarity=-0.035  Sum_probs=9.5

Q ss_pred             ChHHHHHHHHHhHH
Q 043686           10 QRELGLSLFSELEK   23 (282)
Q Consensus        10 ~~~~A~~lf~~m~~   23 (282)
                      -+.+|.++|++-.+
T Consensus       215 Ti~Eae~l~rqAvk  228 (539)
T PF04184_consen  215 TIVEAEELLRQAVK  228 (539)
T ss_pred             CHHHHHHHHHHHHH
Confidence            35677777777654

The molecular function of this protein is uncertain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 29/270 (10%), Positives = 85/270 (31%), Gaps = 95/270 (35%)

Query: 78  FDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML--- 134
           F++A  F+  +  +   ++ +++L            K  ID +   K   +    +    
Sbjct: 25  FEDA--FVDNFDCKDVQDMPKSILS-----------KEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 135 ----SNWYAAEAKWDVVNQAYSWI-------------------EFRNKVH----VFGTGD 167
                       + +V+   Y ++                   E R++++    VF   +
Sbjct: 72  LSKQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 168 VSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLH--------------YVDEERK----- 208
           V   R +  + +L+  + +     LRP  +  +                +  + +     
Sbjct: 131 V--SRLQ-PYLKLRQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 209 ---WTQIGHS-------EILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEG 258
              W  + +        E+L      I     +    + N+++R   H     + ++++ 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLLKS 240

Query: 259 E------II---IKDPSCFHHFEYGFCSCR 279
           +      ++   +++   ++ F      C+
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLS---CK 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.85
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.84
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.59
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.57
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.37
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.28
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.24
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.24
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.24
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.24
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.23
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.23
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.23
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.21
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.19
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.19
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.17
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.04
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.02
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.02
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.99
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.96
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.94
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.93
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.88
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.84
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.83
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.81
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.8
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.75
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.73
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.72
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.71
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.69
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.66
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.65
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.54
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.54
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.54
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.52
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.47
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.47
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.46
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.46
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.44
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.43
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.41
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.41
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.4
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.4
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.39
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.39
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.37
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.36
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.35
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.35
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.35
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.34
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.33
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.31
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.31
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.3
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.3
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.29
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.27
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.27
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.26
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.25
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.25
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.24
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.22
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.2
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.2
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.18
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.18
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.18
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.14
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.1
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.05
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.03
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.99
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.98
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.98
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.97
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.93
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.92
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.92
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.9
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.89
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.82
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.8
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.71
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.71
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.7
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.67
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.61
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.54
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.43
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.33
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.32
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.14
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.1
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.0
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.97
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.96
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.87
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.77
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.36
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.33
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.33
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.23
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.87
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.65
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	95.28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.16
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.09
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.83
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.05
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	92.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	91.63
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.59
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	89.28
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.91
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	88.86
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.69
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.54
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.35
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.34
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.22
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	84.06

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.2e-34  Score=262.73  Aligned_cols=174  Identities=12%  Similarity=0.094  Sum_probs=162.6

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCC---------HHHHHHHhh----ccCCCChhHHHH
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGM---------VEEGWLCFN----RIRSPKVTHHAL   67 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~---------~~~a~~l~~----~g~~p~~~~~~~   67 (282)
                      +|++|++.|++++|+++|++|.+ .|++||.+|||+||++|++.+.         +++|.++|+    .|+.||.+|||+
T Consensus        32 ~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           32 KLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             HHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            37899999999999999999999 9999999999999999998765         788999998    999999999999


Q ss_pred             HHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcC
Q 043686           68 MVSVLARAGLFDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        68 li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      ||++|++.|++++|.++|++|.   +.||++|||+||.+|++.|++++|.++|++|.  ++.| +..||++||++|++.|
T Consensus       111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g  189 (501)
T 4g26_A          111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTK  189 (501)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCC
Confidence            9999999999999999999997   89999999999999999999999999999999  6788 6699999999999999


Q ss_pred             chhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhh
Q 043686          143 KWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKW  209 (282)
Q Consensus       143 ~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~  209 (282)
                      ++++|                             .    ++|++|++.|..|+..|+..++..++..
T Consensus       190 ~~d~A-----------------------------~----~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          190 NADKV-----------------------------Y----KTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             CHHHH-----------------------------H----HHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CHHHH-----------------------------H----HHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            97666                             4    8999999999999999998888776654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=4.5e-31  Score=241.88  Aligned_cols=197  Identities=13%  Similarity=0.075  Sum_probs=157.1

Q ss_pred             HHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCC---------
Q 043686           12 ELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGL---------   77 (282)
Q Consensus        12 ~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~---------   77 (282)
                      ..+..+++++++ .+..+.+ ..++.+|++|++.|++++|.++|+    .|+.||.+|||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            456777788887 8776654 468999999999999999999999    9999999999999999998765         


Q ss_pred             hHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           78 FDEARIFIQEYH---MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        78 ~~~A~~l~~~m~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +++|.++|++|.   +.||.+|||+||.+|++.|++++|.++|++|.  ++.| +..|||+||.+|++.|++++|     
T Consensus        86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A-----  159 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKA-----  159 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHH-----
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHH-----
Confidence            689999999997   89999999999999999999999999999999  5778 679999999999999986665     


Q ss_pred             eeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHHHHHhhhccCCCCCe
Q 043686          153 WIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGAT  232 (282)
Q Consensus       153 ~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  232 (282)
                                              .    ++|++|.+.|+.||..||..++.                            
T Consensus       160 ------------------------~----~l~~~M~~~G~~Pd~~ty~~Li~----------------------------  183 (501)
T 4g26_A          160 ------------------------Y----EVDAHMVESEVVPEEPELAALLK----------------------------  183 (501)
T ss_dssp             ------------------------H----HHHHHHHHTTCCCCHHHHHHHHH----------------------------
T ss_pred             ------------------------H----HHHHHHHhcCCCCCHHHHHHHHH----------------------------
Confidence                                    4    89999999999999999866554                            


Q ss_pred             EEEeeccccccchHHHHHHHHHhhcceEEeecCCccccccCCccC
Q 043686          233 IHVTKNLRMRHICHDFAKAISKMVEGEIIIKDPSCFHHFEYGFCS  277 (282)
Q Consensus       233 ~~~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~  277 (282)
                           +|++.|+.++|.++|++|.+.+.. ++..+|+.+++.+|+
T Consensus       184 -----~~~~~g~~d~A~~ll~~Mr~~g~~-ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          184 -----VSMDTKNADKVYKTLQRLRDLVRQ-VSKSTFDMIEEWFKS  222 (501)
T ss_dssp             -----HHHHTTCHHHHHHHHHHHHHHTSS-BCHHHHHHHHHHHHS
T ss_pred             -----HHhhCCCHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHHhc
Confidence                 566667777888888888877654 577777777776665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.85  E-value=6.1e-22  Score=188.80  Aligned_cols=122  Identities=15%  Similarity=0.046  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHhh-------ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC---CCCCHHHHHHH
Q 043686           31 PLTFAAVLHACSTAGMVEEGWLCFN-------RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH---MERYPEVLRAL  100 (282)
Q Consensus        31 ~~ty~~ll~a~~~~g~~~~a~~l~~-------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~p~~~~~~~l  100 (282)
                      ..|||+||++||+.|++++|.++|+       .|+.||++|||+||++||+.|++++|.++|++|.   +.||++|||+|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4699999999999999999999995       5899999999999999999999999999999997   89999999999


Q ss_pred             HHHHHhcCCh-hHHHHHHHHHH--hcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          101 LEGCRIHVQV-KTGKRVIDQLC--ELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       101 i~~~~~~g~~-~~A~~~~~~m~--~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      |.++|+.|+. ++|.++|++|.  |+.| |..+|+++++.+.+.+-++...++...
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~~eR~~vL~~Vrkv~P~  261 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEEDRATVLKAVHKVKPT  261 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccChhhHHHHHHHHHHhCcc
Confidence            9999999985 78999999999  6888 569999999999999888877775443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.85  E-value=1.5e-21  Score=186.18  Aligned_cols=123  Identities=13%  Similarity=0.051  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH--hcCCCChhHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH------MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC--ELKPLSAENYIM  133 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~~p~~~~~~~~  133 (282)
                      ..|||+||++|||+|++++|.++|++|.      +.||++|||+||.|||+.|++++|.++|++|.  |+.| |++|||+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt  205 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence            5689999999999999999999998763      78999999999999999999999999999999  6888 7799999


Q ss_pred             HHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhh
Q 043686          134 LSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIG  213 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~  213 (282)
                      ||++||+.|+..+                            +|.    ++|++|.+.|+.||..||..+++++.+...+.
T Consensus       206 LI~glcK~G~~~e----------------------------~A~----~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~  253 (1134)
T 3spa_A          206 ALQCMGRQDQDAG----------------------------TIE----RCLEQMSQEGLKLQALFTAVLLSEEDRATVLK  253 (1134)
T ss_dssp             HHHHHHHHTCCHH----------------------------HHH----HHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHhCCCcHH----------------------------HHH----HHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence            9999999987422                            234    89999999999999999999999999987775


Q ss_pred             hhHH
Q 043686          214 HSEI  217 (282)
Q Consensus       214 ~~~~  217 (282)
                      ...+
T Consensus       254 ~Vrk  257 (1134)
T 3spa_A          254 AVHK  257 (1134)
T ss_dssp             HHGG
T ss_pred             HHHH
Confidence            3333

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.84  E-value=8.5e-23  Score=189.69  Aligned_cols=269  Identities=9%  Similarity=-0.078  Sum_probs=194.6

Q ss_pred             ChhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCCh
Q 043686            1 MILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLF   78 (282)
Q Consensus         1 li~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~   78 (282)
                      ++.+|.+.|++++|+.+|++|..   ..||..++..+..+|.+.|++++|..+|+  ....++..+++.++.+|.+.|++
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  166 (597)
T 2xpi_A           90 WRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDW  166 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhH
Confidence            36789999999999999999986   56899999999999999999999999999  55788999999999999999999


Q ss_pred             HHHHHHHHhc-CC-----------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH------
Q 043686           79 DEARIFIQEY-HM-----------------ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML------  134 (282)
Q Consensus        79 ~~A~~l~~~m-~~-----------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L------  134 (282)
                      ++|.++|+++ +.                 .+++.+|+.++.+|.+.|++++|.++|++|.+..|++...+..+      
T Consensus       167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  246 (597)
T 2xpi_A          167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL  246 (597)
T ss_dssp             HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcc
Confidence            9999999964 31                 12589999999999999999999999999999999776665544      


Q ss_pred             --------------------------------HHHHHHcCchhhhhcccceeee--cCeE--EEEecCCCCCCChHHHHH
Q 043686          135 --------------------------------SNWYAAEAKWDVVNQAYSWIEF--RNKV--HVFGTGDVSCPRSEGIFW  178 (282)
Q Consensus       135 --------------------------------i~~y~~~g~~~~A~~~~~~~~~--~~~~--~~~i~~~~~~~~~~~a~~  178 (282)
                                                      +.+|.+.|++++|.+.++.+..  .+..  +.+...+.+.|+.++|. 
T Consensus       247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-  325 (597)
T 2xpi_A          247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL-  325 (597)
T ss_dssp             CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH-
T ss_pred             cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH-
Confidence                                            5567788999999987776544  2222  56677788899999988 


Q ss_pred             HHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHH-HHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhc
Q 043686          179 ELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEI-LALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVE  257 (282)
Q Consensus       179 ~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~  257 (282)
                         .+|++|.+.+ ..+..++..++..+.+.+....+.. +.......+........+...|.++|++++|.++|+++.+
T Consensus       326 ---~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  401 (597)
T 2xpi_A          326 ---AITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST  401 (597)
T ss_dssp             ---HHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence               8888887654 1244555555555555555542221 1111122222111111245667777777777777777765


Q ss_pred             ceEEeecCCccccccCCccCCC
Q 043686          258 GEIIIKDPSCFHHFEYGFCSCR  279 (282)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~  279 (282)
                      .+  +.+...|+.+..++++.|
T Consensus       402 ~~--~~~~~~~~~l~~~~~~~g  421 (597)
T 2xpi_A          402 MD--PQFGPAWIGFAHSFAIEG  421 (597)
T ss_dssp             HC--TTCHHHHHHHHHHHHHHT
T ss_pred             hC--CCCHHHHHHHHHHHHHcC
Confidence            32  123334444444444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.83  E-value=3.2e-21  Score=179.10  Aligned_cols=251  Identities=10%  Similarity=-0.017  Sum_probs=171.2

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      +.+|.+.|++++|+++|++|.+ .+ +.+..+++.++.++.+.|+.++|.++|+  ....| +..+|+.++.+|.+.|++
T Consensus       312 ~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  389 (597)
T 2xpi_A          312 ADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI  389 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence            3455666666666666666654 32 1244556666666666666666666666  22333 577888888888888999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                      ++|.++|+++. ..| +..+|+.++.+|.+.|++++|.++|++|.+..|++..+|+.++.+|.+.|++++|.+.+..+..
T Consensus       390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99988888865 344 4788888888999999999999999888888888888888888999999999888886665432


Q ss_pred             cC---e--EEEEecCCCCCCChHHHHHHHHHHHHHHHhC----CCccC--CCcccccchhhhhhhhhhh-hHHHHHHhhh
Q 043686          157 RN---K--VHVFGTGDVSCPRSEGIFWELQSLMKKMEGD----SLRPK--PDFSLHYVDEERKWTQIGH-SEILALSFGL  224 (282)
Q Consensus       157 ~~---~--~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~----g~~pd--~~t~~~~~~~~~~~~~~~~-~~~l~~~~~~  224 (282)
                      ..   .  .+.+...+.+.|+.++|.    .+|++|.+.    +..|+  ..++..+...+.+.+.... ...+.....+
T Consensus       470 ~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          470 LFQYDPLLLNELGVVAFNKSDMQTAI----NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             HCCCCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHH----HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            11   1  145666677888888888    555555443    77787  4566677777777766652 2222233333


Q ss_pred             ccCCCCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686          225 ISTQVGATIHVTKNLRMRHICHDFAKAISKMVEG  258 (282)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~  258 (282)
                      .+........+...|.+.|+.++|.++|+++.+.
T Consensus       546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            3322222223566777889999999999888764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.59  E-value=1.8e-16  Score=139.63  Aligned_cols=247  Identities=13%  Similarity=0.062  Sum_probs=140.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~   78 (282)
                      ..|.+.|++++|++.|+++.+   +.|+. .+|..+..++.+.|++++|.+.|+  ....|+ ...+..+...|.+.|++
T Consensus        75 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  151 (388)
T 1w3b_A           75 NVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL  151 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH
Confidence            356667777777777777665   33543 356667777777777777777776  444554 34455666666777777


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                      ++|.+.|+++. ..|+ ..+|+.+...|.+.|++++|.+.|+++.+..|++...|..+...|...|++++|...+.....
T Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  231 (388)
T 1w3b_A          152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            77777777654 3444 667777777777777777777777777777776666777777777777777777664332111


Q ss_pred             ----cCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCC
Q 043686          157 ----RNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQV  229 (282)
Q Consensus       157 ----~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  229 (282)
                          ...+ ..+...+...|+.++|.    ..|+++.+.  .|+. .++..+...+.+.+... ....+.....+.+...
T Consensus       232 ~~p~~~~~~~~l~~~~~~~g~~~~A~----~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  305 (388)
T 1w3b_A          232 LSPNHAVVHGNLACVYYEQGLIDLAI----DTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA  305 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred             hCcCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence                0000 22334455667777776    666666543  3443 22333333334444433 1111222222222211


Q ss_pred             CCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686          230 GATIHVTKNLRMRHICHDFAKAISKMVEG  258 (282)
Q Consensus       230 ~~~~~~~~~~~~~g~~~~a~~~~~~m~~~  258 (282)
                      .....+...+...|+.+.|.++++++...
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          306 DSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            11112344455667777777777766553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.57  E-value=1.1e-15  Score=134.56  Aligned_cols=248  Identities=10%  Similarity=-0.008  Sum_probs=179.7

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCC
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGL   77 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~   77 (282)
                      ..+|.+.|++++|++.|.++.+   ..|+.. .+..+-..+...|++++|.+.|+  ....|+ ..+|+.+...|.+.|+
T Consensus       108 ~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  184 (388)
T 1w3b_A          108 AAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE  184 (388)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3568889999999999999887   456654 45556667888899999999998  445564 7889999999999999


Q ss_pred             hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686           78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                      +++|.+.|+++. ..|+ ...|..+...+...|++++|...|++..+..|+++.++..+...|.+.|++++|...+....
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  264 (388)
T 1w3b_A          185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999875 5565 78899999999999999999999999999999888999999999999999999998665533


Q ss_pred             ecCe-----EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCC
Q 043686          156 FRNK-----VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQ  228 (282)
Q Consensus       156 ~~~~-----~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~  228 (282)
                      ..+.     ...+...+.+.|+.++|.    ..|+++.+.  .|+. .++..+...+.+.+... ....+.....+.+..
T Consensus       265 ~~~p~~~~~~~~l~~~~~~~g~~~~A~----~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          265 ELQPHFPDAYCNLANALKEKGSVAEAE----DCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HTCSSCHHHHHHHHHHHHHHSCHHHHH----HHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred             hhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            2111     133444566778888887    667766654  3443 34444444444444444 222222222332222


Q ss_pred             CCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686          229 VGATIHVTKNLRMRHICHDFAKAISKMVEG  258 (282)
Q Consensus       229 ~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~  258 (282)
                      ......+...+.+.|+.++|.+.|+++.+.
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          339 AAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            211223456677999999999999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.52  E-value=1.8e-14  Score=128.85  Aligned_cols=249  Identities=10%  Similarity=-0.044  Sum_probs=176.5

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ...|.+.|++++|+++|+++.+ . .+.+..+|..+..++.+.|++++|...|+  ....| +...+..+...|.+.|++
T Consensus        33 ~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  110 (450)
T 2y4t_A           33 GKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL  110 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence            3568899999999999999987 3 23467889999999999999999999999  44455 477899999999999999


Q ss_pred             HHHHHHHHhcC-CCCC-H---HHHHHHHHH------------HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           79 DEARIFIQEYH-MERY-P---EVLRALLEG------------CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      ++|.+.|+++. ..|+ .   .+|..++..            |.+.|++++|.+.|+++.+..|.++.++..+..+|.+.
T Consensus       111 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  190 (450)
T 2y4t_A          111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE  190 (450)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence            99999999975 5676 4   677776544            89999999999999999999999989999999999999


Q ss_pred             Cchhhhhcccceeeec---Ce--EEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCccccc-------------c
Q 043686          142 AKWDVVNQAYSWIEFR---NK--VHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHY-------------V  203 (282)
Q Consensus       142 g~~~~A~~~~~~~~~~---~~--~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~-------------~  203 (282)
                      |++++|...+......   +.  ...+...+...|+.++|.    ..|+++.+  ..|+.......             .
T Consensus       191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~  264 (450)
T 2y4t_A          191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL----SEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESA  264 (450)
T ss_dssp             TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999866554321   11  134455567788899988    67776663  45665443221             2


Q ss_pred             hhhhhhhhhh-hhHHHHHHhhhccCCCC----CeEEEeeccccccchHHHHHHHHHhhcc
Q 043686          204 DEERKWTQIG-HSEILALSFGLISTQVG----ATIHVTKNLRMRHICHDFAKAISKMVEG  258 (282)
Q Consensus       204 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~a~~~~~~m~~~  258 (282)
                      ..+.+.+... ....+.....+.+..+.    ....+...+.+.|+.+.|.++++++...
T Consensus       265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  324 (450)
T 2y4t_A          265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM  324 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            2333333333 11112222222222110    1112345566778888888888776543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.50  E-value=1.7e-14  Score=128.98  Aligned_cols=249  Identities=10%  Similarity=-0.005  Sum_probs=180.7

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-h---hHHHHHHHH----
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-V---THHALMVSV----   71 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~---~~~~~li~~----   71 (282)
                      ..+|.+.|++++|+..|+++.+ .+ +.+..++..+..++.+.|++++|.+.|+  ....|+ .   ..+..++..    
T Consensus        67 ~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  144 (450)
T 2y4t_A           67 ATVFLAMGKSKAALPDLTKVIQ-LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ  144 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence            3568899999999999999987 43 2346788999999999999999999999  556675 3   566666444    


Q ss_pred             --------HHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           72 --------LARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        72 --------~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                              |.+.|++++|.+.|+++. ..| +..+|..+...|.+.|++++|.+.|+++.+..|+++.+|..+...|.+.
T Consensus       145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  224 (450)
T 2y4t_A          145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL  224 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                    899999999999999975 344 6889999999999999999999999999999998999999999999999


Q ss_pred             CchhhhhcccceeeecCeE-----EEE------------ecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCC-----cc
Q 043686          142 AKWDVVNQAYSWIEFRNKV-----HVF------------GTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPD-----FS  199 (282)
Q Consensus       142 g~~~~A~~~~~~~~~~~~~-----~~~------------i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~-----t~  199 (282)
                      |++++|...+..+.....-     ..+            ...+...|+.++|.    .+|+++.+  ..|+..     .+
T Consensus       225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~----~~~~~~l~--~~p~~~~~~~~~~  298 (450)
T 2y4t_A          225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT----SKYESVMK--TEPSIAEYTVRSK  298 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH----HHHHHHHH--HCCSSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHh--cCCcchHHHHHHH
Confidence            9999999866554221110     111            34456678888887    77777765  345532     22


Q ss_pred             cccchhhhhhhhhh-hhHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcc
Q 043686          200 LHYVDEERKWTQIG-HSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEG  258 (282)
Q Consensus       200 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~  258 (282)
                      ..+...+.+.+... ....+.....+.+........+...+...|+.+.|.+.+++..+.
T Consensus       299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          299 ERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            33334444444443 122222222333222222222455677899999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.37  E-value=9.1e-13  Score=112.32  Aligned_cols=255  Identities=8%  Similarity=-0.044  Sum_probs=178.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC-Ch
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG-LF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g-~~   78 (282)
                      ..+...|++++|+++|+++.+ .. +.+...+..+...+...|+.++|..+++  ....| +...|..+...|...| ++
T Consensus        30 ~~~~~~g~~~~A~~~~~~~l~-~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  107 (330)
T 3hym_B           30 ERHYYNCDFKMCYKLTSVVME-KD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN  107 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-cC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence            456778999999999999877 32 2233456667788889999999999998  44455 5778899999999999 99


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                      ++|.+.|++.. ..|+ ..+|..+...|...|++++|.+.|+++.+..|++..++..+...|...|++++|...+.....
T Consensus       108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  187 (330)
T 3hym_B          108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS  187 (330)
T ss_dssp             HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999854 5554 788999999999999999999999999999998888899999999999999999985544322


Q ss_pred             cCe----E-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCc---cCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhcc
Q 043686          157 RNK----V-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLR---PKP-DFSLHYVDEERKWTQIG-HSEILALSFGLIS  226 (282)
Q Consensus       157 ~~~----~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~---pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~  226 (282)
                      ...    . ..+...+...|+.++|...+++.++.....+-.   |+. .++..+...+.+.+... ....+.....+.+
T Consensus       188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  267 (330)
T 3hym_B          188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP  267 (330)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence            111    1 233444567888999985555555444333322   222 23333333444444443 2222223333333


Q ss_pred             CCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686          227 TQVGATIHVTKNLRMRHICHDFAKAISKMVEGE  259 (282)
Q Consensus       227 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~  259 (282)
                      ........+...+.+.|+.+.|.+++++..+.+
T Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            322222224555668999999999999887653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.32  E-value=2.6e-11  Score=103.19  Aligned_cols=143  Identities=10%  Similarity=0.097  Sum_probs=80.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHH-HHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAA-VLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~-ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~   82 (282)
                      .|.+.|+.++|++.|+++.. .+..|+..++.. +-.++.+.|++++|.+.++.  .++...+..++..|.+.|++++|.
T Consensus        74 ~~~~~~~~~~A~~~l~~ll~-~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~  150 (291)
T 3mkr_A           74 YLASHSRRDAIVAELDREMS-RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR  150 (291)
T ss_dssp             HHHCSTTHHHHHHHHHHHHH-SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCCcHHHHHHHHHHHHh-cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            44555666666666666655 544454433333 33456666666666666664  234556666666666666666666


Q ss_pred             HHHHhcC-CCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           83 IFIQEYH-MERYPEVL---RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        83 ~l~~~m~-~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.|+++. ..|+....   .+++..+...|++++|..+|+++.+..|+++..++.+..+|.+.|++++|..
T Consensus       151 ~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~  221 (291)
T 3mkr_A          151 KELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG  221 (291)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666654 34442111   1122223334666666666666666666666666666666666666666644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.30  E-value=6.7e-11  Score=92.79  Aligned_cols=147  Identities=10%  Similarity=0.024  Sum_probs=127.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ..|.+.|++++|++.|++..+   +.| +..++..+-..+.+.|++++|...+.  ....| +...+..+...+...+++
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (184)
T 3vtx_A           13 DKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK   89 (184)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence            357789999999999999887   445 45678888889999999999999999  44555 467788888999999999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +.|.+.+.+.. ..| +..+|..+...|.+.|++++|.+.|++..++.|.++.+|..+...|.+.|++++|...+.
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  165 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK  165 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999854 455 488999999999999999999999999999999999999999999999999999876443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=6.2e-12  Score=108.14  Aligned_cols=144  Identities=11%  Similarity=0.056  Sum_probs=78.4

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC---C-hhHHHHH---------
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP---K-VTHHALM---------   68 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p---~-~~~~~~l---------   68 (282)
                      |.+.|++++|+..|++..+ .  .| +...|..+...+.+.|++++|...|+  ....|   + ...+..+         
T Consensus        47 ~~~~~~~~~A~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  123 (359)
T 3ieg_A           47 FLAMGKSKAALPDLTKVIA-L--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL  123 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHH-h--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH
Confidence            4445555555555555544 1  23 33445555555555555555555555  33334   2 2233333         


Q ss_pred             ---HHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           69 ---VSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        69 ---i~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                         ...+...|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.++++....|.++.++..+...|...|+
T Consensus       124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  203 (359)
T 3ieg_A          124 RSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD  203 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence               345555555555555555543 222 355566666666666666666666666666666666666666666666666


Q ss_pred             hhhhhccc
Q 043686          144 WDVVNQAY  151 (282)
Q Consensus       144 ~~~A~~~~  151 (282)
                      +++|...+
T Consensus       204 ~~~A~~~~  211 (359)
T 3ieg_A          204 HELSLSEV  211 (359)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666533

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.28  E-value=3.4e-11  Score=99.02  Aligned_cols=180  Identities=11%  Similarity=-0.027  Sum_probs=142.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..|...|++++|++.|++..+ .. +.+...+..+...+...|++++|.+.++  ....| +...+..+...|.+.|+++
T Consensus        45 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  122 (252)
T 2ho1_A           45 LGYLQRGNTEQAKVPLRKALE-ID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE  122 (252)
T ss_dssp             HHHHHTTCTGGGHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCChHHHHHHHHHHHh-cC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence            457789999999999999887 32 2367788889999999999999999999  34445 5788999999999999999


Q ss_pred             HHHHHHHhcC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceee
Q 043686           80 EARIFIQEYH---MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus        80 ~A~~l~~~m~---~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                      +|.+.|++..   ..|+ ...|..+...|.+.|++++|.+.|+++....|.+..++..+...|.+.|++++|...+....
T Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999864   3464 77899999999999999999999999999999888999999999999999999988554432


Q ss_pred             ecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          156 FRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       156 ~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      .....     ..+...+...|+.++|.    ..++++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~g~~~~A~----~~~~~~~  236 (252)
T 2ho1_A          203 QGGGQNARSLLLGIRLAKVFEDRDTAA----SYGLQLK  236 (252)
T ss_dssp             TTSCCCHHHHHHHHHHHHHTTCHHHHH----HHHHHHH
T ss_pred             HhCcCcHHHHHHHHHHHHHccCHHHHH----HHHHHHH
Confidence            21110     12222334566666666    4444444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.28  E-value=7e-12  Score=102.95  Aligned_cols=180  Identities=10%  Similarity=-0.014  Sum_probs=137.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC--------hhHHHHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK--------VTHHALMVSVL   72 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~--------~~~~~~li~~~   72 (282)
                      ..|.+.|++++|++.|++..+ ..  ++...|..+..++...|++++|.+.++  ..+.|+        ..+|..+...|
T Consensus        13 ~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~   89 (258)
T 3uq3_A           13 NKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY   89 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence            357789999999999999988 66  888899999999999999999999999  333332        57889999999


Q ss_pred             HccCChHHHHHHHHhcC---------------------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686           73 ARAGLFDEARIFIQEYH---------------------------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        73 ~~~g~~~~A~~l~~~m~---------------------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  124 (282)
                      .+.|++++|.+.|++..                           ..|+ ..+|..+...|.+.|++++|.+.|++..+..
T Consensus        90 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  169 (258)
T 3uq3_A           90 HKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA  169 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            99999999999998853                           2333 5678888888999999999999999999989


Q ss_pred             CCChhHHHHHHHHHHHcCchhhhhcccceeeecC--eE---EEEecCCCCCCChHHHHHHHHHHHH
Q 043686          125 PLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN--KV---HVFGTGDVSCPRSEGIFWELQSLMK  185 (282)
Q Consensus       125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~  185 (282)
                      |.++.+|..+...|.+.|++++|...+.......  ..   ..+-..+...|+.++|...+++.++
T Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9888889999999999999999887554322110  00   1222334456666666644433333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.26  E-value=2.1e-10  Score=88.96  Aligned_cols=146  Identities=11%  Similarity=0.021  Sum_probs=124.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..+.+.|++++|++.|++..+ . .+.+..++..+...+...|++++|...++  ....| +...+..+...|.+.|+++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   93 (186)
T 3as5_A           16 ISHAKAGRYSQAVMLLEQVYD-A-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYD   93 (186)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCC-T-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHH-h-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHH
Confidence            457788999999999999875 3 23467788888889999999999999999  33444 5778899999999999999


Q ss_pred             HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           80 EARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        80 ~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +|.+.|++..  ...+..+|..+...|.+.|++++|.+.++++....|.++.++..+...|.+.|++++|...
T Consensus        94 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999864  3446889999999999999999999999999999998889999999999999998888553

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.24  E-value=1.9e-11  Score=106.31  Aligned_cols=203  Identities=7%  Similarity=-0.032  Sum_probs=133.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..+.+.|++++|+++|+++.+ .. +.+..+|..+...+.+.|++++|...|+  ....| +..+|..+...|.+.|+++
T Consensus        73 ~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  150 (365)
T 4eqf_A           73 LKRLKEGDLPVTILFMEAAIL-QD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ  150 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH-hC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHH
Confidence            457788999999999999887 32 2366788889999999999999999998  44455 4788999999999999999


Q ss_pred             HHHHHHHhcC-CCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCchh
Q 043686           80 EARIFIQEYH-MERY-----------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAAEAKWD  145 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~~g~~~  145 (282)
                      +|.+.|+++. ..|+           ..+++.+...|.+.|++++|.+.|+++.+..|.  ++.++..+...|.+.|+++
T Consensus       151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~  230 (365)
T 4eqf_A          151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN  230 (365)
T ss_dssp             HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence            9999998864 2332           223344566777778888888888887777776  6677777778888888888


Q ss_pred             hhhcccceeeecC-----eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC-Ccccccchhhhhhhhhh
Q 043686          146 VVNQAYSWIEFRN-----KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP-DFSLHYVDEERKWTQIG  213 (282)
Q Consensus       146 ~A~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~  213 (282)
                      +|...+.......     ....+...+...|+.++|.    ..|++..+.  .|+. .++..+...+.+.+...
T Consensus       231 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~----~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV----EAYTRALEI--QPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHhc--CCCchHHHHHHHHHHHHCCCHH
Confidence            7777444322110     1133344456677777777    555554432  3553 33444444455555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.24  E-value=1e-10  Score=101.61  Aligned_cols=180  Identities=7%  Similarity=0.035  Sum_probs=133.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-----------hhHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-----------VTHHALM   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-----------~~~~~~l   68 (282)
                      ..|.+.|++++|++.|++..+ .  .| +..+|..+...+.+.|++++|...|+  ..+.|+           ..++..+
T Consensus       107 ~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l  183 (365)
T 4eqf_A          107 ITQAENENEQAAIVALQRCLE-L--QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM  183 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHh-c--CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH
Confidence            568889999999999999987 3  34 47789999999999999999999999  333343           2233455


Q ss_pred             HHHHHccCChHHHHHHHHhcC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686           69 VSVLARAGLFDEARIFIQEYH-MER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      ...|.+.|++++|.+.|+++. ..|   +..+|+.+...|.+.|++++|.+.|+++.+..|+++.+|+.+...|.+.|++
T Consensus       184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  263 (365)
T 4eqf_A          184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS  263 (365)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            888999999999999999865 344   5889999999999999999999999999999998889999999999999999


Q ss_pred             hhhhcccceeeec--CeE---EEEecCCCCCCChHHHHHHHHHHHH
Q 043686          145 DVVNQAYSWIEFR--NKV---HVFGTGDVSCPRSEGIFWELQSLMK  185 (282)
Q Consensus       145 ~~A~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~a~~~~~~l~~  185 (282)
                      ++|...+......  +..   ..+...+...|+.++|...+++.++
T Consensus       264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999855443211  111   3344456677889999844444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.24  E-value=8.1e-11  Score=95.52  Aligned_cols=170  Identities=12%  Similarity=0.088  Sum_probs=123.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHcc----
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARA----   75 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~----   75 (282)
                      .+.+.|++++|+..|++..+   ..| +...+..+-..+.+.|++++|...++  ..+.|+ ...+..+...|.+.    
T Consensus        14 ~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~   90 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA   90 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence            56788999999999998876   445 45677777778888999999999988  556664 66788888888888    


Q ss_pred             -------CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686           76 -------GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        76 -------g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~  146 (282)
                             |++++|.+.|++.. ..|+ ..+|..+-..|.+.|++++|...|++..++. +++..+..+...|...|++++
T Consensus        91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~  169 (217)
T 2pl2_A           91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE  169 (217)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred             hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence                   99999999888854 5665 7788888888899999999999999888777 677888888888999999988


Q ss_pred             hhcccceeeec----CeE-EEEecCCCCCCChHHHH
Q 043686          147 VNQAYSWIEFR----NKV-HVFGTGDVSCPRSEGIF  177 (282)
Q Consensus       147 A~~~~~~~~~~----~~~-~~~i~~~~~~~~~~~a~  177 (282)
                      |...+......    ... ..+...+...|+.++|.
T Consensus       170 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          170 ALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            88855442211    111 22333455667777776

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.24  E-value=1.4e-11  Score=111.49  Aligned_cols=82  Identities=10%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~   80 (282)
                      .|.+.|++++|++.|+++.. .  .||..+|..+..++.+.|++++|.+.++  ....|+ ...|..+..+|.+.|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   91 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALE-L--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD   91 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHh-c--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence            56778888888888888887 3  3788888888888888888888888888  444554 5678888888888888888


Q ss_pred             HHHHHHhc
Q 043686           81 ARIFIQEY   88 (282)
Q Consensus        81 A~~l~~~m   88 (282)
                      |.+.|+++
T Consensus        92 A~~~~~~~   99 (514)
T 2gw1_A           92 AMFDLSVL   99 (514)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.24  E-value=1.2e-10  Score=110.81  Aligned_cols=145  Identities=12%  Similarity=0.085  Sum_probs=132.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~   78 (282)
                      ..|.+.|++++|++.|++..+   +.|+ ..+|+.+-.++.+.|++++|.+.|+  ..+.|+ ...|+.+...|.+.|++
T Consensus        17 ~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~   93 (723)
T 4gyw_A           17 NIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV   93 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            357889999999999999887   5676 5688899999999999999999999  667785 78999999999999999


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      ++|.+.|++.. +.|+ ..+|+.|...|.+.|++++|.+.|++..+++|+++..|..|...|...|++++|.+.
T Consensus        94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~  167 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER  167 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence            99999999854 6776 889999999999999999999999999999999999999999999999999999873

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.23  E-value=3.4e-10  Score=92.09  Aligned_cols=181  Identities=13%  Similarity=0.049  Sum_probs=129.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..+.+.|++++|+.+|++..+ . .+.+...+..+...+.+.|++++|...++  ....| +..++..+...|.+.|+++
T Consensus        31 ~~~~~~~~~~~A~~~~~~~l~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  108 (243)
T 2q7f_A           31 GRGSEFGDYEKAAEAFTKAIE-E-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK  108 (243)
T ss_dssp             -----------CCTTHHHHHT-T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHH
Confidence            356778999999999999876 2 22356778888888889999999999998  33344 5778888889999999999


Q ss_pred             HHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec
Q 043686           80 EARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR  157 (282)
Q Consensus        80 ~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~  157 (282)
                      +|.+.|++.. . ..+..+|..+...|.+.|++++|.+.++++.+..|++...+..+...|.+.|++++|...+......
T Consensus       109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  188 (243)
T 2q7f_A          109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ  188 (243)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999998864 3 3457888888899999999999999999999888888888889999999999999998855443211


Q ss_pred             C--eE---EEEecCCCCCCChHHHHHHHHHHHHHHHh
Q 043686          158 N--KV---HVFGTGDVSCPRSEGIFWELQSLMKKMEG  189 (282)
Q Consensus       158 ~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~~  189 (282)
                      .  ..   ..+...+...|+.++|.    ..+++..+
T Consensus       189 ~~~~~~~~~~la~~~~~~~~~~~A~----~~~~~~~~  221 (243)
T 2q7f_A          189 DPGHADAFYNAGVTYAYKENREKAL----EMLDKAID  221 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTHHH----HHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHccCHHHHH----HHHHHHHc
Confidence            1  01   23334456678888887    55655543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.23  E-value=4.2e-10  Score=90.21  Aligned_cols=147  Identities=7%  Similarity=-0.053  Sum_probs=126.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc-CCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARA-GLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~-g~~   78 (282)
                      ..|.+.|++++|++.|++..+ .. +.+...+..+...+...|++++|.+.++  ....| +..++..+...|.+. |++
T Consensus        16 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~   93 (225)
T 2vq2_A           16 MEYMRGQDYRQATASIEDALK-SD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP   93 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence            467889999999999999887 32 2357788889999999999999999999  44445 577899999999999 999


Q ss_pred             HHHHHHHHhcC---CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           79 DEARIFIQEYH---MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        79 ~~A~~l~~~m~---~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ++|.+.|+++.   ..|+ ..+|..+...|.+.|++++|.+.|+++.+..|.++..+..+...|.+.|++++|...+
T Consensus        94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  170 (225)
T 2vq2_A           94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF  170 (225)
T ss_dssp             HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999864   2344 6889999999999999999999999999999988899999999999999988885533

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.23  E-value=4.4e-10  Score=92.27  Aligned_cols=149  Identities=9%  Similarity=-0.022  Sum_probs=129.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--cc--CCC-ChhHHHHHHHHHHccCC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RI--RSP-KVTHHALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g--~~p-~~~~~~~li~~~~~~g~   77 (282)
                      ..|.+.|++++|++.|++..+ .. +.+...+..+...+...|++++|.+.++  ..  ..| +...+..+...|.+.|+
T Consensus        79 ~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  156 (252)
T 2ho1_A           79 VVFQTEMEPKLADEEYRKALA-SD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK  156 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-HC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence            467889999999999999887 32 2367788889999999999999999999  33  456 46788899999999999


Q ss_pred             hHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           78 FDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.++++.+..|++...+..+...|.+.|+.++|.+.+..
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  234 (252)
T 2ho1_A          157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ  234 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999864 344 5889999999999999999999999999999998888999999999999999999875544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.21  E-value=3.4e-11  Score=98.10  Aligned_cols=149  Identities=11%  Similarity=-0.007  Sum_probs=120.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..|.+.|++++|++.|++..+ .. +.+..++..+...+...|++++|.+.++  ....| +...+..+...|.+.|+++
T Consensus        65 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  142 (243)
T 2q7f_A           65 NLLSSVNELERALAFYDKALE-LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK  142 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence            457788899999999998876 32 2356778888888888999999999888  33334 5677888888899999999


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +|.+.+++.. ..| +..+|..+...|.+.|++++|.+.|+++.+..|++..++..+...|.+.|++++|...+..
T Consensus       143 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999998854 334 5788888888899999999999999998888888888888899999999999998876654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.20  E-value=4.5e-14  Score=125.44  Aligned_cols=220  Identities=10%  Similarity=0.077  Sum_probs=65.8

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQ   86 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~   86 (282)
                      +.|++++|.++++++..     |  .+|+.|..++.+.|++++|.+.|..  .||..+|..++..+.+.|++++|++.++
T Consensus        15 ~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            45677888888887754     3  3788888888888888888888863  2566678888888888888888888665


Q ss_pred             hcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEec
Q 043686           87 EYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGT  165 (282)
Q Consensus        87 ~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~  165 (282)
                      ... ..|++.+.+.|+.+|.+.|+++++.++++     .| +..+|+.+.+.|...|++++|...++.+   .....+..
T Consensus        86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---~n~~~LA~  156 (449)
T 1b89_A           86 MARKKARESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV---SNFGRLAS  156 (449)
T ss_dssp             -----------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT---TCHHHHHH
T ss_pred             HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---hhHHHHHH
Confidence            543 34556778888888888888888777775     35 4468888888888888888888877655   23345566


Q ss_pred             CCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhhhhhhhhHHHHHHhhhccCCCCCeEEEeeccccccch
Q 043686          166 GDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKWTQIGHSEILALSFGLISTQVGATIHVTKNLRMRHIC  245 (282)
Q Consensus       166 ~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~  245 (282)
                      ++.+.|++++|.    +.+.++      .++.++...+.+|...+.+..+.....  .+...+.... .++.-|.+.|..
T Consensus       157 ~L~~Lg~yq~AV----ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l--~L~~~ad~l~-~lv~~Yek~G~~  223 (449)
T 1b89_A          157 TLVHLGEYQAAV----DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL--HIVVHADELE-ELINYYQDRGYF  223 (449)
T ss_dssp             HHHTTTCHHHHH----HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT--TTTTCHHHHH-HHHHHHHHTTCH
T ss_pred             HHHHhccHHHHH----HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH--HHHhCHhhHH-HHHHHHHHCCCH
Confidence            667777788877    555555      245666666677776665543322111  1111111111 245667888888


Q ss_pred             HHHHHHHHHhhc
Q 043686          246 HDFAKAISKMVE  257 (282)
Q Consensus       246 ~~a~~~~~~m~~  257 (282)
                      ++|.++++.-..
T Consensus       224 eEai~lLe~aL~  235 (449)
T 1b89_A          224 EELITMLEAALG  235 (449)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC
Confidence            888888876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.19  E-value=2e-10  Score=104.64  Aligned_cols=146  Identities=10%  Similarity=-0.035  Sum_probs=129.0

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~   80 (282)
                      .+...|++++|++.|++..+   ..|+..+|..+...+...|++++|.+.|+  ....| +..+|..+...|.+.|++++
T Consensus       252 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (537)
T 3fp2_A          252 FHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN  328 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence            56778999999999999988   56888889999999999999999999999  44445 47889999999999999999


Q ss_pred             HHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           81 ARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        81 A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      |.+.|++.. ..|+ ..+|..+...|.+.|++++|.+.|+++.+..|+++..+..+...|.+.|++++|...+.
T Consensus       329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999865 4454 78899999999999999999999999999999998999999999999999988876443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.19  E-value=3.6e-10  Score=96.06  Aligned_cols=138  Identities=12%  Similarity=0.007  Sum_probs=117.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHH---HHHHHHHHccCC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHH---ALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~---~~li~~~~~~g~   77 (282)
                      ..|.+.|++++|++.|++       ..+...+..+...+.+.|++++|...|+  ....|+....   .+++..+...|+
T Consensus       109 ~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~  181 (291)
T 3mkr_A          109 SIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK  181 (291)
T ss_dssp             HHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred             HHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence            467899999999999987       2677899999999999999999999999  4456764321   234555666799


Q ss_pred             hHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686           78 FDEARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus        78 ~~~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A  147 (282)
                      +++|..+|+++.  ..++...|+.+..+|.+.|++++|.+.|++.....|+++.++..++..+...|+.+++
T Consensus       182 ~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence            999999999975  4456899999999999999999999999999999999999999999999999987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.18  E-value=2.2e-10  Score=99.30  Aligned_cols=146  Identities=13%  Similarity=0.028  Sum_probs=127.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC---CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI---DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL   77 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p---~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~   77 (282)
                      .+.+.|++++|++.|+++.+   ..|   +..++..+...+.+.|++++|...|+  ....| +..+|..+...|.+.|+
T Consensus       190 ~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  266 (368)
T 1fch_A          190 SLLSDSLFLEVKELFLAAVR---LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ  266 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHhhcccHHHHHHHHHHHHH---hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCC
Confidence            34478999999999999987   334   47899999999999999999999999  44455 47899999999999999


Q ss_pred             hHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-----------hhHHHHHHHHHHHcCch
Q 043686           78 FDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS-----------AENYIMLSNWYAAEAKW  144 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-----------~~~~~~Li~~y~~~g~~  144 (282)
                      +++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++..+.|++           ..+|..|..+|.+.|+.
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            999999999864 455 48899999999999999999999999999877766           78999999999999999


Q ss_pred             hhhhcccc
Q 043686          145 DVVNQAYS  152 (282)
Q Consensus       145 ~~A~~~~~  152 (282)
                      ++|.....
T Consensus       347 ~~A~~~~~  354 (368)
T 1fch_A          347 DAYGAADA  354 (368)
T ss_dssp             GGHHHHHT
T ss_pred             HhHHHhHH
Confidence            99976443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.17  E-value=7.8e-10  Score=95.76  Aligned_cols=181  Identities=9%  Similarity=0.005  Sum_probs=138.3

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..|.+.|++++|+..|+++.+ .. +.+..++..+..++.+.|++++|.+.|+  ....| +..++..+...|.+.|+++
T Consensus        72 ~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  149 (368)
T 1fch_A           72 LRRLQEGDLPNAVLLFEAAVQ-QD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  149 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-SC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence            357788888899999888877 32 2355677888888888888888888888  34445 5778888888888888888


Q ss_pred             HHHHHHHhcC-C-------------------------------------------------CC---CHHHHHHHHHHHHh
Q 043686           80 EARIFIQEYH-M-------------------------------------------------ER---YPEVLRALLEGCRI  106 (282)
Q Consensus        80 ~A~~l~~~m~-~-------------------------------------------------~p---~~~~~~~li~~~~~  106 (282)
                      +|.+.|+++. .                                                 .|   +..+|..+...|.+
T Consensus       150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~  229 (368)
T 1fch_A          150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  229 (368)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence            8888887632 1                                                 22   47889999999999


Q ss_pred             cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeec--CeE---EEEecCCCCCCChHHHHHHHH
Q 043686          107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFR--NKV---HVFGTGDVSCPRSEGIFWELQ  181 (282)
Q Consensus       107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~--~~~---~~~i~~~~~~~~~~~a~~~~~  181 (282)
                      .|++++|.+.|+++....|+++.+|..+...|.+.|++++|...+......  +..   ..+...+...|+.++|...++
T Consensus       230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  309 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL  309 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999899999999999999999999865543211  111   334445677889999984444


Q ss_pred             HHHH
Q 043686          182 SLMK  185 (282)
Q Consensus       182 ~l~~  185 (282)
                      +.+.
T Consensus       310 ~al~  313 (368)
T 1fch_A          310 EALN  313 (368)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.17  E-value=3.1e-11  Score=103.72  Aligned_cols=180  Identities=12%  Similarity=-0.043  Sum_probs=142.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..+.+.|++++|+..|++..+ .. +.+..++..+...+...|++++|...|+  ....| +...|..+...|.+.|+++
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~-~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   88 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVD-GD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD   88 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-hC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence            457889999999999999887 32 2356788888889999999999999999  55556 5788999999999999999


Q ss_pred             HHHHHHHhcC-CCC---C-HHHHHHH------------HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           80 EARIFIQEYH-MER---Y-PEVLRAL------------LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        80 ~A~~l~~~m~-~~p---~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      +|.+.|++.. ..|   + ...|..+            ...+...|++++|.+.++++.+..|.++..+..+...|.+.|
T Consensus        89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (359)
T 3ieg_A           89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEG  168 (359)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCC
Confidence            9999999864 677   4 5566555            578999999999999999999999999999999999999999


Q ss_pred             chhhhhcccceeeecCeE-----EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          143 KWDVVNQAYSWIEFRNKV-----HVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       143 ~~~~A~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      ++++|...+........-     ..+...+...|+.++|.    ..+++..
T Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~----~~~~~a~  215 (359)
T 3ieg_A          169 EPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL----SEVRECL  215 (359)
T ss_dssp             CHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH----HHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHH
Confidence            999999855443221111     22233345567788877    4555444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1.9e-10  Score=104.00  Aligned_cols=146  Identities=7%  Similarity=-0.097  Sum_probs=128.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..|.+.|++++|+..|++..+ .  .|+..++..+...+...|++++|.+.++  ....| +..+|..+...|.+.|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l~-~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAIE-L--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHH-H--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHh-h--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence            457889999999999999987 3  4667788899999999999999999999  44455 5778999999999999999


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++.+..|+++.++..+...|.+.|++++|...+
T Consensus       322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  395 (514)
T 2gw1_A          322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY  395 (514)
T ss_dssp             HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999864 455 47899999999999999999999999999999988899999999999999999987744

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.17  E-value=3.5e-10  Score=91.73  Aligned_cols=157  Identities=11%  Similarity=-0.034  Sum_probs=110.8

Q ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHH
Q 043686           28 EIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLE  102 (282)
Q Consensus        28 ~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~  102 (282)
                      +++...+..+-..+.+.|++++|...|+  ....| +...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3556677777777888888888888888  55666 46677788888888888888888888754 4554 677888888


Q ss_pred             HHHhc-----------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC-e---EEEEecCC
Q 043686          103 GCRIH-----------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN-K---VHVFGTGD  167 (282)
Q Consensus       103 ~~~~~-----------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~-~---~~~~i~~~  167 (282)
                      .|.+.           |++++|...|++..++.|+++..|..+...|...|++++|...+......+ .   ...+-..+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~  161 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELY  161 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            88888           888888888888888888887888888888888888888877544322111 0   02233335


Q ss_pred             CCCCChHHHHHHHHHHHHHHH
Q 043686          168 VSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       168 ~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      ...|+.++|.    ..|++..
T Consensus       162 ~~~g~~~~A~----~~~~~al  178 (217)
T 2pl2_A          162 LSMGRLDEAL----AQYAKAL  178 (217)
T ss_dssp             HHHTCHHHHH----HHHHHHH
T ss_pred             HHcCCHHHHH----HHHHHHH
Confidence            5677788877    4444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.17  E-value=1.2e-09  Score=87.61  Aligned_cols=145  Identities=10%  Similarity=0.022  Sum_probs=124.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcC-CCHHHHHHHhh--cc--CCCC-hhHHHHHHHHHHccC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTA-GMVEEGWLCFN--RI--RSPK-VTHHALMVSVLARAG   76 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~-g~~~~a~~l~~--~g--~~p~-~~~~~~li~~~~~~g   76 (282)
                      ..|...|++++|++.|++..+ .. +.+..++..+...+... |++++|...++  ..  ..|+ ...+..+...|.+.|
T Consensus        50 ~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  127 (225)
T 2vq2_A           50 EIYQYLKVNDKAQESFRQALS-IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG  127 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence            467889999999999999887 32 23677888999999999 99999999999  22  3343 678899999999999


Q ss_pred             ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP-LSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.++++....| ++...+..+...|.+.|+.++|..
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            9999999999865 445 488999999999999999999999999999888 888889989899999998877754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.16  E-value=6.4e-12  Score=111.69  Aligned_cols=166  Identities=8%  Similarity=0.016  Sum_probs=77.7

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      +.++.+.|++++|+..++..++ .  .|++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+.+.|...|++++|
T Consensus        68 ~~~ae~~g~~EeAi~yl~~ark-~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA  141 (449)
T 1b89_A           68 VQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAA  141 (449)
T ss_dssp             --------------------------------------------CHHHHTTTTTC---C----------------CTTTH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH-h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHH
Confidence            4456667777777775555544 2  45567777777778887777777777762   5666788888888888888888


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee-cCeE
Q 043686           82 RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF-RNKV  160 (282)
Q Consensus        82 ~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~-~~~~  160 (282)
                      ...|..++      .|..|.+++.+.|++++|.+.++++     .++.+|..++.+|...|+++.|......+.. ....
T Consensus       142 ~~~Y~~a~------n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l  210 (449)
T 1b89_A          142 KLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL  210 (449)
T ss_dssp             HHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHH
T ss_pred             HHHHHHhh------hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhH
Confidence            88888774      6888888888888888888888877     3568999999999999999999763322110 0001


Q ss_pred             EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          161 HVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       161 ~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      ..++..|.+.|+++++.    .+++.-.
T Consensus       211 ~~lv~~Yek~G~~eEai----~lLe~aL  234 (449)
T 1b89_A          211 EELINYYQDRGYFEELI----TMLEAAL  234 (449)
T ss_dssp             HHHHHHHHHTTCHHHHH----HHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHH----HHHHHHh
Confidence            23455677888888887    6665443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.15  E-value=4.8e-10  Score=91.87  Aligned_cols=150  Identities=11%  Similarity=0.035  Sum_probs=128.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCC--CCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--cc-----------------
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSS--IEID----PLTFAAVLHACSTAGMVEEGWLCFN--RI-----------------   57 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g--~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--~g-----------------   57 (282)
                      ..|.+.|++++|++.|.+..+ ..  ..|+    ..+|..+...+.+.|++++|...|+  ..                 
T Consensus        46 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a  124 (258)
T 3uq3_A           46 AAEYEKGEYETAISTLNDAVE-QGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE  124 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHH-hCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHH
Confidence            467889999999999999876 21  2223    4788889999999999999999998  22                 


Q ss_pred             ---------CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           58 ---------RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        58 ---------~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                               ..|+ ...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|++..+..|
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence                     4553 6678899999999999999999999864 344 588999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          126 LSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       126 ~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +++.+|..+...|.+.|++++|...+..
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999999875543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.13  E-value=8.5e-10  Score=93.73  Aligned_cols=185  Identities=11%  Similarity=-0.036  Sum_probs=134.5

Q ss_pred             hhhhhcC-ChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686            3 LGYSLHG-QRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g-~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~   77 (282)
                      ..|...| ++++|++.|++...   ..| +...|..+...+...|++++|.+.|+  ....| +...+..+...|.+.|+
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATT---LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHT---TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence            3567778 88999999998876   334 45678888888888999999999988  34444 35677778888999999


Q ss_pred             hHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------CCChhHHHHHHHHHHHcCchhh
Q 043686           78 FDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELK---------PLSAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------p~~~~~~~~Li~~y~~~g~~~~  146 (282)
                      +++|.+.|++.. ..| +..+|+.+...|.+.|++++|.+.|+++....         |..+.++..+...|.+.|++++
T Consensus       175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            999999998854 445 47888888889999999999999999888543         5556788888899999999999


Q ss_pred             hhcccceeee----cCeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686          147 VNQAYSWIEF----RNKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP  196 (282)
Q Consensus       147 A~~~~~~~~~----~~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~  196 (282)
                      |...+.....    .... ..+-..+...|+.++|.    ..+++..+  +.|+.
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~~~al~--~~p~~  303 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV----DYFHTALG--LRRDD  303 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH----HHHHTTTT--TCSCC
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH----HHHHHHHc--cCCCc
Confidence            8884443221    1111 23334455677888887    66665543  34554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.10  E-value=1.2e-09  Score=92.66  Aligned_cols=147  Identities=10%  Similarity=0.008  Sum_probs=128.3

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A   81 (282)
                      +...|++++|++.|++..+ .. +.+..++..+...+.+.|++++|.+.++  ....| +..++..+...|.+.|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALE-MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            7788999999999999887 32 2367889999999999999999999999  44445 478899999999999999999


Q ss_pred             HHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------------ChhHHHHHHHHHHHcCchhhh
Q 043686           82 RIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL------------SAENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus        82 ~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~------------~~~~~~~Li~~y~~~g~~~~A  147 (282)
                      .+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++....|.            +..+|..+...|.+.|+.++|
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            99999864 445 5889999999999999999999999999988887            678999999999999999999


Q ss_pred             hcccce
Q 043686          148 NQAYSW  153 (282)
Q Consensus       148 ~~~~~~  153 (282)
                      ...+..
T Consensus       306 ~~~~~~  311 (327)
T 3cv0_A          306 ELTYAQ  311 (327)
T ss_dssp             HHHTTC
T ss_pred             HHHHHH
Confidence            886543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.08  E-value=3.2e-09  Score=77.47  Aligned_cols=122  Identities=13%  Similarity=0.113  Sum_probs=84.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..|.+.|++++|+++|+++.+ .. +.+..++..+...+...|++++|...++  ....| +...+..+...|.+.|+++
T Consensus         9 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   86 (136)
T 2fo7_A            9 NAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD   86 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence            456677888888888887765 32 2345666777777777777888877777  22333 4556777777777778888


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      +|.+.|+++. ..| +..+|..+...|.+.|++++|.+.|+++....|.
T Consensus        87 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            8877777754 233 4667777777777778888888777777766663

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.07  E-value=8.6e-10  Score=93.57  Aligned_cols=180  Identities=12%  Similarity=0.057  Sum_probs=136.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHH-----------
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALM-----------   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~l-----------   68 (282)
                      ..|.+.|++++|++.|++..+ .. +.+..++..+...+...|++++|.+.++  ....|+ ...+..+           
T Consensus        63 ~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (327)
T 3cv0_A           63 LTQAENEKDGLAIIALNHARM-LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN  140 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHh-cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHH
Confidence            467889999999999999987 32 2367788899999999999999999998  444454 3333333           


Q ss_pred             ---HH-HHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           69 ---VS-VLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        69 ---i~-~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                         .. .+...|++++|.+.+++.. ..| +..+|..+...|.+.|++++|.+.++++....|+++.++..+...|.+.|
T Consensus       141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          141 VQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             -----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence               22 3778899999999999864 344 58899999999999999999999999999999988889999999999999


Q ss_pred             chhhhhcccceeeecC--eE---EEEecCCCCCCChHHHHHHHHHHHHHHH
Q 043686          143 KWDVVNQAYSWIEFRN--KV---HVFGTGDVSCPRSEGIFWELQSLMKKME  188 (282)
Q Consensus       143 ~~~~A~~~~~~~~~~~--~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~  188 (282)
                      ++++|...+.......  ..   ..+...+...|+.++|.    ..+++..
T Consensus       221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~a~  267 (327)
T 3cv0_A          221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA----KQLVRAI  267 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH----HHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH----HHHHHHH
Confidence            9999998554432111  11   23334466788899998    5555444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.04  E-value=1.2e-09  Score=99.24  Aligned_cols=145  Identities=10%  Similarity=0.007  Sum_probs=91.8

Q ss_pred             hhhhcCCh-HHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHcc----
Q 043686            4 GYSLHGQR-ELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARA----   75 (282)
Q Consensus         4 ~~~~~g~~-~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~----   75 (282)
                      .|...|++ ++|++.|++..+   ..|+ ...|..+-.++.+.|++++|.+.|+  ..+.|+...+..+...|.+.    
T Consensus       111 ~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~  187 (474)
T 4abn_A          111 ALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDS  187 (474)
T ss_dssp             HHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSC
T ss_pred             HHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCC
Confidence            34556666 666666666655   2343 4566666666666666666666666  45556656666666666666    


Q ss_pred             -----CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhc--------CChhHHHHHHHHHHhcCC---CChhHHHHHHHH
Q 043686           76 -----GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIH--------VQVKTGKRVIDQLCELKP---LSAENYIMLSNW  137 (282)
Q Consensus        76 -----g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~p---~~~~~~~~Li~~  137 (282)
                           |++++|.+.|++.. ..|+ ...|..+...|...        |++++|.+.|++..++.|   .++..|..+...
T Consensus       188 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~  267 (474)
T 4abn_A          188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL  267 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence                 66666666666643 3443 56666666666666        666666666666666666   666666666666


Q ss_pred             HHHcCchhhhhccc
Q 043686          138 YAAEAKWDVVNQAY  151 (282)
Q Consensus       138 y~~~g~~~~A~~~~  151 (282)
                      |.+.|++++|...+
T Consensus       268 ~~~~g~~~~A~~~~  281 (474)
T 4abn_A          268 HKYEESYGEALEGF  281 (474)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHH
Confidence            66666666666633

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.04  E-value=5.2e-09  Score=84.84  Aligned_cols=145  Identities=7%  Similarity=-0.092  Sum_probs=124.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~   80 (282)
                      .|.+.|++++|++.|++..+ ..-.++...+..+-.++.+.|++++|...|+  ....|+ ...|..+...|.+.|++++
T Consensus        16 ~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~   94 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQE   94 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHH
Confidence            56789999999999999887 4443788888888889999999999999999  667775 6788999999999999999


Q ss_pred             HHHHHHhcC-CCCC-H-------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCch--hhh
Q 043686           81 ARIFIQEYH-MERY-P-------EVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAAEAKW--DVV  147 (282)
Q Consensus        81 A~~l~~~m~-~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~~g~~--~~A  147 (282)
                      |.+.|++.. ..|+ .       .+|..+-..+.+.|++++|.+.|++..+..|+  ++..|..+...|...|+.  ++|
T Consensus        95 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a  174 (228)
T 4i17_A           95 YIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKA  174 (228)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999854 4554 4       56888888999999999999999999999998  788999999999988876  554


Q ss_pred             hc
Q 043686          148 NQ  149 (282)
Q Consensus       148 ~~  149 (282)
                      ..
T Consensus       175 ~~  176 (228)
T 4i17_A          175 TP  176 (228)
T ss_dssp             GG
T ss_pred             Hh
Confidence            44

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.02  E-value=5.6e-09  Score=76.17  Aligned_cols=119  Identities=19%  Similarity=0.199  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhc
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCRIH  107 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~  107 (282)
                      .|..+...+...|++++|..+++  ....| +...+..+...|.+.|++++|.+.|+++. .. .+..+|..+...|.+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            56777888899999999999999  33334 57788899999999999999999999865 33 4578899999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686          108 VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       108 g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      |++++|.+.++++....|.+..++..+...|.+.|++++|...+
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  126 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY  126 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence            99999999999999999988889999999999999988886544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.02  E-value=1.6e-09  Score=98.46  Aligned_cols=148  Identities=8%  Similarity=-0.059  Sum_probs=133.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHhh--ccCCCC-hhHHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTA---------GMVEEGWLCFN--RIRSPK-VTHHALMVS   70 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~---------g~~~~a~~l~~--~g~~p~-~~~~~~li~   70 (282)
                      ..|.+.|++++|++.|++..+   +.|+...+..+-..+...         |++++|.+.|+  ..+.|+ ...|..+..
T Consensus       145 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  221 (474)
T 4abn_A          145 EVYWKKGDVTSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN  221 (474)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            467889999999999999987   568888899999999999         99999999999  555664 788999999


Q ss_pred             HHHcc--------CChHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686           71 VLARA--------GLFDEARIFIQEYH-MER----YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus        71 ~~~~~--------g~~~~A~~l~~~m~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      +|.+.        |++++|.+.|++.. ..|    +...|..+...|.+.|++++|.+.|++..++.|++...+..+...
T Consensus       222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~  301 (474)
T 4abn_A          222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL  301 (474)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99998        99999999999865 566    689999999999999999999999999999999998999999999


Q ss_pred             HHHcCchhhhhcccce
Q 043686          138 YAAEAKWDVVNQAYSW  153 (282)
Q Consensus       138 y~~~g~~~~A~~~~~~  153 (282)
                      |...|++++|.+.+..
T Consensus       302 ~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          302 LEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999875544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.99  E-value=1.3e-09  Score=83.11  Aligned_cols=137  Identities=8%  Similarity=-0.063  Sum_probs=112.8

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      .+...|++++|++.|.+...   ..|+. ..+-.+-..|.+.|++++|.+.|+  ..+.| +...|..+...|.+.|+++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            35567899999999998654   34443 345567778999999999999999  66777 4789999999999999999


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHH-HHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRV-IDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      +|...|++.. +.|+ ..+|..+...|.+.|+.++|.+. +++..++.|+++.+|......+...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999999854 6775 88999999999999999876665 588899999999999988888777664

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.96  E-value=6.7e-09  Score=91.68  Aligned_cols=142  Identities=7%  Similarity=-0.109  Sum_probs=125.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCC-HHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGM-VEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~-~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      .+.+.|++++|++.|++..+   +.|+ ...|+.+-.++.+.|+ +++|...|+  ..+.| +...|+.+..+|.+.|++
T Consensus       106 ~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~  182 (382)
T 2h6f_A          106 VLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP  182 (382)
T ss_dssp             HHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCH
Confidence            56778999999999999987   5565 5677888889999997 999999999  66677 478999999999999999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH-cCchhhhh
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA-EAKWDVVN  148 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~-~g~~~~A~  148 (282)
                      ++|...|++.. ..| +..+|+.+...+.+.|++++|...|+++.+++|.+...|+.+...|.+ .|..++|.
T Consensus       183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence            99999999965 566 489999999999999999999999999999999999999999999999 66657773

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.96  E-value=1.1e-08  Score=84.54  Aligned_cols=145  Identities=11%  Similarity=-0.044  Sum_probs=119.3

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCC--C-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIE--I-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~--p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      +...|++++|++.|+++.+ ....  | +..+|..+...+...|++++|...|+  ....| +..+|..+...|.+.|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            3456899999999999987 5321  1 45678888889999999999999999  44455 578999999999999999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++....|++. ....+...+...|++++|...+
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~  167 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP-FRSLWLYLAEQKLDEKQAKEVL  167 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999865 445 588999999999999999999999999999999774 4445555666778888887644

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.94  E-value=4.6e-09  Score=87.02  Aligned_cols=147  Identities=6%  Similarity=-0.017  Sum_probs=117.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHHHcc
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVLARA   75 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~~~~   75 (282)
                      ..+.+.|++++|+..|++..+   ..|+. ..+..+...+...|++++|.+.++  ....++..    .|..+...|.+.
T Consensus        11 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A           11 DFLFKNNNYAEAIEVFNKLEA---KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHH---TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            357789999999999999887   34544 378888889999999999999999  22223333    388999999999


Q ss_pred             CChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH-HHHHHcCchhhhhcccc
Q 043686           76 GLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS-NWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        76 g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li-~~y~~~g~~~~A~~~~~  152 (282)
                      |++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|++..+..|.++..|..+. ..|.+ +++++|...+.
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~  166 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSFV  166 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            99999999999864 444 4789999999999999999999999999988998888888888 55544 47777766443


Q ss_pred             e
Q 043686          153 W  153 (282)
Q Consensus       153 ~  153 (282)
                      .
T Consensus       167 ~  167 (272)
T 3u4t_A          167 K  167 (272)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.94  E-value=1.3e-08  Score=84.13  Aligned_cols=185  Identities=15%  Similarity=0.049  Sum_probs=139.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..|...|++++|++.|++..+ .. +.+..+|..+...+...|++++|...|+  ....| +...+..+...|.+.|+++
T Consensus        51 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  128 (275)
T 1xnf_A           51 VLYDSLGLRALARNDFSQALA-IR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK  128 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHH
Confidence            467889999999999999887 32 2357889999999999999999999999  44455 5789999999999999999


Q ss_pred             HHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC
Q 043686           80 EARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN  158 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~  158 (282)
                      +|.+.|+++. ..|+...+...+..+...|++++|...+++.....|++...+. +...+...++.++|...+.......
T Consensus       129 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~  207 (275)
T 1xnf_A          129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN  207 (275)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc
Confidence            9999999975 5676555555566667789999999999999887776755554 6777777777777776443321111


Q ss_pred             ---------eEEEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686          159 ---------KVHVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP  196 (282)
Q Consensus       159 ---------~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~  196 (282)
                               ....+-..+...|+.++|.    ..|++..+.  .|+.
T Consensus       208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~----~~~~~al~~--~p~~  248 (275)
T 1xnf_A          208 TSLAEHLSETNFYLGKYYLSLGDLDSAT----ALFKLAVAN--NVHN  248 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHH----HHHHHHHTT--CCTT
T ss_pred             ccccccccHHHHHHHHHHHHcCCHHHHH----HHHHHHHhC--Cchh
Confidence                     1123334466788999998    777777654  3543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.93  E-value=2.8e-09  Score=83.42  Aligned_cols=155  Identities=13%  Similarity=0.099  Sum_probs=125.4

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGC  104 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~  104 (282)
                      ++..|..+-..+.+.|++++|.+.|+  ..+.|+ ...+..+...|.+.|++++|.+.+.... ..| +...+..+...+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            56789999999999999999999999  666774 7789999999999999999999999865 445 478888888999


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC--e--E-EEEecCCCCCCChHHHHHH
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN--K--V-HVFGTGDVSCPRSEGIFWE  179 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~--~--~-~~~i~~~~~~~~~~~a~~~  179 (282)
                      ...+++++|.+.+.+.....|.+..++..+...|.+.|++++|...+......+  .  . ..+-..+.+.|+.++|.  
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~--  161 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV--  161 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH--
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH--
Confidence            999999999999999999999999999999999999999999988554422111  0  0 22233455677777777  


Q ss_pred             HHHHHHHHH
Q 043686          180 LQSLMKKME  188 (282)
Q Consensus       180 ~~~l~~~M~  188 (282)
                        ..|++-.
T Consensus       162 --~~~~~al  168 (184)
T 3vtx_A          162 --KYFKKAL  168 (184)
T ss_dssp             --HHHHHHH
T ss_pred             --HHHHHHH
Confidence              5555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.89  E-value=5.3e-08  Score=80.53  Aligned_cols=144  Identities=13%  Similarity=0.062  Sum_probs=118.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID--PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~   77 (282)
                      ..|.+.|++++|++.|++..+ .+-.|+  ..+|..+-..+...|++++|...|+  ....| +..+|..+...|.+.|+
T Consensus        45 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  123 (272)
T 3u4t_A           45 VCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN  123 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence            467889999999999999887 543333  3358888889999999999999999  44555 46799999999999999


Q ss_pred             hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc---hhhh
Q 043686           78 FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK---WDVV  147 (282)
Q Consensus        78 ~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~---~~~A  147 (282)
                      +++|.+.|++.. ..|+ ..+|..+...+...+++++|.+.|+++.+..|++...+..+...|...|+   .++|
T Consensus       124 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A  198 (272)
T 3u4t_A          124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA  198 (272)
T ss_dssp             HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred             HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHH
Confidence            999999999965 5565 77888887344445599999999999999999888888889999988877   5555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.88  E-value=3.2e-08  Score=84.35  Aligned_cols=145  Identities=8%  Similarity=-0.028  Sum_probs=117.1

Q ss_pred             hcCCh-------HHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh-h-HHHHHHHHHHc
Q 043686            7 LHGQR-------ELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV-T-HHALMVSVLAR   74 (282)
Q Consensus         7 ~~g~~-------~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~-~-~~~~li~~~~~   74 (282)
                      +.|++       ++|+.+|++..+ . +.|+. ..|..+...+.+.|++++|..+|+  ..+.|+. . .|..+...+.+
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~-~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  146 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAIS-T-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR  146 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHT-T-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHH-H-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH
Confidence            45886       899999999875 2 45654 588899999999999999999999  6677753 3 89999999999


Q ss_pred             cCChHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           75 AGLFDEARIFIQEYH-MER-YPEVLRALLEG-CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        75 ~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      .|++++|.++|++.. ..| +...|...... +...|+.++|.++|++..+..|+++..|..++..+.+.|+.++|...+
T Consensus       147 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  226 (308)
T 2ond_A          147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF  226 (308)
T ss_dssp             HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999854 344 35556544333 223699999999999999999999999999999999999988886654


Q ss_pred             ce
Q 043686          152 SW  153 (282)
Q Consensus       152 ~~  153 (282)
                      +.
T Consensus       227 ~~  228 (308)
T 2ond_A          227 ER  228 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.88  E-value=1.5e-08  Score=92.22  Aligned_cols=242  Identities=10%  Similarity=0.000  Sum_probs=171.5

Q ss_pred             CChHHHHHHHHHhHHhCCCCCC--------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCCh
Q 043686            9 GQRELGLSLFSELEKKSSIEID--------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLF   78 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g~~p~--------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~   78 (282)
                      |++++|+.+|+++.+   ..|+        ..+|..+-..+...|++++|...|+  ....|+...|..+...|.+.|++
T Consensus       216 ~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCH
Confidence            588999999999876   4465        3356677778889999999999999  66678888899999999999999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                      ++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|+++....|.+..+|..+...|.+.|++++|...+.....
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999865 445 4889999999999999999999999999999999889999999999999999999985544321


Q ss_pred             c----CeE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccc-------hhhhhh----------hhhh-
Q 043686          157 R----NKV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYV-------DEERKW----------TQIG-  213 (282)
Q Consensus       157 ~----~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~-------~~~~~~----------~~~~-  213 (282)
                      .    ... ..+...+...|+.++|.    ..+++..+..  |+.......+       ..+.+.          +... 
T Consensus       373 ~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  446 (537)
T 3fp2_A          373 KFPTLPEVPTFFAEILTDRGDFDTAI----KQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA  446 (537)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHH----HHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHH----HHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence            1    111 23334456778899998    5555544332  3322221111       112222          3333 


Q ss_pred             hhHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686          214 HSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGE  259 (282)
Q Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~  259 (282)
                      ....+.....+.+........+...+.+.|+.+.|.+.|++.....
T Consensus       447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            1222222233333222222234566779999999999999877653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.86  E-value=4.7e-08  Score=82.62  Aligned_cols=143  Identities=7%  Similarity=-0.067  Sum_probs=112.5

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHH-HHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHAL-MVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~-li~~~~~~g~~~   79 (282)
                      .+.+.|++++|+..|++...   ..| +...+..+...+.+.|++++|...++  ....|+...... ....+.+.++.+
T Consensus       126 ~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~  202 (287)
T 3qou_A          126 QLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADT  202 (287)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccC
Confidence            46678999999999999876   445 44577778888889999999999998  555676443332 223366778888


Q ss_pred             HHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCchhhhhc
Q 043686           80 EARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS--AENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~--~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +|.+.|++.. ..|+ ...+..+...|...|++++|.+.|.++....|++  ...+..|...|...|+.++|..
T Consensus       203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~  276 (287)
T 3qou_A          203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS  276 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence            8888887754 4554 7888999999999999999999999999888876  6788999999999999888865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.85  E-value=1.5e-08  Score=96.58  Aligned_cols=156  Identities=12%  Similarity=0.041  Sum_probs=125.3

Q ss_pred             CCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHH
Q 043686           28 EID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALL  101 (282)
Q Consensus        28 ~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li  101 (282)
                      .|+ ..+|+.|-..+.+.|++++|.+.|+  ..+.|+ ...|+.|..+|.+.|++++|.+.|++.. +.|+ ..+|+.|-
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg   84 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG   84 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            354 4589999999999999999999999  667785 7899999999999999999999999854 6776 88999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecC----eE-EEEecCCCCCCChHHH
Q 043686          102 EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRN----KV-HVFGTGDVSCPRSEGI  176 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~a  176 (282)
                      ..|.+.|++++|.+.|++..+++|++...|+.|...|.+.|++++|+..+...-..+    .. ..+...+...+++++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999999999999999999999999999999998554422111    00 2223334455666665


Q ss_pred             HHHHHHH
Q 043686          177 FWELQSL  183 (282)
Q Consensus       177 ~~~~~~l  183 (282)
                      .+..+++
T Consensus       165 ~~~~~ka  171 (723)
T 4gyw_A          165 DERMKKL  171 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5444333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.85  E-value=3.5e-08  Score=81.70  Aligned_cols=146  Identities=7%  Similarity=-0.096  Sum_probs=113.0

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID----PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLA   73 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~   73 (282)
                      .+.+.|++++|++.|++..+ .  .|+    ...+..+-.++.+.|++++|...|+  ....|+    ...+..+..+|.
T Consensus        24 ~~~~~g~~~~A~~~~~~~l~-~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~  100 (261)
T 3qky_A           24 EFYNQGKYDRAIEYFKAVFT-Y--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY  100 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHGG-G--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH-h--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence            56789999999999999887 3  354    4677778888999999999999999  334342    446777888888


Q ss_pred             c--------cCChHHHHHHHHhcC-CCCC-HHHH-----------------HHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           74 R--------AGLFDEARIFIQEYH-MERY-PEVL-----------------RALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        74 ~--------~g~~~~A~~l~~~m~-~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      +        .|++++|.+.|++.. ..|+ ...+                 ..+...|.+.|++++|...|++.....|+
T Consensus       101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          101 KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            8        999999999999864 3454 3333                 45677899999999999999999998887


Q ss_pred             C---hhHHHHHHHHHHHc----------Cchhhhhcccc
Q 043686          127 S---AENYIMLSNWYAAE----------AKWDVVNQAYS  152 (282)
Q Consensus       127 ~---~~~~~~Li~~y~~~----------g~~~~A~~~~~  152 (282)
                      +   ...+..+..+|.+.          |++++|...+.
T Consensus       181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~  219 (261)
T 3qky_A          181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE  219 (261)
T ss_dssp             STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence            4   34677888888877          55555655443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.84  E-value=8.1e-09  Score=86.84  Aligned_cols=150  Identities=13%  Similarity=0.142  Sum_probs=121.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhC-------CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCC-ChhH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKS-------SIEIDPLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSP-KVTH   64 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~-------g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p-~~~~   64 (282)
                      ..|...|++++|+.+|++..+ .       .-.....++..+...+...|++++|...++  .        +-.| ...+
T Consensus        35 ~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  113 (311)
T 3nf1_A           35 IQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAAT  113 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            467889999999999999876 3       222334577888889999999999999998  1        2234 3668


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCC
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL--------KPL  126 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~p~  126 (282)
                      +..+...|...|++++|.+.|++.. .        .|+ ..+|+.+...|...|++++|.+.|+++...        .|.
T Consensus       114 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  193 (311)
T 3nf1_A          114 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN  193 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence            8899999999999999999998853 1        233 667899999999999999999999999865        554


Q ss_pred             ChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          127 SAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       127 ~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ...++..+...|.+.|++++|...+..
T Consensus       194 ~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          194 VAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            556788999999999999999775443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.83  E-value=1e-07  Score=73.46  Aligned_cols=118  Identities=9%  Similarity=0.030  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRI  106 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~  106 (282)
                      ..|..+...+...|++++|...++  ....| +..++..+...|.+.|++++|.+.+++.. ..| +..+|..+...|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            456677778889999999999999  44445 57789999999999999999999999864 344 58899999999999


Q ss_pred             cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .|++++|.+.|+++....|.++..+..+...|.+.|++++|..
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            9999999999999999999888999999999999998887754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.83  E-value=3.6e-08  Score=91.25  Aligned_cols=139  Identities=14%  Similarity=0.054  Sum_probs=105.3

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      .|++++|++.|++..+   ..|+ ...|..+-..+.+.|++++|.+.++  ....|+ ...|..+...|.+.|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            5788999999999876   4454 6678888888999999999999999  556664 7788899999999999999999


Q ss_pred             HHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---Cchhhhhc
Q 043686           84 FIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE---AKWDVVNQ  149 (282)
Q Consensus        84 l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~---g~~~~A~~  149 (282)
                      .|++.. ..|+ ...|..+...|.+.|++++|.+.|++..+..|++...+..+...|...   |+.++|..
T Consensus        79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            999854 4554 789999999999999999999999999999998888999999999999   89888887

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.81  E-value=1.6e-07  Score=67.49  Aligned_cols=112  Identities=16%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC-CCHHHHHHHHHHHH
Q 043686           31 PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME-RYPEVLRALLEGCR  105 (282)
Q Consensus        31 ~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~  105 (282)
                      ..++..+...+...|++++|.+.++  ....| +..++..+...|.+.|++++|...|+++. .. .+..+|..+...|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            5678888889999999999999998  33344 57788999999999999999999999865 33 45889999999999


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686          106 IHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus       106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      +.|++++|.+.|+++....|+++..+..+...+.+.|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999988888887777776543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.80  E-value=2e-08  Score=83.02  Aligned_cols=120  Identities=8%  Similarity=0.029  Sum_probs=97.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhC------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCC-ChhH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKS------SIEID-PLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSP-KVTH   64 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~------g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p-~~~~   64 (282)
                      ..|...|++++|+..|.+..+ .      +-.|+ ..++..+-..+...|++++|.+.|.  .        .-.| ...+
T Consensus        51 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  129 (283)
T 3edt_B           51 LVYRDQNKYKEAAHLLNDALA-IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ  129 (283)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHH-HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence            457789999999999999876 3      22233 4578888889999999999999998  1        1134 3678


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL  123 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  123 (282)
                      +..+...|...|++++|.+.|++.. .        .|+ ..+|..+...|.+.|++++|.+.|++....
T Consensus       130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8999999999999999999998853 2        343 678999999999999999999999998743

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.79  E-value=9.2e-09  Score=86.49  Aligned_cols=119  Identities=10%  Similarity=0.074  Sum_probs=96.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhC------CCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCCC-hhH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKS------SIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSPK-VTH   64 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~------g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p~-~~~   64 (282)
                      ..|...|++++|+..|++... .      +-.| ...++..+...+...|++++|.+.++  .        +-.|+ ..+
T Consensus        77 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  155 (311)
T 3nf1_A           77 LVYRDQNKYKDAANLLNDALA-IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ  155 (311)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            467789999999999999876 3      2223 34578888889999999999999998  1        33343 567


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE  122 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  122 (282)
                      +..+...|.+.|++++|.+.|++.. .        .|+ ..+|..+...|.+.|++++|.+.|+++..
T Consensus       156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8899999999999999999998853 1        333 56889999999999999999999999884

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.77  E-value=4.3e-08  Score=74.94  Aligned_cols=116  Identities=10%  Similarity=0.051  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhhccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCC
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFNRIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQ  109 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~  109 (282)
                      ....+.+.+...+-++++     ..+.|+ ...+..+...|.+.|++++|.+.|++.. ..|+ ...|..+-.+|.+.|+
T Consensus        11 ~~~~l~~~~~~~~~l~~a-----l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~   85 (151)
T 3gyz_A           11 ISTAVIDAINSGATLKDI-----NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQ   85 (151)
T ss_dssp             HHHHHHHHHHTSCCTGGG-----CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCCHHHH-----hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc
Confidence            345555555555554433     356774 6678888889999999999999998865 5664 8889999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          110 VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       110 ~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +++|.+.|++..++.|+++..|..+..+|.+.|++++|...+..
T Consensus        86 ~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~  129 (151)
T 3gyz_A           86 FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL  129 (151)
T ss_dssp             HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999989999999999999999988775544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.77  E-value=5.4e-08  Score=75.83  Aligned_cols=146  Identities=8%  Similarity=-0.031  Sum_probs=111.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHH-HHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSV-LARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~-~~~~g~~   78 (282)
                      ..+.+.|++++|+..|++..+   ..| +...+..+-..+.+.|++++|...++  ....|+...+..+... +.+.+..
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence            357789999999999999765   335 45677888889999999999999999  4555543333222211 2232334


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCchhhhhccc
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS--AENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~--~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      .+|.+.|++.. ..|+ ...|..+...+.+.|++++|...|+++.+..|+.  ...+..|...|...|+.++|...+
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            45788887754 5665 8899999999999999999999999999998854  458999999999999999887643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.77  E-value=7.1e-08  Score=82.16  Aligned_cols=146  Identities=11%  Similarity=-0.010  Sum_probs=116.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCH-H-HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHH-HccC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDP-L-TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVL-ARAG   76 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~-ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~-~~~g   76 (282)
                      ..+.+.|++++|.++|++..+   +.|+. . .|..+...+.+.|++++|..+|+  ....| +...|....... ...|
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~  183 (308)
T 2ond_A          107 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  183 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred             HHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            356678999999999999987   56653 3 79999999999999999999999  44444 344555444332 2369


Q ss_pred             ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCC-ChhHHHHHHHHHHHcCchhhhhcc
Q 043686           77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCEL---KPL-SAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~p~-~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      +.++|.++|++.. ..| +...|..++..+.+.|++++|..+|++....   .|+ ....|..++..+.+.|+.++|...
T Consensus       184 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~  263 (308)
T 2ond_A          184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999864 345 4889999999999999999999999999974   553 567899999999999998887553


Q ss_pred             c
Q 043686          151 Y  151 (282)
Q Consensus       151 ~  151 (282)
                      +
T Consensus       264 ~  264 (308)
T 2ond_A          264 E  264 (308)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.76  E-value=2.1e-08  Score=76.38  Aligned_cols=109  Identities=13%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             HhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686           41 CSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      +...|++++|.+.+.  ....|+ ...+-.+-..|.+.|++++|.+.|++.. +.|+ ..+|..+...|.+.|++++|..
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence            445688999999998  555564 5677789999999999999999999864 6675 8899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686          116 VIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .|++..+++|+++.+|..+...|.+.|+.++|.+
T Consensus        87 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           87 CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            9999999999999999999999999999887644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.75  E-value=2.5e-07  Score=73.73  Aligned_cols=122  Identities=7%  Similarity=-0.040  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQ  109 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~  109 (282)
                      ..+..+-..+...|++++|.+.|+..+.|+...|..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|+
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence            3455566678889999999999996678889999999999999999999999999854 445 58899999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHcCchhhhhcccce
Q 043686          110 VKTGKRVIDQLCELKPLSA----------------ENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       110 ~~~A~~~~~~m~~~~p~~~----------------~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +++|.+.|++..+..|.+.                ..+..+...|.+.|++++|...+..
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999998877665                7889999999999999999886554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.73  E-value=2.4e-08  Score=82.55  Aligned_cols=147  Identities=13%  Similarity=0.094  Sum_probs=115.1

Q ss_pred             hhhcCChHHHHHHHHHhHHh------CCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--c--------cCCCC-hhHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKK------SSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--R--------IRSPK-VTHHAL   67 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~------~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~--------g~~p~-~~~~~~   67 (282)
                      ....|++++|+++|++..+.      ..-.....++..+-..+...|++++|...++  .        +-.|+ ..++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34567888888888876541      0112235678888889999999999999998  1        22343 668899


Q ss_pred             HHHHHHccCChHHHHHHHHhcC-C--------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCCChh
Q 043686           68 MVSVLARAGLFDEARIFIQEYH-M--------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL--------KPLSAE  129 (282)
Q Consensus        68 li~~~~~~g~~~~A~~l~~~m~-~--------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~p~~~~  129 (282)
                      +...|...|++++|.+.|++.. .        .|+ ..+|..+...|...|++++|.+.|+++...        .|....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9999999999999999998853 1        243 678999999999999999999999999865        555567


Q ss_pred             HHHHHHHHHHHcCchhhhhccc
Q 043686          130 NYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       130 ~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ++..+...|.+.|++++|...+
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            8889999999999999986644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.73  E-value=3.4e-07  Score=73.98  Aligned_cols=124  Identities=8%  Similarity=-0.023  Sum_probs=102.7

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCC--CChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHH
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRS--PKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLE  102 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~  102 (282)
                      .|+..+...-..+.+.|++++|.+.|+  ..+.  ++...+..+..+|.+.|++++|.+.|++.. ..|+ ..+|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            456778888888999999999999999  3333  677777779999999999999999999854 6776 778999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCchhhhhcccc
Q 043686          103 GCRIHVQVKTGKRVIDQLCELKPLSA-------ENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       103 ~~~~~g~~~~A~~~~~~m~~~~p~~~-------~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      .|.+.|++++|.+.|++..+..|+++       ..|..+-..|.+.|++++|...+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  141 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK  141 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence            99999999999999999999999887       446666667777777777655443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.72  E-value=1.6e-07  Score=69.27  Aligned_cols=110  Identities=11%  Similarity=-0.015  Sum_probs=89.9

Q ss_pred             CCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHH
Q 043686           27 IEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRAL  100 (282)
Q Consensus        27 ~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~l  100 (282)
                      +-|+. ..+...-..+.+.|++++|.+.|+  ..+.| +...|..+..+|.+.|++++|.+.|++.. +.|+ ..+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            34543 356677778889999999999998  55556 47788899999999999999999998854 5555 8889999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686          101 LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus       101 i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      ..+|...|++++|.+.|++..+++|++...+..|-.
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            999999999999999999999999988777766544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.72  E-value=3.5e-07  Score=66.16  Aligned_cols=115  Identities=8%  Similarity=-0.057  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGC  104 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~  104 (282)
                      +...+..+...+...|++++|...|+  ....| +...+..+...|.+.|++++|.+.+++.. ..| +..+|..+...|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            44577778888999999999999999  33445 57788999999999999999999999854 445 488999999999


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      .+.|++++|.+.|++.....|.+...+..+...|.+.|+.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998888999999999888875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.71  E-value=7.4e-08  Score=84.99  Aligned_cols=142  Identities=6%  Similarity=-0.065  Sum_probs=121.1

Q ss_pred             hhhhcCC-hHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            4 GYSLHGQ-RELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         4 ~~~~~g~-~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      .|.+.|+ +++|+..|++..+   +.| +...|+.+-.++.+.|++++|...|+  ..+.| +...|..+..+|.+.|++
T Consensus       140 ~l~~~g~d~~eAl~~~~~al~---l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          140 LLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcccCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence            4667896 9999999999987   456 45688888889999999999999999  66677 578999999999999999


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHh-cCChhHH-----HHHHHHHHhcCCCChhHHHHHHHHHHHcC--chhhhh
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRI-HVQVKTG-----KRVIDQLCELKPLSAENYIMLSNWYAAEA--KWDVVN  148 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~p~~~~~~~~Li~~y~~~g--~~~~A~  148 (282)
                      ++|.+.|+++. ..|+ ...|+.+...|.+ .|..++|     .+.|++...+.|++...|+.+...|.+.|  +.++|.
T Consensus       217 ~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~  296 (382)
T 2h6f_A          217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL  296 (382)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence            99999999965 5665 8899999999999 6776888     58899999999999999999999988876  344443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.70  E-value=1.8e-09  Score=91.37  Aligned_cols=251  Identities=10%  Similarity=-0.049  Sum_probs=162.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-----HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-----PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMV   69 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li   69 (282)
                      .+.+.|++++|+..|++..+ .  .|+     ...+..+...+...|++++|.+.++        .+-.|. ..++..+.
T Consensus        14 ~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHh-h--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            56789999999999999987 4  344     3577888889999999999999998        222332 56788999


Q ss_pred             HHHHccCChHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH----MERY----PEVLRALLEGCRIHVQ--------------------VKTGKRVIDQLC  121 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~----~~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~  121 (282)
                      ..|...|++++|.+.|++..    -.++    ..+|..+...|...|+                    +++|.+.+++..
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999998843    1223    4588899999999999                    999999999876


Q ss_pred             hc------CCCChhHHHHHHHHHHHcCchhhhhcccceee----ecC-------eEEEEecCCCCCCChHHHHHHHHHHH
Q 043686          122 EL------KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE----FRN-------KVHVFGTGDVSCPRSEGIFWELQSLM  184 (282)
Q Consensus       122 ~~------~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~  184 (282)
                      .+      .|....++..+...|...|++++|...+....    ..+       ....+...+...|+.++|...+++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            32      22234578889999999999999998443321    111       11223333556788888886665555


Q ss_pred             HHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCCC------CeEEEeeccccccchHHHHHHHHHhh
Q 043686          185 KKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQVG------ATIHVTKNLRMRHICHDFAKAISKMV  256 (282)
Q Consensus       185 ~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~a~~~~~~m~  256 (282)
                      +.....+..+.. .++..+...+.+.+... ....+.....+.+....      ....+...+.+.|+.+.|.+++++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            555444433222 12222222223333332 11111111111111100      11123455668899999999998775


Q ss_pred             c
Q 043686          257 E  257 (282)
Q Consensus       257 ~  257 (282)
                      .
T Consensus       331 ~  331 (338)
T 3ro2_A          331 E  331 (338)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.70  E-value=4e-07  Score=66.31  Aligned_cols=116  Identities=11%  Similarity=0.004  Sum_probs=99.0

Q ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHH
Q 043686           28 EIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLE  102 (282)
Q Consensus        28 ~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~  102 (282)
                      ..+...+..+...+.+.|++++|...|+  ....| +...+..+...|.+.|++++|.+.|++.. ..| +..+|..+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            3455678888889999999999999999  45556 57888999999999999999999999854 445 5889999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686          103 GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus       103 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      .|.+.|++++|.+.|++..+..|.+...+..+...|.+.|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999887888888888877653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.69  E-value=1.1e-09  Score=96.44  Aligned_cols=251  Identities=10%  Similarity=-0.015  Sum_probs=164.1

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP-----LTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMV   69 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-----~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li   69 (282)
                      .+.+.|++++|+..|++..+ .  .|+.     ..|..+-..+...|++++|.+.++        .+-.| ...++..+.
T Consensus        57 ~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           57 RLCNAGDCRAGVAFFQAAIQ-A--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHH-h--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            56788999999999999988 4  4542     467788888999999999999998        22234 356888999


Q ss_pred             HHHHccCChHHHHHHHHhcC-C------CCC-HHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHhc-
Q 043686           70 SVLARAGLFDEARIFIQEYH-M------ERY-PEVLRALLEGCRIHVQ-----------------VKTGKRVIDQLCEL-  123 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~------~p~-~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~-  123 (282)
                      ..|...|++++|.+.|++.. .      .|+ ..+|+.+...|...|+                 +++|.+.+++...+ 
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999998853 1      222 5688999999999999                 99999999987643 


Q ss_pred             -----CCCChhHHHHHHHHHHHcCchhhhhcccceeee----cC-------eEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686          124 -----KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF----RN-------KVHVFGTGDVSCPRSEGIFWELQSLMKKM  187 (282)
Q Consensus       124 -----~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~----~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~~~M  187 (282)
                           .|....++..+...|...|++++|...+.....    .+       ....+-..+...|+.++|...+++.+...
T Consensus       214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence                 122345788899999999999999984433211    11       11233445677889999986666665555


Q ss_pred             HhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCCC------CeEEEeeccccccchHHHHHHHHHhhc
Q 043686          188 EGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQVG------ATIHVTKNLRMRHICHDFAKAISKMVE  257 (282)
Q Consensus       188 ~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~a~~~~~~m~~  257 (282)
                      .+.+-.+.. .++..+...+.+.+... ....+.....+.+....      ....+...+...|+.+.|.+++++...
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            544332221 22222222233333332 11111111111111000      111234556688999999888887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.68  E-value=2.9e-07  Score=74.62  Aligned_cols=149  Identities=6%  Similarity=-0.112  Sum_probs=111.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCC-CCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChh----HHHHHHHHHHc
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSS-IEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVT----HHALMVSVLAR   74 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g-~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~----~~~~li~~~~~   74 (282)
                      ..+.+.|++++|+..|+++.+ .. -.|. ...+..+..++.+.|++++|...|+  ....|+..    .+-.+..+|.+
T Consensus        12 ~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           12 QQKLQDGNWRQAITQLEALDN-RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH-HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence            357789999999999999987 32 1222 3567778889999999999999999  44455432    34444444443


Q ss_pred             ------------------cCChHHHHHHHHhcC-CCCC-HHHH-----------------HHHHHHHHhcCChhHHHHHH
Q 043686           75 ------------------AGLFDEARIFIQEYH-MERY-PEVL-----------------RALLEGCRIHVQVKTGKRVI  117 (282)
Q Consensus        75 ------------------~g~~~~A~~l~~~m~-~~p~-~~~~-----------------~~li~~~~~~g~~~~A~~~~  117 (282)
                                        .|+.++|.+.|++.. ..|+ ..++                 -.+...|.+.|++++|...|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  170 (225)
T 2yhc_A           91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRV  170 (225)
T ss_dssp             HHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence                              678999999999864 4565 3333                 23455789999999999999


Q ss_pred             HHHHhcCCCCh---hHHHHHHHHHHHcCchhhhhcccc
Q 043686          118 DQLCELKPLSA---ENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       118 ~~m~~~~p~~~---~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +++.+..|+++   ..+..+..+|.+.|+.++|...+.
T Consensus       171 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~  208 (225)
T 2yhc_A          171 EGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK  208 (225)
T ss_dssp             HHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99999999764   457888999999999888865443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.66  E-value=1e-07  Score=80.61  Aligned_cols=151  Identities=8%  Similarity=-0.055  Sum_probs=116.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC------C-hhHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP------K-VTHHALMV   69 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p------~-~~~~~~li   69 (282)
                      ..|...|++++|++.|.+..+-   .|-.++ ..+|+.+-.+|.+.|++++|...++  ..+.|      . ..+++.+.
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3567789999999999886540   122222 4688889999999999999999998  11111      1 45788999


Q ss_pred             HHHHcc-CChHHHHHHHHhcC-CCC---C----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh-------HHHH
Q 043686           70 SVLARA-GLFDEARIFIQEYH-MER---Y----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE-------NYIM  133 (282)
Q Consensus        70 ~~~~~~-g~~~~A~~l~~~m~-~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-------~~~~  133 (282)
                      ..|.+. |++++|.+.|++.. +.|   +    ..+|+.+...|.+.|++++|...|++.....|.+..       +|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            999996 99999999998843 222   1    457889999999999999999999999988775533       4677


Q ss_pred             HHHHHHHcCchhhhhcccce
Q 043686          134 LSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +...|...|++++|...+..
T Consensus       205 lg~~~~~~g~~~~A~~~~~~  224 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQE  224 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHG
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            78889999999999875544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.66  E-value=6.5e-09  Score=90.82  Aligned_cols=251  Identities=10%  Similarity=-0.046  Sum_probs=162.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-----HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-----PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMV   69 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li   69 (282)
                      .+.+.|++++|+..|++..+ .  .|+     ...|..+-..+...|++++|...++        .+-.|. ..++..+.
T Consensus        18 ~~~~~g~~~~A~~~~~~al~-~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           18 RLCKSGDCRAGVSFFEAAVQ-V--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-H--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHh-c--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            56788999999999999987 4  344     3567788889999999999999988        222333 56788899


Q ss_pred             HHHHccCChHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH-M---ERY----PEVLRALLEGCRIHVQ--------------------VKTGKRVIDQLC  121 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~---~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~  121 (282)
                      ..|...|++++|.+.+++.. .   .++    ..+|..+...|...|+                    +++|.+.+++..
T Consensus        95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  174 (406)
T 3sf4_A           95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL  174 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999998753 1   122    5588899999999999                    999999999887


Q ss_pred             hc------CCCChhHHHHHHHHHHHcCchhhhhcccceee----ecC-------eEEEEecCCCCCCChHHHHHHHHHHH
Q 043686          122 EL------KPLSAENYIMLSNWYAAEAKWDVVNQAYSWIE----FRN-------KVHVFGTGDVSCPRSEGIFWELQSLM  184 (282)
Q Consensus       122 ~~------~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~  184 (282)
                      .+      .|....++..+...|...|++++|...+....    ..+       ....+-..+...|+.++|...+++.+
T Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            43      22234578889999999999999998443311    111       11223334567888999986655555


Q ss_pred             HHHHhCCCccCC-Ccccccchhhhhhhhhh-hhHHHHHHhhhccCCCC------CeEEEeeccccccchHHHHHHHHHhh
Q 043686          185 KKMEGDSLRPKP-DFSLHYVDEERKWTQIG-HSEILALSFGLISTQVG------ATIHVTKNLRMRHICHDFAKAISKMV  256 (282)
Q Consensus       185 ~~M~~~g~~pd~-~t~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~a~~~~~~m~  256 (282)
                      ......+-.+.. .++..+...+.+.+... ....+.....+.+....      ....+...+...|+.+.|.+++++..
T Consensus       255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555444432221 22222233333333332 11111111222111110      11113445568899999988888754


Q ss_pred             c
Q 043686          257 E  257 (282)
Q Consensus       257 ~  257 (282)
                      .
T Consensus       335 ~  335 (406)
T 3sf4_A          335 E  335 (406)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.65  E-value=3.2e-07  Score=73.05  Aligned_cols=119  Identities=13%  Similarity=-0.045  Sum_probs=103.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~   80 (282)
                      .+.+.|++++|++.|++..     .|+...|..+-..+.+.|++++|...|+  ..+.| +...|..+...|.+.|++++
T Consensus        15 ~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~   89 (213)
T 1hh8_A           15 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   89 (213)
T ss_dssp             HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence            5678999999999998764     4788999999999999999999999999  44445 57789999999999999999


Q ss_pred             HHHHHHhcC-CCCC-----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           81 ARIFIQEYH-MERY-----------------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        81 A~~l~~~m~-~~p~-----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      |.+.|++.. ..|+                 ..+|..+...|.+.|++++|.+.|++..+..|.+
T Consensus        90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            999999854 3332                 3789999999999999999999999999999954

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.63  E-value=1.7e-07  Score=69.13  Aligned_cols=96  Identities=13%  Similarity=0.077  Sum_probs=85.2

Q ss_pred             CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686           58 RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus        58 ~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      +.|+ ...+......|.+.|++++|.+.|++.. ..| +..+|..+..+|.+.|++++|.+.|++..+++|+++..|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            5565 5678889999999999999999999854 556 489999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCchhhhhcccce
Q 043686          135 SNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       135 i~~y~~~g~~~~A~~~~~~  153 (282)
                      ...|...|++++|...+..
T Consensus        88 g~~~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYED  106 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHH
Confidence            9999999999999775543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.62  E-value=1e-07  Score=90.35  Aligned_cols=148  Identities=10%  Similarity=-0.080  Sum_probs=126.7

Q ss_pred             hhcCChHHHHHHHHHhHH-----hCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC
Q 043686            6 SLHGQRELGLSLFSELEK-----KSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG   76 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~-----~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g   76 (282)
                      ...|++++|++.|++..+     .....|+ ...+..+-.++.+.|++++|.+.|+  ....| +...|..+..+|.+.|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            468999999999999871     0013344 4677788889999999999999999  55566 4778999999999999


Q ss_pred             ChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee
Q 043686           77 LFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      ++++|.+.|++.. ..|+ ...|..+-..|.+.|++++ .+.|++..+++|+++..|..+..+|.+.|++++|...++..
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            9999999999854 5665 7899999999999999999 99999999999999999999999999999999999866554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.61  E-value=1e-06  Score=66.87  Aligned_cols=119  Identities=8%  Similarity=-0.000  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHh
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRI  106 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~  106 (282)
                      ..+..+-..+...|++++|...|+  ....| +..++..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            456667778888999999999999  44445 57788999999999999999999998854 445 58889999999999


Q ss_pred             cCChhHHHHHHHHHHhcCCCChhHHHHHHHH--HHHcCchhhhhcc
Q 043686          107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNW--YAAEAKWDVVNQA  150 (282)
Q Consensus       107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~--y~~~g~~~~A~~~  150 (282)
                      .|++++|.+.|++.....|.+...+..+..+  +.+.|++++|...
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~  139 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  139 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999887777544444  7777888887553

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.57  E-value=1.4e-06  Score=72.39  Aligned_cols=177  Identities=8%  Similarity=-0.015  Sum_probs=122.0

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhh--ccCCCChhHHHHHHHHHHc---
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFN--RIRSPKVTHHALMVSVLAR---   74 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~---   74 (282)
                      .|.+.|++++|++.|++..+ .   -+...+..+-..+..    .|++++|...|+  ... .+...+..+...|.+   
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~   89 (273)
T 1ouv_A           15 KSYKEKDFTQAKKYFEKACD-L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-NYSNGCHLLGNLYYSGQG   89 (273)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhCCCC
Confidence            45677888888888888776 3   244566777777777    888888888888  111 156777788888888   


Q ss_pred             -cCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchh
Q 043686           75 -AGLFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWD  145 (282)
Q Consensus        75 -~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~  145 (282)
                       .+++++|.+.|++..-..+..++..|-..|.+    .+++++|.+.|++..+..+  +.++..+...|..    .++.+
T Consensus        90 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~~~~~~~~~~~  167 (273)
T 1ouv_A           90 VSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND--GDGCTILGSLYDAGRGTPKDLK  167 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHcCCCCCCCHH
Confidence             88888888888875412367788888888888    8888888888888876653  4677778888887    78888


Q ss_pred             hhhcccceeeecCeE-------EEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 043686          146 VVNQAYSWIEFRNKV-------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDS  191 (282)
Q Consensus       146 ~A~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g  191 (282)
                      +|...+...-..+..       ..+..+....++.++|.    ..|++..+.+
T Consensus       168 ~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~----~~~~~a~~~~  216 (273)
T 1ouv_A          168 KALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL----ARYSKACELE  216 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH----HHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHH----HHHHHHHhCC
Confidence            888744432222211       12223333367777777    5555555444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.55  E-value=3.5e-07  Score=79.09  Aligned_cols=137  Identities=8%  Similarity=-0.033  Sum_probs=113.0

Q ss_pred             ChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----------------hhHHHHHHH
Q 043686           10 QRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----------------VTHHALMVS   70 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----------------~~~~~~li~   70 (282)
                      ++++|++.|+....   ..| +...+..+-..+.+.|++++|...|+  ..+.|+                ...|..+..
T Consensus       128 ~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          128 SFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34455555544333   224 34577788888999999999999999  455555                378999999


Q ss_pred             HHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686           71 VLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN  148 (282)
Q Consensus        71 ~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~  148 (282)
                      +|.+.|++++|.+.|++.. ..| +..+|..+..+|.+.|++++|.+.|++..++.|++...+..+...|.+.|+.++|.
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864 556 58899999999999999999999999999999999999999999999999988884


Q ss_pred             c
Q 043686          149 Q  149 (282)
Q Consensus       149 ~  149 (282)
                      +
T Consensus       285 ~  285 (336)
T 1p5q_A          285 K  285 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.54  E-value=6.5e-07  Score=71.72  Aligned_cols=78  Identities=21%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             HHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           66 ALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        66 ~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      +.+...|.+.|++++|.+.|++.. ..|+ ..+|..+...|...|++++|.+.|++..+++|+++.+|..+...|...|+
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            348888888999999999998854 5564 78888898899999999999999999999999888888888888876654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.54  E-value=5.1e-07  Score=69.94  Aligned_cols=134  Identities=10%  Similarity=0.077  Sum_probs=102.7

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHH-HHccCCh-
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSV-LARAGLF-   78 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~-~~~~g~~-   78 (282)
                      .+...|++++|+..|++... .. +.+...|..+-..+...|++++|...|+  ..+.| +...+..+... |.+.|++ 
T Consensus        19 ~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIR-AN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CCC-----CCCCHHHHHHHH-HC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhccCHHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence            45678999999999999776 32 2356788888889999999999999999  44445 56778888888 7889998 


Q ss_pred             -HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           79 -DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        79 -~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                       ++|.+.|++.. ..|+ ...|..+...|.+.|++++|...|++.....|++. ....++....+
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~i~~  160 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI-NRTQLVESINM  160 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHH
Confidence             99999999864 4554 78899999999999999999999999999999773 33344444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.54  E-value=8e-07  Score=81.36  Aligned_cols=144  Identities=8%  Similarity=-0.028  Sum_probs=113.5

Q ss_pred             cCChH-------HHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCCh--hHHHHHHHHHHcc
Q 043686            8 HGQRE-------LGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKV--THHALMVSVLARA   75 (282)
Q Consensus         8 ~g~~~-------~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~--~~~~~li~~~~~~   75 (282)
                      .|+++       +|+.+|++..+  .+.| +...|..+...+.+.|++++|..+|+  ..+.|+.  ..|..++..+.+.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  369 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA  369 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence            68887       99999999763  2345 46788889999999999999999999  5667753  5899999999999


Q ss_pred             CChHHHHHHHHhcC-CCCC-HHHHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           76 GLFDEARIFIQEYH-MERY-PEVLRALLE-GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        76 g~~~~A~~l~~~m~-~~p~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      |++++|.++|++.. ..|+ ...|-.... .+...|+.++|..+|++..+..|+++..|..+++.+.+.|+.++|...++
T Consensus       370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~  449 (530)
T 2ooe_A          370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  449 (530)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence            99999999999853 3343 233322221 24468999999999999999999999999999999988888777755443


Q ss_pred             e
Q 043686          153 W  153 (282)
Q Consensus       153 ~  153 (282)
                      .
T Consensus       450 ~  450 (530)
T 2ooe_A          450 R  450 (530)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.52  E-value=2.5e-07  Score=70.13  Aligned_cols=88  Identities=6%  Similarity=-0.016  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      ...+..+...+.+.|++++|...|++.. ..| +...|..+-.+|.+.|++++|...|++...+.|+++..+..+..+|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            3445555566666666666666666543 333 35566666666666666666666666666666666666666666666


Q ss_pred             HcCchhhhhc
Q 043686          140 AEAKWDVVNQ  149 (282)
Q Consensus       140 ~~g~~~~A~~  149 (282)
                      ..|++++|..
T Consensus       101 ~~g~~~~A~~  110 (148)
T 2vgx_A          101 QXGELAEAES  110 (148)
T ss_dssp             HTTCHHHHHH
T ss_pred             HcCCHHHHHH
Confidence            6666666644

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.51  E-value=1.9e-06  Score=78.90  Aligned_cols=144  Identities=11%  Similarity=0.002  Sum_probs=111.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCH--HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHH-HHccC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDP--LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSV-LARAG   76 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~--~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~-~~~~g   76 (282)
                      ..+.+.|++++|..+|++..+   +.|+.  ..|......+.+.|++++|+.+|+  ....|+ ...|-..... |...|
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~  405 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK  405 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence            346678999999999999988   56753  478888888889999999999999  444443 3333322222 34689


Q ss_pred             ChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh----HHHHHHHHHHHcCchhhhhc
Q 043686           77 LFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE----NYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~----~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +.++|.++|++.. ..| +...|..++..+.+.|+.++|..+|++.....|.++.    .|...+....+.|+.+.+..
T Consensus       406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~  484 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  484 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999853 445 4889999999999999999999999999987665443    77777888777788776643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=3.2e-06  Score=62.66  Aligned_cols=110  Identities=8%  Similarity=-0.065  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHH
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRAL  100 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~l  100 (282)
                      .+...+..+-..+.+.|++++|.+.|+  ....|+    ...|..+...|.+.|++++|.+.|++.. ..| +...|..+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            356778888889999999999999999  666776    6788899999999999999999998854 455 58889999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686          101 LEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus       101 i~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      ...|.+.|++++|.+.|++.....|++...+..+....
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            99999999999999999999999998876666555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.49  E-value=2.9e-06  Score=60.04  Aligned_cols=108  Identities=9%  Similarity=0.042  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHH
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGC  104 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~  104 (282)
                      +...+..+...+...|++++|...|+  ....| +...+..+...|.+.|++++|.+.+++.. ..| +...|..+...|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34567777778888999999999998  34445 57788888899999999999999998854 445 478888899999


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      .+.|++++|.+.|++..+..|+++..+..+...
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            999999999999999999999876666655443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.49  E-value=1.3e-06  Score=62.51  Aligned_cols=91  Identities=19%  Similarity=0.192  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      ...+..+...|.+.|++++|.+.|+++. ..| +..+|..+...|.+.|++++|...|+++....|.++.++..+...|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            5678889999999999999999999865 344 58899999999999999999999999999999988899999999999


Q ss_pred             HcCchhhhhcccc
Q 043686          140 AEAKWDVVNQAYS  152 (282)
Q Consensus       140 ~~g~~~~A~~~~~  152 (282)
                      +.|++++|...+.
T Consensus        89 ~~~~~~~A~~~~~  101 (125)
T 1na0_A           89 KQGDYDEAIEYYQ  101 (125)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HhcCHHHHHHHHH
Confidence            9999888866443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.48  E-value=3.3e-06  Score=71.12  Aligned_cols=148  Identities=8%  Similarity=-0.034  Sum_probs=110.6

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHhcCCCHHHHHHHhh--cc---CCCC----hhHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACSTAGMVEEGWLCFN--RI---RSPK----VTHHALM   68 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~~~g~~~~a~~l~~--~g---~~p~----~~~~~~l   68 (282)
                      +..+...|++++|.+++++..+.....|+..    .|..+...+...|++++|...|+  ..   -.++    ..+|+.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            3457789999999999999876122334422    33446667778889999999998  11   1223    2368999


Q ss_pred             HHHHHccCChHHHHHHHHhcC-----C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CChhHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH-----M---ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP------LSAENYIM  133 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-----~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p------~~~~~~~~  133 (282)
                      ...|.+.|++++|.+.|++..     .   .|. ..+|+.+...|.+.|++++|.+.+++...+.|      .-..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999998853     2   122 45889999999999999999999999885322      12567888


Q ss_pred             HHHHHHHcCc-hhhhhc
Q 043686          134 LSNWYAAEAK-WDVVNQ  149 (282)
Q Consensus       134 Li~~y~~~g~-~~~A~~  149 (282)
                      +...|.+.|+ .++|..
T Consensus       242 lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHH
Confidence            9999999995 588854

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.48  E-value=3.6e-07  Score=69.25  Aligned_cols=113  Identities=13%  Similarity=0.012  Sum_probs=91.3

Q ss_pred             HHHHhHHhCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686           17 LFSELEKKSSIEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME   91 (282)
Q Consensus        17 lf~~m~~~~g~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~   91 (282)
                      .|++...   +.|+. ..+..+-..+.+.|++++|...|+  ....| +...|..+..+|.+.|++++|.+.|++.. ..
T Consensus         9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             SHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3445443   44543 456667778899999999999999  55666 57788899999999999999999999864 55


Q ss_pred             CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           92 RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        92 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      |+ ..+|..+..+|...|++++|.+.|+...++.|+++....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            64 788999999999999999999999999998887654433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=7.3e-06  Score=67.87  Aligned_cols=178  Identities=10%  Similarity=-0.001  Sum_probs=137.2

Q ss_pred             hhhh----cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCC-CChhHHHHHHHHHHc
Q 043686            4 GYSL----HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFNRIRS-PKVTHHALMVSVLAR   74 (282)
Q Consensus         4 ~~~~----~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~-p~~~~~~~li~~~~~   74 (282)
                      .|.+    .|++++|++.|++..+ .+   +...+..+-..+..    .++.++|.+.|+..+. .+...+..+...|.+
T Consensus        47 ~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           47 LYYQGQGVEKNLKKAASFYAKACD-LN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCCcCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence            4556    8999999999999988 65   77888888888988    9999999999991111 267788899999999


Q ss_pred             ----cCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cC
Q 043686           75 ----AGLFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EA  142 (282)
Q Consensus        75 ----~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g  142 (282)
                          .|++++|.+.|++..-.-+..++..+-..|.+    .+++++|.+.|++..+..  ++..+..|..+|..    .+
T Consensus       123 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~  200 (273)
T 1ouv_A          123 GKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATK  200 (273)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCC
T ss_pred             CCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCc
Confidence                99999999999985412357788888888888    899999999999988764  35788899999999    99


Q ss_pred             chhhhhcccceeeecCeE-------EEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 043686          143 KWDVVNQAYSWIEFRNKV-------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDS  191 (282)
Q Consensus       143 ~~~~A~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g  191 (282)
                      ++++|...+......+..       ..+..+....++.++|.    ..|++-.+.|
T Consensus       201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~----~~~~~a~~~~  252 (273)
T 1ouv_A          201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAI----ENFKKGCKLG  252 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHH----HHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHH----HHHHHHHHcC
Confidence            999999855443222222       22334444478888887    6776665554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.47  E-value=1.3e-07  Score=89.55  Aligned_cols=137  Identities=11%  Similarity=-0.068  Sum_probs=116.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~   78 (282)
                      ..|.+.|++++|++.|++..+   ..| +...|..+-.++...|++++|.+.|+  ..+.|+ ...|..+..+|.+.|++
T Consensus       441 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~  517 (681)
T 2pzi_A          441 RALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT  517 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence            357789999999999999887   345 45678888889999999999999999  666774 77899999999999999


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      ++ .+.|++.. ..|+ ...|..+-..|.+.|++++|.+.|++..++.|++...|..+..+|...++
T Consensus       518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          518 DE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            99 99998854 5665 88999999999999999999999999999999888899888888866554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.47  E-value=2e-06  Score=73.20  Aligned_cols=137  Identities=12%  Similarity=0.057  Sum_probs=102.5

Q ss_pred             HHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhcc--CCC---ChhHHHHHHHHHHccCChHHHHHHHHhc
Q 043686           14 GLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRI--RSP---KVTHHALMVSVLARAGLFDEARIFIQEY   88 (282)
Q Consensus        14 A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g--~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m   88 (282)
                      |++.|++... .+ .++..++..+-.++...|++++|.+++..+  ..|   +...+..++..|.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~-~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLK-DK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTT-TS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7788888776 54 566666667777888899999999999833  333   4667888899999999999999999998


Q ss_pred             C-CCC-----CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           89 H-MER-----YPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        89 ~-~~p-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      . ..|     +-.+..-|..++..    .++..+|..+|+++.+..|+ ..+-..|+.++.+.|++++|++.+..
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 677     34555556656322    33899999999998776663 23445566689999999999986643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.46  E-value=4.1e-07  Score=72.91  Aligned_cols=146  Identities=11%  Similarity=0.035  Sum_probs=106.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCH-HHHHH----------------HHHHHhcCCCHHHHHHHhh--ccCCC-Chh
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDP-LTFAA----------------VLHACSTAGMVEEGWLCFN--RIRSP-KVT   63 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~-~ty~~----------------ll~a~~~~g~~~~a~~l~~--~g~~p-~~~   63 (282)
                      .+.+.|++++|+..|++..+   ..|+. ..|..                +-.++.+.|++++|...|+  ..+.| +..
T Consensus        13 ~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   89 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD   89 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence            46789999999999999887   45654 34555                7778999999999999999  66667 478


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQ--VKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      .+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+...|...|+  .+++...++......|.. ..+..+..++.
T Consensus        90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~  168 (208)
T 3urz_A           90 CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YARYRDGLSKL  168 (208)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHH
Confidence            89999999999999999999999964 6675 8899999988876654  344555555543322211 23334455566


Q ss_pred             HcCchhhhhcccce
Q 043686          140 AEAKWDVVNQAYSW  153 (282)
Q Consensus       140 ~~g~~~~A~~~~~~  153 (282)
                      ..|++++|...++.
T Consensus       169 ~~~~~~~A~~~~~~  182 (208)
T 3urz_A          169 FTTRYEKARNSLQK  182 (208)
T ss_dssp             HHHTHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHH
Confidence            67787777664443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.46  E-value=1.5e-06  Score=73.84  Aligned_cols=121  Identities=12%  Similarity=-0.054  Sum_probs=89.5

Q ss_pred             CCChhHHHHHHHHHHccCChHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----Chh
Q 043686           59 SPKVTHHALMVSVLARAGLFDEARIFIQEY-HMER---YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL-----SAE  129 (282)
Q Consensus        59 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-----~~~  129 (282)
                      .++..++..+..+|...|++++|.+++.+- ...|   +...+-.++..|.+.|+.+.|.+.+++|.+..|+     + .
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d-~  175 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDN-E  175 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHH-H
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccch-H
Confidence            456666678889999999999999999985 4343   4788899999999999999999999999999983     3 4


Q ss_pred             HHHHHHHH--HH--HcCchhhhhcccceeeecCe----EEEEecCCCCCCChHHHHHHH
Q 043686          130 NYIMLSNW--YA--AEAKWDVVNQAYSWIEFRNK----VHVFGTGDVSCPRSEGIFWEL  180 (282)
Q Consensus       130 ~~~~Li~~--y~--~~g~~~~A~~~~~~~~~~~~----~~~~i~~~~~~~~~~~a~~~~  180 (282)
                      +...|..+  ..  ..++..+|...|+.+.....    ...++.++...|++++|.+.+
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIV  234 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence            44555545  22  23489999887776544332    123334677889999997333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.45  E-value=3.7e-07  Score=77.12  Aligned_cols=151  Identities=7%  Similarity=-0.084  Sum_probs=106.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCCCC-CHHHHHHHHHHHhcC-CCHHHHHHHhh--ccCCCC-------hhHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSIEI-DPLTFAAVLHACSTA-GMVEEGWLCFN--RIRSPK-------VTHHALM   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p-~~~ty~~ll~a~~~~-g~~~~a~~l~~--~g~~p~-------~~~~~~l   68 (282)
                      ..|.+.|++++|+..|++..+-   .|-.+ -..+++.+-..|... |++++|...|+  ..+.|+       ..+++.+
T Consensus        85 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  164 (292)
T 1qqe_A           85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC  164 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            3577889999999999987650   11111 135788888899996 99999999999  222221       3578899


Q ss_pred             HHHHHccCChHHHHHHHHhcC-CCCC---H-----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhH-----HHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH-MERY---P-----EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAEN-----YIML  134 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-~~p~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~-----~~~L  134 (282)
                      ...|.+.|++++|.+.|++.. ..|+   .     .+|..+..+|...|++++|...|++..++.|....+     +..|
T Consensus       165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l  244 (292)
T 1qqe_A          165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL  244 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence            999999999999999999854 3333   1     267888889999999999999999999888864332     3445


Q ss_pred             HHHHH--HcCchhhhhcccce
Q 043686          135 SNWYA--AEAKWDVVNQAYSW  153 (282)
Q Consensus       135 i~~y~--~~g~~~~A~~~~~~  153 (282)
                      ...|.  ..+++++|...++.
T Consensus       245 ~~~~~~~~~~~~~~A~~~~~~  265 (292)
T 1qqe_A          245 IDAVNEGDSEQLSEHCKEFDN  265 (292)
T ss_dssp             HHHHHTTCTTTHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHHhcc
Confidence            66664  34556666665543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.44  E-value=8.8e-07  Score=77.44  Aligned_cols=148  Identities=11%  Similarity=0.007  Sum_probs=117.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--------ccC-CC-ChhHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKS-SIEID----PLTFAAVLHACSTAGMVEEGWLCFN--------RIR-SP-KVTHHALM   68 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~-g~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~-~p-~~~~~~~l   68 (282)
                      .+...|++++|++.|++..+ . .-.||    ..+|..+-..+...|+.++|...+.        .+- .| ...+++.+
T Consensus       112 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAES-KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            35678999999999999865 2 11233    3577888889999999999999998        111 22 24678899


Q ss_pred             HHHHHccCChHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cC-CCChhHHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH-M---ERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LK-PLSAENYIML  134 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-p~~~~~~~~L  134 (282)
                      ...|...|++++|.+.|++.. +   .+|    ..+|+.+...|...|++++|.+.|++...     .. |..+.++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            999999999999999998843 1   122    35889999999999999999999999885     34 6566788999


Q ss_pred             HHHHHHcCchhhhhcccc
Q 043686          135 SNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       135 i~~y~~~g~~~~A~~~~~  152 (282)
                      ...|.+.|++++|...+.
T Consensus       271 ~~~~~~~g~~~~A~~~~~  288 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHS  288 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHH
Confidence            999999999999977443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.44  E-value=6.2e-06  Score=69.42  Aligned_cols=144  Identities=6%  Similarity=-0.130  Sum_probs=107.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCC-CCH----HHHHHHHHHHhcCCCHHHHHHHhh--cc-----CCCC--hhHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIE-IDP----LTFAAVLHACSTAGMVEEGWLCFN--RI-----RSPK--VTHHALM   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~-p~~----~ty~~ll~a~~~~g~~~~a~~l~~--~g-----~~p~--~~~~~~l   68 (282)
                      ..+...|++++|++.+.+..+ ..-. ++.    ..+..+...+...|++++|...+.  ..     ..+.  ..+|+.+
T Consensus        83 ~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 2qfc_A           83 IMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            457789999999999998776 3221 111    223345556778899999999987  11     1122  4488999


Q ss_pred             HHHHHccCChHHHHHHHHhcC----CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------ChhHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH----MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL------SAENYIM  133 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~----~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~------~~~~~~~  133 (282)
                      ...|.+.|++++|.+.|++..    ..|+     ..+|+.+...|.+.|++++|.+.+++...+.+.      ...+|..
T Consensus       162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~  241 (293)
T 2qfc_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            999999999999999998742    1232     268899999999999999999999998854221      1467888


Q ss_pred             HHHHHHHcCchhhh
Q 043686          134 LSNWYAAEAKWDVV  147 (282)
Q Consensus       134 Li~~y~~~g~~~~A  147 (282)
                      +...|.+.|+.++|
T Consensus       242 lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          242 RGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHTTCCHHH
T ss_pred             HHHHHHHcCCcHHH
Confidence            99999999999888

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.43  E-value=1.5e-06  Score=66.50  Aligned_cols=115  Identities=8%  Similarity=-0.087  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHH
Q 043686           30 DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGC  104 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~  104 (282)
                      +...+..+-..+.+.|++++|.+.|+  ..+.| +...|..+..+|.+.|++++|.+.|++.. +.|+ ...|..+...|
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45577778888999999999999999  55556 57889999999999999999999999854 5665 88999999999


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHH--HHHHHHHHHcCch
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENY--IMLSNWYAAEAKW  144 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~--~~Li~~y~~~g~~  144 (282)
                      .+.|++++|.+.|++..++.|++...|  ..+..+..+.+..
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876644  3444444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.43  E-value=1e-06  Score=67.22  Aligned_cols=101  Identities=11%  Similarity=-0.045  Sum_probs=87.2

Q ss_pred             CCCCH-HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHH
Q 043686           27 IEIDP-LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRAL  100 (282)
Q Consensus        27 ~~p~~-~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~l  100 (282)
                      +.|+. ..+..+-..+.+.|++++|...|+  ..+.| +...|..+..+|.+.|++++|.+.|++.. +.|+ ...|..+
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            44544 356667778999999999999999  66677 47889999999999999999999999864 5665 7899999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686          101 LEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus       101 i~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      -.+|.+.|++++|.+.|++..++.|++
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999955

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.42  E-value=1.3e-06  Score=65.26  Aligned_cols=102  Identities=11%  Similarity=-0.019  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhc
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIH  107 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~  107 (282)
                      .+..+-..+.+.|++++|...|+  ....| +...|..+..+|.+.|++++|.+.|++.. ..|+ ...|..+..+|...
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            34445556777888888888887  44555 46677778888888888888888887754 4454 66777788888888


Q ss_pred             CChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686          108 VQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus       108 g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      |++++|.+.|+....+.|+++......
T Consensus       100 g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A          100 GDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence            888888888888887777665444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.41  E-value=1.5e-06  Score=65.07  Aligned_cols=98  Identities=9%  Similarity=-0.052  Sum_probs=84.4

Q ss_pred             ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           56 RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        56 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      ..+.|+ ...+..+...+.+.|++++|.+.|++.. ..| +...|..+-.+|.+.|++++|...|++...+.|+++..+.
T Consensus        11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   90 (142)
T 2xcb_A           11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF   90 (142)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence            345563 5567778888999999999999999864 456 5889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCchhhhhcccce
Q 043686          133 MLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       133 ~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      .+..+|...|++++|...+..
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~  111 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYS  111 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999765543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.41  E-value=3.5e-06  Score=77.77  Aligned_cols=129  Identities=14%  Similarity=0.011  Sum_probs=110.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ..|.+.|++++|++.|++..+   ..|+ ...+..+-.++.+.|++++|.+.++  ....| +...+..+...|.+.|++
T Consensus        31 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  107 (568)
T 2vsy_A           31 DAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA  107 (568)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence            357788999999999999877   4454 6688888889999999999999999  45556 477899999999999999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIH---VQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      ++|.+.|++.. ..| +..+|..+...|...   |+.++|.+.+++..+..|.+...|..|
T Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  168 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL  168 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence            99999999854 455 488999999999999   999999999999999988776666544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.40  E-value=3.1e-06  Score=62.18  Aligned_cols=113  Identities=7%  Similarity=-0.110  Sum_probs=87.8

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG  103 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~  103 (282)
                      .+...|..+-..+.+.|++++|...|.  ....| +...|..+...|.+.|++++|.+.|++.. ..|+ ..+|..+...
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            466788888888999999999999998  44455 46788889999999999999999998854 4554 7888889999


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHc
Q 043686          104 CRIHVQVKTGKRVIDQLCELKPL-----SAENYIMLSNWYAAE  141 (282)
Q Consensus       104 ~~~~g~~~~A~~~~~~m~~~~p~-----~~~~~~~Li~~y~~~  141 (282)
                      |.+.|++++|...|++..++.|+     +......+.....+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998877665     334455554444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.40  E-value=3.8e-06  Score=61.09  Aligned_cols=107  Identities=9%  Similarity=-0.102  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRI  106 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~  106 (282)
                      ..|..+-..+.+.|++++|...|+  ....| +...|..+..+|.+.|++++|.+.|++.. ..|+ ..+|..+..+|..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            456666667788888888888888  44455 46788888888899999999999888854 4554 7788888888999


Q ss_pred             cCChhHHHHHHHHHHhcC------CCChhHHHHHHHHH
Q 043686          107 HVQVKTGKRVIDQLCELK------PLSAENYIMLSNWY  138 (282)
Q Consensus       107 ~g~~~~A~~~~~~m~~~~------p~~~~~~~~Li~~y  138 (282)
                      .|++++|.+.|++..++.      |.+......+....
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            999999999999888777      76655555554443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.39  E-value=3.1e-06  Score=64.69  Aligned_cols=93  Identities=10%  Similarity=-0.010  Sum_probs=84.0

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...+..+...|.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|...|++..++.|+++..|..+...|
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45678889999999999999999999854 556 5889999999999999999999999999999999999999999999


Q ss_pred             HHcCchhhhhcccce
Q 043686          139 AAEAKWDVVNQAYSW  153 (282)
Q Consensus       139 ~~~g~~~~A~~~~~~  153 (282)
                      .+.|++++|...+..
T Consensus        90 ~~~g~~~~A~~~~~~  104 (164)
T 3sz7_A           90 FDMADYKGAKEAYEK  104 (164)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHH
Confidence            999999999886554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.39  E-value=4e-06  Score=70.61  Aligned_cols=125  Identities=7%  Similarity=-0.101  Sum_probs=103.6

Q ss_pred             CC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHH-H
Q 043686           29 ID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALL-E  102 (282)
Q Consensus        29 p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li-~  102 (282)
                      |+ ...+..+-..+.+.|++++|...|+  ....| +...+..+...|.+.|++++|.+.+++.. ..|+........ .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            44 4566677778899999999999999  66667 46788999999999999999999999976 678755433333 3


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          103 GCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       103 ~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      .+.+.++.++|.+.+++.....|+++..+..|...|...|++++|...+..
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~  244 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG  244 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            477889999999999999999999999999999999999999988664433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.37  E-value=2.7e-06  Score=61.88  Aligned_cols=91  Identities=9%  Similarity=-0.070  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      ...|..+...+.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|.+.|++..++.|+++..|..+...|.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4567788899999999999999999854 455 58899999999999999999999999999999999999999999999


Q ss_pred             HcCchhhhhcccc
Q 043686          140 AEAKWDVVNQAYS  152 (282)
Q Consensus       140 ~~g~~~~A~~~~~  152 (282)
                      ..|++++|...+.
T Consensus        84 ~~~~~~~A~~~~~   96 (126)
T 3upv_A           84 AVKEYASALETLD   96 (126)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HHhCHHHHHHHHH
Confidence            9999999876443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.36  E-value=1e-06  Score=78.88  Aligned_cols=250  Identities=11%  Similarity=-0.006  Sum_probs=149.5

Q ss_pred             hhhhcCChHHHHHHHHHhHHh----CC--CCC-CHHHHHHHHHHHhcCCCHHHHHHHhh----------ccCCCC-hhHH
Q 043686            4 GYSLHGQRELGLSLFSELEKK----SS--IEI-DPLTFAAVLHACSTAGMVEEGWLCFN----------RIRSPK-VTHH   65 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~----~g--~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~----------~g~~p~-~~~~   65 (282)
                      .|...|+.++|++.|++-.+-    .+  ..| ...+|+.+-.+|...|++++|...++          ....++ ..+|
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            456789999999999875430    11  133 45789999999999999999999887          112222 4567


Q ss_pred             HHHHHHHHcc--CChHHHHHHHHhcC-CCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           66 ALMVSVLARA--GLFDEARIFIQEYH-MERY-PEVLRALLEG---CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        66 ~~li~~~~~~--g~~~~A~~l~~~m~-~~p~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +.+..++.+.  +++++|.+.|++.. +.|+ ...+..+...   +...++.++|.+.+++..++.|+++.++..+...+
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            6666666554  46999999999854 5676 5566655554   44567888999999999999998888887776666


Q ss_pred             HHc----CchhhhhcccceeeecC----eE-EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCCCcccccchhhhhh
Q 043686          139 AAE----AKWDVVNQAYSWIEFRN----KV-HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKPDFSLHYVDEERKW  209 (282)
Q Consensus       139 ~~~----g~~~~A~~~~~~~~~~~----~~-~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~~t~~~~~~~~~~~  209 (282)
                      .+.    |+.++|.+.+.......    .+ ..+-..+...|+.++|.    ..+++..+  ..|+.......+..+-+.
T Consensus       220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~----~~~~~al~--~~p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI----ELLKKALE--YIPNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH----HHHHHHHH--HSTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH----HHHHHHHH--hCCChHHHHHHHHHHHHH
Confidence            554    45666666443211110    00 22333456677888887    44544432  346553322211111100


Q ss_pred             --------------------hhhh-hhHHHHHHhhhccCCCCCeEEEeeccccccchHHHHHHHHHhhcce
Q 043686          210 --------------------TQIG-HSEILALSFGLISTQVGATIHVTKNLRMRHICHDFAKAISKMVEGE  259 (282)
Q Consensus       210 --------------------~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~~  259 (282)
                                          .... ....+.....+.+........+-..+...|+.++|.+.|++..+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence                                0000 1111112223333333322224455668899999999998876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.35  E-value=6.2e-06  Score=65.09  Aligned_cols=141  Identities=6%  Similarity=-0.074  Sum_probs=104.8

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-h----------------hHHH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-V----------------THHA   66 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~----------------~~~~   66 (282)
                      ...|.+++|.+.|+.-.. . -......+..+-..+.+.|++++|.+.|+  ..+.|+ .                ..|.
T Consensus        15 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDE-E-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             -------CCCSGGGCCHH-H-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHH-H-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            344555555555543222 0 01123456667778889999999999998  333332 2                6888


Q ss_pred             HHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686           67 LMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus        67 ~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      .+..+|.+.|++++|.+.+++.. ..| +..+|..+..+|...|++++|.+.|++...+.|++...+..+...+...++.
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999854 455 5889999999999999999999999999999999989999999999998888


Q ss_pred             hhhh
Q 043686          145 DVVN  148 (282)
Q Consensus       145 ~~A~  148 (282)
                      +++.
T Consensus       173 ~~~~  176 (198)
T 2fbn_A          173 RKKD  176 (198)
T ss_dssp             HC--
T ss_pred             HHHH
Confidence            8776

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.35  E-value=6.2e-06  Score=71.97  Aligned_cols=147  Identities=10%  Similarity=-0.047  Sum_probs=116.6

Q ss_pred             hhhcCChHHHHHHHHHhHHhCC-CCCC----HHHHHHHHHHHhcCCCHHHHHHHhh--------cc-CCC-ChhHHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSS-IEID----PLTFAAVLHACSTAGMVEEGWLCFN--------RI-RSP-KVTHHALMV   69 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g-~~p~----~~ty~~ll~a~~~~g~~~~a~~l~~--------~g-~~p-~~~~~~~li   69 (282)
                      +...|++++|+..|++..+ .- -.||    ..++..+-..+...|++++|...+.        .+ ..+ ...+++.+.
T Consensus       111 ~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEK-ELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHT-TGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHH-HHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            4678999999999999865 21 1233    3467778888999999999999888        11 122 256788999


Q ss_pred             HHHHccCChHHHHHHHHhcC-C---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCChhHHHHHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH-M---ERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLSAENYIMLSN  136 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~---~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~~~~~~~Li~  136 (282)
                      ..|...|++++|.+.|++.. +   .++    ..+++.|-..|...|++++|.+.|++...     ..|..+.++..+..
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            99999999999999998743 1   122    45788899999999999999999999986     56766778889999


Q ss_pred             HHHHcCchhhhhcccc
Q 043686          137 WYAAEAKWDVVNQAYS  152 (282)
Q Consensus       137 ~y~~~g~~~~A~~~~~  152 (282)
                      .|.+.|+.++|...+.
T Consensus       270 ~~~~~g~~~~A~~~~~  285 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIE  285 (378)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHH
Confidence            9999999999987443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.35  E-value=4.6e-06  Score=60.52  Aligned_cols=92  Identities=9%  Similarity=0.002  Sum_probs=82.1

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...|...|++++|.+.|++..+..|++...+..+...|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            46788899999999999999999999854 455 5889999999999999999999999999999999889999999999


Q ss_pred             HHcCchhhhhcccc
Q 043686          139 AAEAKWDVVNQAYS  152 (282)
Q Consensus       139 ~~~g~~~~A~~~~~  152 (282)
                      .+.|++++|...+.
T Consensus        95 ~~~~~~~~A~~~~~  108 (133)
T 2lni_A           95 EAMKDYTKAMDVYQ  108 (133)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHH
Confidence            99999888866443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.35  E-value=5e-06  Score=68.56  Aligned_cols=146  Identities=10%  Similarity=0.037  Sum_probs=111.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCC-CCCC-HHHHHHHHHHHhc--------CCCHHHHHHHhh--ccCCCC-hhHH----
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSS-IEID-PLTFAAVLHACST--------AGMVEEGWLCFN--RIRSPK-VTHH----   65 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g-~~p~-~~ty~~ll~a~~~--------~g~~~~a~~l~~--~g~~p~-~~~~----   65 (282)
                      ..|.+.|++++|+..|++..+ .. -.|+ ...+..+-.++.+        .|++++|...|+  ....|+ ....    
T Consensus        60 ~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  138 (261)
T 3qky_A           60 RAYYQNKEYLLAASEYERFIQ-IYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ  138 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHH-HCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence            457889999999999999887 32 1223 3456666667777        999999999999  444454 3444    


Q ss_pred             -------------HHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhc----------CChhHHHHHH
Q 043686           66 -------------ALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIH----------VQVKTGKRVI  117 (282)
Q Consensus        66 -------------~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~  117 (282)
                                   ..+...|.+.|++++|.+.|++.. ..|+    ...+..+..+|.+.          |++++|...|
T Consensus       139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~  218 (261)
T 3qky_A          139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY  218 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence                         455788999999999999999864 3454    45788888888866          8999999999


Q ss_pred             HHHHhcCCCCh---hHHHHHHHHHHHcCchhhhhc
Q 043686          118 DQLCELKPLSA---ENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       118 ~~m~~~~p~~~---~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++..+..|+++   .+...+-..+.+.++++++..
T Consensus       219 ~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~  253 (261)
T 3qky_A          219 ERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS  253 (261)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            99999999774   345566777777777776654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.34  E-value=5.8e-06  Score=60.67  Aligned_cols=91  Identities=10%  Similarity=-0.089  Sum_probs=81.6

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...|..+...|.+.|++++|...|++.. ..|+ ...|..+...|.+.|++++|...|++.....|+++..|..+...|
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            57788999999999999999999999854 4554 889999999999999999999999999999999999999999999


Q ss_pred             HHcCchhhhhccc
Q 043686          139 AAEAKWDVVNQAY  151 (282)
Q Consensus       139 ~~~g~~~~A~~~~  151 (282)
                      ...|++++|...+
T Consensus        88 ~~~~~~~~A~~~~  100 (137)
T 3q49_B           88 LEMESYDEAIANL  100 (137)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHH
Confidence            9999988886544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.33  E-value=5.5e-06  Score=58.53  Aligned_cols=93  Identities=11%  Similarity=0.012  Sum_probs=81.6

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...+..+...+...|++++|.+.|++.. ..| +...|..+...|.+.|++++|...+++..+..|+++..+..+...|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45678888999999999999999999864 345 6889999999999999999999999999999998889999999999


Q ss_pred             HHcCchhhhhcccce
Q 043686          139 AAEAKWDVVNQAYSW  153 (282)
Q Consensus       139 ~~~g~~~~A~~~~~~  153 (282)
                      .+.|++++|...+..
T Consensus        83 ~~~~~~~~A~~~~~~   97 (118)
T 1elw_A           83 EFLNRFEEAKRTYEE   97 (118)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            999999888764443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.33  E-value=2.6e-06  Score=60.11  Aligned_cols=96  Identities=9%  Similarity=-0.044  Sum_probs=82.7

Q ss_pred             CChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------hhHH
Q 043686           60 PKVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS------AENY  131 (282)
Q Consensus        60 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~------~~~~  131 (282)
                      ++...+..+...+.+.|++++|.+.|++.. ..| +..+|..+..+|.+.|++++|.+.|++..++.|++      ...+
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            456778889999999999999999999854 455 58899999999999999999999999999999987      6778


Q ss_pred             HHHHHHHHHcCchhhhhcccceee
Q 043686          132 IMLSNWYAAEAKWDVVNQAYSWIE  155 (282)
Q Consensus       132 ~~Li~~y~~~g~~~~A~~~~~~~~  155 (282)
                      ..+...+...|+.++|...+..++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHhH
Confidence            888888999999998888766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.31  E-value=3.8e-06  Score=58.87  Aligned_cols=88  Identities=6%  Similarity=-0.108  Sum_probs=47.6

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--ChhHHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL--SAENYIMLSNW  137 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~  137 (282)
                      ...+..+...|.+.|++++|...|++.. ..| +..+|..+...|.+.|++++|.+.|++..+..|.  +...+..+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            3444555555555555555555555532 222 3455555555555555566665555555555555  55555555555


Q ss_pred             HHHc-Cchhhhhc
Q 043686          138 YAAE-AKWDVVNQ  149 (282)
Q Consensus       138 y~~~-g~~~~A~~  149 (282)
                      |.+. |++++|.+
T Consensus        86 ~~~~~~~~~~A~~   98 (112)
T 2kck_A           86 LRYIEGKEVEAEI   98 (112)
T ss_dssp             HTTCSSCSHHHHH
T ss_pred             HHHHhCCHHHHHH
Confidence            5555 55555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.31  E-value=3.1e-06  Score=61.69  Aligned_cols=88  Identities=11%  Similarity=-0.040  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      .+..+...+.+.|++++|...|++.. ..| +...|..+-..+.+.|++++|...|++..++.|+++..+..|...|.+.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45556677788888888888888754 455 4778888888888888888888888888888888888888888888888


Q ss_pred             Cchhhhhccc
Q 043686          142 AKWDVVNQAY  151 (282)
Q Consensus       142 g~~~~A~~~~  151 (282)
                      |++++|...+
T Consensus        99 g~~~~A~~~~  108 (121)
T 1hxi_A           99 HNANAALASL  108 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            8888886644

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.31  E-value=6e-06  Score=64.78  Aligned_cols=145  Identities=10%  Similarity=-0.074  Sum_probs=106.2

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHHHHHHcc
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMVSVLARA   75 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li~~~~~~   75 (282)
                      ....|++++|.++++.... . ......++..+-..+...|++++|...++        .+..| ...++..+...|...
T Consensus         2 ~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   79 (203)
T 3gw4_A            2 AFEAHDYALAERQAQALLA-H-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA   79 (203)
T ss_dssp             -----CHHHHHHHHHHHHT-S-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHhcC-C-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence            4568999999996655543 1 22355688888889999999999999998        33444 356788999999999


Q ss_pred             CChHHHHHHHHhcC-C---CC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC----hhHHHHHHHHHHH
Q 043686           76 GLFDEARIFIQEYH-M---ER-Y----PEVLRALLEGCRIHVQVKTGKRVIDQLCELK--PLS----AENYIMLSNWYAA  140 (282)
Q Consensus        76 g~~~~A~~l~~~m~-~---~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--p~~----~~~~~~Li~~y~~  140 (282)
                      |++++|.+.|++.. .   .| +    ..+++.+...+...|++++|.+.+++.....  ..+    ..++..+...|..
T Consensus        80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  159 (203)
T 3gw4_A           80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ  159 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            99999999998743 1   22 2    4568888899999999999999999987431  112    2345788888999


Q ss_pred             cCchhhhhccc
Q 043686          141 EAKWDVVNQAY  151 (282)
Q Consensus       141 ~g~~~~A~~~~  151 (282)
                      .|++++|...+
T Consensus       160 ~g~~~~A~~~~  170 (203)
T 3gw4_A          160 EKNLLEAQQHW  170 (203)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CcCHHHHHHHH
Confidence            99988886533

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.30  E-value=1.6e-06  Score=67.00  Aligned_cols=110  Identities=12%  Similarity=0.093  Sum_probs=89.3

Q ss_pred             hcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHH-HHhcCCh--hHH
Q 043686           42 STAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEG-CRIHVQV--KTG  113 (282)
Q Consensus        42 ~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~-~~~~g~~--~~A  113 (282)
                      ...|++++|...++  ....| +...|..+...|...|++++|.+.|++.. ..| +...|..+... |.+.|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            45677888888887  34445 57889999999999999999999999864 445 57888888888 8899998  999


Q ss_pred             HHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686          114 KRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       114 ~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ...|++..+..|+++..+..+...|.+.|++++|...+
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  138 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW  138 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence            99999999999999899999999999999988885544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.30  E-value=1.5e-06  Score=75.57  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=84.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCCC-CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC---C----hhHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSIE-IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP---K----VTHHALMV   69 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~-p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p---~----~~~~~~li   69 (282)
                      ..|...|++++|+..|++....   .+-. ....++..+-..+...|++++|...++  ..+.|   +    ..++..+.
T Consensus        55 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  134 (406)
T 3sf4_A           55 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG  134 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            3456667777777776664330   1111 236667777777777777777776666  11111   1    33566666


Q ss_pred             HHHHccCC--------------------hHHHHHHHHhcC-----C--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           70 SVLARAGL--------------------FDEARIFIQEYH-----M--ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        70 ~~~~~~g~--------------------~~~A~~l~~~m~-----~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ..|...|+                    +++|.+.+++..     .  .|. ..+|+.+...|...|++++|.+.+++..
T Consensus       135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (406)
T 3sf4_A          135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  214 (406)
T ss_dssp             HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            66666777                    666666665531     1  111 3456666666777777777777777666


Q ss_pred             hcCCCC------hhHHHHHHHHHHHcCchhhhhc
Q 043686          122 ELKPLS------AENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       122 ~~~p~~------~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ++.|..      ..++..+...|...|++++|..
T Consensus       215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            432211      1256666666777777776666

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.30  E-value=4.8e-06  Score=60.04  Aligned_cols=111  Identities=6%  Similarity=-0.009  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-C----CCC----HHHHH
Q 043686           31 PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-M----ERY----PEVLR   98 (282)
Q Consensus        31 ~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~----~p~----~~~~~   98 (282)
                      ...|..+-..+...|++++|...|+  ....| +...+..+...|.+.|++++|...|++.. .    .++    ..+|.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            3466777778888999999999998  33334 57788889999999999999999998853 2    223    77888


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           99 ALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        99 ~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      .+...|.+.|++++|.+.|++.....| +......+...+...+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            899999999999999999999998888 5566666666554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.29  E-value=1.2e-05  Score=60.78  Aligned_cols=117  Identities=7%  Similarity=-0.118  Sum_probs=94.4

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..+.+.|++++|+..|.+..+ .. +.+..++..+...+...|++++|...++  ....| +...|..+...|.+.|+++
T Consensus        21 ~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~   98 (166)
T 1a17_A           21 NDYFKAKDYENAIKFYSQAIE-LN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   98 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHccCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHH
Confidence            356789999999999999876 32 2357788888889999999999999999  44455 5778999999999999999


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHH--HHHhcCChhHHHHHHHHHH
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLE--GCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~  121 (282)
                      +|.+.|++.. ..| +...+..+..  .+.+.|++++|.+.+....
T Consensus        99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           99 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            9999999864 444 4556644444  4888899999999999876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.28  E-value=1e-06  Score=74.99  Aligned_cols=150  Identities=6%  Similarity=-0.079  Sum_probs=105.9

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMV   69 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li   69 (282)
                      ..|...|++++|.+.|.+..+-   .|-.+. ..+|+.+...|.+.|++++|.+.|+        .|-.+ -..+++.+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3466778888888888876540   111111 3477888888888999999888887        12111 145778888


Q ss_pred             HHHHccCChHHHHHHHHhcC-CCC---C----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------hhHHHHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH-MER---Y----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS------AENYIMLS  135 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~~p---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~------~~~~~~Li  135 (282)
                      ..|.+ |++++|.+.|++.. +.|   +    ..+|+.+...|.+.|++++|.+.|++...+.|.+      ..++..+.
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            88888 99999999998743 111   1    4678888889999999999999999988654322      12566666


Q ss_pred             HHHHHcCchhhhhcccce
Q 043686          136 NWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~~~  153 (282)
                      ..|...|++++|...+..
T Consensus       203 ~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            777777888888775554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.28  E-value=3e-06  Score=76.88  Aligned_cols=112  Identities=7%  Similarity=-0.032  Sum_probs=89.5

Q ss_pred             HhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686           41 CSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      +.+.|++++|.+.|+  ....|+ ...|..+..+|.+.|++++|.+.+++.. ..|+ ..+|..+..+|.+.|++++|.+
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~   95 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR   95 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            455677777777776  344453 6788889999999999999999998854 5665 8899999999999999999999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHH--HHHcCchhhhhcccc
Q 043686          116 VIDQLCELKPLSAENYIMLSNW--YAAEAKWDVVNQAYS  152 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~~~Li~~--y~~~g~~~~A~~~~~  152 (282)
                      .|++..++.|++...+..+..+  |.+.|++++|.+.+.
T Consensus        96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999888888887777  888899999998665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=1e-05  Score=59.86  Aligned_cols=93  Identities=9%  Similarity=-0.073  Sum_probs=83.2

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS  135 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li  135 (282)
                      +...+..+...+.+.|++++|.+.|++.. ..|+    ..+|..+...|.+.|++++|.+.+++..+..|+++..+..+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            56788899999999999999999999854 6787    688999999999999999999999999999998888999999


Q ss_pred             HHHHHcCchhhhhcccce
Q 043686          136 NWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~~~  153 (282)
                      ..|...|++++|...+..
T Consensus       107 ~~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            999999999999775543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.27  E-value=5.3e-06  Score=58.14  Aligned_cols=96  Identities=11%  Similarity=-0.083  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC---CHHHHHHHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER---YPEVLRALLEGC  104 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p---~~~~~~~li~~~  104 (282)
                      ..+..+-..+.+.|++++|...|+  ....| +...|..+...|.+.|++++|.+.|++.. ..|   +..+|..+...|
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            456667777888999999999998  33444 56788899999999999999999999854 455   488999999999


Q ss_pred             Hhc-CChhHHHHHHHHHHhcCCCC
Q 043686          105 RIH-VQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus       105 ~~~-g~~~~A~~~~~~m~~~~p~~  127 (282)
                      .+. |++++|.+.+++.....|++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHhCCHHHHHHHHHHHhhcccCC
Confidence            999 99999999999999888855

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.26  E-value=4.3e-06  Score=75.39  Aligned_cols=119  Identities=7%  Similarity=0.006  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC----------------hhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686           31 PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK----------------VTHHALMVSVLARAGLFDEARIFIQEYH-ME   91 (282)
Q Consensus        31 ~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~   91 (282)
                      ...|..+-..+.+.|++++|...|+  ..+.|+                ...|..+..+|.+.|++++|.+.|++.. +.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            3467777888999999999999999  444454                4789999999999999999999999854 55


Q ss_pred             C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           92 R-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        92 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      | +..+|..+-.+|.+.|++++|...|++..++.|++...+..+..++.+.++.++|.+
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 488999999999999999999999999999999999999999999999999888765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.25  E-value=9.1e-06  Score=58.45  Aligned_cols=92  Identities=8%  Similarity=-0.043  Sum_probs=80.9

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...+..+...+...|++++|.+.|++.. ..| +..+|..+...|...|++++|.+.+++.....|+++..+..+...|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            45678889999999999999999999864 344 5889999999999999999999999999999998888999999999


Q ss_pred             HHcCchhhhhcccc
Q 043686          139 AAEAKWDVVNQAYS  152 (282)
Q Consensus       139 ~~~g~~~~A~~~~~  152 (282)
                      .+.|++++|...+.
T Consensus        91 ~~~~~~~~A~~~~~  104 (131)
T 2vyi_A           91 SSLNKHVEAVAYYK  104 (131)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHH
Confidence            99999888866443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.25  E-value=5.5e-05  Score=60.54  Aligned_cols=141  Identities=7%  Similarity=-0.079  Sum_probs=106.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC----CHHHHHHHhhccCCC-ChhHHHHHHHHHHc----
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG----MVEEGWLCFNRIRSP-KVTHHALMVSVLAR----   74 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g----~~~~a~~l~~~g~~p-~~~~~~~li~~~~~----   74 (282)
                      .|...+++++|++.|++..+ .|   +...+..|-..|.. +    +.++|.++|+....+ +...+..|-..|..    
T Consensus        27 ~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~  101 (212)
T 3rjv_A           27 TWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAG  101 (212)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGS
T ss_pred             HHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCC
Confidence            45567899999999999887 54   55667777777777 6    899999999833333 46677788888877    


Q ss_pred             cCChHHHHHHHHhcC-CCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC----
Q 043686           75 AGLFDEARIFIQEYH-MERY---PEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA----  142 (282)
Q Consensus        75 ~g~~~~A~~l~~~m~-~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g----  142 (282)
                      .++.++|.+.|++.- ..|.   ..+++.|-..|..    .++.++|.+.|++.... |.++..+..|-.+|.+..    
T Consensus       102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~  180 (212)
T 3rjv_A          102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFI  180 (212)
T ss_dssp             SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTB
T ss_pred             ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCC
Confidence            789999999998854 4443   7888888888888    78899999999998877 445578888888887642    


Q ss_pred             --chhhhhcc
Q 043686          143 --KWDVVNQA  150 (282)
Q Consensus       143 --~~~~A~~~  150 (282)
                        +.++|...
T Consensus       181 ~~d~~~A~~~  190 (212)
T 3rjv_A          181 EPNKQKALHW  190 (212)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence              55555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.24  E-value=1.9e-06  Score=62.17  Aligned_cols=88  Identities=6%  Similarity=-0.089  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHhh--ccC---CC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH
Q 043686           44 AGMVEEGWLCFN--RIR---SP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        44 ~g~~~~a~~l~~--~g~---~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      .|++++|...|+  ...   .| +...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+..+|.+.|++++|.+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            355555555555  223   24 35677888888999999999999998854 4554 7888889999999999999999


Q ss_pred             HHHHHHhcCCCChhHH
Q 043686          116 VIDQLCELKPLSAENY  131 (282)
Q Consensus       116 ~~~~m~~~~p~~~~~~  131 (282)
                      .|++.....|+++...
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            9999998888775443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.22  E-value=1.3e-05  Score=62.08  Aligned_cols=118  Identities=8%  Similarity=-0.048  Sum_probs=91.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCCHHHHHHHHHH-HHhcC
Q 043686           34 FAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERYPEVLRALLEG-CRIHV  108 (282)
Q Consensus        34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~~~~~~li~~-~~~~g  108 (282)
                      +...-..+.+.|++++|...|+  ....|+ ...+..+...|.+.|++++|.+.|++.. ..|+...+..+... +.+.+
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence            4455567888999999999999  555664 6788999999999999999999999975 55654433332211 23334


Q ss_pred             ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686          109 QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       109 ~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ...+|...+++.....|+++..+..+...|...|++++|...+
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4556899999999999999999999999999999988885533

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.20  E-value=6.2e-06  Score=71.21  Aligned_cols=116  Identities=9%  Similarity=-0.077  Sum_probs=99.6

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC----------------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-Chh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID----------------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVT   63 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~----------------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~   63 (282)
                      ..|.+.|++++|+..|++..+   +.|+                ...|..+-.++.+.|++++|...++  ..+.| +..
T Consensus       155 ~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~  231 (336)
T 1p5q_A          155 TVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK  231 (336)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            357789999999999999887   4455                4789999999999999999999999  55566 578


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTG-KRVIDQLC  121 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~  121 (282)
                      .|..+..+|.+.|++++|.+.|++.. +.|+ ..+|..+...+.+.|+.++| ...|+.|.
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999864 5664 78999999999999999998 55777776

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.20  E-value=1.5e-06  Score=76.21  Aligned_cols=189  Identities=8%  Similarity=-0.050  Sum_probs=134.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC-ChhHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP-KVTHHALMV   69 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p-~~~~~~~li   69 (282)
                      ..|...|++++|++.|++..+.   .+-.| ...++..+-..+...|++++|...++        .+-.| ...++..+.
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  173 (411)
T 4a1s_A           94 NAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG  173 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence            4577899999999999987651   11122 33567778888999999999999998        22233 256888999


Q ss_pred             HHHHccCC-----------------hHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686           70 SVLARAGL-----------------FDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        70 ~~~~~~g~-----------------~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  124 (282)
                      ..|...|+                 +++|.+.+++..       -.|. ..+|..+...|...|++++|.+.|++...+.
T Consensus       174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  253 (411)
T 4a1s_A          174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA  253 (411)
T ss_dssp             HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            99999999                 999999887742       1122 4588889999999999999999999998654


Q ss_pred             CCC------hhHHHHHHHHHHHcCchhhhhcccceeee----cC-------eEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 043686          125 PLS------AENYIMLSNWYAAEAKWDVVNQAYSWIEF----RN-------KVHVFGTGDVSCPRSEGIFWELQSLMKKM  187 (282)
Q Consensus       125 p~~------~~~~~~Li~~y~~~g~~~~A~~~~~~~~~----~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~~~M  187 (282)
                      |..      ..++..+...|...|++++|...+.....    .+       ....+-..+...|+.++|...+++.+...
T Consensus       254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  333 (411)
T 4a1s_A          254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA  333 (411)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            322      23788999999999999999984433211    00       01223344567888898885554444444


Q ss_pred             HhCC
Q 043686          188 EGDS  191 (282)
Q Consensus       188 ~~~g  191 (282)
                      ...+
T Consensus       334 ~~~~  337 (411)
T 4a1s_A          334 QELG  337 (411)
T ss_dssp             HHHT
T ss_pred             HHCC
Confidence            3333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.20  E-value=1.3e-05  Score=67.33  Aligned_cols=129  Identities=12%  Similarity=-0.022  Sum_probs=102.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCCCC----hhHHHHHHHHHHccCC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRSPK----VTHHALMVSVLARAGL   77 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~p~----~~~~~~li~~~~~~g~   77 (282)
                      ..+...|++++|.++|..+.. .  .|+....-.+-..+.+.+++++|...|+ .+-.|+    ...+..+-.++.+.|+
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~~-~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAPV-A--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSCC-T--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHh-c--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            457889999999999999876 3  4766555555557889999999999999 332232    2367888999999999


Q ss_pred             hHHHHHHHHhcC---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHH
Q 043686           78 FDEARIFIQEYH---MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLS  135 (282)
Q Consensus        78 ~~~A~~l~~~m~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li  135 (282)
                      +++|++.|++..   ..|.  ...+..+-.++.+.|+.++|..+|+++....|+ ...+..|.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            999999999863   2254  447778888999999999999999999999997 67666663

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.20  E-value=1.9e-06  Score=72.47  Aligned_cols=187  Identities=10%  Similarity=-0.039  Sum_probs=125.7

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCC-CCCHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSI-EIDPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALMV   69 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~-~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~li   69 (282)
                      ..|...|++++|++.|++....   .+- .....++..+-..+...|++++|.+.++        .+-.+. ..++..+.
T Consensus        51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  130 (338)
T 3ro2_A           51 NAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG  130 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            4677889999999988874211   222 2348888889999999999999998888        111111 34778888


Q ss_pred             HHHHccCC--------------------hHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           70 SVLARAGL--------------------FDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        70 ~~~~~~g~--------------------~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ..|...|+                    +++|.+.+++..       -.|. ..+|..+...|...|++++|.+.+++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  210 (338)
T 3ro2_A          131 NVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  210 (338)
T ss_dssp             HHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            88888888                    888888887642       1122 4578888888999999999999999887


Q ss_pred             hcCCC------ChhHHHHHHHHHHHcCchhhhhcccceee----ecC-------eEEEEecCCCCCCChHHHHHHHHHHH
Q 043686          122 ELKPL------SAENYIMLSNWYAAEAKWDVVNQAYSWIE----FRN-------KVHVFGTGDVSCPRSEGIFWELQSLM  184 (282)
Q Consensus       122 ~~~p~------~~~~~~~Li~~y~~~g~~~~A~~~~~~~~----~~~-------~~~~~i~~~~~~~~~~~a~~~~~~l~  184 (282)
                      ...|.      ...++..+...|...|++++|...+....    ..+       ....+-..+...|+.++|...+++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  290 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44221      12377888888999999999887443211    110       00223334566788888885554444


Q ss_pred             HHHHh
Q 043686          185 KKMEG  189 (282)
Q Consensus       185 ~~M~~  189 (282)
                      .....
T Consensus       291 ~~~~~  295 (338)
T 3ro2_A          291 AIAQE  295 (338)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            44433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.18  E-value=2.8e-05  Score=56.22  Aligned_cols=98  Identities=11%  Similarity=-0.044  Sum_probs=74.2

Q ss_pred             HHHHHhcCCCHHHHHHHhh--ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHH
Q 043686           37 VLHACSTAGMVEEGWLCFN--RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCR  105 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~--~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~  105 (282)
                      +-..+.+.|++++|...|+  ....|+.    ..+..+...|.+.|++++|.+.|++.. ..|+    ..++..+..+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            3345667788888888887  3334443    377778888999999999999998854 3444    567888888999


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686          106 IHVQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus       106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      +.|++++|...|++.....|++.......
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~  116 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ  116 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence            99999999999999998889775554443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.18  E-value=5.4e-06  Score=60.87  Aligned_cols=89  Identities=6%  Similarity=-0.028  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh-------HHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE-------NYI  132 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-------~~~  132 (282)
                      ...+..|...|.+.|++++|.+.|++.. +.|+ ..+|+.+-.+|.+.|++++|.+.|++..++.|.+..       +|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            4567789999999999999999999854 5665 889999999999999999999999999988775543       445


Q ss_pred             HHHHHHHHcCchhhhhcc
Q 043686          133 MLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus       133 ~Li~~y~~~g~~~~A~~~  150 (282)
                      .+...|...|++++|.+.
T Consensus        88 ~lg~~~~~~~~~~~A~~~  105 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQW  105 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHH
Confidence            555666666666666553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.18  E-value=1.4e-05  Score=70.02  Aligned_cols=118  Identities=8%  Similarity=-0.079  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--cc----------------CCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CC
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RI----------------RSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-ME   91 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g----------------~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~   91 (282)
                      ..+..+-..+.+.|++++|.+.|+  ..                ..| +...|..+..+|.+.|++++|.+.+++.. ..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            346667778888999999999888  22                445 36788999999999999999999999854 66


Q ss_pred             CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           92 RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        92 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      |+ ..+|..+-.+|.+.|++++|.+.|++..++.|++...+..|...+.+.++.+++.+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            65 88999999999999999999999999999999998899999999999999888865

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.16  E-value=1.2e-05  Score=61.31  Aligned_cols=115  Identities=12%  Similarity=-0.029  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccC------------------CC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIR------------------SP-KVTHHALMVSVLARAGLFDEARIFIQEYH-   89 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~------------------~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-   89 (282)
                      ..+...-..+.+.|++++|...|.  ..+                  .| +...|..+..+|.+.|++++|...+++.. 
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            345555566777777777777777  222                  23 24678899999999999999999999854 


Q ss_pred             CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHcCchhh
Q 043686           90 MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-ENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        90 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-~~~~~Li~~y~~~g~~~~  146 (282)
                      ..|+ ..+|..+..+|...|++++|...|++...+.|++. .....|-....+.+...+
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            5565 88999999999999999999999999999999876 344455454444444333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.15  E-value=1e-05  Score=59.41  Aligned_cols=101  Identities=9%  Similarity=0.006  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-C----CCC----HHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-M----ERY----PEVLRA   99 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~----~p~----~~~~~~   99 (282)
                      .++..+-..+.+.|++++|.+.|+  ..+.|+ ...|+.+-.+|.+.|++++|.+.|++.. +    .++    ..+|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            466777788899999999999998  556674 7788999999999999999999998743 2    222    347888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686          100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM  133 (282)
Q Consensus       100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~  133 (282)
                      +-..|...|++++|.+.|++.....| ++.+...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~  121 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKK  121 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHH
Confidence            88899999999999999999988887 4454443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.14  E-value=5.3e-06  Score=72.40  Aligned_cols=58  Identities=3%  Similarity=-0.095  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC------CC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH------ME-RY-PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~------~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ++..+...|.+.|++++|.+.|++..      -. |+ ..++..+...|.+.|++++|.+.+++..
T Consensus       226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44444444444455444444444321      01 22 3344444444444455555544444444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.10  E-value=7.5e-05  Score=64.60  Aligned_cols=148  Identities=8%  Similarity=-0.080  Sum_probs=110.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHhcCCCHHHHHHHhh--ccC---CCC----hhHHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACSTAGMVEEGWLCFN--RIR---SPK----VTHHALMVS   70 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~~~g~~~~a~~l~~--~g~---~p~----~~~~~~li~   70 (282)
                      .+...|++++|...+++... ..-..+..    +++.+-..+...|++++|.+.++  ..+   .++    ..++..+..
T Consensus        23 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            35678999999999999776 43222222    45566667888999999999998  111   111    234677888


Q ss_pred             HHHccCChHHHHHHHHhcC------CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----ChhHHHHHH
Q 043686           71 VLARAGLFDEARIFIQEYH------ME---RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL-----SAENYIMLS  135 (282)
Q Consensus        71 ~~~~~g~~~~A~~l~~~m~------~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-----~~~~~~~Li  135 (282)
                      .|...|++++|.+.+++..      ..   |. ..+++.+...|...|++++|.+.+++.....|.     ...++..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            8999999999999998742      11   33 456777888999999999999999999865442     234678888


Q ss_pred             HHHHHcCchhhhhcccc
Q 043686          136 NWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~~  152 (282)
                      ..|...|++++|...+.
T Consensus       182 ~~~~~~g~~~~A~~~l~  198 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLN  198 (373)
T ss_dssp             HHHHHHTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            99999999999988443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.09  E-value=5.3e-06  Score=72.41  Aligned_cols=150  Identities=11%  Similarity=0.016  Sum_probs=111.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhC---C-CCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKS---S-IEI-DPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~---g-~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l   68 (282)
                      ..|...|++++|+..|.+..+-.   + ..| ...+++.+-..|...|++++|.+.|+        .+-.+. ..++..|
T Consensus       149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  228 (378)
T 3q15_A          149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI  228 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            35778899999999999865411   1 111 13467788889999999999999998        222222 4578889


Q ss_pred             HHHHHccCChHHHHHHHHhcC------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCChhHHHHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK-----PLSAENYIMLSN  136 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----p~~~~~~~~Li~  136 (282)
                      ...|.+.|++++|.+.|++..      ..|+ ..++..+...|.+.|++++|...+++..++.     |.....+..|-.
T Consensus       229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~  308 (378)
T 3q15_A          229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA  308 (378)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999998742      2444 6788999999999999999999999998652     323345666667


Q ss_pred             HHHHcCc---hhhhhcccc
Q 043686          137 WYAAEAK---WDVVNQAYS  152 (282)
Q Consensus       137 ~y~~~g~---~~~A~~~~~  152 (282)
                      .|...++   +.+|...+.
T Consensus       309 ly~~~~~~~~~~~al~~~~  327 (378)
T 3q15_A          309 VYKETVDERKIHDLLSYFE  327 (378)
T ss_dssp             HHSSSCCHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHH
Confidence            7777777   566655443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.09  E-value=1.5e-05  Score=57.35  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-------hhHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS-------AENYI  132 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~-------~~~~~  132 (282)
                      ...|..+...|.+.|++++|...|++.. ..| +..+|..+...|...|++++|...+++.....|.+       ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            4578889999999999999999999854 344 58889999999999999999999999999776644       67888


Q ss_pred             HHHHHHHHcCchhhhhcccce
Q 043686          133 MLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       133 ~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      .+...|.+.|++++|...+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHH
Confidence            899999999998888765443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.08  E-value=1.2e-05  Score=80.27  Aligned_cols=127  Identities=15%  Similarity=0.190  Sum_probs=84.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      ++-+.|++++|++-|.+-       -|...|.-++.+|.+.|++++|.+.+.  ....|+....+.++.+|+|.+++++.
T Consensus      1114 Aql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A         1114 AQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred             HHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence            566677888888887542       355667777888888888888888887  33445544555577777777777754


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           82 RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        82 ~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ....   . .|+...|..+-..|...|++++|..+|...        ..|..+...|.+.|++++|.+
T Consensus      1187 e~fI---~-~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A         1187 EEFI---N-GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred             HHHH---h-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence            4442   2 455556666666677777777777777653        366666666666666666665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.07  E-value=1.2e-05  Score=58.39  Aligned_cols=94  Identities=12%  Similarity=-0.030  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC
Q 043686           34 FAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHV  108 (282)
Q Consensus        34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g  108 (282)
                      +..+-..+.+.|++++|...|+  ....| +...|..+-.+|.+.|+.++|...|++.. ..|+ ...|..+...|.+.|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            3445567888999999999999  55666 57788899999999999999999999854 5675 889999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCCC
Q 043686          109 QVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus       109 ~~~~A~~~~~~m~~~~p~~  127 (282)
                      ++++|...|++..+..|.+
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            9999999999999888854

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.06  E-value=5.9e-06  Score=65.20  Aligned_cols=117  Identities=4%  Similarity=-0.155  Sum_probs=86.9

Q ss_pred             HHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-H----------------H
Q 043686           37 VLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-P----------------E   95 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~----------------~   95 (282)
                      .+......|.++++.+.|+  ..-.+ ....+..+...|.+.|++++|.+.|++.. ..|+ .                .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            3444556688888888888  21122 35567788899999999999999999853 3332 2                7


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +|..+..+|.+.|++++|...+++...+.|+++..+..+..+|...|++++|...+..
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999998765443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.05  E-value=4.9e-05  Score=51.23  Aligned_cols=81  Identities=17%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      ...+..+...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|++++|.+.|++.....|.++..+..+...|.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            5677888899999999999999999854 445 57889999999999999999999999999999988888888888776


Q ss_pred             HcC
Q 043686          140 AEA  142 (282)
Q Consensus       140 ~~g  142 (282)
                      +.|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.05  E-value=1.4e-05  Score=67.11  Aligned_cols=94  Identities=7%  Similarity=-0.078  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHh
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRI  106 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~  106 (282)
                      ..+..+-..+.+.|++++|...|+  ....| +...|..+...|.+.|++++|.+.+++.. ..|+ ...|+.+..+|.+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344444445555555555555555  22333 34455555555555555555555555532 3343 4455555555555


Q ss_pred             cCChhHHHHHHHHHHhcCC
Q 043686          107 HVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus       107 ~g~~~~A~~~~~~m~~~~p  125 (282)
                      .|++++|.+.|++...+.|
T Consensus        85 ~g~~~~A~~~~~~al~l~p  103 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAK  103 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCc
Confidence            5555555555555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.04  E-value=6.5e-06  Score=74.62  Aligned_cols=113  Identities=8%  Similarity=-0.090  Sum_probs=90.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~   78 (282)
                      ..|.+.|++++|++.|++..+   ..|+ ..+|..+-.++.+.|++++|.+.++  ..+.|+ ...|..+..+|.+.|++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            356789999999999999887   3454 6788889999999999999999999  556664 77899999999999999


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHH--HHhcCChhHHHHHHH
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEG--CRIHVQVKTGKRVID  118 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~  118 (282)
                      ++|.+.|++.. ..|+ ..++..+..+  +.+.|++++|.+.++
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999854 4454 4566666665  888999999999999

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.03  E-value=2.1e-05  Score=66.67  Aligned_cols=146  Identities=12%  Similarity=-0.022  Sum_probs=110.9

Q ss_pred             hcCChHHHHHHHHHhHHh-C----CCCCCHH----HHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686            7 LHGQRELGLSLFSELEKK-S----SIEIDPL----TFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM   68 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~-~----g~~p~~~----ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l   68 (282)
                      ..|++++|.+++++..+. .    +..|+..    .|......|...|++++|.+.|.        .+-.+. ..+|+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l   82 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA   82 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            367889999999876541 1    1235543    67777788999999999999998        222122 4588899


Q ss_pred             HHHHHccCChHHHHHHHHhcC------CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------hhHHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH------MERY--PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS------AENYIML  134 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~------~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~------~~~~~~L  134 (282)
                      ...|.+.|++++|.+.|++..      -.|.  ..+|+.+-..|.+ |++++|.+.|++...+.|..      ..+++.+
T Consensus        83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l  161 (307)
T 2ifu_A           83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA  161 (307)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            999999999999999998732      1222  4678889999988 99999999999998654321      3678889


Q ss_pred             HHHHHHcCchhhhhcccce
Q 043686          135 SNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       135 i~~y~~~g~~~~A~~~~~~  153 (282)
                      ...|.+.|++++|...+..
T Consensus       162 g~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          162 SRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            9999999999999985443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.00  E-value=5.2e-06  Score=59.76  Aligned_cols=78  Identities=10%  Similarity=0.019  Sum_probs=65.2

Q ss_pred             ccCChHHHHHHHHhcC-C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686           74 RAGLFDEARIFIQEYH-M---ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN  148 (282)
Q Consensus        74 ~~g~~~~A~~l~~~m~-~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~  148 (282)
                      ..|++++|.+.|++.. .   .|+ ..+|..+...|.+.|++++|.+.|++..+..|+++..+..+...|.+.|++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            4688999999999854 4   365 6789999999999999999999999999999999999999999999999999986


Q ss_pred             ccc
Q 043686          149 QAY  151 (282)
Q Consensus       149 ~~~  151 (282)
                      ..+
T Consensus        82 ~~~   84 (117)
T 3k9i_A           82 ELL   84 (117)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            644

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.99  E-value=2.6e-05  Score=59.28  Aligned_cols=92  Identities=9%  Similarity=-0.050  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-C------------------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-M------------------ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~------------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ...+......+.+.|++++|.+.|.+.. .                  .|. ..+|..+..+|.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3467778889999999999999998843 2                  333 5689999999999999999999999999


Q ss_pred             hcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          122 ELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       122 ~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +++|+++..|..+..+|...|++++|...+..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence            99999999999999999999999999775543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.98  E-value=1.5e-05  Score=68.78  Aligned_cols=132  Identities=13%  Similarity=0.029  Sum_probs=65.1

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARI   83 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~   83 (282)
                      .|.+.|++++|+..|.+...   +.|+...       +...|+.+++...+.      ...|..+..+|.+.|++++|.+
T Consensus       188 ~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          188 SLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHcCCHHHHHH
Confidence            46678999999999999776   4566542       223333333333222      1256666667777777777777


Q ss_pred             HHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH-HcCchhhhhccc
Q 043686           84 FIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA-AEAKWDVVNQAY  151 (282)
Q Consensus        84 l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~-~~g~~~~A~~~~  151 (282)
                      .|++.. ..| +...|..+-.+|...|++++|.+.|++..++.|++...+..|..... ..+..+++...+
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~  322 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY  322 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776643 344 36667777777777777777777777776666666566655555522 233444444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.98  E-value=3.7e-05  Score=64.50  Aligned_cols=93  Identities=10%  Similarity=-0.096  Sum_probs=83.7

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...+..+...|.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|.+.+++..++.|+++..+..+..+|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46678889999999999999999999854 456 5889999999999999999999999999999999999999999999


Q ss_pred             HHcCchhhhhcccce
Q 043686          139 AAEAKWDVVNQAYSW  153 (282)
Q Consensus       139 ~~~g~~~~A~~~~~~  153 (282)
                      ...|++++|...+..
T Consensus        83 ~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           83 LEMESYDEAIANLQR   97 (281)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            999999999985543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.97  E-value=2.9e-05  Score=56.21  Aligned_cols=89  Identities=15%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-CCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---hhHHHHHHH
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-MERY-P---EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS---AENYIMLSN  136 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~---~~~~~~Li~  136 (282)
                      +..+...+.+.|++++|.+.|++.. ..|+ .   .+|..+..+|.+.|++++|...|++.....|++   +.++..+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            3446677889999999999999864 3454 3   588889999999999999999999999999987   677888999


Q ss_pred             HHHHcCchhhhhcccce
Q 043686          137 WYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       137 ~y~~~g~~~~A~~~~~~  153 (282)
                      .|.+.|++++|...+..
T Consensus        85 ~~~~~g~~~~A~~~~~~  101 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQ  101 (129)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            99999998888765544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.93  E-value=3.5e-05  Score=62.11  Aligned_cols=123  Identities=7%  Similarity=-0.019  Sum_probs=92.1

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHH----HHHHHHHHHh------------------cCCCHHHHHHHhh--ccC
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPL----TFAAVLHACS------------------TAGMVEEGWLCFN--RIR   58 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~----ty~~ll~a~~------------------~~g~~~~a~~l~~--~g~   58 (282)
                      .+|.+.|++++|+..|++..+   ..|+..    .+-.+-.++.                  ..|+.++|...|+  ...
T Consensus        49 ~~~~~~~~~~~A~~~~~~~l~---~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  125 (225)
T 2yhc_A           49 YAYYKNADLPLAQAAIDRFIR---LNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG  125 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCHHHHHHHHHHHHH---HCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence            467889999999999999887   234431    2322222332                  3688999999999  555


Q ss_pred             CCCh-hHH-----------------HHHHHHHHccCChHHHHHHHHhcC-CCCC----HHHHHHHHHHHHhcCChhHHHH
Q 043686           59 SPKV-THH-----------------ALMVSVLARAGLFDEARIFIQEYH-MERY----PEVLRALLEGCRIHVQVKTGKR  115 (282)
Q Consensus        59 ~p~~-~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~-~~p~----~~~~~~li~~~~~~g~~~~A~~  115 (282)
                      .|+. ..+                 -.+...|.+.|++++|...|+++. ..|+    ...+..+..+|.+.|+.++|.+
T Consensus       126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~  205 (225)
T 2yhc_A          126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK  205 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence            5653 233                 245667889999999999999865 4555    2578889999999999999999


Q ss_pred             HHHHHHhcCCCCh
Q 043686          116 VIDQLCELKPLSA  128 (282)
Q Consensus       116 ~~~~m~~~~p~~~  128 (282)
                      .++.+....|+++
T Consensus       206 ~~~~l~~~~~~~~  218 (225)
T 2yhc_A          206 VAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHCCSCCC
T ss_pred             HHHHHHhhCCCch
Confidence            9999988888653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.93  E-value=3.3e-05  Score=58.99  Aligned_cols=88  Identities=9%  Similarity=-0.072  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhc------
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-------------PEVLRALLEGCRIHVQVKTGKRVIDQLCEL------  123 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------  123 (282)
                      .+......+.+.|++++|.+.|++.- +.|+             ...|+.+-.++.+.|++++|...+++..++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            44556677788888999998888743 4444             338999999999999999999999999999      


Q ss_pred             -CCCChhHH----HHHHHHHHHcCchhhhhccc
Q 043686          124 -KPLSAENY----IMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       124 -~p~~~~~~----~~Li~~y~~~g~~~~A~~~~  151 (282)
                       +|++...|    ...-.+|...|++++|...+
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y  125 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  125 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence             99998899    99999999999999997644

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.93  E-value=0.00014  Score=72.74  Aligned_cols=159  Identities=9%  Similarity=0.005  Sum_probs=82.9

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      +..|.+.|++++|++.|..-++   ..|++...+.+..+|++.+++++......   .|+...|..+.+.|-..|++++|
T Consensus      1141 a~~~~~lGkyEEAIeyL~mArk---~~~e~~Idt~LafaYAKl~rleele~fI~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A         1141 VQAANTSGNWEELVKYLQMARK---KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh---hcccccccHHHHHHHHhhcCHHHHHHHHh---CCCHHHHHHHHHHHHhcCCHHHH
Confidence            3455566666666666665444   22333333346666666666654332222   23334444566666666666666


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccccee-eecCeE
Q 043686           82 RIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWI-EFRNKV  160 (282)
Q Consensus        82 ~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~-~~~~~~  160 (282)
                      ..+|....      .|..+..+|++.|++++|.+.+++.     .++.+|.-+-.+|...|++..|....-.+ ...+..
T Consensus      1215 ~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deL 1283 (1630)
T 1xi4_A         1215 KLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 1283 (1630)
T ss_pred             HHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHH
Confidence            66666643      5666666666666666666666655     23356666666666666666665522111 011111


Q ss_pred             EEEecCCCCCCChHHHH
Q 043686          161 HVFGTGDVSCPRSEGIF  177 (282)
Q Consensus       161 ~~~i~~~~~~~~~~~a~  177 (282)
                      ..++.-|.+.|.+++|+
T Consensus      1284 eeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A         1284 EELINYYQDRGYFEELI 1300 (1630)
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            23334455566666665

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.92  E-value=1.9e-05  Score=68.19  Aligned_cols=90  Identities=6%  Similarity=-0.112  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCCH------------------HHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERYP------------------EVLRALLEGCRIHVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~~------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  124 (282)
                      .+..+...|.+.|++++|.+.|++.. ..|+.                  .+|+.+-.+|.+.|++++|...|++..++.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44555555556666666666665532 33432                  288999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          125 PLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      |+++..|..+..+|...|++++|...+..
T Consensus       261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~  289 (338)
T 2if4_A          261 EKNPKALFRRGKAKAELGQMDSARDDFRK  289 (338)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999985443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.92  E-value=2.4e-05  Score=58.26  Aligned_cols=119  Identities=9%  Similarity=0.007  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCC---CC----hhHHHHHHHHHHccCChHHHHHHHHhcC----CCCC----H
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRS---PK----VTHHALMVSVLARAGLFDEARIFIQEYH----MERY----P   94 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~---p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~p~----~   94 (282)
                      .++..+-..+...|++++|...++  ..+.   ++    ..++..+...|...|++++|.+.+++..    -.++    .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            356666677778888888888887  1111   11    2467788888888999999998888743    1122    4


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---C---CChhHHHHHHHHHHHcCchhhhhcc
Q 043686           95 EVLRALLEGCRIHVQVKTGKRVIDQLCELK---P---LSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---p---~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      .++..+...|...|++++|.+.+++.....   +   ....++..+...|...|++++|...
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  151 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  151 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence            567788888889999999999998877431   1   1235677788888888888888653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.90  E-value=0.00013  Score=65.02  Aligned_cols=121  Identities=12%  Similarity=0.009  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh---------cc--CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-------
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN---------RI--RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-------   89 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~---------~g--~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-------   89 (282)
                      .....||.|-..+...|+.++|.+.|+         .+  ..|+ .++|+.+...|...|++++|...+++..       
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            345678988889999999999999997         11  2343 6789999999999999999999988742       


Q ss_pred             --CCCC-HHHHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc---Cchhhhhc
Q 043686           90 --MERY-PEVLRALLEGCRIH--VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE---AKWDVVNQ  149 (282)
Q Consensus        90 --~~p~-~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~---g~~~~A~~  149 (282)
                        ..++ ..+|+.+-.++.+.  +++++|.+.|++..+++|+++..+..+...+.+.   ++.++|..
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~  196 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAID  196 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence              1233 56777776666554  4799999999999999999988888777775544   45555554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.89  E-value=3.1e-05  Score=59.18  Aligned_cols=98  Identities=13%  Similarity=-0.059  Sum_probs=73.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHhh--ccCCCC-------------hhHHHHHHHHHHccCChHHHHHHHHhcC-C-------
Q 043686           34 FAAVLHACSTAGMVEEGWLCFN--RIRSPK-------------VTHHALMVSVLARAGLFDEARIFIQEYH-M-------   90 (282)
Q Consensus        34 y~~ll~a~~~~g~~~~a~~l~~--~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~-~-------   90 (282)
                      +...-..+.+.|++++|.+.|+  ..+.|+             ...|+.+-.++.+.|++++|...+++.- +       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3334445556666777766666  333333             2378888888889999988888887743 5       


Q ss_pred             CCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686           91 ERY-PEVL----RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY  131 (282)
Q Consensus        91 ~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~  131 (282)
                      .|| ...|    +..-.++...|++++|...|++..++.|.+...+
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~  139 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  139 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            887 6788    9999999999999999999999999888664433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.87  E-value=0.00033  Score=60.47  Aligned_cols=145  Identities=10%  Similarity=0.029  Sum_probs=87.6

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCC--C--CHHHHHHHHHHHhcCCCHHHHHHHhh----ccCCCCh-hHHH-----HHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIE--I--DPLTFAAVLHACSTAGMVEEGWLCFN----RIRSPKV-THHA-----LMV   69 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~--p--~~~ty~~ll~a~~~~g~~~~a~~l~~----~g~~p~~-~~~~-----~li   69 (282)
                      .|...|++++|...+++... ..-.  |  ...+|..+-..+...|++++|...++    ..-.++. ..+.     ..+
T Consensus       144 ~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T 1hz4_A          144 LLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV  222 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHH-HhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence            45667888888888887654 2111  1  23456666667777888888888777    1111111 1111     233


Q ss_pred             HHHHccCChHHHHHHHHhcC-CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CC-hhHHHHHHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH-MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKP-----LS-AENYIMLSNW  137 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p-----~~-~~~~~~Li~~  137 (282)
                      ..+...|+.++|.+.+++.. ..|.     ..++..+...+...|++++|.+.+++.....+     .+ ...+..+...
T Consensus       223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~  302 (373)
T 1hz4_A          223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL  302 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence            44667888888888887754 2221     33566677777888888888888887763211     11 1255566677


Q ss_pred             HHHcCchhhhhc
Q 043686          138 YAAEAKWDVVNQ  149 (282)
Q Consensus       138 y~~~g~~~~A~~  149 (282)
                      |...|+.++|..
T Consensus       303 ~~~~g~~~~A~~  314 (373)
T 1hz4_A          303 YWQAGRKSDAQR  314 (373)
T ss_dssp             HHHHTCHHHHHH
T ss_pred             HHHhCCHHHHHH
Confidence            777777777754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.82  E-value=0.00015  Score=65.86  Aligned_cols=114  Identities=10%  Similarity=-0.015  Sum_probs=76.2

Q ss_pred             HhcCCCHHHHHHHhh-------c---cCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHH
Q 043686           41 CSTAGMVEEGWLCFN-------R---IRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH---------MERY-PEVLRA   99 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~-------~---g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~   99 (282)
                      +...|++++|..+++       .   .-.|+ ..+++.|...|...|++++|+.++++..         -.|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            345677777777766       1   12333 4577788888888888888888777632         2344 567888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh-----cCCCCh---hHHHHHHHHHHHcCchhhhhccccee
Q 043686          100 LLEGCRIHVQVKTGKRVIDQLCE-----LKPLSA---ENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       100 li~~~~~~g~~~~A~~~~~~m~~-----~~p~~~---~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      |-..|...|++++|+.++++..+     +.|+++   .+.+.|-..+.+.+++.+|+..+..+
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888887762     456553   33456667777777777777755443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.81  E-value=5.1e-05  Score=56.45  Aligned_cols=120  Identities=8%  Similarity=-0.082  Sum_probs=91.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCC-CCCCH----HHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSS-IEIDP----LTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g-~~p~~----~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l   68 (282)
                      ..|...|++++|++.|.+..+ .. -.++.    .++..+-..+...|++++|.+.++        .+-.+. ..++..+
T Consensus        17 ~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l   95 (164)
T 3ro3_A           17 NTHYLLGNFRDAVIAHEQRLL-IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL   95 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHH-HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence            356788999999999999765 21 01221    467778888999999999999998        111111 4577888


Q ss_pred             HHHHHccCChHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686           69 VSVLARAGLFDEARIFIQEYH----MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCEL  123 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  123 (282)
                      ...|...|++++|.+.+++..    -.++    ..++..+...|...|++++|.+.+++..++
T Consensus        96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999999999999998743    1112    467888888999999999999999998754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.80  E-value=5.9e-05  Score=68.49  Aligned_cols=78  Identities=10%  Similarity=0.044  Sum_probs=61.1

Q ss_pred             HHccCChHHHHHHHHhcC------C---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC---hhHHHH
Q 043686           72 LARAGLFDEARIFIQEYH------M---ERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS---AENYIM  133 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~------~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~---~~~~~~  133 (282)
                      +...|++++|+.++++..      +   .|+ ..+++.|...|...|++++|+.++++...     +.|++   ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            346788999988887631      2   344 56899999999999999999999998772     34443   466888


Q ss_pred             HHHHHHHcCchhhhhc
Q 043686          134 LSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~  149 (282)
                      |...|...|++++|+.
T Consensus       399 La~~~~~~G~~~eA~~  414 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHG  414 (490)
T ss_dssp             HHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHH
Confidence            8899999999999988

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.77  E-value=0.00019  Score=60.11  Aligned_cols=117  Identities=10%  Similarity=-0.005  Sum_probs=92.2

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCC---CCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--c---cCCCC-----hhHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSS---IEID--PLTFAAVLHACSTAGMVEEGWLCFN--R---IRSPK-----VTHHALM   68 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g---~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~---g~~p~-----~~~~~~l   68 (282)
                      .|...|++++|+..|.+..+ ..   ..+.  ..+|+.+-..|...|++++|...|+  .   ...|+     ..+|+.+
T Consensus       124 ~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl  202 (293)
T 2qfc_A          124 YVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH  202 (293)
T ss_dssp             HHHTSSCHHHHHHHHHHHHT-TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence            45677899999999999764 21   1122  4588889999999999999999998  1   22232     2588999


Q ss_pred             HHHHHccCChHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH-MERY-------PEVLRALLEGCRIHVQVKTG-KRVIDQLC  121 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-~~p~-------~~~~~~li~~~~~~g~~~~A-~~~~~~m~  121 (282)
                      ...|.+.|++++|.+.|++.. +.++       ..+|..+...|.+.|+.++| ...+++..
T Consensus       203 g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            999999999999999998743 1111       67899999999999999999 88888876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.73  E-value=0.00024  Score=56.72  Aligned_cols=124  Identities=10%  Similarity=0.022  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCC-ChhHHHHHHHHHHccC----ChHHHHHHHH
Q 043686           12 ELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP-KVTHHALMVSVLARAG----LFDEARIFIQ   86 (282)
Q Consensus        12 ~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p-~~~~~~~li~~~~~~g----~~~~A~~l~~   86 (282)
                      .+|++.|++..+ .   -+...+..|-..+...+++++|.+.|+....+ +...+..|-..|.+ |    +.++|.+.|+
T Consensus         3 ~eA~~~~~~aa~-~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAE-A---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHH-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHH-C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            468888999887 4   46778888888888899999999999922222 56778888888888 7    8999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 043686           87 EYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPL--SAENYIMLSNWYAA  140 (282)
Q Consensus        87 ~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~--~~~~~~~Li~~y~~  140 (282)
                      +.--.-+..++..|-..|..    .+++++|.+.|++..+..|.  ++.++..|-.+|..
T Consensus        78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            86413357888889888887    88999999999999988772  36788889888877

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.71  E-value=0.00094  Score=60.18  Aligned_cols=136  Identities=7%  Similarity=-0.092  Sum_probs=64.9

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCC-CChhHHHHHHHHHHc----cCCh
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFNRIRS-PKVTHHALMVSVLAR----AGLF   78 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~-p~~~~~~~li~~~~~----~g~~   78 (282)
                      .++.++|++.|++..+ .|   +...+..|-..|..    .++.++|...|+.-.. -+...+..|...|..    .++.
T Consensus        92 ~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~  167 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAAL-KG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY  167 (490)
T ss_dssp             CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence            4555555555555544 32   33334444444444    4555555555550000 123344444444544    4555


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhc
Q 043686           79 DEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQ  149 (282)
Q Consensus        79 ~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~  149 (282)
                      ++|.+.|++..-..+..++..|-..|.+    .++.++|.+.|++.....  ++.++..|..+|..    .++.++|..
T Consensus       168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~  244 (490)
T 2xm6_A          168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRV  244 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            5555555543212244555555555554    555555555555554332  23455555555554    455555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00016  Score=63.58  Aligned_cols=182  Identities=10%  Similarity=-0.018  Sum_probs=123.6

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCC-C---------------HHHHHHHHHHHhcCCCHHHHHHHhh-----ccCCCCh
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEI-D---------------PLTFAAVLHACSTAGMVEEGWLCFN-----RIRSPKV   62 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p-~---------------~~ty~~ll~a~~~~g~~~~a~~l~~-----~g~~p~~   62 (282)
                      .+.+.|++++|++.|.+..+ ..-.. +               ...+..+...|.+.|++++|.+.+.     .+-.++.
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLD-KDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH-SCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHh-hCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            46789999999999999876 32111 1               1247788899999999999999998     2222222


Q ss_pred             ----hHHHHHHHHHHccCChHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 043686           63 ----THHALMVSVLARAGLFDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL------K  124 (282)
Q Consensus        63 ----~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~  124 (282)
                          .+.+.+-..+...|+.+.|.+++++..       ..+. ..++..|...|...|++++|..++++....      .
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                233344445556789999999987742       2333 568889999999999999999999998731      2


Q ss_pred             CCChhHHHHHHHHHHHcCchhhhhccccee-------eec----CeE-EEEecCCCCCCChHHHHHHHHHHHHH
Q 043686          125 PLSAENYIMLSNWYAAEAKWDVVNQAYSWI-------EFR----NKV-HVFGTGDVSCPRSEGIFWELQSLMKK  186 (282)
Q Consensus       125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~-------~~~----~~~-~~~i~~~~~~~~~~~a~~~~~~l~~~  186 (282)
                      |..+.+|..++..|...|++++|...+...       +..    ..+ ..+...+...++.++|.......|+.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            323568889999999999999998743221       110    001 12223356667777776444444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.70  E-value=0.00027  Score=59.24  Aligned_cols=113  Identities=5%  Similarity=-0.037  Sum_probs=79.8

Q ss_pred             HHHHHhcCCCHHHHHHHhh-----ccCCCCh----hHHHHHHHHHHccCChHHHHHHHHhcC----CCCC----HHHHHH
Q 043686           37 VLHACSTAGMVEEGWLCFN-----RIRSPKV----THHALMVSVLARAGLFDEARIFIQEYH----MERY----PEVLRA   99 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~-----~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~----~~p~----~~~~~~   99 (282)
                      .+..+...|++++|..+++     ....|+.    ..|..+...|...|++++|.+.|++..    -.+|    ..+|+.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3566778889999998888     2223332    234457777778889999999888742    1223    346888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh---cC----CCChhHHHHHHHHHHHcCchhhhhc
Q 043686          100 LLEGCRIHVQVKTGKRVIDQLCE---LK----PLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       100 li~~~~~~g~~~~A~~~~~~m~~---~~----p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      +...|...|++++|...|+++..   -.    |....+|..+...|.+.|++++|..
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~  217 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            88889999999999999998873   11    1123467788888888888888755

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.67  E-value=0.0012  Score=59.54  Aligned_cols=174  Identities=6%  Similarity=-0.086  Sum_probs=126.9

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHhhccCC-CChhHHHHHHHHHHc----cCCh
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACST----AGMVEEGWLCFNRIRS-PKVTHHALMVSVLAR----AGLF   78 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~----~g~~~~a~~l~~~g~~-p~~~~~~~li~~~~~----~g~~   78 (282)
                      .+++++|+..|++..+ .|   +...+..|-..|..    .++.++|.+.|+.-.. .+...+..|-..|..    .++.
T Consensus        56 ~~~~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAE-QG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence            7899999999999887 54   56677777777887    8999999999991111 256677778888888    7899


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhcc
Q 043686           79 DEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQA  150 (282)
Q Consensus        79 ~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~~  150 (282)
                      ++|.+.|++..-.-+...+..|-..|..    .++.++|.+.|++..+.  .++.++..|..+|..    .++.++|.+.
T Consensus       132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  209 (490)
T 2xm6_A          132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW  209 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            9999999986413357788888888887    78999999999998765  356889999999988    8899999885


Q ss_pred             cceeeecCeE-------EEEecCCCCCCChHHHHHHHHHHHHHHHhCC
Q 043686          151 YSWIEFRNKV-------HVFGTGDVSCPRSEGIFWELQSLMKKMEGDS  191 (282)
Q Consensus       151 ~~~~~~~~~~-------~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g  191 (282)
                      +...-..+..       ..+..+....++.++|.    .+|++-.+.|
T Consensus       210 ~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~----~~~~~a~~~~  253 (490)
T 2xm6_A          210 YRKSATSGDELGQLHLADMYYFGIGVTQDYTQSR----VLFSQSAEQG  253 (490)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH----HHHHHHHTTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH----HHHHHHHHCC
Confidence            5442222211       11222333355666666    6666555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.67  E-value=0.00046  Score=57.79  Aligned_cols=118  Identities=6%  Similarity=-0.056  Sum_probs=93.4

Q ss_pred             HHHHHhcCCCHHHHHHHhh--ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCh
Q 043686           37 VLHACSTAGMVEEGWLCFN--RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERY----PEVLRALLEGCRIHVQV  110 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~----~~~~~~li~~~~~~g~~  110 (282)
                      +...+...|++++|.++|+  .-..|+....-.+-..+.+.+++++|+..|+...-.|+    ..++..+-.++.+.|++
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~  187 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF  187 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence            4556788999999999999  44557554667777789999999999999987552332    34788899999999999


Q ss_pred             hHHHHHHHHHHh-cC-CC-ChhHHHHHHHHHHHcCchhhhhccccee
Q 043686          111 KTGKRVIDQLCE-LK-PL-SAENYIMLSNWYAAEAKWDVVNQAYSWI  154 (282)
Q Consensus       111 ~~A~~~~~~m~~-~~-p~-~~~~~~~Li~~y~~~g~~~~A~~~~~~~  154 (282)
                      ++|++.|++... -. |. .+.....+..++.+.|+.++|...+...
T Consensus       188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999873 22 64 3346677888899999999998877665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.63  E-value=0.00017  Score=51.29  Aligned_cols=56  Identities=11%  Similarity=0.020  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ...|..+...|.+.|++++|...|++.....|++...|..+...|.+.|++++|..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            44444444455555555555555555554455444444455555555555444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.62  E-value=0.00014  Score=65.48  Aligned_cols=116  Identities=6%  Similarity=-0.073  Sum_probs=94.5

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC----------------HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-Chh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID----------------PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVT   63 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~----------------~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~   63 (282)
                      ..|.+.|++++|+..|++..+   +.|+                ...|..+-.++.+.|++++|...++  ..+.| +..
T Consensus       276 ~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~  352 (457)
T 1kt0_A          276 TVYFKGGKYMQAVIQYGKIVS---WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK  352 (457)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHH---HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence            357789999999999999876   3344                4788889999999999999999999  55566 478


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKR-VIDQLC  121 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~-~~~~m~  121 (282)
                      .|..+-.+|.+.|++++|.+.|++.. +.|+ ..+|..+...+.+.++.++|.+ .++.|.
T Consensus       353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999864 6775 6788999999999999888764 455554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.61  E-value=0.0002  Score=55.84  Aligned_cols=110  Identities=16%  Similarity=0.004  Sum_probs=82.5

Q ss_pred             hcCCCHHHHHHHhh--ccCC-CChhHHHHHHHHHHccCChHHHHHHHHhcC-------CCC-CHHHHHHHHHHHHhcCCh
Q 043686           42 STAGMVEEGWLCFN--RIRS-PKVTHHALMVSVLARAGLFDEARIFIQEYH-------MER-YPEVLRALLEGCRIHVQV  110 (282)
Q Consensus        42 ~~~g~~~~a~~l~~--~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~p-~~~~~~~li~~~~~~g~~  110 (282)
                      ...|++++|.++++  .+.. ....++..+...|...|++++|.+.|++..       ..| ...+++.+-..|...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            46799999999444  2322 246788999999999999999999998843       112 256788899999999999


Q ss_pred             hHHHHHHHHHHhc---CCCC----hhHHHHHHHHHHHcCchhhhhccc
Q 043686          111 KTGKRVIDQLCEL---KPLS----AENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       111 ~~A~~~~~~m~~~---~p~~----~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ++|.+.+++...+   .|++    ...+..+...|...|++++|...+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY  130 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999998854   4422    345778888999999988886533

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.59  E-value=4.5e-05  Score=58.17  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC----------hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC--
Q 043686           46 MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL----------FDEARIFIQEYH-MERY-PEVLRALLEGCRIHV--  108 (282)
Q Consensus        46 ~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g--  108 (282)
                      .+++|...++  ..+.| +...|+.+-.++.+.|+          +++|...|++.- +.|+ ..+|+.+-.+|.+.|  
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l   96 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   96 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence            3444444444  33334 34444445445544443          568888888854 6776 778999999998764  


Q ss_pred             ---------ChhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 043686          109 ---------QVKTGKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus       109 ---------~~~~A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                               ++++|.+.|++..+++|++ ..|...+..
T Consensus        97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~  133 (158)
T 1zu2_A           97 TPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEM  133 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHH
T ss_pred             CcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Confidence                     8999999999999999987 555444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.54  E-value=0.00027  Score=50.12  Aligned_cols=93  Identities=8%  Similarity=-0.078  Sum_probs=64.6

Q ss_pred             HHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686           50 GWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        50 a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  124 (282)
                      |.+.|+  ....| +...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+...|.+.|++++|...|++...+.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            344444  33445 46677888888888899999999888754 4554 7788888889999999999999999888765


Q ss_pred             CC--ChhHHHHHHHHHHHcC
Q 043686          125 PL--SAENYIMLSNWYAAEA  142 (282)
Q Consensus       125 p~--~~~~~~~Li~~y~~~g  142 (282)
                      |.  +......+...+.+.+
T Consensus        84 ~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           84 QSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHhc
Confidence            52  3334444444444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.50  E-value=0.00037  Score=48.45  Aligned_cols=62  Identities=8%  Similarity=-0.114  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686           62 VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL  123 (282)
Q Consensus        62 ~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  123 (282)
                      ...+..+...|.+.|++++|.+.|++.. ..|+ ..+|..+-.+|.+.|++++|.+.|++..++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4445555555555555555555555532 3332 445555555555555555555555555533

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.45  E-value=0.00039  Score=62.06  Aligned_cols=88  Identities=7%  Similarity=-0.140  Sum_probs=70.1

Q ss_pred             cCCCHHHHHHHhh-------cc---CCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHHHH
Q 043686           43 TAGMVEEGWLCFN-------RI---RSPK-VTHHALMVSVLARAGLFDEARIFIQEYH---------MERY-PEVLRALL  101 (282)
Q Consensus        43 ~~g~~~~a~~l~~-------~g---~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~li  101 (282)
                      +.|++++|..+++       .-   -.|+ ..+++.|..+|...|++++|+.++++..         -.|+ ..+||.|-
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4578899998887       22   2343 5689999999999999999999998842         3455 56899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHh-----cCCCChhH
Q 043686          102 EGCRIHVQVKTGKRVIDQLCE-----LKPLSAEN  130 (282)
Q Consensus       102 ~~~~~~g~~~~A~~~~~~m~~-----~~p~~~~~  130 (282)
                      ..|...|++++|+.++++..+     +.|+++.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            999999999999999999873     57776544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.0016  Score=57.11  Aligned_cols=148  Identities=7%  Similarity=-0.032  Sum_probs=108.0

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHH---HHHHHH-HHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLT---FAAVLH-ACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM   68 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~t---y~~ll~-a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l   68 (282)
                      ...|.+.|++++|.+++.+.....+-.++..+   ....+. .+...|..++|.+++.        .+..+. ..++..|
T Consensus        62 ~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l  141 (434)
T 4b4t_Q           62 GQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL  141 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            35788999999999999997651222233322   233333 3445689999999988        333443 4577889


Q ss_pred             HHHHHccCChHHHHHHHHhcC-------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCC----hhHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH-------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCEL---KPLS----AENYIM  133 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~p~~----~~~~~~  133 (282)
                      ...|-..|++++|..++++..       -.|. +.+|..++..|...|++++|..++++....   .|+.    ...+..
T Consensus       142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  221 (434)
T 4b4t_Q          142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLM  221 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Confidence            999999999999999998743       1233 668999999999999999999999998742   2222    245667


Q ss_pred             HHHHHHHcCchhhhhc
Q 043686          134 LSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~  149 (282)
                      +...|...|++++|..
T Consensus       222 ~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          222 SGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHHTTSSSCHHHHHH
T ss_pred             HHHHHHHHHhHHHHHH
Confidence            7777888889888877

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.38  E-value=0.00078  Score=63.57  Aligned_cols=179  Identities=8%  Similarity=-0.046  Sum_probs=123.5

Q ss_pred             hhhcCChHHHH-HHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccC-----------CCC---------
Q 043686            5 YSLHGQRELGL-SLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIR-----------SPK---------   61 (282)
Q Consensus         5 ~~~~g~~~~A~-~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~-----------~p~---------   61 (282)
                      +-+.|+.++|. ++|.+... . ++.+..-|-..+...-+.|++++|+++|+  ...           .|+         
T Consensus       353 ~~~~~~~~~a~r~il~rAi~-~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~  430 (679)
T 4e6h_A          353 QGEKNTDSTVITKYLKLGQQ-C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK  430 (679)
T ss_dssp             HHHHSCCTTHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence            34578888997 99999765 2 33445556667777888899999999999  111           142         


Q ss_pred             ---hhHHHHHHHHHHccCChHHHHHHHHhcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHH
Q 043686           62 ---VTHHALMVSVLARAGLFDEARIFIQEYH-----MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIM  133 (282)
Q Consensus        62 ---~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~  133 (282)
                         ..+|...+....+.|.++.|.++|.+..     ..+.+.+..+.+.-.+ .++.+.|.++|+...+..|+++..|..
T Consensus       431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~  509 (679)
T 4e6h_A          431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINK  509 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence               3468888888888999999999998853     2234555555554322 456999999999999888888888889


Q ss_pred             HHHHHHHcCchhhhhcccceeeecCe--------EEEEecCCCCCCChHHHHHHHHHHHHHHHhC
Q 043686          134 LSNWYAAEAKWDVVNQAYSWIEFRNK--------VHVFGTGDVSCPRSEGIFWELQSLMKKMEGD  190 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~  190 (282)
                      .++.....|+.+.|..+|+.......        ...++.--.++|..+.+.    .+.++|.+.
T Consensus       510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~----~v~~R~~~~  570 (679)
T 4e6h_A          510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR----TLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH----HHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHh
Confidence            99988899999999987766322211        022222223456565554    666666644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.33  E-value=0.0014  Score=44.87  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=54.8

Q ss_pred             HHHHHHccCChHHHHHHHHhcC-CCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686           68 MVSVLARAGLFDEARIFIQEYH-MERY-PE-VLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY  131 (282)
Q Consensus        68 li~~~~~~g~~~~A~~l~~~m~-~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~  131 (282)
                      ....+.+.|++++|.+.|++.. ..|+ .. .|..+-..|.+.|++++|.+.|++..+..|++...+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            4566788999999999999864 4564 67 899999999999999999999999999999887766

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.33  E-value=0.00081  Score=46.63  Aligned_cols=56  Identities=20%  Similarity=0.186  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhc
Q 043686           94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ...|..+...|.+.|++++|.+.|++..+..|+++..|..+..+|.+.|++++|..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~   62 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID   62 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            45555555566666666666666666665566555556666666666666665555

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.32  E-value=0.0017  Score=57.86  Aligned_cols=95  Identities=5%  Similarity=-0.139  Sum_probs=73.9

Q ss_pred             HHHHHhcCCCHHHHHHHhh-------ccCCC---C-hhHHHHHHHHHHccCChHHHHHHHHhcC---------CCCC-HH
Q 043686           37 VLHACSTAGMVEEGWLCFN-------RIRSP---K-VTHHALMVSVLARAGLFDEARIFIQEYH---------MERY-PE   95 (282)
Q Consensus        37 ll~a~~~~g~~~~a~~l~~-------~g~~p---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~---------~~p~-~~   95 (282)
                      .+..+.+.|++++|.++++       .-+.|   + ..+++.|...|...|++++|+.++++..         -.|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3455667889999999887       22223   2 5688999999999999999999998742         3455 57


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCChhHH
Q 043686           96 VLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLSAENY  131 (282)
Q Consensus        96 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~~~~~  131 (282)
                      +++.|-..|...|++++|+.++++..+     +.|+++.+-
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            899999999999999999999999873     577765443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.29  E-value=0.003  Score=56.46  Aligned_cols=134  Identities=8%  Similarity=-0.002  Sum_probs=68.2

Q ss_pred             ChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcC----CCHHHHHHHhhccCCCChhHHHHHHHH-H--HccCChHHHH
Q 043686           10 QRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTA----GMVEEGWLCFNRIRSPKVTHHALMVSV-L--ARAGLFDEAR   82 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~----g~~~~a~~l~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~   82 (282)
                      +.++|++.|++..+ .|. ++...+..|-..|...    ++.++|.++|+.-..-+...+..|-.. |  ...|+.++|.
T Consensus       194 ~~~~A~~~~~~aa~-~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~  271 (452)
T 3e4b_A          194 QQAELLKQMEAGVS-RGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMM  271 (452)
T ss_dssp             HHHHHHHHHHHHHH-TTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred             cHHHHHHHHHHHHH-CCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence            55666666666555 442 2333333344444333    466666666661122234455555554 3  3456666666


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhc
Q 043686           83 IFIQEYHMERYPEVLRALLEGCRIHV-----QVKTGKRVIDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQ  149 (282)
Q Consensus        83 ~l~~~m~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~  149 (282)
                      +.|++.--.-+...++.|-..|. .|     +.++|.+.|++..   |.++..+..|-.+|..    ..+.++|..
T Consensus       272 ~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~  343 (452)
T 3e4b_A          272 KYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALD  343 (452)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            66665331224555555555554 33     6666666666554   4455556666555554    124455544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.29  E-value=0.00073  Score=58.98  Aligned_cols=90  Identities=4%  Similarity=-0.063  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-----------------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-----------------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-----------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  124 (282)
                      ..+..+...|.+.|++++|.+.|++..                 ..|+ ..+|+.+-.+|.+.|++++|.+.+++..++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            347778889999999999999998743                 2333 6789999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686          125 PLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       125 p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      |+++..|..+..+|.+.|++++|...+.
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~  331 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLK  331 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999999999999988866443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0013  Score=45.69  Aligned_cols=90  Identities=12%  Similarity=0.031  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-------HHHH
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-------PEVL   97 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-------~~~~   97 (282)
                      ++...+..+-..+.+.|++++|.+.|+  ....| +...|..+..+|.+.|++++|.+.|++.. ..|+       ...+
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            455677778888889999999999998  44555 57788889999999999999999998854 5665       5566


Q ss_pred             HHHHHHHHhcCChhHHHHHHH
Q 043686           98 RALLEGCRIHVQVKTGKRVID  118 (282)
Q Consensus        98 ~~li~~~~~~g~~~~A~~~~~  118 (282)
                      ..+..++...|+.++|.+.|+
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHH
Confidence            666667777777666655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.10  E-value=0.005  Score=55.04  Aligned_cols=150  Identities=10%  Similarity=0.081  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhcCC---CHHHHHHHhh---ccCCCChhHHHHHHHHHHcc----CChHHHHHHHHhcCCCCCHHHHHHHHH
Q 043686           33 TFAAVLHACSTAG---MVEEGWLCFN---RIRSPKVTHHALMVSVLARA----GLFDEARIFIQEYHMERYPEVLRALLE  102 (282)
Q Consensus        33 ty~~ll~a~~~~g---~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~p~~~~~~~li~  102 (282)
                      .+..|-..|.+.|   +.++|.+.|+   ..-.++...+..|...|.+.    ++.++|.+.|++.. .-+...++.|-.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~  256 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ  256 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            7777777888899   9999999998   33334555556777777665    79999999999976 445778888877


Q ss_pred             H-H--HhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-----chhhhhcccceeeecCeE-------EEEecCC
Q 043686          103 G-C--RIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA-----KWDVVNQAYSWIEFRNKV-------HVFGTGD  167 (282)
Q Consensus       103 ~-~--~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g-----~~~~A~~~~~~~~~~~~~-------~~~i~~~  167 (282)
                      . |  ...++.++|.+.|++..+..  ++..+..|-.+|. .|     +.++|...+..-- .+..       ..+..|.
T Consensus       257 ~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~  332 (452)
T 3e4b_A          257 LLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY  332 (452)
T ss_dssp             HHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC
Confidence            7 4  56899999999999987543  5688888888887 55     8888888555433 3222       1223333


Q ss_pred             CCCCChHHHHHHHHHHHHHHHhCC
Q 043686          168 VSCPRSEGIFWELQSLMKKMEGDS  191 (282)
Q Consensus       168 ~~~~~~~~a~~~~~~l~~~M~~~g  191 (282)
                      ....+.++|.    .+|++-.+.|
T Consensus       333 g~~~d~~~A~----~~~~~Aa~~g  352 (452)
T 3e4b_A          333 LGKVYPQKAL----DHLLTAARNG  352 (452)
T ss_dssp             TSSCCHHHHH----HHHHHHHTTT
T ss_pred             CCCcCHHHHH----HHHHHHHhhC
Confidence            3344566665    6666665555

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.09  E-value=0.0049  Score=45.47  Aligned_cols=117  Identities=6%  Similarity=-0.032  Sum_probs=90.3

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccC-CCChhHHHHHHHHHHc----cC
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIR-SPKVTHHALMVSVLAR----AG   76 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~-~p~~~~~~~li~~~~~----~g   76 (282)
                      ..+..-.++.++|++.|++..+ .| .|+..    |-..|...+.+++|.++|+... .-+...+..|-..|.+    .+
T Consensus         2 ~~G~g~~~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~   75 (138)
T 1klx_A            2 VGGGTVKKDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKK   75 (138)
T ss_dssp             -CCSSHHHHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred             CCCcCCccCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCc
Confidence            4455667789999999999988 77 34443    5556667788999999999111 1356778888888887    88


Q ss_pred             ChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 043686           77 LFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        77 ~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~  124 (282)
                      +.++|.+.|++.--.-+..++..|-..|..    .++.++|.+.|++..+..
T Consensus        76 d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           76 DLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999999999985424567888889888988    899999999999988654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.00  E-value=0.0011  Score=59.15  Aligned_cols=78  Identities=12%  Similarity=0.065  Sum_probs=62.9

Q ss_pred             ccCChHHHHHHHHhcC------CC---CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC---hhHHHHHH
Q 043686           74 RAGLFDEARIFIQEYH------ME---RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS---AENYIMLS  135 (282)
Q Consensus        74 ~~g~~~~A~~l~~~m~------~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~---~~~~~~Li  135 (282)
                      +.|++++|+.++++..      +.   |+ ..+++.|...|...|++++|+.++++...     +.|++   ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4678999999998731      33   44 57899999999999999999999999872     34443   56788999


Q ss_pred             HHHHHcCchhhhhccc
Q 043686          136 NWYAAEAKWDVVNQAY  151 (282)
Q Consensus       136 ~~y~~~g~~~~A~~~~  151 (282)
                      ..|...|++++|+..+
T Consensus       390 ~~~~~qg~~~eA~~~~  405 (433)
T 3qww_A          390 RLYMGLENKAAGEKAL  405 (433)
T ss_dssp             HHHHHTTCHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHH
Confidence            9999999999997644

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.97  E-value=0.00057  Score=52.01  Aligned_cols=71  Identities=15%  Similarity=0.053  Sum_probs=60.0

Q ss_pred             HccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCCh----------hHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           73 ARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQV----------KTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        73 ~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      .+.+.+++|.+.++... ..|+ ...|+.+-.++...+++          ++|...|++..+++|++..+|..|-.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            45567889999998854 5664 88999888888888775          599999999999999999999999999998


Q ss_pred             cCc
Q 043686          141 EAK  143 (282)
Q Consensus       141 ~g~  143 (282)
                      .|+
T Consensus        93 lg~   95 (158)
T 1zu2_A           93 FAF   95 (158)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            864

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.96  E-value=0.0017  Score=57.87  Aligned_cols=84  Identities=7%  Similarity=0.025  Sum_probs=67.3

Q ss_pred             HHHHHHccCChHHHHHHHHhcC------CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCC---hh
Q 043686           68 MVSVLARAGLFDEARIFIQEYH------MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCE-----LKPLS---AE  129 (282)
Q Consensus        68 li~~~~~~g~~~~A~~l~~~m~------~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~p~~---~~  129 (282)
                      .+.-+.+.|++++|++++++..      ..|+    ..+++.|...|...|++++|+.++++...     ..|++   ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3566778899999999998742      3333    57899999999999999999999999872     34443   46


Q ss_pred             HHHHHHHHHHHcCchhhhhccc
Q 043686          130 NYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       130 ~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +++.|...|...|++++|+..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~  394 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNL  394 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHH
Confidence            7889999999999999997643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.87  E-value=0.0032  Score=41.87  Aligned_cols=58  Identities=21%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      ...|..+...|.+.|++++|...|++.....|+++.++..+...|.+.|++++|...+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   66 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY   66 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            5688889999999999999999999999999999899999999999999988886644

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.82  E-value=0.012  Score=55.48  Aligned_cols=130  Identities=6%  Similarity=-0.029  Sum_probs=96.8

Q ss_pred             hhcCChHHHHHHHHHhHHhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHH
Q 043686            6 SLHGQRELGLSLFSELEKKS-S-IEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~-g-~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~   80 (282)
                      -+.|..+.|..+|.+..+ . + ..+......+.+.-. ..++.+.|+.+|+   .-+.-+...+...++...+.|+.+.
T Consensus       445 rR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~  522 (679)
T 4e6h_A          445 KRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ  522 (679)
T ss_dssp             HHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHH
Confidence            456889999999999987 4 2 233333333333322 2355999999999   2233356667788888889999999


Q ss_pred             HHHHHHhcC-CCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           81 ARIFIQEYH-MER----YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        81 A~~l~~~m~-~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      |..+|+... ..|    ....|...+.-=.+.|+.+.+.++.+++.+..|++ .....+++=|
T Consensus       523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~-~~~~~f~~ry  584 (679)
T 4e6h_A          523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV-NKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC-CHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cHHHHHHHHh
Confidence            999999854 334    25789999999999999999999999999999976 5556666655

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.77  E-value=0.058  Score=45.63  Aligned_cols=133  Identities=4%  Similarity=-0.158  Sum_probs=101.0

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHH-HHHHHHHHhcCC--CHHHHHHHhh--ccCCC-ChhHHHHHHHHH----Hcc--
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLT-FAAVLHACSTAG--MVEEGWLCFN--RIRSP-KVTHHALMVSVL----ARA--   75 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~t-y~~ll~a~~~~g--~~~~a~~l~~--~g~~p-~~~~~~~li~~~----~~~--   75 (282)
                      ....++|+++++++..   +-|+..| |+.=-..+...|  +++++.++++  ....| +..+|+.--..+    .+.  
T Consensus        46 ~e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           46 EEYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence            3344689999999988   6676654 555555667777  9999999999  44555 455666554444    555  


Q ss_pred             -CChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           76 -GLFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQVK--TGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        76 -g~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                       ++++++.++++++- . ..|-.+|+.-.-.+.+.|+++  ++.+.++++.+.+|.|...|+--...+.+.++
T Consensus       123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence             78999999999875 3 446889999888888899988  99999999999999998888865555555444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.62  E-value=0.059  Score=45.55  Aligned_cols=135  Identities=5%  Similarity=-0.108  Sum_probs=105.9

Q ss_pred             ChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHH----hcC---CCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686           10 QRELGLSLFSELEKKSSIEIDP-LTFAAVLHAC----STA---GMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~----~~~---g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ++++++++++.+..   .-|+. ..|+.=-..+    .+.   ++++++.++++  ....| |-..|+--.-.+.+.|..
T Consensus        84 ~~~eeL~~~~~~L~---~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~  160 (306)
T 3dra_A           84 NLYDELDWCEEIAL---DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH  160 (306)
T ss_dssp             CHHHHHHHHHHHHH---HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred             cHHHHHHHHHHHHH---HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            89999999999987   34544 3444422222    333   78999999998  44555 678888888888888988


Q ss_pred             H--HHHHHHHhcC-CC-CCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhh
Q 043686           79 D--EARIFIQEYH-ME-RYPEVLRALLEGCRIHVQ------VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVV  147 (282)
Q Consensus        79 ~--~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A  147 (282)
                      +  ++.+.++++- .. .|-..|+.--....+.++      ++++.+.++++...+|.|...|+-+-..+.+.|+..++
T Consensus       161 ~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~  239 (306)
T 3dra_A          161 NDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ  239 (306)
T ss_dssp             TCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence            8  9999999875 34 468899887777777776      89999999999999999999999999999998875443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.36  E-value=0.035  Score=51.16  Aligned_cols=133  Identities=8%  Similarity=-0.113  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCC--CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccC-ChHHHHH
Q 043686           11 RELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAG--MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAG-LFDEARI   83 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g--~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g-~~~~A~~   83 (282)
                      +++|++.++++.+   ..| +..+|+.=--++.+.|  +++++.+.++  ....| |-..|+---..+.+.| ..+++.+
T Consensus        89 ~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A           89 VKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHH
Confidence            8999999999987   334 4457777666777888  6799999999  44555 5778888888888889 8999999


Q ss_pred             HHHhcC-CCC-CHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhh
Q 043686           84 FIQEYH-MER-YPEVLRALLEGCRIH--------------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDV  146 (282)
Q Consensus        84 l~~~m~-~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~  146 (282)
                      .++++- ..| |..+|+.....+.+.              +.+++|.+.+++.....|.+...|+-+-..+.+.++.++
T Consensus       166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            999875 555 588999888877663              567999999999999999999999999999988888555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.35  E-value=0.034  Score=48.18  Aligned_cols=118  Identities=9%  Similarity=-0.115  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHh----cCC----CHHHHHHHhh-----ccCCCChhHHHHHHHHHHccC
Q 043686           11 RELGLSLFSELEKKSSIEIDP-LTFAAVLHACS----TAG----MVEEGWLCFN-----RIRSPKVTHHALMVSVLARAG   76 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~----~~g----~~~~a~~l~~-----~g~~p~~~~~~~li~~~~~~g   76 (282)
                      ..+|+.+|++..+   ..|+- ..|..+--++.    ..+    ......+.+.     ..-..+..+|.++-..+...|
T Consensus       215 ~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g  291 (372)
T 3ly7_A          215 LNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG  291 (372)
T ss_dssp             HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence            4789999999887   66874 23333222221    111    1111111111     222446778888877777779


Q ss_pred             ChHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           77 LFDEARIFIQEYH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        77 ~~~~A~~l~~~m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      ++++|.+.+++.. ..|+...|..+-..+.-.|+.++|.+.|++...++|.. .||.
T Consensus       292 d~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~  347 (372)
T 3ly7_A          292 KTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLY  347 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHH
T ss_pred             CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHH
Confidence            9999999999976 67898888777888999999999999999999999954 5654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.33  E-value=0.031  Score=38.20  Aligned_cols=79  Identities=13%  Similarity=0.093  Sum_probs=59.1

Q ss_pred             CChhHHHHHHHHHHccCC---hHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686           60 PKVTHHALMVSVLARAGL---FDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus        60 p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      +|...+..+..++...++   .++|..+|++.- ..|+ +.++..+-..+.+.|++++|...|+++.+..|++ .....+
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~i   82 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVTI   82 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence            456677777777754444   689999998854 6776 7888888889999999999999999999888863 444455


Q ss_pred             HHHHH
Q 043686          135 SNWYA  139 (282)
Q Consensus       135 i~~y~  139 (282)
                      .....
T Consensus        83 ~~~I~   87 (93)
T 3bee_A           83 IESIN   87 (93)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.33  E-value=0.041  Score=38.18  Aligned_cols=74  Identities=12%  Similarity=0.050  Sum_probs=59.3

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC--C-------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH--M-------ERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY  131 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~-------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~  131 (282)
                      +..-+..|...+.+.|+++.|...|++..  .       .+...+|..|..+|.+.|++++|...+++...+.|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            44556678888889999999999887732  0       13477899999999999999999999999999999886664


Q ss_pred             HHH
Q 043686          132 IML  134 (282)
Q Consensus       132 ~~L  134 (282)
                      +.+
T Consensus        84 ~n~   86 (104)
T 2v5f_A           84 GNL   86 (104)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.27  E-value=0.084  Score=45.13  Aligned_cols=133  Identities=14%  Similarity=-0.001  Sum_probs=98.0

Q ss_pred             hhcCChH-HHHHHHHHhHHhCCCCCCHHH-HHH---HHHHHhcCC-------CHHHHHHHhh--ccCCC-ChhHHHHHHH
Q 043686            6 SLHGQRE-LGLSLFSELEKKSSIEIDPLT-FAA---VLHACSTAG-------MVEEGWLCFN--RIRSP-KVTHHALMVS   70 (282)
Q Consensus         6 ~~~g~~~-~A~~lf~~m~~~~g~~p~~~t-y~~---ll~a~~~~g-------~~~~a~~l~~--~g~~p-~~~~~~~li~   70 (282)
                      .+.|.++ +|++++..+..   +-|+..| |+.   ++....+..       .++++..+++  ....| +..+|+.---
T Consensus        40 ~~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4556665 79999999987   6676654 333   333333321       1567777777  44455 6778887777


Q ss_pred             HHHccC--ChHHHHHHHHhcC-C-CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           71 VLARAG--LFDEARIFIQEYH-M-ERYPEVLRALLEGCRIHVQ-VKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        71 ~~~~~g--~~~~A~~l~~~m~-~-~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      .+.+.|  .++++.++++++- . ..|-.+|+.---...+.|. ++++.+.++++.+.+|.|...|+-....+.+.
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            777888  4899999999875 3 4468899988888888888 58999999999999999988998776666655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.23  E-value=0.1  Score=44.93  Aligned_cols=134  Identities=7%  Similarity=-0.053  Sum_probs=103.0

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCC-CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc-C-ChH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAG-MVEEGWLCFN--RIRSP-KVTHHALMVSVLARA-G-LFD   79 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g-~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~-g-~~~   79 (282)
                      +.+..++|+++++++..   +.|+.. .|+.=-..+...| .++++.++++  ....| +..+|+.--..+.+. + +.+
T Consensus        66 ~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           66 KEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             hCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            44556789999999988   556655 4555444566667 5999999999  55556 567888777777776 7 889


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVK--------TGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      ++.++++++- ..| |-.+|+.-.-.+.+.|.++        ++.+.++++.+.+|.|...|+-....+.+.++
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999976 444 6889988777777777777        99999999999999998889877777766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.18  E-value=0.036  Score=51.13  Aligned_cols=129  Identities=10%  Similarity=-0.069  Sum_probs=100.6

Q ss_pred             ChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCCC----------HHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc
Q 043686           10 QRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAGM----------VEEGWLCFN--RIRSP-KVTHHALMVSVLARA   75 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g~----------~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~   75 (282)
                      ..++|++.++++..   +.|+.. .|+.=-.++.+.|+          ++++.+.++  ....| +..+|+.---.+.+.
T Consensus        44 ~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           44 LDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34578999999887   557654 44443333444444          888888888  55556 577888888888899


Q ss_pred             C--ChHHHHHHHHhcC-CC-CCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           76 G--LFDEARIFIQEYH-ME-RYPEVLRALLEGCRIHV-QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        76 g--~~~~A~~l~~~m~-~~-p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      |  ++++|.+.++++- .. .|..+|+.---.+.+.| .++++.+.++++.+.+|.+...|+-....+.+.
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9  7799999999975 44 46899999888888888 899999999999999999999999877777764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.87  E-value=0.019  Score=38.92  Aligned_cols=54  Identities=11%  Similarity=0.333  Sum_probs=47.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCChh-HHHHHHHHHHHcCchhhhhcccce
Q 043686          100 LLEGCRIHVQVKTGKRVIDQLCELKPLSAE-NYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       100 li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ....+.+.|++++|.+.|++..+..|+++. .|..+...|.+.|++++|...+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~   60 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS   60 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445688899999999999999999999888 999999999999999998765543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.85  E-value=0.22  Score=42.89  Aligned_cols=135  Identities=9%  Similarity=-0.040  Sum_probs=102.7

Q ss_pred             hcC-ChHHHHHHHHHhHHhCCCCCCH-HHHHHHHHHHhcC-C-CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChH
Q 043686            7 LHG-QRELGLSLFSELEKKSSIEIDP-LTFAAVLHACSTA-G-MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         7 ~~g-~~~~A~~lf~~m~~~~g~~p~~-~ty~~ll~a~~~~-g-~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~   79 (282)
                      ..| .+++++++++.+..   ..|+. ..|+.=--.+.+. + +.+++.++++  ....| |-..|+--.-.+.+.|..+
T Consensus       100 ~l~~~l~eEL~~~~~~L~---~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          100 SLNKSLEDELRLMNEFAV---QNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HTTCCHHHHHHHHHHHHH---TTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhhHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            345 58999999999987   34544 4566544444444 5 7889999888  55555 5677776666666666666


Q ss_pred             --------HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           80 --------EARIFIQEYH-MER-YPEVLRALLEGCRIHVQ-------VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        80 --------~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                              ++.+.++++- ..| |..+|+..-..+.+.++       ++++.+.++++....|.|...|+-+-..+.+.|
T Consensus       177 ~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          177 RISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence                    8899888865 344 68899999888888886       789999999999999999999999888888887


Q ss_pred             ch
Q 043686          143 KW  144 (282)
Q Consensus       143 ~~  144 (282)
                      +-
T Consensus       257 ~~  258 (349)
T 3q7a_A          257 LP  258 (349)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.74  E-value=0.023  Score=41.75  Aligned_cols=98  Identities=7%  Similarity=-0.064  Sum_probs=75.3

Q ss_pred             CCHHHHHHHhh----ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHH
Q 043686           45 GMVEEGWLCFN----RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRV  116 (282)
Q Consensus        45 g~~~~a~~l~~----~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~  116 (282)
                      ++.++|.++|+    .| .|+..    |-..|.+.+.+++|.+.|++.--.-+...++.|-..|..    .++.++|.+.
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            46788899888    44 33332    777888888999999999985424568888989999988    8999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHH----cCchhhhhc
Q 043686          117 IDQLCELKPLSAENYIMLSNWYAA----EAKWDVVNQ  149 (282)
Q Consensus       117 ~~~m~~~~p~~~~~~~~Li~~y~~----~g~~~~A~~  149 (282)
                      |++..+..  ++..+..|-.+|..    .++.++|.+
T Consensus        84 ~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~  118 (138)
T 1klx_A           84 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVK  118 (138)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence            99988653  45788889899977    555555543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.65  E-value=0.058  Score=36.81  Aligned_cols=61  Identities=10%  Similarity=0.059  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           92 RYPEVLRALLEGCRIHVQ---VKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        92 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +|...+..+-.++...++   .++|..++++..+.+|+++.....|-..+.+.|++++|...+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~   67 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWV   67 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            457788888888765544   7999999999999999999999999999999999888855443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.39  E-value=0.039  Score=49.95  Aligned_cols=90  Identities=10%  Similarity=-0.032  Sum_probs=66.8

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcCCCC--CHHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYHMER--YPEVL--RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~p--~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      ..|...++.+-+.+.++.|.++|+... .|  +..+|  .+.+.-.. .++.+.|..+|+...+..|+++..+...++..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            456666666667888999999999875 33  23333  33343333 34799999999999877787777778888888


Q ss_pred             HHcCchhhhhccccee
Q 043686          139 AAEAKWDVVNQAYSWI  154 (282)
Q Consensus       139 ~~~g~~~~A~~~~~~~  154 (282)
                      .+.|+.+.|..+++..
T Consensus       365 ~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          365 LRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8999999999877775

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=95.28  E-value=0.3  Score=41.64  Aligned_cols=128  Identities=8%  Similarity=-0.121  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCC--CHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCC-hHHHHH
Q 043686           11 RELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAG--MVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGL-FDEARI   83 (282)
Q Consensus        11 ~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g--~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~-~~~A~~   83 (282)
                      +++++.+++.+..   ..| +..+|+.=--.+.+.|  .++++.++++  ....| |-..|+--.-.+.+.|. ++++.+
T Consensus        90 l~~EL~~~~~~L~---~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~  166 (331)
T 3dss_A           90 VKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  166 (331)
T ss_dssp             HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            6789999999887   334 5567766555566666  4889999888  55555 67788877777888888 589999


Q ss_pred             HHHhcC-CCC-CHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           84 FIQEYH-MER-YPEVLRALLEGCRIH--------------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        84 l~~~m~-~~p-~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      .++++- ..| |..+|+..-..+.+.              +.++++.+.+++.....|.|...|+-+-..+.+.
T Consensus       167 ~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          167 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            998865 344 688898877766655              5688999999999999999999998766666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.16  E-value=0.011  Score=56.21  Aligned_cols=97  Identities=12%  Similarity=0.083  Sum_probs=66.5

Q ss_pred             hcCChHHHHH-HHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686            7 LHGQRELGLS-LFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI   85 (282)
Q Consensus         7 ~~g~~~~A~~-lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~   85 (282)
                      ..+++++|.+ ++..+       |+......++..+.+.|..++|.++.+     +.   ..-.+.....|++++|.++.
T Consensus       611 ~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~-----~~---~~~f~~~l~~~~~~~A~~~~  675 (814)
T 3mkq_A          611 LRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISP-----DQ---DQKFELALKVGQLTLARDLL  675 (814)
T ss_dssp             HTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCC-----CH---HHHHHHHHHHTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCC-----Cc---chheehhhhcCCHHHHHHHH
Confidence            3566666655 44222       212233777777888888888887775     11   11133456678889988887


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           86 QEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        86 ~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      +.+.   +...|..|-..+.+.|+++.|++.|..+.
T Consensus       676 ~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          676 TDES---AEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             TTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            7664   56788888888999999999999888774

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.09  E-value=0.11  Score=38.92  Aligned_cols=73  Identities=10%  Similarity=0.054  Sum_probs=56.2

Q ss_pred             CChhHHHHHHHHHHccC---ChHHHHHHHHhcC-CC-C--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHH
Q 043686           60 PKVTHHALMVSVLARAG---LFDEARIFIQEYH-ME-R--YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYI  132 (282)
Q Consensus        60 p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~-~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~  132 (282)
                      ++..+.-.+-.++++.+   +++++..+|++.- .. |  +...+-.|--+|.+.|++++|.+.++...+++|++.-..+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            56667777777888877   6678888888753 23 5  2556666778899999999999999999999998854443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.86  E-value=0.56  Score=39.17  Aligned_cols=86  Identities=6%  Similarity=-0.094  Sum_probs=63.0

Q ss_pred             hhHHHHHHH-HHHcc--CC------hHHHHHHHHhcC-CCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHhc
Q 043686           62 VTHHALMVS-VLARA--GL------FDEARIFIQEYH-MERY---PEVLRALLEGCRI-----HVQVKTGKRVIDQLCEL  123 (282)
Q Consensus        62 ~~~~~~li~-~~~~~--g~------~~~A~~l~~~m~-~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~  123 (282)
                      ...|..++. .+...  |.      +..|...+++.. +.|+   -..|.+|..-|.+     .|+.++|.+.|++..++
T Consensus       154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L  233 (301)
T 3u64_A          154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY  233 (301)
T ss_dssp             HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh
Confidence            456665554 44442  32      345666666533 7888   5689999999999     59999999999999999


Q ss_pred             CCCC-hhHHHHHHHHHHHc-Cchhhh
Q 043686          124 KPLS-AENYIMLSNWYAAE-AKWDVV  147 (282)
Q Consensus       124 ~p~~-~~~~~~Li~~y~~~-g~~~~A  147 (282)
                      .|+. ..++....+.|+.. |+.++|
T Consensus       234 nP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          234 CSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             CCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             CCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            9964 78888888888774 665555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.83  E-value=0.12  Score=44.64  Aligned_cols=124  Identities=12%  Similarity=0.064  Sum_probs=84.4

Q ss_pred             CCCCHHHHHHHHHHHhc--C---CCHHHHHHHhh--ccCCCC-hhHHHHHHHHHH----ccC----C---hHHHHHHHHh
Q 043686           27 IEIDPLTFAAVLHACST--A---GMVEEGWLCFN--RIRSPK-VTHHALMVSVLA----RAG----L---FDEARIFIQE   87 (282)
Q Consensus        27 ~~p~~~ty~~ll~a~~~--~---g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~----~~g----~---~~~A~~l~~~   87 (282)
                      .+.|...|...+.+...  .   ....+|.++|+  ..+.|+ ...|..+--+|.    ..+    .   ...|.+-...
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            34566778888876543  2   33589999999  677786 455554444442    111    1   1122222222


Q ss_pred             cC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           88 YH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        88 m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +. -..+..+|.++--.+...|++++|...++++..++| +...|..+-..+.-.|+.++|...+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~  333 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAY  333 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            33 244588888887777778999999999999999998 5678888899999999988886533

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.68  E-value=0.21  Score=47.37  Aligned_cols=98  Identities=8%  Similarity=-0.055  Sum_probs=67.5

Q ss_pred             HhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686           41 CSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL  120 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  120 (282)
                      ....|++++|.++.+.  -.+...|..|-..+.+.|+++.|++.|..+. .     |..+..-|...|+.+...++-+..
T Consensus       662 ~l~~~~~~~A~~~~~~--~~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d-----~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD--ESAEMKWRALGDASLQRFNFKLAIEAFTNAH-D-----LESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHTCHHHHHHHHTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C-----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHh--hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C-----hhhhHHHHHHcCCHHHHHHHHHHH
Confidence            4567999999999872  2456899999999999999999999999987 2     444555566677776655554444


Q ss_pred             HhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686          121 CELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       121 ~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      .. ..    -++.....|.+.|++++|.+.+
T Consensus       734 ~~-~~----~~~~A~~~~~~~g~~~~a~~~~  759 (814)
T 3mkq_A          734 ET-TG----KFNLAFNAYWIAGDIQGAKDLL  759 (814)
T ss_dssp             HH-TT----CHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HH-cC----chHHHHHHHHHcCCHHHHHHHH
Confidence            32 11    2344444566666766665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.42  E-value=0.35  Score=43.64  Aligned_cols=73  Identities=14%  Similarity=0.141  Sum_probs=37.3

Q ss_pred             CHHHHHHHhh---ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           46 MVEEGWLCFN---RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        46 ~~~~a~~l~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      +.+.|+.+|+   ..+ |+ ...+...++...+.|+.+.|..+|+...  .....|...+.-=.+.|+.+.+.++++++.
T Consensus       335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4556666665   111 22 2233444555555566666666666542  234555555554455566665555555554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.05  E-value=0.57  Score=32.14  Aligned_cols=65  Identities=11%  Similarity=0.048  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh-------c---cCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN-------R---IRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY   93 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~-------~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~   93 (282)
                      .+...+-.|-..+-+.|+++.|..+|+       .   .-.+...++..|..+|.+.|++++|...+++.. ..|+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            455566677778888899999998888       1   112346788999999999999999999999865 6776

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=92.04  E-value=0.34  Score=40.48  Aligned_cols=79  Identities=13%  Similarity=0.106  Sum_probs=66.4

Q ss_pred             HHHHHHHhh--ccCCCC---hhHHHHHHHHHHcc-----CChHHHHHHHHhcC-CCCC--HHHHHHHHHHHHhc-CChhH
Q 043686           47 VEEGWLCFN--RIRSPK---VTHHALMVSVLARA-----GLFDEARIFIQEYH-MERY--PEVLRALLEGCRIH-VQVKT  112 (282)
Q Consensus        47 ~~~a~~l~~--~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~-~~p~--~~~~~~li~~~~~~-g~~~~  112 (282)
                      ..+|...++  ..+.|+   ...|..|...|.+.     |+.++|++.|++.. +.|+  ..++......+++. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            556666666  677777   56899999999994     99999999999954 7784  88899999999995 99999


Q ss_pred             HHHHHHHHHhcCC
Q 043686          113 GKRVIDQLCELKP  125 (282)
Q Consensus       113 A~~~~~~m~~~~p  125 (282)
                      |.+.+++.....|
T Consensus       259 a~~~L~kAL~a~p  271 (301)
T 3u64_A          259 FDEALDRALAIDP  271 (301)
T ss_dssp             HHHHHHHHHHCCG
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999997655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=91.63  E-value=0.29  Score=36.70  Aligned_cols=84  Identities=7%  Similarity=-0.048  Sum_probs=62.3

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCC---CHHHHHHHhh--ccCC-C--ChhHHHHHHHHHHccCChH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAG---MVEEGWLCFN--RIRS-P--KVTHHALMVSVLARAGLFD   79 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g---~~~~a~~l~~--~g~~-p--~~~~~~~li~~~~~~g~~~   79 (282)
                      ......+.+-|.+... .|. ++..+--.+--+++++.   ++++|..+++  .... |  +...+-.|--+|.|.|+++
T Consensus        11 ~~~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~   88 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   88 (152)
T ss_dssp             HHHHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence            3455677788887766 555 67777777777888888   6779999999  2223 5  2445556777789999999


Q ss_pred             HHHHHHHhcC-CCCC
Q 043686           80 EARIFIQEYH-MERY   93 (282)
Q Consensus        80 ~A~~l~~~m~-~~p~   93 (282)
                      +|.+.++..- ++|+
T Consensus        89 ~A~~y~~~lL~ieP~  103 (152)
T 1pc2_A           89 KALKYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcCCC
Confidence            9999999965 7785

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.59  E-value=0.98  Score=42.91  Aligned_cols=122  Identities=12%  Similarity=0.048  Sum_probs=80.3

Q ss_pred             HHHHHHHhcCCC-HHHHHHHhh--ccCCCChhH--HHHHHHHHHccCChH-HHHHHHHh-cC--------C-CCCHH---
Q 043686           35 AAVLHACSTAGM-VEEGWLCFN--RIRSPKVTH--HALMVSVLARAGLFD-EARIFIQE-YH--------M-ERYPE---   95 (282)
Q Consensus        35 ~~ll~a~~~~g~-~~~a~~l~~--~g~~p~~~~--~~~li~~~~~~g~~~-~A~~l~~~-m~--------~-~p~~~---   95 (282)
                      .++++-+.-.|+ .+.|..+|+  ..-.|...+  ..++|..+-+.++-+ +|.+++.+ +.        . ..+..   
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~  331 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR  331 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence            445666666666 588999998  334453333  235555555544322 44444433 21        1 12221   


Q ss_pred             --HH-HHHH----HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           96 --VL-RALL----EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        96 --~~-~~li----~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                        .+ ..|+    .-+...|+++-|+++-++...+-|.+-.+|..|...|.+.|+++.|.-..+.+|.
T Consensus       332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence              11 1133    3366789999999999999999999999999999999999999999997766653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=89.28  E-value=5.9  Score=30.28  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=42.7

Q ss_pred             hcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043686           42 STAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYHMERYPEVLRALLEGCRIHVQVKTGKRV  116 (282)
Q Consensus        42 ~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~  116 (282)
                      ...|+++.|.++-+..  .+...|..|-+..-+.|+++-|++.|....      -|..|.--|.-.|+.++-.++
T Consensus        16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH------SFDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------CHHHHHHHHHHhCCHHHHHHH
Confidence            3557777777776511  245678888888888888888888887766      233444445555666554444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.91  E-value=3.4  Score=29.74  Aligned_cols=72  Identities=11%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             CChhHHHHHHHHHHccCChHH---HHHHHHhcC-CC-C-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686           60 PKVTHHALMVSVLARAGLFDE---ARIFIQEYH-ME-R-Y-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY  131 (282)
Q Consensus        60 p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~-~~-p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~  131 (282)
                      |+..+--.+-.++.+..+.++   +..++++.- -. | + ....-.|--|+.|.|++++|.+.++.+.+++|++.-..
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            666666666677777776665   888888754 22 4 2 23344566689999999999999999999999875443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=88.86  E-value=2.4  Score=31.66  Aligned_cols=109  Identities=13%  Similarity=0.057  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHHhcCCCH------HHHHHHhh---ccCCCChhH-HHHHHHH------HHccCChHHHHHHHHhcC-CCC
Q 043686           30 DPLTFAAVLHACSTAGMV------EEGWLCFN---RIRSPKVTH-HALMVSV------LARAGLFDEARIFIQEYH-MER   92 (282)
Q Consensus        30 ~~~ty~~ll~a~~~~g~~------~~a~~l~~---~g~~p~~~~-~~~li~~------~~~~g~~~~A~~l~~~m~-~~p   92 (282)
                      |..+|-..+.-.-+.|+.      ++.+++|+   ..++|+... |..-|..      |-..+++++|.++|+.+. ...
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence            556777777777777877      78888888   666665321 1111111      123489999999999874 211


Q ss_pred             C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           93 Y-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        93 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      . ...|-.--.-=.+.|++.+|.+++....++.|.......+.+.-+
T Consensus        92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl  138 (161)
T 4h7y_A           92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL  138 (161)
T ss_dssp             TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence            2 666766666678899999999999999999986666666665544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.69  E-value=5.7  Score=29.22  Aligned_cols=112  Identities=14%  Similarity=0.099  Sum_probs=56.1

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-ccCC--------------------CChhH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RIRS--------------------PKVTH   64 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g~~--------------------p~~~~   64 (282)
                      .-.|.+++..++..+... .   .+..-||-+|--...+-+-+-..++++ -|--                    -+...
T Consensus        18 ildG~v~qGveii~k~~~-s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~   93 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITK-S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH   93 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHH-H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred             HHhhhHHHHHHHHHHHcC-C---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence            346777888888888766 2   344455555544444344333344443 1111                    11222


Q ss_pred             HHHHHHHHHccCChHHHHHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           65 HALMVSVLARAGLFDEARIFIQEY-H-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ..--++.+...|+-|.-.+++.++ . .+|+....-.+-++|.+.|+..+|.+++.++.
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC  152 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC  152 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            333344444555555555555552 2 34455555555556666666666666655554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.54  E-value=5.2  Score=30.60  Aligned_cols=100  Identities=9%  Similarity=0.070  Sum_probs=69.1

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFI   85 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~   85 (282)
                      .+.|+++.|.++-+++       -+...|..|-......|+++-|.+.|.     ..--+..+.-.|.-.|+.+.-.++-
T Consensus        16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~-----~~~D~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQ-----TQHSFDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHH-----HTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHH-----HhCCHHHHHHHHHHhCCHHHHHHHH
Confidence            4689999999998775       357899999999999999999999998     1123455666666677776666554


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686           86 QEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQL  120 (282)
Q Consensus        86 ~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  120 (282)
                      +.-..+-+   +|.-...+--.|+++++.++|.+.
T Consensus        84 ~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           84 NIAQTRED---FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            43221212   344445566667788777776543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.35  E-value=2.1  Score=29.50  Aligned_cols=47  Identities=11%  Similarity=0.030  Sum_probs=22.3

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHHH
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALLE  102 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li~  102 (282)
                      ..+.|+..+..+-+.++.|.+++..|.++|+..+  +.+...+|..++.
T Consensus        39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            4444555555555555555555555555555443  3333334444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.34  E-value=1.3  Score=38.57  Aligned_cols=64  Identities=9%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC--------CCCCHHH
Q 043686           33 TFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH--------MERYPEV   96 (282)
Q Consensus        33 ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~p~~~~   96 (282)
                      ....++.++...|+.+++.....  ....| +...|..+|.+|.+.|+..+|.+.|+...        +.|+..+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            45567777888899999887777  44555 67788999999999999999999887742        7787544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.22  E-value=4.2  Score=38.65  Aligned_cols=110  Identities=10%  Similarity=0.003  Sum_probs=71.4

Q ss_pred             cCC-hHHHHHHHHHhHHhCCCCCCHHH--HHHHHHHHhcCCC-HHHHHHHhh----------ccCCCChh------HH-H
Q 043686            8 HGQ-RELGLSLFSELEKKSSIEIDPLT--FAAVLHACSTAGM-VEEGWLCFN----------RIRSPKVT------HH-A   66 (282)
Q Consensus         8 ~g~-~~~A~~lf~~m~~~~g~~p~~~t--y~~ll~a~~~~g~-~~~a~~l~~----------~g~~p~~~------~~-~   66 (282)
                      .|+ ++.|+.+|+++.. .  .|...+  ..+++..+.+.++ --+|.++..          ....+...      .+ .
T Consensus       261 t~~~~~~a~~~le~L~~-~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  337 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTK-K--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMS  337 (754)
T ss_dssp             CGGGHHHHHHHHHHHHH-H--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHh-h--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcch
Confidence            444 5789999999887 3  343332  3344444444442 223444443          12222211      11 1


Q ss_pred             HHH----HHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 043686           67 LMV----SVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQL  120 (282)
Q Consensus        67 ~li----~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  120 (282)
                      .|+    +.+-+.|+++-|.++-++.. +.|+ -.+|..|..+|.+.|+++.|+-.+..+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            233    33556899999999998865 6776 889999999999999999999998876

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=84.06  E-value=9.2  Score=28.13  Aligned_cols=77  Identities=9%  Similarity=-0.104  Sum_probs=61.2

Q ss_pred             hhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh---ccCCCChhHHHHHHHHHHccCChHHHH
Q 043686            6 SLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN---RIRSPKVTHHALMVSVLARAGLFDEAR   82 (282)
Q Consensus         6 ~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~---~g~~p~~~~~~~li~~~~~~g~~~~A~   82 (282)
                      ...|++.+.+.-|..+..      +..-+..-|+.+...|.-++--.+..   ....|+....-.+-.+|.|.|+..+|.
T Consensus        72 s~C~NlKrVi~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~  145 (172)
T 1wy6_A           72 DKCQNLKSVVECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT  145 (172)
T ss_dssp             GGCSCTHHHHHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhcHHHHHHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHH
Confidence            456777777777777643      55667888899999999998888887   456678888889999999999999999


Q ss_pred             HHHHhc
Q 043686           83 IFIQEY   88 (282)
Q Consensus        83 ~l~~~m   88 (282)
                      +++.+.
T Consensus       146 eLl~~A  151 (172)
T 1wy6_A          146 TLLIEA  151 (172)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.17
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.1
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.98
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.96
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.55
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.47
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.46
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.39
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.38
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.37
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.32
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.24
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.08
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.06
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.98
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.92
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.81
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.76
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.57
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.51
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.49
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.26
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.25
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.9
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.9
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.81
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.76
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.83
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.08
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.87
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.99
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.91
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	83.09
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	80.87

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.7e-10  Score=94.32  Aligned_cols=147  Identities=12%  Similarity=0.034  Sum_probs=106.3

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      ..|...|++++|+..|.+... .. ..+...+..+-..+.+.|++++|.+.|+  ..+.|+ ..+|..+...|.+.|+++
T Consensus       211 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  288 (388)
T d1w3ba_         211 NVLKEARIFDRAVAAYLRALS-LS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred             hhhhccccHHHHHHHHHHhHH-Hh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            356677788888888877765 32 2345566667777777888888888877  445554 567777777888888888


Q ss_pred             HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhccc
Q 043686           80 EARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus        80 ~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                      +|.+.|+...  ...+...+..+...|.+.|++++|.+.|++..++.|+++.++..+...|.+.|++++|...+
T Consensus       289 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  362 (388)
T d1w3ba_         289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888777643  34456777777777888888888888888777777877777777778888888888777644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.7e-10  Score=92.86  Aligned_cols=185  Identities=12%  Similarity=0.086  Sum_probs=148.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF   78 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~   78 (282)
                      ..+...|+.++|...+.+..+   ..|+ ...|..+...+...|++++|...+.  ....| +...+..+...|.+.|++
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  253 (388)
T d1w3ba_         177 CVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI  253 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             ccccccCcHHHHHHHHHHHHH---hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCH
Confidence            356778999999999999877   3454 4578888889999999999999998  33333 567888899999999999


Q ss_pred             HHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee
Q 043686           79 DEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF  156 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~  156 (282)
                      ++|.+.|++.. ..|+ ..+|..+...|.+.|++++|.+.++......|.+...+..+...|.+.|++++|...+...-.
T Consensus       254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  333 (388)
T d1w3ba_         254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE  333 (388)
T ss_dssp             HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999854 5675 789999999999999999999999999999998989999999999999999999985543211


Q ss_pred             -c-CeE---EEEecCCCCCCChHHHHHHHHHHHHHHHhCCCccCC
Q 043686          157 -R-NKV---HVFGTGDVSCPRSEGIFWELQSLMKKMEGDSLRPKP  196 (282)
Q Consensus       157 -~-~~~---~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~g~~pd~  196 (282)
                       . +..   ..+-..+...|+.++|.    ..|++..+  +.|+.
T Consensus       334 ~~p~~~~~~~~la~~~~~~g~~~~A~----~~~~~al~--l~P~~  372 (388)
T d1w3ba_         334 VFPEFAAAHSNLASVLQQQGKLQEAL----MHYKEAIR--ISPTF  372 (388)
T ss_dssp             SCTTCHHHHHHHHHHHHTTTCCHHHH----HHHHHHHT--TCTTC
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHH--hCCCC
Confidence             1 111   22334567889999998    66666543  45654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.1e-09  Score=86.38  Aligned_cols=179  Identities=9%  Similarity=-0.002  Sum_probs=140.7

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .|.+.|++++|++.|++..+   ..|+ ..+|..+-.++...|++++|...|.  ..+.|+ ...|..+...|.+.|+++
T Consensus        28 ~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            46789999999999999887   4565 5688888889999999999999998  556674 678888899999999999


Q ss_pred             HHHHHHHhcC--------------------------------------------------C---CCCHHHHHHHHHHHHh
Q 043686           80 EARIFIQEYH--------------------------------------------------M---ERYPEVLRALLEGCRI  106 (282)
Q Consensus        80 ~A~~l~~~m~--------------------------------------------------~---~p~~~~~~~li~~~~~  106 (282)
                      +|.+.+++..                                                  .   .++..+|..+...+.+
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            9988776521                                                  1   1246788889999999


Q ss_pred             cCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeee--cCeE---EEEecCCCCCCChHHHHHHHH
Q 043686          107 HVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEF--RNKV---HVFGTGDVSCPRSEGIFWELQ  181 (282)
Q Consensus       107 ~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~--~~~~---~~~i~~~~~~~~~~~a~~~~~  181 (282)
                      .|++++|...|++.....|+++.+|..+...|.+.|++++|.+.+.....  .+..   ..+-..+.+.|+.++|++..+
T Consensus       185 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  264 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL  264 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999985544221  1111   223344667888999985554


Q ss_pred             HHHH
Q 043686          182 SLMK  185 (282)
Q Consensus       182 ~l~~  185 (282)
                      +.++
T Consensus       265 ~al~  268 (323)
T d1fcha_         265 EALN  268 (323)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-08  Score=84.81  Aligned_cols=148  Identities=10%  Similarity=-0.007  Sum_probs=122.0

Q ss_pred             hhhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--cc----------------------
Q 043686            3 LGYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RI----------------------   57 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g----------------------   57 (282)
                      ..|.+.|++++|+..|.+..+   +.|+ ...+..+...+.+.|++++|.+.++  ..                      
T Consensus        61 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (323)
T d1fcha_          61 TTQAENEQELLAISALRRCLE---LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG  137 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred             HHHHHcCChHHHHHHHHhhhc---cccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccc
Confidence            467889999999999999877   4454 5677777888999999999999886  11                      


Q ss_pred             ---------------------------CCC---ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHH
Q 043686           58 ---------------------------RSP---KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCR  105 (282)
Q Consensus        58 ---------------------------~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~  105 (282)
                                                 ..|   +..++..+...+.+.|++++|...|++.. ..|+ ..+|..+...|.
T Consensus       138 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  217 (323)
T d1fcha_         138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA  217 (323)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccc
Confidence                                       112   34456677788889999999999999854 4565 888999999999


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          106 IHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +.|++++|.+.|++..++.|+++.+|..|...|.+.|++++|...+..
T Consensus       218 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  265 (323)
T d1fcha_         218 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE  265 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999999989999999999999999999886544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.7e-08  Score=80.50  Aligned_cols=138  Identities=7%  Similarity=-0.083  Sum_probs=117.7

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHH-HHHHHHHHHhcCC-CHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCCh
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPL-TFAAVLHACSTAG-MVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLF   78 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~-ty~~ll~a~~~~g-~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~   78 (282)
                      .+.+.++.++|++++++..+   +.|+.. .|+..-.++...| ++++|...++  ..+.|+ ..+|..+...+.+.|++
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~---lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~  128 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP  128 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCchHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccH
Confidence            46678999999999999988   667665 5566666777766 5899999998  566674 78999999999999999


Q ss_pred             HHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686           79 DEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus        79 ~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      ++|.+.|+++. ..| +..+|+.+...+.+.|++++|.+.|+++.+++|.+...|+.+...+.+.+..
T Consensus       129 ~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         129 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            99999999965 556 4999999999999999999999999999999999989999888777777663

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=5.8e-08  Score=75.03  Aligned_cols=112  Identities=7%  Similarity=-0.126  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHH
Q 043686           29 IDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEG  103 (282)
Q Consensus        29 p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~  103 (282)
                      |+...+...-+.+.+.|++++|...|.  ..+.| +...|+.+..+|.+.|++++|.+.|++.. +.|+ ..+|..+..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            666677777778888888888888887  44556 46678888888888888888888888854 6675 7788888888


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686          104 CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus       104 ~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      |.+.|++++|...|++..++.|++...+..++..+.+
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~  118 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            8888888888888888887666543444434443333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.8e-07  Score=72.17  Aligned_cols=94  Identities=12%  Similarity=-0.051  Sum_probs=85.2

Q ss_pred             CCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686           59 SPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus        59 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      .|+...+.-..+.|.+.|++++|.+.|++.- ..|+ ...|+.+..+|.+.|++++|...|++...++|+++.+|..+..
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            4777788888999999999999999998853 5665 8899999999999999999999999999999999999999999


Q ss_pred             HHHHcCchhhhhcccc
Q 043686          137 WYAAEAKWDVVNQAYS  152 (282)
Q Consensus       137 ~y~~~g~~~~A~~~~~  152 (282)
                      +|.+.|++++|...+.
T Consensus        81 ~~~~l~~~~~A~~~~~   96 (201)
T d2c2la1          81 CQLEMESYDEAIANLQ   96 (201)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHH
Confidence            9999999999988554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.8e-07  Score=65.32  Aligned_cols=99  Identities=10%  Similarity=0.063  Sum_probs=81.0

Q ss_pred             HHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhH
Q 043686           38 LHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKT  112 (282)
Q Consensus        38 l~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~  112 (282)
                      -+.+.+.|++++|...|.  ....| +...|..+-.+|.+.|++++|.+.+++.. +.| +...|..+..+|...|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            345777888888888888  45566 46788999999999999999999998854 455 48889999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHH
Q 043686          113 GKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus       113 A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      |...|++..+..|+++..+..+-+
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999988766655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-06  Score=65.57  Aligned_cols=100  Identities=8%  Similarity=-0.032  Sum_probs=84.8

Q ss_pred             HHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhH
Q 043686           38 LHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKT  112 (282)
Q Consensus        38 l~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~  112 (282)
                      -+.|.+.|++++|...|.  ..+.| +...|..+..+|-+.|++++|.+.|++.. +.|+ ..+|..+..+|...|++++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHH
Confidence            345778999999999998  55566 47788999999999999999999999864 5665 7899999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHH
Q 043686          113 GKRVIDQLCELKPLSAENYIMLSNW  137 (282)
Q Consensus       113 A~~~~~~m~~~~p~~~~~~~~Li~~  137 (282)
                      |.+.|++...+.|++...+..+...
T Consensus        97 A~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          97 ALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999887776665444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=7.9e-07  Score=71.08  Aligned_cols=137  Identities=12%  Similarity=-0.041  Sum_probs=104.0

Q ss_pred             hcCChHHHHHHHHHhHHhCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHH
Q 043686            7 LHGQRELGLSLFSELEKKSSIEID--PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         7 ~~g~~~~A~~lf~~m~~~~g~~p~--~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A   81 (282)
                      ..++.+.|+.-+.+........|.  ..+|..+-..|.+.|++++|.+.|+  ..+.|+ ..+|+.+..+|.+.|++++|
T Consensus        11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            345566777777777651222221  2356666678889999999999999  667775 77899999999999999999


Q ss_pred             HHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           82 RIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        82 ~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      .+.|++.. ..|+ ..+|..+...|...|++++|.+.|+...+..|.+......+...+.+.+.
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            99999865 5665 77899999999999999999999999999999776555544444444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=9.7e-07  Score=73.12  Aligned_cols=144  Identities=7%  Similarity=-0.050  Sum_probs=113.4

Q ss_pred             CChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC--hhHHHHHHHHHHccCChHHHHHH
Q 043686            9 GQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK--VTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         9 g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~--~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      +..++|..+|++..+ ...+-+...|.......-+.|..++|+.+|+  ....|.  ..+|...+....+.|+++.|.++
T Consensus        78 ~~~~~a~~i~~ral~-~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          78 LFSDEAANIYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             cchHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            456789999999875 4444455667778888889999999999999  566664  34789999999999999999999


Q ss_pred             HHhcC-CCC-CHHHHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686           85 IQEYH-MER-YPEVLRALLEG-CRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus        85 ~~~m~-~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      |++.. ..| +...|-....- +...|+.+.|..+|+.+....|+++..|...++.+.+.|+++.|..+|+.
T Consensus       157 ~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~  228 (308)
T d2onda1         157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  228 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            99864 344 34444443332 44568999999999999998999989999999999999998888765554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.7e-06  Score=65.54  Aligned_cols=119  Identities=12%  Similarity=-0.018  Sum_probs=98.3

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~   80 (282)
                      .+...|++++|++.|.++..     |+..+|..+-.++.+.|++++|.+.|+  ..+.|+ ...|..+..+|.+.|+.++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~~-----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            35678999999999987654     788889999899999999999999999  667775 7789999999999999999


Q ss_pred             HHHHHHhcC--CC---------------CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           81 ARIFIQEYH--ME---------------RY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        81 A~~l~~~m~--~~---------------p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      |.+.|++..  ..               ++ ..++..+-.+|.+.|++++|.+.|....++.|..
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999888731  11               11 3566778888999999999999999999887743

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.9e-06  Score=64.65  Aligned_cols=112  Identities=7%  Similarity=-0.025  Sum_probs=81.4

Q ss_pred             HhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 043686           41 CSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVID  118 (282)
Q Consensus        41 ~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~  118 (282)
                      +...|++++|.+.|..-..|+..+|..+..+|.+.|++++|++.|++.. +.|+ ...|+.+-.+|.+.|++++|.+.|+
T Consensus        15 ~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~   94 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK   94 (192)
T ss_dssp             HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            5667888888888884455677777788888888888888888888743 5565 7788888888888888888888888


Q ss_pred             HHHhcCCCC----------------hhHHHHHHHHHHHcCchhhhhcccc
Q 043686          119 QLCELKPLS----------------AENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       119 ~m~~~~p~~----------------~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +.....|.+                ..++..+..+|.+.|++++|.+.+.
T Consensus        95 kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~  144 (192)
T d1hh8a_          95 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  144 (192)
T ss_dssp             HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            876543322                1344556677788888888876443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.39  E-value=4.7e-07  Score=63.58  Aligned_cols=87  Identities=11%  Similarity=-0.045  Sum_probs=77.5

Q ss_pred             HHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCc
Q 043686           66 ALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAK  143 (282)
Q Consensus        66 ~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~  143 (282)
                      -.+...+-+.|++++|...|++.. ..|+ ..+|..+...|.+.|++++|...|++..+++|+++.+|..|...|.+.|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            345667888999999999999965 5675 89999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccc
Q 043686          144 WDVVNQAYS  152 (282)
Q Consensus       144 ~~~A~~~~~  152 (282)
                      +++|.+.++
T Consensus       100 ~~~A~~~l~  108 (112)
T d1hxia_         100 ANAALASLR  108 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999976543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=6.7e-06  Score=67.85  Aligned_cols=145  Identities=10%  Similarity=-0.001  Sum_probs=111.0

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHH-HHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSV-LARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~-~~~~g~~~   79 (282)
                      .+-+.|+.++|..+|+++.. .........|...+..+.+.|+++.|+++|+  ....| +...|...... +...|+.+
T Consensus       108 ~~~~~~~~~~a~~i~~~~l~-~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         108 YEESRMKYEKVHSIYNRLLA-IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT-SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHHhcccHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHH
Confidence            34577999999999999877 4333334578999999999999999999999  44444 34455544443 34468999


Q ss_pred             HHHHHHHhcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHcCchhhhhc
Q 043686           80 EARIFIQEYH--MERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS----AENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        80 ~A~~l~~~m~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~----~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      .|.++|+.+.  ...+...|...+.-..+.|++++|..+|++.....|.+    ...|...+..-.+.|+++.+.+
T Consensus       187 ~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~  262 (308)
T d2onda1         187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  262 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999865  33458899999999999999999999999998755533    2468888887777787766644

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=5e-06  Score=66.20  Aligned_cols=119  Identities=17%  Similarity=0.051  Sum_probs=93.5

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFD   79 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~   79 (282)
                      .|.+.|++++|++.|++..+   +.|+ ..+|+.+-.++.+.|++++|.+.|+  ..+.|+ ..++..+...|.+.|+++
T Consensus        46 ~y~~~g~~~~A~~~~~~al~---l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  122 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK  122 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHHhhc---cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHH
Confidence            57889999999999999887   4564 4688888889999999999999999  666775 668899999999999999


Q ss_pred             HHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 043686           80 EARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus        80 ~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      +|.+.|++.. ..| +...+..+.-++.+.+..+.+..+........+
T Consensus       123 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (259)
T d1xnfa_         123 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  170 (259)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence            9999999853 445 455555555566666666666666666555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-06  Score=61.94  Aligned_cols=87  Identities=10%  Similarity=-0.004  Sum_probs=77.4

Q ss_pred             HHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCch
Q 043686           67 LMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKW  144 (282)
Q Consensus        67 ~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~  144 (282)
                      .-.+.+.+.|++++|...|++.. ..|+ ...|+.+-.+|.+.|++++|.+.+....++.|+++..|..+..+|...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            34567889999999999999954 4664 889999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccce
Q 043686          145 DVVNQAYSW  153 (282)
Q Consensus       145 ~~A~~~~~~  153 (282)
                      ++|...+..
T Consensus        88 ~~A~~~~~~   96 (117)
T d1elwa_          88 EEAKRTYEE   96 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999775544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.8e-06  Score=64.25  Aligned_cols=87  Identities=10%  Similarity=-0.051  Sum_probs=77.2

Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEA  142 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g  142 (282)
                      +......|.+.|++++|...|++.. ..|+ ...|+.+..+|.+.|++++|.+.|+++.+++|.++.+|..+..+|...|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            4445667889999999999999854 5665 8899999999999999999999999999999999999999999999999


Q ss_pred             chhhhhccc
Q 043686          143 KWDVVNQAY  151 (282)
Q Consensus       143 ~~~~A~~~~  151 (282)
                      ++++|...+
T Consensus        93 ~~~eA~~~~  101 (159)
T d1a17a_          93 KFRAALRDY  101 (159)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            999886533

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.7e-06  Score=70.81  Aligned_cols=122  Identities=8%  Similarity=-0.095  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccC-ChHHHHHHHHhcC-CCCC-HHHHHHHHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAG-LFDEARIFIQEYH-MERY-PEVLRALLEGCR  105 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g-~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~  105 (282)
                      ..|+.+-..+.+.+..++|.++++  ..+.|+ ...|+....++.+.| ++++|.+.+++.. ..|+ ..+|+.+-..+.
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            456666667888999999999999  677885 668889998988877 5899999999854 5665 899999999999


Q ss_pred             hcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          106 IHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       106 ~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +.|++++|.+.++++.+++|.+...|+.+...|.+.|++++|...++.
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~  171 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  171 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999984444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.24  E-value=7.8e-06  Score=61.33  Aligned_cols=87  Identities=8%  Similarity=-0.090  Sum_probs=74.5

Q ss_pred             ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 043686           61 KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWY  138 (282)
Q Consensus        61 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y  138 (282)
                      +...|..+-.+|.+.|++++|...+++.. +.|+ ..+|..+..+|.+.|++++|.+.|++..++.|++......|...+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35577888899999999999999999853 6676 889999999999999999999999999999999988888887777


Q ss_pred             HHcCchhhh
Q 043686          139 AAEAKWDVV  147 (282)
Q Consensus       139 ~~~g~~~~A  147 (282)
                      -+.....++
T Consensus       156 ~~l~~~~~~  164 (169)
T d1ihga1         156 QKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            665555444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.3e-05  Score=60.24  Aligned_cols=83  Identities=10%  Similarity=-0.025  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      .+|+.+..+|.+.|++++|++.+++.. +.| ++.+|..+..+|...|++++|...|++..++.|+++.....+-..+-+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            467778899999999999999998854 667 589999999999999999999999999999999997777777666655


Q ss_pred             cCchh
Q 043686          141 EAKWD  145 (282)
Q Consensus       141 ~g~~~  145 (282)
                      .+...
T Consensus       143 ~~~~~  147 (170)
T d1p5qa1         143 IRRQL  147 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.1e-06  Score=57.72  Aligned_cols=100  Identities=11%  Similarity=0.040  Sum_probs=79.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh---HHHHHHHHhcC-CCCC---HHHHHHHHHHH
Q 043686           35 AAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF---DEARIFIQEYH-MERY---PEVLRALLEGC  104 (282)
Q Consensus        35 ~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~---~~A~~l~~~m~-~~p~---~~~~~~li~~~  104 (282)
                      ..+++.+...+++++|.+.|+  ..+.| +..++..+..++.+.++.   ++|.++|++.- ..|+   ..+|..|-.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            457778888889999999998  55556 467888888888876554   56999999864 4443   34788899999


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686          105 RIHVQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus       105 ~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      .+.|++++|.+.|+++.+++|++......+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            999999999999999999999886555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.08  E-value=1.2e-05  Score=59.34  Aligned_cols=77  Identities=8%  Similarity=-0.009  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      .+|+.+..+|.+.|++++|.+.+++.- +.| ++.+|..+..+|...|++++|...|++...++|+++.+...+-...-
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            477889999999999999999999854 566 58999999999999999999999999999999998777666555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=2.2e-06  Score=71.52  Aligned_cols=141  Identities=12%  Similarity=-0.024  Sum_probs=107.5

Q ss_pred             ChHHHHHHHHHhHHhCCCCCCHHHH-H---HHHHHHhcC-------CCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHcc
Q 043686           10 QRELGLSLFSELEKKSSIEIDPLTF-A---AVLHACSTA-------GMVEEGWLCFN--RIRSP-KVTHHALMVSVLARA   75 (282)
Q Consensus        10 ~~~~A~~lf~~m~~~~g~~p~~~ty-~---~ll~a~~~~-------g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~   75 (282)
                      ..++|++++.+..+   ..|+..+. +   .++......       |.+++|..+++  ....| +...|..+..++...
T Consensus        44 ~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          44 LDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence            35899999999877   56876543 2   233444443       44778888888  45556 566777777777776


Q ss_pred             CC--hHHHHHHHHhcC-CCC-CHHHHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           76 GL--FDEARIFIQEYH-MER-YPEVLRALL-EGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        76 g~--~~~A~~l~~~m~-~~p-~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      ++  .++|...+.+.. ..| +...|..++ ..+...+..++|...++++...+|.+..+|+.+...|.+.|+.++|...
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            64  789999998864 344 577776554 6777889999999999999999999999999999999999999999875


Q ss_pred             cce
Q 043686          151 YSW  153 (282)
Q Consensus       151 ~~~  153 (282)
                      +..
T Consensus       201 ~~~  203 (334)
T d1dcea1         201 GRL  203 (334)
T ss_dssp             CSS
T ss_pred             HHH
Confidence            543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.98  E-value=6.1e-05  Score=56.23  Aligned_cols=82  Identities=7%  Similarity=0.024  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAA  140 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~  140 (282)
                      .+|+.+-.+|.+.|++++|...+++.. ..| +..+|..+..+|...|++++|.+.|+++..++|++..+...+-....+
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            456778888999999999999999854 455 488999999999999999999999999999999998777777666555


Q ss_pred             cCch
Q 043686          141 EAKW  144 (282)
Q Consensus       141 ~g~~  144 (282)
                      .+..
T Consensus       145 ~~~~  148 (168)
T d1kt1a1         145 AKEH  148 (168)
T ss_dssp             HHHH
T ss_pred             HHhH
Confidence            5443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=2.8e-05  Score=63.42  Aligned_cols=151  Identities=9%  Similarity=-0.021  Sum_probs=104.8

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCCCCC-HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCC-CChhHHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSIEID-PLTFAAVLHACSTAGMVEEGWLCFN--------RIRS-PKVTHHALMV   69 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~~p~-~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~-p~~~~~~~li   69 (282)
                      ..|-..|++++|.+.|.+..+-   .+-.|+ ..+|..+-..|.+.|++++|.+.++        .|-. ....++..+.
T Consensus        45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  124 (290)
T d1qqea_          45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (290)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence            3567788999999999887541   122222 2578888888999999999999988        2111 1244566666


Q ss_pred             HHHH-ccCChHHHHHHHHhcC----CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh-------hHHHH
Q 043686           70 SVLA-RAGLFDEARIFIQEYH----MERY----PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA-------ENYIM  133 (282)
Q Consensus        70 ~~~~-~~g~~~~A~~l~~~m~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~-------~~~~~  133 (282)
                      ..|- ..|++++|.+.+++..    ...+    ..+|..+...|.+.|++++|...|++.....|.+.       ..+..
T Consensus       125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (290)
T d1qqea_         125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (290)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHH
Confidence            6664 4699999999998742    1111    45688888899999999999999999886655432       12334


Q ss_pred             HHHHHHHcCchhhhhcccce
Q 043686          134 LSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ++-.|...|+++.|...+..
T Consensus       205 ~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         205 KGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHG
T ss_pred             HHHHHHHhccHHHHHHHHHH
Confidence            45566677888888775554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-05  Score=57.56  Aligned_cols=84  Identities=10%  Similarity=0.010  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                      -+-.+.+.|.+.|++++|.+.|++.. ..|+ ..+|..+-.+|.+.|++++|.+.++++.++.|.+...|..+..+|.+.
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            34567788999999999999999854 5554 889999999999999999999999999988887666565555555555


Q ss_pred             Cchhhh
Q 043686          142 AKWDVV  147 (282)
Q Consensus       142 g~~~~A  147 (282)
                      |+...+
T Consensus        86 g~~~~~   91 (128)
T d1elra_          86 GNSYFK   91 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.81  E-value=2.4e-05  Score=54.41  Aligned_cols=83  Identities=12%  Similarity=-0.006  Sum_probs=70.5

Q ss_pred             HHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhH
Q 043686           38 LHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKT  112 (282)
Q Consensus        38 l~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~  112 (282)
                      -..+.+.|++++|...|+  ....| +...|..+..+|.+.|++++|...|++.. +.|+ ..+|..|...|.+.|++++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHH
Confidence            345777899999999999  55667 47889999999999999999999999854 5665 8899999999999999999


Q ss_pred             HHHHHHHH
Q 043686          113 GKRVIDQL  120 (282)
Q Consensus       113 A~~~~~~m  120 (282)
                      |.+.+++.
T Consensus       103 A~~~l~~~  110 (112)
T d1hxia_         103 ALASLRAW  110 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=6.7e-05  Score=56.16  Aligned_cols=89  Identities=9%  Similarity=-0.017  Sum_probs=69.1

Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-C---CC-------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-M---ER-------------YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-~---~p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      +....+.|.+.|++++|.+.|.+.. +   .+             ...+|+.+..+|.+.|++++|...+++...++|++
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~   95 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN   95 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccc
Confidence            3344556667777777777776531 0   01             13567888889999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCchhhhhcccce
Q 043686          128 AENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       128 ~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      +.+|..+..+|...|++++|...+..
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~  121 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQK  121 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999998665443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=0.0001  Score=59.98  Aligned_cols=151  Identities=7%  Similarity=-0.093  Sum_probs=100.2

Q ss_pred             hhhhhcCChHHHHHHHHHhHHh---CCC-CCCHHHHHHHHHHHh-cCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686            3 LGYSLHGQRELGLSLFSELEKK---SSI-EIDPLTFAAVLHACS-TAGMVEEGWLCFN--------RIRSPK-VTHHALM   68 (282)
Q Consensus         3 ~~~~~~g~~~~A~~lf~~m~~~---~g~-~p~~~ty~~ll~a~~-~~g~~~~a~~l~~--------~g~~p~-~~~~~~l   68 (282)
                      ..|.+.|++++|++.|++..+-   .|- .....++..+...|- ..|++++|.+.+.        .+-.+. ..+|..+
T Consensus        85 ~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~l  164 (290)
T d1qqea_          85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC  164 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence            4677899999999999975430   111 111345555666664 5699999999998        222232 4568889


Q ss_pred             HHHHHccCChHHHHHHHHhcC-CCCC-------H-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChh-----HHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH-MERY-------P-EVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAE-----NYIML  134 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~-~~p~-------~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~-----~~~~L  134 (282)
                      ...|.+.|++++|.+.|++.. ..|+       . ..|..++..+...|+++.|.+.+++..++.|....     ....|
T Consensus       165 a~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l  244 (290)
T d1qqea_         165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL  244 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHH
Confidence            999999999999999999853 2221       1 23445566777889999999999999988774322     34556


Q ss_pred             HHHHHHc--Cchhhhhcccce
Q 043686          135 SNWYAAE--AKWDVVNQAYSW  153 (282)
Q Consensus       135 i~~y~~~--g~~~~A~~~~~~  153 (282)
                      +.+|-..  +++++|...++.
T Consensus       245 ~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         245 IDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             HHHHHTTCTTTHHHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHH
Confidence            6776552  346677665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.64  E-value=0.00012  Score=53.61  Aligned_cols=89  Identities=6%  Similarity=-0.156  Sum_probs=69.5

Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC-------CCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH-------MERY-----------PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL  126 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~-------~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~  126 (282)
                      +..-.+.+.+.|++.+|...|.+..       ..++           +.+|+.+..+|.+.|++++|.+.+++..+++|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            3334455666677777777766521       1111           347888999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHcCchhhhhcccce
Q 043686          127 SAENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       127 ~~~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      ++.+|..+..+|...|++++|...+..
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~  126 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKENLYK  126 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999875544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00029  Score=47.11  Aligned_cols=72  Identities=13%  Similarity=0.036  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHccCChHHHHHHHHhcC--------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQEYH--------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIML  134 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~m~--------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~L  134 (282)
                      .+--+...+.+.|++++|.+.|++..        ..++ ..+++.|-.+|.+.|++++|.+.++++.+++|+++.+++.+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34467778889999999999887731        2334 67899999999999999999999999999999998887766


Q ss_pred             H
Q 043686          135 S  135 (282)
Q Consensus       135 i  135 (282)
                      -
T Consensus        87 ~   87 (95)
T d1tjca_          87 K   87 (95)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.57  E-value=0.00016  Score=53.78  Aligned_cols=87  Identities=5%  Similarity=-0.062  Sum_probs=67.0

Q ss_pred             HHHHHHHccCChHHHHHHHHhc-----------------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCh
Q 043686           67 LMVSVLARAGLFDEARIFIQEY-----------------HMERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSA  128 (282)
Q Consensus        67 ~li~~~~~~g~~~~A~~l~~~m-----------------~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~  128 (282)
                      .....+.+.|++++|.+.|.+.                 .+.|. ...|+.+-.+|.+.|++++|...+.+..+++|+++
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~  111 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT  111 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh
Confidence            3344455555555555555442                 12343 66788889999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHcCchhhhhcccce
Q 043686          129 ENYIMLSNWYAAEAKWDVVNQAYSW  153 (282)
Q Consensus       129 ~~~~~Li~~y~~~g~~~~A~~~~~~  153 (282)
                      .+|..+..+|.+.|++++|...+..
T Consensus       112 ~a~~~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1         112 KALYRRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHhHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999999999765443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00029  Score=57.28  Aligned_cols=147  Identities=10%  Similarity=0.022  Sum_probs=108.0

Q ss_pred             hhhhcCChHHHHHHHHHhHHhC----CCCCCHHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCC--ChhHHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKS----SIEIDPLTFAAVLHACSTAGMVEEGWLCFN--------RIRSP--KVTHHALMV   69 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~----g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p--~~~~~~~li   69 (282)
                      .+...|+++.|...+..... .    +......++......+...|...++...+.        .+..+  ....+..+.
T Consensus       142 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T d1hz4a_         142 LLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV  220 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred             HHHHhcchhhhHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHH
Confidence            46678999999999988765 3    222334556666667777888888887776        22212  134566777


Q ss_pred             HHHHccCChHHHHHHHHhcC-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHH------hcCCCChhHHHHHHHH
Q 043686           70 SVLARAGLFDEARIFIQEYH-MER-----YPEVLRALLEGCRIHVQVKTGKRVIDQLC------ELKPLSAENYIMLSNW  137 (282)
Q Consensus        70 ~~~~~~g~~~~A~~l~~~m~-~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~p~~~~~~~~Li~~  137 (282)
                      ..+...|+.++|...+.+.. ..|     ....+..+...|...|++++|.+.+++..      +..|....++..+...
T Consensus       221 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  300 (366)
T d1hz4a_         221 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL  300 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHH
Confidence            78889999999999998854 222     25667778889999999999999999887      2345455678889999


Q ss_pred             HHHcCchhhhhccc
Q 043686          138 YAAEAKWDVVNQAY  151 (282)
Q Consensus       138 y~~~g~~~~A~~~~  151 (282)
                      |.+.|++++|.+.+
T Consensus       301 ~~~~g~~~~A~~~l  314 (366)
T d1hz4a_         301 YWQAGRKSDAQRVL  314 (366)
T ss_dssp             HHHHTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHH
Confidence            99999999986644

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.54  E-value=3.6e-05  Score=56.19  Aligned_cols=61  Identities=11%  Similarity=0.103  Sum_probs=44.0

Q ss_pred             CChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC-----------ChhHHHHHHHHHHhcCCCChhHHHHHHH
Q 043686           76 GLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHV-----------QVKTGKRVIDQLCELKPLSAENYIMLSN  136 (282)
Q Consensus        76 g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~p~~~~~~~~Li~  136 (282)
                      +.+++|.+.|++.. +.|+ ..+|+.+-.+|...|           ++++|.+.|++...++|++...+..|-.
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~  128 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  128 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH
Confidence            34577888887754 5665 778888888876654           3688999999999999988555554433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.0014  Score=52.93  Aligned_cols=143  Identities=8%  Similarity=-0.077  Sum_probs=105.4

Q ss_pred             hhhhcCChHHHHHHHHHhHHhCCCCCC------HHHHHHHHHHHhcCCCHHHHHHHhh--------ccCCCC-hhHHHHH
Q 043686            4 GYSLHGQRELGLSLFSELEKKSSIEID------PLTFAAVLHACSTAGMVEEGWLCFN--------RIRSPK-VTHHALM   68 (282)
Q Consensus         4 ~~~~~g~~~~A~~lf~~m~~~~g~~p~------~~ty~~ll~a~~~~g~~~~a~~l~~--------~g~~p~-~~~~~~l   68 (282)
                      .+...|++++|+++|++-.+   ..|+      ...++.+-..+...|++++|...|+        .+-.+. ..++..+
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~---~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALE---ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHh---hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            46789999999999999776   3343      2456667778899999999999998        222222 4466778


Q ss_pred             HHHHHccCChHHHHHHHHhcC---------CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----ChhHHHH
Q 043686           69 VSVLARAGLFDEARIFIQEYH---------MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPL-----SAENYIM  133 (282)
Q Consensus        69 i~~~~~~g~~~~A~~l~~~m~---------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~-----~~~~~~~  133 (282)
                      ...|...|++..|...+.+..         ..+. ..++..+...+...|++++|...+.......|.     ...++..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            888999999999999887631         1122 346667778899999999999999998854332     2345556


Q ss_pred             HHHHHHHcCchhhhhc
Q 043686          134 LSNWYAAEAKWDVVNQ  149 (282)
Q Consensus       134 Li~~y~~~g~~~~A~~  149 (282)
                      +...|...+..+++..
T Consensus       178 ~~~~~~~~~~~~~a~~  193 (366)
T d1hz4a_         178 LIQCSLARGDLDNARS  193 (366)
T ss_dssp             HHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhhhhHHHHHH
Confidence            6677778888887766

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=8.4e-05  Score=52.48  Aligned_cols=88  Identities=6%  Similarity=-0.104  Sum_probs=71.0

Q ss_pred             HHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCC--hhHHHHHHHHH
Q 043686           66 ALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQ---VKTGKRVIDQLCELKPLS--AENYIMLSNWY  138 (282)
Q Consensus        66 ~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~p~~--~~~~~~Li~~y  138 (282)
                      ..|++.+...+++++|++.|++.. ..| +..++..+..++.+.++   +++|.++|++.....|.+  +.++..|..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            467888899999999999999854 455 58899999999987655   457999999988777643  34778899999


Q ss_pred             HHcCchhhhhcccce
Q 043686          139 AAEAKWDVVNQAYSW  153 (282)
Q Consensus       139 ~~~g~~~~A~~~~~~  153 (282)
                      .+.|++++|.+.+..
T Consensus        83 ~~~g~~~~A~~~~~~   97 (122)
T d1nzna_          83 YRLKEYEKALKYVRG   97 (122)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHH
Confidence            999999999875554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00035  Score=49.38  Aligned_cols=91  Identities=8%  Similarity=0.044  Sum_probs=66.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCChHHHHHHHHhcC-CCC---C-----HHHHHHHHH
Q 043686           35 AAVLHACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLFDEARIFIQEYH-MER---Y-----PEVLRALLE  102 (282)
Q Consensus        35 ~~ll~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p---~-----~~~~~~li~  102 (282)
                      -.+-+.+.+.|++++|.+.|.  ..+.| +...|..+..+|.+.|++++|.+.+++.. +.|   +     ..+|..+-.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            344456777788888888887  44455 46778888888888888888888887743 122   1     346777778


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCC
Q 043686          103 GCRIHVQVKTGKRVIDQLCELKP  125 (282)
Q Consensus       103 ~~~~~g~~~~A~~~~~~m~~~~p  125 (282)
                      .+...+++++|.+.|++.....|
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~~~  110 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAEHR  110 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCC
Confidence            88888889999999888877666

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.37  E-value=0.00045  Score=52.00  Aligned_cols=59  Identities=14%  Similarity=-0.018  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcccc
Q 043686           94 PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus        94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +..+..+...+.+.|++++|...++.+.+.+|.+...|..|+.+|.+.|+.++|.+.|.
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~  125 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR  125 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999998865543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.26  E-value=0.0013  Score=49.45  Aligned_cols=63  Identities=6%  Similarity=0.032  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHccCChHHHHHHHHhcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH-------hcCC
Q 043686           63 THHALMVSVLARAGLFDEARIFIQEYH-MER-YPEVLRALLEGCRIHVQVKTGKRVIDQLC-------ELKP  125 (282)
Q Consensus        63 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~p  125 (282)
                      ..+..+...+.+.|++++|...+++.. ..| +...|..++.+|.+.|+.++|.+.|++..       ++.|
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            467788999999999999999999965 566 58999999999999999999999999984       5778

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=5.1e-05  Score=62.85  Aligned_cols=130  Identities=13%  Similarity=0.029  Sum_probs=75.7

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHH-HHHhcCCCHHHHHHHhh--ccCCC-ChhHHHHHHHHHHccCCh-----
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVL-HACSTAGMVEEGWLCFN--RIRSP-KVTHHALMVSVLARAGLF-----   78 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll-~a~~~~g~~~~a~~l~~--~g~~p-~~~~~~~li~~~~~~g~~-----   78 (282)
                      .+++++|+..+.+..+ .. +++...+...+ ..+...|..++|...++  ....| +...|+.+...|.+.|+.     
T Consensus       122 ~~~~~~a~~~~~~al~-~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         122 EPNWARELELCARFLE-AD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SCCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHh-hC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            3457788888888766 21 23344444443 45566778888888777  44555 355566655555555443     


Q ss_pred             -----------------------------------------------------------HHHHHHHHhcC-CCCC-HHHH
Q 043686           79 -----------------------------------------------------------DEARIFIQEYH-MERY-PEVL   97 (282)
Q Consensus        79 -----------------------------------------------------------~~A~~l~~~m~-~~p~-~~~~   97 (282)
                                                                                 ++|.+.+.+.. ..|+ ..+|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  279 (334)
T d1dcea1         200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI  279 (334)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHH
Confidence                                                                       33333333322 3333 4556


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           98 RALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        98 ~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      ..+...|.+.|+.++|.+.|++..+++|++...|..|...+.
T Consensus       280 ~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            666666777777777777777777777766556665554444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00014  Score=63.91  Aligned_cols=117  Identities=5%  Similarity=-0.213  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhhccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcC
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFNRIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHV  108 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g  108 (282)
                      ..+..+-..+.+.|+.++|...+...+.|+ ..++..|.+.+...|++++|.+.|++.. ..|+ ..+|+.|-..|...|
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            355555566777778888777776333343 2467788899999999999999999854 6776 689999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhh
Q 043686          109 QVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVN  148 (282)
Q Consensus       109 ~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~  148 (282)
                      +..+|...|.+...+.|+.+.++..|...|.+..+..++.
T Consensus       201 ~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~  240 (497)
T d1ya0a1         201 DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV  240 (497)
T ss_dssp             CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred             CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhh
Confidence            9999999999999988888899999999998876654443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.19  E-value=0.00016  Score=58.14  Aligned_cols=124  Identities=12%  Similarity=-0.053  Sum_probs=89.7

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEI-DPLTFAAVLHACSTAGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDE   80 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p-~~~ty~~ll~a~~~~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~   80 (282)
                      ..+.|++++|+..|++-.+   ..| |...+..+...++..|++++|...++  ..+.|+ ...+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            3567999999999999887   445 55788999999999999999999999  667775 4555555555554444444


Q ss_pred             HHHHHHhcC--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHH
Q 043686           81 ARIFIQEYH--MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENY  131 (282)
Q Consensus        81 A~~l~~~m~--~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~  131 (282)
                      +..-...-.  ..|+ ...+......+.+.|+.++|.+++++..+..|.....+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            333222211  2343 44555566678899999999999999998888665444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.18  E-value=0.0015  Score=48.24  Aligned_cols=88  Identities=8%  Similarity=-0.024  Sum_probs=65.9

Q ss_pred             HHHHHHHHHccCChHHHHHHHHhcC------CCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 043686           65 HALMVSVLARAGLFDEARIFIQEYH------MER-----------YPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLS  127 (282)
Q Consensus        65 ~~~li~~~~~~g~~~~A~~l~~~m~------~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~  127 (282)
                      +.-....+.+.|++++|.+.|++.-      ..+           ...+|+.+-.+|.+.|++++|...+++...++|++
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~   97 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN   97 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccch
Confidence            3344455566666666666665421      111           13457778888999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHcCchhhhhcccc
Q 043686          128 AENYIMLSNWYAAEAKWDVVNQAYS  152 (282)
Q Consensus       128 ~~~~~~Li~~y~~~g~~~~A~~~~~  152 (282)
                      +.+|..+..+|...|++++|...+.
T Consensus        98 ~~a~~~~~~~~~~l~~~~~A~~~~~  122 (168)
T d1kt1a1          98 EKGLYRRGEAQLLMNEFESAKGDFE  122 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999888866443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00043  Score=60.73  Aligned_cols=134  Identities=10%  Similarity=-0.068  Sum_probs=79.4

Q ss_pred             CCCHHHHHHHhh--ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 043686           44 AGMVEEGWLCFN--RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYHMERY-PEVLRALLEGCRIHVQVKTGKRVIDQ  119 (282)
Q Consensus        44 ~g~~~~a~~l~~--~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~  119 (282)
                      .+.++.|...+.  .++.|+ ...+..+...+.+.|+.++|...+.... .++ ..++..|...+...|++++|...|++
T Consensus        99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~  177 (497)
T d1ya0a1          99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIARYRNQTSQAESYYRH  177 (497)
T ss_dssp             HHHHHHHHHHHTC-------------------------------CCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            355666666666  566664 6678888888999999999988776643 333 35778888899999999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHHcCchhhhhcccceeeecCeEEEEecCCCCCCChHHHHHHHHHHHHHHHhC
Q 043686          120 LCELKPLSAENYIMLSNWYAAEAKWDVVNQAYSWIEFRNKVHVFGTGDVSCPRSEGIFWELQSLMKKMEGD  190 (282)
Q Consensus       120 m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~l~~~M~~~  190 (282)
                      ..++.|++..+|+.|...|...|+..+|..-+..-            ..-...+..|...+..+|+...+.
T Consensus       178 A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra------------l~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         178 AAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS------------IAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH------------HSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH------------HhCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999998744331            122334566777777777776644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.90  E-value=0.0035  Score=45.44  Aligned_cols=91  Identities=15%  Similarity=0.050  Sum_probs=59.0

Q ss_pred             HHHHHH--HHHhcCCCHHHHHHHhh-----ccCCCC----------hhHHHHHHHHHHccCChHHHHHHHHhcC------
Q 043686           33 TFAAVL--HACSTAGMVEEGWLCFN-----RIRSPK----------VTHHALMVSVLARAGLFDEARIFIQEYH------   89 (282)
Q Consensus        33 ty~~ll--~a~~~~g~~~~a~~l~~-----~g~~p~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~------   89 (282)
                      +|..+-  ....+.|++++|.+.|+     ..-.|+          ...|+.+..+|.+.|++++|.+-+++..      
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            455442  33445677777777777     111111          3567778888888888888887776632      


Q ss_pred             --CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 043686           90 --MERY-----PEVLRALLEGCRIHVQVKTGKRVIDQLCEL  123 (282)
Q Consensus        90 --~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  123 (282)
                        ..|+     ..+|+.+-.+|.+.|++++|.+.|++..++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              2222     235677778888888888888888887754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.90  E-value=0.00075  Score=49.28  Aligned_cols=89  Identities=9%  Similarity=-0.114  Sum_probs=67.2

Q ss_pred             hHHHHH--HHHHHccCChHHHHHHHHhcC----CCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--
Q 043686           63 THHALM--VSVLARAGLFDEARIFIQEYH----MERY----------PEVLRALLEGCRIHVQVKTGKRVIDQLCELK--  124 (282)
Q Consensus        63 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~----~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--  124 (282)
                      .+|..+  ...+.+.|++++|.+.|++..    -.|+          ..+|+.+-.+|.+.|++++|.+.+++...+.  
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            466666  555667899999999998842    1222          4689999999999999999999999988432  


Q ss_pred             -----CCC----hhHHHHHHHHHHHcCchhhhhccc
Q 043686          125 -----PLS----AENYIMLSNWYAAEAKWDVVNQAY  151 (282)
Q Consensus       125 -----p~~----~~~~~~Li~~y~~~g~~~~A~~~~  151 (282)
                           |+.    ...|+.+..+|.+.|++++|...+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~  123 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  123 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                 211    235667888999999999987644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.81  E-value=0.0014  Score=52.50  Aligned_cols=78  Identities=14%  Similarity=0.045  Sum_probs=59.6

Q ss_pred             HccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHcCchhhhhcc
Q 043686           73 ARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAEAKWDVVNQA  150 (282)
Q Consensus        73 ~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~g~~~~A~~~  150 (282)
                      -+.|++++|.+.+++.. ..|+ ...+..|...|+..|++++|.+.|+...++.|++...+..+...+...+..+++...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            35688888888888743 4564 788888888888888888888888888888887777777777777666666666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.76  E-value=0.00058  Score=49.43  Aligned_cols=73  Identities=14%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             HHccCChHHHHHHHHhcC-CCCC-HHHHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 043686           72 LARAGLFDEARIFIQEYH-MERY-PEVLRALLEGCRIH----------VQVKTGKRVIDQLCELKPLSAENYIMLSNWYA  139 (282)
Q Consensus        72 ~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~  139 (282)
                      |-+.+.+++|.+.|+... ..|+ ..+|+.+-.+|...          +.+++|...|++..+++|+++.+|..+...|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            345667889999998854 5665 77787777777643          45688999999999999999999999999998


Q ss_pred             HcCch
Q 043686          140 AEAKW  144 (282)
Q Consensus       140 ~~g~~  144 (282)
                      ..|++
T Consensus        87 ~~g~~   91 (145)
T d1zu2a1          87 SFAFL   91 (145)
T ss_dssp             HHHHH
T ss_pred             Hcccc
Confidence            87764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.026  Score=36.93  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHhh---------ccCCCC-hhHHHHHHHHHHccCChHHHHHHHHhcC-CCCC-HHHHHH
Q 043686           32 LTFAAVLHACSTAGMVEEGWLCFN---------RIRSPK-VTHHALMVSVLARAGLFDEARIFIQEYH-MERY-PEVLRA   99 (282)
Q Consensus        32 ~ty~~ll~a~~~~g~~~~a~~l~~---------~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~p~-~~~~~~   99 (282)
                      ..+--+-..+.+.|++++|...|+         ....++ ..+++.|..+|.+.|++++|.+.+++.. +.|+ ..+++.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            334455667788888888888887         112223 4678899999999999999999999854 6776 666665


Q ss_pred             H
Q 043686          100 L  100 (282)
Q Consensus       100 l  100 (282)
                      +
T Consensus        86 l   86 (95)
T d1tjca_          86 L   86 (95)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.08  E-value=0.1  Score=42.58  Aligned_cols=123  Identities=9%  Similarity=0.029  Sum_probs=50.9

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHHHHH
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEARIF   84 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l   84 (282)
                      |.+.|.++.|..+|..+..          |.-++..+.+.++++.|.+++..-  -+..+|.-+...+.+.....-|.-+
T Consensus        24 c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~~~e~~la~i~   91 (336)
T d1b89a_          24 CYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMC   91 (336)
T ss_dssp             -----CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3466666666666666544          445555555555555555555410  0222444444444433333222111


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 043686           85 IQEYHMERYPEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAENYIMLSNWYAAE  141 (282)
Q Consensus        85 ~~~m~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~~~~Li~~y~~~  141 (282)
                        ......+...-..++..|-..|.+++...+++...+..+.+...++-|+..|++.
T Consensus        92 --~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          92 --GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             --TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             --HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence              1111112222233444444444444444444444333333434444444444443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.87  E-value=0.95  Score=36.58  Aligned_cols=139  Identities=9%  Similarity=0.036  Sum_probs=94.5

Q ss_pred             hhhhhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCCChhHHHHHHHHHHccCChHHH
Q 043686            2 ILGYSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSPKVTHHALMVSVLARAGLFDEA   81 (282)
Q Consensus         2 i~~~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p~~~~~~~li~~~~~~g~~~~A   81 (282)
                      +..|.+.++++.|.+++.+..       +..+|.-+..+|.+.....-+.- -......+......++..|-..|.+++.
T Consensus        47 ~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~L  118 (336)
T d1b89a_          47 ASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEEL  118 (336)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHH
Confidence            455677788888888776542       45689999999998877655433 2233334555557899999999999999


Q ss_pred             HHHHHhc-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCC-------ChhHHHHHHHHHHHcCchhhhhc
Q 043686           82 RIFIQEY-H-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC-ELKPL-------SAENYIMLSNWYAAEAKWDVVNQ  149 (282)
Q Consensus        82 ~~l~~~m-~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~p~-------~~~~~~~Li~~y~~~g~~~~A~~  149 (282)
                      ..+++.. . -.++...++-++..|++.+ .++-.+.++... ..+|+       ...-|.-++-.|.+.|.+++|..
T Consensus       119 i~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~  195 (336)
T d1b89a_         119 ITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  195 (336)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence            9999974 2 2566888999999999985 344444444332 11221       12345667788888888887765

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.99  E-value=0.23  Score=34.04  Aligned_cols=71  Identities=15%  Similarity=0.068  Sum_probs=50.4

Q ss_pred             CChhHHHHHHHHHHcc---CChHHHHHHHHhcC-CCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCChhH
Q 043686           60 PKVTHHALMVSVLARA---GLFDEARIFIQEYH-MER-Y-PEVLRALLEGCRIHVQVKTGKRVIDQLCELKPLSAEN  130 (282)
Q Consensus        60 p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~-~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~p~~~~~  130 (282)
                      |++.|--...-++.+.   .++++|..+|++.- ..| + ...+..|--+|.+.|++++|.+.++...+++|++.-.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            3333333334444443   45678888888854 344 3 3577778889999999999999999999999988443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.91  E-value=1.6  Score=28.21  Aligned_cols=46  Identities=11%  Similarity=0.018  Sum_probs=21.3

Q ss_pred             ccCCCChhHHHHHHHHHHccCChHHHHHHHHhcC--CCCCHHHHHHHH
Q 043686           56 RIRSPKVTHHALMVSVLARAGLFDEARIFIQEYH--MERYPEVLRALL  101 (282)
Q Consensus        56 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--~~p~~~~~~~li  101 (282)
                      ..+.|+..+..+-+.++.|.+++..|.++|+..+  +.++..+|..++
T Consensus        35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil   82 (105)
T d1v54e_          35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   82 (105)
T ss_dssp             SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4444555555555555555555555555554443  333333444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=83.09  E-value=4.8  Score=26.87  Aligned_cols=111  Identities=5%  Similarity=-0.038  Sum_probs=69.3

Q ss_pred             cCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhhccCCC-ChhHHHHHHHHHHc----cCChHHHH
Q 043686            8 HGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFNRIRSP-KVTHHALMVSVLAR----AGLFDEAR   82 (282)
Q Consensus         8 ~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~~g~~p-~~~~~~~li~~~~~----~g~~~~A~   82 (282)
                      ..++++|++.|.+-.+ .|-.   .....|.  .....+.++|.++++..... +...+..|-..|..    ..+.++|.
T Consensus         6 ~kd~~~A~~~~~kaa~-~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACE-LNEM---FGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHH-CCCh---hhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHH
Confidence            3467899999999887 6632   2222232  34456788888888811111 34445555555543    45678899


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 043686           83 IFIQEYHMERYPEVLRALLEGCRI----HVQVKTGKRVIDQLCELK  124 (282)
Q Consensus        83 ~l~~~m~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~  124 (282)
                      ++|++---.-+......|-..|.+    ..+.++|.+.|+...+..
T Consensus        80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            998885312345555556555554    457888888888877544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=80.87  E-value=6.4  Score=26.80  Aligned_cols=113  Identities=14%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             hhhcCChHHHHHHHHHhHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHhh-cc----CCC----------------Chh
Q 043686            5 YSLHGQRELGLSLFSELEKKSSIEIDPLTFAAVLHACSTAGMVEEGWLCFN-RI----RSP----------------KVT   63 (282)
Q Consensus         5 ~~~~g~~~~A~~lf~~m~~~~g~~p~~~ty~~ll~a~~~~g~~~~a~~l~~-~g----~~p----------------~~~   63 (282)
                      +.-.|.+++..++..+... +   .+..-||-+|--....-+-+-..+.++ -|    +.|                +..
T Consensus        12 ~ildG~ve~Gveii~k~~~-s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se   87 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITK-S---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNE   87 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHH-H---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCH
T ss_pred             HHHhhhHHhHHHHHHHHcc-c---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHH
Confidence            3456888999999988776 2   344556665554444444444444444 11    111                122


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHh-cC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 043686           64 HHALMVSVLARAGLFDEARIFIQE-YH-MERYPEVLRALLEGCRIHVQVKTGKRVIDQLC  121 (282)
Q Consensus        64 ~~~~li~~~~~~g~~~~A~~l~~~-m~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  121 (282)
                      ...--++.+.+.|+-|.-.+++++ .+ -+|+....-.+-++|.+.|...+|.+++.+..
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~AC  147 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC  147 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            233334555566666666666555 22 35555666666667777777777777776665