Citrus Sinensis ID: 043688

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
Protein Sequence
MATTAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMNCENRTKVAEAEELSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEccHHHHHHHHHHHcHHHHHccHHHHHHHHcccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcHHccccccccccEEEEEEEcccEEEEEEccEEEEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHcHHHHHHHcHHHccccccccEcccccccHHHEccccccccccccccccccccHccccHHHHcccccccHHHccccccEEEEcccccEcccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEcHHHHHHHHHHHHccccccccHHHHHHHHHccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEcccEEcEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MATTAVENVTAKAEALVLQKATAIGevakenvgcengtkvAEDQNAIAELAKEKMNCENRTKVAEAEELSDERVQEDKektgnevrkeeakediavevepktgvsfpvklndgkqlncvglrKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKkltggkkndeLANKVMGHAsedikltsgsvieisrlpgytlQARVMDQVVSNVESELLCKAYIHMYlgddafdkdAKEKLGMSLLSLF
Flexible Loop (DISEMBL)
mattavenvtakaeALVLQKATAIgevakenvgcengtkvaEDQNAIAELAkekmncenrtkvaeaeelsdervqedkektgnevrkeeakediavevepktgvsfpvklndgkqlncVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQtvidsdagmtVRIVIVFSNLTMSMVKKNFDEGLGASIKkltggkkndELANKVMGhasedikltsgsvieISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Low Complexity Region (SEG)
MATTAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMNCENRTKVAEAEELSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Disordered region (IsUnstruct)
************AEALVLQKATAIGEVAKENVGC********************************************************************GVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASI**********************DIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAF****************
Disordered Region (DISOPRED)
********VTAKAEALVLQKATAIGEVAKENV***************************************************************VEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKL******************MYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGL***************LANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Disordered Region (DISEMBL)
**********AKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMNCENRTKV***************************KEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Disordered Region (DISPRO)
***TAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKE**************************************EDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
359488858	281	PREDICTED: uncharacterized protein LOC10	0.948	0.985	0.645	4e-97
296087597	262	unnamed protein product [Vitis vinifera]	0.821	0.916	0.704	2e-94
378749116	252	chalcone isomerase [Camellia chekiangole	0.859	0.996	0.631	3e-92
255560930	268	conserved hypothetical protein [Ricinus	0.756	0.824	0.722	6e-88
113202134	240	chalcone isomerase [Camellia sinensis]	0.818	0.995	0.615	4e-85
441420656	240	chalcone isomerase [Camellia sinensis]	0.818	0.995	0.615	9e-85
350534898	262	CHI protein [Solanum lycopersicum] gi|33	0.654	0.729	0.781	4e-82
394986657	214	chalcone isomerase-like protein [Cannabi	0.705	0.962	0.556	1e-58
345294347	218	chalcone isomerase [Solanum tuberosum]	0.400	0.536	0.648	4e-42
345294349	218	chalcone isomerase [Solanum tuberosum]	0.400	0.536	0.648	1e-41

>gi|359488858|ref|XP_002272854.2| PREDICTED: uncharacterized protein LOC100243977 [Vitis vinifera]

 Score =  360 bits (924), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 191/296 (64%), Positives = 230/296 (77%), Gaps = 19/296 (6%)

Query: 1   MATTAVENVTAKAEALVLQKATAIG---EVAKENVGCENGTKVAEDQNAIAELAKEKMNC 57
           MATT VE+V AKAE + ++  T +    ++ KE     NGT+             + MN 
Sbjct: 1   MATT-VEDVIAKAEMVEIEPKTGVALKPQLLKEE--KVNGTE------------PKPMNG 45

Query: 58  ENRTKVAEAEELSDERVQEDKEKTGNEVRKEEAK-EDIAVEVEPKTGVSFPVKLNDGKQL 116
               +V + E + +E+ +  KE     V K+E K E++AVE+EPKTGVSFPVK+ DGKQL
Sbjct: 46  VKADEVGKNEGVPEEKAEARKEAANGGVPKDEGKKEEVAVEIEPKTGVSFPVKVEDGKQL 105

Query: 117 NCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMT 176
           N VGLRKK++LGLGIKIYGFGIYAD EKLK+LL+SKIGKA AK TK+MYQ VIDSD  M 
Sbjct: 106 NAVGLRKKAILGLGIKIYGFGIYADQEKLKDLLKSKIGKAPAKPTKDMYQVVIDSDLWMM 165

Query: 177 VRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIE 236
           VR+VIV+S LTMSMV+KNFDEGLGASIKKLTGG++NDEL+NKVMG AS+DIKLTSGSVIE
Sbjct: 166 VRLVIVYSGLTMSMVRKNFDEGLGASIKKLTGGRRNDELSNKVMGEASDDIKLTSGSVIE 225

Query: 237 ISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292
           I+RLPGYTL+ +VM +VVS VESELLC+AYIHMYLGDDAFDKDA+EK G+SLLSLF
Sbjct: 226 ITRLPGYTLETKVMGEVVSKVESELLCRAYIHMYLGDDAFDKDAREKFGVSLLSLF 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087597|emb|CBI34853.3| unnamed protein product [Vitis vinifera]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/250 (70%), Positives = 208/250 (83%), Gaps = 10/250 (4%)

Query: 53  EKMNCENRTKVA-EAEELSDERVQEDKEKTGNEVRKEEA---------KEDIAVEVEPKT 102
           E +  E +T VA + + L +E+V   + K  N V+ +E          KE++AVE+EPKT
Sbjct: 13  EMVEIEPKTGVALKPQLLKEEKVNGTEPKPMNGVKADEVGKNEGDEGKKEEVAVEIEPKT 72

Query: 103 GVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATK 162
           GVSFPVK+ DGKQLN VGLRKK++LGLGIKIYGFGIYAD EKLK+LL+SKIGKA AK TK
Sbjct: 73  GVSFPVKVEDGKQLNAVGLRKKAILGLGIKIYGFGIYADQEKLKDLLKSKIGKAPAKPTK 132

Query: 163 EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGH 222
           +MYQ VIDSD  M VR+VIV+S LTMSMV+KNFDEGLGASIKKLTGG++NDEL+NKVMG 
Sbjct: 133 DMYQVVIDSDLWMMVRLVIVYSGLTMSMVRKNFDEGLGASIKKLTGGRRNDELSNKVMGE 192

Query: 223 ASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKE 282
           AS+DIKLTSGSVIEI+RLPGYTL+ +VM +VVS VESELLC+AYIHMYLGDDAFDKDA+E
Sbjct: 193 ASDDIKLTSGSVIEITRLPGYTLETKVMGEVVSKVESELLCRAYIHMYLGDDAFDKDARE 252

Query: 283 KLGMSLLSLF 292
           K G+SLLSLF
Sbjct: 253 KFGVSLLSLF 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378749116|gb|AFC37245.1| chalcone isomerase [Camellia chekiangoleosa]

 Score =  344 bits (883), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 185/293 (63%), Positives = 213/293 (72%), Gaps = 42/293 (14%)

Query: 1   MATTAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMNCENR 60
           MATT VE++TAKAE + L+  T                             +EK+N    
Sbjct: 1   MATT-VEDITAKAEMVSLEAQTP---------------------------KEEKVNGPES 32

Query: 61  TKVAEAEE-LSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCV 119
            K+A+ E   +DE+ Q  K            K+D+ VE EPKTGVSFP+KL+DGKQLN V
Sbjct: 33  NKIADGEMGKADEKPQMGK------------KDDVPVETEPKTGVSFPIKLDDGKQLNAV 80

Query: 120 GLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRI 179
           GLRKKS+LG+GIKIYGFGIYADNE LK+LLR+KIGKA  K TKEMYQ VIDSD GM VR+
Sbjct: 81  GLRKKSVLGMGIKIYGFGIYADNETLKDLLRTKIGKAPTKPTKEMYQLVIDSDVGMLVRL 140

Query: 180 VIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISR 239
           V+VFSNLTMSMV+KNFDE LGASIKKLTGG KNDEL  K+MG AS+DIKLT GSVIEISR
Sbjct: 141 VMVFSNLTMSMVRKNFDEVLGASIKKLTGG-KNDELTKKIMGEASDDIKLTCGSVIEISR 199

Query: 240 LPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292
           LPGY LQ +VMD+VVS VESELLC+AY HMYLGDD FDK+AKEK GM+LLSLF
Sbjct: 200 LPGYILQTKVMDEVVSKVESELLCRAYTHMYLGDDPFDKEAKEKFGMTLLSLF 252

Source: Camellia chekiangoleosa

Species: Camellia chekiangoleosa

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560930|ref|XP_002521478.1| conserved hypothetical protein [Ricinus communis] gi|223539377|gb|EEF40968.1| conserved hypothetical protein [Ricinus communis]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/227 (72%), Positives = 191/227 (84%), Gaps = 6/227 (2%)

Query: 72  ERVQEDKEKTGNEVR-----KEEAKEDI-AVEVEPKTGVSFPVKLNDGKQLNCVGLRKKS 125
           E+ QE+ +  G E       KE  KED+ A+EVEPKTGVSFPVKL+DGKQL  VGLRKK 
Sbjct: 42  EKGQEEMKIAGKEAESEAPEKEVKKEDVVALEVEPKTGVSFPVKLDDGKQLTSVGLRKKY 101

Query: 126 MLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSN 185
           MLG+GIKIYGFG+Y DN+ LK++L+ KIGKA AK TKEMYQ VI+SD  M +R+VIVFS+
Sbjct: 102 MLGMGIKIYGFGMYTDNDTLKDILKLKIGKAPAKPTKEMYQAVIESDVAMMMRLVIVFSS 161

Query: 186 LTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTL 245
           LTM+MVKKNFDEGLGA+I+KL GGKKNDELANKVMG AS+DIKLTSGSVIEISRLPG+ L
Sbjct: 162 LTMNMVKKNFDEGLGAAIRKLNGGKKNDELANKVMGQASDDIKLTSGSVIEISRLPGHVL 221

Query: 246 QARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292
           + +VM  V+S VESELLC+AY++MYLGDD FDKDAKEK GMSLLSLF
Sbjct: 222 ETKVMGGVISKVESELLCRAYVYMYLGDDPFDKDAKEKFGMSLLSLF 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113202134|gb|ABI33225.1| chalcone isomerase [Camellia sinensis]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 173/281 (61%), Positives = 201/281 (71%), Gaps = 42/281 (14%)

Query: 1   MATTAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMNCENR 60
           MATT VE++TAKA+ + L+  T                             +EK+N    
Sbjct: 1   MATT-VEDITAKAKMVSLEALTP---------------------------KEEKVNGPES 32

Query: 61  TKVAEAEE-LSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCV 119
            K+A+ E   +DE  Q  K            K+D+ VE EPKTGVSFP+KL+DGKQLN V
Sbjct: 33  NKIADGEMGKADEEPQMGK------------KDDVPVETEPKTGVSFPIKLDDGKQLNAV 80

Query: 120 GLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRI 179
           GLRKKS+LG+GIKIYGFGIYADNE LK+LLR+KIGKA  K TKEMYQ VIDSD GM VR+
Sbjct: 81  GLRKKSVLGIGIKIYGFGIYADNETLKDLLRTKIGKAPTKPTKEMYQLVIDSDVGMLVRL 140

Query: 180 VIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISR 239
           V+VFSNLTMSMV+KNFDE LGASIKKLTGG KNDEL  K+MG AS+DIKLT GS+IEISR
Sbjct: 141 VMVFSNLTMSMVRKNFDEVLGASIKKLTGG-KNDELTKKIMGEASDDIKLTCGSIIEISR 199

Query: 240 LPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDA 280
           LPGY LQ +VMD+VVS VESELLC+AY HMYLGDD FDK+A
Sbjct: 200 LPGYILQTKVMDEVVSKVESELLCRAYTHMYLGDDPFDKEA 240

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|441420656|gb|AGC30727.1| chalcone isomerase [Camellia sinensis]

 Score =  319 bits (817), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 173/281 (61%), Positives = 200/281 (71%), Gaps = 42/281 (14%)

Query: 1   MATTAVENVTAKAEALVLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMNCENR 60
           MATT VE++TAKA+ + L+  T                             +EK+N    
Sbjct: 1   MATT-VEDITAKAKMVSLEAXTP---------------------------KEEKVNGPES 32

Query: 61  TKVAEAEE-LSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCV 119
            K+A+ E   +DE  Q  K            K+D+ VE EPKTGVSFP+KL+DGKQLN V
Sbjct: 33  NKIADGEMGKADEEPQMGK------------KDDVPVETEPKTGVSFPIKLDDGKQLNAV 80

Query: 120 GLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRI 179
           GLRKKS+LG+GIKIYGFGIYADNE LK+LLR+KIGKA  K TKEMYQ VIDSD GM VR+
Sbjct: 81  GLRKKSVLGIGIKIYGFGIYADNETLKDLLRTKIGKAPTKPTKEMYQLVIDSDVGMLVRL 140

Query: 180 VIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISR 239
           V+VFSNLTMSMV+KNFDE LGASIKKLTGG KNDEL  K MG AS+DIKLT GS+IEISR
Sbjct: 141 VMVFSNLTMSMVRKNFDEVLGASIKKLTGG-KNDELTKKXMGEASDDIKLTCGSIIEISR 199

Query: 240 LPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDA 280
           LPGY LQ +VMD+VVS VESELLC+AY HMYLGDD FDK+A
Sbjct: 200 LPGYILQTKVMDEVVSKVESELLCRAYTHMYLGDDPFDKEA 240

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534898|ref|NP_001234421.1| CHI protein [Solanum lycopersicum] gi|33867695|gb|AAQ55182.1| putative chalcone isomerase [Solanum lycopersicum]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/192 (78%), Positives = 170/192 (88%), Gaps = 1/192 (0%)

Query: 101 KTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKA 160
           KTGVSFPVKL DGKQL  VGLRKKSMLG+GIKIYGFGIYADNEKLK+L++SKI KA AK 
Sbjct: 72  KTGVSFPVKLEDGKQLKAVGLRKKSMLGMGIKIYGFGIYADNEKLKDLMQSKIAKAPAKP 131

Query: 161 TKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVM 220
           TKEMYQ VIDSD GM +R+VIVFSNLTM+MV+KNFDEGLGA+IKKLTGG KN+EL  K+M
Sbjct: 132 TKEMYQMVIDSDLGMMMRLVIVFSNLTMNMVRKNFDEGLGAAIKKLTGG-KNEELTKKIM 190

Query: 221 GHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDA 280
           G AS+DIKL SGSVIEISRLPGY LQ +V  ++VS VESELLC+A+I+MYLGDD FDK+A
Sbjct: 191 GEASDDIKLNSGSVIEISRLPGYVLQTKVKGEIVSKVESELLCRAFIYMYLGDDPFDKEA 250

Query: 281 KEKLGMSLLSLF 292
           KEK G S+LSLF
Sbjct: 251 KEKFGTSMLSLF 262

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|394986657|gb|AFN42529.1| chalcone isomerase-like protein [Cannabis sativa]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 119/214 (55%), Positives = 158/214 (73%), Gaps = 8/214 (3%)

Query: 81  TGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFGIYA 140
           + N   KEEA     V+VEPKTG+SFPVKL+DGK L CVG  KKS+LGL IK YGFG+Y 
Sbjct: 7   SSNAATKEEA-----VQVEPKTGISFPVKLDDGKILYCVGYNKKSLLGLSIKAYGFGLYV 61

Query: 141 DNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLG 200
           D++KLK++L+SKI KA +K T+EMYQ  ID D GMT+++V+ FS + +SM KK F E + 
Sbjct: 62  DSDKLKDVLKSKIEKAPSKPTEEMYQLAIDGDFGMTIKMVVSFSGVKLSMAKKGFTEAMR 121

Query: 201 ASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESE 260
            S+KKLT G+KN+EL+NKV G  S+ IKL  GS + +S+LPGY L+ +V  ++VS VESE
Sbjct: 122 ESMKKLT-GQKNEELSNKVFGTTSDKIKLRLGSEMIVSKLPGYVLETKVNGELVSRVESE 180

Query: 261 LLCKAYIHMYLGDDAF--DKDAKEKLGMSLLSLF 292
           LLC+AY   YLG+D    +K+++E  G S+LSLF
Sbjct: 181 LLCRAYFRNYLGEDTLECEKESREMFGQSMLSLF 214

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345294347|gb|AEN83505.1| chalcone isomerase [Solanum tuberosum]

 Score =  177 bits (450), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 106/145 (73%), Gaps = 28/145 (19%)

Query: 101 KTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFG----------------------- 137
           KTGVSFPVKL DGKQL  VGLRKKSMLG+GIKIYGFG                       
Sbjct: 72  KTGVSFPVKLEDGKQLKAVGLRKKSMLGMGIKIYGFGNTPLNIYLLTYVLIYFYKNWSDY 131

Query: 138 ----IYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKK 193
               IYADNEKLK+L++SKI KA +K TKEMYQ VIDSD GM +R+VI+FSNLTM+MV+K
Sbjct: 132 LATGIYADNEKLKDLMQSKIAKAPSKPTKEMYQMVIDSDLGMMMRLVIIFSNLTMNMVRK 191

Query: 194 NFDEGLGASIKKLTGGKKNDELANK 218
           NFDEGLGA+IKKLTGG KN+EL  K
Sbjct: 192 NFDEGLGAAIKKLTGG-KNEELTKK 215

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345294349|gb|AEN83506.1| chalcone isomerase [Solanum tuberosum]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 105/145 (72%), Gaps = 28/145 (19%)

Query: 101 KTGVSFPVKLNDGKQLNCVGLRKKSMLGLGIKIYGFG----------------------- 137
           KTGVSFPVKL DGKQL  VG RKKSMLG+GIKIYGFG                       
Sbjct: 72  KTGVSFPVKLEDGKQLKAVGSRKKSMLGMGIKIYGFGNTPLNIYLLTYVLIYFYKNWSDY 131

Query: 138 ----IYADNEKLKELLRSKIGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKK 193
               IYADNEKLK+L++SKI KA +K TKEMYQ VIDSD GM +R+VIVFSNLTM+MV+K
Sbjct: 132 LATGIYADNEKLKDLMQSKIAKAPSKPTKEMYQIVIDSDLGMMMRLVIVFSNLTMNMVRK 191

Query: 194 NFDEGLGASIKKLTGGKKNDELANK 218
           NFDEGLGA+IKKLTGG KN+EL  K
Sbjct: 192 NFDEGLGAAIKKLTGG-KNEELTKK 215

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	292
TAIR|locus:2077229	279	FAP1 "fatty-acid-binding prote	0.630	0.659	0.375	7.7e-32
TAIR|locus:2057751	398	FAP2 "fatty-acid-binding prote	0.955	0.701	0.242	1.4e-15

TAIR|locus:2077229 FAP1 "fatty-acid-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/189 (37%), Positives = 113/189 (59%)

Query:    98 VEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKA 156
             VEPKTG SFP  + D ++L  VGLRKKS+LGL  I +Y FG+YAD + +K+L+  K    
Sbjct:    79 VEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANL 138

Query:   157 LA---KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKND 213
              A   +  K     ++++D  MT+R+ IV+  L +  V+  F E +G  +KK  GG  ND
Sbjct:   139 PASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKF-GGSDND 197

Query:   214 ELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGD 273
             EL         ++ K+   S I++++ PG+ L   +    V +V+S LLC++ + +Y+G+
Sbjct:   198 ELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGE 257

Query:   274 DAFDKDAKE 282
             + FDK+A+E
Sbjct:   258 EPFDKNARE 266

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2057751 FAP2 "fatty-acid-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 74/305 (24%), Positives = 140/305 (45%)

Query:     1 MATTAVENVTAKAEAL----VLQKATAIGEVAKENVGCENGTKVAEDQNAIAELAKEKMN 56
             ++ + +++   +AE L    +L  A A+  +   NV   NG  +    N +    K + N
Sbjct:   102 ISKSTIQHFVNEAERLHSCSLLSLAAAM--IPSLNVMSANGLALPLGSNDV----KLREN 155

Query:    57 CENRTKVAEAEELSDERVQEDKEKTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLNDGKQ- 115
              E+RT     E  + +   E  E +G   +K +        VEP+TG+ FP+ L +    
Sbjct:   156 IEHRTCPENTEHRTCQVGCE--EYSGLSFQKLDWTRQ---SVEPRTGIEFPMLLKENASR 210

Query:   116 -----LNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKALA-KATK--EMYQ 166
                  L   G R   ++ +  +K+Y FG Y     + + L  K     A K  K  ++Y+
Sbjct:   211 SNSEVLVATGSRTMKIIRIKSLKVYAFGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYK 270

Query:   167 TVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASED 226
              ++  D  M+VR+V+ ++ L ++ V+  F++ L A + K    K +    N       +D
Sbjct:   271 DLLREDIVMSVRLVVNYNGLKINTVRDVFEKSLRARLVK-ANPKTDFNCLNDFGSFFRQD 329

Query:   227 IKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGM 286
             I + +G++I+  R     L   +   ++  V S+ LC+A+  MY+GD    +  KE++G 
Sbjct:   330 IPIPAGTIIDFRRTEDGQLITEIGGNLIGAVRSKDLCRAFFGMYIGDVPVSEQTKEEIGR 389

Query:   287 SLLSL 291
              ++ +
Sbjct:   390 KVVGI 394


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.129   0.340    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      292       292   0.00090  115 3  11 23  0.46    34
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  556 (59 KB)
  Total size of DFA:  157 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  31.57u 0.16s 31.73t   Elapsed:  00:00:02
  Total cpu time:  31.57u 0.16s 31.73t   Elapsed:  00:00:02
  Start:  Fri May 10 13:20:15 2013   End:  Fri May 10 13:20:17 2013

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.5.1	LOW CONFIDENCE prediction!
4th Layer	5.5.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	292
PLN03174	278	PLN03174, PLN03174, Chalcone-flavanone isomerase-r	1e-54
pfam02431	200	pfam02431, Chalcone, Chalcone-flavanone isomerase	6e-29
PLN03175	415	PLN03175, PLN03175, hypothetical protein; Provisio	5e-16

>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related; Provisional

 Score =  178 bits (452), Expect = 1e-54
 Identities = 84/198 (42%), Positives = 130/198 (65%), Gaps = 5/198 (2%)

Query: 98  VEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKA 156
           VE KTGVSFP ++ D ++L  VGLRKKS+LGL  I +Y FG+YAD++ LK+LL  K GK 
Sbjct: 79  VESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKL 138

Query: 157 LA---KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKND 213
            A   K  KE    ++++D  MTVR+ IV+  L++  V+  F+E +G+ ++K  GG  N 
Sbjct: 139 SASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKF-GGSDNK 197

Query: 214 ELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGD 273
           EL         ++ K+  GSVI++SR PG+ L+  +  + V +++S+LLC++ + +Y+G+
Sbjct: 198 ELLQSFTSLFKDEYKIPKGSVIDLSREPGHVLRTTIDGKEVGSIQSKLLCRSILDLYIGE 257

Query: 274 DAFDKDAKEKLGMSLLSL 291
           D FDK+AKE +  +L SL
Sbjct: 258 DPFDKNAKEDIEENLASL 275

Length = 278

>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase

 Score =  109 bits (274), Expect = 6e-29
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 16/201 (7%)

Query: 106 FPVKLN-----DGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAKA 160
           FP  ++         L   G+R  S LG  IK+Y  G+Y     +  L     GK+  + 
Sbjct: 1   FPPTISPPGSPKSLFLLGAGVRGVSFLGKFIKVYAIGVYLAKSDVPSLASKWKGKSAEEL 60

Query: 161 TK--EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELA-N 217
            +  + ++ ++D      +RIV +  NL    ++  F E L A +KK    +  +E A  
Sbjct: 61  EESEDFFRDLLDGGIEKFIRIVPIR-NLDGKHLRDGFVESLVARLKKAGTYEDEEEEALE 119

Query: 218 KVMGHASEDIKLTSGSVIEISRLPGYTLQ------ARVMDQVVSNVESELLCKAYIHMYL 271
           K      +   +  GS I  +R P  +L        ++ +  +  VE++L+ +A +  YL
Sbjct: 120 KFREAFKDKGSVPKGSSILFTRSPDGSLTISFSKDGKIPETELGVVENKLVSRALLLSYL 179

Query: 272 -GDDAFDKDAKEKLGMSLLSL 291
            G      +AK+ +   L SL
Sbjct: 180 AGKKPVSPEAKKSVAEGLASL 200

Chalcone-flavanone isomerase is a plant enzyme responsible for the isomerisation of chalcone to naringenin, a key step in the biosynthesis of flavonoids. Length = 200

>gnl|CDD|178719 PLN03175, PLN03175, hypothetical protein; Provisional

 Score = 77.5 bits (191), Expect = 5e-16
 Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 13/205 (6%)

Query: 98  VEPKTGVSFPVKLN-DGKQLNC---VGLRKKSMLGLGIK---IYGFGIYADNEKLKELLR 150
           VEP+TG+ FP+ L+ +   L     VG   ++M  + IK   +Y FG Y     + E L 
Sbjct: 209 VEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLG 268

Query: 151 SK---IGKALAKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLT 207
            K   +  +  K   + Y+ ++  D  MTVR+V+ ++ L ++ V+  F++ L   ++K+ 
Sbjct: 269 PKYASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMN 328

Query: 208 GGKKNDELANKVMG-HASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAY 266
                D    K  G   +EDI + +G+ I+  R     L   +    +  V S+ LC+A+
Sbjct: 329 --PNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEIGGNQIGAVRSKDLCRAF 386

Query: 267 IHMYLGDDAFDKDAKEKLGMSLLSL 291
             MY+GD    +  KE++G ++  +
Sbjct: 387 FDMYIGDVPVSEQTKEEIGQNVAGI 411

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	292
PLN03174	278	Chalcone-flavanone isomerase-related; Provisional	100.0
PLN02311	271	chalcone isomerase	100.0
PLN03175	415	hypothetical protein; Provisional	100.0
PF02431	199	Chalcone: Chalcone-flavanone isomerase; InterPro:	100.0
PLN02804	206	chalcone isomerase	100.0
PLN02559	230	chalcone--flavonone isomerase	100.0

>PLN03174 Chalcone-flavanone isomerase-related; Provisional

Probab=100.00  E-value=2e-47  Score=356.02  Aligned_cols=203  Identities=41%  Similarity=0.724  Sum_probs=189.5

Q ss_pred             ccccCCCeeeccCCCcccCcccCCCCceeeeeeeeEEEeee-eeEEEEEEEeecchhHHHHHhhhhcccchh---chHHH
Q 043688           89 EAKEDIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEM  164 (292)
Q Consensus        89 ~a~~~~~~vvEp~TGV~FP~~l~~g~~LnGaGvR~K~I~~l-~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f  164 (292)
                      =|+++++.+|||+|||.||+.++....|.|+|+|.|+|.++ +||||++|||+++..++++|+.+|++++..   ++.+|
T Consensus        70 ~a~~~~~~~vEp~tGv~FP~~l~~~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f  149 (278)
T PLN03174         70 LADPSPPSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEF  149 (278)
T ss_pred             eccCCCCceeccCCCCcCCCcccCCCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHH
Confidence            46899999999999999999998766677999999999886 799999999999999999999999998864   57899


Q ss_pred             HHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCe
Q 043688          165 YQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYT  244 (292)
Q Consensus       165 ~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~  244 (292)
                      |++|+++|++|++||+++++.++.++++++|++++++||+++.+. +.++.|++|.++|+++.+++||++|+|+|.|+++
T Consensus       150 ~~dil~~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~-e~~e~IekF~~~F~~~~~l~kGdvI~~~~~Pg~g  228 (278)
T PLN03174        150 IDDLMEADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGS-DNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHV  228 (278)
T ss_pred             HHHHHcCCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCc-chHHHHHHHHHHHhccccCCCCCEEEEEEcCCCe
Confidence            999999999999999999988999999999999999999988754 3666899999999988889999999999999999


Q ss_pred             EEEEECCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          245 LQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       245 L~V~~nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      |++++||+..|+|+++.||+|||++|||++||||++|++++++|++||
T Consensus       229 l~vsi~Gk~~g~Ie~~~f~~ALf~iyLGd~PVsp~lK~sll~~la~ll  276 (278)
T PLN03174        229 LRTTIDGKEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLL  276 (278)
T ss_pred             EEEEECCEEeeEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999986

>PLN02311 chalcone isomerase

Probab=100.00  E-value=4e-45  Score=339.39  Aligned_cols=196  Identities=19%  Similarity=0.296  Sum_probs=176.1

Q ss_pred             ccCCCeeeccCCCcccCcccCC-C--C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chH
Q 043688           91 KEDIAVEVEPKTGVSFPVKLND-G--K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATK  162 (292)
Q Consensus        91 ~~~~~~vvEp~TGV~FP~~l~~-g--~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~  162 (292)
                      .++...++||+|||+||+.++. +  +  +|||+|+|.|+|.|++||||++|||++++.+++ |+ +|++.++.   ++.
T Consensus        62 ~~~~~~~~ep~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~~~vKVYA~GLYL~~~~~~~-L~-kwkgk~a~eL~~~~  139 (271)
T PLN02311         62 VGSAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAIIGVKVYAAGLYVNPSILSG-LS-AWKGRSADEIQRDS  139 (271)
T ss_pred             cCcccceecCCcCCcCCccccCCCCCCceeEeeeEEeeEEEeeeeEEEEEEEEEechhhhhh-Hh-hhcCCCHHHHhcch
Confidence            4778899999999999999983 3  2  999999999999999999999999999987755 66 89998763   678


Q ss_pred             HHHHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCC
Q 043688          163 EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPG  242 (292)
Q Consensus       163 ~f~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~  242 (292)
                      +||++|+++|.+|++||+++ |+++.++++++|++++++|++... . ++.++|++|.++|++ ..+++||+|+|+|.|+
T Consensus       140 ~ff~dIi~a~~eK~irI~~i-R~v~g~~~~~A~~eg~~~rlk~~~-~-~~~~aLekF~~~F~~-~~l~kGd~I~~~~~p~  215 (271)
T PLN02311        140 SLFSSIFQAPAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKAPS-P-DDTSALSTFRSIFQN-RSLNKGTVIFLTWINP  215 (271)
T ss_pred             HHHHHHhcCCcceEEEEEEE-ecCCHHHHHHHHHHHHHHHHhccc-c-chHHHHHHHHHHhcC-CCCCCCCEEEEEEeCC
Confidence            99999999999999999997 579999999999999999997543 2 367889999999986 5899999999999999


Q ss_pred             CeEEEEEC--C---EEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          243 YTLQARVM--D---QVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       243 g~L~V~~n--G---k~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      ++++|.++  |   +..|+|++++||+|||++||||+||||++|+++++||++||
T Consensus       216 ~~~~v~~s~~g~~~~~~g~Ies~~f~~ALf~i~LGd~PVs~~lK~sla~~la~ll  270 (271)
T PLN02311        216 SKMLVCISSEGLPSSVDATIESGNVTSALFDVFFGDSPVSPSLKASVANGLATTL  270 (271)
T ss_pred             CceEEEEecCCcccceeEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Confidence            88888874  4   56899999999999999999999999999999999999986

>PLN03175 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-44  Score=348.80  Aligned_cols=212  Identities=25%  Similarity=0.452  Sum_probs=190.7

Q ss_pred             hccCCccccccccCCCeeeccCCCcccCcccC-C-CC----ceeeeeeeeEEEee-eeeEEEEEEEeecchhHHHHHhhh
Q 043688           80 KTGNEVRKEEAKEDIAVEVEPKTGVSFPVKLN-D-GK----QLNCVGLRKKSMLG-LGIKIYGFGIYADNEKLKELLRSK  152 (292)
Q Consensus        80 ~~~~~~~~~~a~~~~~~vvEp~TGV~FP~~l~-~-g~----~LnGaGvR~K~I~~-l~vKVYA~GLYl~~~sl~~~L~~k  152 (292)
                      |.|+..-+-....-...+|||+|||+||..++ . ++    .|.|+|+|.+.|.+ ++|||||+|+|+++.+++.+|+.|
T Consensus       191 ~~~~~~~~~~~~~~~~~~vEPkTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~K  270 (415)
T PLN03175        191 HSGCSGLSFPDLNWTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPK  270 (415)
T ss_pred             CcCCCccCcCcccccccccccCCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhh
Confidence            44444444444456679999999999999996 2 32    79999999999985 589999999999998888999999


Q ss_pred             hcccchh---chHHHHHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcC
Q 043688          153 IGKALAK---ATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKL  229 (292)
Q Consensus       153 ~~~~~~~---~~~~f~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l  229 (292)
                      |+++++.   ++.+||++|+++|++|+|||++++++++.+++++||++++++||++..++. +.++|++|.++|+++.++
T Consensus       271 wkGKsa~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~gda-e~eAIeKF~s~F~~di~f  349 (415)
T PLN03175        271 YASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMNPNT-DYNCLKTFGSFFTEDIPI  349 (415)
T ss_pred             hCCCcHHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHhhccccc
Confidence            9999975   788999999999999999999998889999999999999999999887653 666799999999878889


Q ss_pred             CCCCEEEEEEeCCCeEEEEECCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          230 TSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       230 ~KGd~I~f~~~p~g~L~V~~nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      |||++|+|+|.|+++|+++++|+..|+|+|+.||+|||++||||+||||+||+++|++|++||
T Consensus       350 pkGssI~Ft~sP~ggLtisInG~~vgvIEnk~L~eALfdiyLGd~PVSPslKeslA~~La~Ll  412 (415)
T PLN03175        350 PAGTKIDFRRTSDGQLITEIGGNQIGAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGII  412 (415)
T ss_pred             CCCCEEEEEEcCCCceEEEECCeeeeEeccHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986

>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5

Probab=100.00  E-value=2.5e-40  Score=294.14  Aligned_cols=182  Identities=24%  Similarity=0.388  Sum_probs=152.7

Q ss_pred             cCcccC-C---C-CceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccc----hhchHHHHHHHhcCCCcce
Q 043688          106 FPVKLN-D---G-KQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKAL----AKATKEMYQTVIDSDAGMT  176 (292)
Q Consensus       106 FP~~l~-~---g-~~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~----~~~~~~f~~~Ll~~d~~~~  176 (292)
                      ||..++ +   . .+|+|+|+|+++|.  +||||++|||+++++++.++.. |.+..    ..++.+||++|++++++++
T Consensus         1 FP~~i~~p~~~~~l~L~G~GvR~~~~~--~ikVYavG~Yv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~k~   77 (199)
T PF02431_consen    1 FPKKITSPTSSEELSLLGAGVRTVSFL--NIKVYAVGLYVDDSDAKKLLKK-WKGKSASDDLEKSEDFFDDLLDSPVEKA   77 (199)
T ss_dssp             EESEEE-TTTSSEEEEEEEEEEEEEET--EEEEEEEEEEEECCHHHHHHHH-HTTT-HHHHHHT-HHHHHHHHHSSS-EE
T ss_pred             CCCcccCCCCCCCeEEEEEEEeeEEEE--EEEEEEEEEEEChhHhhhHHHh-hhcccCcccccccHHHHHHHhcCCccEE
Confidence            666665 1   1 29999999999985  7999999999999988886554 44443    2478899999999999999


Q ss_pred             EEEEEeeCccchhHHHHHHHHHHHhhhhhccC-CCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEEEC-----
Q 043688          177 VRIVIVFSNLTMSMVKKNFDEGLGASIKKLTG-GKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVM-----  250 (292)
Q Consensus       177 iRLviv~r~v~~~~l~daf~esl~~rl~~~~~-~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~n-----  250 (292)
                      +||+++| +++.+||+|+|.+++.+|++.... ..++++.|++|+++|+..++++||++|+|+|.|+++|.+.++     
T Consensus        78 iri~~~R-~~~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~~~~~~~~  156 (199)
T PF02431_consen   78 IRIVPVR-NVDGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVSYNGQGKI  156 (199)
T ss_dssp             EEEEESS-SEEHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEEEESSSS-
T ss_pred             EEEEEEe-cCCHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEEEecCCCC
Confidence            9999996 599999999999999999987652 234788999999999776689999999999999999999998     


Q ss_pred             -CEEeeEECCHhHHHHHHHHhc-CCCCCCHHHHHHHHHhhhhc
Q 043688          251 -DQVVSNVESELLCKAYIHMYL-GDDAFDKDAKEKLGMSLLSL  291 (292)
Q Consensus       251 -Gk~~G~I~s~~fa~ALfdiyL-Gd~PVSp~lK~s~aeglasl  291 (292)
                       |+..|+|+++.||+|||++|| |++||||++|+++++||++|
T Consensus       157 ~~~~~g~I~~~~~~~al~~~yL~G~~pvs~~~k~s~~~~l~~l  199 (199)
T PF02431_consen  157 PGKELGTIKSPRFARALFDIYLSGDKPVSPSLKKSVAEGLASL  199 (199)
T ss_dssp             -SSECEEEE-HHHHHHHHHHHH-STT-S-HHHHHHHHHHHHHH
T ss_pred             CccceeEEcCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcC
Confidence             899999999999999999999 99999999999999999986

5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....

>PLN02804 chalcone isomerase

Probab=100.00  E-value=1.4e-38  Score=285.13  Aligned_cols=187  Identities=16%  Similarity=0.232  Sum_probs=167.2

Q ss_pred             CCcccCcccCCC-C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCCCcc
Q 043688          102 TGVSFPVKLNDG-K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSDAGM  175 (292)
Q Consensus       102 TGV~FP~~l~~g-~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d~~~  175 (292)
                      .|++||..++.. +  .|.|+|+|.+.|.|++|||||+|+|+++ +++.+| .+|+++++.   ++.+||++|+++|++|
T Consensus         7 ~~v~FP~~i~~ss~~l~L~G~G~R~~~I~~~~iK~yAiGvYle~-~~~~~L-~kwkgk~a~EL~~~~~Ff~dlv~~p~ek   84 (206)
T PLN02804          7 EDIPFPPQITTSSKPLSLLGHGITDIEIHFLQIKFTAIGVYLEP-SVKGHL-QSWKGKPGSELAEDDDFFQALIQAPVEK   84 (206)
T ss_pred             cCcCCCceeecCCCcceEEeecccceEEEeEEEEEEEEEEEecH-HHHHHH-HHhcCCCHHHHhcCHHHHHHHHcCChhh
Confidence            489999999843 3  9999999999999999999999999999 577778 589998863   6889999999999999


Q ss_pred             eEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeC-CCeEEEEE--CC
Q 043688          176 TVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLP-GYTLQARV--MD  251 (292)
Q Consensus       176 ~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p-~g~L~V~~--nG  251 (292)
                      .+||++++ +++..+++++|++++++|++..+..+ ++.++|++|.++|++. ++|||++|+|+|+| +|.|.|.+  +|
T Consensus        85 ~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~-~fp~Gs~I~ft~~~~~g~l~Isfs~dg  162 (206)
T PLN02804         85 LIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSK-YFKKNSIITYHFPATSGIVEISFSTEG  162 (206)
T ss_pred             EEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCC-cCCCCCEEEEEecCCCCeEEEEEecCC
Confidence            99999996 68888999999999999999988654 3688999999999765 89999999999998 78887766  56


Q ss_pred             EEe--eEECCHhHHHHHHHHhc-CCCCCCHHHHHHHHHhhhhcC
Q 043688          252 QVV--SNVESELLCKAYIHMYL-GDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       252 k~~--G~I~s~~fa~ALfdiyL-Gd~PVSp~lK~s~aeglasl~  292 (292)
                      ...  ++|+|+.+|+|||++|| |++||||++|+++|++|+.++
T Consensus       163 ~e~~~~~Ienk~l~~avl~~yi~G~~~VSp~~k~slA~~la~~~  206 (206)
T PLN02804        163 KEESKLTVENANVVEMIQKWYLGGENGVSPSTISSVADSIAAEL  206 (206)
T ss_pred             cccceeEEecHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC
Confidence            554  56999999999999999 999999999999999999885

>PLN02559 chalcone--flavonone isomerase

Probab=100.00  E-value=1.1e-36  Score=275.05  Aligned_cols=188  Identities=23%  Similarity=0.312  Sum_probs=169.6

Q ss_pred             CCcccCcccC-CCC----ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCCC
Q 043688          102 TGVSFPVKLN-DGK----QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSDA  173 (292)
Q Consensus       102 TGV~FP~~l~-~g~----~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d~  173 (292)
                      .||+||..++ +|.    .|.|+|+|.+.|.+++||+||+|+||++.++ ..|+.+|++++..   ++.+||++|+.+|+
T Consensus        10 e~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~~vKftAiGvYle~~av-~~L~~KWKGKsa~EL~~~~~Ff~div~~p~   88 (230)
T PLN02559         10 EGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGKFIKFTAIGVYLEGNAV-PSLAKKWKGKTAEELADSVAFFRDVVTGDF   88 (230)
T ss_pred             cceecCCcccCCCCCCceEEEeccccceEEeeEEEEEEEEEEEechhHH-HHHHHhhCCcCHHHHhcCHHHHHHHHcCcc
Confidence            4899999997 332    9999999999999999999999999999877 4588999999863   78899999999999


Q ss_pred             cceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEEE--C
Q 043688          174 GMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARV--M  250 (292)
Q Consensus       174 ~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~--n  250 (292)
                      ++.+|++++. +++..++.+.+.+...+|++..+... .+.++|++|.++|++. .||||+.|+|+|+|++.|.|++  +
T Consensus        89 EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~-~fp~Gs~I~ft~sp~g~L~isfs~d  166 (230)
T PLN02559         89 EKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEE-TFPPGSSILFTHSPTGSLTVAFSKD  166 (230)
T ss_pred             hhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCC-CCCCCCEEEEEECCCCcEEEEEecC
Confidence            9999999996 69999999999999999999877543 3578999999999974 8999999999999999999887  3


Q ss_pred             ----CEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          251 ----DQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       251 ----Gk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                          +...++|+|+.+|+|+|++|||++||||++|+++|++|+.||
T Consensus       167 g~ipe~~~~~Ienk~l~eAv~e~~IG~~~VSP~aK~slA~~la~ll  212 (230)
T PLN02559        167 SSVPEVGNAVIENKLLCEAVLESIIGKHGVSPAAKLSLAARLSELL  212 (230)
T ss_pred             CCCCccceEEEechHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence                456688999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	292
4doo_A	205	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		2e-32

>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At3g63170 (Atfap1) Length = 205

Iteration: 1
 Score =  135 bits (341), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 5/191 (2%)
Query: 98  VEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKA 156
           VEPKTG SFP  + D ++L  VGLRKKS+LGL  I +Y FG+YAD + +K+L+  K    
Sbjct: 6   VEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANL 65
Query: 157 LA---KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKND 213
            A   +  K     ++++D  MT+R+ IV+  L +  V+  F E +G  +KK  GG  ND
Sbjct: 66  PASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKF-GGSDND 124
Query: 214 ELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGD 273
           EL         ++ K+   S I++++ PG+ L   +    V +V+S LLC++ + +Y+G+
Sbjct: 125 ELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGE 184
Query: 274 DAFDKDAKEKL 284
           + FDK+A+E  
Sbjct: 185 EPFDKNAREDF 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	292
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	1e-41
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	3e-32
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	2e-29
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	7e-23
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	3e-19

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana} Length = 205

 Score =  142 bits (358), Expect = 1e-41
 Identities = 73/198 (36%), Positives = 115/198 (58%), Gaps = 5/198 (2%)

Query: 98  VEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKA 156
           VEPKTG SFP  + D ++L  VGLRKKS+LGL  I +Y FG+YAD + +K+L+  K    
Sbjct: 6   VEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANL 65

Query: 157 LAKA---TKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKND 213
            A      K     ++++D  MT+R+ IV+  L +  V+  F E +G  +KK  GG  ND
Sbjct: 66  PASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKK-FGGSDND 124

Query: 214 ELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSNVESELLCKAYIHMYLGD 273
           EL         ++ K+   S I++++ PG+ L   +    V +V+S LLC++ + +Y+G+
Sbjct: 125 ELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIGE 184

Query: 274 DAFDKDAKEKLGMSLLSL 291
           + FDK+A+E    +  SL
Sbjct: 185 EPFDKNAREDFLDNAASL 202

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A* Length = 222

 Score =  117 bits (295), Expect = 3e-32
 Identities = 34/211 (16%), Positives = 72/211 (34%), Gaps = 14/211 (6%)

Query: 95  AVEVEPKTGVSFPVKLN-----DGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELL 149
           ++       + +P  +          L   G R  ++ G  IK    G+Y ++  +  L 
Sbjct: 4   SITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 63

Query: 150 RSKIGKALA--KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLT 207
               GK+      T + Y+ +I       +R   +   L+     +   E   A +K + 
Sbjct: 64  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKI-RELSGPEYSRKVMENCVAHLKSVG 122

Query: 208 GGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMD------QVVSNVESEL 261
                +  A +    A + +    G+ +   + P   L            +  + +E++ 
Sbjct: 123 TYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKA 182

Query: 262 LCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292
           +  A +   +G+ A   D K  L   L +L 
Sbjct: 183 VSSAVLETMIGEHAVSPDLKRCLAARLPALL 213

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana} Length = 217

 Score =  110 bits (276), Expect = 2e-29
 Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 15/208 (7%)

Query: 95  AVEVEPKTGVSFPVKL-----NDGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELL 149
               E  T V F   +     +    L   G R+K    +G+K+Y  G Y +   L  L 
Sbjct: 12  DYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSGLS 71

Query: 150 RSKIGKAL-AKATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTG 208
                 A   +    ++ ++  + A  +++IV+V  ++         DE +   IK    
Sbjct: 72  AWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKSP-- 128

Query: 209 GKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVMDQVVSN-----VESELLC 263
               D  A        ++  L  GSVI ++ +    +   V    +       +ES  + 
Sbjct: 129 -SSEDTTALSTFCCIFQNRPLNKGSVILLTWINTSNMLVSVSSGGLPTNVDATIESGNVT 187

Query: 264 KAYIHMYLGDDAFDKDAKEKLGMSLLSL 291
            A   ++ GD       K  +   L   
Sbjct: 188 SALFDVFFGDSPVSPTLKSSVANQLAMT 215

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana} Length = 208

 Score = 92.8 bits (230), Expect = 7e-23
 Identities = 29/208 (13%), Positives = 70/208 (33%), Gaps = 14/208 (6%)

Query: 95  AVEVEPKTGVSFPVKLNDGKQLNCV--GLRKKSMLGLGIKIYGFGIYADNEKLKELLRSK 152
            V V     V FP ++   K L+ +  G+    +  L +K    G+Y D   +K  L + 
Sbjct: 4   MVMVH---EVPFPPQIITSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNW 60

Query: 153 IGKALA--KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK 210
            GK         + +  +  ++    +R+V++   +  +      +  +   + +    +
Sbjct: 61  KGKTGKELAGDDDFFDALASAEMEKVIRVVVI-KEIKGAQYGVQLENTVRDRLAEEDKYE 119

Query: 211 KNDELANKVMGHASEDIKLTSGSVIEISRLPG-----YTLQARVMDQVVSNVESELLCKA 265
           + +E   + +    +     + SVI               +    ++    VE+  +   
Sbjct: 120 EEEETELEKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGM 179

Query: 266 YIHMYL-GDDAFDKDAKEKLGMSLLSLF 292
               YL G           +  S+ ++ 
Sbjct: 180 MQRWYLSGSRGVSPSTIVSIADSISAVL 207

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana} Length = 246

 Score = 84.1 bits (207), Expect = 3e-19
 Identities = 30/203 (14%), Positives = 68/203 (33%), Gaps = 14/203 (6%)

Query: 103 GVSFPVKLN-----DGKQLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKAL 157
            V+F   +      +   L   G+R   + G  +     G+Y +   +  L     GK  
Sbjct: 23  SVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGNAVPSLSVKWKGKTT 82

Query: 158 A--KATKEMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDEL 215
                +   ++ ++       +++ +    LT     +   E   A  K+L      +  
Sbjct: 83  EELTESIPFFREIVTGAFEKFIKVTMK-LPLTGQQYSEKVTENCVAIWKQLGLYTDCEAK 141

Query: 216 ANKVMGHASEDIKLTSGSVIEISRLPGYTLQARVM------DQVVSNVESELLCKAYIHM 269
           A +      ++     GS I  +  P  +L           +  ++ +E++LL +A +  
Sbjct: 142 AVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLES 201

Query: 270 YLGDDAFDKDAKEKLGMSLLSLF 292
            +G +      +  +   L  L 
Sbjct: 202 IIGKNGVSPGTRLSVAERLSQLM 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	292
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	100.0
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	100.0
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	100.0
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	100.0
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	100.0

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-49  Score=353.22  Aligned_cols=198  Identities=36%  Similarity=0.665  Sum_probs=184.1

Q ss_pred             CCCeeeccCCCcccCcccCCCCceeeeeeeeEEEeee-eeEEEEEEEeecchhHHHHHhhhhcccch---hchHHHHHHH
Q 043688           93 DIAVEVEPKTGVSFPVKLNDGKQLNCVGLRKKSMLGL-GIKIYGFGIYADNEKLKELLRSKIGKALA---KATKEMYQTV  168 (292)
Q Consensus        93 ~~~~vvEp~TGV~FP~~l~~g~~LnGaGvR~K~I~~l-~vKVYA~GLYl~~~sl~~~L~~k~~~~~~---~~~~~f~~~L  168 (292)
                      +++++|||+|||+||+.++.+.+|+|+|+|+++|.++ +||||++|||+++++++++|+.||++.++   .++.+||++|
T Consensus         1 ~~~~~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~i   80 (205)
T 4doo_A            1 ADESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDL   80 (205)
T ss_dssp             --CCEECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHH
T ss_pred             CCCccccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHH
Confidence            3678999999999999999878999999999999876 89999999999999999899999999774   3677899999


Q ss_pred             hcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEE
Q 043688          169 IDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQAR  248 (292)
Q Consensus       169 l~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~  248 (292)
                      +++++++++||++++++++++|++++|++++++|+++.+.. .+++.|++|.++|++..+++||++|+|+|.|++++.++
T Consensus        81 l~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~-~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l~~~  159 (205)
T 4doo_A           81 MEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGS-DNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVA  159 (205)
T ss_dssp             HHSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCS-CCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEEEEE
T ss_pred             HcCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcEEEE
Confidence            99999999999999878999999999999999999887644 37899999999998777899999999999999999999


Q ss_pred             ECCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhc
Q 043688          249 VMDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSL  291 (292)
Q Consensus       249 ~nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl  291 (292)
                      +||+..|+|+++.|++|||++|||++|+||++|+++++||++|
T Consensus       160 ~~g~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l  202 (205)
T 4doo_A          160 IEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASL  202 (205)
T ss_dssp             ETTEEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHH
T ss_pred             ECCeeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-44  Score=323.91  Aligned_cols=195  Identities=20%  Similarity=0.300  Sum_probs=174.4

Q ss_pred             cCC-CeeeccCCCcccCcccCC-C--C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chH
Q 043688           92 EDI-AVEVEPKTGVSFPVKLND-G--K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATK  162 (292)
Q Consensus        92 ~~~-~~vvEp~TGV~FP~~l~~-g--~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~  162 (292)
                      +++ .++|||+|||+||++++. +  +  +|+|+|+|+|+|.|++||||++|||++++.+++ |+ +|++.++.   ++.
T Consensus         8 ~~~~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~glYl~~~~~~~-L~-~~~~~~~~el~~~~   85 (217)
T 4dol_A            8 GNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAIIGVKVYAAGYYVNESILSG-LS-AWTGRSADEIQRDS   85 (217)
T ss_dssp             ---CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSSEEEEEEEEEEECGGGTGG-GG-GGTTCCHHHHHTCH
T ss_pred             CCccceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeeeEEEEEEEEEEcCHHHHHH-HH-hhcCCCHHHHcccH
Confidence            554 499999999999999983 3  2  999999999999999999999999999987654 66 88887753   678


Q ss_pred             HHHHHHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCccHHHHHHHHhhcccCCcCCCCCEEEEEEeCC
Q 043688          163 EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKKNDELANKVMGHASEDIKLTSGSVIEISRLPG  242 (292)
Q Consensus       163 ~f~~~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~  242 (292)
                      +||++|+++|+++++||++++ +++.++++++|.+++++|+++.+.  .+++.|++|.++|++ .+++|||+|+|+|.|+
T Consensus        86 ~~~~~il~~~~~k~lri~~~R-~i~~~~l~~a~~e~i~~~~~~~~~--~~~~~l~~f~~~F~d-~~v~kGd~i~~~~~p~  161 (217)
T 4dol_A           86 SLFVSIFQAQAEKSLQIVLVR-DVDGKTFWDALDEAISPRIKSPSS--EDTTALSTFCCIFQN-RPLNKGSVILLTWINT  161 (217)
T ss_dssp             HHHHHHHHSSSCEEEEEEESS-CBCHHHHHHHHHHHHTTTCSSCCH--HHHHHHHHHHHHHTT-CCBCTTCEEEEEEEET
T ss_pred             HHHHHHHcCCCceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhCC-CcCCCCCEEEEEEcCC
Confidence            999999999999999999995 599999999999999999876542  368899999999996 4899999999999999


Q ss_pred             CeEEEEEC--C---EEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          243 YTLQARVM--D---QVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       243 g~L~V~~n--G---k~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      +++.++++  |   +..|+|+++.|++|||+||||++|+||+||+++++||++||
T Consensus       162 ~~l~i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~  216 (217)
T 4dol_A          162 SNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL  216 (217)
T ss_dssp             TEEEEEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence            99999996  5   56899999999999999999999999999999999999986

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=2e-43  Score=316.56  Aligned_cols=188  Identities=15%  Similarity=0.219  Sum_probs=170.1

Q ss_pred             CCcccCcccCCCC--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCCCcce
Q 043688          102 TGVSFPVKLNDGK--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSDAGMT  176 (292)
Q Consensus       102 TGV~FP~~l~~g~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d~~~~  176 (292)
                      .||+||+.++.++  +|+|+|+|.|.|.|+.|||||+|||+++++++.+| .+|++.++.   ++.+||++|+++|+++.
T Consensus         8 ~gv~FP~~~~~~~~L~L~GaGvR~~~I~~~~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~ii~~p~eK~   86 (208)
T 4dok_A            8 HEVPFPPQIITSKPLSLLGQGITDIEIHFLQVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDALASAEMEKV   86 (208)
T ss_dssp             TTEEECSEEESSSEEEEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHHHHHSSSCEE
T ss_pred             ccEECCccccCCCcceeeeeeeeeEeeeeeEEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHHHhcCcccce
Confidence            4999999998554  89999999999999999999999999998888888 899998863   78899999999999999


Q ss_pred             EEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCC-CeEEEE--ECCE
Q 043688          177 VRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPG-YTLQAR--VMDQ  252 (292)
Q Consensus       177 iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~-g~L~V~--~nGk  252 (292)
                      +||++++ +++.++++++|++++++|+++.+..+ ++.++|++|.++|++ ..+|||++|+|+|.|+ |.|.|.  .||+
T Consensus        87 iri~~ir-~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~-~~~~~G~~I~~~~~p~~G~L~i~~s~~G~  164 (208)
T 4dok_A           87 IRVVVIK-EIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQS-KYFKANSVITYHFSAKDGICEIGFETEGK  164 (208)
T ss_dssp             EEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHT-CEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred             EEEEEEe-cCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhcc-CCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence            9999995 69999999999999999999877543 367899999999986 4799999999999998 676655  5898


Q ss_pred             Eee--EECCHhHHHHHHHHhc-CCCCCCHHHHHHHHHhhhhcC
Q 043688          253 VVS--NVESELLCKAYIHMYL-GDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       253 ~~G--~I~s~~fa~ALfdiyL-Gd~PVSp~lK~s~aeglasl~  292 (292)
                      +.|  +|+|+.||+|||++|| |++||||++|+++++||++||
T Consensus       165 ~~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll  207 (208)
T 4dok_A          165 EEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL  207 (208)
T ss_dssp             CCEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHH
T ss_pred             eccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhh
Confidence            665  7999999999999999 999999999999999999985

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-43  Score=321.28  Aligned_cols=189  Identities=16%  Similarity=0.214  Sum_probs=171.1

Q ss_pred             CCCcccCcccCC---CC--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCC
Q 043688          101 KTGVSFPVKLND---GK--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSD  172 (292)
Q Consensus       101 ~TGV~FP~~l~~---g~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d  172 (292)
                      -+||+||+.++.   ++  +|+|+|+|.|.|.|+.|||||+|||++++ +..+|+.+|++.++.   ++.+||++|+++|
T Consensus        21 V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~~vKvYAiGlYl~~~-~~~~L~~kwkgk~~~eL~~~~~ff~~il~~p   99 (246)
T 4doi_A           21 VDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGKFVIFTVIGVYLEGN-AVPSLSVKWKGKTTEELTESIPFFREIVTGA   99 (246)
T ss_dssp             ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEECTT-HHHHHHHHHTTCCHHHHHHCHHHHHHHHHCS
T ss_pred             ECceECCCeeccCCCCCceeEecceeeceeeeeeEEEEEEEEEEechh-HHHHhhhhhcCCCHHHhcccHHHHHHHHcCC
Confidence            479999999973   33  99999999999999999999999999997 556799999999863   7889999999999


Q ss_pred             CcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEEE--
Q 043688          173 AGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQARV--  249 (292)
Q Consensus       173 ~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~~--  249 (292)
                      ++|.+||++++ +++.++++++|++++++|++..+... .+.++|++|.++|++. .++||++|+|+|.|+++|.|++  
T Consensus       100 ~eK~lrl~~ir-~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~-~l~kGs~I~~~~~p~g~l~i~~s~  177 (246)
T 4doi_A          100 FEKFIKVTMKL-PLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEE-TFPPGSSILFALSPTGSLTVAFSK  177 (246)
T ss_dssp             SCEEEEEEESS-CEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEECTTSEEEEEEES
T ss_pred             cceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccC-cCCCCCEEEEEEeCCCcEEEEEec
Confidence            99999999995 69999999999999999998766543 3678999999999864 7999999999999999999988  


Q ss_pred             CCE----EeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          250 MDQ----VVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       250 nGk----~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      ||+    ..++|+|+.||+|||++|||++||||++|++++++|++||
T Consensus       178 ~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll  224 (246)
T 4doi_A          178 DDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLM  224 (246)
T ss_dssp             SSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHH
T ss_pred             CCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            887    4678999999999999999999999999999999999985

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*

Probab=100.00  E-value=1.8e-42  Score=312.92  Aligned_cols=189  Identities=19%  Similarity=0.220  Sum_probs=168.5

Q ss_pred             CCCcccCcccCC---CC--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccchh---chHHHHHHHhcCC
Q 043688          101 KTGVSFPVKLND---GK--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALAK---ATKEMYQTVIDSD  172 (292)
Q Consensus       101 ~TGV~FP~~l~~---g~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~~---~~~~f~~~Ll~~d  172 (292)
                      -|||+||++++.   ++  +|+|+|+|.|+|.|++||||++|||++++.. .+|+.+|++.++.   ++.+||++|+++|
T Consensus        10 v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~~iKvYa~GlYl~~~~~-~~L~~k~kg~~a~el~~~~~f~~~li~~~   88 (222)
T 1eyq_A           10 VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAV-ASLAAKWKGKSSEELLETLDFYRDIISGP   88 (222)
T ss_dssp             ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHH-HHHHHHHTTCCHHHHHTCHHHHHHHHHCS
T ss_pred             EcceECCCccccCCCCCceEEeeeEEEEEEeeceEEEEEEEEEEeCHHHh-hHhhhhhcCCCHHHhcccHHHHHHHHcCC
Confidence            589999999873   23  9999999999999999999999999999754 5688999998753   7889999999999


Q ss_pred             CcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCC-ccHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeEEEE--E
Q 043688          173 AGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGK-KNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQAR--V  249 (292)
Q Consensus       173 ~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~-d~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L~V~--~  249 (292)
                      +++++||++++ +++.++++++|++++++|++..+... .+.++|++|.++|++. .++||++|+|+|.|+++|.|+  .
T Consensus        89 ~~k~irl~~i~-~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~-~~~kG~~i~~~~~p~g~l~is~~~  166 (222)
T 1eyq_A           89 FEKLIRGSKIR-ELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPV-NFPPGASVFYRQSPDGILGLSFSP  166 (222)
T ss_dssp             SCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEEETTTEEEEEEES
T ss_pred             CceEEEEEEEe-CCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCC-CCCCCCEEEEEEcCCCceEEEEEe
Confidence            99999999995 69999999999999999998765432 3567999999999754 599999999999999988775  4


Q ss_pred             CCE----EeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          250 MDQ----VVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       250 nGk----~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      ||+    ..|+|+|+.||+|||++|||++||||+||++++++|++||
T Consensus       167 ~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll  213 (222)
T 1eyq_A          167 DTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALL  213 (222)
T ss_dssp             SSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHh
Confidence            888    7899999999999999999999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	292
d1eyqa_	212	d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicag	1e-33

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  120 bits (301), Expect = 1e-33
 Identities = 36/211 (17%), Positives = 77/211 (36%), Gaps = 17/211 (8%)

Query: 95  AVEVEPKTGVSFPVKLNDGK-----QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELL 149
           A+ VE    + +P  +          L   G R  ++ G  IK    G+Y ++  +  L 
Sbjct: 4   AITVE---NLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLA 60

Query: 150 RSKIGKALAKATK--EMYQTVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLT 207
               GK+  +  +  + Y+ +I       +R   +   L+     +   E   A +K + 
Sbjct: 61  AKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKI-RELSGPEYSRKVMENCVAHLKSVG 119

Query: 208 GGKKNDELANKVMGHASEDIKLTSGSVIEISRLPGYTLQA------RVMDQVVSNVESEL 261
                +  A +    A + +    G+ +   + P   L         + ++  + +E++ 
Sbjct: 120 TYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKA 179

Query: 262 LCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF 292
           +  A +   +G+ A   D K  L   L +L 
Sbjct: 180 VSSAVLETMIGEHAVSPDLKRCLAARLPALL 210

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	292
d1eyqa_	212	Chalcone isomerase {Alfalfa (Medicago sativa) [Tax	100.0

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.4e-43  Score=315.24  Aligned_cols=192  Identities=19%  Similarity=0.245  Sum_probs=171.5

Q ss_pred             CeeeccCCCcccCcccCC-C--C--ceeeeeeeeEEEeeeeeEEEEEEEeecchhHHHHHhhhhcccch---hchHHHHH
Q 043688           95 AVEVEPKTGVSFPVKLND-G--K--QLNCVGLRKKSMLGLGIKIYGFGIYADNEKLKELLRSKIGKALA---KATKEMYQ  166 (292)
Q Consensus        95 ~~vvEp~TGV~FP~~l~~-g--~--~LnGaGvR~K~I~~l~vKVYA~GLYl~~~sl~~~L~~k~~~~~~---~~~~~f~~  166 (292)
                      ++.||   ||+||+.++. +  +  +|+|+|+|.|+|.|++||||++|||+++.+++. |..+|.+.+.   .++.+||+
T Consensus         4 ~v~v~---~v~fP~~i~~~~~~~~l~L~G~GvR~~~i~~~~ikvYa~GlYl~~~~~~~-l~~~~~~k~~~el~~~~~~~~   79 (212)
T d1eyqa_           4 AITVE---NLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVAS-LAAKWKGKSSEELLETLDFYR   79 (212)
T ss_dssp             CEEET---TEEECSEEECTTTCCEEEEEEEEEEEEEETTEEEEEEEEEEEEETTHHHH-HHHHHTTCCHHHHHTCHHHHH
T ss_pred             eEEEC---CccCCCcccCCCCCCceEEeeeEEeeEEEeeeEEEEEEEEEEcccchhHH-HhhhhcccchhhhhccHHHHH
Confidence            34455   8999999973 3  2  899999999999999999999999999998775 6788888775   36789999


Q ss_pred             HHhcCCCcceEEEEEeeCccchhHHHHHHHHHHHhhhhhccCCCc-cHHHHHHHHhhcccCCcCCCCCEEEEEEeCCCeE
Q 043688          167 TVIDSDAGMTVRIVIVFSNLTMSMVKKNFDEGLGASIKKLTGGKK-NDELANKVMGHASEDIKLTSGSVIEISRLPGYTL  245 (292)
Q Consensus       167 ~Ll~~d~~~~iRLviv~r~v~~~~l~daf~esl~~rl~~~~~~~d-~~e~l~~f~~~F~~~~~l~KGd~I~f~~~p~g~L  245 (292)
                      +|+++++++++||+++| +++.+|++++|++++++|++..+...+ +.+.|++|.++|++ .+++||+.|+|+|.|+++|
T Consensus        80 ~il~~~~~k~iriv~vr-~v~~~~l~dal~e~l~~r~~~~~~~~~~~~~~l~~f~~~F~~-~~~~kG~~i~~~~~p~g~l  157 (212)
T d1eyqa_          80 DIISGPFEKLIRGSKIR-ELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKP-VNFPPGASVFYRQSPDGIL  157 (212)
T ss_dssp             HHHHCSSCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CEECTTCEEEEEEETTTEE
T ss_pred             HHhcCCcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhcC-CccCCCCEEEEEECCCCcE
Confidence            99999999999999996 699999999999999999998776542 46789999999986 4799999999999999999


Q ss_pred             EEEE------CCEEeeEECCHhHHHHHHHHhcCCCCCCHHHHHHHHHhhhhcC
Q 043688          246 QARV------MDQVVSNVESELLCKAYIHMYLGDDAFDKDAKEKLGMSLLSLF  292 (292)
Q Consensus       246 ~V~~------nGk~~G~I~s~~fa~ALfdiyLGd~PVSp~lK~s~aeglasl~  292 (292)
                      .|++      +|+..|+|++++||+|||++||||+||||++|+++++||++||
T Consensus       158 ~vs~~~~~~~~~~~~g~I~~~~~~~al~~~yLGd~Pvs~~lK~s~~~~l~~l~  210 (212)
T d1eyqa_         158 GLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALL  210 (212)
T ss_dssp             EEEEESSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCceeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence            9986      5678999999999999999999999999999999999999985