Citrus Sinensis ID: 043705

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----

MQAVLLHKISPPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNNTW

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEcccccccccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEccccEEEccccccEEEEEccccccccccccccccHHHHHHccccccccccccccccEEEccccccccccEEEEEEcccccccccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccEEEEEEccEEEcHHHHHHHHcccccccccccccccccccEEEEEEccccccccEEEEEEccccccccEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccEEEEEEcccccEEEEEccccccccccEEEccccccccEEEEEEEEEcccccEEEEEEEcccccccccEEEEEEcccEEccccccccccccccc

cccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccEEcccccHccccEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEcHHHHHHHHccccEEccccccccccccccccccccccccccEEEEEEEEcccEEEEEcccccEEEccccccccccEcccccEEcccccccccccHHHHHccccccccccccccEEEEcccccccccEEEEEEcccccccccccEEEEEEEcccccEcccccEccccccEEEEcEEcccEEEEEcccEEEcHHHHHHHHccccccHHHHEEcccccccEEEEEEcccccccccEEEEcccccccccEEEEEEEEEEccccccEEEEEEEEccccccccEEEHcccccccccccccccccHccccccccccEEEEEEcccccccccccccccccccccccccccEcccccccccEEEEEEEEcccccccccccccEEEEEEEcccEEEEEEEcccccccccEEEcccccccccEEEEEEEEccccccEEEEEEcccccccccEEEEEEEcccEcccccccccEccccc

mqavllhkispprflspltalrplqkvstpqakipravsltkpdnnqvsistpttvqaeiddstAAFWDYQFLFVSqrsettapitlhlvdgaipsdfpsgtyyltgpglftddhgstvhpldghgylrafefdgvtGEVKYMAKYVKTdaqveehdpqtdtwrfthrgpfsvlkggkkfgntkVMKNVANTSVLKWGGKLLClweggdpyeiesgtldtigqlqmmdggdslgknsKDLWDVAAEMLKPILygvfkmppkrllshykldaprnrlltvscnaedmllprsnftfyefdsnfkllNKQEFNildhlmihdwaftDTHYILFANRVKLDVLGSMtavsglspmisalsvnpskptspvyllprfpnksvgvrdwrvpveapsqmWLLHVgnafelkdvdgnteiQIHACSCSYEWfnfqnlfgynwqsgrldpsimnlkeseyQLLPHLVQVSISldvdgncqkctveplnqwkkssdfpiinptysgqktTCIYAATslgtrralphfpfdtVVKLNVLTKSVQtwsvgtrrfigepifvpkgveeddgYLLVIEYAVSIQRCYLIilnpkkigegDALVARlevprhlnfplgfhgfwdnntw

mqavllhkispprflspltalrplqkvstpqakipravsltkpdnnqvsistpttvQAEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTdaqveehdpqtdtwrfthrgpfsvlkggkkfgntkvmknvantsvlkwGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTveplnqwkkssdfpiinpTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKsvqtwsvgtrrfigepifvpkgveedDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHlnfplgfhgfwdnntw

*********************************************************AEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMD******KNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISAL*********PVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWD****

****************************************************************AAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNNTW

MQAVLLHKISPPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDA********TDTWRFTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNNTW

********ISPPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN**

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		614	2.2.26 [Sep-21-2011]
Q7XJM2		618	Carotenoid cleavage dioxy	yes	no	0.960	0.954	0.620	0.0
P74334		490	Apocarotenoid-15,15'-oxyg	N/A	no	0.714	0.895	0.278	2e-35
Q9LRM7		577	9-cis-epoxycarotenoid dio	no	no	0.693	0.738	0.228	2e-14
Q6PBW5		531	Retinoid isomerohydrolase	yes	no	0.728	0.841	0.235	5e-13
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	0.719	0.817	0.219	1e-11
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.692	0.721	0.230	7e-11
Q9M6E8		615	9-cis-epoxycarotenoid dio	N/A	no	0.701	0.700	0.214	7e-11
O65572		538	Carotenoid 9,10(9',10')-c	no	no	0.741	0.845	0.212	5e-09
A9C3R9		532	All-trans-retinyl ester 1	no	no	0.749	0.864	0.225	1e-08
O49505		583	9-cis-epoxycarotenoid dio	no	no	0.697	0.734	0.214	2e-08

>sp\|Q7XJM2\|CCD7_ARATH Carotenoid cleavage dioxygenase 7, chloroplastic OS=Arabidopsis thaliana GN=CCD7 PE=1 SV=1	Back alignment and function desciption

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/619 (62%), Positives = 472/619 (76%), Gaps = 29/619 (4%)

Query: 11  PPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAE----IDDSTA- 65
           PP+FL PL          +P     +      P    +SIS P T        +D+ST+ 
Sbjct: 6   PPKFLPPL---------KSPPIHHHQTPPPLAPPRAAISISIPDTGLGRTGTILDESTSS 56

Query: 66  AFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGH 125
           AF DYQ LFVSQRSET  P+ +  ++G+IP +FPSGTYYL GPGLFTDDHGSTVHPLDGH
Sbjct: 57  AFRDYQSLFVSQRSETIEPVVIKPIEGSIPVNFPSGTYYLAGPGLFTDDHGSTVHPLDGH 116

Query: 126 GYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKV 185
           GYLRAF  DG   +  + AKYVKT+A+ EEHDP TDTWRFTHRGPFSVLKGGK+FGNTKV
Sbjct: 117 GYLRAFHIDGNKRKATFTAKYVKTEAKKEEHDPVTDTWRFTHRGPFSVLKGGKRFGNTKV 176

Query: 186 MKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGG---------DSLGKN 236
           MKNVANTSVLKW G+LLCLWEGG+PYEIESG+LDT+G+  + + G              +
Sbjct: 177 MKNVANTSVLKWAGRLLCLWEGGEPYEIESGSLDTVGRFNVENNGCESCDDDDSSDRDLS 236

Query: 237 SKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFY 296
             D+WD AA++LKPIL GVFKMPPKR LSHYK+D  R RLLTV+CNAEDMLLPRSNFTF 
Sbjct: 237 GHDIWDTAADLLKPILQGVFKMPPKRFLSHYKVDGRRKRLLTVTCNAEDMLLPRSNFTFC 296

Query: 297 EFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISAL 356
           E+DS FKL+  +EF I DH+MIHDWAFTDTHYILFANRVKL+ +GS+ A+ G+SPM+SAL
Sbjct: 297 EYDSEFKLIQTKEFKIDDHMMIHDWAFTDTHYILFANRVKLNPIGSIAAMCGMSPMVSAL 356

Query: 357 SVNPSKPTSPVYLLPRFPNK-SVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQI 415
           S+NPS  +SP+Y+LPRF +K S G RDWRVPVE  SQ+WL+H GNA+E ++ +G+ +IQI
Sbjct: 357 SLNPSNESSPIYILPRFSDKYSRGGRDWRVPVEVSSQLWLIHSGNAYETREDNGDLKIQI 416

Query: 416 HACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCT 475
            A +CSY WF+FQ +FGY+WQS +LDPS+MNL   + +LLPHLV+VS++LD  GNC  C 
Sbjct: 417 QASACSYRWFDFQKMFGYDWQSNKLDPSVMNLNRGDDKLLPHLVKVSMTLDSTGNCNSCD 476

Query: 476 VEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQT 535
           VEPLN W K SDFP+IN ++SG+K   +Y+A S GTR  LPHFPFD VVK ++ +  V+T
Sbjct: 477 VEPLNGWNKPSDFPVINSSWSGKKNKYMYSAASSGTRSELPHFPFDMVVKFDLDSNLVRT 536

Query: 536 WSVGTRRFIGEPIFVPKG-----VEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALV 590
           WS G RRF+GEP+FVPK       EEDDGY++V+EYAVS++RCYL+IL+ KKIGE DA+V
Sbjct: 537 WSTGARRFVGEPMFVPKNSVEEGEEEDDGYIVVVEYAVSVERCYLVILDAKKIGESDAVV 596

Query: 591 ARLEVPRHLNFPLGFHGFW 609
           +RLEVPR+L FP+GFHG W
Sbjct: 597 SRLEVPRNLTFPMGFHGLW 615

Cleaves asymmetrically a variety of linear and cyclic carotenoids at the 9-10 double bond. Produces one C(13) beta-ionone and the C(27) 10'-apo-beta-carotenal required for production of a graft-transmissible inhibitor of axillary meristen development and shoot branching. No activity on lycopene, lutein, zeaxanthin, violaxanthin or neoxanthin. Probably not involved in abscisic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 2

>sp\|P74334\|ACOX_SYNY3 Apocarotenoid-15,15'-oxygenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1541 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function description

>sp\|Q6PBW5\|RP65A_DANRE Retinoid isomerohydrolase OS=Danio rerio GN=rpe65a PE=2 SV=1	Back alignment and function description

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|Q9M6E8\|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1	Back alignment and function description

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function description

>sp\|A9C3R9\|RP65B_DANRE All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio GN=rpe65b PE=1 SV=1	Back alignment and function description

>sp\|O49505\|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		614
255541130		642	9-cis-epoxycarotenoid dioxygenase, putat	0.964	0.922	0.733	0.0
310896479		605	carotenoid cleavage dioxygenase 7 [Actin	0.977	0.991	0.708	0.0
306450597		621	CCD7-like protein [Lotus japonicus]	0.991	0.980	0.687	0.0
261863854		621	carotenoid cleavage dioxygenase 7 [Petun	0.978	0.967	0.681	0.0
359807642		618	carotenoid cleavage dioxygenase 7 [Glyci	0.944	0.938	0.712	0.0
350535122		663	carotenoid cleavage dioxygenase 7 [Solan	0.975	0.903	0.678	0.0
356495887		614	PREDICTED: carotenoid cleavage dioxygena	0.933	0.933	0.710	0.0
225453464		610	PREDICTED: carotenoid cleavage dioxygena	0.980	0.986	0.690	0.0
357504533		621	Carotenoid cleavage dioxygenase [Medicag	0.965	0.954	0.684	0.0
449445728		614	PREDICTED: carotenoid cleavage dioxygena	0.988	0.988	0.659	0.0

>gi\|255541130\|ref\|XP_002511629.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi\|223548809\|gb\|EEF50298.1\| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/601 (73%), Positives = 508/601 (84%), Gaps = 9/601 (1%)

Query: 13  RFLSPLTALRPLQKV-STPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDYQ 71
           +F SP+  L P   + S  + K PR +S++ PDN    IS+  T    IDD  AAFWDYQ
Sbjct: 43  KFPSPIQ-LPPSHLIPSQARLKPPRVISISAPDNTH--ISSHVTFLEPIDDVIAAFWDYQ 99

Query: 72  FLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAF 131
           FLFVSQRSET  P+TL LV+GA+PSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAF
Sbjct: 100 FLFVSQRSETVEPVTLRLVEGAVPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAF 159

Query: 132 EFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKVMKNVAN 191
             DGV GEVK+MAKYVKT+A+VEEHDP+T+TWRFT+RGPFSVLK GK  GNTKVMKNVAN
Sbjct: 160 SIDGVDGEVKFMAKYVKTEAKVEEHDPETNTWRFTYRGPFSVLKAGKIVGNTKVMKNVAN 219

Query: 192 TSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGD---SLGKNSKDLWDVAAEML 248
           TSVL+WGG+LLCLWEGG+PYEIES TLDTIG+  M+DG D      +N  D+WD+AA +L
Sbjct: 220 TSVLRWGGRLLCLWEGGNPYEIESSTLDTIGRFDMIDGCDLTMDGKQNGGDIWDLAAGLL 279

Query: 249 KPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQ 308
           KP+LYG+FKMPPKRLLSHYKLD  RNRL+T+SCNAEDMLLPRSNFTFYE+D NFKLL +Q
Sbjct: 280 KPLLYGMFKMPPKRLLSHYKLDGKRNRLITMSCNAEDMLLPRSNFTFYEYDQNFKLLQRQ 339

Query: 309 EFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVY 368
           EFNI DHLMIHDWAFTDT+YILFANR+KLDV+GSM AV GLSPMISALSVNPSK  SPVY
Sbjct: 340 EFNIPDHLMIHDWAFTDTYYILFANRIKLDVMGSMAAVCGLSPMISALSVNPSKSISPVY 399

Query: 369 LLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQ 428
           LLPRFP+K    RDWRVPVEAPSQMWLLHVGNA+E  D +GN +IQ+HACSCSY+WFNFQ
Sbjct: 400 LLPRFPDKLFSRRDWRVPVEAPSQMWLLHVGNAYEAIDDNGNLKIQVHACSCSYQWFNFQ 459

Query: 429 NLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDF 488
            +FGY+WQ+GRLDPSIMN++E+  +LLPH+V+VSI L  +G+ QKC V+PL QW K +DF
Sbjct: 460 RMFGYDWQNGRLDPSIMNVQEN--KLLPHIVEVSIDLGANGDYQKCNVQPLIQWSKPADF 517

Query: 489 PIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPI 548
           P+INP +SGQK   +YAATS G+RRALPHFPFDTVVKLNVL  S  TW VG R FIGEPI
Sbjct: 518 PVINPDFSGQKNKYVYAATSSGSRRALPHFPFDTVVKLNVLDNSRHTWYVGARSFIGEPI 577

Query: 549 FVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGF 608
           F+P G EEDDGYLLV+EYAV+ QRCYL+ILNPK+IGE +A+VA+LEVP+H NFPLGFHGF
Sbjct: 578 FIPNGCEEDDGYLLVVEYAVARQRCYLVILNPKRIGEANAVVAKLEVPKHFNFPLGFHGF 637

Query: 609 W 609
           W
Sbjct: 638 W 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|310896479\|gb\|ADP37985.1\| carotenoid cleavage dioxygenase 7 [Actinidia chinensis]	Back alignment and taxonomy information

>gi\|306450597\|gb\|ADM88552.1\| CCD7-like protein [Lotus japonicus]	Back alignment and taxonomy information

>gi\|261863854\|gb\|ACY01408.1\| carotenoid cleavage dioxygenase 7 [Petunia x hybrida]	Back alignment and taxonomy information

>gi\|359807642\|ref\|NP_001241167.1\| carotenoid cleavage dioxygenase 7 [Glycine max] gi\|300676592\|gb\|ADK26570.1\| carotenoid cleavage dioxygenase 7 [Glycine max]	Back alignment and taxonomy information

>gi\|350535122\|ref\|NP_001234433.1\| carotenoid cleavage dioxygenase 7 [Solanum lycopersicum] gi\|262262692\|gb\|ACY39882.1\| carotenoid cleavage dioxygenase 7 [Solanum lycopersicum] gi\|262262694\|gb\|ACY39883.1\| carotenoid cleavage dioxygenase 7 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|356495887\|ref\|XP_003516802.1\| PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|225453464\|ref\|XP_002274198.1\| PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Vitis vinifera] gi\|297734574\|emb\|CBI16625.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357504533\|ref\|XP_003622555.1\| Carotenoid cleavage dioxygenase [Medicago truncatula] gi\|355497570\|gb\|AES78773.1\| Carotenoid cleavage dioxygenase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449445728\|ref\|XP_004140624.1\| PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		614
UNIPROTKB\|Q7XU29		609	OSJNBb0034G17.9 "OSJNBb0034G17	0.895	0.903	0.571	7.8e-181
UNIPROTKB\|Q28175		533	RPE65 "Retinoid isomerohydrola	0.184	0.212	0.386	8e-15
UNIPROTKB\|F1PXT9		533	RPE65 "Retinoid isomerohydrola	0.184	0.212	0.386	8e-15
UNIPROTKB\|F1S830		533	RPE65 "Uncharacterized protein	0.184	0.212	0.386	8e-15
UNIPROTKB\|Q16518		533	RPE65 "Retinoid isomerohydrola	0.184	0.212	0.386	1e-14
ZFIN\|ZDB-GENE-040426-1717		531	rpe65a "retinal pigment epithe	0.426	0.493	0.259	1e-14
UNIPROTKB\|Q9TVB8		533	RPE65 "Retinoid isomerohydrola	0.185	0.213	0.396	1.3e-14
UNIPROTKB\|Q9YGX2		533	RPE65 "Retinoid isomerohydrola	0.177	0.204	0.406	1.4e-14
MGI\|MGI:98001		533	Rpe65 "retinal pigment epithel	0.184	0.212	0.363	4.7e-14
UNIPROTKB\|Q746V1		509	GSU3417 "Dioxygenase, putative	0.205	0.247	0.343	7.3e-14

UNIPROTKB\|Q7XU29 OSJNBb0034G17.9 "OSJNBb0034G17.9 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
 Identities = 323/565 (57%), Positives = 417/565 (73%)

Query:    58 AEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGS 117
             AE D  +AAFWDY  LF SQR E    I L + +GAIP DFP+GTYYL GPG+F+DDHGS
Sbjct:    44 AETDTLSAAFWDYNLLFRSQRDECLDSIPLRVTEGAIPPDFPAGTYYLAGPGIFSDDHGS 103

Query:   118 TVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGG 177
             TVHPLDGHGYLR+F F      + Y A++V+T A+ EE      +WRFTHRGPFSVL+GG
Sbjct:   104 TVHPLDGHGYLRSFRFRPGDRTIHYSARFVETAAKREESRDGA-SWRFTHRGPFSVLQGG 162

Query:   178 KKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMD---GGDSLG 234
             KK GN KVMKNVANTSVL+WGG+LLCLWEGG PYE++  TL+T+G   ++      D+  
Sbjct:   163 KKVGNVKVMKNVANTSVLRWGGRLLCLWEGGQPYEVDPRTLETVGPFDLLGLAAADDNKA 222

Query:   235 KNSKDL---W------DVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAED 285
              N+      W      D AA +L+P+L GVF MP KRLL+HYK+D  R RLL V+CNAED
Sbjct:   223 TNASAARRPWLQEAGLDAAARLLRPVLSGVFDMPGKRLLAHYKIDPRRGRLLMVACNAED 282

Query:   286 MLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTA 345
             MLLPRS+FTFYEFD++F L+ K+EF + DHLMIHDWAFTDTHYIL  NR+KLD+ GS+ A
Sbjct:   283 MLLPRSHFTFYEFDAHFDLVQKREFVVPDHLMIHDWAFTDTHYILLGNRIKLDIPGSLLA 342

Query:   346 VSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELK 405
             ++G  PMI+AL+V+P + ++PVYLLPR P    G RDW VP+EAPSQMW +HVGNAFE  
Sbjct:   343 LTGTHPMIAALAVDPRRQSTPVYLLPRSPETEAGGRDWSVPIEAPSQMWSVHVGNAFEEA 402

Query:   406 DVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISL 465
             +  G  ++++H  SCSY+WF+F  +FGYNW   +LDPS MN  + + + LP LVQV+I L
Sbjct:   403 NRRGGLDVRLHMSSCSYQWFHFHRMFGYNWHHKKLDPSFMNAAKGK-EWLPRLVQVAIEL 461

Query:   466 DVDGNCQKCTVEPLN-QWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVV 524
             D  G C++C+V  L+ Q  + +DFP INP+Y+ Q+   +YA  + G+RR LP+FPFD+VV
Sbjct:   462 DRTGECRRCSVRRLSDQHARPADFPAINPSYANQRNRFVYAGAASGSRRFLPYFPFDSVV 521

Query:   525 KLNVLTKSVQTWSVGTRRFIGEPIFVPKGVEEDDGYLLVIEYAVSIQRCYLIILNPKKIG 584
             K++V   S + WS   R+F+GEP+FVP G  ED GY+L++EYAVS  RC+L++L+ KKIG
Sbjct:   522 KVDVSDGSARWWSTDGRKFVGEPVFVPTGGGEDGGYVLLVEYAVSKHRCHLVVLDAKKIG 581

Query:   585 EGDALVARLEVPRHLNFPLGFHGFW 609
               +ALVA+LEVP++L FP+GFHGFW
Sbjct:   582 TENALVAKLEVPKNLTFPMGFHGFW 606

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0016121 "carotene catabolic process" evidence=ISS

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=ISS

UNIPROTKB\|Q28175 RPE65 "Retinoid isomerohydrolase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PXT9 RPE65 "Retinoid isomerohydrolase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S830 RPE65 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q16518 RPE65 "Retinoid isomerohydrolase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1717 rpe65a "retinal pigment epithelium-specific protein 65a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9TVB8 RPE65 "Retinoid isomerohydrolase" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9YGX2 RPE65 "Retinoid isomerohydrolase" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:98001 Rpe65 "retinal pigment epithelium 65" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q746V1 GSU3417 "Dioxygenase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XJM2	CCD7_ARATH	1, ., 1, 4, ., 9, 9, ., n, 2	0.6203	0.9609	0.9546	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.976
4th Layer	1.14.99.n2	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		614
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-110
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	3e-61
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	5e-09
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	1e-06

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

 Score = 1023 bits (2647), Expect = 0.0
 Identities = 399/608 (65%), Positives = 486/608 (79%), Gaps = 15/608 (2%)

Query: 11  PPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDY 70
           P +F  PL         S P    PRA+S++ PD+  ++ +       E D ++AAFWDY
Sbjct: 6   PTKFPPPLKLPPIHHHPSPPPLAPPRAISISTPDSTALARTGT-----EDDSTSAAFWDY 60

Query: 71  QFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRA 130
           QFLFVSQRSET  P+ L +V+GAIPSDFPSGTYYL GPGLFTDDHGSTVHPLDGHGYLRA
Sbjct: 61  QFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRA 120

Query: 131 FEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNTKVMKNVA 190
           F  DG    V+Y A+YVKT+A+ EEHDP+T TWRFT+RGPFSVLKGGK+ GN KVMKNVA
Sbjct: 121 FHIDGGDRPVQYSARYVKTEAKKEEHDPETRTWRFTYRGPFSVLKGGKRVGNVKVMKNVA 180

Query: 191 NTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSL---GKNSKDLWDVAAEM 247
           NTSVLKWGG+LLCLWEGG+PYEI+SGTL+TIG+  +    DS         D WD+AA +
Sbjct: 181 NTSVLKWGGRLLCLWEGGEPYEIDSGTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARL 240

Query: 248 LKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNK 307
           LKPIL GVFKMP KRLLSHYK+D  RNRLL V+CNAEDMLLPRSNFTFYEFD++FKL+ +
Sbjct: 241 LKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQR 300

Query: 308 QEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPV 367
           +EF + DHLMIHDWAFTDTHY+L ANRVKLDV GS+ A++GLSPMISAL+V+PS+P+SPV
Sbjct: 301 KEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPV 360

Query: 368 YLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNF 427
           YLLPRFP K  G RDWRVPVE PSQ+WL+HVGNA+E +D  GN  IQ+HA +CSY+WF+F
Sbjct: 361 YLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSF 420

Query: 428 QNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPL-NQWKKSS 486
             +FGY+WQ+ +LDPS+MN  + + +LLPHLVQVSI LD  G+C+ C VEPL NQW+K +
Sbjct: 421 HRMFGYDWQNKKLDPSVMNNAKGK-ELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPA 479

Query: 487 DFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGE 546
           DFP+INP++SGQK    YAA + G+R+ LPHFPFD+VVKL+V   S ++WS G RRF+GE
Sbjct: 480 DFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSARSWSTGARRFVGE 539

Query: 547 PIFVPK-----GVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNF 601
           P+FVP+     G EEDDGY+LV+EYAVS +RCYL+IL+ K+IGE DA+VA+LEVP+HL F
Sbjct: 540 PVFVPRKSSQGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTF 599

Query: 602 PLGFHGFW 609
           P+GFHGFW
Sbjct: 600 PMGFHGFW 607

Length = 610

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		614
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.76

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Probab=100.00  E-value=5.5e-130  Score=1101.40  Aligned_cols=599  Identities=66%  Similarity=1.196  Sum_probs=508.0

Q ss_pred             cccccCCCCCCCCcccCCCCcccCCCCCCCCceeEeecCCCCceecccCCccccCCCCccccccchhhccccCccccCCC
Q 043705            5 LLHKISPPRFLSPLTALRPLQKVSTPQAKIPRAVSLTKPDNNQVSISTPTTVQAEIDDSTAAFWDYQFLFVSQRSETTAP   84 (614)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~~~~E~~~~   84 (614)
                      ++| .+|+|+++|+++|+.|++.++|..+.+|+|+|++|++..   +++.+.  +.|+..++||||+++|+++++|..++
T Consensus         1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~f~~~~~E~~~~   74 (610)
T PLN02969          1 PSH-PIPTKFPPPLKLPPIHHHPSPPPLAPPRAISISTPDSTA---LARTGT--EDDSTSAAFWDYQFLFVSQRSETKDP   74 (610)
T ss_pred             CCC-CCCccCCCcccCCcccCCCCCcccccccceeeecCccce---eccccc--CCCcchhHHHHhhhhhcCChhhcCCc
Confidence            356 569999999999987776666655559999999987763   333221  56999999999999999999996467


Q ss_pred             eeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEEeCCCCcEEEEEEEeccchhhhhcCCCCccce
Q 043705           85 ITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWR  164 (614)
Q Consensus        85 ~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f~~~~g~v~y~~RyV~T~~~~~e~~~~~~~~~  164 (614)
                      ++|.+|+|+||+|||+|||||||||+++.+++++.||||||||||+|+|++|.++|+|+||||||++|++|+++++..++
T Consensus        75 ~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVrT~~~~~E~~ag~~~~~  154 (610)
T PLN02969         75 VRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVKTEAKKEEHDPETRTWR  154 (610)
T ss_pred             cccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeeccHHHHHHHHhCCccee
Confidence            88877999999999999999999999998777789999999999999999743369999999999999999999887788


Q ss_pred             eeecCCcccccCCcccCCcccccCcceeeeEEECCEEEEEeeCCCceeecCCCCceeeeeccCCCCCcCC---CCCcchh
Q 043705          165 FTHRGPFSVLKGGKKFGNTKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMMDGGDSLG---KNSKDLW  241 (614)
Q Consensus       165 ~~~~g~fs~~~~~~~~~n~~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT~g~~~~~~~~~~~~---~~~~~~~  241 (614)
                      ++++|||+.++++..++|.+.+||+|||||++||||||||||+|.||+|||+||||+|.++|.+.++...   ...+++|
T Consensus       155 ~~~~~pfs~~~~~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~TLeT~G~~d~~~~~~~~~~~~~~~~~~~  234 (610)
T PLN02969        155 FTYRGPFSVLKGGKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDSGTLETIGRFDLAPDDDSSKDDRLQGSDAW  234 (610)
T ss_pred             eeeccchhcccCCCCcccccccccCCCcceeeeCCEEEEecCCCCCeEcCcCccceeecccccccccccccccccccccc
Confidence            8999999988765555666678999999999999999999999999999999999999999955432222   2347899


Q ss_pred             hhhhhhccccccceeeeCCccccCCCcCCCCCCcEEEEEeccccCCCCCccEEEEEEcCCCcEEeeEEEeecccceeeee
Q 043705          242 DVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDW  321 (614)
Q Consensus       242 ~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~p~~~~iHdf  321 (614)
                      |+++++++|.|+|++++|...||||||+||.||+|++|+|+.++++++++.+++|++|++|++++.+++++|.++|||||
T Consensus       235 ~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~~d~~G~~~~~~~~~~p~~~~iHDf  314 (610)
T PLN02969        235 DLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYEFDADFKLVQRKEFKLDDHLMIHDW  314 (610)
T ss_pred             cccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEEEEECCCCCEecceeecCCCcceeeee
Confidence            99999999999999999989999999999999999999999876667788999999999999999999999999999999


Q ss_pred             eecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCCCCccceeeeEEeCCCceeeeeece
Q 043705          322 AFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNA  401 (614)
Q Consensus       322 a~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~~~~~~w~~~~~~~~~~f~fH~~NA  401 (614)
                      +|||||+||+++|+++|+.++|.++.|..++++||+|+|++++++|+||||++++....++|+++++++++||+||++||
T Consensus       315 aiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NA  394 (610)
T PLN02969        315 AFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNA  394 (610)
T ss_pred             eccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEECcCCCcccceeeeeEEeeCCCeEEEeccce
Confidence            99999999999999999988776677888899999999999964599999998653236788777899755999999999


Q ss_pred             eeccCCCCCeEEEEEEee--eccCCcccccccccccCCCCCCcccccccccccccCCeEEEEEEEccCCCceeEeecccc
Q 043705          402 FELKDVDGNTEIQIHACS--CSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPL  479 (614)
Q Consensus       402 yEe~d~~g~~~v~iv~d~--~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~R~~idl~~~g~~~~~~~~~l  479 (614)
                      ||+++++|+.  +|++|+  |.|+++++..+++++|....+++.+++...+. ...++|+||+||+.+.+.+..|+.+.+
T Consensus       395 fEe~~~~g~~--~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~r~~idl~~~g~~~~~~~~~l  471 (610)
T PLN02969        395 YEERDDRGNL--RIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGK-ELLPHLVQVSIDLDRTGDCRSCDVEPL  471 (610)
T ss_pred             eecCCCCCce--EEEEEEeccccccccccccccccccccccCcchhcccCcc-cccceEEEEEEeCCcCCccccccceee
Confidence            9986544642  344555  56888888777777777666555544433332 245799999999974455544555556


Q ss_pred             c-ccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEEcCCCccccccEEeeC-----C
Q 043705          480 N-QWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPK-----G  553 (614)
Q Consensus       480 ~-~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~~~~~~~~gEPvFVPr-----~  553 (614)
                      . .++.++|||+||++|.||+|||+|+++.++.+...+..++|+|+|+|+++|+++.|++++++|++|||||||     +
T Consensus       472 ~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~~tg~~~~w~~g~~~~~~EPvFVPr~~~p~~  551 (610)
T PLN02969        472 SNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDVPDGSARSWSTGARRFVGEPVFVPRKSSQGG  551 (610)
T ss_pred             ccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEECCCCCEEEEEeCCCCcccCCEEecCCCCCCC
Confidence            3 246789999999999999999999988765433233456899999999999999999999999999999999     4


Q ss_pred             CCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705          554 VEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN  612 (614)
Q Consensus       554 ~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~  612 (614)
                      .+|||||||++|+|..+++|+|+||||++|++|++||||++||+++++|+||||+|+++
T Consensus       552 ~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~v~~P~GfHG~w~~~  610 (610)
T PLN02969        552 GEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKHLTFPMGFHGFWADE  610 (610)
T ss_pred             CccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcccCCCccccccccCC
Confidence            58999999999999999999999999999999777999999999966699999999874

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		614
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		1e-36
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		3e-09
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		1e-07

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

Iteration: 1

Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 148/531 (27%), Positives = 224/531 (42%), Gaps = 92/531 (17%) Query: 90 VDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKT 149 V+G+IP D GT Y GPGL HP DG G + AF+F G G V + +K+V+T Sbjct: 38 VEGSIPPDL-QGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPG-DGRVHFQSKFVRT 95 Query: 150 DAQVEEHDPQTDTWRFTHRGPFSVLKGG---KKFGNTKVMKNVANTSVLKWGGKLLCLWE 206 VEE + +RG F G K + + +KN+ANT++ WG +LL LWE Sbjct: 96 QGYVEEQK----AGKMIYRGVFGSQPAGGWLKTIFDLR-LKNIANTNITYWGDRLLALWE 150 Query: 207 GGDPYEIESGTLDTIGQLQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSH 266 GG P+ +E L TIG D LG + ++A R+ Sbjct: 151 GGQPHRLEPSNLATIGL-------DDLGGILAEGQPLSAH--------------PRIDPA 189 Query: 267 YKLDAPRNRLLTVSCNAEDMLLPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDT 326 D + +T S + S T E D KLL ++ IHD+A T Sbjct: 190 STFDGGQPCYVTFSIKSSLS----STLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPH 245 Query: 327 HYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVP 386 + I N V L+ L + + G + +P KP + L+PR G R+P Sbjct: 246 YAIFLQNNVTLNGLPYLFGLRGAG---ECVQFHPDKPAQ-IILVPR-----DGGEIKRIP 296 Query: 387 VEAPSQMWLLHVGNAFE------LKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRL 440 V+A ++ H NAFE L + N+ Q+ + NF N L Sbjct: 297 VQA---GFVFHHANAFEENGKIILDSICYNSLPQVDT-DGDFRSTNFDN----------L 342 Query: 441 DPSIMNLKESEYQLLPHLVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKT 500 DP + + + P V L V C+ FP+++P G+ Sbjct: 343 DPGQL----WRFTIDPAAATVEKQLMVSRCCE---------------FPVVHPQQVGRPY 383 Query: 501 TCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWSVGTRRFIGEPIFVPK--GVEEDD 558 +Y + + + P ++K+++ + + S F GEPIFVP+ GV EDD Sbjct: 384 RYVYMGAA---HHSTGNAPLQAILKVDLESGTETLRSFAPHGFAGEPIFVPRPGGVAEDD 440 Query: 559 GYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFW 609 G+LL + Y + R L+IL+ + I +A L++ H+ +PL HG W Sbjct: 441 GWLLCLIYKADLHRSELVILDAQDITA--PAIATLKLKHHIPYPL--HGSW 487

PyMOL of 2biw

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		614
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-101
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	3e-79
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	3e-70

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

 Score =  314 bits (806), Expect = e-101
 Identities = 138/564 (24%), Positives = 220/564 (39%), Gaps = 82/564 (14%)

Query: 50  ISTPTTVQAEIDDSTAAFWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPG 109
           +++P T        + +  D+   + SQ  E    +    V+G+IP D   GT Y  GPG
Sbjct: 2   VTSPPTSSP--SQRSYSPQDWLRGYQSQPQEWDYWVED--VEGSIPPDL-QGTLYRNGPG 56

Query: 110 LFTDDHGSTVHPLDGHGYLRAFEFDGVTGEVKYMAKYVKTDAQVEEHDPQTDTWRFTHRG 169
           L         HP DG G + AF+F G  G V + +K+V+T   VEE        +  +RG
Sbjct: 57  LLEIGDRPLKHPFDGDGMVTAFKFPG-DGRVHFQSKFVRTQGYVEEQK----AGKMIYRG 111

Query: 170 PFSVLKGGKKFGN--TKVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQLQMM 227
            F     G          +KN+ANT++  WG +LL LWEGG P+ +E   L TIG     
Sbjct: 112 VFGSQPAGGWLKTIFDLRLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGL---- 167

Query: 228 DGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAPRNRLLTVSCNAEDML 287
                             ++   +  G       R+      D  +   +T S  +    
Sbjct: 168 -----------------DDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSS--- 207

Query: 288 LPRSNFTFYEFDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVS 347
              S  T  E D   KLL ++         IHD+A T  + I   N V L+    +  + 
Sbjct: 208 -LSSTLTLLELDPQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNG---LPYLF 263

Query: 348 GLSPMISALSVNPSKPTSPVYLLPRFPNKSVGVRDWRVPVEAPSQMWLLHVGNAFELKDV 407
           GL      +  +P KP   + L+PR   +   ++   V        ++ H  NAFE    
Sbjct: 264 GLRGAGECVQFHPDKPAQ-IILVPRDGGE---IKRIPVQ-----AGFVFHHANAFEENG- 313

Query: 408 DGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPHLVQVSISLDV 467
                 +I   S  Y           +        +  NL          L + +I    
Sbjct: 314 ------KIILDSICYNSL-----PQVDTDGDFRSTNFDNLDPG------QLWRFTIDPAA 356

Query: 468 DGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLN 527
                    + +       +FP+++P   G+    +Y   +     +  + P   ++K++
Sbjct: 357 AT----VEKQLMVSR--CCEFPVVHPQQVGRPYRYVYMGAA---HHSTGNAPLQAILKVD 407

Query: 528 VLTKSVQTWSVGTRRFIGEPIFVPK--GVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGE 585
           + + +    S     F GEPIFVP+  GV EDDG+LL + Y   + R  L+IL+ + I  
Sbjct: 408 LESGTETLRSFAPHGFAGEPIFVPRPGGVAEDDGWLLCLIYKADLHRSELVILDAQDITA 467

Query: 586 GDALVARLEVPRHLNFPLGFHGFW 609
               +A L++  H+  P   HG W
Sbjct: 468 PA--IATLKLKHHI--PYPLHGSW 487

PyMOL of 2biw

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		614
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

Probab=100.00  E-value=3.4e-107  Score=899.81  Aligned_cols=463  Identities=29%  Similarity=0.482  Sum_probs=386.8

Q ss_pred             ccchhhccccCccccCCCeeeeeeecCCCCCCCCceEEEecCCccccCCCCcccCCCccccEEEEEE-eCCCCcEEEEEE
Q 043705           67 FWDYQFLFVSQRSETTAPITLHLVDGAIPSDFPSGTYYLTGPGLFTDDHGSTVHPLDGHGYLRAFEF-DGVTGEVKYMAK  145 (614)
Q Consensus        67 ~~d~~~~f~~~~~E~~~~~~l~~v~G~IP~~L~~GtlyRnGPg~~~~~~~~~~H~FDGdGmv~~f~f-~~~~g~v~y~~R  145 (614)
                      -.+|+++|+++.+|. + ..|.+|+|+||+|| +|+|||||||+++.++.++.||||||||||+|+| ++  |+|+|+||
T Consensus        17 ~~~~~~~f~~~~~E~-~-~~l~~V~G~IP~~L-~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~--G~v~y~~R   91 (490)
T 2biw_A           17 PQDWLRGYQSQPQEW-D-YWVEDVEGSIPPDL-QGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGD--GRVHFQSK   91 (490)
T ss_dssp             HHHHHHTTSCCCSCE-E-EECCCEEECCCTTC-CEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSS--SCCEEEEE
T ss_pred             ccchhhhccCccccC-C-cccceEEeCCCCCC-CeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCC--CEEEEEcc
Confidence            457999999999896 3 35776899999999 9999999999998876678899999999999999 75  89999999


Q ss_pred             EeccchhhhhcCCCCccceeeecCCcccccCCcccCCc--ccccCcceeeeEEECCEEEEEeeCCCceeecCCCCceeee
Q 043705          146 YVKTDAQVEEHDPQTDTWRFTHRGPFSVLKGGKKFGNT--KVMKNVANTSVLKWGGKLLCLWEGGDPYEIESGTLDTIGQ  223 (614)
Q Consensus       146 yV~T~~~~~e~~~~~~~~~~~~~g~fs~~~~~~~~~n~--~~~kn~ANT~V~~~ggrLlAl~E~g~P~~lDp~TLeT~g~  223 (614)
                      ||||++|++|+++++    .++++.|+....+....|.  ...+|+|||||++|+||||||||+|.||+|||.||||+|.
T Consensus        92 ~v~T~~~~~e~~ag~----~~~~~~fg~~~~~~~~~~~~~~~~~~~aNT~v~~~~g~llAl~E~~~p~~ldp~tLeT~G~  167 (490)
T 2biw_A           92 FVRTQGYVEEQKAGK----MIYRGVFGSQPAGGWLKTIFDLRLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGL  167 (490)
T ss_dssp             ECCCHHHHHHHHHTS----CCSBCTTSCCCSSTHHHHTTCCCBCCCCCSEEEEETTEEEEECTTSCCEEECTTTCCEEEE
T ss_pred             eEeCHHHHHHHHhCC----cccccccccCCCCchhhhhcccccCCCCEEEEEEECCEEEEEEcCCCCEecccccccEeee
Confidence            999999999988764    3445556554432222221  1268999999999999999999999999999999999999


Q ss_pred             eccCCCCCcCCCCCcchhhhhhhhccccccceeeeCCccccCCCcCCCC------CCcEEEEEeccccCCCCCccEEEEE
Q 043705          224 LQMMDGGDSLGKNSKDLWDVAAEMLKPILYGVFKMPPKRLLSHYKLDAP------RNRLLTVSCNAEDMLLPRSNFTFYE  297 (614)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~g~~~~p~~~~tAHpk~Dp~------tg~l~~~~~~~~~~~~~~~~~~~~~  297 (614)
                      ++|+|.+.                           +...+|||||+||.      ||||++|+++.    ++...+++|+
T Consensus       168 ~d~~g~l~---------------------------~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~----~~~~~~~~~~  216 (490)
T 2biw_A          168 DDLGGILA---------------------------EGQPLSAHPRIDPASTFDGGQPCYVTFSIKS----SLSSTLTLLE  216 (490)
T ss_dssp             CCTTTTSC---------------------------TTCCCCSCCEEESSCTTTTTCCEEEEEEEEE----SSEEEEEEEE
T ss_pred             eccCCccc---------------------------CCcccccCceECccccccCCCCeEEEEEecC----CCCcEEEEEE
Confidence            99987531                           11259999999999      99999999986    3456699999


Q ss_pred             EcCCCcEEeeEEEeecccceeeeeeecCceEEEeecceeechhhhhhhhcCCCcceecceeCCCCCCccEEEEeCCCCCC
Q 043705          298 FDSNFKLLNKQEFNILDHLMIHDWAFTDTHYILFANRVKLDVLGSMTAVSGLSPMISALSVNPSKPTSPVYLLPRFPNKS  377 (614)
Q Consensus       298 ~d~~g~~~~~~~~~~p~~~~iHdfa~Teny~V~~~~p~~~d~~~~~~~~~G~~~~~~~l~~~p~~~t~~i~vipR~~~~~  377 (614)
                      +|++|++.+..++++|.++|||||+|||||+||+++|+++|+.+++   .|.+++.++++|+|+++++ |+||||+ +. 
T Consensus       217 ~~~~G~~~~~~~~~~~~~~~~HDfaiTeny~V~~~~P~~~~~~~~~---~g~~~~~~~~~~~p~~~tr-~~VipR~-~~-  290 (490)
T 2biw_A          217 LDPQGKLLRQKTETFPGFAFIHDFAITPHYAIFLQNNVTLNGLPYL---FGLRGAGECVQFHPDKPAQ-IILVPRD-GG-  290 (490)
T ss_dssp             ECTTSCEEEEEEEEEESCCCCCCCEECSSEEEEEECCEEECCHHHH---TTSSCGGGGEEECTTSCEE-EEEEETT-SC-
T ss_pred             ECCCCCEEeeEEEeCCCCceEeeeeccCCEEEEEeCCeEEcHHHHh---hccCCccceeEeCCCCCcE-EEEEECC-CC-
Confidence            9999999999999999999999999999999999999999988754   4666788999999999995 9999999 43 


Q ss_pred             CCccceeeeEEeCCCceeeeeeceeeccCCCCCeEEEEEEeeeccCCcccccccccccCCCCCCcccccccccccccCCe
Q 043705          378 VGVRDWRVPVEAPSQMWLLHVGNAFELKDVDGNTEIQIHACSCSYEWFNFQNLFGYNWQSGRLDPSIMNLKESEYQLLPH  457 (614)
Q Consensus       378 ~~~~~w~~~~~~~~~~f~fH~~NAyEe~d~~g~~~v~iv~d~~~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  457 (614)
                        .++|   |+++ +||+||++||||++   |    +|++|.|+|++..+...       .   ..+... .......++
T Consensus       291 --~v~~---f~~~-~~f~fH~~NA~Ee~---~----~Iv~d~~~~~~~~~~~~-------~---~~~~~~-~~~~~~~~~  346 (490)
T 2biw_A          291 --EIKR---IPVQ-AGFVFHHANAFEEN---G----KIILDSICYNSLPQVDT-------D---GDFRST-NFDNLDPGQ  346 (490)
T ss_dssp             --CCEE---EEEC-CCEEEEEEEEEEET---T----EEEEEEEEESCCCCCCT-------T---CCGGGC-CGGGSCCCE
T ss_pred             --ccEE---EecC-CCeEEecccceecC---C----eEEEEEeccCCcccccc-------c---cccccc-ccccCCCce
Confidence              3678   9998 59999999999983   3    38889999987653110       0   011110 011224579


Q ss_pred             EEEEEEEccCCCceeEeecccccccCCCccCcccCCCCCCCccceEEEeeecCCcCCCCCCCCCeeEEEeccCCcEEEEE
Q 043705          458 LVQVSISLDVDGNCQKCTVEPLNQWKKSSDFPIINPTYSGQKTTCIYAATSLGTRRALPHFPFDTVVKLNVLTKSVQTWS  537 (614)
Q Consensus       458 L~R~~idl~~~g~~~~~~~~~l~~~~~~~EfP~in~~~~G~~yry~Y~~~~~~~~~~~~~~~~~~lvK~D~~~g~~~~w~  537 (614)
                      |+||+|||++ +.+.   .+.|.  +.++|||+||++|.||+|||+|+++.+..   ..+..+++|+|+|+++|+.+.|+
T Consensus       347 l~R~~i~l~~-g~v~---~~~l~--~~~~EfP~In~~~~G~~~Ry~Y~~~~~~~---~~~~~~~~l~K~D~~tg~~~~~~  417 (490)
T 2biw_A          347 LWRFTIDPAA-ATVE---KQLMV--SRCCEFPVVHPQQVGRPYRYVYMGAAHHS---TGNAPLQAILKVDLESGTETLRS  417 (490)
T ss_dssp             EEEEEEETTT-TEEE---EEEEE--CSCEEEEECCGGGTTSCCSEEEEEECSSS---SSCCCCCEEEEEETTTTEEEEEE
T ss_pred             EEEEEEECCC-CceE---EEecc--CCcccccccChhhCCceeeeEEEEeecCC---CCCCCCCeEEEEECCCCCEEEEE
Confidence            9999999986 4432   24454  67899999999999999999999976421   12346899999999999999999


Q ss_pred             cCCCccccccEEeeC--CCCCCCeEEEEEEEeCCCCeeEEEEEcCCCCCCCCceeEEEEcccccCCCccccccccCC
Q 043705          538 VGTRRFIGEPIFVPK--GVEEDDGYLLVIEYAVSIQRCYLIILNPKKIGEGDALVARLEVPRHLNFPLGFHGFWDNN  612 (614)
Q Consensus       538 ~~~~~~~gEPvFVPr--~~~EDDG~LL~~v~d~~~~~s~L~VLDA~~l~eg~~pVAr~~lP~~~~vP~GfHG~w~~~  612 (614)
                      +++++|+||||||||  +.+|||||||++|+|..+++|+|+||||++|++|  ||||++||++  ||+||||+|+++
T Consensus       418 ~g~g~~~~EPvFVPrp~~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~--pvArv~lP~r--vP~GfHG~wv~~  490 (490)
T 2biw_A          418 FAPHGFAGEPIFVPRPGGVAEDDGWLLCLIYKADLHRSELVILDAQDITAP--AIATLKLKHH--IPYPLHGSWAQT  490 (490)
T ss_dssp             CTTTEECCCCEEEECTTCCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSC--CSEEEECSSC--CCCCCCEEEEEC
T ss_pred             CCCCccccCCEEecCCCCCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcC--ceEEEeCCCc--CCCCccccccCC
Confidence            999999999999999  4689999999999999999999999999999984  8999999998  699999999864

PyMOL of 2biw

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00