Citrus Sinensis ID: 043713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccEEEEEEccEEEHHHHHHHHHHHHHHHHcHHccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEcHcHcEEEEEEEcccEEccHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
vplalfggsgnYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQftkdlsvpaeTRVNAINEIctqakfsdvTKHFLVVLAengrlrnlDTIAKRFVELTMAHKGEVKVTVTsviplppeeEKELKETLQETLGqgkkvkveqkvdpsilgglVVEFGQKVFDMSIKSRARQMERFlrepihfgtl
Flexible Loop (DISEMBL)
vplalfggsgNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEIctqakfsdvTKHFLVVLaengrlrnldTIAKRFVELtmahkgevkvtVTSVIPLPPEEEKELKETLQetlgqgkkvkveqkvdpsilgglvvefgQKVFDMSIKSRARQMERflrepihfgtl
Low Complexity Region (SEG)
VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIplppeeekelketlqetlgqgkkvkveqkvDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL
Disordered region (IsUnstruct)
***ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP****************************VDPSILGGLVVEFGQKVFDMSI********************
Disordered Region (DISOPRED)
VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFG**
Disordered Region (DISEMBL)
VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL
Disordered Region (DISPRO)
VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFGTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
P22778	244	ATP synthase subunit O, m	N/A	no	0.984	0.766	0.737	1e-80
Q96251	238	ATP synthase subunit O, m	yes	no	1.0	0.798	0.636	2e-68
Q5RD23	213	ATP synthase subunit O, m	yes	no	0.952	0.849	0.401	7e-32
P48047	213	ATP synthase subunit O, m	yes	no	0.952	0.849	0.395	3e-31
B2B9A1	213	ATP synthase subunit O, m	N/A	no	0.952	0.849	0.368	1e-29
Q2EN81	213	ATP synthase subunit O, m	yes	no	0.952	0.849	0.368	2e-28
B0VXH3	213	ATP synthase subunit O, m	yes	no	0.963	0.859	0.369	2e-28
B1MT69	213	ATP synthase subunit O, m	N/A	no	0.963	0.859	0.364	3e-28
P13621	213	ATP synthase subunit O, m	yes	no	0.952	0.849	0.368	5e-28
B3EX21	213	ATP synthase subunit O, m	N/A	no	0.952	0.849	0.362	1e-27

>sp|P22778|ATPO_IPOBA ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 166/187 (88%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TR
Sbjct: 58  VPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTR 117

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           VNAI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VIP
Sbjct: 118 VNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIP 177

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LP +EEKELK TLQE +GQGK V++EQK+DP+ILGGLVVEFGQKVFDMSI++RARQMERF
Sbjct: 178 LPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERF 237

Query: 181 LREPIHF 187
           LREP++F
Sbjct: 238 LREPLNF 244

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Ipomoea batatas (taxid: 4120)

>sp|Q96251|ATPO_ARATH ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2

 Score =  258 bits (659), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 155/190 (81%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR
Sbjct: 49  VPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTR 108

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           + AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VIP
Sbjct: 109 LAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIP 168

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKEL ETLQE +G GKK+ VEQK+DPSI GGL+VEF QKV DMSI++RA+QMER 
Sbjct: 169 LPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERL 228

Query: 181 LREPIHFGTL 190
           LREP+ F  L
Sbjct: 229 LREPVDFNNL 238

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RD23|ATPO_PONAB ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 1/182 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct: 31  PVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            ++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS  PL
Sbjct: 90  KSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  L+  L QG+ +K+E K DPSILGG++V  G+K  DMS+K++ +++ R +
Sbjct: 150 EEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAM 209

Query: 182 RE 183
           RE
Sbjct: 210 RE 211

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Pongo abelii (taxid: 9601)

>sp|P48047|ATPO_HUMAN ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct: 31  PVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            ++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS  PL
Sbjct: 90  KSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  L+  L QG+ +K+E K DPSILGG++V  G+K  DMS+K++ +++ R +
Sbjct: 150 EEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAM 209

Query: 182 RE 183
           RE
Sbjct: 210 RE 211

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Homo sapiens (taxid: 9606)

>sp|B2B9A1|ATPO_RHIFE ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 1/182 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +V
Sbjct: 31  PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            ++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+  PL
Sbjct: 90  KSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  LQ  L + + +K+E K DPSI+GG+++  G+K  DMS K++ +++ R +
Sbjct: 150 DEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVM 209

Query: 182 RE 183
           RE
Sbjct: 210 RE 211

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rhinolophus ferrumequinum (taxid: 59479)

>sp|Q2EN81|ATPO_PIG ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 1/182 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct: 31  PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            +++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+  PL
Sbjct: 90  KSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  L+  L +G+ +K+E KVDPSI+GG++V  G+K  DMS K++ +++ R +
Sbjct: 150 DEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAM 209

Query: 182 RE 183
           RE
Sbjct: 210 RE 211

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Sus scrofa (taxid: 9823)

>sp|B0VXH3|ATPO_CALJA ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +V
Sbjct: 31  PVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSIKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+  PL
Sbjct: 90  KSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  L+  L QG+ +K+E K DPSI+GG++V  G+K  DMS K++ +++ + +
Sbjct: 150 EEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAM 209

Query: 182 REPI 185
           RE I
Sbjct: 210 REVI 213

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Callithrix jacchus (taxid: 9483)

>sp|B1MT69|ATPO_CALMO ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/184 (36%), Positives = 107/184 (58%), Gaps = 1/184 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +V
Sbjct: 31  PVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+  PL
Sbjct: 90  KSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  L+  L QG+ +K+E K DPSI+GG++V  G+K  DMS K++ +++ + +
Sbjct: 150 EETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAM 209

Query: 182 REPI 185
           RE I
Sbjct: 210 REVI 213

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Callicebus moloch (taxid: 9523)

>sp|P13621|ATPO_BOVIN ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2

 Score =  124 bits (310), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 107/182 (58%), Gaps = 1/182 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct: 31  PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+   L
Sbjct: 90  KSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASAL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                 ELK  L+  L +G+ +K+E K+DPSI+GG++V  G+K  DMS K++ +++ R +
Sbjct: 150 DEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAM 209

Query: 182 RE 183
           RE
Sbjct: 210 RE 211

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Bos taurus (taxid: 9913)

>sp|B3EX21|ATPO_SORAR ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 1/182 (0%)

Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
           P+ ++G  G YA+ALY AA K N L++VE E+L + +  K+         +  V    +V
Sbjct: 31  PIQIYGVEGRYATALYSAASKQNKLDQVEKELLRVAQLLKEPKLAASIL-NPHVKRAIKV 89

Query: 62  NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPL 121
            +I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+   L
Sbjct: 90  KSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASAL 149

Query: 122 PPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
           P     ELK  LQ  L + + +K+E K DPSI+GG++V  G+K  DMS +++ +++ + +
Sbjct: 150 PEATLSELKTVLQSFLSKNQVLKLEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSKAM 209

Query: 182 RE 183
           RE
Sbjct: 210 RE 211

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Sorex araneus (taxid: 42254)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
114682	244	RecName: Full=ATP synthase subunit O, mi	0.984	0.766	0.737	6e-79
23507248	230	oligomycin sensitivity conferring protei	0.984	0.813	0.727	4e-78
4774163	244	F1-ATP synthase delta subunit [Ipomoea b	0.984	0.766	0.732	6e-78
23507246	230	oligomycin sensitivity conferring protei	0.984	0.813	0.727	4e-77
57282883	217	putative oligomycin sensitivity conferri	0.952	0.834	0.734	2e-75
57282885	217	putative oligomycin sensitivity conferri	0.952	0.834	0.734	1e-74
356557156	245	PREDICTED: ATP synthase subunit O, mitoc	1.0	0.775	0.694	3e-74
57282881	217	putative oligomycin sensitivity conferri	0.952	0.834	0.734	3e-74
351720905	245	uncharacterized protein LOC100499796 [Gl	1.0	0.775	0.694	4e-74
57282887	217	putative oligomycin sensitivity conferri	0.952	0.834	0.729	6e-74

>gi|114682|sp|P22778.1|ATPO_IPOBA RecName: Full=ATP synthase subunit O, mitochondrial; AltName: Full=Oligomycin sensitivity conferral protein; Short=OSCP; Flags: Precursor gi|168270|gb|AAA33388.1| F-1-ATPase delta subunit precursor (EC 3.6.1.3) [Ipomoea batatas]

 Score =  298 bits (763), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 138/187 (73%), Positives = 166/187 (88%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TR
Sbjct: 58  VPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTR 117

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           VNAI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VIP
Sbjct: 118 VNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIP 177

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LP +EEKELK TLQE +GQGK V++EQK+DP+ILGGLVVEFGQKVFDMSI++RARQMERF
Sbjct: 178 LPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERF 237

Query: 181 LREPIHF 187
           LREP++F
Sbjct: 238 LREPLNF 244

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23507248|gb|AAN38067.1| oligomycin sensitivity conferring protein [Silene latifolia]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 165/187 (88%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+A++GG  NYASALY+AA K   L KVESE+LDLVEA+KK+ T+FQFTKDLSVP++ R
Sbjct: 44  VPVAMYGGCANYASALYLAATKAKQLNKVESELLDLVEATKKSPTFFQFTKDLSVPSDIR 103

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
             A+ +IC QAKFSDV K+FLVVLAENGRLR++D+IAKRF ELTMAH+GE++ T T+VIP
Sbjct: 104 SKALKDICDQAKFSDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATATTVIP 163

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKELKETLQE LGQG  VK+EQK+DP+ILGG++VEFGQKVFDMSI++RARQMERF
Sbjct: 164 LPPAEEKELKETLQEILGQGITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERF 223

Query: 181 LREPIHF 187
           LREP++ 
Sbjct: 224 LREPVNI 230

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4774163|dbj|BAA77508.1| F1-ATP synthase delta subunit [Ipomoea batatas]

 Score =  295 bits (755), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 137/187 (73%), Positives = 165/187 (88%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TR
Sbjct: 58  VPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTR 117

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           VNAI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI 
Sbjct: 118 VNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIA 177

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LP +EEKELK TLQE +GQGK V++EQK+DP+ILGGLVVEFGQKVFDMSI++RARQMERF
Sbjct: 178 LPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERF 237

Query: 181 LREPIHF 187
           LREP++F
Sbjct: 238 LREPLNF 244

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23507246|gb|AAN38066.1| oligomycin sensitivity conferring protein [Silene latifolia]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 164/187 (87%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+A++GG  NYASALY+AA K   L KVESE+LDLVEA+KK+  + QFTKDLSVP+ TR
Sbjct: 44  VPVAMYGGCANYASALYLAATKAKELNKVESELLDLVEATKKSPMFSQFTKDLSVPSVTR 103

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
             A+ +IC QAKFSDV K+FLVVLAENGRLR++D+IAKRF ELTMAH+GE++ TVT+VIP
Sbjct: 104 SKALKDICDQAKFSDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATVTTVIP 163

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKELKETLQE LGQG  VK+EQK+DP+ILGG++VEFGQKVFDMSI++RARQMERF
Sbjct: 164 LPPTEEKELKETLQEILGQGITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERF 223

Query: 181 LREPIHF 187
           LREP++ 
Sbjct: 224 LREPVNI 230

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57282883|emb|CAF74845.1| putative oligomycin sensitivity conferring protein [Silene latifolia]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 160/181 (88%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+A++GG  NYASALY+AA K   L KVESE+LDLVEA+KK+ T+FQFTKDLSVP++ R
Sbjct: 37  VPVAMYGGCANYASALYLAATKAKQLNKVESELLDLVEATKKSPTFFQFTKDLSVPSDIR 96

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
             A+ +IC QAKFSDV K+FLVVLAENGRLR++D+IAKRF ELTMAH+GE++ T T+VIP
Sbjct: 97  SKALKDICDQAKFSDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATATTVIP 156

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKELKETLQE LGQG  VK+EQK+DP+ILGG++VEFGQKVFDMSI++RARQMERF
Sbjct: 157 LPPAEEKELKETLQEILGQGITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERF 216

Query: 181 L 181
           L
Sbjct: 217 L 217

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57282885|emb|CAF74846.1| putative oligomycin sensitivity conferring protein [Silene dioica] gi|57282889|emb|CAF74848.1| putative oligomycin sensitivity conferring protein [Silene diclinis]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 159/181 (87%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+A++GG  NYASALY+AA K   L KVESE+LDLVEA+KK+  + QFTKDLSVP+ TR
Sbjct: 37  VPVAMYGGCANYASALYLAATKAKELNKVESELLDLVEATKKSPMFSQFTKDLSVPSVTR 96

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
             A+ +IC QAKFSDV K+FLVVLAENGRLR++D+IAKRF ELTMAH+GE++ TVT+VIP
Sbjct: 97  SKALKDICDQAKFSDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATVTTVIP 156

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKELKETLQE LGQG  VK+EQK+DP+ILGG++VEFGQKVFDMSI++RARQMERF
Sbjct: 157 LPPAEEKELKETLQEILGQGTTVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERF 216

Query: 181 L 181
           L
Sbjct: 217 L 217

Source: Silene dioica

Species: Silene dioica

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557156|ref|XP_003546884.1| PREDICTED: ATP synthase subunit O, mitochondrial-like [Glycine max]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 161/190 (84%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VPLALFGGSGNYASALYIA+VK NA+EKVE+E+L  VEA K +  + QF +DLSV  + R
Sbjct: 56  VPLALFGGSGNYASALYIASVKANAVEKVETELLQFVEAVKNSPIFSQFIRDLSVAKDVR 115

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           V  I +IC +AKFSDVTK+FLV++AENGRL+N+DTIAKRF +L+MA+KGEV+ TVT+V+P
Sbjct: 116 VKVIQDICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFAQLSMAYKGEVQATVTTVVP 175

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPPEEEK LKETLQE +G G KV +EQK+DPSILGGLV+EF QKVFDMSIK+RA+QMER 
Sbjct: 176 LPPEEEKALKETLQEIIGSGAKVHLEQKIDPSILGGLVLEFSQKVFDMSIKTRAQQMERI 235

Query: 181 LREPIHFGTL 190
           LREP+    +
Sbjct: 236 LREPVSIANI 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57282881|emb|CAF74844.1| putative oligomycin sensitivity conferring protein [Silene latifolia]

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/181 (73%), Positives = 159/181 (87%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+A++GG  NYASALY+AA K   L KVESE+LDLVEA+KK+  + QFTKDLSVP+ TR
Sbjct: 37  VPVAMYGGCANYASALYLAATKAKELNKVESELLDLVEATKKSPMFSQFTKDLSVPSVTR 96

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
             A+ +IC QAKFSDV K+FLVVLAENGRLR++D+IAKRF ELTMAH+GE++ TVT+VIP
Sbjct: 97  SKALKDICDQAKFSDVMKNFLVVLAENGRLRHVDSIAKRFSELTMAHRGELQATVTTVIP 156

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKELKETLQE LGQG  VK+EQK+DP+ILGG++VEFGQKVFDMSI++RARQMERF
Sbjct: 157 LPPTEEKELKETLQEILGQGITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERF 216

Query: 181 L 181
           L
Sbjct: 217 L 217

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720905|ref|NP_001236168.1| uncharacterized protein LOC100499796 [Glycine max] gi|255626669|gb|ACU13679.1| unknown [Glycine max]

 Score =  282 bits (722), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 160/190 (84%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VPLALFGGSGNYASALYIA+VK NA+ KVESE+L  VEA K +  + QF +DLSV  + R
Sbjct: 56  VPLALFGGSGNYASALYIASVKANAVAKVESELLQFVEAVKNSPIFSQFIRDLSVAKDVR 115

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           V  I +IC +AKFSDVTK+FLV++AENGRL+N+DTIAKRF +L+MA+KGEV+ TVT+V+P
Sbjct: 116 VKVIQDICGEAKFSDVTKNFLVIVAENGRLKNIDTIAKRFAQLSMAYKGEVQATVTTVVP 175

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPPEEEK LKETLQE +G G KV +EQK+DPSILGGLV+EF QKVFDMSIK+RA+QMER 
Sbjct: 176 LPPEEEKALKETLQEIIGSGAKVHLEQKIDPSILGGLVLEFSQKVFDMSIKTRAQQMERI 235

Query: 181 LREPIHFGTL 190
           LREP+    +
Sbjct: 236 LREPVSIANI 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57282887|emb|CAF74847.1| putative oligomycin sensitivity conferring protein [Silene dioica]

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 158/181 (87%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
           VP+A++GG  NYASALY+AA K   L KVESE+LDLVEA+KK+ T+FQFTKDLSVP++ R
Sbjct: 37  VPVAMYGGCANYASALYLAATKAKQLNKVESELLDLVEATKKSPTFFQFTKDLSVPSDIR 96

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
             A+ +IC QAKFSDV K+FLVVLAENGRLR++  IAKRF ELTMAH+GE++ T T+VIP
Sbjct: 97  SKALKDICDQAKFSDVMKNFLVVLAENGRLRHVGGIAKRFSELTMAHRGELQATATTVIP 156

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           LPP EEKELKETLQE LGQG  VK+EQK+DP+ILGG++VEFGQKVFDMSI++RARQMERF
Sbjct: 157 LPPAEEKELKETLQEILGQGITVKLEQKIDPNILGGIIVEFGQKVFDMSIRTRARQMERF 216

Query: 181 L 181
           L
Sbjct: 217 L 217

Source: Silene dioica

Species: Silene dioica

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2181625	238	ATP5 "AT5G13450" [Arabidopsis	1.0	0.798	0.521	3.8e-46
UNIPROTKB|Q5RD23	213	ATP5O "ATP synthase subunit O,	0.952	0.849	0.335	8.7e-24
UNIPROTKB|P48047	213	ATP5O "ATP synthase subunit O,	0.952	0.849	0.329	2.9e-23
UNIPROTKB|B2B9A1	213	ATP5O "ATP synthase subunit O,	0.952	0.849	0.307	1.6e-22
UNIPROTKB|P13621	213	ATP5O "ATP synthase subunit O,	0.952	0.849	0.313	5.5e-22
UNIPROTKB|E2RPE8	225	ATP5O "Uncharacterized protein	0.952	0.804	0.302	7e-22
UNIPROTKB|J9P621	213	ATP5O "Uncharacterized protein	0.952	0.849	0.302	7e-22
UNIPROTKB|B0VXH3	213	ATP5O "ATP synthase subunit O,	0.963	0.859	0.304	3.9e-21
UNIPROTKB|Q2EN81	213	ATP5O "ATP synthase subunit O,	0.952	0.849	0.302	4.9e-21
UNIPROTKB|B1MT69	213	ATP5O "ATP synthase subunit O,	0.963	0.859	0.298	4.9e-21

TAIR|locus:2181625 ATP5 "AT5G13450" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 99/190 (52%), Positives = 130/190 (68%)

Query:     1 VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
             VP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR
Sbjct:    49 VPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTR 108

Query:    61 VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIX 120
             + AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI 
Sbjct:   109 LAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIP 168

Query:   121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
                                          DPSI GGL+VEF QKV DMSI++RA+QMER 
Sbjct:   169 LPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERL 228

Query:   181 LREPIHFGTL 190
             LREP+ F  L
Sbjct:   229 LREPVDFNNL 238

GO:0000275 "mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB|Q5RD23 ATP5O "ATP synthase subunit O, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 61/182 (33%), Positives = 93/182 (51%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct:    31 PVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS    
Sbjct:    90 KSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSILGG++V  G+K  DMS+K++ +++ R +
Sbjct:   150 EEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAM 209

Query:   182 RE 183
             RE
Sbjct:   210 RE 211

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|P48047 ATP5O "ATP synthase subunit O, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 60/182 (32%), Positives = 92/182 (50%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct:    31 PVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS    
Sbjct:    90 KSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSILGG++V  G+K  DMS+K++ +++ R +
Sbjct:   150 EEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAM 209

Query:   182 RE 183
             RE
Sbjct:   210 RE 211

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005496 "steroid binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS;IDA

GO:0008144 "drug binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005215 "transporter activity" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|B2B9A1 ATP5O "ATP synthase subunit O, mitochondrial" [Rhinolophus ferrumequinum (taxid:59479)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/182 (30%), Positives = 92/182 (50%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +V
Sbjct:    31 PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+    
Sbjct:    90 KSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG+++  G+K  DMS K++ +++ R +
Sbjct:   150 DEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVM 209

Query:   182 RE 183
             RE
Sbjct:   210 RE 211

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|P13621 ATP5O "ATP synthase subunit O, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 57/182 (31%), Positives = 91/182 (50%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct:    31 PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+    
Sbjct:    90 KSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASAL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG++V  G+K  DMS K++ +++ R +
Sbjct:   150 DEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAM 209

Query:   182 RE 183
             RE
Sbjct:   210 RE 211

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2RPE8 ATP5O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 55/182 (30%), Positives = 91/182 (50%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +V
Sbjct:    43 PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKMAASIMNPY-IKRSVKV 101

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++N++  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+    
Sbjct:   102 KSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVISAFSTMMSVHRGEVPCTVTTASPL 161

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG++V  G+K  DMS +++ +++ R +
Sbjct:   162 DEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGMIVRIGEKYADMSARTKIQKLSRAM 221

Query:   182 RE 183
             RE
Sbjct:   222 RE 223

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|J9P621 ATP5O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 55/182 (30%), Positives = 91/182 (50%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +V
Sbjct:    31 PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKMAASIMNPY-IKRSVKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++N++  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+    
Sbjct:    90 KSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVISAFSTMMSVHRGEVPCTVTTASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG++V  G+K  DMS +++ +++ R +
Sbjct:   150 DEATLTELKTVLKSFLSKGQVLKLEVKVDPSIMGGMIVRIGEKYADMSARTKIQKLSRAM 209

Query:   182 RE 183
             RE
Sbjct:   210 RE 211

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|B0VXH3 ATP5O "ATP synthase subunit O, mitochondrial" [Callithrix jacchus (taxid:9483)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 56/184 (30%), Positives = 91/184 (49%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +V
Sbjct:    31 PVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSIKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+    
Sbjct:    90 KSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG++V  G+K  DMS K++ +++ + +
Sbjct:   150 EEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAM 209

Query:   182 REPI 185
             RE I
Sbjct:   210 REVI 213

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|Q2EN81 ATP5O "ATP synthase subunit O, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/182 (30%), Positives = 91/182 (50%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V
Sbjct:    31 PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              +++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+    
Sbjct:    90 KSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG++V  G+K  DMS K++ +++ R +
Sbjct:   150 DEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAM 209

Query:   182 RE 183
             RE
Sbjct:   210 RE 211

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

UNIPROTKB|B1MT69 ATP5O "ATP synthase subunit O, mitochondrial" [Callicebus moloch (taxid:9523)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/184 (29%), Positives = 91/184 (49%)

Query:     2 PLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRV 61
             P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +V
Sbjct:    31 PVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKV 89

Query:    62 NAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXX 121
              ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+    
Sbjct:    90 KSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPL 149

Query:   122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
                                         DPSI+GG++V  G+K  DMS K++ +++ + +
Sbjct:   150 EETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAM 209

Query:   182 REPI 185
             RE I
Sbjct:   210 REVI 213

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A9WWS5	ATPD_BRUSI	No assigned EC number	0.3072	0.8578	0.8763	yes	no
A5V3X2	ATPD_SPHWW	No assigned EC number	0.3454	0.8578	0.8858	yes	no
Q06647	ATPO_RAT	No assigned EC number	0.3571	0.9526	0.8497	yes	no
Q5RD23	ATPO_PONAB	No assigned EC number	0.4010	0.9526	0.8497	yes	no
Q1MAY9	ATPD_RHIL3	No assigned EC number	0.3407	0.9105	0.9202	yes	no
B8H5I3	ATPD_CAUCN	No assigned EC number	0.3128	0.8473	0.875	yes	no
O74190	ATPO_KLULA	No assigned EC number	0.3494	0.9684	0.8932	yes	no
C3M9S4	ATPD_RHISN	No assigned EC number	0.3351	0.8578	0.8670	yes	no
P22778	ATPO_IPOBA	No assigned EC number	0.7379	0.9842	0.7663	N/A	no
Q2YLI4	ATPD_BRUA2	No assigned EC number	0.3072	0.8578	0.8763	yes	no
Q2K3G7	ATPD_RHIEC	No assigned EC number	0.3388	0.9052	0.9148	yes	no
Q4FP35	ATPD_PELUB	No assigned EC number	0.3222	0.9052	0.9297	yes	no
B5ZSP0	ATPD_RHILW	No assigned EC number	0.3407	0.9105	0.9202	yes	no
C0Z779	ATPD_BREBN	No assigned EC number	0.3148	0.8368	0.9085	yes	no
B9JTR5	ATPD_AGRVS	No assigned EC number	0.3085	0.8789	0.8652	yes	no
Q2EN81	ATPO_PIG	No assigned EC number	0.3681	0.9526	0.8497	yes	no
Q9DB20	ATPO_MOUSE	No assigned EC number	0.3681	0.9526	0.8497	yes	no
Q96251	ATPO_ARATH	No assigned EC number	0.6368	1.0	0.7983	yes	no
B0VXH3	ATPO_CALJA	No assigned EC number	0.3695	0.9631	0.8591	yes	no
A6UDM4	ATPD_SINMW	No assigned EC number	0.3371	0.8789	0.8882	yes	no
A5VSE4	ATPD_BRUO2	No assigned EC number	0.3072	0.8578	0.8763	yes	no
Q75EZ3	ATPO_ASHGO	No assigned EC number	0.3422	0.9684	0.8888	yes	no
Q9A2V6	ATPD_CAUCR	No assigned EC number	0.3128	0.8473	0.875	yes	no
P09457	ATPO_YEAST	No assigned EC number	0.3422	0.9684	0.8679	yes	no
Q92LK5	ATPD_RHIME	No assigned EC number	0.3313	0.8947	0.9042	yes	no
Q11DD8	ATPD_MESSB	No assigned EC number	0.3050	0.9210	0.9408	yes	no
Q57B85	ATPD_BRUAB	No assigned EC number	0.3072	0.8578	0.8763	yes	no
A9M840	ATPD_BRUC2	No assigned EC number	0.3072	0.8578	0.8763	yes	no
O74479	ATPO_SCHPO	No assigned EC number	0.3405	0.9631	0.8472	yes	no
B2S7M6	ATPD_BRUA1	No assigned EC number	0.3072	0.8578	0.8763	yes	no
Q7CWL8	ATPD_AGRT5	No assigned EC number	0.3166	0.9210	0.9308	yes	no
P48047	ATPO_HUMAN	No assigned EC number	0.3956	0.9526	0.8497	yes	no
A7IH28	ATPD_XANP2	No assigned EC number	0.3089	0.9157	0.8656	yes	no
Q2G5N8	ATPD_NOVAD	No assigned EC number	0.3045	0.9052	0.9347	yes	no
Q6FSD5	ATPO_CANGA	No assigned EC number	0.3208	0.9684	0.8888	yes	no
B9JBZ8	ATPD_AGRRK	No assigned EC number	0.3428	0.8789	0.8882	yes	no
B4RD44	ATPD_PHEZH	No assigned EC number	0.3067	0.8473	0.875	yes	no
Q8FYR2	ATPD_BRUSU	No assigned EC number	0.3128	0.8578	0.8763	yes	no
P13621	ATPO_BOVIN	No assigned EC number	0.3681	0.9526	0.8497	yes	no
Q1AVH6	ATPD_RUBXD	No assigned EC number	0.3128	0.8421	0.8938	yes	no
Q24439	ATPO_DROME	No assigned EC number	0.3428	0.9105	0.8277	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam00213	171	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	2e-48
COG0712	178	COG0712, AtpH, F0F1-type ATP synthase, delta subun	7e-35
PRK05758	177	PRK05758, PRK05758, F0F1 ATP synthase subunit delt	6e-34
PRK13429	181	PRK13429, PRK13429, F0F1 ATP synthase subunit delt	5e-31
TIGR01145	172	TIGR01145, ATP_synt_delta, ATP synthase, F1 delta	5e-26
CHL00119	184	CHL00119, atpD, ATP synthase CF1 delta subunit; Va	1e-20
PRK13436	179	PRK13436, PRK13436, F0F1 ATP synthase subunit delt	7e-15
PRK13434	184	PRK13434, PRK13434, F0F1 ATP synthase subunit delt	9e-14
PRK13430	271	PRK13430, PRK13430, F0F1 ATP synthase subunit delt	2e-13
PRK13441	180	PRK13441, PRK13441, F0F1 ATP synthase subunit delt	1e-12
PRK13428	445	PRK13428, PRK13428, F0F1 ATP synthase subunit delt	2e-08
TIGR03321	246	TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F	7e-06

>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit

 Score =  154 bits (393), Expect = 2e-48
 Identities = 67/173 (38%), Positives = 103/173 (59%), Gaps = 3/173 (1%)

Query: 9   SGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEIC 68
           +  YA AL+  A +  +L++VE ++  L     +     +F  +  + AE +   +  + 
Sbjct: 2   ARRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVF 61

Query: 69  TQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKE 128
              K S++TK+FL +LAENGRL  L  IA+ F EL   H+G V+ TVTS +PL  E+ K 
Sbjct: 62  -GGKLSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAVPLSEEQLKA 120

Query: 129 LKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
           LK  L++    GKKVK+E KVDPS++GG+VV  G KV D S++ +  +++R L
Sbjct: 121 LKAALEKKT--GKKVKLETKVDPSLIGGVVVRVGDKVIDGSVRGKLERLKRAL 171

The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401. Length = 171

>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

 Score =  120 bits (304), Expect = 7e-35
 Identities = 55/171 (32%), Positives = 94/171 (54%), Gaps = 3/171 (1%)

Query: 9   SGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEIC 68
           +  YA AL+  A +   LE+VE E+  L E  K +    Q     +V AE +   +  I 
Sbjct: 8   ARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIF 67

Query: 69  TQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKE 128
            +     + ++FL +LAEN RL  L  I + F++L    +G V+  VTS   L  E+  +
Sbjct: 68  -KKIGDPLLQNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTK 126

Query: 129 LKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMER 179
           L+  L++    GKKVK+  K+DPS++GGL+++ G +V D S++ + +++ +
Sbjct: 127 LEAKLEKKF--GKKVKLNNKIDPSLIGGLIIKVGDEVIDGSVRGKLKRLAK 175

Length = 178

>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated

 Score =  118 bits (298), Expect = 6e-34
 Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 5/173 (2%)

Query: 9   SGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEIC 68
           +  YA AL+  A++  +L+    E+  L E ++  D          V AE +   +  + 
Sbjct: 8   ARPYAKALFEVALEKGSLDAWSEELTFLAEVAENEDLA-ALLSSPLVSAEQKKKLLAAVF 66

Query: 69  TQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKE 128
                S+  ++FL VLAENGRL  L  I ++F  L   H+  V   VTS  PL  E+  +
Sbjct: 67  KSL--SEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDK 124

Query: 129 LKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
           LK  L++ L  G+KVK+ +KVDPS++GG++++ G +V D S++ +  +++  L
Sbjct: 125 LKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRVIDGSVRGKLERLKDAL 175

Length = 177

>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional

 Score =  111 bits (279), Expect = 5e-31
 Identities = 57/172 (33%), Positives = 98/172 (56%), Gaps = 14/172 (8%)

Query: 12  YASALYIAAVKTNALEKVESE---ILDLVEASKKADTYFQFTKDLS---VPAETRVNAIN 65
           YA AL+  A +   L+ V  E   + +L+E S +          LS   + AE +   + 
Sbjct: 10  YAKALFQLAKEKGQLDSVYEELKQLAELLEDSPE------LRDALSNPVLSAEEKKAVLE 63

Query: 66  EICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEE 125
           ++  + K S    +FL +LA+  RL  L  IA R++EL    KG V+ TVTS +PL   +
Sbjct: 64  KLLGKLKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQ 123

Query: 126 EKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQM 177
           ++ +++ L++    GKKV+++  VDPS++GG+VV+ G KV D S++++ R++
Sbjct: 124 QEAIRQKLEKMT--GKKVELDTAVDPSLIGGVVVKIGDKVLDASVRTQLRRL 173

Length = 181

>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit

 Score = 97.8 bits (244), Expect = 5e-26
 Identities = 47/170 (27%), Positives = 90/170 (52%), Gaps = 2/170 (1%)

Query: 12  YASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA 71
           YA AL+  A + ++LE+    +  + E  K      +F  +  + AE +   I  +  + 
Sbjct: 5   YAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGEQ 64

Query: 72  KFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKE 131
              + + + L++LAENGRL  L  I  +F++L+   +    V V S  PL  +++ ++ E
Sbjct: 65  -LDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAE 123

Query: 132 TLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
            L++  G   KVK+  KVD  ++GG+++  G +V D S++ + +++ R L
Sbjct: 124 KLEKITGA-AKVKLNCKVDKDLIGGVIIRIGDRVIDGSVRGQLKRLSRQL 172

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity [Energy metabolism, ATP-proton motive force interconversion]. Length = 172

>gnl|CDD|177042 CHL00119, atpD, ATP synthase CF1 delta subunit; Validated

 Score = 84.3 bits (209), Expect = 1e-20
 Identities = 47/170 (27%), Positives = 91/170 (53%), Gaps = 2/170 (1%)

Query: 12  YASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA 71
           YA AL   A + N +E++ ++I  ++    ++    +F  +  +    +   I +    +
Sbjct: 12  YAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKT-FGS 70

Query: 72  KFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKE 131
           + ++ T  FL+VL + GR+  LD I ++++EL           V++ +PL   +E+ L E
Sbjct: 71  QINENTLKFLMVLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIE 130

Query: 132 TLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL 181
            L+E +   K++K+   VDPS++GG +++ G KV D SIK + +Q+   L
Sbjct: 131 KLKE-MTNAKEIKLVITVDPSLIGGFLIKIGSKVIDTSIKGQLKQLASHL 179

Length = 184

>gnl|CDD|184053 PRK13436, PRK13436, F0F1 ATP synthase subunit delta; Provisional

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 3/169 (1%)

Query: 11  NYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQ 70
           NYA AL+  A + N +EK  +E+  ++E  K      +      +  E +   I++I + 
Sbjct: 10  NYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA 69

Query: 71  AKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELK 130
            K      +FL +LA+N     +  I K+FV+L+          + +  PL   +    +
Sbjct: 70  -KIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFE 128

Query: 131 ETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMER 179
             L + L   KKV +  K+DP ++ G+ ++   KVF+ SIKS+ +++++
Sbjct: 129 SKLSKKLN--KKVHLVNKIDPKLIAGIKIKVDNKVFENSIKSKLKELKK 175

Length = 179

>gnl|CDD|139571 PRK13434, PRK13434, F0F1 ATP synthase subunit delta; Provisional

 Score = 65.7 bits (160), Expect = 9e-14
 Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 6/181 (3%)

Query: 3   LALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVN 62
           +   G S  YASAL  AA   N+ E+VE E+ DLV+   K +    F    +V  E +  
Sbjct: 1   MNDSGVSKVYASALLGAA---NSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQ 57

Query: 63  AINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLP 122
                  + K SD+T +FL VL   GR   L  I K F       KG V+  + S   L 
Sbjct: 58  -TLAKNLRGKISDITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLE 116

Query: 123 PEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLR 182
           P +  +L   L E      +  +E   D ++LGG VV+F     + SI S+  ++++ + 
Sbjct: 117 PAQVDKLGSILSEKF--KSEFILEVSEDKNLLGGFVVQFNDLKIEKSIASQLGEIKKAML 174

Query: 183 E 183
           E
Sbjct: 175 E 175

Length = 184

>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 15  ALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFS 74
           AL  +A    AL+ VE E+  L               D + PAE +   +  +    K +
Sbjct: 106 ALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLY-GKVT 164

Query: 75  DVTKHFLVVLAEN--GRLRN---LDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKEL 129
            VT      LAE   GR R     + + +    L  A +G    TVT+ +PL  E+++ L
Sbjct: 165 PVT----ERLAEQAVGRPRGRSIEEGLDE-LSNLAAARRGRSVATVTTAVPLSDEQKQRL 219

Query: 130 KETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMER 179
              L    G  + V +  +VDPS+LGG+ V+ G +V D S+  R  ++ R
Sbjct: 220 AAALSRIYG--RPVHLNSEVDPSVLGGMRVQVGDEVIDGSVAGRLERLRR 267

Length = 271

>gnl|CDD|184054 PRK13441, PRK13441, F0F1 ATP synthase subunit delta; Provisional

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 9   SGNYASALYIAAVKTNALEKVESEILDLV-EASKKADTYFQFTKDLSVPAETRVNAINEI 67
           +  YA AL   A++    E+   E LDLV +  + A  +F    +  V  E +V+ I EI
Sbjct: 7   ASKYARALLNVAIELEKEEEY-GEFLDLVCQIYESAKEFFD---NPIVKPEKKVSLIKEI 62

Query: 68  CTQ--AKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEE 125
             +   +  +  ++FL ++ EN R + L  I   F    +  + +V V +T+   L  EE
Sbjct: 63  MKEFGQEMDEFFENFLNLVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEE 122

Query: 126 EKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMER 179
            K L++ +++ +   +    E+ +D S++ G VVEF  K  D++++ R +++ R
Sbjct: 123 LKLLRKFVRKYVL--RDPVFEETIDESLIAGAVVEFEGKRLDVTVQGRLKKIAR 174

Length = 180

>gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 15  ALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLS---VPAETRVNAINEICTQA 71
           AL   A +   +++VE +   L   S+  D   +    LS   VPA+ RV  + ++   A
Sbjct: 278 ALLERAERAGQVDEVEDQ---LFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGA 334

Query: 72  KFSDVTKHFLVVLAENGRL---RNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKE 128
             S V    + +L++   L   +  +       EL +A +GEV   V++   L   +   
Sbjct: 335 --STVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTR 392

Query: 129 LKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSR 173
           L E L    G  + V V+  +DP +LGGL +  G +V D ++ SR
Sbjct: 393 LTEVLSRIYG--RPVSVQLHIDPELLGGLSIAVGDEVIDGTLSSR 435

Length = 445

>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 75  DVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQ 134
           D      +V     RLR LD   K  +   +A  G   V V S   LP E+ +++++T++
Sbjct: 142 DTDLEERMVDVFVQRLRTLDPDEKAALAEALADSGN-PVLVRSAFELPEEQREQIRDTIR 200

Query: 135 ETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMER 179
           ETLG   ++++  + +P ++GG+ +  G      S+      +E 
Sbjct: 201 ETLGP--EIRLRFQTEPDLIGGIELTAGGHKLAWSVDDYLESLEE 243

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Length = 246

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	100.0
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	100.0
KOG1662	210	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	100.0
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	100.0
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	100.0
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	100.0
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	100.0
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	100.0
PRK13431	180	F0F1 ATP synthase subunit delta; Provisional	99.97
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.73
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	99.19
PRK06669	281	fliH flagellar assembly protein H; Validated	98.28
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	97.1
PRK03963	198	V-type ATP synthase subunit E; Provisional	96.97
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.93
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	96.87
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	96.23
PRK06328	223	type III secretion system protein; Validated	96.11
PRK06937	204	type III secretion system protein; Reviewed	95.88
PRK09098	233	type III secretion system protein HrpB; Validated	95.69
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	95.57
PRK05687	246	fliH flagellar assembly protein H; Validated	95.08
PRK01558	198	V-type ATP synthase subunit E; Provisional	95.02
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	95.0
PRK13386	236	fliH flagellar assembly protein H; Provisional	94.52
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	93.93
PRK01005	207	V-type ATP synthase subunit E; Provisional	92.17
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	90.33
PRK06032	199	fliH flagellar assembly protein H; Validated	89.5
PRK01194	185	V-type ATP synthase subunit E; Provisional	86.49

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.6e-47  Score=301.19  Aligned_cols=174  Identities=25%  Similarity=0.395  Sum_probs=170.2

Q ss_pred             cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713            6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA   85 (190)
Q Consensus         6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~   85 (190)
                      ..+|++||+|||++|.+.+.+++|.++|..+.+++.++|+|+.|+.||.+++++|.+++.++|++ ++++.+.|||++|+
T Consensus         5 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~ll~   83 (179)
T PRK13436          5 NKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKILA   83 (179)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999986 79999999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713           86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV  165 (190)
Q Consensus        86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v  165 (190)
                      +|+|+.++++|+++|.++++++.|+..|+|+||.|||++|+++|.+.|++++|  ++|+++++||||||||++|++||++
T Consensus        84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g--~~v~l~~~vDpslIGGi~i~~gd~v  161 (179)
T PRK13436         84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLN--KKVHLVNKIDPKLIAGIKIKVDNKV  161 (179)
T ss_pred             HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHC--CeEEEEeecCHHHcCceEEEECCEE
Confidence            99999999999999999999999999999999999999999999999999998  7999999999999999999999999


Q ss_pred             eehhHHHHHHHHHHHHc
Q 043713          166 FDMSIKSRARQMERFLR  182 (190)
Q Consensus       166 iD~Si~~~L~~l~~~l~  182 (190)
                      ||+|++++|++|++.|.
T Consensus       162 iD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        162 FENSIKSKLKELKKQVL  178 (179)
T ss_pred             eehhHHHHHHHHHHHHh
Confidence            99999999999999875

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=4.4e-46  Score=294.25  Aligned_cols=173  Identities=31%  Similarity=0.391  Sum_probs=167.1

Q ss_pred             cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713            6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA   85 (190)
Q Consensus         6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~   85 (190)
                      ..+|+|||+|||+   +.+.+++|.++|..+.+++.++|+|+.||.||.+++++|.+++.++|++ ++++.+.|||++|+
T Consensus         4 ~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL~   79 (184)
T PRK13434          4 SGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVLL   79 (184)
T ss_pred             hhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            5799999999999   5689999999999999999999999999999999999999999999976 79999999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713           86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV  165 (190)
Q Consensus        86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v  165 (190)
                      +|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.|++++|  ++|.++++||||||||++|++||++
T Consensus        80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g--~~v~l~~~vDpsLIGG~ii~igd~v  157 (184)
T PRK13434         80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFK--SEFILEVSEDKNLLGGFVVQFNDLK  157 (184)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHC--CEeEEEeeeChHHcCceEEEECCEE
Confidence            99999999999999999999999999999999999999999999999999998  7999999999999999999999999


Q ss_pred             eehhHHHHHHHHHHHHccc
Q 043713          166 FDMSIKSRARQMERFLREP  184 (190)
Q Consensus       166 iD~Si~~~L~~l~~~l~~~  184 (190)
                      ||+|+++||++|++.|...
T Consensus       158 iD~Svk~~L~~l~~~l~~~  176 (184)
T PRK13434        158 IEKSIASQLGEIKKAMLEK  176 (184)
T ss_pred             EeHhHHHHHHHHHHHHHhc
Confidence            9999999999999999654

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=100.00  E-value=9.8e-46  Score=290.12  Aligned_cols=176  Identities=32%  Similarity=0.491  Sum_probs=169.8

Q ss_pred             cccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713            4 ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV   83 (190)
Q Consensus         4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l   83 (190)
                      ...++|++||+|||++|.|++.++.|.++|..+.++++++|+|..++.||.+++++|.+++.++|++ ..++.+.|||.+
T Consensus         3 ~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~l   81 (178)
T COG0712           3 ELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLRL   81 (178)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999986 445999999999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713           84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ  163 (190)
Q Consensus        84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d  163 (190)
                      |++|+|+.++++|++.|..+.++++|+..|+||||.||+++|+++|.+.|+++++  +++.+.++||||||||++|++||
T Consensus        82 l~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~~--~~v~i~~~VD~sliGG~iI~vgd  159 (178)
T COG0712          82 LAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKFG--KKVKLNNKIDPSLIGGLIIKVGD  159 (178)
T ss_pred             HHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHhC--CCceEEeeeCHHHhCceEEEECC
Confidence            9999999999999999999999999999999999999999999999999999998  89999999999999999999999


Q ss_pred             EEeehhHHHHHHHHHHHHc
Q 043713          164 KVFDMSIKSRARQMERFLR  182 (190)
Q Consensus       164 ~viD~Si~~~L~~l~~~l~  182 (190)
                      .+||+|++++|++|++.|.
T Consensus       160 ~viD~Svr~~L~~l~~~l~  178 (178)
T COG0712         160 EVIDGSVRGKLKRLAKALK  178 (178)
T ss_pred             EEEechHHHHHHHHHHhcC
Confidence            9999999999999998763

>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]

Probab=100.00  E-value=2.5e-45  Score=284.51  Aligned_cols=185  Identities=48%  Similarity=0.753  Sum_probs=180.9

Q ss_pred             CCccccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHH
Q 043713            1 VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHF   80 (190)
Q Consensus         1 ~~~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nf   80 (190)
                      |||.++++.++||.|||+.|..++++|.+..||+.+.+.++.+|.|.+|+.||.++++.|..+++++++..++.+.+.||
T Consensus        26 pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~~~~~~~t~Nf  105 (210)
T KOG1662|consen   26 PPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEKLKLAPLTKNF  105 (210)
T ss_pred             CCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHHhcccHhHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999988899999999


Q ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE
Q 043713           81 LVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE  160 (190)
Q Consensus        81 L~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~  160 (190)
                      |.+|+||||+..+..|+.+|..++++|+|.+.|+||||.||+..+.++|+..|++.++.|+++.+++.|||||+||++++
T Consensus       106 lnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~~vdPSI~GGliVe  185 (210)
T KOG1662|consen  106 LNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVENKVDPSIIGGLIVE  185 (210)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEeecChhhhcceEEE
Confidence            99999999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             ECCEEeehhHHHHHHHHHHHHcccc
Q 043713          161 FGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       161 i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      +||+.+|.||++|++++.+.+.+.+
T Consensus       186 iGdK~vDmSI~tr~q~l~~ll~~~i  210 (210)
T KOG1662|consen  186 IGDKYVDMSIKTRLQKLNKLLEEPI  210 (210)
T ss_pred             EcCeeEeeeHHHHHHHHHHHhhccC
Confidence            9999999999999999999888753

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=100.00  E-value=2.3e-42  Score=273.04  Aligned_cols=180  Identities=26%  Similarity=0.434  Sum_probs=173.8

Q ss_pred             cccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713            4 ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV   83 (190)
Q Consensus         4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l   83 (190)
                      ....+|++||+|||++|.+.+.+++|.+++..+.+++.++|+|+++|.||.++.++|.+++.++|++ ++++.+.|||++
T Consensus         4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~~   82 (184)
T CHL00119          4 LVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLMV   82 (184)
T ss_pred             hHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999986 799999999999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713           84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ  163 (190)
Q Consensus        84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d  163 (190)
                      |++|+|+.+++.|++.|.++++++.|+..+.|+||.||+++++++|.+.|++++| ++++.+.+++||+++||+++++||
T Consensus        83 L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~-~~~v~l~~~vD~~ligGi~i~~g~  161 (184)
T CHL00119         83 LVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTN-AKEIKLVITVDPSLIGGFLIKIGS  161 (184)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhC-CCeEEEEeeeChHHhCcEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999997 378999999999999999999999


Q ss_pred             EEeehhHHHHHHHHHHHHcccc
Q 043713          164 KVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       164 ~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      ++||+|++++|+++++.|.+.+
T Consensus       162 ~~~D~Si~~~L~~l~~~l~~~~  183 (184)
T CHL00119        162 KVIDTSIKGQLKQLASHLDTVL  183 (184)
T ss_pred             EEEeHhHHHHHHHHHHHHHHhc
Confidence            9999999999999999998765

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=100.00  E-value=3.5e-42  Score=269.22  Aligned_cols=172  Identities=27%  Similarity=0.463  Sum_probs=167.0

Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 043713            8 GSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAEN   87 (190)
Q Consensus         8 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~   87 (190)
                      +|++||+|||++|.+.++++.|.+++..+.++++++|+|++||.||.++.++|.++++++|++ ++++.+.|||+++++|
T Consensus         1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~   79 (172)
T TIGR01145         1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN   79 (172)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence            589999999999999999999999999999999999999999999999999999999999986 7999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEee
Q 043713           88 GRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFD  167 (190)
Q Consensus        88 ~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD  167 (190)
                      +|+.+++.|+.+|.++++++.|+..++|+||.||+++++++|.+.|++++|. ++|.+.+++||+++||+++++||++||
T Consensus        80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~~~-~~v~~~~~vd~~ligGi~i~~~~~~iD  158 (172)
T TIGR01145        80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKITGA-AKVKLNCKVDKDLIGGVIIRIGDRVID  158 (172)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHhCC-CeEEEEEeECHHHhCceEEEECCEEEe
Confidence            9999999999999999999999999999999999999999999999999982 499999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 043713          168 MSIKSRARQMERFL  181 (190)
Q Consensus       168 ~Si~~~L~~l~~~l  181 (190)
                      +|++++|++|+++|
T Consensus       159 ~Si~~~L~~l~~~l  172 (172)
T TIGR01145       159 GSVRGQLKRLSRQL  172 (172)
T ss_pred             hhHHHHHHHHHhhC
Confidence            99999999999875

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=4.4e-42  Score=269.69  Aligned_cols=169  Identities=23%  Similarity=0.270  Sum_probs=162.6

Q ss_pred             chhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 043713            7 GGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAE   86 (190)
Q Consensus         7 ~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~   86 (190)
                      .+|+|||+|||++|. .+.+++|.+++..+.+++. +|+|+.||.||.+++++|.+++..+|++  .++.+.|||++|++
T Consensus         4 ~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~-~~~l~~~l~~P~i~~~~K~~vi~~~~~~--~~~~~~nFL~vLi~   79 (176)
T PRK08474          4 LIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFA-DEKFKEIISSPEISKEQKIEFLLSFVDN--ANAKFQNFIKLLAE   79 (176)
T ss_pred             hhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHC-ChhHHHHHhCCCCCHHHHHHHHHHHHhc--cCHHHHHHHHHHHH
Confidence            689999999999985 6899999999999999995 7999999999999999999999999985  58999999999999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEe
Q 043713           87 NGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVF  166 (190)
Q Consensus        87 ~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~vi  166 (190)
                      |+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.+++++|  ++|++++.+||  |||++|++||++|
T Consensus        80 n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g--~~v~l~~~vD~--IGG~ii~igd~v~  155 (176)
T PRK08474         80 NKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFN--AKIKLKQKKSD--YDGIKVEVDDLGV  155 (176)
T ss_pred             CChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhC--CeEEEEEEEcC--CCCEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999999998  79999999999  9999999999999


Q ss_pred             ehhHHHHHHHHHHHHcccc
Q 043713          167 DMSIKSRARQMERFLREPI  185 (190)
Q Consensus       167 D~Si~~~L~~l~~~l~~~~  185 (190)
                      |+|++  |++|+.+|.+++
T Consensus       156 D~s~~--l~~~~~~~~~~~  172 (176)
T PRK08474        156 EVSFS--KDRLKNQLIEYI  172 (176)
T ss_pred             Eeeee--HHHHHHHHHHHH
Confidence            99777  999999999886

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.4e-41  Score=267.68  Aligned_cols=172  Identities=24%  Similarity=0.308  Sum_probs=163.8

Q ss_pred             cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhc--cCCCHHHHHHHHH
Q 043713            6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQ--AKFSDVTKHFLVV   83 (190)
Q Consensus         6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~~~nfL~l   83 (190)
                      ..+|++||+|||++|.+.+.+++|.+++..+.+++.+   ++.||.||.+|.++|.++++.+|+.  .++++.+.|||++
T Consensus         4 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~---~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~v   80 (180)
T PRK13441          4 SAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYES---AKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNL   80 (180)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence            4799999999999999999999999999999999974   5789999999999999999999852  2589999999999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713           84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ  163 (190)
Q Consensus        84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d  163 (190)
                      |++|+|+.+++.|++.|..++++++|+..|+|+||.||+++++++|.+.+++++|  ++|++.++|||+||||+++++||
T Consensus        81 L~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~~--~~v~l~~~vD~sliGG~~i~ig~  158 (180)
T PRK13441         81 VFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYVL--RDPVFEETIDESLIAGAVVEFEG  158 (180)
T ss_pred             HHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHHC--CcceEEeeeChHHhCcEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999997  79999999999999999999999


Q ss_pred             EEeehhHHHHHHHHHHHHc
Q 043713          164 KVFDMSIKSRARQMERFLR  182 (190)
Q Consensus       164 ~viD~Si~~~L~~l~~~l~  182 (190)
                      ++||+|++++|++|++.|.
T Consensus       159 ~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        159 KRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             EEEeHhHHHHHHHHHHHHh
Confidence            9999999999999999883

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=9.8e-41  Score=262.94  Aligned_cols=176  Identities=31%  Similarity=0.504  Sum_probs=170.3

Q ss_pred             cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 043713            6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLA   85 (190)
Q Consensus         6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~   85 (190)
                      ..+|++||+|||++|.+.+.++.|.+++..+.+++.++|+|+.++.||.++.++|.++++++|++.++++.+.|||++|+
T Consensus         4 ~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~   83 (181)
T PRK13429          4 NAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLA   83 (181)
T ss_pred             chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999986449999999999999


Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEE
Q 043713           86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKV  165 (190)
Q Consensus        86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~v  165 (190)
                      +++|+.+++.|++.|.++++++.|+..++|+||.||+++++++|.+.|++++|  +++.+.++|||+++||+++++||++
T Consensus        84 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~~--~~~~~~~~vd~sligG~~i~~~~~~  161 (181)
T PRK13429         84 DRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMTG--KKVELDTAVDPSLIGGVVVKIGDKV  161 (181)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHHC--CEEEEEeeeChhhhCceEEEECCEE
Confidence            99999999999999999999999999999999999999999999999999997  8999999999999999999999999


Q ss_pred             eehhHHHHHHHHHHHHcc
Q 043713          166 FDMSIKSRARQMERFLRE  183 (190)
Q Consensus       166 iD~Si~~~L~~l~~~l~~  183 (190)
                      ||+|++++|+++++.|..
T Consensus       162 iD~Si~~~L~~l~~~l~~  179 (181)
T PRK13429        162 LDASVRTQLRRLKETLKK  179 (181)
T ss_pred             EehhHHHHHHHHHHHHhc
Confidence            999999999999999853

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=7.7e-41  Score=278.37  Aligned_cols=176  Identities=26%  Similarity=0.353  Sum_probs=170.6

Q ss_pred             cccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Q 043713            4 ALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVV   83 (190)
Q Consensus         4 ~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~l   83 (190)
                      ...++..-+..|||+.|.+++++++|.++|..+..++.++|+|+.+|.||.+++++|.+++.++|++ ++++.+.||+.+
T Consensus        95 l~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~-~~~~~~~nfl~~  173 (271)
T PRK13430         95 LADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG-KVTPVTERLAEQ  173 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHH
Confidence            3456788899999999999999999999999999999999999999999999999999999999986 799999999999


Q ss_pred             HHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECC
Q 043713           84 LAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQ  163 (190)
Q Consensus        84 l~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d  163 (190)
                      +++|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.|++++|  ++|.++++|||+||||++|++||
T Consensus       174 lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g--~~V~l~~~VDpsLIGGivI~vGd  251 (271)
T PRK13430        174 AVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYG--RPVHLNSEVDPSVLGGMRVQVGD  251 (271)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHC--CceEEEeeECccccCcEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999998  89999999999999999999999


Q ss_pred             EEeehhHHHHHHHHHHHHc
Q 043713          164 KVFDMSIKSRARQMERFLR  182 (190)
Q Consensus       164 ~viD~Si~~~L~~l~~~l~  182 (190)
                      ++||+|++++|++|++.|.
T Consensus       252 ~viD~Sv~~rL~~L~~~L~  270 (271)
T PRK13430        252 EVIDGSVAGRLERLRRRLA  270 (271)
T ss_pred             EEEehhHHHHHHHHHHHhc
Confidence            9999999999999999885

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=100.00  E-value=7.2e-40  Score=257.15  Aligned_cols=173  Identities=31%  Similarity=0.511  Sum_probs=167.7

Q ss_pred             ccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 043713            5 LFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVL   84 (190)
Q Consensus         5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll   84 (190)
                      ...++++||+|||++|.+.+.++.|++++.. .+++.++|+|+.||.||.++.++|.++++++|++  .++.+.|||.+|
T Consensus         4 ~~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l   80 (177)
T PRK05758          4 LSTVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVL   80 (177)
T ss_pred             chhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHH
Confidence            4578999999999999999999999999999 9999999999999999999999999999999986  499999999999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCE
Q 043713           85 AENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQK  164 (190)
Q Consensus        85 ~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~  164 (190)
                      ++++|+.++++|+.+|.+++++++++..++|+||.||+++++++|.+.+++++|  +++.+.+++||+++||+++++|++
T Consensus        81 ~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~~--~~v~l~~~vd~~ligG~~i~~~~~  158 (177)
T PRK05758         81 AENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRLG--RKVKLNEKVDPSLIGGVIIKVGDR  158 (177)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHHC--CeeEEEeeEChHHhCceEEEECCE
Confidence            999999999999999999999999999999999999999999999999999998  689999999999999999999999


Q ss_pred             EeehhHHHHHHHHHHHHc
Q 043713          165 VFDMSIKSRARQMERFLR  182 (190)
Q Consensus       165 viD~Si~~~L~~l~~~l~  182 (190)
                      ++|+|++++|+++++.|.
T Consensus       159 ~~d~Si~~~L~~l~~~l~  176 (177)
T PRK05758        159 VIDGSVRGKLERLKDALK  176 (177)
T ss_pred             EeehhHHHHHHHHHHHhc
Confidence            999999999999999875

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.4e-39  Score=287.23  Aligned_cols=174  Identities=25%  Similarity=0.335  Sum_probs=169.1

Q ss_pred             cchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHH
Q 043713            6 FGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA-KFSDVTKHFLVVL   84 (190)
Q Consensus         6 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~-~~~~~~~nfL~ll   84 (190)
                      .++.+.||+|||++|.+++.+++|.++|..+..++.++|+|+.||.||.+|+++|.+++.++|++. ++++.+.||+.++
T Consensus       269 ~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~~~~~~nfl~~l  348 (445)
T PRK13428        269 DALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGASTVNPVTVALLSQT  348 (445)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999999853 5899999999999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCE
Q 043713           85 AENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQK  164 (190)
Q Consensus        85 ~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~  164 (190)
                      ++++|+..++.|+..|.+++++++|+..|+||||.|||++|+++|.+.|+++||  ++|.++++||||||||++|++||.
T Consensus       349 v~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g--~~V~l~~~VDpsLiGGivI~vGd~  426 (445)
T PRK13428        349 VELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG--RPVSVQLHIDPELLGGLSIAVGDE  426 (445)
T ss_pred             HHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC--CceEEEeeeCchhhCceEEEECCE
Confidence            999999999999999999999999999999999999999999999999999998  899999999999999999999999


Q ss_pred             EeehhHHHHHHHHHHHH
Q 043713          165 VFDMSIKSRARQMERFL  181 (190)
Q Consensus       165 viD~Si~~~L~~l~~~l  181 (190)
                      +||+|++++|++++++|
T Consensus       427 viD~Sv~~rL~~l~~~l  443 (445)
T PRK13428        427 VIDGTLSSRLAAAEAQL  443 (445)
T ss_pred             EeehhHHHHHHHHHhhC
Confidence            99999999999999886

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=4.8e-45  Score=285.08  Aligned_cols=172  Identities=38%  Similarity=0.571  Sum_probs=130.8

Q ss_pred             hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 043713            8 GSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAEN   87 (190)
Q Consensus         8 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~   87 (190)
                      ||++||+|||++|.+++.++.|.+++..+.+++.++|+|+.||.+|.+|.++|.+++.++|++ ++++.+.|||++|+++
T Consensus         1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~   79 (172)
T PF00213_consen    1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN   79 (172)
T ss_dssp             HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999999999999999999986 7999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEee
Q 043713           88 GRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFD  167 (190)
Q Consensus        88 ~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD  167 (190)
                      +|+.++++|++.|.++++++.|+..|+|+||.||+++|+++|.+.+++++| ++++.+++.|||+||||++|++||++||
T Consensus        80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~~-~~~v~~~~~vD~sLigG~~i~~~~~~iD  158 (172)
T PF00213_consen   80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKYG-KKKVELNYKVDPSLIGGFIIEVGDKVID  158 (172)
T ss_dssp             T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTTT-T-------------------------TT
T ss_pred             CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHHC-CCeeeEEEEEccccCcEEEEEECCEEEe
Confidence            999999999999999999999999999999999999999999999999998 2489999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHH
Q 043713          168 MSIKSRARQMERFL  181 (190)
Q Consensus       168 ~Si~~~L~~l~~~l  181 (190)
                      +|++++|++++++|
T Consensus       159 ~Sv~~~L~~l~~~L  172 (172)
T PF00213_consen  159 ASVKSRLEQLKKEL  172 (172)
T ss_dssp             TTTTTTTTTT-TTT
T ss_pred             hhHHHHHHHHHhcC
Confidence            99999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK13431 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=9.3e-30  Score=199.41  Aligned_cols=168  Identities=21%  Similarity=0.238  Sum_probs=148.0

Q ss_pred             ccchhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHh----ccCCCHHHHH
Q 043713            5 LFGGSGNYASALYIAAVKT-NALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICT----QAKFSDVTKH   79 (190)
Q Consensus         5 ~~~va~~YA~AL~~~a~e~-~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~----~~~~~~~~~n   79 (190)
                      +..||+|||+|||++|.++ +.+++++++|..+.+++.+ ++|+.++.||.+  ++|.+++.++++    + ..++.+.|
T Consensus         4 ~g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~-~el~~il~~P~~--~~Kkk~l~~l~~~a~~~-~~~~~~~N   79 (180)
T PRK13431          4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKL-HKLNQVLAHVSL--KVKKEVVFEILEKITSI-KACSVLKP   79 (180)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc-HHHHHHHhCccH--HHHHHHHHHHHhhhccc-cccHHHHH
Confidence            4568999999999999999 9999999999999999987 799999999999  777777777776    4 58899999


Q ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEE
Q 043713           80 FLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVV  159 (190)
Q Consensus        80 fL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i  159 (190)
                      ||++|++|+|+.+||.|+..   +++++.|+..|+|+||.||+++++++|.+.|++++|  ++|.+...+++  .-|+++
T Consensus        80 Fl~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~g--~kV~L~~~~~~--~~gik~  152 (180)
T PRK13431         80 VMEVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARFN--APVEIAQDTWS--KKGVSL  152 (180)
T ss_pred             HHHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHHC--CeEEEEeeccC--CCceEE
Confidence            99999999999999999994   999999999999999999999999999999999998  78999998888  599999


Q ss_pred             EECCEEeehhHH--HHHHHHHHHHcc
Q 043713          160 EFGQKVFDMSIK--SRARQMERFLRE  183 (190)
Q Consensus       160 ~i~d~viD~Si~--~~L~~l~~~l~~  183 (190)
                      .++|.-++.|++  .-..++.++..|
T Consensus       153 ~v~~lg~ei~fs~~~~~~~~~~~~~~  178 (180)
T PRK13431        153 SVSSLDLEIGFSKEDILKKIEKQVIQ  178 (180)
T ss_pred             EEecCceEEEeeHHHHHHHHHHHHhh
Confidence            999876665554  444444444433

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.73  E-value=7.5e-17  Score=132.83  Aligned_cols=69  Identities=25%  Similarity=0.519  Sum_probs=66.5

Q ss_pred             eEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHHHHHHHHHHHH
Q 043713          111 VKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFL  181 (190)
Q Consensus       111 ~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~~~L~~l~~~l  181 (190)
                      ..++|+||.||+++++++|.+.|++.+|  +++.+++.+||+|||||+|++||++||+|++++|++|++.+
T Consensus       177 ~~~~v~sa~~l~~~~~~~i~~~l~~~~~--~~v~~~~~vdp~ligGi~l~~g~~~id~Si~~~L~~l~~~~  245 (246)
T TIGR03321       177 NPVLVRSAFELPEEQREQIRDTIRETLG--PEIRLRFQTEPDLIGGIELTAGGHKLAWSVDDYLESLEEDV  245 (246)
T ss_pred             CceEEEecCCCCHHHHHHHHHHHHHHHC--CCeeEEeeeCchhcCceEEEECCEEEechHHHHHHHHHhhc
Confidence            5599999999999999999999999998  79999999999999999999999999999999999999876

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=99.19  E-value=3.7e-10  Score=93.31  Aligned_cols=76  Identities=11%  Similarity=0.176  Sum_probs=70.3

Q ss_pred             cCceEEEEEeecCCCHHHHHHHHHHHHH-HhCCCceEEEEeeeCCCCcceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713          108 KGEVKVTVTSVIPLPPEEEKELKETLQE-TLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       108 ~~~~~~~V~sa~~L~~~~~~~l~~~l~~-~~~~~~~v~l~~~vD~sliGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      .+...+.|+||+||++++.++|.+.|.+ .+|  ..+.+.+.+||++|+|+.+++||..+.||+.++|+.|.+.+.+.+
T Consensus       173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~~--~~~~~~f~~~p~li~Giel~~~~~~i~ws~~~yl~~l~~~~~~~~  249 (250)
T PRK14474        173 TTPEMLRIRTSFELSQDLRAQILESLHQTHLI--PGTDIHFVTSPELICGIELKTEGYKIAWTLAEYLDALESQLTTVL  249 (250)
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhcC--CCCceeeecCcccccCeEEecCCceEeccHHHHHHHHHHHHHHHh
Confidence            3555699999999999999999999999 887  788999999999999999999999999999999999999988754

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=98.28  E-value=9.3e-06  Score=68.15  Aligned_cols=104  Identities=23%  Similarity=0.284  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-c
Q 043713           76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-L  154 (190)
Q Consensus        76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-i  154 (190)
                      ...+++..+.++++..+++.|-+.+..+.+    ...+.|+. .|-+-+........+...++  ....+....||++ -
T Consensus       175 iaekvi~~~~~~~~~~i~~li~~al~~l~~----~~~i~I~V-~p~d~~~l~~~~~~l~~~l~--~~~~i~I~~D~~l~~  247 (281)
T PRK06669        175 IAKKVIKEISENSKEIALALVKELLKEVKD----ATDITIRV-NPEDYEYVKEQKDELISLLD--NEEHLKIYEDDAISK  247 (281)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHcCc----CCcEEEEE-CHHHHHHHHHhHHHHHHhcC--CCCCeEEEECCCCCC
Confidence            455888888999998888888777776533    22344443 33333344444444555555  3445556677766 3


Q ss_pred             ceeEEEECCEEeehhHHHHHHHHHHHHccccc
Q 043713          155 GGLVVEFGQKVFDMSIKSRARQMERFLREPIH  186 (190)
Q Consensus       155 GGi~i~i~d~viD~Si~~~L~~l~~~l~~~~~  186 (190)
                      ||++|+.++-.+|+|+.+||+++++.|.+.+.
T Consensus       248 GgcvIet~~G~IDasi~tqLe~l~~~L~e~~~  279 (281)
T PRK06669        248 GGCVIETDFGNIDARIDTQLKQLKEKLLENLK  279 (281)
T ss_pred             CCeEEEcCCCeeeccHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999987653

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=97.10  E-value=0.0043  Score=51.93  Aligned_cols=62  Identities=16%  Similarity=0.237  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHc
Q 043713           25 ALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAEN   87 (190)
Q Consensus        25 ~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~   87 (190)
                      ...++.+||..+.+++..+|.++..|.+|..|++.|..++..+|++ ++++.+.+++..++.+
T Consensus        26 ~~~~~~~eL~~v~~~l~~~~~lrral~dp~~~~~~k~~L~~~l~~~-kv~~~~~~~~~~~v~~   87 (271)
T PRK13430         26 AAAQIGNELFAVVAVLDRERSLRRALTDPARPPEAKVELVKRLFGG-KVSPATLEVVSDAVRQ   87 (271)
T ss_pred             hHHHHHHHHHHHHHHHccchHHHHhcCCCCCChHHHHHHHHHHhcc-cCCHHHHHHHHHHHHh
Confidence            4568889999999999999999999999999999999999999987 7999999999888876

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=96.97  E-value=0.029  Score=44.48  Aligned_cols=66  Identities=24%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             eecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcccc
Q 043713          117 SVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE--FGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       117 sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      ++.|=+.+-.+.....+.+.+|   .+.+...-+++.+|||++.  -|+..+|.|+.++|+.++..+.-.+
T Consensus       125 ~~~~~D~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i  192 (198)
T PRK03963        125 RSNERTLKLIDSRLEEIRDELG---DVEIELGEPIETIGGVIVETKDGTIRVDNTFEARMERLESELRAKI  192 (198)
T ss_pred             EEccccHHHHHHHHHHHHHHhC---CeEEEECCCCCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHH
Confidence            3455444444444555566665   3444332345689999998  5668899999999999999886554

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.93  E-value=0.019  Score=45.20  Aligned_cols=105  Identities=18%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhccCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHH
Q 043713           57 AETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQET  136 (190)
Q Consensus        57 ~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~  136 (190)
                      ...|..++..+|..  ....+.+    +....+..++..++...        +.-.+.|+ ..|-+..-.+.+   + +.
T Consensus        75 L~~r~~~l~~v~~~--a~~kL~~----~~~~~y~~~l~~li~~~--------~~~~~~i~-~~~~D~~~~~~~---~-~~  135 (188)
T PRK02292         75 LNARKEVLEDVRNQ--VEDEIAS----LDGDKREELTKSLLDAA--------DADGVRVY-SRKDDEDLVKSL---L-SD  135 (188)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHh----cchhhHHHHHHHHHHhc--------CCCCeEEE-EccccHHHHHHH---H-Hh
Confidence            35667777777753  2222323    23334445555555543        22223333 334443333332   2 33


Q ss_pred             hCCCceEEEEeeeCCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcccc
Q 043713          137 LGQGKKVKVEQKVDPSILGGLVVE--FGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       137 ~~~~~~v~l~~~vD~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      ++   .+.+  .-+++++|||++.  -|+.++|.|+.++|+.+...+.-.+
T Consensus       136 ~~---~~~~--~~~~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i  181 (188)
T PRK02292        136 YD---GLEY--AGNIDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEI  181 (188)
T ss_pred             cc---cCee--CCCCCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHH
Confidence            33   1223  3468899999998  5668899999999999998876443

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=96.87  E-value=0.008  Score=49.80  Aligned_cols=104  Identities=18%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCc-ce
Q 043713           78 KHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSIL-GG  156 (190)
Q Consensus        78 ~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sli-GG  156 (190)
                      ..++.--++.++- .+..++..+...+..   .-.++|+. .|-+-+........+...++  ....+....||++- ||
T Consensus       147 eKIi~~el~~~~e-~i~~lv~~al~~l~~---~~~i~I~v-~p~d~~~v~~~~~~l~~~~~--~~~~i~i~~D~~l~~Gg  219 (255)
T TIGR03825       147 EKVIGVSLAEDKN-AFQALVRQVLSEVRE---FDEVSIYV-HPHWYERVAAQKDELQSILP--ACEHLAVYPDEKLPDGG  219 (255)
T ss_pred             HHHHHHHHccCHH-HHHHHHHHHHHhccC---CCcEEEEE-CHHHHHHHHHhHHHHHhhcC--CCCceEEEeCCCCCCCC
Confidence            3344444444443 345555555544432   22344443 23333334444455666665  34567777999996 99


Q ss_pred             eEEEECCEEeehhHHHHHHHHHHHHccccccC
Q 043713          157 LVVEFGQKVFDMSIKSRARQMERFLREPIHFG  188 (190)
Q Consensus       157 i~i~i~d~viD~Si~~~L~~l~~~l~~~~~~~  188 (190)
                      .+|..++=.+|+|+.+||+++++.|.+.+.-|
T Consensus       220 cvIEt~~G~iDasldtqLe~l~~~l~~~l~~g  251 (255)
T TIGR03825       220 CYVETNFGRIDASVDTQLEQLKEKLLEALKEG  251 (255)
T ss_pred             eEEEcCCceEEeeHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999998887655

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=96.23  E-value=0.14  Score=37.12  Aligned_cols=92  Identities=24%  Similarity=0.349  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-c
Q 043713           76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-L  154 (190)
Q Consensus        76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-i  154 (190)
                      ....++..-++.++-.++..|-+....   ...+.-.++|+    ++++..+.+.+.+.+...   ...+....||++ -
T Consensus        36 iae~vi~~~l~~~~~~i~~~i~~al~~---~~~~~~~v~I~----v~p~d~~~l~~~~~~~~~---~~~~~l~~D~~l~~  105 (128)
T PF02108_consen   36 IAEKVIGRELEEDPEAILNLIREALQE---LPRDEEKVTIR----VHPDDYEALEELLEDELP---ELGWELVADPSLAP  105 (128)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHH---hhccCCCeEEE----ECHHHHHHHHHHHHHHHh---hcCCEEEecCCCCC
Confidence            344445444444444444333333312   22223334444    367888888888875543   233377799997 5


Q ss_pred             ceeEEEECCEEeehhHHHHHHHH
Q 043713          155 GGLVVEFGQKVFDMSIKSRARQM  177 (190)
Q Consensus       155 GGi~i~i~d~viD~Si~~~L~~l  177 (190)
                      ||++|+.++-.+|+|+.+||+++
T Consensus       106 G~c~iet~~g~iD~~i~~ql~~l  128 (128)
T PF02108_consen  106 GDCRIETEDGIIDASIETQLEAL  128 (128)
T ss_pred             CCEEEEECCeeEEeCHHHHHhcC
Confidence            78999999999999999999864

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK06328 type III secretion system protein; Validated

Probab=96.11  E-value=0.063  Score=43.71  Aligned_cols=63  Identities=10%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHH---HHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713          121 LPPEEEKELKET---LQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       121 L~~~~~~~l~~~---l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      ++++..+.+.+.   +...++  ....+....||+| -||.+|+.+.-.+|+|+.+||+.+++.|.+.+
T Consensus       138 VnP~D~~~v~~~~~~l~~~~~--~~~~~~I~~D~~L~~GgCiIET~~G~VDasle~ql~~l~~al~~~l  204 (223)
T PRK06328        138 VNPKDLAIVEKSRPELKKIVE--YADSLIISPKADVTPGGCIIETEAGIINAQLDVQLAALEKAFSTIL  204 (223)
T ss_pred             ECHHHHHHHHHHHHHHHHhcc--CCCceEEEeCCCCCCCCeEEEeCCceEEecHHHHHHHHHHHHHHHH
Confidence            455556665554   445555  3456777799999 57799999999999999999999999987765

>PRK06937 type III secretion system protein; Reviewed

Probab=95.88  E-value=0.09  Score=42.05  Aligned_cols=71  Identities=18%  Similarity=0.364  Sum_probs=51.2

Q ss_pred             CceEEEEEeecCCCHHHHHHHHHHHHH---HhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHccc
Q 043713          109 GEVKVTVTSVIPLPPEEEKELKETLQE---TLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREP  184 (190)
Q Consensus       109 ~~~~~~V~sa~~L~~~~~~~l~~~l~~---~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~  184 (190)
                      +...+.|+    +++++.+.+.+.+..   .++  ..-.+....||+| -||.+|+.++=.+|+|+.+||+++++.|...
T Consensus       129 ~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~--~~~~l~i~~D~~L~~Ggc~iET~~G~vDasl~tql~~l~~al~~~  202 (204)
T PRK06937        129 NQKQVVVR----VNPDQAAAVREQIAKVLKDFP--EVGYLEVVADARLDQGGCILETEVGIIDASLDGQLEALEQAFHST  202 (204)
T ss_pred             cCCeEEEE----ECHHHHHHHHHHHHHHHHhCC--CCccEEEEeCCCCCCCCeEEecCCceEEccHHHHHHHHHHHHHHH
Confidence            33444444    355666666665444   333  2234677799997 5779999999999999999999999999765


Q ss_pred             c
Q 043713          185 I  185 (190)
Q Consensus       185 ~  185 (190)
                      +
T Consensus       203 ~  203 (204)
T PRK06937        203 I  203 (204)
T ss_pred             h
Confidence            4

>PRK09098 type III secretion system protein HrpB; Validated

Probab=95.69  E-value=0.11  Score=42.56  Aligned_cols=92  Identities=24%  Similarity=0.365  Sum_probs=61.2

Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHH---HhCCCceEEEEeeeCCCCc-ceeEEEE
Q 043713           86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQE---TLGQGKKVKVEQKVDPSIL-GGLVVEF  161 (190)
Q Consensus        86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~---~~~~~~~v~l~~~vD~sli-GGi~i~i  161 (190)
                      ..+.-.++..+.+....++.   +...++|.    ++++..+.+.+.+..   ..|  ....+....||+|- ||.+|+.
T Consensus       129 ~~d~~~ll~~v~~al~~~~~---~~~~v~Ir----V~P~D~~~v~~~~~~~~~~~g--~~~~l~Iv~Dp~L~~GgCviET  199 (233)
T PRK09098        129 GEDRAALFARAAQTLERVVD---GASYLTVR----VHPADLDAARAAFGAAAAAGG--RNVPVEVVGDPRLAPGACVCEW  199 (233)
T ss_pred             hcCHHHHHHHHHHHHHHHhc---cCCcEEEE----ECHHHHHHHHHHHHHHHHhcC--CCcceEEEeCCCCCCCCeEEEe
Confidence            33444455555544443333   22333443    344555555554433   344  56677788999995 7799999


Q ss_pred             CCEEeehhHHHHHHHHHHHHccccc
Q 043713          162 GQKVFDMSIKSRARQMERFLREPIH  186 (190)
Q Consensus       162 ~d~viD~Si~~~L~~l~~~l~~~~~  186 (190)
                      ++=.+|+|+.+||+.+++.|.+.+.
T Consensus       200 ~~G~IDasl~~ql~~L~~al~~~l~  224 (233)
T PRK09098        200 DFGVFDASLDTQLRALRRALARALA  224 (233)
T ss_pred             CCCeEecCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999987664

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=95.57  E-value=0.095  Score=46.95  Aligned_cols=63  Identities=11%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcC
Q 043713           25 ALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENG   88 (190)
Q Consensus        25 ~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll~~~~   88 (190)
                      .+..+-+||..+..++..++.++..|.+|.-|.+.|..++..+|++ ++++.+..++.-++...
T Consensus       198 ~~~~~~~el~~v~~~l~~~~~lrr~l~d~~~~~~~k~~l~~~l~~~-~~~~~~~~~~~~~~~~r  260 (445)
T PRK13428        198 ALTTLADELVSVAKLLDREPVLTKHLTEPAEDAAPKIRLVERLFSG-KVGAPTLEVLRTAVSQR  260 (445)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHcCCCCCChhhHHHHHHHHhCc-CCCHHHHHHHHHHHhCc
Confidence            4558889999999999999999999999999999999999999987 89999988888776543

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=95.08  E-value=0.063  Score=44.10  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHccc
Q 043713          121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREP  184 (190)
Q Consensus       121 L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~  184 (190)
                      ++++..+.+++.+.....   .-.+....||+| -||.+|..++-.+|+|+.+|++++.+.|.+.
T Consensus       182 v~P~D~~~v~~~~~~~~~---~~~~~l~~D~~l~~Ggc~iet~~g~vDa~l~~r~~~l~~~l~~~  243 (246)
T PRK05687        182 VNPDDLELVEQLLGAELS---LHGWRLLADPSLHRGGCRISAEEGDVDASLETRWQEVCRLLAPG  243 (246)
T ss_pred             ECHHHHHHHHHHHhhHHH---hCCeEEEeCCCcCCCCeEEEeCCCceeccHHHHHHHHHHHHhcc
Confidence            567788888888775543   224667799999 5889999999999999999999999998654

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=95.02  E-value=0.53  Score=37.53  Aligned_cols=51  Identities=22%  Similarity=0.333  Sum_probs=38.7

Q ss_pred             HHHHHHHHhCCCceEEEEeeeCCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcc
Q 043713          129 LKETLQETLGQGKKVKVEQKVDPSILGGLVVE--FGQKVFDMSIKSRARQMERFLRE  183 (190)
Q Consensus       129 l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~  183 (190)
                      +.+.+++.++  +.|.+..  +.+++|||+|+  =|+..+|+|.-+..+.|+..|+-
T Consensus       137 ~~~~~~~~l~--~gi~i~~--~~~~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~  189 (198)
T PRK01558        137 LRAALGNKLK--KGIELKP--FKGISKGFKIQQKDGSLYYDFSAEAIADILFSYLNP  189 (198)
T ss_pred             HHHHHHHHhc--CCeEEcc--cCCcccceEEEEcCCCeEEeCcHHHHHHHHHHHhcH
Confidence            4445555665  4566664  56699999999  57899999999999999888753

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.00  E-value=0.062  Score=42.17  Aligned_cols=41  Identities=34%  Similarity=0.579  Sum_probs=32.5

Q ss_pred             EEeeeCC----CCcceeEEEE--CCEEeehhHHHHHHHHHHHHcccc
Q 043713          145 VEQKVDP----SILGGLVVEF--GQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       145 l~~~vD~----sliGGi~i~i--~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      +....|+    +++|||++..  |+..+|+|+.++|+.+...+...+
T Consensus       147 ~~~~~~~~~~~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i  193 (198)
T PF01991_consen  147 VEVSVDSDYLIDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEI  193 (198)
T ss_dssp             EEEEE-T---BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHH
T ss_pred             ceeecCccccCCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHH
Confidence            3444664    8999999997  469999999999999988876543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=94.52  E-value=0.12  Score=42.45  Aligned_cols=60  Identities=23%  Similarity=0.238  Sum_probs=49.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHcccc
Q 043713          121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       121 L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      ++++..+.|.+.+....     -.+....||+| -||.+|..++-.+|+|+.+||+++...+.+.+
T Consensus       169 vnP~D~~~l~~~~~e~~-----~~~~l~~D~~l~~GgC~Iet~~g~iDa~ietRl~~~~~~l~~~l  229 (236)
T PRK13386        169 LNPEEFGRLKDLAPEKV-----QAWGLVADPSLSAGECRIVTDTSEADAGCEHRLDACMDAVKEHL  229 (236)
T ss_pred             ECHHHHHHHHHhhhccc-----cCeEEEeCCCcCCCCEEEEeCCceEeeCHHHHHHHHHHHHHHhc
Confidence            57778888887665432     24667799998 69999999999999999999999988887766

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.93  E-value=0.17  Score=41.48  Aligned_cols=67  Identities=22%  Similarity=0.386  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCC-cceeEEEECCEEeehhHHHHHHHHHHHHccccccC
Q 043713          121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSI-LGGLVVEFGQKVFDMSIKSRARQMERFLREPIHFG  188 (190)
Q Consensus       121 L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sl-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~~~~~~  188 (190)
                      .+.++.+.+.+.+.+..+.-... +...-||++ -||.+|..+.=.+|+|+.+||.++++.+.....++
T Consensus       164 VnP~d~e~i~~~~~~~~~~~~~~-l~l~~D~~l~~GgC~IeTe~G~iDasld~ql~~L~~~~~~~~~~~  231 (234)
T COG1317         164 VNPDDLEIIRQQLDEELSLLGWR-LELVADPALSPGGCIIETEFGIIDASLDTQLAALKRALLESLKVE  231 (234)
T ss_pred             ECHHHHHHHHHHHHHHHhhcchh-eeeccCCCCCCCCeEEEecCccccccHHHHHHHHHHHHHhhhccc
Confidence            35667777777665332210122 667789998 69999999999999999999999999998766554

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=92.17  E-value=5.3  Score=32.18  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHH-HHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CCEEeeh
Q 043713           92 NLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKE-LKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQKVFDM  168 (190)
Q Consensus        92 ~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~-l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d~viD~  168 (190)
                      ++..++..+..    ...-...+++-....+++..+. +...+.+.+- .+.|.+...     .|||+|+.  |+..+|+
T Consensus       114 lI~~~v~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~~-----~gG~~v~~~dg~~~vd~  183 (207)
T PRK01005        114 LIQALVQAIEA----QGISGNLTAYIGKHVSARAVNELLGKEVTKKLK-EKGVSVGSF-----VGGAQLKVEEKNWVLDL  183 (207)
T ss_pred             HHHHHHHHHhh----cccccccchhhhhcCCHHHHHHHHHHHHHHHHH-HcCeEEecc-----CCceEEEecCCeeEEeC
Confidence            45556666653    1111222233333335554444 4444455552 145666642     59999999  4578999


Q ss_pred             hHHHHHHHHHHHHc
Q 043713          169 SIKSRARQMERFLR  182 (190)
Q Consensus       169 Si~~~L~~l~~~l~  182 (190)
                      |..+.++.+...++
T Consensus       184 t~d~i~~~~~~~l~  197 (207)
T PRK01005        184 SSQTLLDLLTRYLQ  197 (207)
T ss_pred             cHHHHHHHHHHHhh
Confidence            99999998877764

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=90.33  E-value=1.4  Score=35.13  Aligned_cols=94  Identities=20%  Similarity=0.185  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcc
Q 043713           76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILG  155 (190)
Q Consensus        76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliG  155 (190)
                      .+..-|.-|....+...    +..+..-.......-.+.|++.. -+.+-   +.+.++. .    .+........+.+|
T Consensus        89 ~~~e~L~~i~~~~~~~~----l~~ll~~~~~~~~~~~~iV~~~e-~d~~~---v~~~~~~-~----~~~~~~~~~~d~~G  155 (194)
T COG1390          89 AVEEKLRNIASDPEYES----LQELLIEALEKLLGGELVVYLNE-KDKAL---VEQILRE-L----KIGVELGEGIDIIG  155 (194)
T ss_pred             HHHHHHHcCcCCcchHH----HHHHHHHHHHhcCCCCeEEEeCc-ccHHH---HHHHHhh-c----ccchhccccCCCcc
Confidence            45666777777777666    22222222233333334455443 23222   3333322 1    12222222367889


Q ss_pred             eeEEEE--CCEEeehhHHHHHHHHHHHHc
Q 043713          156 GLVVEF--GQKVFDMSIKSRARQMERFLR  182 (190)
Q Consensus       156 Gi~i~i--~d~viD~Si~~~L~~l~~~l~  182 (190)
                      |+++..  |...+|.|+.++|+.+...+.
T Consensus       156 Gvvv~~~dG~i~~dnt~~sil~~~~e~~~  184 (194)
T COG1390         156 GVVVESRDGKIRLDNTFESILERVLEELL  184 (194)
T ss_pred             eEEEEeCCCceeecCcHHHHHHHHHHHHH
Confidence            999999  558999999999999887764

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=89.50  E-value=5  Score=31.91  Aligned_cols=99  Identities=11%  Similarity=0.109  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHH---HHhCCCceEEEEeeeCCC
Q 043713           76 VTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQ---ETLGQGKKVKVEQKVDPS  152 (190)
Q Consensus        76 ~~~nfL~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~---~~~~~~~~v~l~~~vD~s  152 (190)
                      .....+.-.+.......+..++.+-...+   .+.-.+.|+..    ++..+.+.+.+.   ...+  ....+....||+
T Consensus        96 iarkvi~~~l~~~p~a~v~~~v~eal~~l---~~~~~v~I~v~----P~d~~~l~~~l~~~~~~~~--~~~~~~l~~D~~  166 (199)
T PRK06032         96 VARKIAGAALAAEPLAEITAAVRDCLRHL---VATPHLVVRVN----DALVEAARERLERLARESG--FEGRLVVLADPD  166 (199)
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHh---cCCCcEEEEEC----HHHHHHHHHHHHHHHHhcC--cCccEEEeeCCC
Confidence            34455555556666544444444444333   33334555433    333444444443   3444  355677779999


Q ss_pred             C-cceeEEEECCEEeehhHHHHHHHHHHHHcc
Q 043713          153 I-LGGLVVEFGQKVFDMSIKSRARQMERFLRE  183 (190)
Q Consensus       153 l-iGGi~i~i~d~viD~Si~~~L~~l~~~l~~  183 (190)
                      | -||.+|+.++-.+|.+..+...++...+..
T Consensus       167 L~~G~c~vet~~G~vd~d~~~~~~~I~~al~~  198 (199)
T PRK06032        167 MAPGDCRLEWADGGVVRDRAAIEARIEEAVGR  198 (199)
T ss_pred             CCCCCeEEEeCCCeEecCHHHHHHHHHHHhhc
Confidence            9 799999999999999999999999888764

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=86.49  E-value=0.81  Score=36.12  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             CCCCcceeEEE--ECCEEeehhHHHHHHHHHHHHcccc
Q 043713          150 DPSILGGLVVE--FGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       150 D~sliGGi~i~--i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      +++++|||++.  -|+..+|.|+...++++.-.++..+
T Consensus       142 ~~~~~GGvil~s~dG~I~ld~~l~~~~~~~~~~iR~~l  179 (185)
T PRK01194        142 DIDPYGGILAYSRDGKRELDLRLSSIFENILEDLKVYF  179 (185)
T ss_pred             CccccccEEEEeCCCcEEehhhHHHHHHHhHHHHHHHH
Confidence            57899999999  7889999999999999888776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
2wss_S	190	The Structure Of The Membrane Extrinsic Region Of B		2e-19
2bo5_A	120	Bovine Oligomycin Sensitivity Conferral Protein N-T		1e-13

>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 190

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEIL---DLVEASKKADTYFQFTKDLSVPAE 58
           P+ ++G  G YA+ALY AA K N LE+VE E+L    +++  K A +        SV   
Sbjct: 8   PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKXAASLLNPYVKRSV--- 64
Query: 59  TRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSV 118
            +V ++++   + KFS +T + + +LAENGRL N   +   F      H+GEV  TVT+ 
Sbjct: 65  -KVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRGEVPCTVTTA 123
Query: 119 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSILGGLVVEFGQKVFDMSIKSRARQME 178
                                          DPSI GG +V  G+K  D S K++ +++ 
Sbjct: 124 SALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIXGGXIVRIGEKYVDXSAKTKIQKLS 183
Query: 179 RFLRE 183
           R  RE
Sbjct: 184 RAXRE 188

>pdb|2BO5|A Chain A, Bovine Oligomycin Sensitivity Conferral Protein N-Terminal Domain Length = 120

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 2   PLALFGGSGNYASALYIAAVKTNALEKVESEIL---DLVEASKKADTYFQFTKDLSVPAE 58
           P+ ++G  G YA+ALY AA K N LE+VE E+L    +++  K A +        SV   
Sbjct: 8   PVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSV--- 64
Query: 59  TRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTV 115
            +V +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TV
Sbjct: 65  -KVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	3e-60
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	8e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A Length = 190

 Score =  185 bits (471), Expect = 3e-60
 Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 1/185 (0%)

Query: 1   VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETR 60
            P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+         +  V    +
Sbjct: 7   PPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPK-MAASLLNPYVKRSVK 65

Query: 61  VNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIP 120
           V +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+   
Sbjct: 66  VKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASA 125

Query: 121 LPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEFGQKVFDMSIKSRARQMERF 180
           L      ELK  L+  L +G+ +K+E K+DPSI+GG++V  G+K  DMS K++ +++ R 
Sbjct: 126 LDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRA 185

Query: 181 LREPI 185
           +RE +
Sbjct: 186 MREIL 190

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B Length = 134

 Score = 87.8 bits (218), Expect = 8e-23
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 12  YASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA 71
           YA A +  AV+  ++E+ +  +    E +K      +       P     + I       
Sbjct: 10  YAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMA-ELLSGALAPETLAESFIAVC--GE 66

Query: 72  KFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKE 131
           +  +  ++ + V+AENGRL  L  + ++F+ L    +   +V V S   L  ++  ++  
Sbjct: 67  QLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISA 126

Query: 132 TLQETLGQ 139
            +++ L +
Sbjct: 127 AMEKRLSR 134

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 24/205 (11%), Positives = 53/205 (25%), Gaps = 74/205 (36%)

Query: 35  DLVEASKKADTYFQFTKDLS---VPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLR 91
           D++   + A     F  +     V    +      I ++ +      H ++         
Sbjct: 20  DILSVFEDA-----FVDNFDCKDVQDMPK-----SILSKEEI----DHIIMSKDAVSGTL 65

Query: 92  NL--------DTIAKRFVE---------LTMAHKGEVK--------------VTVTSVIP 120
            L        + + ++FVE         L    K E +                      
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 121 LPP------EEEKELKETLQET-----------LGQGKKVKVEQKVDPSILGGLVVEFGQ 163
                    +   +L++ L E            LG GK               +  +   
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---KVQCKMDF 182

Query: 164 KVFDMSIKSRAR------QMERFLR 182
           K+F +++K+          +++ L 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLY 207

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	100.0
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	99.97
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	97.01
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.27
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	95.19
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	93.57

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=100.00  E-value=1.1e-48  Score=309.46  Aligned_cols=184  Identities=36%  Similarity=0.582  Sum_probs=154.0

Q ss_pred             CCccccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHH
Q 043713            1 VPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHF   80 (190)
Q Consensus         1 ~~~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nf   80 (190)
                      ||+.++++|+|||+|||++|.+++.++.|.++|..+.+++. +|+|+.+|.||.++.++|.+++.++|++.++++.+.||
T Consensus         7 ~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~-~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~~nf   85 (190)
T 2wss_S            7 PPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNL   85 (190)
T ss_dssp             CTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSS-STTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSSSHH
T ss_pred             CchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHC-CHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHHHHH
Confidence            68889999999999999999999999999999999999999 99999999999999999999999999853589999999


Q ss_pred             HHHHHHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEE
Q 043713           81 LVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVE  160 (190)
Q Consensus        81 L~ll~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~  160 (190)
                      |++|++|+|+.++++|++.|.+++++++|+..|+|+||.|||++|+++|.+.|++++|.|++|.++++|||+||||++|+
T Consensus        86 l~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~~v~  165 (190)
T 2wss_S           86 INLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVR  165 (190)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC-------------------
T ss_pred             HHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999973368999999999999999999


Q ss_pred             ECCEEeehhHHHHHHHHHHHHcccc
Q 043713          161 FGQKVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       161 i~d~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      +||++||+|++++|++|++.|.+.+
T Consensus       166 vgd~viD~Sv~~~L~~l~~~L~~~~  190 (190)
T 2wss_S          166 IGEKYVDMSAKTKIQKLSRAMREIL  190 (190)
T ss_dssp             ---CCTTTTTTTTTTTTCTTTTTC-
T ss_pred             ECCEEEehhHHHHHHHHHHHHhhcC
Confidence            9999999999999999999987753

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B

Probab=99.97  E-value=2.2e-31  Score=198.87  Aligned_cols=131  Identities=20%  Similarity=0.381  Sum_probs=98.0

Q ss_pred             ccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 043713            5 LFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVL   84 (190)
Q Consensus         5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll   84 (190)
                      +.++|+|||+|||++|.+++.++.|. ++..+...+.++|+|+.+|. |.++.++|.+++.++|++ ++++.+.|||++|
T Consensus         3 ~~~ia~rYA~AL~~~A~e~~~l~~~~-e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll   79 (134)
T 1abv_A            3 FITVARPYAKAAFDFAVEHQSVERWQ-DMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVM   79 (134)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence            56899999999999999999999995 77777888888999999999 999999999999999986 7999999999999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhC
Q 043713           85 AENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLG  138 (190)
Q Consensus        85 ~~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~  138 (190)
                      ++|+|+.++++|++.|.+++++++|++.|+|+||.|||++|+++|.+.|++++|
T Consensus        80 ~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~g  133 (134)
T 1abv_A           80 AENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLS  133 (134)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999986

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=97.01  E-value=0.0018  Score=49.65  Aligned_cols=92  Identities=21%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             HcCChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CC
Q 043713           86 ENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQ  163 (190)
Q Consensus        86 ~~~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d  163 (190)
                      ......++..++......+    +...+.|+ ..|-+.+..+.+...+.+.++ +..+.+  .-++...||++|..  |+
T Consensus        99 ~~~y~~~l~~li~e~~~~~----~~~~v~i~-v~~~D~~~v~~~~~~~~~~~~-~~~l~i--~~~~~~~GG~~i~~~~G~  170 (198)
T 2dm9_A           99 EDEYFESVKALLKEAIKEL----NEKKVRVM-SNEKTLGLIASRIEEIKSELG-DVSIEL--GETVDTMGGVIVETEDGR  170 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----TCSEEEEE-CCHHHHHHHHHTHHHHHHHCT-TCEEEE--CCCCCCSSEEEEEETTSS
T ss_pred             HHHHHHHHHHHHHHHHHHc----CCCCEEEE-ECHhHHHHHHHHHHHHHHHhc-CceEEE--CCCCCccCceEEEeCCCC
Confidence            3334455555555555443    33334443 334444455555555666664 234444  22567889999999  66


Q ss_pred             EEeehhHHHHHHHHHHHHcccc
Q 043713          164 KVFDMSIKSRARQMERFLREPI  185 (190)
Q Consensus       164 ~viD~Si~~~L~~l~~~l~~~~  185 (190)
                      ..+|+|+.++|+.+...+...+
T Consensus       171 i~id~tl~~rl~~~~~~l~~~i  192 (198)
T 2dm9_A          171 IRIDNTFEARMERFEGEIRSTI  192 (198)
T ss_dssp             CEEEEEHHHHHHHTHHHHHHHH
T ss_pred             EEEECcHHHHHHHHHHHhHHHH
Confidence            6999999999999999886544

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.27  E-value=0.086  Score=40.30  Aligned_cols=106  Identities=15%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHHcCceEEEEEeecCCCHHHHHHHHHHHHHHh
Q 043713           59 TRVNAINEICTQAKFSDVTKHFLVVLAEN-GRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIPLPPEEEKELKETLQETL  137 (190)
Q Consensus        59 ~K~~~l~~~~~~~~~~~~~~nfL~ll~~~-~r~~~l~~I~~~f~~l~~~~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~  137 (190)
                      .|.++++.+|..      +..=|.-+..+ ....+|...+.+..    ...+.-.+.+  ..|=+   ...+...+.. +
T Consensus        74 ar~eli~~v~~~------a~~~L~~~~~~~~Y~~~L~~Li~ea~----~~l~~~~~vv--~~~~D---~~~v~~~~~~-~  137 (187)
T 3v6i_A           74 ARGEVLEEVRRR------VREALEALPQKPEWPEVVRKLALEAL----EALPGAKALV--ANPED---LPHLEALARE-R  137 (187)
T ss_dssp             HHHHHHHHHHHH------HHHHHHHGGGSTTHHHHHHHHHHHHH----HHCTTCCEEE--ECTTT---HHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHH------HHHHHHhhhCCccHHHHHHHHHHHHH----HHcCCCCeEE--ECHHH---HHHHHHHHHh-c
Confidence            555666666642      22233333333 24444444444433    2222223322  44444   4444444444 3


Q ss_pred             CCCceEEEEeeeCCCCcceeEEEECC--EEeehhHHHHHHHHHHHHccccc
Q 043713          138 GQGKKVKVEQKVDPSILGGLVVEFGQ--KVFDMSIKSRARQMERFLREPIH  186 (190)
Q Consensus       138 ~~~~~v~l~~~vD~sliGGi~i~i~d--~viD~Si~~~L~~l~~~l~~~~~  186 (190)
                      |  -+    +..++++.|||++...|  ..+|+|+.++|+.+...+...++
T Consensus       138 ~--~~----~~~~~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~  182 (187)
T 3v6i_A          138 G--VE----LQAEPALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVA  182 (187)
T ss_dssp             T--CE----EEECTTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHH
T ss_pred             C--ee----eCCCCcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHH
Confidence            4  22    34688999999999843  69999999999999988865554

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=95.19  E-value=0.0043  Score=43.66  Aligned_cols=59  Identities=20%  Similarity=0.266  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CCEEeehhHHHHHHHHHHHHccccc
Q 043713          126 EKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQKVFDMSIKSRARQMERFLREPIH  186 (190)
Q Consensus       126 ~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d~viD~Si~~~L~~l~~~l~~~~~  186 (190)
                      ++.+.+.++++.|  +++.++..-..+.+||+++..  |.-.+|.|+.+||+.++.++...++
T Consensus        42 l~~~~~e~~~~~g--~~~~v~~~~~~~~~GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~  102 (106)
T 3lg8_A           42 LWNLEKEVENATK--KVTVLKKGEPVDIAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARIT  102 (106)
T ss_dssp             CTTTTTTHHHHSS--SCCCCCCCCCCSSSCBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC--CeEEEEeCCCccccccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHH
Confidence            3444455677776  666554322357899999998  6678999999999999999876553

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=93.57  E-value=0.35  Score=38.17  Aligned_cols=73  Identities=14%  Similarity=0.131  Sum_probs=45.3

Q ss_pred             HcCceEEEEEeecCCC----HHHHHHHHHHHHHHhCCCceEEEEeee------CCCCcceeEEEECC--EEeehhHHHHH
Q 043713          107 HKGEVKVTVTSVIPLP----PEEEKELKETLQETLGQGKKVKVEQKV------DPSILGGLVVEFGQ--KVFDMSIKSRA  174 (190)
Q Consensus       107 ~~~~~~~~V~sa~~L~----~~~~~~l~~~l~~~~~~~~~v~l~~~v------D~sliGGi~i~i~d--~viD~Si~~~L  174 (190)
                      ..+.-.+.|++ .|=+    +.....+...+..+.+  +.......+      +++..||++|..+|  -++|.|+-+||
T Consensus       131 ~l~e~~v~V~~-~~~D~~lv~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~GGvil~s~dGkI~vdNTle~RL  207 (233)
T 4efa_E          131 KLLEPKAIVKA-LERDVDLIESMKDDIMREYGEKAQ--RAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEINNTLEERL  207 (233)
T ss_dssp             HHCCSEEEEEE-CTTTHHHHTTSHHHHHHHHHHHTT--TSCCCEEEECSSCCCTTTCSSEEEEECTTSCCEEEEEHHHHH
T ss_pred             hcCCCcEEEEe-cHhhHHHHHHHHHHHHHHHHHHhC--CCCccccccccccCCcccccCceEEEECCCCEEEECCHHHHH
Confidence            33444555554 3333    3344555556666665  333222223      34578999999854  68999999999


Q ss_pred             HHHHHHHc
Q 043713          175 RQMERFLR  182 (190)
Q Consensus       175 ~~l~~~l~  182 (190)
                      +.+...+.
T Consensus       208 ~~~~~~~l  215 (233)
T 4efa_E          208 KLLSEEAL  215 (233)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1abva_	105	a.70.1.1 (A:) N-terminal domain of the delta subun	9e-13

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

 Score = 59.6 bits (144), Expect = 9e-13
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 12  YASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQA 71
           YA A +  AV+  ++E+ +  +    E +K        +  L+                 
Sbjct: 10  YAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLA---ESFIAVCGE 66

Query: 72  KFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKG 109
           +  +  ++ + V+AENGRL  L  + ++F+ L    + 
Sbjct: 67  QLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEA 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1abva_	105	N-terminal domain of the delta subunit of the F1F0	99.89
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	97.15

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.6e-23  Score=146.13  Aligned_cols=103  Identities=20%  Similarity=0.366  Sum_probs=91.3

Q ss_pred             ccchhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCHHHHHhhhCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Q 043713            5 LFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVL   84 (190)
Q Consensus         5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfL~ll   84 (190)
                      +..||+|||+|||++|.|++.+++|.+++..+..++ +++++..++.+|.++. +|...+..++.+ ++++.+.|||.+|
T Consensus         3 ~~TiArrYAkALf~lA~e~~~l~~~~~~l~~l~~l~-~~~~~~~~l~~p~~~~-~kk~~l~~~~~~-~~~~~~~nfl~lL   79 (105)
T d1abva_           3 FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVT-KNEQMAELLSGALAPE-TLAESFIAVCGE-QLDENGQNLIRVM   79 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TSHHHHHHHTCSSCHH-HHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-cCHHHHHHHhcccCcH-HHHHHHHHHHhc-ccCHHHHHHHHHH
Confidence            357999999999999999999999999999998877 5899999998887665 455666667765 7999999999999


Q ss_pred             HHcCChhhHHHHHHHHHHHHHHHcCc
Q 043713           85 AENGRLRNLDTIAKRFVELTMAHKGE  110 (190)
Q Consensus        85 ~~~~r~~~l~~I~~~f~~l~~~~~~~  110 (190)
                      ++|||+.++++|++.|.++++++.|+
T Consensus        80 ~~~~Rl~~l~~I~~~f~~L~~~~e~T  105 (105)
T d1abva_          80 AENGRLNALPDVLEQFIHLRAVSEAT  105 (105)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHHHHC
T ss_pred             HHCccHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999998763

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.00066  Score=46.80  Aligned_cols=75  Identities=27%  Similarity=0.316  Sum_probs=51.3

Q ss_pred             HcCceEEEEEeecCCCHHHHHHHHHHHHHHhCCCceEEEEeeeCCCCcceeEEEE--CCEEeehhHHHHHHHHHHHHccc
Q 043713          107 HKGEVKVTVTSVIPLPPEEEKELKETLQETLGQGKKVKVEQKVDPSILGGLVVEF--GQKVFDMSIKSRARQMERFLREP  184 (190)
Q Consensus       107 ~~~~~~~~V~sa~~L~~~~~~~l~~~l~~~~~~~~~v~l~~~vD~sliGGi~i~i--~d~viD~Si~~~L~~l~~~l~~~  184 (190)
                      ..+.-.+.|.... =+.+-.+.+...+.+.++   .+.+...-+++++|||++..  |...+|+|+.++|++....+...
T Consensus        36 ~l~~~ev~v~~~~-~D~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~  111 (118)
T d2dm9a1          36 ELNEKKVRVMSNE-KTLGLIASRIEEIKSELG---DVSIELGETVDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRST  111 (118)
T ss_dssp             HHTCSEEEEECCH-HHHHHHHHTHHHHHHHCT---TCEEEECCCCCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHH
T ss_pred             HhCCCcEEEEEch-hhHHHHHHHHHHHHHHcC---CceeEeCCCCccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHH
Confidence            3344445554432 244555555555555554   34455567889999999999  66899999999999998887654


Q ss_pred             c
Q 043713          185 I  185 (190)
Q Consensus       185 ~  185 (190)
                      +
T Consensus       112 i  112 (118)
T d2dm9a1         112 I  112 (118)
T ss_dssp             H
T ss_pred             H
Confidence            4