Citrus Sinensis ID: 043740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
Protein Sequence
MEVSKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRKGKGMNYSPCSSSDSEYYSSEEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MEVSKAEIEDQVKKILKLVRskdngitkesKRESELVGLINNFHDRYQSLYAHYNLlkgksgvrkgkgmnyspcsssdseyysseeieintsnfrnAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIarekgecpesrTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNwvtesnnsKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAklgkqggdkLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIdhqrtdcdYLKAEIA
Flexible Loop (DISEMBL)
mevskaeiedqvkkilklvrskdngitkeskreseLVGLINNFHDRYQSLYAHYNLLKgksgvrkgkgmnYSPCSSSDSEYYSSEEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVkvheshgnrasarikelegQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESlcnqkkkleeeidgkiedarqsreenDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQiarekgecpesrteLEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEeskqakrqilgsktslqiAERKMTELAEDFRKRLEDNIRVLFRRIQVaeqlhnetkdsyKKTLEQLEESnrllssegqsrkmRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWvtesnnskkslqQQVKSLVQKLDRMEEQESFLREEISnfeaklgkqggdklNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA
Low Complexity Region (SEG)
MEVSKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRKGKGMNyspcsssdseyysseeIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYltqlktleeelkkksevehkllkeREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTEsnnskkslqqqvkslvqklDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA
Disordered region (IsUnstruct)
***********************************LVGLINNFHDRYQSLYAHYNLLKG***************************************************************************************************************************************************************************VRGLVVQANVMQQDLVSLTS**NELQLLLKGKTKEISEYLTQ*****************************************************************************************************************************************************************************************************************************FRKRLEDNIRVLFRRIQVAE***********************************************************************************************************************************************************************************REAIRQLCVFIDHQRTDCDYL*****
Disordered Region (DISOPRED)
***SKAE**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FIDHQRTDCDYLKAEI*
Disordered Region (DISEMBL)
*********DQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRKGKGM***************EEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLD**************************LEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNW********************KLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA
Disordered Region (DISPRO)
**VSKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRK**************E*YSSEEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
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
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	718
255537723	774	Coiled-coil domain-containing protein, p	0.910	0.844	0.344	4e-84
224072134	712	predicted protein [Populus trichocarpa]	0.793	0.800	0.350	1e-82
356511454	1752	PREDICTED: uncharacterized protein LOC10	0.898	0.368	0.323	4e-67
224072140	1277	predicted protein [Populus trichocarpa]	0.696	0.391	0.328	5e-60
116831569	538	unknown [Arabidopsis thaliana]	0.731	0.975	0.331	7e-60
15238179	537	myosin heavy chain-like protein [Arabido	0.731	0.977	0.331	7e-60
359473905	1420	PREDICTED: uncharacterized protein LOC10	0.717	0.362	0.318	3e-58
224058377	1074	predicted protein [Populus trichocarpa]	0.696	0.465	0.327	7e-57
449505081	566	PREDICTED: uncharacterized protein LOC10	0.598	0.759	0.343	7e-55
449464096	566	PREDICTED: uncharacterized protein LOC10	0.598	0.759	0.341	1e-54

>gi|255537723|ref|XP_002509928.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223549827|gb|EEF51315.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 280/813 (34%), Positives = 432/813 (53%), Gaps = 159/813 (19%)

Query: 1   MEVSKAEIEDQVKKILKLVRS----KDNGITKESKRESELVGLINNFHDRYQSLYAHYNL 56
           M+ +K EIE +V +ILKL++S    K   ++++S R SEL+GL++ FH +YQ LY+ Y+ 
Sbjct: 16  MKENKQEIETKVARILKLIKSNGQDKKGKLSEDSMRISELIGLVHEFHKQYQFLYSQYDN 75

Query: 57  LKGKSGVRKGKGM----NYSPCSSSDSEYYSSEEIEINTSNFRNAHQEISIEQQGVALEV 112
           L+G+ G R  +G     N S   +SDSEYYSSE+IE      R+     SI+ +      
Sbjct: 76  LRGEIGKR-ARGRKEKENSSSTPTSDSEYYSSEDIENGVPINRHNKSSDSIKAE------ 128

Query: 113 SELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHG 172
                  + T + +A+ N +Y  A  K   AE   K  +++A ER+RE S LVKV E HG
Sbjct: 129 -------LDTEDFEASANLQYMTAFGKSPKAEITRKDQKNKAQERKREFSTLVKVQEVHG 181

Query: 173 NRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF---ATEAKQLGEKNIELHA------ 223
           ++ASA IKELEGQ++ L++EL SL+  K  LE Q      EAK+L E N +LH       
Sbjct: 182 SQASAEIKELEGQLTMLRMELESLHSLKNGLEVQIEEKENEAKRLVETNAQLHTRISELE 241

Query: 224 --------------------QEQATEQVRGLVVQANVMQ--------------------- 242
                               +   T +++ LV Q   +Q                     
Sbjct: 242 LMSEEKGNKISAMTVQMKKVENNLTSRIQVLVTQVKDLQLETDYLRAELAEMEGSKRYKK 301

Query: 243 ---------------QDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVE 287
                          Q+L SL  +K E QL L  K KE +  L+Q++ L+ E+  K+  E
Sbjct: 302 STQVKGLKDQFKIMQQELESLRREKTESQLQLDMKIKETNGNLSQIEALKNEIASKNGQE 361

Query: 288 HKLLKEREDFLMRVKDLE----SLCNQKKKLEEEIDGKIEDARQSREE----NDRLL--- 336
             +LKE+E FL ++ DL+    SL +Q  +LEE I  K ++  + REE     D++L   
Sbjct: 362 QGMLKEKEGFLAQMDDLKLEVNSLHDQNNELEEMIRSKNKEVDELREEKGGLQDKILELE 421

Query: 337 AKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK 396
            K+++ E+ELS   +K   ++NEA  QI+ALKA+V++LQQ+LD    +K +L+ Q  R K
Sbjct: 422 KKLAEREDELS--NKKYEHEDNEAYTQIVALKAQVNSLQQELDSSVAEKRKLEEQNERLK 479

Query: 397 GECPESRTELEQRNIKLTNKIANQQKIMKNQED---KIADQQKIIKNLEDKIADQQKIMK 453
            +  E+  ++E   + LT+KI +QQK +K ++D   K +++ K+IK+      D QK   
Sbjct: 480 QKSAENLMQVENEILNLTSKIEDQQKTLKEKDDTIKKFSEESKLIKH---HSLDSQKQPS 536

Query: 454 NQEDTVEKLTEESKQAK-RQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVA 512
           N +    +    +   K R +  +K +  + ERK+ ELAE F+ ++E++IR+L RRI+VA
Sbjct: 537 NTDSPKYRSMSATDSPKYRSMDSAKLNHNVFERKIDELAEKFQMKMENHIRLLSRRIRVA 596

Query: 513 EQLHNETKDSYKKTLEQLEESNRLL-----SSEGQSRKMRDM-LEPGNKALLAMESVVKK 566
           EQLH ET++S+KK LE+LE+ N+ L     + E +++KM+DM LE G+  L  ++ ++KK
Sbjct: 597 EQLHAETRESHKKVLEKLEQENKELHEKKAACEAEAKKMKDMLLESGSNMLTGLDIMMKK 656

Query: 567 L-EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREE 625
           + E NG    R+S++S++L  AKN +T     KK    +V+ L   ++  EE E   R  
Sbjct: 657 MDEENGKFLRRISRISNELQVAKNCLT----GKKD---EVEKLNYNMETEEESEGDRR-- 707

Query: 626 ISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAEL 685
             N  +KLG++  D                                  LE K+K++D  +
Sbjct: 708 --NAASKLGRKVED----------------------------------LEQKLKERDEGM 731

Query: 686 LSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA 718
            SLGEEKREAIRQLCV I++ R   D+LK  ++
Sbjct: 732 SSLGEEKREAIRQLCVLIEYHRHRYDHLKEAVS 764

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072134|ref|XP_002303630.1| predicted protein [Populus trichocarpa] gi|222841062|gb|EEE78609.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 243/694 (35%), Positives = 385/694 (55%), Gaps = 124/694 (17%)

Query: 107 GVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK 166
             +LEV+ L+++L S + E  AL ++Y    +++Q A+ +NK        + RE+SALVK
Sbjct: 51  AASLEVTGLKHRLTSATAENEALRTKYS---AELQEADTVNK--------QNRELSALVK 99

Query: 167 VHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF---ATEAKQLGEKN----- 218
           VHE H ++ASA+IKELEGQ++ LK E+ SL   K+D EAQ    A EAK L EKN     
Sbjct: 100 VHELHDSQASAQIKELEGQLATLKTEMDSLCTLKKDFEAQIENKAAEAKHLQEKNSQLLS 159

Query: 219 ----IELHAQEQA-----------------TEQVRGLVVQANVMQQDLVSLTSQ------ 251
               +EL ++E+                  T ++  L+ Q N +Q + VSL SQ      
Sbjct: 160 RVSELELMSKEKGDEISTIQKQLKDGEKNFTSRIEDLMAQVNNLQLETVSLRSQNAKLEA 219

Query: 252 -------------KNELQLL-----------------LKGKTKEISEYLTQLKTLEEELK 281
                        KN + +L                 L  KTKE+ E L + +TLE E+ 
Sbjct: 220 SKRKEVSAQAKGLKNRINILQKELDSFRGEKSQLEAQLNMKTKEVVENLLRTETLEGEIA 279

Query: 282 KKSEVEHKLLKEREDFLMRVKDLE----SLCNQKKKLEEEIDGKIEDARQSREENDRLLA 337
           KK+  E +LLKE+E FL++ +DLE    S+ NQK +LEE I  K ++  Q REE +R+ A
Sbjct: 280 KKAITEQELLKEKETFLVQREDLELEANSIRNQKNRLEELIRSKNQETDQLREEGERMHA 339

Query: 338 KISQTE-------NELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS 390
           +I + E       +  S  +++   +ENEAS QI+ALK++V +LQQ LD + ++K  L++
Sbjct: 340 RILELEGILLDRGDSFSPCQKEYESRENEASTQIMALKSQVFSLQQDLDSLLSEKSLLET 399

Query: 391 QIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQK 450
           Q  R + +  + + ++E     LT+KI  QQKI+K++ED I            K+ ++ K
Sbjct: 400 QNERLRRDVMQIQFQMENEVHNLTSKIEEQQKILKDKEDTIK-----------KLTEETK 448

Query: 451 IMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQ 510
           ++++      K         R +   +T+ Q  ERK+ ELA  F  ++E++IR+L++RI 
Sbjct: 449 VVRHHLLDSPKYRSLDSPKYRSLDSPRTNPQSLERKIEELAGSFHMKMENHIRILYQRIL 508

Query: 511 VAEQLHNETKDSYKKTLEQLEESN-----RLLSSEGQSRKMRDMLEPGNKALLAMESVVK 565
           VAEQ+H ETKD YKK  ++L++ N     +  + E + RK+R+ML    +     E+++K
Sbjct: 509 VAEQIHAETKDGYKKMKDRLDQENIELNEKTTAFEAELRKIREMLLDAGEVFSGAETMLK 568

Query: 566 KL-EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLRE 624
           K  E N  L++ + ++S++L  AK W+TE+ +  K L+  V SL  +L+  EE+E  LRE
Sbjct: 569 KFYEDNEILSDPICRISNELQFAKRWITETKDEIKKLKHNVDSLTLQLNGKEEKELLLRE 628

Query: 625 EISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAE 684
           ++   EAKL K+GG+KLN   ++S+LE+KV  LE+                 ++K ++  
Sbjct: 629 KVWKLEAKLSKEGGEKLN---SVSQLERKVVYLEQ-----------------QVKHKEDI 668

Query: 685 LLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA 718
            L + EEKREAIRQLC+ +D+ R+  D+L+  I+
Sbjct: 669 FLGVSEEKREAIRQLCILVDYHRSRYDHLREAIS 702

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511454|ref|XP_003524441.1| PREDICTED: uncharacterized protein LOC100812919 [Glycine max]

 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 249/770 (32%), Positives = 404/770 (52%), Gaps = 125/770 (16%)

Query: 4   SKAEIEDQVKKILKLVRSK-----DNGITKESKRESELVGLINNFHDRYQSLYAHYNLL- 57
           +K +IE+ + KIL+L+++K     D+   K S   +ELVGLI + + + QSLYA Y+ + 
Sbjct: 28  TKTDIENNISKILELIKNKSHSKEDDENHKHSTSGTELVGLIEDLYKKQQSLYAIYDCVI 87

Query: 58  --KGKSGVRKGKGMNYSPCSSSDSEYYSSEEIE----------INTSNFRNAHQE----- 100
               K   RK         S SDSEY+S EE++           + S      QE     
Sbjct: 88  EEFEKVVSRKRIKKVAMSSSDSDSEYFSPEEVDGIKRKSEKEYYSVSYLGTLKQESDRGD 147

Query: 101 -----ISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD 155
                  IE      +++ L  ++ S S++K  L  + +    +++     N  L D+  
Sbjct: 148 CTDEVPKIEATKFEEQLTSLAKEVESLSQQKKNLELQVESQTHEVKHLTLKNIELYDQVS 207

Query: 156 E------RQREISALVKVH----ESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEA 205
           E      R++ + + ++      ES  N A + +  L  +++ L+LE  SL  QK     
Sbjct: 208 ELELLLKREKGVVSDLQTQLNNSESQANLAKSNVANLMAKINELELETKSLQTQKN---- 263

Query: 206 QFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKE 265
                  Q+GEK I+    E  T Q   L+ Q N MQQ L  + ++K EL++ ++ + ++
Sbjct: 264 -------QMGEK-IKCDKNEALT-QREDLMEQLNAMQQRLDYIENEKRELEVEMESQREQ 314

Query: 266 ISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLC----NQKKKLEEEIDGK 321
           IS++L Q++ ++++L +   VEH +++E+E FL ++KDLE       NQK +LEE++   
Sbjct: 315 ISQHLIQIENVKDKLSEMRSVEHNMVEEKEGFLEKLKDLELNLEIQNNQKNELEEKLRAT 374

Query: 322 IEDARQSREEN----DR---LLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNL 374
             + +Q  +EN    DR   L   ++Q   E+S F R+    +N AS +++ALK K++ +
Sbjct: 375 SYEVKQLADENKALQDRNHELRTTMTQKGEEISIFMREHENHKNGASMEVMALKEKLNGM 434

Query: 375 QQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQ 434
           + +LD M+ +K +L+ Q  R + E  ES  ++E  N  L  +I +Q K            
Sbjct: 435 RLELDTMREQKNKLELQNERSQKEYAESLAKVETLNTNLATQIDDQAK------------ 482

Query: 435 QKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSL-QI-AERKMTELAE 492
                                  T+E++ EE+KQAK  I+ SK  L Q+ AERKM ELAE
Sbjct: 483 -----------------------TIERVNEENKQAK--IVYSKLKLIQVTAERKMNELAE 517

Query: 493 DFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLL----SSEGQSRKMRD 548
           +FR+++EDNIR+L +RI VAEQL+NE K S K T ++ EE N+ L    +S  + +  R 
Sbjct: 518 EFRRKMEDNIRLLHQRIHVAEQLNNENKYSCKVTKQRYEEENKNLGLKIASYKEEKTTRV 577

Query: 549 MLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSL 608
            +     AL  ++ VV+K+E   +  +R+++M  ++   K+W+ E N   K  ++ V  L
Sbjct: 578 PIGFELVALNRLDLVVEKVE---EHMSRMARMRCEVEFVKDWMRERNGEVKEQRENVDCL 634

Query: 609 VQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAEL 668
            + L++ EEQE  LRE +   EA + K+GG+KLN+ K +S+LEKKVG+L+K +KE     
Sbjct: 635 RELLNKKEEQELVLRENVWKLEANVSKEGGEKLNLRKQVSQLEKKVGKLDKILKE----- 689

Query: 669 LTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA 718
                       +D EL+SLGE+KREAIRQLC  ++  R   +YLK  +A
Sbjct: 690 ------------KDEELISLGEKKREAIRQLCFVVEFHRDRYNYLKDMVA 727

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072140|ref|XP_002303631.1| predicted protein [Populus trichocarpa] gi|222841063|gb|EEE78610.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 328/621 (52%), Gaps = 121/621 (19%)

Query: 157  RQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGE 216
            R  E+SAL+K  E + N + +R + L  QV  L  +  S++ QK +LE Q  +   +   
Sbjct: 701  RGDELSALMKKLEENYNESFSRTESLTVQVDTLLADFKSIHAQKAELEEQMVSRGNE--- 757

Query: 217  KNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTL 276
                      A+ +V GL+ Q N++QQ L SL SQK EL++ L+ KT EISEY   ++ L
Sbjct: 758  ----------ASTRVEGLIDQVNLLQQQLESLRSQKVELEVQLENKTLEISEYRILIENL 807

Query: 277  EEELKKKSEVEHKLLKEREDFLMRVKDLE----SLCNQKKKLEEEIDGKIEDARQSREEN 332
            +EE+  K+E + ++L E+E    ++ DLE    +LCNQK  L E+I  + ++  +  EE 
Sbjct: 808  KEEIVSKTEDQQRVLAEKESCSAQINDLELEVETLCNQKTDLGEQISTETKERERLGEEM 867

Query: 333  DRLLAKI-----SQTENE--LSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK 385
             RL  KI     +QTE E  LSA + +    E EASAQI+AL  +V+NL Q+LD +QT+K
Sbjct: 868  VRLQEKILEMEKTQTEREFELSALQERHTNGEIEASAQIMALTEQVNNLHQELDSLQTEK 927

Query: 386  GQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKI 445
             Q+  Q+ +EK E  E+ TE                  M+NQ+ ++  Q          I
Sbjct: 928  NQMQLQLEKEKEEFSENLTE------------------MENQKSELVSQ----------I 959

Query: 446  ADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRL------- 498
            A+ ++++  QE+  +KL EE KQ +      K SL +AERK+ ++AE+F+K L       
Sbjct: 960  AEHRRMLDEQEEAHKKLNEEHKQVEGWFQECKLSLAVAERKVQDMAEEFQKHLGSRDQMV 1019

Query: 499  -------ED--------------------NIRVLFR----RIQVAEQLHNETKDSYKKTL 527
                   ED                    NI V  R    +++V EQL  E +D+++K  
Sbjct: 1020 EQLEEMIEDLKRDLEVKGDELNTLVENVRNIEVKLRLSNQKLRVTEQLLTENEDTFRKAE 1079

Query: 528  EQLEESNRLL-------------SSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGD-L 573
            E+ ++  R+L             ++E     + D+ E  N +LL ++++  K E + +  
Sbjct: 1080 EKYQQEQRVLEERVAVLSGIITANNEAYHSMVADISEKVNNSLLGLDALTMKFEEDCNRY 1139

Query: 574  ANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKL 633
             N +  +S ++  AKNW  ++NN  + L+++V +LV +L  ++E ES L+E++   E K+
Sbjct: 1140 ENCILVVSKEILIAKNWFGDTNNENEKLRKEVGNLVVQLQDIKEHESALKEKVEQLEVKV 1199

Query: 634  GKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKR 693
             K+G +K N+ K +++LEKKV  LE  +KE                 +D  +L LGEEKR
Sbjct: 1200 SKEGVEKENLTKAINQLEKKVVALETMMKE-----------------KDEGILDLGEEKR 1242

Query: 694  EAIRQLCVFIDHQRTDCDYLK 714
            EAIRQLC++I++ ++  DYL+
Sbjct: 1243 EAIRQLCIWIEYHQSRYDYLR 1263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831569|gb|ABK28737.1| unknown [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 240/724 (33%), Positives = 368/724 (50%), Gaps = 199/724 (27%)

Query: 1   MEVSKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGK 60
           ME +K E+E +V  +LK +++K N I K +K+E  LVG++ + H + Q LY+ ++   G 
Sbjct: 1   MEEAKTEVEKKVSILLKFIQNK-NKIPKVTKKE--LVGIVEDLHKQCQLLYSVFDDF-GT 56

Query: 61  SGVRKGK-GMNYSPCSSSDSEYYSSEEIEINTSNFRNAHQEISIEQQGVALEVSELRNKL 119
            G RKGK G   S  SSSD +YYSSEE+EI+  N  +                       
Sbjct: 57  DG-RKGKLGTASSSRSSSDLDYYSSEEVEISADNVSD----------------------- 92

Query: 120 MSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI 179
                    L+S+Y   L K+Q  E     LR+E                          
Sbjct: 93  --------TLSSDYDVMLRKLQETE-----LRNE-------------------------- 113

Query: 180 KELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQAN 239
            +LE QVS LK E   L DQ  ++           G++N       +  E ++GL+ +  
Sbjct: 114 -DLERQVSNLKQETVFLRDQNMEVAGDIE------GKRN-------EDREHLKGLMTKL- 158

Query: 240 VMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLM 299
               +   L +QK EL++ L  KT ++SE   +LK LEEE +K+++ E K++KE+     
Sbjct: 159 ----EAALLCNQKRELEMELVKKTNQVSETQMRLKRLEEETEKRAKAEMKIVKEK----- 209

Query: 300 RVKDLESLCNQKKKLEEEIDGKIEDARQSREE-NDRLLAKISQTENELSAFRRKIAVQEN 358
                E+L N+ +KLE  +D      R+ R+E N+ + +KI  TEN+      KIAV   
Sbjct: 210 -----EALWNKVQKLEAGVDT----FRKKRKEFNEEMKSKI--TENQ--KLHTKIAV--- 253

Query: 359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIA 418
                              +D+++ K  +L+ Q+                          
Sbjct: 254 -------------------IDEIEDKSKKLEYQV-------------------------- 268

Query: 419 NQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKT 478
                 K QED       II+ L  +I DQ+K++K Q+D ++K +E+ K  KR   GSK 
Sbjct: 269 ------KEQED-------IIQRLSMEIKDQKKLLKEQKDAIDKFSEDQKLMKRWSFGSKL 315

Query: 479 SLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLE--QLEES--N 534
           +  + E+KM ELAEDFR ++ED+IR+L RRI VAEQ+H E+K SY KT +  Q EE+  N
Sbjct: 316 NTNLLEKKMEELAEDFRMKMEDHIRILHRRIHVAEQIHLESKSSYIKTRDNTQTEENRGN 375

Query: 535 RLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTES 594
           R + SE Q +K+++M+E G   L   E  +KKLE +G+L NR+++++ ++ SA+ WV E 
Sbjct: 376 RAV-SETQFKKIKEMVEQG---LAGPEMAIKKLEESGELGNRVTRLAKEIDSARKWVKEK 431

Query: 595 NNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV 654
           +N   +++ +V++L  KL+  E QES L+E++S  EAKL ++G +KL++ K M +++K  
Sbjct: 432 DN---NMKHEVETLEAKLECREAQESLLKEKLSKLEAKLAEEGTEKLSLSKAMRKIKK-- 486

Query: 655 GELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLK 714
                              LE  +K+++ ELLSLGE KREAIRQLCV +D+QR   D LK
Sbjct: 487 -------------------LEINVKEKEFELLSLGEGKREAIRQLCVLVDYQRCRYDDLK 527

Query: 715 AEIA 718
             I 
Sbjct: 528 TSIC 531

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238179|ref|NP_198993.1| myosin heavy chain-like protein [Arabidopsis thaliana] gi|10177362|dbj|BAB10653.1| unnamed protein product [Arabidopsis thaliana] gi|91806972|gb|ABE66213.1| myosin heavy chain-like [Arabidopsis thaliana] gi|332007345|gb|AED94728.1| myosin heavy chain-like protein [Arabidopsis thaliana]

 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 240/724 (33%), Positives = 368/724 (50%), Gaps = 199/724 (27%)

Query: 1   MEVSKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGK 60
           ME +K E+E +V  +LK +++K N I K +K+E  LVG++ + H + Q LY+ ++   G 
Sbjct: 1   MEEAKTEVEKKVSILLKFIQNK-NKIPKVTKKE--LVGIVEDLHKQCQLLYSVFDDF-GT 56

Query: 61  SGVRKGK-GMNYSPCSSSDSEYYSSEEIEINTSNFRNAHQEISIEQQGVALEVSELRNKL 119
            G RKGK G   S  SSSD +YYSSEE+EI+  N  +                       
Sbjct: 57  DG-RKGKLGTASSSRSSSDLDYYSSEEVEISADNVSD----------------------- 92

Query: 120 MSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI 179
                    L+S+Y   L K+Q  E     LR+E                          
Sbjct: 93  --------TLSSDYDVMLRKLQETE-----LRNE-------------------------- 113

Query: 180 KELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQAN 239
            +LE QVS LK E   L DQ  ++           G++N       +  E ++GL+ +  
Sbjct: 114 -DLERQVSNLKQETVFLRDQNMEVAGDIE------GKRN-------EDREHLKGLMTKL- 158

Query: 240 VMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLM 299
               +   L +QK EL++ L  KT ++SE   +LK LEEE +K+++ E K++KE+     
Sbjct: 159 ----EAALLCNQKRELEMELVKKTNQVSETQMRLKRLEEETEKRAKAEMKIVKEK----- 209

Query: 300 RVKDLESLCNQKKKLEEEIDGKIEDARQSREE-NDRLLAKISQTENELSAFRRKIAVQEN 358
                E+L N+ +KLE  +D      R+ R+E N+ + +KI  TEN+      KIAV   
Sbjct: 210 -----EALWNKVQKLEAGVDT----FRKKRKEFNEEMKSKI--TENQ--KLHTKIAV--- 253

Query: 359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIA 418
                              +D+++ K  +L+ Q+                          
Sbjct: 254 -------------------IDEIEDKSKKLEYQV-------------------------- 268

Query: 419 NQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKT 478
                 K QED       II+ L  +I DQ+K++K Q+D ++K +E+ K  KR   GSK 
Sbjct: 269 ------KEQED-------IIQRLSMEIKDQKKLLKEQKDAIDKFSEDQKLMKRWSFGSKL 315

Query: 479 SLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLE--QLEES--N 534
           +  + E+KM ELAEDFR ++ED+IR+L RRI VAEQ+H E+K SY KT +  Q EE+  N
Sbjct: 316 NTNLLEKKMEELAEDFRMKMEDHIRILHRRIHVAEQIHLESKSSYIKTRDNTQTEENRGN 375

Query: 535 RLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTES 594
           R + SE Q +K+++M+E G   L   E  +KKLE +G+L NR+++++ ++ SA+ WV E 
Sbjct: 376 RAV-SETQFKKIKEMVEQG---LAGPEMAIKKLEESGELGNRVTRLAKEIDSARKWVKEK 431

Query: 595 NNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV 654
           +N   +++ +V++L  KL+  E QES L+E++S  EAKL ++G +KL++ K M +++K  
Sbjct: 432 DN---NMKHEVETLEAKLECREAQESLLKEKLSKLEAKLAEEGTEKLSLSKAMRKIKK-- 486

Query: 655 GELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLK 714
                              LE  +K+++ ELLSLGE KREAIRQLCV +D+QR   D LK
Sbjct: 487 -------------------LEINVKEKEFELLSLGEGKREAIRQLCVLVDYQRCRYDDLK 527

Query: 715 AEIA 718
             I 
Sbjct: 528 TSIC 531

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473905|ref|XP_002271209.2| PREDICTED: uncharacterized protein LOC100255355 [Vitis vinifera]

 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 191/599 (31%), Positives = 335/599 (55%), Gaps = 84/599 (14%)

Query: 156  ERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLG 215
            ER+ E++ L+K  +   N + ++I +L  Q++ L+LE+ SL  QK +LE Q    +    
Sbjct: 861  EREEELAGLLKKFKDDENESLSKIADLTAQINNLQLEVDSLQAQKDELEKQVVQNS---- 916

Query: 216  EKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKT 275
                     E+A+ QV+GL  Q   ++ +L SL S K E++L+L+ KT+E SEYL Q+  
Sbjct: 917  ---------EEASVQVKGLTEQVTELKLELESLHSLKMEMELMLEKKTEENSEYLIQMGN 967

Query: 276  LEEELKKKSEVEHKLLKEREDFLMRVKDLE----SLCNQKKKLEEEIDGKIEDARQSREE 331
            L+EEL  K+  + ++L+E+E    +VKDLE    S+ N +  LEE++  K  +  Q REE
Sbjct: 968  LKEELVSKAADQQRILEEKESLTGKVKDLELEMDSIRNHRSTLEEQLSSKHHEYNQLREE 1027

Query: 332  NDRLLAK-------ISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTK 384
             + L  +       I++  +ELSA ++K    ENEASA+I+AL A+V++LQ ++D +  +
Sbjct: 1028 KEGLHVRSFDLEKTITERGDELSALQKKFEDTENEASARIVALTAEVNSLQVEMDSLHNE 1087

Query: 385  KGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQED---KIADQQKIIKNL 441
            K QL+ +I R K E  ES TELE + ++LT+K+   Q++++ QED   K+ ++ K  + L
Sbjct: 1088 KSQLELEIQRHKEESSESLTELENQRMELTSKVEEHQRMLREQEDAFNKLMEEYKQSEGL 1147

Query: 442  EDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGS--------KTSLQIAERKMTELAED 493
              +  +  ++ + + + +E+ +    ++K  I+          K  L++   +++ L E+
Sbjct: 1148 FHEFKNNLQVTERRLEEMEEESRIHLESKAHIIADFETMVEDLKRDLEVKGDELSTLVEE 1207

Query: 494  FRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLL-------------SSE 540
             R  +E  +R+  ++++V EQL +E ++SY++  E+ ++ NR L             ++E
Sbjct: 1208 VRN-IEVKLRLSNQKLRVTEQLLSEKEESYRRAEERFQQENRALEGKVAVLSEVITSNNE 1266

Query: 541  GQSRKMRDMLEPGNKALLAMESVVKKLEING-DLANRLSKMSDDLASAKNWVTESNNSKK 599
               R + D+ E  N  L  +ES V K E +  +  NR+S+++ ++  A+NWV  + + K+
Sbjct: 1267 SHVRMITDISETVNNTLAGLESTVGKFEEDSINFKNRISEIAGEVQVARNWVKMAKSEKE 1326

Query: 600  SLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEK 659
             L+ +  +LV++L   + +E                   +K ++IK +S+LEKKVGELEK
Sbjct: 1327 QLKSEASNLVEQLKYKKRKEEG-----------------EKESLIKAVSQLEKKVGELEK 1369

Query: 660  RIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA 718
                    ++ L         +D  +L LGE+KREAIRQLC++ID+ R  CDYL+  +A
Sbjct: 1370 --------MMNL---------KDEGILDLGEQKREAIRQLCIWIDYHRERCDYLREMLA 1411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058377|ref|XP_002299490.1| predicted protein [Populus trichocarpa] gi|222846748|gb|EEE84295.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 204/622 (32%), Positives = 318/622 (51%), Gaps = 122/622 (19%)

Query: 156  ERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLG 215
            ER  E+SAL K  E + N +S R + L  QV+ +  +L S+  QK +LE Q      +  
Sbjct: 498  ERGDELSALTKKLEENQNESS-RTEILTVQVNTMLADLESIRAQKEELEEQMVIRGNETS 556

Query: 216  EKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKT 275
                 +H        V GL+ Q NV++Q L  L SQK EL + L+ KT EISEYL Q++ 
Sbjct: 557  -----IH--------VEGLMDQVNVLEQQLEFLNSQKAELGVQLEKKTLEISEYLIQIEN 603

Query: 276  LEEELKKKSEVEHKLLKEREDFLMRVKDLE----SLCNQKKKLEEEIDGKIEDARQSREE 331
            L+EE+  K+  + + L E+E    ++ DLE    +LCNQ  +L E+I  +I++     EE
Sbjct: 604  LKEEIVSKTADQQRFLAEKESSTAQINDLELEVEALCNQNTELGEQISTEIKERELLGEE 663

Query: 332  NDRLLAKISQTEN-------ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTK 384
              RL  KI + E        E S+ + +    ENEASAQI+AL  +V NLQQ LD ++T+
Sbjct: 664  MVRLQEKILELEKTRAERDLEFSSLQERQTTGENEASAQIMALTEQVSNLQQGLDSLRTE 723

Query: 385  KGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDK 444
            K Q  SQ  +E+ E  E  TELE                  NQ+ +   Q          
Sbjct: 724  KNQTQSQFEKEREEFSEKLTELE------------------NQKSEFMSQ---------- 755

Query: 445  IADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKR------- 497
            IA+QQ+++  QE+  +KL EE KQ +      K SL++AERK+ ++AE+F+K        
Sbjct: 756  IAEQQRMLDEQEEARKKLNEEHKQVEGWFQECKVSLEVAERKIEDMAEEFQKNAGSKDQM 815

Query: 498  -------LED--------------------NIRVLFR----RIQVAEQLHNETKDSYKKT 526
                   +ED                    NI V  R    ++++ EQL  E ++S +K 
Sbjct: 816  VEQLEEMIEDLKRDLEVKGDEINTLVENVRNIEVKLRLSNQKLRITEQLLTENEESLRKA 875

Query: 527  LEQLEESNRLL-------------SSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGD- 572
             E+ ++  R+L             ++E   R + D+ +  N +LL ++++  K E + + 
Sbjct: 876  EERYQQEKRVLKERAAILSGIITANNEAYHRMVADISQKVNSSLLGLDALNMKFEEDCNR 935

Query: 573  LANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAK 632
              N +  +S ++  AKNW  E+NN K+ L+++V  LV +L   +E+ES L+E++   E K
Sbjct: 936  YENCILVVSKEIRIAKNWFMETNNEKEKLRKEVGDLVVQLQDTKERESALKEKVEQLEVK 995

Query: 633  LGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEK 692
            +  +G +K N+ K ++ LEKK                    LEN +K++D  +  LGEEK
Sbjct: 996  VRMEGAEKENLTKAVNHLEKKA-----------------VALENMLKEKDEGISDLGEEK 1038

Query: 693  REAIRQLCVFIDHQRTDCDYLK 714
            REAIRQLC++I++ R+  DYL+
Sbjct: 1039 REAIRQLCLWIEYHRSRHDYLR 1060

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505081|ref|XP_004162370.1| PREDICTED: uncharacterized protein LOC101225923 [Cucumis sativus]

 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 174/506 (34%), Positives = 273/506 (53%), Gaps = 76/506 (15%)

Query: 221 LHAQEQATEQVRGLV------VQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLK 274
            HAQ QA E  + +V       + + + ++L S+ SQK EL+     K KEISE +  + 
Sbjct: 112 FHAQIQADELEKQIVQKNEALAKVDFLHRELDSVRSQKRELE---NRKNKEISENMALIV 168

Query: 275 TLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDR 334
            L++E+ KK  +E K+L+++E  L R+KDLE+  +       EI+   E   + R EN  
Sbjct: 169 NLKQEISKKIGLEQKILEDKERVLDRIKDLETELDTLHYRRREIE---EQNIRMRSENQW 225

Query: 335 LLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394
           L  K S+ E  L++       +E EAS+Q +AL  +V NL+ K+D  Q +K +L+ ++ R
Sbjct: 226 LNTKNSELEMALTS-------KETEASSQTIALMEQVKNLKHKVDGSQAEKTKLEQEMER 278

Query: 395 EKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKN 454
            K E     +E+E  N +L +KI                             DQ++I+K 
Sbjct: 279 YKQEFSHKFSEMEAENNRLKSKIV----------------------------DQERILKE 310

Query: 455 QEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQ 514
           +++T+    E+ KQA+  +    +SL   ERKM ELAE+ R  LED IR+L +RI VAEQ
Sbjct: 311 KDETIITFNEKYKQARNCLPDVASSLVSTERKMEELAEELRSGLEDKIRLLSQRILVAEQ 370

Query: 515 LHNETKDSYKKTLEQLEESNR-----LLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEI 569
           LHNE+++S++   ++ E   R     +++ E +  K+ +M E G      M+ + +K E 
Sbjct: 371 LHNESRESFRTRNKRHEHEKRQFEQKIVNHEAELMKLGNMNEFG------MDRMARKFEE 424

Query: 570 -NGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISN 628
            +  L N +  ++ +L  AK WV   NN  K L+  +   V +++  EEQE  LRE++ N
Sbjct: 425 ESAKLLNHILWITKELTFAKYWVRTRNNELKQLKTNLTRFVAQMEEKEEQEFLLREKLWN 484

Query: 629 FEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSL 688
            EAK+ K+GG+KLN+I+T+ + EKK                 + ++EN +K++D E+  L
Sbjct: 485 LEAKISKEGGEKLNLIRTLGQFEKK-----------------MTKMENILKEKDEEVFRL 527

Query: 689 GEEKREAIRQLCVFIDHQRTDCDYLK 714
            EEKRE IRQLCV IDH R+  D LK
Sbjct: 528 AEEKREVIRQLCVVIDHHRSRYDQLK 553

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464096|ref|XP_004149765.1| PREDICTED: uncharacterized protein LOC101207367 [Cucumis sativus]

 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 274/506 (54%), Gaps = 76/506 (15%)

Query: 221 LHAQEQATEQVRGLV------VQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLK 274
            HAQ QA E  + +V       + + + ++L S+ SQK EL+     K KEISE +  + 
Sbjct: 112 FHAQIQADELEKQIVQKNEALAKVDFLHRELDSVRSQKRELE---NRKNKEISENMALIV 168

Query: 275 TLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDR 334
            L++E+ KK  +E K+L+++E  L R+K+LE+  +       EI+   E   + R EN  
Sbjct: 169 NLKQEISKKIGLEQKILEDKERVLDRIKELETELDTLHYRRREIE---EQNIRMRSENQW 225

Query: 335 LLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394
           L  K S+ E  L++       +E EAS+Q +AL  +V NL+ K+D  Q +K +L+ ++ R
Sbjct: 226 LNTKNSELEMALTS-------KETEASSQTIALMEQVKNLKHKVDGSQAEKTKLEQEMER 278

Query: 395 EKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKN 454
            K E     +E+E  N +L +KI                             DQ++I+K 
Sbjct: 279 YKQEFSHKFSEMEAENNRLKSKIV----------------------------DQERILKE 310

Query: 455 QEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQ 514
           +++T+    E+ KQA+  +    +SL   ERKM ELAE+ R  LED IR+L +RI VAEQ
Sbjct: 311 KDETIITFNEKYKQARNCLPDVASSLVSTERKMEELAEELRSGLEDKIRILSQRILVAEQ 370

Query: 515 LHNETKDSYKKTLEQLEESNR-----LLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEI 569
           LHNE+++S++   ++ E+  R     +++ E +  K+ +M E G      M+ + +K E 
Sbjct: 371 LHNESRESFRTRNKRHEQEKRQFEQKIVNHEAELMKLGNMNEFG------MDRMARKFEE 424

Query: 570 -NGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISN 628
            +  L N +  ++ +L  AK WV   NN  K L+  +   V +++  EEQE  LRE++ N
Sbjct: 425 ESAKLLNHILWITKELTFAKYWVRTRNNELKQLKTNLTRFVAQMEEKEEQEFLLREKLWN 484

Query: 629 FEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSL 688
            EAK+ K+GG+KLN+I+T+ + EKK                 + ++EN +K++D E+  L
Sbjct: 485 LEAKISKEGGEKLNLIRTLGQFEKK-----------------MTKMENILKEKDEEVFRL 527

Query: 689 GEEKREAIRQLCVFIDHQRTDCDYLK 714
            EEKRE IRQLCV IDH R+  D LK
Sbjct: 528 AEEKREVIRQLCVVIDHHRSRYDQLK 553

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	718
TAIR|locus:2014245	476	AT1G64320 "AT1G64320" [Arabido	0.525	0.792	0.323	8.8e-55
TAIR|locus:2152975	537	AT5G41780 [Arabidopsis thalian	0.494	0.661	0.354	2.3e-48
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.949	0.430	0.218	9.1e-25
TAIR|locus:2014240	555	AT1G64330 "AT1G64330" [Arabido	0.703	0.909	0.220	5e-21
ZFIN|ZDB-GENE-030131-5870	1964	myh9a "myosin, heavy polypepti	0.777	0.284	0.188	7.7e-21
UNIPROTKB|J9P2D7	1364	EEA1 "Uncharacterized protein"	0.880	0.463	0.220	7.8e-21
UNIPROTKB|F1PZD3	1411	EEA1 "Uncharacterized protein"	0.880	0.447	0.220	8.2e-21
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.916	0.441	0.203	1.5e-20
UNIPROTKB|P35748	1972	MYH11 "Myosin-11" [Oryctolagus	0.811	0.295	0.201	2.1e-20
MGI|MGI:102643	1972	Myh11 "myosin, heavy polypepti	0.806	0.293	0.205	3.5e-20

TAIR|locus:2014245 AT1G64320 "AT1G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
 Identities = 131/405 (32%), Positives = 230/405 (56%)

Query:   312 KKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKV 371
             K L ++++G   +    R + D   AK+ +   E++  + ++   + E   +   L  ++
Sbjct:    92 KGLMDQVNGMKHELESLRSQKDESEAKLEKKVEEVTETKMQLKSLKEETEEERNRLSEEI 151

Query:   372 DNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKI 431
             D L+ +   +  +  +LDS     K    +S  E+E  + KL  ++++Q+K++K Q+D  
Sbjct:   152 DQLKGENQMLHRRISELDSLHMEMK---TKSAHEMEDASKKLDTEVSDQKKLVKEQDD-- 206

Query:   432 ADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQI----AERKM 487
                  II+ L  KI DQQ+++K Q+DT++K  E+ KQ+KR   GS   L++     ERKM
Sbjct:   207 -----IIRRLSAKIKDQQRLLKEQKDTIDKFAEDQKQSKRWSFGSSRDLKLNPNALERKM 261

Query:   488 TELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEES--NR--LLSSEGQS 543
              ELAEDFR ++ED+IR+L+RRI VAEQ+H E+K+ Y KT + L+E+  NR  L+  E Q 
Sbjct:   262 EELAEDFRMKIEDHIRILYRRIHVAEQIHLESKNEYIKTRDMLKENKENRESLMFFETQF 321

Query:   544 RKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTEXXXXXXXXXX 603
              KM+D LE G       E+ +KKLE   ++ NR++++  ++ SAK WV+E          
Sbjct:   322 NKMKDALEKG---YTGSETAMKKLEEAEEVTNRVARIGKEMESAKLWVSEKKSEVETLTA 378

Query:   604 XXXXXXXXXDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKE 663
                      +  E QE+ L+E++S  E KL ++G +KL + K +S+ E ++ ELE ++K 
Sbjct:   379 KL-------ECSEAQETLLKEKLSKLEKKLAEEGTEKLKLAKVLSKFETRIKELEVKVKG 431

Query:   664 QDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRT 708
             ++ ELL+LGE + +  +Q   L+   +++   +++  + +D  +T
Sbjct:   432 REVELLSLGEEKREAIRQLCILVDYHQDRYNQLKKSILKVDDLKT 476

GO:0003674 "molecular_function" evidence=ND

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2152975 AT5G41780 [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 135/381 (35%), Positives = 219/381 (57%)

Query:   303 DLESLCNQKKKLEEEIDGKIEDA---RQSREENDRLLAKISQTENELSAFRRKIAVQENE 359
             D+E   N+ ++  + +  K+E A    Q RE    L+ K +Q        +R     E  
Sbjct:   139 DIEGKRNEDREHLKGLMTKLEAALLCNQKRELEMELVKKTNQVSETQMRLKRLEEETEKR 198

Query:   360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIAN 419
             A A++  +K K + L  K+  ++   G +D+   + K    E ++++ + N KL  KIA 
Sbjct:   199 AKAEMKIVKEK-EALWNKVQKLEA--G-VDTFRKKRKEFNEEMKSKITE-NQKLHTKIAV 253

Query:   420 QQKI---MKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGS 476
               +I    K  E ++ +Q+ II+ L  +I DQ+K++K Q+D ++K +E+ K  KR   GS
Sbjct:   254 IDEIEDKSKKLEYQVKEQEDIIQRLSMEIKDQKKLLKEQKDAIDKFSEDQKLMKRWSFGS 313

Query:   477 KTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLE--QLEES- 533
             K +  + E+KM ELAEDFR ++ED+IR+L RRI VAEQ+H E+K SY KT +  Q EE+ 
Sbjct:   314 KLNTNLLEKKMEELAEDFRMKMEDHIRILHRRIHVAEQIHLESKSSYIKTRDNTQTEENR 373

Query:   534 -NRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVT 592
              NR +S E Q +K+++M+E G   L   E  +KKLE +G+L NR+++++ ++ SA+ WV 
Sbjct:   374 GNRAVS-ETQFKKIKEMVEQG---LAGPEMAIKKLEESGELGNRVTRLAKEIDSARKWVK 429

Query:   593 EXXXXXXXXXXXXXXXXXXXDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEK 652
             E                   +  E QES L+E++S  EAKL ++G +KL++ K M    +
Sbjct:   430 EKDNNMKHEVETLEAKL---ECREAQESLLKEKLSKLEAKLAEEGTEKLSLSKAM----R 482

Query:   653 KVGELEKRIKEQDAELLTLGE 673
             K+ +LE  +KE++ ELL+LGE
Sbjct:   483 KIKKLEINVKEKEFELLSLGE 503

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 9.1e-25, P = 9.1e-25
 Identities = 162/741 (21%), Positives = 314/741 (42%)

Query:     1 MEVSKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGK 60
             +E      E+QVK++ + + S +      S++ SE+   I       Q L +    LKG 
Sbjct:   859 LEARVESAEEQVKELNQNLNSSEEEKKILSQQISEMSIKIKRAESTIQELSSESERLKGS 918

Query:    61 SGVRKGKGMNXXXXXXXXXXXXXXXXIEINTSNFRNAHQEISIEQQGVALEVSELRNKLM 120
                +  +  +                 E++T   R    ++   +  V LE+SE    L 
Sbjct:   919 HAEKDNELFSLRDIHETHQR-------ELSTQ-LRGLEAQLESSEHRV-LELSE---SLK 966

Query:   121 STSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREI----SALVKVHESHGNRAS 176
             +  EE   ++++  E   +++  + M + L  ++ + + ++    S L  + E   +++ 
Sbjct:   967 AAEEESRTMSTKISETSDELERTQIMVQELTADSSKLKEQLAEKESKLFLLTEKD-SKSQ 1025

Query:   177 ARIKELEGQVSRLKLELGSLNDQKRDLEAQFA---TEAKQLGEKNIELHAQ--E-QATEQ 230
              +IKELE  V+ L+LEL S+  +  DLE + A   T  +QL  +N E+ A+  E + T +
Sbjct:  1026 VQIKELEATVATLELELESVRARIIDLETEIASKTTVVEQLEAQNREMVARISELEKTME 1085

Query:   231 VRGLVVQANVMQ-QDLVSLTSQKNE-LQLLLKGKTKEISEYXXXXXXXXXXXXXXXXXXX 288
              RG  + A   + +D    +S   E L   + G   E+                      
Sbjct:  1086 ERGTELSALTQKLEDNDKQSSSSIETLTAEIDGLRAELDSMSVQKEEVEKQMVCKSEEAS 1145

Query:   289 XXXXXREDFLMRVKD-LESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELS 347
                   +D +  ++  + SL +Q+ +LE +++ K        EE    L++I+  + E+ 
Sbjct:  1146 VKIKRLDDEVNGLRQQVASLDSQRAELEIQLEKK-------SEEISEYLSQITNLKEEII 1198

Query:   348 AFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELE 407
                 K+ V E+    +I  L  K+   + +L+ +  ++ +LD ++  +K E  +   ++ 
Sbjct:  1199 ---NKVKVHESILE-EINGLSEKIKGRELELETLGKQRSELDEELRTKKEENVQMHDKIN 1254

Query:   408 QRN------IKLTNKIANQQ---KIMKNQEDKIADQQKIIKN-LEDKIADQQKIMKNQED 457
               +       +L N + N+    ++ K++ +   +++K  K+ L ++I D QK +  QE 
Sbjct:  1255 VASSEIMALTELINNLKNELDSLQVQKSETEAELEREKQEKSELSNQITDVQKALVEQEA 1314

Query:   458 TVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHN 517
                 L EE KQ       ++ +L     K+T   ++ ++ LE+  + +  R      +H 
Sbjct:  1315 AYNTLEEEHKQINELFKETEATLN----KVTVDYKEAQRLLEERGKEVTSRDSTIG-VHE 1369

Query:   518 ETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRL 577
             ET +S +  LE   +    L  +  + +++  L   N+ L   E V+ + E         
Sbjct:  1370 ETMESLRNELEMKGDEIETLMEKISNIEVK--LRLSNQKLRVTEQVLTEKE-EAFRKEEA 1426

Query:   578 SKMSDDLASAKNWVTEXXXXXXXXXXXXXXXXXXXDRMEEQESFLREEISNFEAKLGKQG 637
               + +     KN                       D  +     L E+   +E  + +  
Sbjct:  1427 KHLEEQALLEKNLTMTHETYRGMIKEIADKVNITVDGFQSMSEKLTEKQGRYEKTVMEAS 1486

Query:   638 GDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLG---ELENKIKQQDAE-LLSLGEEKR 693
                      + E   +  ++ K I+++D E+  LG     + K K+   E L+ LGEEKR
Sbjct:  1487 KILWTATNWVIERNHEKEKMNKEIEKKDEEIKKLGGKVREDEKEKEMMKETLMGLGEEKR 1546

Query:   694 EAIRQLCVFIDHQRTDCDYLK 714
             EAIRQLCV+IDH R+ C+YL+
Sbjct:  1547 EAIRQLCVWIDHHRSRCEYLE 1567

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

TAIR|locus:2014240 AT1G64330 "AT1G64330" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 5.0e-21, P = 5.0e-21
 Identities = 118/535 (22%), Positives = 235/535 (43%)

Query:     4 SKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGV 63
             +K EI+++VKKIL +V S D  I ++  +   +  L+ +F+  Y+SLY  Y+ L G+  +
Sbjct:    29 TKTEIDEKVKKILGIVESGD--IEEDESKRLVVAELVKDFYKEYESLYHQYDDLTGE--I 84

Query:    64 RK---GKGMNXXXXXXXXXXXXXXXXIEINTSNFRNAHQEISIEQQGVALEVSELRNKLM 120
             RK   GKG N                         N  + +  + +   LE+++L+ KL 
Sbjct:    85 RKKVHGKGENDSSSSSSSDSDSDKKSKR--NGRGENEIELLKKQMEDANLEIADLKMKLA 142

Query:   121 STSEEKAALNSEYQEALSKIQAAENMNKSLRDEADE---RQREISALVKVHESHGNRASA 177
             +T E K A+ SE+QE L K++ ++ +  +LR E ++     +E++  ++V     +  + 
Sbjct:   143 TTDEHKEAVESEHQEILKKLKESDEICGNLRVETEKLTSENKELNEKLEVAGETESDLNQ 202

Query:   178 RIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQ-EQATEQVRGLVV 236
             ++++++ +   L+ EL S   + +D E+      +  G+KN E  A+ E+  ++   L+ 
Sbjct:   203 KLEDVKKERDGLEAELAS---KAKDHESTLEEVNRLQGQKN-ETEAELEREKQEKPALLN 258

Query:   237 QANVMQQDLVSLTSQKNELQLLLKGKTKEISEYXXXXXXXXXXXXXXXXXXXXXXXXRED 296
             Q N +Q+ L+   +  N L    K       E                          E+
Sbjct:   259 QINDVQKALLEQEAAYNTLSQEHKQINGLFEEREATIKKLTDDYKQAREMLEEYMSKMEE 318

Query:   297 FLMRV----KDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRK 352
                R+    KD+ S  +    LEE ++    +  +  +E + L+ K+S  E +L    +K
Sbjct:   319 TERRMQETGKDVASRESAIVDLEETVESLRNEVERKGDEIESLMEKMSNIEVKLRLSNQK 378

Query:   353 IAVQEN---EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESR--TELE 407
             + V E    E   ++  ++AK    Q  L++      +    + +E  E  +S      +
Sbjct:   379 LRVTEQVLTEKEGELKRIEAKHLEEQALLEEKIATTHETYRGLIKEISERVDSTILNRFQ 438

Query:   408 QRNIKLTNKIANQQKIMKNQEDKIADQQKII---KNLEDKIA-DQQKIMKNQEDTVEKLT 463
               + KL  K  + +K +      +   +K +   K  +D++A +++++ K  E  V +  
Sbjct:   439 SLSEKLEEKHKSYEKTVVEATKMLLTAKKCVVEMKKEKDEMAKEKEEVEKKLEGQVREEE 498

Query:   464 EESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNE 518
             +E ++ K  +LG     + A R++    E  R R E    VL + +    Q  ++
Sbjct:   499 KEKEKLKETLLGLGEEKREAIRQLCIWIEHHRDRCEYLEEVLSKMVVARGQRRSQ 553

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

ZFIN|ZDB-GENE-030131-5870 myh9a "myosin, heavy polypeptide 9a, non-muscle" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 7.7e-21, P = 7.7e-21
 Identities = 114/606 (18%), Positives = 280/606 (46%)

Query:   110 LEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA---LVK 166
             L+V+    ++++  EE   +    Q+A  +++ +E   K L  E    Q ++ A   L +
Sbjct:   845 LQVTRQEEEMVAKEEELVKMKERQQQAEDQLKESEAKQKQLNAEKLALQEQLQAETELCQ 904

Query:   167 VHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQL----GEKNIELH 222
               E   +R +AR++E+E  +  L+  L    +++ +  AQF +E K++    G+   +L 
Sbjct:   905 EAEEMRSRLTARMQEMEEVLHELESRL----EEEEERVAQFQSEKKKMQQNIGDLEQQLD 960

Query:   223 AQEQATE--QVRGLVVQANV--MQQDLVSLTSQKNELQLLLKGKTKEISEYXXXXXXXXX 278
              +E A +  Q+  + + A +  +++DL+ +  Q  +L    K   + ISE+         
Sbjct:   961 EEEAARQKLQLEKVTMDAKLKKIEEDLMVIEDQNAKLSKEKKQMEERISEFTTNLAEEEE 1020

Query:   279 XXXXXXXXXXXXXXXREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAK 338
                            + + +  + DLE    +++K+ +E++   ++ R+   ++  L  +
Sbjct:  1021 KSKSLQKLKT-----KHETM--ITDLEDRLRKEEKMRQELE---KNRRKLEGDSTELHDQ 1070

Query:   339 ISQTENELSAFRRKIAVQENEASAQILALK--AKVDNLQQK-LDDMQTKKGQLDSQIARE 395
             I++ + +++  R ++A +E E  A +  ++  A + N  QK + +M+ +  +L   +  E
Sbjct:  1071 IAELQAQIAELRAQLAKKEEELQAALARIEEEAALKNAAQKSIREMEAQISELQEDLELE 1130

Query:   396 KGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQ 455
             K     +R + E++   L  ++   +  +++  D  A QQ++    E ++   +K ++++
Sbjct:  1131 KA----ARNKAEKQRRDLGEELEALKTELEDTLDSTAAQQELRAKRETEVTQLKKTLEDE 1186

Query:   456 EDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKR-LEDNIRVLFRRIQVAEQ 514
                 E++  E +Q   Q    + + Q+ + K ++ + D  K+ LE     L   ++   Q
Sbjct:  1187 ARAHEQMLSEVRQKHNQAF-EELNEQLEQSKRSKASVDKAKQALESERNELQIELKSLSQ 1245

Query:   515 LHNETKDSYKKTLEQLEESN-RLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDL 573
               N++++  KK   QL+E   +   SE Q  ++ D +      L +++  V K+E     
Sbjct:  1246 SKNDSENRRKKAESQLQELQVKHTESERQKHELLDKVSKMQAELESLQGTVTKVE----- 1300

Query:   574 ANRLSKMSDDLASAKNWVTEXXXXXXXXXXXXXXXXXXXDRMEEQESFLREEISNFEAKL 633
              ++  K + D ++ ++ + +                    ++E++++ L+E +   E   
Sbjct:  1301 -SKSIKAAKDCSAVESQLKDAQALLEEETRQKLAISTRLRQLEDEQNNLKEMLEEEEES- 1358

Query:   634 GKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKR 693
                   K N+ K +   + ++ E++K+I+++   L ++ + + K++++   +L   EE+ 
Sbjct:  1359 ------KKNVEKQLHTAQAQLAEMKKKIEQEAQSLESMEDGKKKLQREVESVLQQLEERN 1412

Query:   694 EAIRQL 699
              +  +L
Sbjct:  1413 ASYDKL 1418

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 7.8e-21, P = 7.8e-21
 Identities = 158/718 (22%), Positives = 317/718 (44%)

Query:     1 MEVSKAEIEDQVKKILKLVRSKDNGITK-ESKRE--SELVGLINNFHDRYQSLYAHYNLL 57
             ++ ++  ++D+ +++ K+    D   TK + K+E  S+L   +  + +++ SL      L
Sbjct:   622 LDTAQNALQDKQQELSKITTQLDQVTTKLQDKQEHCSQLESHLKEYKEKHLSLEQKTEEL 681

Query:    58 KGKSGVRKGKGMNXXXXXXXXXXXXXXXXIEINTSNFRNAHQEISIEQQ---GVALEVSE 114
             +G+  ++K                     +E+  S    A QE+ +++Q    + L V+E
Sbjct:   682 EGQ--IKK----------------LEADTLEVKGSK-EQALQELQLQRQLNTDLELRVTE 722

Query:   115 LRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQ---REISALVKVHESH 171
             L  +L     EK  ++S   +   K +A EN+ + L ++ +E++   REI  L +  +  
Sbjct:   723 LSKQL---EMEKEIVSSTKLDLQKKSEALENIKQMLTEQEEEKKLLKREIENLSQDAKMQ 779

Query:   172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQ- 230
                 + +I+    ++ ++K+E  +L  +    +  F+  ++ L     E   + Q  +  
Sbjct:   780 HKELNNKIQTAATELQKVKMEKETLMTELSATKENFSKVSESLKNSKSEFEKENQKGKAA 839

Query:   231 VRGLVVQANVMQQDLVSLTS----QKNELQLLLKGKTKEISEYXXXXXXXXXXXXXXXXX 286
             +  L      ++  L   T     ++NEL+  L+ K K+ S                   
Sbjct:   840 ILDLEKTCKELKHQLQVQTENTLKEQNELKKSLE-KEKQTSHQLKLELNSVQGQVVQAQN 898

Query:   287 XXXXXXXREDFLM-RVKDLESLCNQKKKLEEEIDGKIEDA-RQSREENDRLLAKISQTEN 344
                     E  L   + +L+ L  QKKK  E + G+++ A  Q  E   +L  + +Q   
Sbjct:   899 TLKQKEKEEQQLQGTINELKQLTEQKKKQIEALQGEVKTAISQKTELESKLQQQSTQAAQ 958

Query:   345 ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT 404
             EL+A + K++V +N         K++ DNL+Q   D   K+ +L +   R+  +  E + 
Sbjct:   959 ELTAEKEKMSVLQNTYE------KSQ-DNLKQLQSDFYGKESELLA--TRQDLKSVEEKL 1009

Query:   405 ELEQRN-IKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLT 463
              L Q + I   N+I NQ K++  QE K A        LE   A +++ +K Q  T++ + 
Sbjct:  1010 SLAQEDLISNRNQIGNQNKLI--QELKTAKAA-----LEQDSAKKEQQLKEQCKTLQDIQ 1062

Query:   464 EESKQAKRQILGSKTSL-QIAE------RKMTELAEDFRKRLEDNIRVLF-----RRIQV 511
             +E    ++++   K+ L +I E      +++ +L+E+F+   +++I+ +      +++ +
Sbjct:  1063 KEKSLKEKELANEKSKLAEIEEIKCRQEKEIAKLSEEFKSHKQESIKEVTNLKDAKQLLI 1122

Query:   512 AEQLHNETK-DSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPG-NKALLAMESVVKKLEI 569
              ++L  + + DS K TLEQ E+ N+ +  E Q +K  D L+    +    + S +K+ EI
Sbjct:  1123 QQKLELQGRVDSLKATLEQ-EKRNQQMLKE-QMKKEEDELKKEFTEKEAKLHSEIKEKEI 1180

Query:   570 NGDLANRLSKMSDDLASAKNWVTEXXXXXXXXXXXXXXXXXXXDRMEEQESFLREEISNF 629
                    + K  ++ A     +T                      +E+Q   LR EI+  
Sbjct:  1181 G------MKKHEENEAKLTMQITALNENLGTVKKEWQSSQRRVSELEKQTDDLRGEIAVL 1234

Query:   630 EAKLGKQGGDKLNII----KTMSELEK---KVGELEKRIKEQDAELLTLGELENKIKQ 680
             EA +     ++  ++    K   E+EK   KV EL++++    A +  LG  EN+  Q
Sbjct:  1235 EATVQNNQDERRALLERYLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGR-ENQSLQ 1291

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 8.2e-21, P = 8.2e-21
 Identities = 158/718 (22%), Positives = 317/718 (44%)

Query:     1 MEVSKAEIEDQVKKILKLVRSKDNGITK-ESKRE--SELVGLINNFHDRYQSLYAHYNLL 57
             ++ ++  ++D+ +++ K+    D   TK + K+E  S+L   +  + +++ SL      L
Sbjct:   669 LDTAQNALQDKQQELSKITTQLDQVTTKLQDKQEHCSQLESHLKEYKEKHLSLEQKTEEL 728

Query:    58 KGKSGVRKGKGMNXXXXXXXXXXXXXXXXIEINTSNFRNAHQEISIEQQ---GVALEVSE 114
             +G+  ++K                     +E+  S    A QE+ +++Q    + L V+E
Sbjct:   729 EGQ--IKK----------------LEADTLEVKGSK-EQALQELQLQRQLNTDLELRVTE 769

Query:   115 LRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQ---REISALVKVHESH 171
             L  +L     EK  ++S   +   K +A EN+ + L ++ +E++   REI  L +  +  
Sbjct:   770 LSKQL---EMEKEIVSSTKLDLQKKSEALENIKQMLTEQEEEKKLLKREIENLSQDAKMQ 826

Query:   172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQ- 230
                 + +I+    ++ ++K+E  +L  +    +  F+  ++ L     E   + Q  +  
Sbjct:   827 HKELNNKIQTAATELQKVKMEKETLMTELSATKENFSKVSESLKNSKSEFEKENQKGKAA 886

Query:   231 VRGLVVQANVMQQDLVSLTS----QKNELQLLLKGKTKEISEYXXXXXXXXXXXXXXXXX 286
             +  L      ++  L   T     ++NEL+  L+ K K+ S                   
Sbjct:   887 ILDLEKTCKELKHQLQVQTENTLKEQNELKKSLE-KEKQTSHQLKLELNSVQGQVVQAQN 945

Query:   287 XXXXXXXREDFLM-RVKDLESLCNQKKKLEEEIDGKIEDA-RQSREENDRLLAKISQTEN 344
                     E  L   + +L+ L  QKKK  E + G+++ A  Q  E   +L  + +Q   
Sbjct:   946 TLKQKEKEEQQLQGTINELKQLTEQKKKQIEALQGEVKTAISQKTELESKLQQQSTQAAQ 1005

Query:   345 ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT 404
             EL+A + K++V +N         K++ DNL+Q   D   K+ +L +   R+  +  E + 
Sbjct:  1006 ELTAEKEKMSVLQNTYE------KSQ-DNLKQLQSDFYGKESELLA--TRQDLKSVEEKL 1056

Query:   405 ELEQRN-IKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLT 463
              L Q + I   N+I NQ K++  QE K A        LE   A +++ +K Q  T++ + 
Sbjct:  1057 SLAQEDLISNRNQIGNQNKLI--QELKTAKAA-----LEQDSAKKEQQLKEQCKTLQDIQ 1109

Query:   464 EESKQAKRQILGSKTSL-QIAE------RKMTELAEDFRKRLEDNIRVLF-----RRIQV 511
             +E    ++++   K+ L +I E      +++ +L+E+F+   +++I+ +      +++ +
Sbjct:  1110 KEKSLKEKELANEKSKLAEIEEIKCRQEKEIAKLSEEFKSHKQESIKEVTNLKDAKQLLI 1169

Query:   512 AEQLHNETK-DSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPG-NKALLAMESVVKKLEI 569
              ++L  + + DS K TLEQ E+ N+ +  E Q +K  D L+    +    + S +K+ EI
Sbjct:  1170 QQKLELQGRVDSLKATLEQ-EKRNQQMLKE-QMKKEEDELKKEFTEKEAKLHSEIKEKEI 1227

Query:   570 NGDLANRLSKMSDDLASAKNWVTEXXXXXXXXXXXXXXXXXXXDRMEEQESFLREEISNF 629
                    + K  ++ A     +T                      +E+Q   LR EI+  
Sbjct:  1228 G------MKKHEENEAKLTMQITALNENLGTVKKEWQSSQRRVSELEKQTDDLRGEIAVL 1281

Query:   630 EAKLGKQGGDKLNII----KTMSELEK---KVGELEKRIKEQDAELLTLGELENKIKQ 680
             EA +     ++  ++    K   E+EK   KV EL++++    A +  LG  EN+  Q
Sbjct:  1282 EATVQNNQDERRALLERYLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGR-ENQSLQ 1338

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 280 (103.6 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 145/711 (20%), Positives = 309/711 (43%)

Query:     7 EIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRKG 66
             E+ D + KI   +  KDN I + SK+  +    I N       L    N +  +  + K 
Sbjct:   384 ELNDNISKISNQLNEKDNKIQELSKQSIDKQKEIENSTSSSDQLQLKLNDISNEL-LEK- 441

Query:    67 KGMNXXXXXXXXXXXXXXXXIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEK 126
               +N                +EIN       +Q IS + Q   L    + N   S+ E K
Sbjct:   442 --LNDINQLSNKLQDKENQILEINNKLNEKENQLISKDNQLNQL----IENNESSSDELK 495

Query:   127 AALNS---EYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELE 183
               LN    E QE   K+   +++   L+   +E Q +I+ L++ ++S  +    ++ +L 
Sbjct:   496 LKLNQLSDELQEKDEKLLNNQSVINELQSNLNENQNKINELIENNQSSSDELKLKLNQLS 555

Query:   184 GQVSRLKLELGSLNDQ--KRDLEA-QFATEAKQLGEKNIEL-HAQEQATEQVRGLVVQAN 239
              ++     +L SL     +RD +  Q      +  +K  EL    E ++++++  ++Q +
Sbjct:   556 DKLQEKDEKLKSLESSIIERDEKIDQLQDNLNEKQDKINELVENNESSSDELQSKLIQLS 615

Query:   240 --VMQQDLVSLTSQK--NELQLLLKGKTKEISEYXXXXXXXXXXXXXXXXXXXXXXXXRE 295
               + ++D   L +Q   NELQ  L     +I+E                         + 
Sbjct:   616 DQLQEKDEKLLNNQSIINELQSNLNENQNKINELIENNQSSSDELNSKLIKLSDELKDKN 675

Query:   296 DFLMRVKDLE-SLCNQKKKLEEEIDGK---IEDARQSREEND-RLLAKISQTENELSAFR 350
             +    V+ LE S+   + KL++ I      + + +    E +  +   I   ++ L   +
Sbjct:   676 E---NVRSLETSIIENQDKLDQLIQSNQVTVNELQSKLNEKEININQLIENNQSSLDELQ 732

Query:   351 RKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT-ELEQR 409
              K+  ++NE +  I   ++  D LQ KL++   +  +L S++  E  E  ES + EL+ +
Sbjct:   733 SKLNEKQNEINQLIENNQSSSDELQSKLNEKHQEISELQSKL-NELIENNESSSDELQSK 791

Query:   410 NIKLTNKIANQQKIMKNQEDKIAD-QQKII---KNLEDKIADQQKIMKNQEDTVEKLTEE 465
              I+L++++  + + +K+ +  I + Q+K++   K+ +D + + Q  +  +++ + +L E 
Sbjct:   792 LIQLSDELKEKDEKLKSLDSIIIENQEKLVQLTKSNQDSLDELQSKLNEKQNEINELIEN 851

Query:   466 SKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKK 525
             ++ +  ++   ++ L   + ++  L E+ +   ++    L  + Q   +L ++  +   K
Sbjct:   852 NQSSSNEL---QSKLNEKQNEINLLIENNQSSSDELQSKLNEKHQEINELQSKLNEKQNK 908

Query:   526 TLEQLEESNRLLSSEGQSR--KMRDMLEPGNKALLAMES-VVKKLEINGDLANRLSKMSD 582
              + +L E+N   S E QS+  ++ D L+     L + ES ++++ E    L ++L++  +
Sbjct:   909 -INELVENNESSSDELQSKLIQLSDQLQEKENQLKSFESSIIERDEKLNQLQSKLNEKQN 967

Query:   583 DLASAKNWVTEXXXXXXXXXXXXXXXXXXX--DRMEEQESFLREEISNFEAKLGK--QGG 638
             ++    + +TE                       +E  +S L E  S    KL +  +  
Sbjct:   968 EI----DQITENNQSSLDELQSNLNEKQNEINQLIENNQSSLDELQSKLNEKLNEINEKD 1023

Query:   639 DKLN-IIKTMSELEK----KVGELEKRIKEQDAELLTLGELENKIKQQDAE 684
             +K+N +I+T   L K    K   LE+ ++E++ ++L L      +  Q +E
Sbjct:  1024 NKINELIQTNESLSKDQQSKFENLEQELEEKNNKILDLNSQIIDVNHQFSE 1074

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|P35748 MYH11 "Myosin-11" [Oryctolagus cuniculus (taxid:9986)]

 Score = 280 (103.6 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 129/639 (20%), Positives = 284/639 (44%)

Query:   110 LEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVH- 168
             L+V+    ++ +  +E   +    Q+A S++Q  +  +  L +E +  Q ++ A  +++ 
Sbjct:   845 LQVTRQEEEMQAKEDELQKIKERQQKAESELQELQQKHTQLSEEKNLLQEQLQAETELYA 904

Query:   169 --ESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQ 226
               E    R +A+ +ELE  +  ++  L    D+ + L+A+    A+Q+ +   +L  +E 
Sbjct:   905 EAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEA 964

Query:   227 ATE--QVRGLVVQANV--MQQDLVSLTSQKNELQLLLKGKTKEISEYXXXXXXXXXXXXX 282
             A +  Q+  +  +A +  ++ D++ +  Q N+L    K   + IS+              
Sbjct:   965 ARQKLQLEKVTAEAKIKKLEDDILVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKN 1024

Query:   283 XXXXXXXXXXXREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKI--- 339
                          +  +R+K  E    + +KL+ ++DG+  D  +   +    +A++   
Sbjct:  1025 LTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKMDGEASDLHEQIADLQAQIAELKMQ 1084

Query:   340 -SQTENELSAFRRKI---AVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395
              ++ E EL A   ++     Q+N A  +I  L+  + +LQ+ LD  +  + + + Q  R+
Sbjct:  1085 LAKKEEELQAALARLEDETSQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQ-KRD 1143

Query:   396 KGECPES-RTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKII-KNLEDKIADQQKIMK 453
              GE  E+ +TELE   +  T   A QQ++   +E ++   +K + +      A  Q++ +
Sbjct:  1144 LGEELEALKTELED-TLDTT---ATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQ 1199

Query:   454 NQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFR-------------KRLED 500
                  VE+LTE+ +Q KR       + Q  E++  +LA + R             K+LE 
Sbjct:  1200 KHTQVVEELTEQLEQFKRAKANLDKTKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEV 1259

Query:   501 NIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLS-SEGQSRKM-RDMLEPGNKALL 558
              ++ L  +    E+   E  D   K   ++E    +LS +EG++ K+ +++   G++   
Sbjct:  1260 QLQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLSEAEGKAIKLAKEVASLGSQLQD 1319

Query:   559 AMESVVKKLEINGDLANRLSKMSDDLASAKNWVTEXXXXXXXXXXXXXXXXXXXDRMEEQ 618
               E + ++     +++ +L ++ D+  S +  + E                     +E  
Sbjct:  1320 TQELLQEETRQKLNVSTKLRQLEDERNSLQEQLDEEMEAK--------------QNLERH 1365

Query:   619 ESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKI 678
              S L  ++S+ + KL        ++ +     +K++  L ++ +E+ A    L + +N++
Sbjct:  1366 ISTLNIQLSDSKKKLQDFASTVESLEEGKKRFQKEIESLTQQYEEKAAAYDKLEKTKNRL 1425

Query:   679 KQQ-DAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAE 716
             +Q+ D  ++ L  +     RQL   ++ ++   D L AE
Sbjct:  1426 QQELDDLVVDLDNQ-----RQLVSNLEKKQKKFDQLLAE 1459

GO:0006939 "smooth muscle contraction" evidence=IDA

GO:0008307 "structural constituent of muscle" evidence=ISS

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IDA

GO:0048251 "elastic fiber assembly" evidence=ISS

GO:0048739 "cardiac muscle fiber development" evidence=ISS

MGI|MGI:102643 Myh11 "myosin, heavy polypeptide 11, smooth muscle" [Mus musculus (taxid:10090)]

 Score = 278 (102.9 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 132/643 (20%), Positives = 288/643 (44%)

Query:   110 LEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVH- 168
             L+V+    ++ +  EE   +    Q+A ++++  E  +  L +E    Q ++ A  +++ 
Sbjct:   845 LQVTRQEEEMQAKEEEMQKITERQQKAETELKELEQKHTQLAEEKTLLQEQLQAETELYA 904

Query:   169 ESHGNRA--SARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQ 226
             ES   R   +A+ +ELE  +  ++  L    D+++ L+A+    A+Q+ +   +L  +E 
Sbjct:   905 ESEEMRVRLAAKKQELEEILHEMEARLEEEEDRRQQLQAERKKMAQQMLDLEEQLEEEEA 964

Query:   227 ATE--QVRGLVVQANV--MQQDLVSLTSQKNELQLLLKGKTKEISEYXXXXXXXXXXXXX 282
             A +  Q+  +  +A +  ++ D++ +  Q ++L    K   + +S+              
Sbjct:   965 ARQKLQLEKVTAEAKIKKLEDDILVMDDQNSKLSKERKLLEERVSDLTTNLAEEEEKAKN 1024

Query:   283 XXXXXXXXXXXREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKI--- 339
                          +  +R+K  E    + +KL+ +++G   D  +   +    +A++   
Sbjct:  1025 LTKLKSKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQ 1084

Query:   340 -SQTENELSAFRRKI---AVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395
              ++ E EL A   ++     Q+N A  +I  L+  + +LQ+ LD  +  + + + Q  R+
Sbjct:  1085 LAKKEEELQAALARLDEEIAQKNNALKKIRELEGHISDLQEDLDSERAARNKAEKQ-KRD 1143

Query:   396 KGECPES-RTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKII-KNLEDKIADQQKIMK 453
              GE  E+ +TELE       +  A QQ++   +E ++   +K + +      A  Q++ +
Sbjct:  1144 LGEELEALKTELEDT----LDSTATQQELRAKREQEVTVLKKALDEETRSHEAQVQEMRQ 1199

Query:   454 NQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFR-------------KRLED 500
                  VE+LTE+ +Q KR       S Q  E++  +LA + R             K+LE 
Sbjct:  1200 KHTQAVEELTEQLEQFKRAKANLDKSKQTLEKENADLAGELRVLGQAKQEVEHKKKKLEV 1259

Query:   501 NIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLS-SEGQSRKM-RDMLEPGNKALL 558
              ++ L  +    E+   E  D   K   ++E    +L+ +EG++ K+ +D+   G++   
Sbjct:  1260 QLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLGSQLQD 1319

Query:   559 AMESVVKKLEINGDLANRLSKMSDDLASAKNWVTEXXXXXXXXXXXXXXXXXXXDRMEEQ 618
               E + ++     +++ +L ++ D+  S ++ + E                     +E  
Sbjct:  1320 TQELLQEETRQKLNVSTKLRQLEDERNSLQDQLDEEMEAK--------------QNLERH 1365

Query:   619 ESFLREEISNFEAKLGKQGGDKLNIIKTMSE----LEKKVGELEKRIKEQDAELLTLGEL 674
              S L  ++S+ + KL     D  + I+ M E    L+K++  L ++ +E+ A    L + 
Sbjct:  1366 VSTLNIQLSDSKKKLQ----DFASTIEVMEEGKKRLQKEMEGLSQQYEEKAAAYDKLEKT 1421

Query:   675 ENKIKQQ-DAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAE 716
             +N+++Q+ D  ++ L  +     RQL   ++ ++   D L AE
Sbjct:  1422 KNRLQQELDDLVVDLDNQ-----RQLVSNLEKKQKKFDQLLAE 1459

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001725 "stress fiber" evidence=IDA

GO:0003774 "motor activity" evidence=IMP

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=IDA

GO:0006939 "smooth muscle contraction" evidence=IDA;IMP

GO:0008152 "metabolic process" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016459 "myosin complex" evidence=IDA

GO:0030485 "smooth muscle contractile fiber" evidence=IDA

GO:0032982 "myosin filament" evidence=IEA

GO:0048251 "elastic fiber assembly" evidence=ISO

GO:0048739 "cardiac muscle fiber development" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	718
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	5e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	6e-05
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	6e-05
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	1e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-04
pfam00509	550	pfam00509, Hemagglutinin, Haemagglutinin	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
pfam13166	713	pfam13166, AAA_13, AAA domain	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	0.004

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 104/565 (18%), Positives = 234/565 (41%), Gaps = 39/565 (6%)

Query: 147 NKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQ 206
            + + D  +  + E+  L K+ E    +    +++    +     EL    ++  +L+A+
Sbjct: 198 LEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKAR 257

Query: 207 FATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEI 266
                    E       + +  E++   + +     ++L     +  E    L+   +E+
Sbjct: 258 LLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEEL 317

Query: 267 SEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDAR 326
            E L +LK+LEE L+K  E   KL  E E+      +L  L    ++  +E++ ++E+  
Sbjct: 318 EELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKL---LEERLKELEERLEELE 374

Query: 327 QSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKG 386
           +  E+    L ++ +   EL     +++    E   ++  L+ +++ L+++L++++ +  
Sbjct: 375 KELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK 434

Query: 387 QLDSQI-------------AREKGECP--------------ESRTELEQRNIKLTNKIAN 419
           +L+ QI             A    +CP                  ELE   ++       
Sbjct: 435 KLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREK 494

Query: 420 QQKIMKNQEDKIADQ-QKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKT 478
           ++  ++ + +++  + +++ + L + +  ++ + +  E+ +EKL    ++ +      + 
Sbjct: 495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL 554

Query: 479 SLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLS 538
                E +  E      K L + +R+L  R +  E+L  E     KK L++LEE    L 
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL-RERLKELKKKLKELEERLSQLE 613

Query: 539 SEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSK 598
              QS ++ +      +A   +ES ++KL +  +L   L    ++L      +      +
Sbjct: 614 ELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRE 673

Query: 599 KSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELE 658
               +  + L +KL+ +E+    L EE+     +L +       I + + ELE +  ELE
Sbjct: 674 LQRIENEEQLEEKLEELEQ----LEEELEQLREELEELLKKLGEIEQLIEELESRKAELE 729

Query: 659 KRIKEQDA---ELLTLGELENKIKQ 680
           +  KE +     L  L EL  K+ +
Sbjct: 730 ELKKELEKLEKALELLEELREKLGK 754

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.0 bits (151), Expect = 9e-10
 Identities = 57/329 (17%), Positives = 146/329 (44%), Gaps = 17/329 (5%)

Query: 337 AKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK 396
           + I +   E+     KI   E     +I  L+  +  L+++L++++ +  QL  ++    
Sbjct: 670 SSILERRREIEELEEKIEELE----EKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 397 GECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQE 456
            +    R +L     +L  ++   ++ +     ++ + +  I+ LE+++ + ++ +   E
Sbjct: 726 RQISALRKDLA----RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781

Query: 457 DTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLH 516
             +E+L  + +Q K ++   + +L     ++T L E+    L + +  L RRI   E+  
Sbjct: 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA-NLRERLESLERRIAATERRL 840

Query: 517 NETKDSYKKTLEQLEESNRLLSSEGQS-RKMRDMLEPGNKALLAMESVVKKLEINGDLAN 575
            + ++  ++  E +E     +    +   ++   LE       ++E  +  L       +
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR------S 894

Query: 576 RLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISN-FEAKLG 634
            L ++S++L   ++  +E     + L++++  L  +L+ +E +   L+E +S  +   L 
Sbjct: 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE 954

Query: 635 KQGGDKLNIIKTMSELEKKVGELEKRIKE 663
           +    +  I     E  +++  LE +IKE
Sbjct: 955 EAEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 61.3 bits (149), Expect = 1e-09
 Identities = 108/544 (19%), Positives = 227/544 (41%), Gaps = 25/544 (4%)

Query: 174 RASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRG 233
                IKE + ++  L+ +L  L +   DL      E K+L  K +E   +EQ  E++  
Sbjct: 175 LLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKEL--KKLEEIQEEQEEEELEQ 232

Query: 234 LVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKE 293
            +        +L     +  EL+  L        E L   +    EL++  E   + ++ 
Sbjct: 233 EIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIER 292

Query: 294 REDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKI 353
            E+    +++LE      + L EE++  +E  +   E  ++L  K+ + E+EL     + 
Sbjct: 293 LEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEK 352

Query: 354 AVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKL 413
                    ++  L+ +++ L+++L+    +  QL+  I   K E      EL     ++
Sbjct: 353 NELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEE----LAELSAALEEI 408

Query: 414 TNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVE----------KLT 463
             ++   +K ++  E ++ + ++ IK LE++I   +       +             +L 
Sbjct: 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468

Query: 464 EESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSY 523
           EE ++   ++   +      E    +   + R+ +E+  + L    +   +L  E +++ 
Sbjct: 469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIEL-LELEEAL 527

Query: 524 KKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDD 583
           K+ LE+  E    L  E +  K +  L+   + L  +E  +++L+   +    L    ++
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEE 587

Query: 584 LASAKNWVTESNNSKKSLQQQVKSLVQKLDR-----MEEQESFLREEISNFEAKLGKQGG 638
           L   +  + E     K L++++  L + L        E +     EE+ +   KL  Q  
Sbjct: 588 LEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAE 647

Query: 639 DKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENK---IKQQDAELLSLGEEKREA 695
            +  +   + ELE+KV ELE  I+ +   +    +LE K   ++Q + EL  L EE  E 
Sbjct: 648 LEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEEL 707

Query: 696 IRQL 699
           +++L
Sbjct: 708 LKKL 711

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 67/332 (20%), Positives = 149/332 (44%), Gaps = 21/332 (6%)

Query: 169 ESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQAT 228
           E +  R    ++ELE Q+ +L+ +       +         E   L  K  EL  + +  
Sbjct: 185 EENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL 244

Query: 229 EQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEH 288
           E             ++L  L  +  ELQ  L+   KEI E  ++L+ L EEL++  E   
Sbjct: 245 E-------------EELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291

Query: 289 KLLKEREDFLMRVKDL----ESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTEN 344
           +L +E E+    +  L    E L N+ ++LEE ++   E     +EE +     + + E 
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 345 ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT 404
            L+         E + SA +  L+   + L+++L +++ +  ++ +++   K E      
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE----IE 407

Query: 405 ELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTE 464
            LE+R  +L+ ++ + ++ +K  E ++ + Q  ++ L +++ + ++ ++   D +++L  
Sbjct: 408 SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 465 ESKQAKRQILGSKTSLQIAERKMTELAEDFRK 496
           E  + + ++   +  L   E ++  L  + R 
Sbjct: 468 ELAELQEELQRLEKELSSLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.1 bits (146), Expect = 4e-09
 Identities = 46/234 (19%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 273 LKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQS---- 328
           ++ LEE++++  E   +L K   +    +++LE    Q +K  EE+  +I   R+     
Sbjct: 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL 738

Query: 329 REENDRLLAKISQTENELSAFRRKIAVQE---NEASAQILALKAKVDNLQQKLDDMQTKK 385
             E ++L  +I+Q   EL+    +I   E    EA  ++   +A+++ L+ +++ ++ + 
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 386 GQLDSQIAREKGECPESRTE---LEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLE 442
             L   +   + E      E   L +R   L  +IA  ++ +++ E++I +  + I++L 
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858

Query: 443 DKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRK 496
            +I + +++++  E  +E L  E    +  +   ++ L+    ++ EL     +
Sbjct: 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 7e-09
 Identities = 70/359 (19%), Positives = 167/359 (46%), Gaps = 20/359 (5%)

Query: 187 SRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLV 246
           SR K    +   + ++LE + A    QL +   EL + +     +  L+ +     ++L 
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL- 714

Query: 247 SLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLES 306
               Q  EL+  L    +E+ +  ++L+ LEEEL++  E   +L +  E+    ++ LE 
Sbjct: 715 --ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEE 772

Query: 307 LCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILA 366
                 KL+EEI+   E  +  +EE + L  ++ + E  L A  R++   E     +   
Sbjct: 773 ---ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE----QRRER 825

Query: 367 LKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKN 426
           L+ +++ L++++++++ K  +L+ ++   + E  E + ELE    +L  +    +  +K 
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELE----ELEAEKEELEDELKE 881

Query: 427 QEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERK 486
            E++  + ++ ++ LE ++A+ ++ ++   + +E+L  + ++ + ++       ++ E  
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVEL------PELEEEL 935

Query: 487 MTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRK 545
             E  +     LE  I  L   I+    ++    + Y++  E+ EE         ++++
Sbjct: 936 EEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKE 994

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 68/311 (21%), Positives = 129/311 (41%), Gaps = 46/311 (14%)

Query: 111 EVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHES 170
           E+ EL  K+    E+ A L     E   +++  E   + LR E +E  R+ISAL K    
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA- 736

Query: 171 HGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQ 230
              R  A +++LE ++++L  EL        +LEA+     ++L E   EL   E   E+
Sbjct: 737 ---RLEAEVEQLEERIAQLSKELT-------ELEAEIEELEERLEEAEEELAEAEAEIEE 786

Query: 231 VRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKL 290
           +                                 +I +   +LK L E L +       L
Sbjct: 787 LE-------------------------------AQIEQLKEELKALREALDELRAELTLL 815

Query: 291 LKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFR 350
            +E  +   R++ LE      ++  E+++ +IE+  +  E     + ++ +   EL +  
Sbjct: 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875

Query: 351 RKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRN 410
             +  +       +  L+++++ L ++L ++++K+ +L     RE  E  E   +LE R 
Sbjct: 876 EALLNERASLEEALALLRSELEELSEELRELESKRSELR----RELEELREKLAQLELRL 931

Query: 411 IKLTNKIANQQ 421
             L  +I N Q
Sbjct: 932 EGLEVRIDNLQ 942

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 1e-08
 Identities = 66/389 (16%), Positives = 144/389 (37%), Gaps = 43/389 (11%)

Query: 84   SEEIEINTSNFRNAHQEI---SIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKI 140
             E+IE          + +     E + +  E+ +LR +L   S + +AL  +     +++
Sbjct: 683  EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 141  QAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQK 200
            +  E     L  E  E + EI  L    E     A   + E E ++  L+ ++  L ++ 
Sbjct: 743  EQLEERIAQLSKELTELEAEIEEL----EERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798

Query: 201  RDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLK 260
            + L         +L   N E     +  E +   +       +DL     + +E    L 
Sbjct: 799  KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL- 857

Query: 261  GKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDG 320
                EI E    ++ LE EL+                     +  SL      L  E++ 
Sbjct: 858  --AAEIEELEELIEELESELEALL-----------------NERASLEEALALLRSELEE 898

Query: 321  KIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDD 380
              E+ R+   +   L  ++ +   +L+    ++             L+ ++DNLQ++L  
Sbjct: 899  LSEELRELESKRSELRRELEELREKLAQLELRLE-----------GLEVRIDNLQERL-- 945

Query: 381  MQTKKGQLDSQ-IAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIK 439
              +++  L  +     + +  +   E  +R  +L NKI     +     ++  + ++   
Sbjct: 946  --SEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003

Query: 440  NLEDKIADQQKIMKNQEDTVEKLTEESKQ 468
             L  +  D  +  +  E+ +E++  E+++
Sbjct: 1004 FLTAQKEDLTEAKETLEEAIEEIDREARE 1032

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 59/322 (18%), Positives = 149/322 (46%), Gaps = 13/322 (4%)

Query: 178 RIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQ 237
           R +E E ++ R +  L  L D   +LE Q     +Q  +       + +  E      ++
Sbjct: 173 RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRE------LE 226

Query: 238 ANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDF 297
             ++   L  L  +  EL+  L    +E+ E   +L+  E+E+++          E E+ 
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS-------ELEEL 279

Query: 298 LMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQE 357
              +++L+    + K+  EE++G+I   R+  EE +  L ++ +   EL      +  + 
Sbjct: 280 REELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Query: 358 NEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKI 417
            E    +  L+  +  L++  ++++ K   L  ++        E   ELE    ++ N++
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 418 ANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSK 477
              ++ +++ E+++    + +++L++++ + +  ++  +  +E+L EE ++ + Q+   +
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 478 TSLQIAERKMTELAEDFRKRLE 499
             L+  ER++ EL E+ ++  +
Sbjct: 460 DRLKELERELAELQEELQRLEK 481

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 20/278 (7%)

Query: 85  EEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAE 144
           EE+E   S      +E+  E +    E+ EL+++L    EE   L  E  E   +I+  E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 145 NMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204
                LR+  +E + E+                R++EL+ ++  LK EL        +LE
Sbjct: 302 GEISLLRERLEELENEL-----------EELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 205 AQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTK 264
              A   +   E   +L A  +  E++         ++++L  L ++  E++  L+   +
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEEL------FEALREELAELEAELAEIRNELEELKR 404

Query: 265 EISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIED 324
           EI     +L+ L E L+   E   +L  E E+    +++L     + ++  EE+  ++++
Sbjct: 405 EIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464

Query: 325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASA 362
             +   E   L  ++ + E ELS+   ++   E E  A
Sbjct: 465 LERELAE---LQEELQRLEKELSSLEARLDRLEAEQRA 499

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 66/348 (18%), Positives = 164/348 (47%), Gaps = 25/348 (7%)

Query: 289 KLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSA 348
           K  + +E+   +++  E    + + L EE++ ++E   +  E+ +R        + EL  
Sbjct: 169 KYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQEL----KAELRE 224

Query: 349 FRRKIAVQE-NEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELE 407
               + + +  E   ++  L+ ++  L+++L+++Q +  + + +I   K E  E R ELE
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 408 QRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESK 467
           +            Q+ +   +++I + +  I  L +++ + +  ++  E+ +E+L E+ +
Sbjct: 285 E-----------LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIE 333

Query: 468 QAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTL 527
             K ++   +T L+  E+ + EL E  ++ LE+ +  L   +   E+L    ++   +  
Sbjct: 334 ALKEELEERETLLEELEQLLAELEE-AKEELEEKLSALLEEL---EELFEALREELAELE 389

Query: 528 EQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASA 587
            +L E    L      R++  + E   +    +E + ++L+   +L   L ++  +L   
Sbjct: 390 AELAEIRNELEE--LKREIESLEERLERLSERLEDLKEELK---ELEAELEELQTELEEL 444

Query: 588 KNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGK 635
              + E     + L+ ++K L ++L  ++E+   L +E+S+ EA+L +
Sbjct: 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.0 bits (138), Expect = 3e-08
 Identities = 61/335 (18%), Positives = 136/335 (40%), Gaps = 27/335 (8%)

Query: 174 RASARIKELEGQVSRLKLELGSLNDQKRDL--EAQFATEAKQLGEKNIELHAQEQATEQV 231
           +A   ++E+E  + RL L +     Q   L  E + A   + L ++  E    E   E  
Sbjct: 174 KALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKE-K 232

Query: 232 RGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLL 291
             L  Q   +++ L SL  +  +L   +    K + E    L+ L +++K   E E   +
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292

Query: 292 KER---------------EDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLL 336
           KE+                +    ++D E    +  KLE EID  + +  +   E +   
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAE---ERLAKLEAEIDKLLAEIEELEREIEEER 349

Query: 337 AKISQTENELSAFRRKIAVQENEA---SAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393
            +  +   E +  + ++     E      +    + ++ + ++KL+ ++ +  +L  ++ 
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409

Query: 394 REKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMK 453
           R + E      EL   N  +    A   ++ + +EDK  + +K    LE   AD  K  +
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469

Query: 454 ---NQEDTVEKLTEESKQAKRQILGSKTSLQIAER 485
              + ++  +++ +E  + +R++  ++   + +E 
Sbjct: 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.3 bits (136), Expect = 6e-08
 Identities = 62/360 (17%), Positives = 167/360 (46%), Gaps = 30/360 (8%)

Query: 331  ENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS 390
            E   L  ++++ E +L     ++         ++ +L+  ++ L+++L++++ +  +L  
Sbjct: 668  ELKELEEELAELEAQLEKLEEEL----KSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 391  QIA---REKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIAD 447
            ++A    E  +      ELE+   +L  ++   Q+ ++  E+++   ++ +  L+++I +
Sbjct: 724  ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 448  QQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFR 507
             ++  +  ++ +E+L EE ++A+R++   +  L+ +  +  E  E   + LE+ I  L  
Sbjct: 784  LEEKRQALQEELEELEEELEEAERRLDALERELE-SLEQRRERLEQEIEELEEEIEELEE 842

Query: 508  RIQVAEQLHNETKDSYKKTLEQLEESN----RLLSSEGQSRKMRDMLEPGNKALLAMESV 563
            ++   E+   E +   ++  E+LEE       L     +  + ++ LE            
Sbjct: 843  KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE------------ 890

Query: 564  VKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQ--ESF 621
                E   +L + L+++ +++   +  + E     + L+ ++  L ++L+   E   E+ 
Sbjct: 891  ----EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946

Query: 622  LREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQ 681
            L  EI   E ++   G   L  I+   E+E++  EL+ + ++ +     L E+  ++ ++
Sbjct: 947  LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.9 bits (135), Expect = 7e-08
 Identities = 60/290 (20%), Positives = 130/290 (44%), Gaps = 19/290 (6%)

Query: 85  EEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAE 144
           + ++    +  +  +E+  + + +  ++ EL+ +L +  EE   L S  +E   +++  E
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750

Query: 145 NMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204
              + L++  +E + E+ +L    E    +    I+ELE +   L+ EL  L ++  + E
Sbjct: 751 EELEELQERLEELEEELESL----EEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806

Query: 205 AQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTK 264
            +     ++L          EQ  E++     +   +++ L  L  +  EL+  L+   +
Sbjct: 807 RRLDALERELESLEQRRERLEQEIEELE---EEIEELEEKLDELEEELEELEKELEELKE 863

Query: 265 EISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIED 324
           E+ E   + + LE+ELK+  E + +L +E          L  L ++  +L+EEI+   E 
Sbjct: 864 ELEELEAEKEELEDELKELEEEKEELEEE----------LRELESELAELKEEIEKLRER 913

Query: 325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNL 374
             +   + +RL  ++ + E EL          E E   +I  L+ +++ L
Sbjct: 914 LEELEAKLERLEVELPELEEELEEEY--EDTLETELEREIERLEEEIEAL 961

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 1e-07
 Identities = 56/278 (20%), Positives = 119/278 (42%), Gaps = 30/278 (10%)

Query: 98  HQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADER 157
            +E++ E Q +  ++ ELR ++    EE   L  E     ++I   E   + LR+     
Sbjct: 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314

Query: 158 QREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEK 217
           +R++               A+++ELE ++  L  EL  L ++  +L+ +  +   +L E 
Sbjct: 315 ERQLE-----------ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363

Query: 218 NIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLE 277
             EL   E   E++     Q   ++  +  L  Q   L         EI     +L+ LE
Sbjct: 364 EAELEELESRLEELE---EQLETLRSKVAQLELQIASLN-------NEIERLEARLERLE 413

Query: 278 EELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLA 337
           +  ++  +   +LLK+ E+    +K+L++   + ++  EE+  ++E   ++ EE    L 
Sbjct: 414 DRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 338 KISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQ 375
           +  Q  +           +  +  A++ +L+   +NL+
Sbjct: 472 EAEQALDAAER-------ELAQLQARLDSLERLQENLE 502

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.7 bits (132), Expect = 2e-07
 Identities = 53/372 (14%), Positives = 161/372 (43%), Gaps = 31/372 (8%)

Query: 298  LMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAV-- 355
            L + ++L+ L  +  +LE +++   E+ +  + E   L   + +   +L    R++    
Sbjct: 663  LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELK 722

Query: 356  -QENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR---EKGECPESRTELEQRNI 411
             +      ++  L+++++ L+++L++++ +  +L  ++     E     E+  +L++   
Sbjct: 723  RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 412  KLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKR 471
            +L  K    Q+ ++  E+++ + ++ +  LE ++   ++  +  E  +E+L EE ++ + 
Sbjct: 783  ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEE 842

Query: 472  QILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLE 531
            ++   +  L+  E+++ EL E+  +   +        ++   +   E K+  ++ L +LE
Sbjct: 843  KLDELEEELEELEKELEELKEELEELEAE-----KEELEDELKELEEEKEELEEELRELE 897

Query: 532  ESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWV 591
                 L  E +                  E   K   +  +L     ++ ++        
Sbjct: 898  SELAELKEEIE-----------KLRERLEELEAKLERLEVELPELEEELEEE-------- 938

Query: 592  TESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELE 651
               +  +  L+++++ L ++++ +        EE    E +  +    + ++ +   +L 
Sbjct: 939  -YEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 652  KKVGELEKRIKE 663
            + + EL+K  +E
Sbjct: 998  EVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.9 bits (130), Expect = 3e-07
 Identities = 70/382 (18%), Positives = 167/382 (43%), Gaps = 26/382 (6%)

Query: 315 EEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNL 374
            E +D  I++ RQ     +RL  +  + E   +  + K   +  E   +  AL+ + + +
Sbjct: 186 IERLDLIIDEKRQQL---ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242

Query: 375 QQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQ 434
           +++L  ++ +  +L  +I+  +    E    LE+ N K+ +    +Q  +K   +KI + 
Sbjct: 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK---EKIGEL 299

Query: 435 QKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDF 494
           +  I +LE  IA++++ +++ E+ + KL  E  +   +I   +  ++   ++  +L E++
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359

Query: 495 RKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGN 554
              L++ +  L   ++  ++   ET+D  K   E+LE+  R ++   +            
Sbjct: 360 -AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD--------- 409

Query: 555 KALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDR 614
                     +  E    L+  L+ ++  +A  +  + E    K+    ++K    KL++
Sbjct: 410 ----------RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459

Query: 615 MEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGEL 674
           +    S   +E+ + + +  +   +   + + ++E E +    E+R++   A    L   
Sbjct: 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519

Query: 675 ENKIKQQDAELLSLGEEKREAI 696
              +    A+L S+GE    AI
Sbjct: 520 IQGVHGTVAQLGSVGERYATAI 541

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 5e-07
 Identities = 109/605 (18%), Positives = 249/605 (41%), Gaps = 60/605 (9%)

Query: 114 ELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLR-DEADERQREISALVKVHESHG 172
           EL  +L     +       YQE  ++++  E      +  E  +   E+   +   E   
Sbjct: 197 ELEKQLEKLERQAEKAE-RYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEEL 255

Query: 173 NRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVR 232
                 ++E E ++  LK EL  L ++  +L+ +     +++ E   E+       E++ 
Sbjct: 256 EELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI---SLLRERLE 312

Query: 233 GLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLK 292
            L  +   +++ L  L  +   L+       +E+ E  T L+ LE+ L +  E + +L +
Sbjct: 313 ELENELEELEERLEELKEKIEALK-------EELEERETLLEELEQLLAELEEAKEELEE 365

Query: 293 EREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRK 352
           +    L   ++LE L    ++   E++ ++ + R   EE  R +         L     +
Sbjct: 366 KLSALL---EELEELFEALREELAELEAELAEIRNELEELKREI-------ESLEERLER 415

Query: 353 IAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIK 412
           ++ +  +   ++  L+A+++ LQ +L+++  +  +L+ Q+   +    E   EL +   +
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 413 LTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKL---TEESKQA 469
           L  ++  +   ++ + D++  +Q+  + +   +   +  +      V +L    E+ + A
Sbjct: 476 LQ-RLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETA 534

Query: 470 KRQILGSK------TSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSY 523
               LG++       + ++A++ +  L E    +      +   RI+    L ++    +
Sbjct: 535 LEAALGNRLQAVVVENEEVAKKAIEFLKE---NKAGRATFLPLDRIKPLRSLKSDAAPGF 591

Query: 524 KKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKM--- 580
                 L + +                EP  + +L    VV  LE    LA +L      
Sbjct: 592 LGLASDLIDFD-------------PKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRI 638

Query: 581 ---SDDLASAKNWVTESNNSKKSLQQQVKSLVQ---KLDRMEEQESFLREEISNFEAKLG 634
                DL      +T  + +K+S   Q + L +   +L  +E Q   L EE+ + + +L 
Sbjct: 639 VTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELR 698

Query: 635 KQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKRE 694
                   + + + ELE+++ EL++ +   + E   L +L++++++ + EL  L EE  E
Sbjct: 699 SLEDLLEELRRQLEELERQLEELKRELAALEEE---LEQLQSRLEELEEELEELEEELEE 755

Query: 695 AIRQL 699
              +L
Sbjct: 756 LQERL 760

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 6e-07
 Identities = 51/321 (15%), Positives = 139/321 (43%), Gaps = 38/321 (11%)

Query: 353 IAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIK 412
           I     + ++ IL  + +++ L++K+++++ K  +L+  +A           EL +   +
Sbjct: 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALA-----------ELRKELEE 709

Query: 413 LTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQ 472
           L  ++   +K ++    +I+  +K +  LE ++   ++ +      + +L  E ++ + +
Sbjct: 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769

Query: 473 ILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEE 532
           +  ++  L  AE ++ EL     ++L++ ++ L   +           +      E+LE 
Sbjct: 770 LEEAEEELAEAEAEIEELEAQI-EQLKEELKALREALDELRAELTLLNEEAANLRERLES 828

Query: 533 SNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVT 592
             R +++  +                             DL  ++ ++S+D+ S    + 
Sbjct: 829 LERRIAATERR--------------------------LEDLEEQIEELSEDIESLAAEIE 862

Query: 593 ESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEK 652
           E     + L+ ++++L+ +   +EE  + LR E+     +L +    +  + + + EL +
Sbjct: 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922

Query: 653 KVGELEKRIKEQDAELLTLGE 673
           K+ +LE R++  +  +  L E
Sbjct: 923 KLAQLELRLEGLEVRIDNLQE 943

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 68/345 (19%), Positives = 168/345 (48%), Gaps = 13/345 (3%)

Query: 270 LTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSR 329
           L +L+   + L++++E   +  + + +  +R  +L  L  + ++L EE++   E+ +++ 
Sbjct: 195 LNELERQLKSLERQAEKAERYKELKAE--LRELELALLVLRLEELREELEELQEELKEAE 252

Query: 330 EENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLD 389
           EE + L A++ + E +L   R ++    +E   +I  L+ ++  L  ++  ++ +K  L 
Sbjct: 253 EELEELTAELQELEEKLEELRLEV----SELEEEIEELQKELYALANEISRLEQQKQILR 308

Query: 390 SQIAR---EKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA 446
            ++A    +  E      ELE +  +L  ++A  ++ ++  ++++   +  ++ LE ++ 
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368

Query: 447 DQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLF 506
           + +  ++  E+ +E L  +  Q + QI      ++  E ++  L ED R+RL+  I  L 
Sbjct: 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL-EDRRERLQQEIEELL 427

Query: 507 RRIQVAE-QLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVK 565
           ++++ AE +      +  ++ LE+L+E    L  E    ++R+ LE   +AL A E  + 
Sbjct: 428 KKLEEAELKELQAELEELEEELEELQEELERL--EEALEELREELEEAEQALDAAERELA 485

Query: 566 KLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQ 610
           +L+   D   RL +  +  +     + ++ +    +   +  L+ 
Sbjct: 486 QLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 62/283 (21%), Positives = 130/283 (45%), Gaps = 17/283 (6%)

Query: 111 EVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHES 170
           E+ EL  +L    EE   L  E +EA  +I+  ++  + LR+E +E Q E+  L      
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL------ 293

Query: 171 HGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQ 230
                   I+ELEG++S L+  L  L ++  +LE +     +++     EL  +E   E+
Sbjct: 294 -----KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE 348

Query: 231 VRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKL 290
           +  L+ +    +++L      + +L  LL+   +       +L  LE EL +      +L
Sbjct: 349 LEQLLAELEEAKEEL------EEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402

Query: 291 LKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFR 350
            +E E    R++ L       K+  +E++ ++E+ +   EE +  L ++ +   EL    
Sbjct: 403 KREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRL 462

Query: 351 RKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393
           +++  +  E   ++  L+ ++ +L+ +LD ++ ++       A
Sbjct: 463 KELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 69/322 (21%), Positives = 142/322 (44%), Gaps = 25/322 (7%)

Query: 150 LRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFAT 209
           LR E ++ +R  + L +  E  G       + LE Q   ++ +L SL ++   L  + + 
Sbjct: 203 LRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262

Query: 210 EAKQLGEKNIELHAQEQATEQVRGLVV-QANVMQQDLVSLTSQKNELQLLLKGKTKEISE 268
             K+L E    L   E+  ++++ L   +   +++ +  L ++   L+       + I+E
Sbjct: 263 LEKRLEEIEQLL---EELNKKIKDLGEEEQLRVKEKIGELEAEIASLE-------RSIAE 312

Query: 269 YLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQS 328
              +L+  EE L K      KLL E E+     +++E    ++ KL EE     E+    
Sbjct: 313 KERELEDAEERLAKLEAEIDKLLAEIEEL---EREIEEERKRRDKLTEEYAELKEELEDL 369

Query: 329 REENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQL 388
           R E + +  + ++T +EL  +R K+     +   +I  LK ++D LQ++L  +  +   L
Sbjct: 370 RAELEEVDKEFAETRDELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADL 425

Query: 389 DSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQ 448
           ++ IA  + +  E   E E + +++      + K+ +   D    +Q++     D   + 
Sbjct: 426 NAAIAGIEAKINELEEEKEDKALEIK---KQEWKLEQLAADLSKYEQEL----YDLKEEY 478

Query: 449 QKIMKNQEDTVEKLTEESKQAK 470
            ++ K       +L E   QA+
Sbjct: 479 DRVEKELSKLQRELAEAEAQAR 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 60/315 (19%), Positives = 147/315 (46%), Gaps = 16/315 (5%)

Query: 400 PESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTV 459
             S    ++   +L  ++A  +  ++  E+++   +  +++LED + + ++ ++  E  +
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 460 EKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNET 519
           E+L  E    + ++   ++ L+  E ++ EL E+  + L++ +  L   ++  E+   + 
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEE-LEELQERLEELEEELESLEEALAKL 777

Query: 520 KDSYKKTLEQLEESN-RLLSSEGQSRKMRDMLEPGNKALLAMESVVKKL--------EIN 570
           K+  ++  E+ +     L   E +  +    L+   + L ++E   ++L        E  
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 571 GDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFE 630
            +L  +L ++ ++L   +  + E     + L+ + + L  +L  +EE++  L EE+   E
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897

Query: 631 AKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLG------ELENKIKQQDAE 684
           ++L +   +   + + + ELE K+  LE  + E + EL          ELE +I++ + E
Sbjct: 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957

Query: 685 LLSLGEEKREAIRQL 699
           + +LG     AI + 
Sbjct: 958 IEALGPVNLRAIEEY 972

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 64/345 (18%), Positives = 157/345 (45%), Gaps = 13/345 (3%)

Query: 368 KAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQ 427
           + K++  ++ L+ ++    +L+ Q+ + + +  ++    E +      ++A     +K  
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237

Query: 428 EDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKM 487
             ++ + ++ +  LE+++ + Q+ ++  E  +E+L  E ++ + ++   +  L   + + 
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE- 296

Query: 488 TELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMR 547
                   + LE  I +L  R++  E    E ++  ++  E++E     L       +  
Sbjct: 297 -------IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEEL 349

Query: 548 DMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKS 607
           + L    +     E   K   +  +L      + ++LA  +  + E  N  + L+++++S
Sbjct: 350 EQLLAELEEAKE-ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIES 408

Query: 608 LVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAE 667
           L ++L+R+ E+   L+EE+   EA+L +   +   + + + ELE+++ EL  R+KE + E
Sbjct: 409 LEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERE 468

Query: 668 L----LTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRT 708
           L      L  LE ++   +A L  L  E+R +     V    +  
Sbjct: 469 LAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESG 513

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 52/303 (17%), Positives = 135/303 (44%), Gaps = 17/303 (5%)

Query: 176 SARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLV 235
            A ++ELE  +  L+LE   L ++  +L+ +     ++L E   EL   E+  E++R   
Sbjct: 219 KAELRELELALLVLRLE--ELREELEELQEELKEAEEELEELTAELQELEEKLEELR--- 273

Query: 236 VQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKERE 295
           ++ + +++++  L  +   L   +    ++      +L  LE +L++      +L  + +
Sbjct: 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLD 333

Query: 296 DFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIA- 354
           +    + +LE    + K+  E ++ ++E+     EE   L +++ + E +L   R K+A 
Sbjct: 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQ 390

Query: 355 --VQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS-----QIAREKGECPESRTELE 407
             +Q    + +I  L+A+++ L+ + + +Q +  +L       ++   + E  E   ELE
Sbjct: 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE 450

Query: 408 QRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESK 467
           +   +L        + ++ + ++        +    ++  +   ++  ++ +E  +E  K
Sbjct: 451 ELQEELERLEE-ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVK 509

Query: 468 QAK 470
              
Sbjct: 510 ALL 512

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 49.0 bits (117), Expect = 7e-06
 Identities = 93/530 (17%), Positives = 197/530 (37%), Gaps = 31/530 (5%)

Query: 79  SEYYSSEEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALS 138
           +     E +E+     R               E  E   +L    EE        +  L 
Sbjct: 256 ARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLE 315

Query: 139 KIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLND 198
           +++      KSL +  ++ + ++  L    E      +   K LE ++  L+  L  L  
Sbjct: 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEK 375

Query: 199 QKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLL 258
           +      +     + + E   EL     A E+++  + +     ++L     +  E    
Sbjct: 376 ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435

Query: 259 LKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEI 318
           L+ +  ++      +  L    +K      +L +E E  L+ + +LE      ++LEEE+
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELEL-----EELEEEL 490

Query: 319 DGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKL 378
                      +E   L  +I + E EL     ++        A    L+ K++ L+  L
Sbjct: 491 --------SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLL 542

Query: 379 DDMQTKKGQLDSQIAREKGECPESR----TELEQRNIKLTNKIANQQKIMKNQEDKIADQ 434
           ++++  K +L  Q  +E+    E R     EL +    L  +    +++ +  ++     
Sbjct: 543 EELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKL 602

Query: 435 QKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDF 494
           +++ + L       Q +  ++ +   +  EE  +++ + L  +  L+   +   E  E+ 
Sbjct: 603 KELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEK 662

Query: 495 RKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGN 554
            + LE  IR   +RI+  EQL  +  +  ++  E+LE             ++R+ LE   
Sbjct: 663 VEELEAEIRRELQRIENEEQLEEK-LEELEQLEEELE-------------QLREELEELL 708

Query: 555 KALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQ 604
           K L  +E ++++LE        L K  + L  A   + E          +
Sbjct: 709 KKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGLR 758

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 50/312 (16%), Positives = 123/312 (39%), Gaps = 30/312 (9%)

Query: 274 KTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDAR------- 326
           ++   EL++  E    L +E       ++ +E+  ++  +   +   KI +         
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 327 ----QSREENDRLLAKISQTENELSAFRRKIAVQENEAS---AQILALKAKVDNLQQKLD 379
               + +E  + L   +S  E E+   + ++   E         +  L+  +++L+ +L 
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 380 D-----MQTKKGQLDSQIAREKGECPESRTELEQRNIK---LTNKIANQQKIMKNQEDKI 431
                 +Q +  +L+ +++R +    E   +L +  ++   L  +I   Q+   + +++I
Sbjct: 790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI 849

Query: 432 ADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELA 491
              +K I+NL  K  + ++ ++  E  +  L       K++    +  L+  ERK+ EL 
Sbjct: 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 492 EDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLE 551
               ++    +  L  +++  E    E     +    + EE      S    +     +E
Sbjct: 910 AQ-IEKKRKRLSELKAKLEALE----EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE 964

Query: 552 PGNKALLAMESV 563
              + + A+E V
Sbjct: 965 ---EEIRALEPV 973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 49.3 bits (118), Expect = 7e-06
 Identities = 43/252 (17%), Positives = 123/252 (48%), Gaps = 9/252 (3%)

Query: 174 RASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHA----QEQATE 229
           R   R++ L+ ++S L+ EL  + ++  +L  + +  ++++GE   E+      +E+  E
Sbjct: 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE 737

Query: 230 QVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLE-----EELKKKS 284
           ++  L    + ++Q++ ++ S+  EL+  ++   +++ +    L  LE       + +  
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797

Query: 285 EVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTEN 344
               KL +E      R++++E   N+    +E ++ +I++ ++ R +    +  I +   
Sbjct: 798 AELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857

Query: 345 ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT 404
            L+  + ++  +  E  A +  L++++ +L+++ D+++ +  +L+ +I   + +  + R 
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917

Query: 405 ELEQRNIKLTNK 416
            L +   KL   
Sbjct: 918 RLSELKAKLEAL 929

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 58/269 (21%), Positives = 129/269 (47%), Gaps = 13/269 (4%)

Query: 433 DQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAE 492
            Q++ +K LE+++A+ +  ++  E+ ++ L  E +  +  +   +  L+  ER++ EL  
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 493 DFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEP 552
           +    LE+ +  L  R++  E+   E ++  ++  E+LEE    L S  ++         
Sbjct: 724 ELA-ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI- 781

Query: 553 GNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKL 612
             +     +++ ++LE   +L   L +    L + +  +      ++ L+Q+++ L +++
Sbjct: 782 -EELEEKRQALQEELE---ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 613 DRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLG 672
           + +EE+   L EE+   E +L         + + + ELE +  ELE  +KE + E   L 
Sbjct: 838 EELEEKLDELEEELEELEKEL-------EELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 673 ELENKIKQQDAELLSLGEEKREAIRQLCV 701
           E   +++ + AEL    E+ RE + +L  
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELEA 919

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 58/365 (15%), Positives = 153/365 (41%), Gaps = 45/365 (12%)

Query: 320 GKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLD 379
           G I  +R    E  RL  ++   + ELS+ + ++   EN        L  ++ +  +K+ 
Sbjct: 664 GGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD----ELSQELSDASRKIG 719

Query: 380 DMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIK 439
           +++ +  QL+ +  + K    E   +L     ++ N  +  +++    E +I + ++ + 
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL----EARIEELEEDLH 775

Query: 440 NLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLE 499
            LE+ + D                      + ++  S+  +   + ++++L E+   R+E
Sbjct: 776 KLEEALND---------------------LEARLSHSR--IPEIQAELSKL-EEEVSRIE 811

Query: 500 DNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLA 559
             +R + +++          K+  +K +++L+E    L  + +S +    +E  N     
Sbjct: 812 ARLREIEQKLNRLTLE----KEYLEKEIQELQEQRIDLKEQIKSIEKE--IENLNGKKEE 865

Query: 560 MESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619
           +E  +++LE        L  +   L   K    E     + L+++++ L  ++++  ++ 
Sbjct: 866 LEEELEELE------AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

Query: 620 SFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKIK 679
           S L+ ++   E +L  +  D     + + E E  + +++  ++  + E+  L  +     
Sbjct: 920 SELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAI 978

Query: 680 QQDAE 684
           Q+  E
Sbjct: 979 QEYEE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 5e-05
 Identities = 116/567 (20%), Positives = 247/567 (43%), Gaps = 42/567 (7%)

Query: 156 ERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLG 215
           +R   I  L+K  E         I E+  ++  L+ EL  L  + ++LE       +   
Sbjct: 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEK 245

Query: 216 EKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKT 275
           E      ++ +  E++R L  +   +++++  L  +  EL+ L K K +E  +     + 
Sbjct: 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEE 304

Query: 276 LEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRL 335
             +EL++  +   +L +E      R+K+LE    + ++L++++  ++E   +  EE   L
Sbjct: 305 YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-ELEKRLEELEERHEL 363

Query: 336 LAKISQTENELSAFRRKIAVQENE-ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR 394
             +    + EL   ++++     E    ++  L+   + +++++  +  + G+L  +I  
Sbjct: 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE 423

Query: 395 ----------EKGECPESRTELEQRNIK-----LTNKIANQQKIMKNQEDKIADQQKIIK 439
                      KG+CP    EL + + K      T ++   +K +K  E+K    +K ++
Sbjct: 424 LKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483

Query: 440 NLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLE 499
            LE  +  + +++K +E   E+L E  ++ K+    +   L+    +  +L E   K L+
Sbjct: 484 ELEKVLKKESELIKLKE-LAEQLKELEEKLKKY---NLEELEKKAEEYEKLKEKLIK-LK 538

Query: 500 DNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLA 559
             I+ L + ++  E+L  +  +  KK  E  EE   LL         +++ E G +++  
Sbjct: 539 GEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELL---------KELEELGFESVEE 589

Query: 560 MESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQE 619
           +E  +K+LE   +    L     +L   +    E    ++ L +  + L +   R+EE  
Sbjct: 590 LEERLKELEPFYNEYLELKDAEKELEREEK---ELKKLEEELDKAFEELAETEKRLEELR 646

Query: 620 SFLREEISNF-EAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELENKI 678
             L E    + E +  +   + L + + ++ L  ++ ELEKR +E    L  L E   + 
Sbjct: 647 KELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706

Query: 679 KQQDAELLSLG------EEKREAIRQL 699
           ++   EL  L       EE RE +++ 
Sbjct: 707 EKAKKELEKLEKALERVEELREKVKKY 733

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 74/455 (16%), Positives = 170/455 (37%), Gaps = 36/455 (7%)

Query: 109 ALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAEN--MNKSLRDEADERQREISALVK 166
             ++ +   +L +  EEK    +  +E L  +++     +     +  +E       L +
Sbjct: 394 ERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGR 453

Query: 167 V-----HESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIEL 221
           +       +       +++  +  + + + E          L+++     K+  E    L
Sbjct: 454 LKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEAL 513

Query: 222 HAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK 281
              E+   Q+R  + +  +       L+ Q   L   L+ +     E +   K +  EL 
Sbjct: 514 QRAERRLLQLRQALDELELQ------LSPQAGSLLHFLRNEAPGWEESIG--KVISPELL 565

Query: 282 KKSEVEHKLLK-EREDFLMRVK-DLESL-CNQKKKLEEEIDGKI---EDARQSREENDRL 335
           ++++++ +L++    D L  V  DL+ L        E E+  ++   E+A QS       
Sbjct: 566 ERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAV----- 620

Query: 336 LAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE 395
            AK  Q E +L     ++  Q+   +    ALK    +LQ+  ++ Q+ K +L+  IA  
Sbjct: 621 -AKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAER 679

Query: 396 KGECPESRTELEQRNIKLTNKIANQQKIMK-----NQEDKIADQQKIIKNLEDKIADQQK 450
           K +      +L+ +  +L  +     + +K      + +++A  Q +   L++++A    
Sbjct: 680 KQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSA 739

Query: 451 IMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQ 510
            ++      +   +E K+   + L S     +    + EL     + LE  I  +  R  
Sbjct: 740 AIEAARTQAKARLKELKKQYDRELASL---DVDPNTVKELKRQ-IEELETTIERIAVRRP 795

Query: 511 VAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRK 545
              +     ++++       EE   L     +   
Sbjct: 796 EVREYRAFMQETWLHRDSLREERPNLAIQLRELES 830

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 111/600 (18%), Positives = 223/600 (37%), Gaps = 60/600 (10%)

Query: 134 QEALSKIQAAENMNKSLRDEADERQREISALVKVH---ESHGNRASARIKELEGQVSRLK 190
           +  +S I   E   KS   E +  +++I+   K H        R S          + LK
Sbjct: 179 RAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238

Query: 191 L---ELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQ---- 243
               EL SL D K   E++  T    L  +  + +  ++  E+   ++       +    
Sbjct: 239 SALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYIN 298

Query: 244 DLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKD 303
           D     +     + +L     EI++Y   +K L    K  ++   K     +D   ++ +
Sbjct: 299 DYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKK-SRYDDLNNQILE 357

Query: 304 LESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQ 363
           LE          + I+   +   +  +  +R+ A IS+           I  + NE + +
Sbjct: 358 LEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVK 417

Query: 364 ILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGE--CPESRTELEQRNIKLTNKIANQQ 421
           +  + +KV +L Q++  ++    +L   +    G+  CP   T L +          N++
Sbjct: 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEK 477

Query: 422 KIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQ 481
           K     E+KI + +  +K++++KI D +K  +  E    +   +S     +I  ++  L+
Sbjct: 478 K--SRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE---SEEINKSINEYNKIESARADLE 532

Query: 482 IAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEES-NRLLS-- 538
             + K+ EL +   K                E++ N  K    + L+    S    L+  
Sbjct: 533 DIKIKINELKDKHDK---------------YEEIKNRYKSLKLEDLDSKRTSWLNALAVI 577

Query: 539 SEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSK 598
           S       R       K L  +ES ++++EI            DD +     + E  N  
Sbjct: 578 SLIDIETNRSRSNEIKKQLNDLESRLQEIEIG---------FPDDKSYIDKSIREIENEA 628

Query: 599 KSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELE 658
            +L  +   + +    +E+    LR +I N++ ++ +       II  + E+  ++ ++E
Sbjct: 629 NNLNNKYNEIQENKILIEK----LRGKIDNYKKQIAEIDS----IIPDLKEITSRINDIE 680

Query: 659 KRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEIA 718
             +K+    L       +  K   A L S  E  R  I +L   I+      + +K    
Sbjct: 681 DNLKKSRKAL-------DDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKK 733

Length = 895

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 83/461 (18%), Positives = 164/461 (35%), Gaps = 104/461 (22%)

Query: 117 NKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRD----------EADERQREISALVK 166
           NK      E   +  + ++ L+ +   +   +              +  + Q E+ AL  
Sbjct: 49  NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108

Query: 167 -----VHESHGNRA----SARIKELEGQVSRLKLELGSLNDQKRDLE-------AQFATE 210
                  E+    +     +R+ +   Q+   + +L   N Q   L+       A     
Sbjct: 109 DNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYAN 168

Query: 211 AKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYL 270
           +++L +    L   +   + +R    Q  ++Q +   L +Q +  +  L+G T       
Sbjct: 169 SQRLQQIRNLLKGGKVGGKALR--PSQRVLLQAEQALLNAQNDLQRKSLEGNT------- 219

Query: 271 TQLKTLEEELKKKSEVEHKLLKEREDFLMR-VKDLESLCNQKKKLEEEIDGKIEDARQSR 329
            QL+ L ++       +   L  R   L   ++ L+   N K+    E    +++A+   
Sbjct: 220 -QLQDLLQK-------QRDYLTARIQRLEHQLQLLQEAINSKRLTLSE--KTVQEAQSQD 269

Query: 330 EEN----DRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK 385
           E      + L+A+  +   +LS    K   + N  + Q L +K  +D L Q        +
Sbjct: 270 EAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQS-------E 322

Query: 386 GQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKI 445
             +  QI+  KG    SR             I  QQ+              +I+ L D+I
Sbjct: 323 RNIKEQISVLKGSLLLSR-------------ILYQQQQALPSA-------DLIEGLADRI 362

Query: 446 AD---------QQK-IMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERK-MTELAEDF 494
           AD         QQ+  +   +  ++KL            G K+ +    R  + +L ++ 
Sbjct: 363 ADLRLEQFEINQQRDALFQPDAYIDKLEA----------GHKSEVTDEVRDALLQLLDER 412

Query: 495 RKRLEDNIRVLFRR------IQVAEQLHNETKDSYKKTLEQ 529
           R+ L+   + L  +      +Q+ +Q      DS + TL Q
Sbjct: 413 RELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLTQ 453

Length = 1113

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 58/288 (20%), Positives = 126/288 (43%), Gaps = 20/288 (6%)

Query: 132 EYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLK- 190
           E  E L + +A E   +++  +    + E+  L +       R     + LE    ++K 
Sbjct: 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD 283

Query: 191 ---LELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVS 247
               E   + ++  +LEA+ A+  + + EK  E    E A E++  L  + + +  ++  
Sbjct: 284 LGEEEQLRVKEKIGELEAEIASLERSIAEKERE---LEDAEERLAKLEAEIDKLLAEIEE 340

Query: 248 LTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESL 307
           L  +  E +      T+E +E   +L+ L  EL+   EV+ +  + R++     + LE L
Sbjct: 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELE---EVDKEFAETRDELKDYREKLEKL 397

Query: 308 CNQKKKLEEEIDGKIEDARQSREEN-------DRLLAKISQTENELSAFRRKIAVQENEA 360
             +  +L+ E+D   E+ ++  EE          + AKI++ E E      +I  QE + 
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 361 S---AQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTE 405
               A +   + ++ +L+++ D ++ +  +L  ++A  + +   S   
Sbjct: 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 87/435 (20%), Positives = 189/435 (43%), Gaps = 27/435 (6%)

Query: 113 SELRNKLMSTSEEKAALNSEYQEALSKIQAAENMN---KSLRDEADERQREISALVKVHE 169
            E  ++L    +  + L  E      +I+  E      + L+ +  E ++ +  L + HE
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362

Query: 170 SHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATE 229
                     K  + ++ RLK  L  L  +K + E +   +AK+  E+ I      + T 
Sbjct: 363 -----LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEIS-----KITA 412

Query: 230 QVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKE-----ISEYLTQLKTLEEELKKKS 284
           ++  L  +   +++ +  L   K +  +  +  T+E     + EY  +LK +E+ELK+  
Sbjct: 413 RIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472

Query: 285 EVEHKLLKEREDFLM------RVKDLESLCNQKKKLEEEIDG-KIEDARQSREENDRLLA 337
           E E KL KE  +          +  L+ L  Q K+LEE++    +E+  +  EE ++L  
Sbjct: 473 EKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE 532

Query: 338 KISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKG 397
           K+ + + E+ + ++++  +  E   ++  L+ K+D L+++L ++  +  +L  +   E  
Sbjct: 533 KLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELE 591

Query: 398 ECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQED 457
           E  +         ++L +     ++  K  +    +  K  + L +     +++ K  E+
Sbjct: 592 ERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651

Query: 458 TVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHN 517
             +K +EE  +  R+     +      R   E  E  R+ ++  +  L   ++  E+   
Sbjct: 652 LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711

Query: 518 ETKDSYKKTLEQLEE 532
           E +   +K LE++EE
Sbjct: 712 ELEK-LEKALERVEE 725

Length = 880

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 42/198 (21%), Positives = 85/198 (42%), Gaps = 13/198 (6%)

Query: 174 RASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRG 233
              A   ELE QV RL+ E+  L   + + ++Q A E         +    E    Q   
Sbjct: 78  DVEADAAELESQVLRLEAEVARL---RAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSL 134

Query: 234 LVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKE 293
              + + ++  L  + +Q  +L+  L G   ++     QL+ + EEL+ + +++ K L  
Sbjct: 135 FESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVS 194

Query: 294 REDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKI 353
           R + L    +LE    ++ + + E+     +    + + D L  +  Q E     FR ++
Sbjct: 195 RLELL----ELE---RERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQT---FREEV 244

Query: 354 AVQENEASAQILALKAKV 371
             +  EA A++  L+ ++
Sbjct: 245 LEELTEAQARLAELRERL 262

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 45/266 (16%), Positives = 117/266 (43%), Gaps = 18/266 (6%)

Query: 429 DKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMT 488
            ++   +  +  L  +++D  + +   E  +E+L +E ++ K ++   +  L   E+++ 
Sbjct: 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754

Query: 489 ELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRD 548
            +    +  L++    +    +   +L     D     LE     +R+   + +  K+ +
Sbjct: 755 NV----KSELKELEARIEELEEDLHKLEEALND-----LEARLSHSRIPEIQAELSKLEE 805

Query: 549 MLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSL 608
            +      L  +E  + +L +  +          ++   +    +     KS+++++++L
Sbjct: 806 EVSRIEARLREIEQKLNRLTLEKEYL------EKEIQELQEQRIDLKEQIKSIEKEIENL 859

Query: 609 VQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAEL 668
             K + +EE+   L   + + E++LG    ++  +   + ELE+K+ ELE +I   + + 
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI---EKKR 916

Query: 669 LTLGELENKIKQQDAELLSLGEEKRE 694
             L EL+ K++  + EL  + + K E
Sbjct: 917 KRLSELKAKLEALEEELSEIEDPKGE 942

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|215960 pfam00509, Hemagglutinin, Haemagglutinin

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 24/108 (22%)

Query: 598 KKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGEL 657
            KS Q+ +  +  KL+ + E+ +      + FEA           I K  SELE+++  L
Sbjct: 366 LKSTQKAIDQITGKLNSLIEKMN------TQFEA-----------IEKEFSELERRINNL 408

Query: 658 EKRIKEQ-------DAELLTLGELENKIKQQDAELLSLGEEKREAIRQ 698
            K++ +        +AELL L E ++ +   D+ + +L E+ R  +R+
Sbjct: 409 NKKVDDGITDIWSYNAELLVLLENQHTLDLHDSNVNNLYEKVRRQLRE 456

Hemagglutinin from influenza virus causes membrane fusion of the viral membrane with the host membrane. Fusion occurs after the host cell internalises the virus by endocytosis. The drop of pH causes release of a hydrophobic fusion peptide and a large conformational change leading to membrane fusion. Length = 550

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 71/354 (20%), Positives = 146/354 (41%), Gaps = 49/354 (13%)

Query: 281 KKKSEVEHKLLKEREDFLMRVKD-LESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKI 339
           +++ E E KL + RE+ L R++D L  L  Q K LE + +          E  +  LA +
Sbjct: 172 ERRKETERKLERTREN-LDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL 230

Query: 340 SQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGEC 399
                EL     ++  +  EA  ++  L A++  L++KL++++ +  +L+ +I   + E 
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 400 PESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTV 459
                E+     +L  +    ++ + N E ++ + +  ++ LE K+ +  + +   E+ +
Sbjct: 291 YALANEIS----RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL 346

Query: 460 EKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNET 519
           E+L EE +  + ++   +  L+  E ++ EL E       + +R    ++++     N  
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQL-----ETLRSKVAQLELQIASLNNE 401

Query: 520 KDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSK 579
            +  +  LE+LE+    L  E +    +  LE      L  E    + E+          
Sbjct: 402 IERLEARLERLEDRRERLQQEIEELLKK--LEEAELKELQAELEELEEELE--------- 450

Query: 580 MSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKL 633
                                       L ++L+R+EE    LREE+   E  L
Sbjct: 451 ---------------------------ELQEELERLEEALEELREELEEAEQAL 477

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 56/310 (18%), Positives = 140/310 (45%), Gaps = 22/310 (7%)

Query: 428 EDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKR---------------- 471
           +++  + ++ ++  E+ +   + +++  E  +EKL  ++++A+R                
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230

Query: 472 --QILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQ 529
             ++   +  L+  E +++ L E+  +  E+         ++  +L    ++  +   E 
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 530 LEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKL-EINGDLANRLSKMSDDLASAK 588
           LE    +   EG+   +R+ LE     L  +E  +++L E    L   L +    L   +
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 589 NWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMS 648
             + E   +K+ L++++ +L+++L+ + E    LREE++  EA+L +   +   + + + 
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEA---LREELAELEAELAEIRNELEELKREIE 407

Query: 649 ELEKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRT 708
            LE+++  L +R+++   EL  L     +++ +  EL    EE  E + +L   +     
Sbjct: 408 SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELER 467

Query: 709 DCDYLKAEIA 718
           +   L+ E+ 
Sbjct: 468 ELAELQEELQ 477

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 7/177 (3%)

Query: 111 EVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHES 170
           E+ E R +    +EE A L  E ++  ++++  +      RDE  + + ++  L +    
Sbjct: 344 EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403

Query: 171 HGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQ 230
                    +EL+    RL  EL  LN     +EA+     ++  +K +E+  QE   EQ
Sbjct: 404 LKRELDRLQEELQ----RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459

Query: 231 VRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVE 287
           +   + +    +Q+L  L  + + ++  L    +E++E   Q +  EE ++    VE
Sbjct: 460 LAADLSKY---EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 51/282 (18%), Positives = 111/282 (39%), Gaps = 24/282 (8%)

Query: 85  EEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSE----YQEALSKI 140
           E IE   ++     ++++ E   +   + E+   L   +++   L  E     +E + ++
Sbjct: 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL 299

Query: 141 QAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQK 200
           +A     +    E +    +    +   E+  ++  A I+ELE ++   +     L ++ 
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359

Query: 201 RDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLK 260
            +L+ +      +L E + E        +  R          + L  L  + NEL+  L 
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYR----------EKLEKLKREINELKRELD 409

Query: 261 GKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDG 320
              +E+     +L  L   +       ++L +E+ED  + +          KK E +++ 
Sbjct: 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI----------KKQEWKLEQ 459

Query: 321 KIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASA 362
              D  +  +E   L  +  + E ELS  +R++A  E +A A
Sbjct: 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 97/502 (19%), Positives = 197/502 (39%), Gaps = 33/502 (6%)

Query: 97  AHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADE 156
            H+E   E + +  E+ +LR  +  T  E+  L  E ++   +++  E     L  EA  
Sbjct: 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL 304

Query: 157 RQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQK---RDLEAQFATEAKQ 213
              +  A+    E+       R +EL  ++   ++   + N++    R+        A++
Sbjct: 305 DDADAEAV----EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360

Query: 214 LGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQL 273
           L E+  EL ++ +               ++++  L  +  EL+        ++      L
Sbjct: 361 LREEAAELESELEEAR------EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL 414

Query: 274 KTLEEELKKKSEVEHKLLKEREDFLMRVKDLESL--------CNQKKKLEEEIDGKIEDA 325
           + L EE  +  E E +L         RV++ E+L        C Q  +    ++  IE+ 
Sbjct: 415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVET-IEED 473

Query: 326 RQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK 385
           R+  EE +  L  + +   E+   R + A    EA  +I  L+ + ++L++ + + +   
Sbjct: 474 RERVEELEAELEDLEEEVEEVEE-RLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532

Query: 386 GQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKI---MKNQEDKIADQQKIIKNLE 442
            +   +    +    E   E E++           ++    +     K+A+ ++ I++LE
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE 592

Query: 443 DKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNI 502
            +I      + + ED +E+L E+ +         +  L     +  EL  +F    E  I
Sbjct: 593 -RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD---EARI 648

Query: 503 RVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMES 562
                  + AE+   + ++   K  E  EE + L +  G      + LE   +   A+E+
Sbjct: 649 EEAREDKERAEEYLEQVEE---KLDELREERDDLQAEIGAVENELEELEELRERREALEN 705

Query: 563 VVKKLEINGDLANRLSKMSDDL 584
            V+ LE   D A  L  M  DL
Sbjct: 706 RVEALEALYDEAEELESMYGDL 727

Length = 880

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 49/287 (17%), Positives = 108/287 (37%), Gaps = 54/287 (18%)

Query: 425 KNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAE 484
              E +I + +K +K LE+KI   +  ++ +E+ +EK   +           K   +  +
Sbjct: 91  IEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAW-----KKLAKKYD 145

Query: 485 RKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEES-NRLLSSEGQS 543
             ++E  +    +         + ++  E        S   +LE+L+     L SS    
Sbjct: 146 SNLSEALKGLNYK----KNFKEKLLK--ELKSVILNASSLLSLEELKAKIKTLFSSNKPE 199

Query: 544 RKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTES--------- 594
             +  +       +   E + K +  + D+   +S++ ++L ++  WV E          
Sbjct: 200 LALLTLSVIDFDEIEQAEILEKSIIGSSDVP--ISELINNLGNSD-WVKEGLEYHEEGDT 256

Query: 595 --------------------NNSKKSLQQQVKSLVQKLDRMEEQ-----ESFLREEISNF 629
                               +   + L +Q++ L+ K +   E+     ES L  E  N 
Sbjct: 257 CPFCQQTITEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENS 316

Query: 630 EAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTLGELEN 676
           E KL  +      +   +  LE+ + +  ++++E+  +  T  ELE+
Sbjct: 317 EFKLDVE-----ELKALLEALEEILEKNLQKLEEKLKDPSTSIELES 358

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 27/267 (10%)

Query: 91  TSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSE----------YQEALSKI 140
                   +++  E++ +   + EL   L S  +E   + SE           +E L K+
Sbjct: 718 IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777

Query: 141 QAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQK 200
           + A   N      +  R  EI A +   E   +R  AR++E+E +++RL LE   L  + 
Sbjct: 778 EEAL--NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

Query: 201 RDLEAQFATEAKQLGEKNIELHAQEQATEQ-VRGLVVQANVMQQDLVSLTSQKNELQLLL 259
           ++L+           E+ I+L  Q ++ E+ +  L  +   ++++L  L +   +L+  L
Sbjct: 836 QELQ-----------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884

Query: 260 KGKTKEISEYLTQLKTLE---EELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEE 316
               KE  E   QL+ LE   EEL+ + E + K L E +  L  +++  S     K  +E
Sbjct: 885 GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944

Query: 317 EIDGKIEDARQSREENDRLLAKISQTE 343
           EI  +       + E  R+  +I   E
Sbjct: 945 EIPEEELSLEDVQAELQRVEEEIRALE 971

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 78/410 (19%), Positives = 170/410 (41%), Gaps = 8/410 (1%)

Query: 259  LKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEI 318
             K K +E  +   +LK      KK  E + K  ++++    + K  E+    + K + E 
Sbjct: 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455

Query: 319  DGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKL 378
              K E+A++  EE  +      + E    A   K   +E +  A      A+      + 
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515

Query: 379  DDMQTKKGQLDSQIAREKGECPESRTELEQRN---IKLTNKIANQQKIMKNQEDKIADQQ 435
               +  K   +++ A E  +  E++   E++    +K   ++   ++  K +E K A++ 
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575

Query: 436  KIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFR 495
            K +   + + A  +K  + + + V KL EE K+ K +        +I   ++ + AE+ +
Sbjct: 1576 KNMALRKAEEA--KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK-AEEEK 1632

Query: 496  KRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNK 555
            K++E   +      + AE+L    +++  K  E+ +++        +++K  +  +   +
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692

Query: 556  ALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRM 615
            AL       KK E          K +++L  A+          K   ++ K   ++  + 
Sbjct: 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752

Query: 616  EEQESFLREEISNFEAKLGKQGGDKLNIIK--TMSELEKKVGELEKRIKE 663
            EE++  +       E K  +   +K  +I+     E EK+  E++K+IK+
Sbjct: 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802

Length = 2084

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 40.3 bits (95), Expect = 0.004
 Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 33/222 (14%)

Query: 124 EEKAALNSEYQEALSKIQAAENMNKSLRDEADERQ-REISALVKVHESHGNRASARIKEL 182
            +  +L ++  EAL K+++       LR+E  +   + +  L+K  E    +    IKEL
Sbjct: 46  RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105

Query: 183 EGQVSRLKLELGSLNDQKRDLE------------AQFATEAKQLGEKNIELHAQEQATEQ 230
           E ++S L+ E+  L  +   LE              F   +  +G    +   + +    
Sbjct: 106 EEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESD 165

Query: 231 VRGLVVQANVMQQDLVSLTSQKN---------------ELQLLLKGKTKE-ISEYLTQLK 274
           V  +   +       V +   K                 L+L  +G   E I E   +L+
Sbjct: 166 VENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELE 225

Query: 275 TLEEELKK-KSEVEHKLLKEREDFLMRVKDLESLCNQKKKLE 315
            +E+E +    E++ +L K+  + L+ + +   L  + ++ E
Sbjct: 226 EIEKERESLLEELK-ELAKKYLEELLALYEY--LEIELERAE 264

Length = 646

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	718
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.88
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.84
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.8
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.79
PF07765	74	KIP1: KIP1-like protein; InterPro: IPR011684 This	99.79
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.78
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.67
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.53
PRK03918	880	chromosome segregation protein; Provisional	99.53
PRK02224	880	chromosome segregation protein; Provisional	99.51
PRK02224	880	chromosome segregation protein; Provisional	99.5
PRK03918	880	chromosome segregation protein; Provisional	99.49
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.44
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.4
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.35
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.35
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.31
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.29
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.27
PRK04778	569	septation ring formation regulator EzrA; Provision	99.15
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.12
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.09
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.08
PRK01156	895	chromosome segregation protein; Provisional	99.06
KOG0018	1141	consensus Structural maintenance of chromosome pro	98.72
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.65
KOG0933	1174	consensus Structural maintenance of chromosome pro	98.62
KOG0996	1293	consensus Structural maintenance of chromosome pro	98.59
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.58
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.5
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.44
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.42
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.33
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.28
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.25
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.2
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.17
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	98.12
KOG0964	1200	consensus Structural maintenance of chromosome pro	97.99
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.98
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.93
PRK04778	569	septation ring formation regulator EzrA; Provision	97.9
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.86
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.85
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.84
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.73
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.73
PHA02562	562	46 endonuclease subunit; Provisional	97.67
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.62
PRK04863	1486	mukB cell division protein MukB; Provisional	97.62
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.55
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.54
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.52
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.42
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.36
PRK11637	428	AmiB activator; Provisional	97.34
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.29
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.24
PRK11637	428	AmiB activator; Provisional	97.13
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.09
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.05
PRK04863	1486	mukB cell division protein MukB; Provisional	97.05
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.03
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.03
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.03
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.98
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.97
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.97
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.92
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.9
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.84
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.82
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.79
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.69
KOG4673	961	consensus Transcription factor TMF, TATA element m	96.66
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.65
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.62
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.61
COG5185	622	HEC1 Protein involved in chromosome segregation, i	96.6
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.37
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.15
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.96
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	95.89
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	95.87
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.86
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	95.8
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.72
COG4477	570	EzrA Negative regulator of septation ring formatio	95.7
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	95.67
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.54
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	95.49
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.34
PRK09039	343	hypothetical protein; Validated	95.24
PRK09039	343	hypothetical protein; Validated	95.23
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.1
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.97
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.94
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.79
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.68
KOG0963	629	consensus Transcription factor/CCAAT displacement	94.6
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.44
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.75
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	93.57
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.1
COG4372	499	Uncharacterized protein conserved in bacteria with	93.01
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	93.0
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	92.5
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.38
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	91.88
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.56
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	91.4
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.36
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	91.34
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.28
COG4942	420	Membrane-bound metallopeptidase [Cell division and	90.89
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	90.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.49
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.3
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	90.29
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	90.01
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	89.83
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	89.55
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	88.73
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.57
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	88.47
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	87.84
COG5185	622	HEC1 Protein involved in chromosome segregation, i	86.68
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	86.25
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.06
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.85
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	84.67
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.59
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	84.36
KOG1003	205	consensus Actin filament-coating protein tropomyos	83.88
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	83.67
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	82.93
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	82.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	81.04
KOG1003	205	consensus Actin filament-coating protein tropomyos	80.71
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	80.16

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.88  E-value=1.9e-13  Score=164.51  Aligned_cols=453  Identities=20%  Similarity=0.282  Sum_probs=282.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          226 QATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLE  305 (718)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~~~~~l~~e~~~l~~~~~~le  305 (718)
                      ++....+.+...+..++..+..+...+.++..++.+...++..+..++......+......+..+...+..+...+..-.
T Consensus      1038 e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1038 ELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556666666666666667777777777777777777777776666666666555555555555555544444322


Q ss_pred             ----HHHHHHHHHHHHHHhhHHHH--------------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          306 ----SLCNQKKKLEEEIDGKIEDA--------------RQSREENDRL----LAKISQTENELSAFRRKIAVQENEASAQ  363 (718)
Q Consensus       306 ----~~~~~~~~le~~l~~~~~~~--------------~~l~~e~~~l----~~~i~ele~~l~~l~~~~~~~~~~~~~~  363 (718)
                          .+.....++...+..+..++              .....++..+    .......+..+..++..+...+.++..+
T Consensus      1118 ~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~q 1197 (1930)
T KOG0161|consen 1118 ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQ 1197 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                11111112222222211111              1122222222    2233344556777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------h---ccCcchHHHHHHHHHHHHHHHHH
Q 043740          364 ILALKAKVDNLQQKLDDMQTKKGQLDSQIARE---------------------K---GECPESRTELEQRNIKLTNKIAN  419 (718)
Q Consensus       364 i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~---------------------~---~~~~~~~~~l~~~~~~L~~e~~~  419 (718)
                      +..+......+.++..+++.....+..++..+                     .   ...++.+.++.....++..++..
T Consensus      1198 le~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~ 1277 (1930)
T KOG0161|consen 1198 LEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEE 1277 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            77777666666666555555555555544432                     1   12224445555678888888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHhHHHHHHHHHHHHH-
Q 043740          420 QQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKR-------QILGSKTSLQIAERKMTELA-  491 (718)
Q Consensus       420 ~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~-------~~~~~~~~~~~l~~kl~~l~-  491 (718)
                      +...+++.+.....+.+....+..+++++...+.........+...+..+..       .++.-...++.+..++..+. 
T Consensus      1278 l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~ 1357 (1930)
T KOG0161|consen 1278 LSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANA 1357 (1930)
T ss_pred             HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887777766666555554444       33333333444555554443 


Q ss_pred             --HHHHHH-----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHhhHH
Q 043740          492 --EDFRKR-----------LEDNIRVLFRRIQVAEQLHN---ETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNK  555 (718)
Q Consensus       492 --~~~~k~-----------le~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~L~~e~~~L~~E~~~~~~~~~~e~~~~  555 (718)
                        ..+++.           ++...+.+..++..+.....   .....+.+...+|+++...+..+         ++..+.
T Consensus      1358 e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d---------~~~~~~ 1428 (1930)
T KOG0161|consen 1358 ELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD---------LERSRA 1428 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHH
Confidence              233332           33344445555555444433   44566777777777766655522         222233


Q ss_pred             HHHHHHHHHHHH---------------HHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          556 ALLAMESVVKKL---------------EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQES  620 (718)
Q Consensus       556 ~~~~~e~~~~~~---------------e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~  620 (718)
                      ....+++.+..+               ................+..+...+..+....+++......+..++.++.....
T Consensus      1429 ~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333               22334455666777777778888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-HHHHHhhhhhhhHHHhh
Q 043740          621 FLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLT-LGELENKIKQQDAELLS  687 (718)
Q Consensus       621 ~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~~~~-~~e~~~~l~~lk~~i~~  687 (718)
                      .++..+|+++.....++.++..++..|.++.......+....++...+.. ..++.+.+.....++..
T Consensus      1509 e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~ 1576 (1930)
T KOG0161|consen 1509 EGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEE 1576 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999888777766655554444444 35666666666555444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.84  E-value=2e-12  Score=155.93  Aligned_cols=139  Identities=21%  Similarity=0.232  Sum_probs=95.9

Q ss_pred             chHHHHHHHHHHHHhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhccccCcccCCCCCCCCCCCCCccCCC
Q 043740            4 SKAEIEDQVKKILKLVRSKDNGITKESKRESELVGLINNFHDRYQSLYAHYNLLKGKSGVRKGKGMNYSPCSSSDSEYYS   83 (718)
Q Consensus         4 ~~~~~~~~vk~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   83 (718)
                      -++..+.+|+.+-+-|...++.++++.+.|++|...+.++...++++.++.+++        .|...+..+..+|++...
T Consensus       958 Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l--------~k~~~kle~~l~~le~~l 1029 (1930)
T KOG0161|consen  958 EKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL--------NKAKAKLEQQLDDLEVTL 1029 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999        776777778888888766


Q ss_pred             cHHhhh------chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 043740           84 SEEIEI------NTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSL  150 (718)
Q Consensus        84 ~~~~~~------~~~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L  150 (718)
                      .++.+.      .+..+..........+..+...+.++...+.....+...+..++......+..+...+..|
T Consensus      1030 e~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL 1102 (1930)
T KOG0161|consen 1030 EREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKEL 1102 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            666443      1123333333444444445555555555555555555555555544444444433333333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.80  E-value=7.4e-11  Score=146.70  Aligned_cols=43  Identities=19%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             HHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhh
Q 043740          671 LGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEI  717 (718)
Q Consensus       671 ~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~  717 (718)
                      ...+...+..+...|..+||||+.||++|.    .+.+||+||...+
T Consensus       953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~----~~~~~~~~l~~q~  995 (1164)
T TIGR02169       953 LEDVQAELQRVEEEIRALEPVNMLAIQEYE----EVLKRLDELKEKR  995 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHH----HHHHHHHHHHHHH
Confidence            467888899999999999999999999999    9999999998764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.79  E-value=4.3e-11  Score=145.79  Aligned_cols=41  Identities=27%  Similarity=0.358  Sum_probs=38.5

Q ss_pred             HHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhh
Q 043740          673 ELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEI  717 (718)
Q Consensus       673 e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~  717 (718)
                      .+++.+..++..|..|||||+.||++|.    .+.+||+||....
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e----~~~~r~~~l~~~~  986 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLRAIEEYE----EVEERYEELKSQR  986 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHH----HHHHHHHHHHHHH
Confidence            6889999999999999999999999999    9999999998764

>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants

Probab=99.79  E-value=8e-20  Score=137.64  Aligned_cols=55  Identities=25%  Similarity=0.553  Sum_probs=52.9

Q ss_pred             CccchHHHHHHHHHHHHhhhcCCccc----chhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 043740            1 MEVSKAEIEDQVKKILKLVRSKDNGI----TKESKRESELVGLINNFHDRYQSLYAHYN   55 (718)
Q Consensus         1 ~~~~~~~~~~~vk~~~~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   55 (718)
                      +++|+++||.+||.|+++|+++||||    +|||++||+|+.+|++|||+||+||++||
T Consensus        16 L~~~l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAerYD   74 (74)
T PF07765_consen   16 LQENLSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAERYD   74 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            36899999999999999999999999    69999999999999999999999999997

They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.78  E-value=2.7e-10  Score=141.93  Aligned_cols=128  Identities=17%  Similarity=0.230  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHH
Q 043740          575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE-LEKK  653 (718)
Q Consensus       575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e-~~~~  653 (718)
                      ..+..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+...+..+...+++ +. .
T Consensus       866 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~-~  944 (1179)
T TIGR02168       866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-R  944 (1179)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            333444444444444444444445555555555555555555555555555666666666666666666555555 22 2


Q ss_pred             HhHHHHHHHHHHHHHHhHHH----HHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhh----ccchHHHHhh
Q 043740          654 VGELEKRIKEQDAELLTLGE----LENKIKQQDAELLSLGEEKREAIRQLCVFIDHQR----TDCDYLKAEI  717 (718)
Q Consensus       654 ~~~~e~~~~~~~~~~~~~~e----~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~----er~~fL~~~~  717 (718)
                      +...   +.   ....+...    +...+..++..|..|||    ||++|.    .++    +||+||...+
T Consensus       945 ~~~~---~~---~~~~~~~~~~~~~~~~~~~l~~~i~~lg~----aiee~~----~~~~~a~er~~~l~~q~ 1002 (1179)
T TIGR02168       945 LSEE---YS---LTLEEAEALENKIEDDEEEARRRLKRLEN----KIKELG----PVNLAAIEEYEELKERY 1002 (1179)
T ss_pred             HHHH---hc---cCHHHHHhhccccccCHHHHHHHHHHHHH----HHHHcC----CCCHHHHHHHHHHHHHH
Confidence            1111   00   00001111    45677889999999999    999999    899    9999998754

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.67  E-value=2.9e-08  Score=123.85  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=82.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-H
Q 043740          572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE-L  650 (718)
Q Consensus       572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e-~  650 (718)
                      .+...+..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+...+......+.. +
T Consensus       870 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~  949 (1179)
T TIGR02168       870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEY  949 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555555555555555555555555555666666666666666666666666666666555554333322 2


Q ss_pred             HHHHhHHHHHHHHHHHHHHhHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHHHhh
Q 043740          651 EKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLKAEI  717 (718)
Q Consensus       651 ~~~~~~~e~~~~~~~~~~~~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~~~~  717 (718)
                      ........ ....  ..-.....++..+..+-..|.+++++|..|++.|.    .+..+|+.|...+
T Consensus       950 ~~~~~~~~-~~~~--~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~----~l~~q~~dL~~~~ 1009 (1179)
T TIGR02168       950 SLTLEEAE-ALEN--KIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE----ELKERYDFLTAQK 1009 (1179)
T ss_pred             ccCHHHHH-hhcc--ccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH----HHHHHHHHHHHHH
Confidence            11111110 0000  00012456777888888899999999999999999    8888888887653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.53  E-value=5.5e-07  Score=107.97  Aligned_cols=101  Identities=17%  Similarity=0.284  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043740          345 ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIM  424 (718)
Q Consensus       345 ~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~l  424 (718)
                      .+......|.+....+..+|..+...+.++...+..|..++..+..++............++-..+.-+..+...+....
T Consensus       941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen  941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence            33334444444444555566666666666666666666666666555544332222344455556666666666665555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 043740          425 KNQEDKIADQQKIIKNLEDKI  445 (718)
Q Consensus       425 e~~~~~~~~l~~e~~~l~~~i  445 (718)
                      .........++.++......+
T Consensus      1021 s~~~~~~~~~k~dl~~~~~~~ 1041 (1822)
T KOG4674|consen 1021 SQANEQIEDLQNDLKTETEQL 1041 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444443333

>PRK03918 chromosome segregation protein; Provisional

Probab=99.53  E-value=6e-07  Score=108.14  Aligned_cols=49  Identities=18%  Similarity=0.425  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcchHHHHH
Q 043740          359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK---GECPESRTELE  407 (718)
Q Consensus       359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~---~~~~~~~~~l~  407 (718)
                      .+......+...+..+...+..+...+..+...+..+.   ..||.|..++.
T Consensus       395 ~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~  446 (880)
T PRK03918        395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT  446 (880)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence            33344445555666666666666666666666666554   45776555554

>PRK02224 chromosome segregation protein; Provisional

Probab=99.51  E-value=7.4e-07  Score=107.18  Aligned_cols=32  Identities=9%  Similarity=0.247  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          362 AQILALKAKVDNLQQKLDDMQTKKGQLDSQIA  393 (718)
Q Consensus       362 ~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~  393 (718)
                      ..+..+...+..+...+..+...+..+..-+.
T Consensus       412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~  443 (880)
T PRK02224        412 DFLEELREERDELREREAELEATLRTARERVE  443 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.50  E-value=9.3e-07  Score=106.32  Aligned_cols=25  Identities=0%  Similarity=0.080  Sum_probs=12.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 043740           31 KRESELVGLINNFHDRYQSLYAHYNL   56 (718)
Q Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~~~   56 (718)
                      +.|..+++.+-++ ..|...+.++..
T Consensus       149 ~~R~~ii~~l~~l-~~~e~~~~~~~~  173 (880)
T PRK02224        149 SDRQDMIDDLLQL-GKLEEYRERASD  173 (880)
T ss_pred             HHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence            4555666655555 444444444444

>PRK03918 chromosome segregation protein; Provisional

Probab=99.49  E-value=1e-06  Score=106.15  Aligned_cols=20  Identities=20%  Similarity=0.302  Sum_probs=7.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHH
Q 043740          139 KIQAAENMNKSLRDEADERQ  158 (718)
Q Consensus       139 ~l~e~~~~~~~L~~~~~~l~  158 (718)
                      .+..+...+..+...+..+.
T Consensus       208 ei~~l~~e~~~l~~~~~~~~  227 (880)
T PRK03918        208 EINEISSELPELREELEKLE  227 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.44  E-value=1.2e-06  Score=99.55  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 043740           92 SNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESH  171 (718)
Q Consensus        92 ~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~  171 (718)
                      ....+.+..+..+...+..++..|...| ....+...|..+++........+.. ..-....+..+..+.+.+.....- 
T Consensus        56 ~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~-  132 (775)
T PF10174_consen   56 SRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELER-  132 (775)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHH-
Confidence            4445555555666667777777777777 7777767676665544333333322 333333333443333333322222 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       172 ~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                         +...+..++..+..+...+......+..+...+
T Consensus       133 ---lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L  165 (775)
T PF10174_consen  133 ---LRKTLEELQLRIETQQQTLDKADEEIEKLQEML  165 (775)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               444455555555555555555555555554433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.40  E-value=4.1e-06  Score=100.71  Aligned_cols=91  Identities=19%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             HHhhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhh
Q 043740          568 EINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREE--------ISNFEAKLGKQGGD  639 (718)
Q Consensus       568 e~~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~--------~~~le~~~~~le~e  639 (718)
                      +++..+...+..++..+..++..+..+..+......++..|..+...+..+.+.+...        +.++...+.++..+
T Consensus      1243 ~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~e 1322 (1822)
T KOG4674|consen 1243 EKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEE 1322 (1822)
T ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence            4445556666666666666666666666666666666666666666666665555544        34555555555555


Q ss_pred             HHHHHHHHHHHHHHHhHHH
Q 043740          640 KLNIIKTMSELEKKVGELE  658 (718)
Q Consensus       640 ~~~~~~~l~e~~~~~~~~e  658 (718)
                      +......+.++...+..+.
T Consensus      1323 l~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1323 LEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5555555555555544443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=4e-06  Score=95.36  Aligned_cols=41  Identities=15%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             HHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHH
Q 043740          674 LENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLK  714 (718)
Q Consensus       674 ~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~  714 (718)
                      +-..+..+...+.++|.||.++|.+|.-.......|..-|.
T Consensus      1076 i~e~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~ 1116 (1293)
T KOG0996|consen 1076 INEKIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELE 1116 (1293)
T ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            44467788899999999999999999977777777766654

>TIGR00606 rad50 rad50

Probab=99.35  E-value=1.2e-05  Score=100.06  Aligned_cols=105  Identities=11%  Similarity=0.143  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHhhhhhh-----h
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSL---RDEADERQREISALVKVHES-----H  171 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L---~~~~~~l~~el~~l~~~~e~-----~  171 (718)
                      .....+..++..+.++...+......+......+......+......+..+   ...+..+...+..+....+.     .
T Consensus       416 e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (1311)
T TIGR00606       416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL  495 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333344444555555555554444444444444444444444443333211   12333333344333332222     1


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLE  204 (718)
Q Consensus       172 ~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~  204 (718)
                      ...+..+|......+..+..++..+..++..+.
T Consensus       496 ~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~  528 (1311)
T TIGR00606       496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLN  528 (1311)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223556666666666666666666666554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=99.31  E-value=1.8e-05  Score=98.36  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA  446 (718)
Q Consensus       402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~  446 (718)
                      .+.++...+..+..+...+...+..+......+...+..+...+.
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~  867 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN  867 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555544444444444444444555533333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=7e-06  Score=91.40  Aligned_cols=63  Identities=27%  Similarity=0.323  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 043740           93 NFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD  155 (718)
Q Consensus        93 ~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~  155 (718)
                      .+...+.+..+++..+..++.+|...|..+..+++.+.++...+.+....++-.+..|+.++.
T Consensus       255 ~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~  317 (1200)
T KOG0964|consen  255 QYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQIT  317 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Confidence            344455567777888888888999899888888888888877777766666655555554443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.27  E-value=1.2e-05  Score=91.59  Aligned_cols=125  Identities=12%  Similarity=0.268  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          367 LKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA  446 (718)
Q Consensus       367 l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~  446 (718)
                      ++..++.+..++..-..++..+...+.....    .-.++..++..|..++.........|...+..+...+......++
T Consensus       285 mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~----~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~  360 (775)
T PF10174_consen  285 MKSKMDRLKLELSRKKSELEALQTRLETLEE----QDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE  360 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            3334444555555444455555554444433    334566778888877777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 043740          447 DQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFR  495 (718)
Q Consensus       447 ~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~~~~~  495 (718)
                      .....+......++.+..++..+.+.+......+..+..+|+.+...++
T Consensus       361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~  409 (775)
T PF10174_consen  361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR  409 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777888888888888888778888888888777765543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=99.15  E-value=1.1e-05  Score=91.21  Aligned_cols=130  Identities=15%  Similarity=0.256  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043740          575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV  654 (718)
Q Consensus       575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~  654 (718)
                      ..+..+...+..+...+.......+.+......+...+..+......+...+..+..........+..+...+.      
T Consensus       355 keL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~------  428 (569)
T PRK04778        355 KQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH------  428 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            33444444444444444333333444444444444444444444444444444444444333333333333333      


Q ss_pred             hHHHHHHHHHHHH-----HH-hHHHHHhhhhhhhHHHhhccHHHHHHHH-HHHHHHHhhhccchHHHHh
Q 043740          655 GELEKRIKEQDAE-----LL-TLGELENKIKQQDAELLSLGEEKREAIR-QLCVFIDHQRTDCDYLKAE  716 (718)
Q Consensus       655 ~~~e~~~~~~~~~-----~~-~~~e~~~~l~~lk~~i~~lg~vn~~aIe-ey~~~~~~~~er~~fL~~~  716 (718)
                       .....+.....+     +. ....+...+..+...|.. ||||+.||. +|.    .+.+||+||...
T Consensus       429 -~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~----e~~~~~~~L~~q  491 (569)
T PRK04778        429 -EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLE----EATEDVETLEEE  491 (569)
T ss_pred             -HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH----HHHHHHHHHHHH
Confidence             332222211111     22 356888999999999999 999999999 999    999999999865

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.12  E-value=0.00012  Score=90.04  Aligned_cols=27  Identities=11%  Similarity=0.051  Sum_probs=15.6

Q ss_pred             cHHHHHHHHHHHHHHHhhhccchHHHH
Q 043740          689 GEEKREAIRQLCVFIDHQRTDCDYLKA  715 (718)
Q Consensus       689 g~vn~~aIeey~~~~~~~~er~~fL~~  715 (718)
                      ..++......|...++.+...|.++=.
T Consensus      1001 ~~~d~~~~~~f~~~f~~In~~F~~if~ 1027 (1163)
T COG1196        1001 EELDKEKRERFKETFDKINENFSEIFK 1027 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555566666677776665543

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.09  E-value=1.6e-11  Score=143.27  Aligned_cols=55  Identities=20%  Similarity=0.383  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          404 TELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDT  458 (718)
Q Consensus       404 ~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~  458 (718)
                      ..++..+..|..++..+...+......+..+.+.+..|...+.+++..+.+....
T Consensus       429 e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~  483 (859)
T PF01576_consen  429 EELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDA  483 (859)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555444444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.08  E-value=1.7e-11  Score=143.13  Aligned_cols=335  Identities=19%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK---GECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQK  436 (718)
Q Consensus       360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~---~~~~~~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~  436 (718)
                      +...+.++...+..+.+........+..++..+..+.   .+....++++.....+|..++..+...++........+.+
T Consensus       157 l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r  236 (859)
T PF01576_consen  157 LEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQR  236 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555555555666666666553   3344677888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhHHHHHHHHHHHHH---HHHHH----------
Q 043740          437 IIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAK-------RQILGSKTSLQIAERKMTELA---EDFRK----------  496 (718)
Q Consensus       437 e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~-------~~~~~~~~~~~~l~~kl~~l~---~~~~k----------  496 (718)
                      ....+..++.+++..+.........+...+..+.       ..+..-......+...+..+.   ..|++          
T Consensus       237 ~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~  316 (859)
T PF01576_consen  237 EKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRT  316 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH
Confidence            9999999999998888776666555554444433       333332223333333333332   11111          


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHhhHHHHHHHHHHHHHHHH---
Q 043740          497 -RLEDNIRVLFRRIQVAEQLHN---ETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEI---  569 (718)
Q Consensus       497 -~le~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~L~~e~~~L~~E~~~~~~~~~~e~~~~~~~~~e~~~~~~e~---  569 (718)
                       .++...+.+...+.++...+.   ..+.++.+...+|+.++.++.         ..+++.++....+++..++|+.   
T Consensus       317 EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~---------~eLe~~~~~~~~LeKKqr~fDk~l~  387 (859)
T PF01576_consen  317 EELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLT---------SELEKAQAAAAELEKKQRKFDKQLA  387 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence             233344455555555555543   446678888888888777665         2234444445555555555511   


Q ss_pred             ------------hhHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043740          570 ------------NGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQG  637 (718)
Q Consensus       570 ------------~~~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le  637 (718)
                                  ...+......+.+++..++..+..+......+......|..++.++...+...+..+|.++..+..++
T Consensus       388 e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE  467 (859)
T PF01576_consen  388 EWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLE  467 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHH
Confidence                        12445566777888888888888888899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-HHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHH
Q 043740          638 GDKLNIIKTMSELEKKVGELEKRIKEQDAELLT-LGELENKIKQQDAELLSLGEEKREAIRQLCVFI  703 (718)
Q Consensus       638 ~e~~~~~~~l~e~~~~~~~~e~~~~~~~~~~~~-~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~  703 (718)
                      .++..+...|.+....+...+....++...+.. ..++.+.|......+..+----.-.|+.+...|
T Consensus       468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~L  534 (859)
T PF01576_consen  468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAEL  534 (859)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHH
Confidence            999999999999999998888888887777766 467888888887776664433344555555444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.06  E-value=0.00017  Score=86.97  Aligned_cols=49  Identities=20%  Similarity=0.424  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCcchHHHHH
Q 043740          359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR--EKGECPESRTELE  407 (718)
Q Consensus       359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~--~~~~~~~~~~~l~  407 (718)
                      ++...+..+...+..+...+..+...+..+..-+..  .-..||.|+.++.
T Consensus       413 e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~  463 (895)
T PRK01156        413 EINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG  463 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC
Confidence            344445555555555555555555555555443332  2345776666654

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.72  E-value=0.0014  Score=74.92  Aligned_cols=102  Identities=18%  Similarity=0.290  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 043740          436 KIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELA----EDFRKRLEDNIRVLFRRIQV  511 (718)
Q Consensus       436 ~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~----~~~~k~le~~i~~l~~~~~~  511 (718)
                      .+...+...+..+..++....+.+..+.+.+..+...+...+..+..|+.+++.+.    .+||..+++.|+.|+.... 
T Consensus       697 ~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-  775 (1141)
T KOG0018|consen  697 LDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-  775 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-
Confidence            34444455555556666677777777788888888888888888888888888776    8999999999999999877 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 043740          512 AEQLHNETKDSYKKTLEQLEESNRLLSSEGQ  542 (718)
Q Consensus       512 ~~~~~~~~~~~~~~~~~~L~~e~~~L~~E~~  542 (718)
                       .+.++..+..|..++.++..   .|.++++
T Consensus       776 -~~~~a~k~~ef~~q~~~l~~---~l~fe~~  802 (1141)
T KOG0018|consen  776 -QQEFAKKRLEFENQKAKLEN---QLDFEKQ  802 (1141)
T ss_pred             -HHHHHHHHHHHHHHHHHHhh---hhhheec
Confidence             77778888899999999987   6777755

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.65  E-value=0.0042  Score=76.75  Aligned_cols=61  Identities=25%  Similarity=0.409  Sum_probs=39.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          144 ENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE  204 (718)
Q Consensus       144 ~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~  204 (718)
                      ...+..++..+..+...+..+.....+....+..++..+...+...+..++.+...+...+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye  340 (1201)
T PF12128_consen  280 EQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYE  340 (1201)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555566777777777777777777777777766654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=0.0025  Score=72.19  Aligned_cols=139  Identities=15%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q 043740          572 DLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELE  651 (718)
Q Consensus       572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~  651 (718)
                      .+...+.........+...+.........+..++..+......+........-..+.++..+.++..+...+...+..+.
T Consensus       854 ~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~  933 (1174)
T KOG0933|consen  854 NLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLL  933 (1174)
T ss_pred             HHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHH
Confidence            33344444444444444444444444445555555555555666666666666677777777777777777777776666


Q ss_pred             HHHhHHHHHHHHHHH-----HH--HhHHHHHhhhhhhhHHHhhcc-HHHHHHHHHHHHHHHhhhccchHHH
Q 043740          652 KKVGELEKRIKEQDA-----EL--LTLGELENKIKQQDAELLSLG-EEKREAIRQLCVFIDHQRTDCDYLK  714 (718)
Q Consensus       652 ~~~~~~e~~~~~~~~-----~~--~~~~e~~~~l~~lk~~i~~lg-~vn~~aIeey~~~~~~~~er~~fL~  714 (718)
                      ..+..+.....-...     ++  .++...+.+++.+...+..|+ .|||.++.=+.    .+..+|.-|.
T Consensus       934 ~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle----~~E~~~~~lk 1000 (1174)
T KOG0933|consen  934 KKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLE----RAEEKEAALK 1000 (1174)
T ss_pred             HhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHH----HHHHHHHHHH
Confidence            655554322110000     01  135677888888877777775 47777776666    6666555544

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=0.0035  Score=72.32  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=27.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          139 KIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQ  206 (718)
Q Consensus       139 ~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~  206 (718)
                      .+...+.++..|......++.+++............+...+..++..+..+..++.....+....+.+
T Consensus       441 ~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaese  508 (1293)
T KOG0996|consen  441 EIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESE  508 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444333332222222244444444444444444444444444444433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.58  E-value=0.003  Score=71.46  Aligned_cols=112  Identities=20%  Similarity=0.228  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhh
Q 043740           92 SNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESH  171 (718)
Q Consensus        92 ~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~  171 (718)
                      .-+.-.+..+...|-.+..++++--..+-.+..+++.+..++......+.++-...    .......+++..+....+.-
T Consensus       173 ~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea----~ra~~yrdeldalre~aer~  248 (1195)
T KOG4643|consen  173 LHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEA----HRADRYRDELDALREQAERP  248 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhHHHHHHHhhhcC
Confidence            33444444444444444444444444444444444444444444333333332222    22223333333333322221


Q ss_pred             hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          172 GNRASARIKE---LEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       172 ~~~~~~~i~~---l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                      -..+..++-+   ....+.+++..-.-|..++.-++++|
T Consensus       249 d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQL  287 (1195)
T KOG4643|consen  249 DTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQL  287 (1195)
T ss_pred             CCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            2233333333   46667777777777777777766666

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.50  E-value=0.0026  Score=66.72  Aligned_cols=78  Identities=22%  Similarity=0.249  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          125 EKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE  204 (718)
Q Consensus       125 e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~  204 (718)
                      +...|+..|......+..++.....|...+..+......-   .......+...+..+...+..+..+...+..++..+.
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~---~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~   81 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEE---VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK   81 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccc---CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence            3455666777777777777777766666666665542111   1111222445555555555555555555555544444


Q ss_pred             H
Q 043740          205 A  205 (718)
Q Consensus       205 ~  205 (718)
                      .
T Consensus        82 ~   82 (312)
T PF00038_consen   82 E   82 (312)
T ss_dssp             H
T ss_pred             H
Confidence            3

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.44  E-value=0.0049  Score=66.96  Aligned_cols=45  Identities=20%  Similarity=0.206  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 043740          108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRD  152 (718)
Q Consensus       108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~  152 (718)
                      ...+..+|......+..+...+..++......+.........|..
T Consensus       148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~  192 (546)
T PF07888_consen  148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ  192 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433334333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.42  E-value=0.016  Score=71.83  Aligned_cols=12  Identities=8%  Similarity=0.246  Sum_probs=8.3

Q ss_pred             HHHHHHHhhhcC
Q 043740           11 QVKKILKLVRSK   22 (718)
Q Consensus        11 ~vk~~~~~i~~~   22 (718)
                      =||.||=-|..+
T Consensus       199 ~iK~mIi~i~~e  210 (1201)
T PF12128_consen  199 FIKNMIIAILEE  210 (1201)
T ss_pred             HHHHHHHHHHHh
Confidence            377777777766

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.33  E-value=0.0091  Score=64.92  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043740          108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA  163 (718)
Q Consensus       108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~  163 (718)
                      +......|+.....+..+...+...+.........+......+......+..+...
T Consensus       155 L~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~  210 (546)
T PF07888_consen  155 LLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERES  210 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.28  E-value=0.011  Score=64.20  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          437 IIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILG  475 (718)
Q Consensus       437 e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~  475 (718)
                      .+..+..++..+-.+++.+.+....|..++..++..+..
T Consensus       350 ~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLeg  388 (546)
T KOG0977|consen  350 EIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEG  388 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhcc
Confidence            334444444444444444444455555566555555443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.25  E-value=0.0064  Score=60.64  Aligned_cols=15  Identities=20%  Similarity=0.091  Sum_probs=5.5

Q ss_pred             HhHHHHHHHHHHHHH
Q 043740          146 MNKSLRDEADERQRE  160 (718)
Q Consensus       146 ~~~~L~~~~~~l~~e  160 (718)
                      .+..|...+.-++..
T Consensus        37 e~~~l~rri~~lE~~   51 (237)
T PF00261_consen   37 EVASLQRRIQLLEEE   51 (237)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.20  E-value=0.021  Score=63.98  Aligned_cols=210  Identities=20%  Similarity=0.276  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHH
Q 043740          175 ASARIKELEGQVSRLKLELGSLNDQKRDLEAQF-----------ATEAKQLGEKNIELHAQEQATEQVRGL----VVQAN  239 (718)
Q Consensus       175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l-----------~~~~~~l~e~~~~l~~~~~~~~~~~~l----~~~l~  239 (718)
                      .+++...++..+..++..++.+..+..-|...+           ..+.++|+.-+..|.   +....++++    .....
T Consensus       323 AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLK---dalVrLRDlsA~ek~d~q  399 (1243)
T KOG0971|consen  323 AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLK---DALVRLRDLSASEKQDHQ  399 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHH---HHHHHHHhcchHHHHHHH
Confidence            445555555555555555555555554444444           445666666666665   222333322    12233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 043740          240 VMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKK---SEVEHKLLKEREDFLMRVKDLESLCNQK---KK  313 (718)
Q Consensus       240 ~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~---~~~~~~l~~e~~~l~~~~~~le~~~~~~---~~  313 (718)
                      .+.++++....++.++...-+.+..++......|..++..+...   .+=...|....-.+++++..|+..-..+   ++
T Consensus       400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee  479 (1243)
T KOG0971|consen  400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEE  479 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433333444444444444444333311   1111112222223333333333211111   12


Q ss_pred             HHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          314 LEEEIDGKIED-ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQ  391 (718)
Q Consensus       314 le~~l~~~~~~-~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~e  391 (718)
                      +.+.+..-..+ -.+|++++..+...+.++..++..-+    ...-+....|......+.+|+..+.++..+....+++
T Consensus       480 ~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq----et~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee  554 (1243)
T KOG0971|consen  480 MNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ----ETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE  554 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            22222222222 25666666666666666665555444    2333445556666666666666666665544444443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.17  E-value=0.0053  Score=61.23  Aligned_cols=6  Identities=33%  Similarity=0.601  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 043740          244 DLVSLT  249 (718)
Q Consensus       244 el~~l~  249 (718)
                      ++..+.
T Consensus        37 e~~~l~   42 (237)
T PF00261_consen   37 EVASLQ   42 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=98.12  E-value=0.025  Score=61.85  Aligned_cols=57  Identities=11%  Similarity=0.060  Sum_probs=34.5

Q ss_pred             hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740           87 IEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAA  143 (718)
Q Consensus        87 ~~~~~~~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~  143 (718)
                      ++.|+-.++..+..-...+.....-|...+..+..++-....+...+++....-..+
T Consensus        90 Ik~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL  146 (786)
T PF05483_consen   90 IKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDL  146 (786)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHH
Confidence            334665555544444445555677777777777777777777766666554444444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=0.059  Score=61.34  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=34.6

Q ss_pred             hHHHHHhhhhhhhHHHhhccHHHHHHHHHHHHHHHhhhccchHHH
Q 043740          670 TLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDYLK  714 (718)
Q Consensus       670 ~~~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~~~~~~er~~fL~  714 (718)
                      +..++.+.+...-.++.+++.||..|+++|.    ...++-+-|.
T Consensus       950 ~~~el~kkL~~~neelk~ys~VNKkAldQf~----nfseQre~L~  990 (1200)
T KOG0964|consen  950 KSKELMKKLHRCNEELKGYSNVNKKALDQFV----NFSEQRESLK  990 (1200)
T ss_pred             CHHHHHHHHHHHHHHHhhcchhhHHHHHHHH----HHHHHHHHHH
Confidence            4578899999999999999999999999999    6666666554

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.98  E-value=0.056  Score=60.82  Aligned_cols=103  Identities=18%  Similarity=0.412  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          312 KKLEEEIDGKIEDARQSREENDRLLAKISQTEN--ELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLD  389 (718)
Q Consensus       312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~--~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le  389 (718)
                      ..|..++.+-+.+.++..+........+.++-.  ++.+|.++..      ..+.+.|+..+..++..++++...+.-|.
T Consensus       279 a~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmA------EERaesLQ~eve~lkEr~deletdlEILK  352 (1243)
T KOG0971|consen  279 ADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMA------EERAESLQQEVEALKERVDELETDLEILK  352 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555544  3333333332      23445566666666666666666666666


Q ss_pred             HHHHHHhccCc----chHHHHHHHHHHHHHHHHHH
Q 043740          390 SQIAREKGECP----ESRTELEQRNIKLTNKIANQ  420 (718)
Q Consensus       390 ~el~~~~~~~~----~~~~~l~~~~~~L~~e~~~~  420 (718)
                      .++++-.+..+    -....++..+.+|+.-...+
T Consensus       353 aEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL  387 (1243)
T KOG0971|consen  353 AEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL  387 (1243)
T ss_pred             HHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            66655433322    23444555566655544444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.93  E-value=0.041  Score=57.61  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          311 KKKLEEEIDGKIEDARQSREENDRLLAKISQTENE----LSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKG  386 (718)
Q Consensus       311 ~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~----l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~  386 (718)
                      +..|-+.+......++.|+.++..|...|..+...    ...+...+...+..+...|..+......+..++..+...+.
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~   85 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE   85 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence            34455556666666667777777777777666543    33344444444444444444444444444444444333333


Q ss_pred             HHH
Q 043740          387 QLD  389 (718)
Q Consensus       387 ~le  389 (718)
                      .+.
T Consensus        86 ~~r   88 (312)
T PF00038_consen   86 DLR   88 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.90  E-value=0.082  Score=60.04  Aligned_cols=55  Identities=13%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740          227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK  281 (718)
Q Consensus       227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~  281 (718)
                      ....+..+...|..++..+..+...+..+...-.....++.++......++..+.
T Consensus       103 a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll  157 (569)
T PRK04778        103 AKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLL  157 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555555555555555555555555544443

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.86  E-value=0.1  Score=59.73  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043740          226 QATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEE  279 (718)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e  279 (718)
                      .+...+..+...|..++.+++.....+..++..+.....++..+...+..+..+
T Consensus       174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e  227 (1195)
T KOG4643|consen  174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE  227 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777766666555555555555555555444444444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.85  E-value=0.073  Score=58.10  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          407 EQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTE  464 (718)
Q Consensus       407 ~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~  464 (718)
                      ...+..+..+...+...+...++....+..+...+...+..+...++...-....++.
T Consensus       147 ~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n  204 (546)
T KOG0977|consen  147 LSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQN  204 (546)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555555555555555555555555555555554443333333333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.84  E-value=0.086  Score=58.49  Aligned_cols=15  Identities=13%  Similarity=0.623  Sum_probs=7.3

Q ss_pred             HHHHhhhhhhhHHHh
Q 043740          672 GELENKIKQQDAELL  686 (718)
Q Consensus       672 ~e~~~~l~~lk~~i~  686 (718)
                      ..++..++.++-+|.
T Consensus       617 ~k~eeelqek~~qVm  631 (1265)
T KOG0976|consen  617 DKLEEELQEKECQVM  631 (1265)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            344555555555443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.73  E-value=0.1  Score=56.34  Aligned_cols=66  Identities=15%  Similarity=0.291  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          138 SKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       138 ~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                      ..+..++..+..|+.++.+.+.-+..+......    ....+..+...+..-+.+++.++.+...|..+|
T Consensus       259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~----~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQH----MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666677777777777777776666555    555666666666666666666666666666555

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.73  E-value=0.13  Score=57.53  Aligned_cols=44  Identities=23%  Similarity=0.236  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043740          104 EQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMN  147 (718)
Q Consensus       104 ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~  147 (718)
                      ++..++.++..++..+......+.....++.....-+.++...+
T Consensus        35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kL   78 (522)
T PF05701_consen   35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKL   78 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666666666666666665555555555544444444443

Several sequences in this family are described as being myosin heavy chain-like.

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.67  E-value=0.053  Score=61.99  Aligned_cols=19  Identities=11%  Similarity=0.160  Sum_probs=6.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043740          181 ELEGQVSRLKLELGSLNDQ  199 (718)
Q Consensus       181 ~l~~~i~~l~~~l~~l~~e  199 (718)
                      .++..+..+......+..+
T Consensus       217 ~l~~e~~~l~~~~~~l~~~  235 (562)
T PHA02562        217 RKQNKYDELVEEAKTIKAE  235 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.62  E-value=2.9e-05  Score=90.56  Aligned_cols=31  Identities=13%  Similarity=0.121  Sum_probs=18.6

Q ss_pred             HHHHhhhhhhhHHHhhccHHHHHHHHHHHHH
Q 043740          672 GELENKIKQQDAELLSLGEEKREAIRQLCVF  702 (718)
Q Consensus       672 ~e~~~~l~~lk~~i~~lg~vn~~aIeey~~~  702 (718)
                      .+++..+..+...+.-|-.|--..|.+|..-
T Consensus       609 ~~l~~~~~~~ekr~~RLkevf~~ks~eFr~a  639 (722)
T PF05557_consen  609 AELKAELASAEKRNQRLKEVFKAKSQEFREA  639 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555556566666666666666666633

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.62  E-value=0.4  Score=59.93  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=15.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740          312 KKLEEEIDGKIEDARQSREENDRLLAKISQTE  343 (718)
Q Consensus       312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele  343 (718)
                      ..+....+........++.+.+.|...|..+.
T Consensus       568 ~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~  599 (1486)
T PRK04863        568 ESLSESVSEARERRMALRQQLEQLQARIQRLA  599 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555555555554443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.60  E-value=0.24  Score=56.83  Aligned_cols=17  Identities=29%  Similarity=0.303  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHhhhcCCc
Q 043740            8 IEDQVKKILKLVRSKDN   24 (718)
Q Consensus         8 ~~~~vk~~~~~i~~~~~   24 (718)
                      -++||+.+-.+..+.=+
T Consensus       188 KetKlkEi~~lL~eeI~  204 (1174)
T KOG0933|consen  188 KETKLKEINTLLREEIL  204 (1174)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            35566666666554443

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.55  E-value=0.13  Score=58.86  Aligned_cols=13  Identities=8%  Similarity=-0.005  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHHHH
Q 043740          408 QRNIKLTNKIANQ  420 (718)
Q Consensus       408 ~~~~~L~~e~~~~  420 (718)
                      ..+..+......+
T Consensus       386 ~~l~~~~~~~~~~  398 (562)
T PHA02562        386 DELDKIVKTKSEL  398 (562)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333444333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.54  E-value=0.32  Score=56.78  Aligned_cols=14  Identities=29%  Similarity=0.484  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHhhhc
Q 043740          695 AIRQLCVFIDHQRT  708 (718)
Q Consensus       695 aIeey~~~~~~~~e  708 (718)
                      +.+||.+.-|.|+.
T Consensus      1016 ~LDEFDVFMD~vNR 1029 (1074)
T KOG0250|consen 1016 ALDEFDVFMDMVNR 1029 (1074)
T ss_pred             hhhHHHHHHHHHHH
Confidence            44555544444443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.52  E-value=0.28  Score=55.57  Aligned_cols=85  Identities=19%  Similarity=0.269  Sum_probs=43.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 043740          112 VSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKL  191 (718)
Q Consensus       112 i~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~  191 (718)
                      +.++...|..+....+.  -+|......+......+..+...+..+...+..+....+.    ....+..+...+..++.
T Consensus        77 ~~~ie~~L~~ae~~~~~--~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~----nr~~i~~l~~~y~~lrk  150 (560)
T PF06160_consen   77 LPEIEEQLFEAEEYADK--YRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEK----NREEIEELKEKYRELRK  150 (560)
T ss_pred             hHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            34444444443333222  2344444556666666666666666666666666555544    44455555555555555


Q ss_pred             HHHHHHHHHHH
Q 043740          192 ELGSLNDQKRD  202 (718)
Q Consensus       192 ~l~~l~~e~~~  202 (718)
                      .+-........
T Consensus       151 ~ll~~~~~~G~  161 (560)
T PF06160_consen  151 ELLAHSFSYGP  161 (560)
T ss_pred             HHHHhhhhhch
Confidence            54444444333

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.42  E-value=0.00046  Score=80.63  Aligned_cols=21  Identities=5%  Similarity=0.029  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 043740          368 KAKVDNLQQKLDDMQTKKGQL  388 (718)
Q Consensus       368 ~~~~~~l~~~l~~l~~~~~~l  388 (718)
                      ..+..-+.++++.+...+..+
T Consensus       405 erq~~L~~kE~d~LR~~L~sy  425 (722)
T PF05557_consen  405 ERQKALATKERDYLRAQLKSY  425 (722)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333333333444443333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.36  E-value=0.41  Score=53.71  Aligned_cols=29  Identities=14%  Similarity=0.316  Sum_probs=11.8

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 043740          586 SAKNWVTESNNSKKSLQQQVKSLVQKLDR  614 (718)
Q Consensus       586 ~l~~~l~~l~~~~~~l~~e~~~l~~el~~  614 (718)
                      ....++...+.....+...+.....++..
T Consensus       485 ~A~aqve~ak~se~e~l~kle~~~~e~~~  513 (522)
T PF05701_consen  485 AAMAQVEAAKASEKEILEKLEEAMKEIEE  513 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444443333

Several sequences in this family are described as being myosin heavy chain-like.

>PRK11637 AmiB activator; Provisional

Probab=97.34  E-value=0.34  Score=53.17  Aligned_cols=52  Identities=13%  Similarity=0.139  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 043740          104 EQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD  155 (718)
Q Consensus       104 ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~  155 (718)
                      +|.....++..+...+..+..++..+..++......+......+..+...+.
T Consensus        55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~  106 (428)
T PRK11637         55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID  106 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444333333333333333333333333333333333333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.29  E-value=0.47  Score=52.99  Aligned_cols=45  Identities=13%  Similarity=0.154  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          409 RNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMK  453 (718)
Q Consensus       409 ~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~  453 (718)
                      .++.|......+...+........+...+++.|....++.+.+++
T Consensus       352 k~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid  396 (1265)
T KOG0976|consen  352 KLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID  396 (1265)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444333333333333344444443333333333

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.24  E-value=0.17  Score=47.05  Aligned_cols=80  Identities=15%  Similarity=0.254  Sum_probs=38.9

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          314 LEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA  393 (718)
Q Consensus       314 le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~  393 (718)
                      |.++...+...+....+....|...+..+...+..++..+.. -..+...+.+++....++...-..+-++...++.+-.
T Consensus        20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~-aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q   98 (193)
T PF14662_consen   20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQK-AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ   98 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555666666666666666655532211 1122334444444444444444444444444444443


Q ss_pred             H
Q 043740          394 R  394 (718)
Q Consensus       394 ~  394 (718)
                      .
T Consensus        99 ~   99 (193)
T PF14662_consen   99 S   99 (193)
T ss_pred             H
Confidence            3

>PRK11637 AmiB activator; Provisional

Probab=97.13  E-value=0.39  Score=52.62  Aligned_cols=18  Identities=17%  Similarity=0.106  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 043740          188 RLKLELGSLNDQKRDLEA  205 (718)
Q Consensus       188 ~l~~~l~~l~~e~~~l~~  205 (718)
                      .+..++..+..++..+..
T Consensus        44 ~~~~~l~~l~~qi~~~~~   61 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEK   61 (428)
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            445555555555544443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.09  E-value=0.38  Score=48.26  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          323 EDARQSREENDRLLAKISQTENELSAFR  350 (718)
Q Consensus       323 ~~~~~l~~e~~~l~~~i~ele~~l~~l~  350 (718)
                      ..+..++.++..++..+.++...|..++
T Consensus       221 ~~~~e~~ee~~~~~~elre~~k~ik~l~  248 (294)
T COG1340         221 KKIDELHEEFRNLQNELRELEKKIKALR  248 (294)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555554444444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.05  E-value=0.67  Score=50.37  Aligned_cols=24  Identities=13%  Similarity=0.177  Sum_probs=15.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhh
Q 043740           34 SELVGLINNFHDRYQSLYAHYNLL   57 (718)
Q Consensus        34 ~~l~~~~~~~~~~~~~~~~~~~~~   57 (718)
                      -..+-.|.+|..-+--||-+-|.-
T Consensus        96 ~l~~PS~KdF~~iFkfLY~~Ldp~  119 (581)
T KOG0995|consen   96 LLMKPSVKDFIAIFKFLYGFLDPD  119 (581)
T ss_pred             hcCCCccccHHHHHHHHHhccCCC
Confidence            344556778888777777654433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.05  E-value=1.6  Score=54.69  Aligned_cols=40  Identities=15%  Similarity=0.313  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          349 FRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQL  388 (718)
Q Consensus       349 l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~l  388 (718)
                      +...+...+..+.............++..++.|...+..+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l  598 (1486)
T PRK04863        559 LQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRL  598 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334444444444444444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.03  E-value=1  Score=51.99  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhh---hhHHHHHHH
Q 043740          105 QQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHG---NRASARIKE  181 (718)
Q Consensus       105 i~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~---~~~~~~i~~  181 (718)
                      +.+++.+|..|+..|.....--..|..++......=..+...+..++...+.|+..+..|......+.   ..++.++.+
T Consensus       420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e  499 (697)
T PF09726_consen  420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE  499 (697)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666655555555555444433333334455555555566666665555544333222   234455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 043740          182 LEGQVSRLKLELGSLNDQKR  201 (718)
Q Consensus       182 l~~~i~~l~~~l~~l~~e~~  201 (718)
                      .......++.+|...+..+.
T Consensus       500 E~~~R~~lEkQL~eErk~r~  519 (697)
T PF09726_consen  500 ERRQRASLEKQLQEERKARK  519 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            55555555555544444433

; GO: 0016021 integral to membrane

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.03  E-value=0.24  Score=44.85  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSA  348 (718)
Q Consensus       306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~  348 (718)
                      .+..++.-|++++......+......+.....+...++..+..
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~  119 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKA  119 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            3444444444444444444444444444444444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.03  E-value=0.37  Score=47.20  Aligned_cols=44  Identities=18%  Similarity=0.352  Sum_probs=20.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          312 KKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAV  355 (718)
Q Consensus       312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~  355 (718)
                      ..++.++......+..+..++..+...+..++..+...+..+..
T Consensus       106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~  149 (239)
T COG1579         106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE  149 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444445555555555544444444443333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.98  E-value=0.86  Score=50.40  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 043740          105 QQGVALEVSELRNKLMSTSEEKAALNSEYQ  134 (718)
Q Consensus       105 i~~~~~ei~~l~~~l~~~~~e~~~l~~~~~  134 (718)
                      +..++.+..+...-...+..-+..+-..|+
T Consensus       171 ~~~yE~EREET~qly~~l~~niekMi~aFE  200 (786)
T PF05483_consen  171 MKKYEYEREETRQLYMDLNENIEKMIAAFE  200 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            333444444444444444444443333333

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.97  E-value=0.9  Score=50.52  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          171 HGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELH  222 (718)
Q Consensus       171 ~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~  222 (718)
                      ...++...+..++.++.-.+..+..+...+...+.++.....+|......+.
T Consensus       159 lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~  210 (716)
T KOG4593|consen  159 LRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQ  210 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344666666666666666667777666666666666545555544444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.97  E-value=1  Score=51.09  Aligned_cols=19  Identities=37%  Similarity=0.396  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 043740          522 SYKKTLEQLEESNRLLSSE  540 (718)
Q Consensus       522 ~~~~~~~~L~~e~~~L~~E  540 (718)
                      .+...+.+|+..+-+|..|
T Consensus       432 dl~e~~e~le~~~~ql~~e  450 (617)
T PF15070_consen  432 DLKERVEKLEHRFIQLSGE  450 (617)
T ss_pred             hHHHHHHHHHHHHHHhccC
Confidence            3444455555555555444

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.92  E-value=1.2  Score=51.29  Aligned_cols=22  Identities=9%  Similarity=0.206  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Q 043740          149 SLRDEADERQREISALVKVHES  170 (718)
Q Consensus       149 ~L~~~~~~l~~el~~l~~~~e~  170 (718)
                      .|+.++.+|+.+|........+
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~E  443 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQE  443 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHH
Confidence            4444555555555444444433

; GO: 0016021 integral to membrane

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=1.1  Score=50.23  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK  385 (718)
Q Consensus       306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~  385 (718)
                      .+..+++.-.+.+-........++-++..|..++..+...+.+.+-    .+......|......++-...++..+..++
T Consensus       420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~----~~tt~kt~ie~~~~q~e~~isei~qlqari  495 (1118)
T KOG1029|consen  420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV----DITTQKTEIEEVTKQRELMISEIDQLQARI  495 (1118)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee----ccchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3334444433444444444455555555555555555554444442    222333444445555555555555555555


Q ss_pred             HHHHHHHHH
Q 043740          386 GQLDSQIAR  394 (718)
Q Consensus       386 ~~le~el~~  394 (718)
                      .+++..+..
T Consensus       496 kE~q~kl~~  504 (1118)
T KOG1029|consen  496 KELQEKLQK  504 (1118)
T ss_pred             HHHHHHHHh
Confidence            555444433

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.84  E-value=1.6  Score=51.15  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=14.1

Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHH
Q 043740          626 ISNFEAKLGKQGGDKLNIIKTMSELEKKVGELE  658 (718)
Q Consensus       626 ~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~e  658 (718)
                      ...|......|-.........|.+++.++..-+
T Consensus      1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~ 1723 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNE 1723 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333333334444444444444444444444443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.82  E-value=1.7  Score=51.45  Aligned_cols=27  Identities=11%  Similarity=0.119  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          437 IIKNLEDKIADQQKIMKNQEDTVEKLT  463 (718)
Q Consensus       437 e~~~l~~~i~~l~~~l~~~~~~~~~l~  463 (718)
                      ........+-+++..++........++
T Consensus       750 ~~~~~~~~vl~Lq~~LEqe~~~r~~~~  776 (1317)
T KOG0612|consen  750 SKDQLITEVLKLQSMLEQEISKRLSLQ  776 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            333344444444444443333333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.79  E-value=0.00032  Score=81.77  Aligned_cols=30  Identities=17%  Similarity=0.196  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAAL  129 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l  129 (718)
                      .+.+++.+++..+.+++..+..+..+...|
T Consensus       250 ~L~~el~~~e~~~~d~~~~~e~le~ei~~L  279 (713)
T PF05622_consen  250 RLREELERLEEQRDDLKIELEELEKEIDEL  279 (713)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444444444444444333

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.69  E-value=2  Score=50.44  Aligned_cols=108  Identities=17%  Similarity=0.312  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          175 ASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQE----QATEQVRGLVVQANVMQQDLVSLTS  250 (718)
Q Consensus       175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~~~~----~~~~~~~~l~~~l~~~~~el~~l~~  250 (718)
                      +...+......+..+...+...++.+..+....+.....+......+....    .+..++....+.+...+..+..+..
T Consensus       300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k  379 (1074)
T KOG0250|consen  300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK  379 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444443333333333333333333221    3444444444445555555555554


Q ss_pred             HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 043740          251 QKNELQLLL-KGKTKEISEYLTQLKTLEEELKK  282 (718)
Q Consensus       251 e~~~l~~~l-~~~~~el~~~~~~i~~l~~e~~~  282 (718)
                      .+..+..+. .....++.+....++.|..++..
T Consensus       380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek  412 (1074)
T KOG0250|consen  380 QIADLEKQTNNELGSELEERENKLEQLKKEVEK  412 (1074)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            444444444 33333333333333333333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=96.66  E-value=1.5  Score=48.48  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          174 RASARIKELEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       174 ~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                      .+..++..++..+..+-.+.+.++.+...+...+
T Consensus       406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~el  439 (961)
T KOG4673|consen  406 EYHQRVATLEKKVQALTKERDALRREQKSLKKEL  439 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3555666666665555555555555555444333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.65  E-value=2.1  Score=50.15  Aligned_cols=65  Identities=9%  Similarity=0.160  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISAL  164 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l  164 (718)
                      .+...++.+..+|..+...|...+..+.+....+.-....|..++.....|.....+|...++.+
T Consensus      1229 ~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1229 QLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33334444555555555555555555555444444333444444444444444444444444433

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.62  E-value=0.0005  Score=80.17  Aligned_cols=19  Identities=11%  Similarity=0.202  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 043740           39 LINNFHDRYQSLYAHYNLL   57 (718)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~   57 (718)
                      ++.+|..-|+.+..-|...
T Consensus        68 r~~NLk~l~~~i~~yy~e~   86 (713)
T PF05622_consen   68 RVSNLKKLLRNIKSYYQEE   86 (713)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7899999999999988865

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.61  E-value=1.8  Score=48.90  Aligned_cols=107  Identities=21%  Similarity=0.263  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI  179 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i  179 (718)
                      ....++..++.++.++...+..+..+...+...+.+....+.+.......++..+.-.+.-+.-+.+        ....+
T Consensus       325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d--------~e~ni  396 (594)
T PF05667_consen  325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPD--------AEENI  396 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cHHHH
Confidence            4445566677777777777777777777777777766666666666666666555533333222222        23334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          180 KELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQL  214 (718)
Q Consensus       180 ~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l  214 (718)
                      ..|+..+..-...+..|..+-.....-+..++..|
T Consensus       397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~l  431 (594)
T PF05667_consen  397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRL  431 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            55555555555555555555444443333344433

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=96.60  E-value=1.2  Score=46.84  Aligned_cols=67  Identities=13%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          137 LSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       137 ~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                      ...+..+..+...|+.+...++.-...+....+.    .-..+..+...|..-+.+++.|+.....|..++
T Consensus       294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~----~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~  360 (622)
T COG5185         294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE----WPGKLEKLKSEIELKEEEIKALQSNIDELHKQL  360 (622)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4566677777777777777777777776655544    233333444444444444444444444444433

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.37  E-value=1.3  Score=44.36  Aligned_cols=46  Identities=20%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIAD  447 (718)
Q Consensus       402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~  447 (718)
                      ....+++.+.+|..++.-+..++.++..+...-.+-+..+...+.+
T Consensus       215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d  260 (305)
T PF14915_consen  215 KQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQD  260 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4456778888888888888888888777666555555555555543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=3.3  Score=46.95  Aligned_cols=58  Identities=14%  Similarity=0.161  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 043740           98 HQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEAD  155 (718)
Q Consensus        98 ~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~  155 (718)
                      +.+.+..|..++.++..+++....+.-+...+..+++........+......|+.++.
T Consensus       659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3345555555666666666666666666666666666555555555555555555444

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.96  E-value=0.12  Score=49.90  Aligned_cols=101  Identities=20%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARI  179 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i  179 (718)
                      .+..++..+......+...|..+......+...+......|..+...+..|...+..+..++.......+.    +..++
T Consensus        78 ~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~----l~DE~  153 (194)
T PF08614_consen   78 KLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEI----LQDEL  153 (194)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred             cccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            44444444444444444444444444444444444444444455555555555555544444443333333    34444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          180 KELEGQVSRLKLELGSLNDQKRDLE  204 (718)
Q Consensus       180 ~~l~~~i~~l~~~l~~l~~e~~~l~  204 (718)
                      ..+..++..++..+..+..+-..|-
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=95.89  E-value=6.2  Score=47.92  Aligned_cols=11  Identities=36%  Similarity=0.721  Sum_probs=6.2

Q ss_pred             ccCcchHHHHH
Q 043740          397 GECPESRTELE  407 (718)
Q Consensus       397 ~~~~~~~~~l~  407 (718)
                      ..||-|..++.
T Consensus       458 ~~CPvCg~~l~  468 (908)
T COG0419         458 EKCPVCGQELP  468 (908)
T ss_pred             CCCCCCCCCCC
Confidence            46886654443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=4.4  Score=46.01  Aligned_cols=71  Identities=18%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 043740           95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALV  165 (718)
Q Consensus        95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~  165 (718)
                      .+.+..+...+.++...|.++...++.+......+..+..+....+.........|++..+-|+.++....
T Consensus       649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~  719 (970)
T KOG0946|consen  649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS  719 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            33444555555667777777777777777777777777777777777777777788888888887776433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.86  E-value=1.6  Score=40.85  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          366 ALKAKVDNLQQKLDDMQTKKGQLDSQI  392 (718)
Q Consensus       366 ~l~~~~~~l~~~l~~l~~~~~~le~el  392 (718)
                      .+....+.++....+|......|...+
T Consensus       113 kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen  113 KLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence            333333444444444444444444433

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=95.80  E-value=4.7  Score=45.80  Aligned_cols=54  Identities=19%  Similarity=0.296  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740          228 TEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK  281 (718)
Q Consensus       228 ~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~  281 (718)
                      ...+..+...+..+...+..+..++..+...=.....++..+......++..+.
T Consensus       100 ~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll  153 (560)
T PF06160_consen  100 KQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELL  153 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555544444444444444444444444433

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.72  E-value=3.5  Score=43.83  Aligned_cols=28  Identities=7%  Similarity=0.209  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          366 ALKAKVDNLQQKLDDMQTKKGQLDSQIA  393 (718)
Q Consensus       366 ~l~~~~~~l~~~l~~l~~~~~~le~el~  393 (718)
                      .+...+..-++-+..+.+.+..-+..+.
T Consensus       200 kl~~~~~E~kk~~~~l~~~l~~~q~~l~  227 (420)
T COG4942         200 KLAQLLEERKKTLAQLNSELSADQKKLE  227 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.70  E-value=3.9  Score=44.28  Aligned_cols=59  Identities=17%  Similarity=0.269  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSE  285 (718)
Q Consensus       227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~~~~~  285 (718)
                      ....+......+..++..++..-..+..|....++...++..+...-..+..++.....
T Consensus       102 A~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~  160 (570)
T COG4477         102 AKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRH  160 (570)
T ss_pred             hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44556666777777777777777778888888888888888888888877777665444

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=95.67  E-value=2.7  Score=42.11  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          359 EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKI  431 (718)
Q Consensus       359 ~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~~l~~~~~~L~~e~~~~~~~le~~~~~~  431 (718)
                      .+.+.+......+...-.+.+.-.+....++--+...+.+.......|...+..|...+..+..++..++.+.
T Consensus        88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~  160 (305)
T PF14915_consen   88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF  160 (305)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555554443332223333344444444444444444444433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.54  E-value=3.2  Score=42.16  Aligned_cols=118  Identities=19%  Similarity=0.251  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHH
Q 043740          325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRT  404 (718)
Q Consensus       325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~~~~~  404 (718)
                      ++.+++++..|......+..+..++.+.-..-+.+...++.....++..|..++..........+.+|..+..    .+.
T Consensus       169 lk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Lls----qiv  244 (306)
T PF04849_consen  169 LKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLS----QIV  244 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence            3344444444444444444433333322222223333344444444444444444444444444444444333    334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          405 ELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA  446 (718)
Q Consensus       405 ~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~  446 (718)
                      ++...+..+..++..+...+.........+..++..+.....
T Consensus       245 dlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~  286 (306)
T PF04849_consen  245 DLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA  286 (306)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555666666655555544433334333333333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=95.49  E-value=5.9  Score=44.87  Aligned_cols=36  Identities=11%  Similarity=0.289  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043740          363 QILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGE  398 (718)
Q Consensus       363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~  398 (718)
                      .+..+...+..+..++.........|..++..+...
T Consensus       448 ~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~  483 (594)
T PF05667_consen  448 EIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD  483 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            333444444555555555555566666666665443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.34  E-value=6.8  Score=44.62  Aligned_cols=46  Identities=15%  Similarity=0.269  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 043740          605 VKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSEL  650 (718)
Q Consensus       605 ~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~  650 (718)
                      +..|...+..+-....++..++.+|+.-+-.+.++.+.+...+.=|
T Consensus       416 mekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly  461 (617)
T PF15070_consen  416 MEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLY  461 (617)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccc
Confidence            3344444444444445555555555555555555555555554433

>PRK09039 hypothetical protein; Validated

Probab=95.24  E-value=4.9  Score=42.43  Aligned_cols=19  Identities=21%  Similarity=0.137  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHhhhHHHHHH
Q 043740          109 ALEVSELRNKLMSTSEEKA  127 (718)
Q Consensus       109 ~~ei~~l~~~l~~~~~e~~  127 (718)
                      ..++.....+|..+..++.
T Consensus        45 s~~i~~~~~eL~~L~~qIa   63 (343)
T PRK09039         45 SREISGKDSALDRLNSQIA   63 (343)
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            3334444444433333333

>PRK09039 hypothetical protein; Validated

Probab=95.23  E-value=4.9  Score=42.40  Aligned_cols=10  Identities=20%  Similarity=0.434  Sum_probs=3.7

Q ss_pred             HHHHHHHHHH
Q 043740          363 QILALKAKVD  372 (718)
Q Consensus       363 ~i~~l~~~~~  372 (718)
                      ++..+...++
T Consensus       173 ~i~~L~~~L~  182 (343)
T PRK09039        173 KIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.10  E-value=4.4  Score=41.13  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 043740           98 HQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMN-KSLRDEADERQREISALVKVHESHGNRAS  176 (718)
Q Consensus        98 ~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~-~~L~~~~~~l~~el~~l~~~~e~~~~~~~  176 (718)
                      +..+..+-..+..++...+.....+..++..+....-.+......-+..| ..|-..|..++.+...|...++...    
T Consensus        29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EE----  104 (310)
T PF09755_consen   29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEE----  104 (310)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            33344433344444444444444444444444222222112222222222 4455667777777666543332211    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          177 ARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQ  256 (718)
Q Consensus       177 ~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l~~~~~~l~e~~~~l~~~~~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~  256 (718)
                            +--...|...+..+..++-.++..+..+..-+      +.   .+...|..+..+....+..+..|..++-++.
T Consensus       105 ------E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~------V~---kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlE  169 (310)
T PF09755_consen  105 ------EFLTNDLSRKLNQLRQEKVELENQLEQEQEYL------VN---KLQKKIERLEKEKSAKQEELERLRREKVDLE  169 (310)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHH
Confidence                  11224555666677777776666552111100      00   2344555555555666666667777766666


Q ss_pred             HHHHhHHHHH
Q 043740          257 LLLKGKTKEI  266 (718)
Q Consensus       257 ~~l~~~~~el  266 (718)
                      ..++.-..-+
T Consensus       170 n~LE~EQE~l  179 (310)
T PF09755_consen  170 NTLEQEQEAL  179 (310)
T ss_pred             HHHHHHHHHH
Confidence            6665443333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.97  E-value=11  Score=45.06  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIK  439 (718)
Q Consensus       402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~  439 (718)
                      ..+.+......+..+...+...++..-++...++.+++
T Consensus       743 ~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs  780 (1317)
T KOG0612|consen  743 KLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK  780 (1317)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence            45566666666666666666666654444444444444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=94.94  E-value=2.6  Score=37.72  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          312 KKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFR  350 (718)
Q Consensus       312 ~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~  350 (718)
                      +.+..++...+.+...+...+...+.+|.+++....++.
T Consensus        69 ~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~  107 (140)
T PF10473_consen   69 NQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE  107 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            334444444444555555555555555555555444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.79  E-value=4  Score=39.08  Aligned_cols=28  Identities=18%  Similarity=0.315  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          230 QVRGLVVQANVMQQDLVSLTSQKNELQL  257 (718)
Q Consensus       230 ~~~~l~~~l~~~~~el~~l~~e~~~l~~  257 (718)
                      .|..+.+.+..++..+..+..+...|..
T Consensus        13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~   40 (194)
T PF15619_consen   13 KIKELQNELAELQRKLQELRKENKTLKQ   40 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666666666666666655543

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.68  E-value=8.8  Score=42.52  Aligned_cols=44  Identities=20%  Similarity=0.382  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          338 KISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDM  381 (718)
Q Consensus       338 ~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l  381 (718)
                      .|..+-..+..++..+....+.+..+|..+...+......+..+
T Consensus       293 ~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel  336 (629)
T KOG0963|consen  293 EIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEEL  336 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444443333444444444444444444433333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=94.60  E-value=9.1  Score=42.39  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          326 RQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE  395 (718)
Q Consensus       326 ~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~  395 (718)
                      ..+...+..++..+.....++..+...+.....-....++-.-..+...++.+-.++.++..|..++...
T Consensus       199 ~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~  268 (629)
T KOG0963|consen  199 EELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKA  268 (629)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3344444444444444444444444443333333344444444455555555555555555555555443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.44  E-value=7.2  Score=40.47  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043740           97 AHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREI  161 (718)
Q Consensus        97 ~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el  161 (718)
                      .+..+-.+...+...+..+......+..+++.+..++.........++.-+..|+..-..+..+.
T Consensus        30 k~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~   94 (309)
T PF09728_consen   30 KYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEES   94 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555666677777777777777777766666555544455555555554444444443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=93.75  E-value=15  Score=41.49  Aligned_cols=104  Identities=13%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          402 SRTELEQRNIKLTNKIANQQKIMKNQ--------EDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQI  473 (718)
Q Consensus       402 ~~~~l~~~~~~L~~e~~~~~~~le~~--------~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~  473 (718)
                      ...++..++..|..+...+..++.-.        .........++..+......+...+....+.+..+...+......+
T Consensus       472 ~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l  551 (739)
T PF07111_consen  472 SVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL  551 (739)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34455555566665555555443321        1112222334555555555666666666666666666666666666


Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          474 LGSKTSLQIAERKMTELAEDFRKRLEDNIRVL  505 (718)
Q Consensus       474 ~~~~~~~~~l~~kl~~l~~~~~k~le~~i~~l  505 (718)
                      ..+......+...+......|-+.|...+.++
T Consensus       552 qes~eea~~lR~EL~~QQ~~y~~alqekvsev  583 (739)
T PF07111_consen  552 QESTEEAAELRRELTQQQEVYERALQEKVSEV  583 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555544444444333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=93.57  E-value=17  Score=41.82  Aligned_cols=61  Identities=23%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQRE  160 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~e  160 (718)
                      .+...|..++.++..++..+.....+.+.|.............++.....|+..+.+++-.
T Consensus        31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r   91 (717)
T PF09730_consen   31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR   91 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566688888888888888888888887777777777777776666666666655443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.10  E-value=6.2  Score=35.28  Aligned_cols=68  Identities=22%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI  392 (718)
Q Consensus       325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el  392 (718)
                      +..+..+...++..+..++.........+......|..+-..+...+..+...+.+|..+..-|-..|
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql  128 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL  128 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555444444445555555555555555555555555555544444

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=93.01  E-value=13  Score=38.61  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 043740          325 ARQSREENDRLLAKISQTENELS  347 (718)
Q Consensus       325 ~~~l~~e~~~l~~~i~ele~~l~  347 (718)
                      +..++.....++...+.++.-..
T Consensus       261 lq~lEt~q~~leqeva~le~yyQ  283 (499)
T COG4372         261 LQRLETAQARLEQEVAQLEAYYQ  283 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=93.00  E-value=8.8  Score=36.76  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          229 EQVRGLVVQANVMQQDLVSLTSQKNELQ  256 (718)
Q Consensus       229 ~~~~~l~~~l~~~~~el~~l~~e~~~l~  256 (718)
                      .++..+...+...+.....+...+.+..
T Consensus        68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~   95 (194)
T PF15619_consen   68 EEVRVLRERLRKSQEQERELERKLKDKD   95 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433333333333

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=92.50  E-value=14  Score=37.75  Aligned_cols=25  Identities=28%  Similarity=0.219  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          235 VVQANVMQQDLVSLTSQKNELQLLL  259 (718)
Q Consensus       235 ~~~l~~~~~el~~l~~e~~~l~~~l  259 (718)
                      .+.....+.+|..|..++.++..++
T Consensus       226 ~Ee~~rQQEEIt~LlsqivdlQ~r~  250 (306)
T PF04849_consen  226 TEENRRQQEEITSLLSQIVDLQQRC  250 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.38  E-value=7.8  Score=34.63  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 043740          359 EASAQILALKAKVDNLQQKLD  379 (718)
Q Consensus       359 ~~~~~i~~l~~~~~~l~~~l~  379 (718)
                      .+..++.+|..+-.-|...|+
T Consensus       109 ~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  109 ELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=91.88  E-value=28  Score=39.86  Aligned_cols=55  Identities=27%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 043740          108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREIS  162 (718)
Q Consensus       108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~  162 (718)
                      +..+...|......+....-.+..++..++..+.........+...++.++.+++
T Consensus        53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~e  107 (698)
T KOG0978|consen   53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLE  107 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            3444444444444444444444444444445555554445555555555544443

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.56  E-value=2.2  Score=40.38  Aligned_cols=82  Identities=23%  Similarity=0.283  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 043740          576 RLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVG  655 (718)
Q Consensus       576 ~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~  655 (718)
                      .+.++......++..+..+..++..|..++..++++++..+..+..+......|+....++.++...+...|.++...+.
T Consensus       129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E  208 (290)
T COG4026         129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE  208 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence            45567777888888899999999999999999999999999999999999999999999999999999998888766654


Q ss_pred             HH
Q 043740          656 EL  657 (718)
Q Consensus       656 ~~  657 (718)
                      -.
T Consensus       209 l~  210 (290)
T COG4026         209 LP  210 (290)
T ss_pred             ch
Confidence            44

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=91.40  E-value=14  Score=35.61  Aligned_cols=19  Identities=16%  Similarity=0.172  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043740          332 NDRLLAKISQTENELSAFR  350 (718)
Q Consensus       332 ~~~l~~~i~ele~~l~~l~  350 (718)
                      ...|+..+...+..+.+|.
T Consensus       163 ~~aLqa~lkk~e~~~~SLe  181 (207)
T PF05010_consen  163 LLALQASLKKEEMKVQSLE  181 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444433

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.36  E-value=34  Score=39.85  Aligned_cols=19  Identities=21%  Similarity=0.240  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043740          181 ELEGQVSRLKLELGSLNDQ  199 (718)
Q Consensus       181 ~l~~~i~~l~~~l~~l~~e  199 (718)
                      .++.++..++.++......
T Consensus       266 ~Le~ei~~le~e~~e~~~~  284 (650)
T TIGR03185       266 QLERQLKEIEAARKANRAQ  284 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=91.34  E-value=21  Score=37.45  Aligned_cols=11  Identities=18%  Similarity=0.341  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 043740          148 KSLRDEADERQ  158 (718)
Q Consensus       148 ~~L~~~~~~l~  158 (718)
                      ..|...|.+-.
T Consensus        78 ~EL~~~I~egr   88 (325)
T PF08317_consen   78 RELKKYISEGR   88 (325)
T ss_pred             HHHHHHHHHHH
Confidence            33444333333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.28  E-value=1.8  Score=41.68  Aligned_cols=56  Identities=16%  Similarity=0.202  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 043740          108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISA  163 (718)
Q Consensus       108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~  163 (718)
                      +...+..+...|..+...+..+..++-.....+..+...+......+..+..++..
T Consensus        72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~  127 (194)
T PF08614_consen   72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ  127 (194)
T ss_dssp             ------------------------------------------HHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555544455555555555444555555544444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=90.89  E-value=25  Score=37.56  Aligned_cols=19  Identities=26%  Similarity=0.417  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043740          326 RQSREENDRLLAKISQTEN  344 (718)
Q Consensus       326 ~~l~~e~~~l~~~i~ele~  344 (718)
                      ..|...-..|...|..++.
T Consensus       227 ~eL~~~~~~L~~~Ias~e~  245 (420)
T COG4942         227 EELRANESRLKNEIASAEA  245 (420)
T ss_pred             HHHHhHHHHHHHHHHHHHH
Confidence            3333333344444444443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.76  E-value=19  Score=35.95  Aligned_cols=61  Identities=25%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 043740          106 QGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK  166 (718)
Q Consensus       106 ~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~  166 (718)
                      ...+..+..+......++.+++.|..++..+...+.+...++..++..+..++++|..+.+
T Consensus        34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~   94 (265)
T COG3883          34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE   94 (265)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555555555555555555555555555555555555555554443

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=90.49  E-value=19  Score=35.55  Aligned_cols=28  Identities=18%  Similarity=0.356  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 043740          309 NQKKKLEEEIDGKIEDARQSREENDRLL  336 (718)
Q Consensus       309 ~~~~~le~~l~~~~~~~~~l~~e~~~l~  336 (718)
                      ....+|.+.+...-.++..++.++..|+
T Consensus       162 sk~e~L~ekynkeveerkrle~e~k~lq  189 (307)
T PF10481_consen  162 SKYEELQEKYNKEVEERKRLEAEVKALQ  189 (307)
T ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            3444555555544445555555554444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.30  E-value=51  Score=40.11  Aligned_cols=16  Identities=19%  Similarity=0.300  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHHHHHhh
Q 043740          105 QQGVALEVSELRNKLM  120 (718)
Q Consensus       105 i~~~~~ei~~l~~~l~  120 (718)
                      +..+...+..+...+.
T Consensus       180 ~~~~~~~~e~l~~~~~  195 (908)
T COG0419         180 IKEAKAKIEELEGQLS  195 (908)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3334444444444444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=90.29  E-value=18  Score=34.91  Aligned_cols=44  Identities=16%  Similarity=0.122  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          408 QRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKI  451 (718)
Q Consensus       408 ~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~  451 (718)
                      ..+.++..+...+...+...+...+++......+...+.++...
T Consensus        69 ~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~N  112 (207)
T PF05010_consen   69 AEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKN  112 (207)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555555555555555555555555555555555555443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=90.01  E-value=26  Score=36.34  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043740          619 ESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKV  654 (718)
Q Consensus       619 ~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~  654 (718)
                      +......+..+..++.+++.+...+...+...+..+
T Consensus       239 F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l  274 (309)
T PF09728_consen  239 FETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL  274 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            333333444444444444444444444444433333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=89.83  E-value=44  Score=38.67  Aligned_cols=76  Identities=16%  Similarity=0.224  Sum_probs=34.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 043740          572 DLANRLSKMSDDLASAKNWVTESNNSK-------KSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNII  644 (718)
Q Consensus       572 ~~e~~l~~~~~e~~~l~~~l~~l~~~~-------~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~  644 (718)
                      +|+....-....+..+++.+..++.+.       .-.....+.+..++.+++.++..++.....|..-+.-.....-.+.
T Consensus       630 KYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQQKLaLT  709 (717)
T PF09730_consen  630 KYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQQKLALT  709 (717)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444555555444433       3334445555555555555555555544444333333333333333


Q ss_pred             HHH
Q 043740          645 KTM  647 (718)
Q Consensus       645 ~~l  647 (718)
                      .+|
T Consensus       710 QRL  712 (717)
T PF09730_consen  710 QRL  712 (717)
T ss_pred             HHH
Confidence            333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=89.55  E-value=21  Score=34.67  Aligned_cols=34  Identities=12%  Similarity=0.172  Sum_probs=16.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          172 GNRASARIKELEGQVSRLKLELGSLNDQKRDLEA  205 (718)
Q Consensus       172 ~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~  205 (718)
                      ..++..++..++.+...+......+..+......
T Consensus        47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Ke   80 (333)
T KOG1853|consen   47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKE   80 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444455555555555555555544444433

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=88.73  E-value=24  Score=34.11  Aligned_cols=67  Identities=12%  Similarity=0.129  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          449 QKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQL  515 (718)
Q Consensus       449 ~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~l~~kl~~l~~~~~k~le~~i~~l~~~~~~~~~~  515 (718)
                      ...+......+..+..+...+...+..+..+...+..+....-.++....+...-.|++++..+...
T Consensus        92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~  158 (201)
T PF13851_consen   92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQ  158 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666666666666666666666666665555555444444455444455555444433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.57  E-value=28  Score=37.08  Aligned_cols=95  Identities=16%  Similarity=0.144  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Q 043740          110 LEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRL  189 (718)
Q Consensus       110 ~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l  189 (718)
                      .++...+..+..+..+...+..........-...+.....+...+.++..++....+....+......-...++......
T Consensus       347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~  426 (493)
T KOG0804|consen  347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE  426 (493)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            37777777777777777776665555555555566666777777777777777666555554444333333333333333


Q ss_pred             HHHHHHHHHHHHHHH
Q 043740          190 KLELGSLNDQKRDLE  204 (718)
Q Consensus       190 ~~~l~~l~~e~~~l~  204 (718)
                      +..+......+..|+
T Consensus       427 ~~~~~s~d~~I~dLq  441 (493)
T KOG0804|consen  427 KEALGSKDEKITDLQ  441 (493)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=88.47  E-value=16  Score=31.87  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          227 ATEQVRGLVVQANVMQQDLVSLTSQKNELQLLL  259 (718)
Q Consensus       227 ~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l  259 (718)
                      +...++.+..++..++.++..+......+..++
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei   53 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAERDELREEI   53 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=87.84  E-value=61  Score=37.75  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          320 GKIEDARQSREENDRLLAKISQTENELSAFRRKIA  354 (718)
Q Consensus       320 ~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~  354 (718)
                      .....+..++.++..+..++..+...+.++...+.
T Consensus       491 ~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~  525 (980)
T KOG0980|consen  491 SQAKALESLRQELALLLIELEELQRTLSNLAQSHN  525 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            33344455555556666666666665555554333

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=86.68  E-value=49  Score=35.45  Aligned_cols=18  Identities=17%  Similarity=0.302  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 043740          181 ELEGQVSRLKLELGSLND  198 (718)
Q Consensus       181 ~l~~~i~~l~~~l~~l~~  198 (718)
                      .+-.++..++.+...+..
T Consensus       268 ~i~~~i~~lk~~n~~l~e  285 (622)
T COG5185         268 IINTDIANLKTQNDNLYE  285 (622)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=86.25  E-value=74  Score=37.10  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          175 ASARIKELEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       175 ~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                      ......-.+.++..++..+..+......+...+
T Consensus       415 ~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~  447 (980)
T KOG0980|consen  415 AENKALAAENRYEKLKEKYTELRQEHADLLRKY  447 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666666666666555554433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.06  E-value=17  Score=37.79  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 043740          402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQ  481 (718)
Q Consensus       402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~~~~~~~~~~~~~~~~  481 (718)
                      .+..+...+..+..+...+..++..++.....+..++..+..+...+...-...-...+.+.-++.........+...+.
T Consensus        44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen   44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666677777777777777776667777777777777776665555555666666666666666666666666


Q ss_pred             HHHHHHHHHH
Q 043740          482 IAERKMTELA  491 (718)
Q Consensus       482 ~l~~kl~~l~  491 (718)
                      .....++.+.
T Consensus       124 ~~~~~L~~L~  133 (314)
T PF04111_consen  124 YASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHCHH
T ss_pred             HHHHHHHHHH
Confidence            6666665554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.85  E-value=57  Score=34.59  Aligned_cols=55  Identities=13%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--chHHHHHHHHHHHHHHHHHHH
Q 043740          367 LKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECP--ESRTELEQRNIKLTNKIANQQ  421 (718)
Q Consensus       367 l~~~~~~l~~~l~~l~~~~~~le~el~~~~~~~~--~~~~~l~~~~~~L~~e~~~~~  421 (718)
                      +...+..+...+..+..++..+..+++.-....+  ..+..+...+.+|+.++..+-
T Consensus       292 ~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd  348 (359)
T PF10498_consen  292 ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD  348 (359)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            3333444444444444444444444443322222  344555566666666655443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=84.67  E-value=50  Score=35.04  Aligned_cols=47  Identities=21%  Similarity=0.221  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043740          235 VVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELK  281 (718)
Q Consensus       235 ~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~~~~~i~~l~~e~~  281 (718)
                      ...+..+..-...+..........|.++..++....++|.+.+.-+.
T Consensus       219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN  265 (359)
T PF10498_consen  219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN  265 (359)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444555555555666666666666666666665555444

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.59  E-value=32  Score=31.46  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADER  157 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l  157 (718)
                      .+..++..+...+..|+.++..+..+..............+..+...+...++.+.++
T Consensus        63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl  120 (151)
T PF11559_consen   63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL  120 (151)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444333333333333333333333333333333

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=84.36  E-value=24  Score=29.77  Aligned_cols=48  Identities=23%  Similarity=0.266  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          575 NRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFL  622 (718)
Q Consensus       575 ~~l~~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l  622 (718)
                      ..+..+...+.+.+.....+..+++.|...+..|..+.......+..+
T Consensus        16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL   63 (107)
T PF09304_consen   16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL   63 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555544444444444444444444444444444433333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=83.88  E-value=39  Score=31.86  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 043740          230 QVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEIS  267 (718)
Q Consensus       230 ~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~  267 (718)
                      .+..+...+..+...+.++...-..+..........+.
T Consensus       110 ~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik  147 (205)
T KOG1003|consen  110 QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELK  147 (205)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            33344444444444444444444433333333333333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=83.67  E-value=1.2e+02  Score=37.39  Aligned_cols=27  Identities=15%  Similarity=0.354  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 043740          135 EALSKIQAAENMNKSLRDEADERQREI  161 (718)
Q Consensus       135 ~~~~~l~e~~~~~~~L~~~~~~l~~el  161 (718)
                      +....+..+..+...+.+.+..+...+
T Consensus       265 k~~~~~~~l~~e~~~l~~~~~~l~~~i  291 (1294)
T KOG0962|consen  265 KLLKQVKLLDSEHKNLKKQISRLREKI  291 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            333444444444444444444444443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=82.93  E-value=62  Score=33.49  Aligned_cols=43  Identities=12%  Similarity=0.168  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 043740          226 QATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISE  268 (718)
Q Consensus       226 ~~~~~~~~l~~~l~~~~~el~~l~~e~~~l~~~l~~~~~el~~  268 (718)
                      .+..++..++-.+..+-++.+++..+...+......+..+++.
T Consensus       137 k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~  179 (319)
T PF09789_consen  137 KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY  179 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555566666666666666666555555555555543

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=82.41  E-value=65  Score=33.35  Aligned_cols=34  Identities=35%  Similarity=0.440  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          361 SAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAR  394 (718)
Q Consensus       361 ~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~  394 (718)
                      ..+...|...+..+.+.+.+++..+.-|...+..
T Consensus        78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~  111 (319)
T PF09789_consen   78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLAR  111 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHh
Confidence            3344444444444444444444444444444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=81.04  E-value=1.1e+02  Score=35.79  Aligned_cols=27  Identities=15%  Similarity=0.149  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          234 LVVQANVMQQDLVSLTSQKNELQLLLK  260 (718)
Q Consensus       234 l~~~l~~~~~el~~l~~e~~~l~~~l~  260 (718)
                      ...++..++.++..+......+.++|+
T Consensus       577 Ql~~L~~l~e~~~~l~~~ae~LaeR~e  603 (717)
T PF10168_consen  577 QLKELQELQEERKSLRESAEKLAERYE  603 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444433333333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=80.71  E-value=52  Score=31.08  Aligned_cols=74  Identities=23%  Similarity=0.310  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          308 CNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKK  385 (718)
Q Consensus       308 ~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~  385 (718)
                      .+....|..+++.....+..+......+..+...++..|..+..++.    +...+...+...+..|...++++....
T Consensus       108 Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk----EaE~rAE~aERsVakLeke~DdlE~kl  181 (205)
T KOG1003|consen  108 ESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK----EAETRAEFAERRVAKLEKERDDLEEKL  181 (205)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHcccHHHHHHhh
Confidence            34445556666666666666666666666666666666666664443    333344444455555555555544333

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=80.16  E-value=27  Score=27.56  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=18.1

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          316 EEIDGKIEDARQSREENDRLLAKISQTENELSAFR  350 (718)
Q Consensus       316 ~~l~~~~~~~~~l~~e~~~l~~~i~ele~~l~~l~  350 (718)
                      ..+..+...+..|..+-..|......+...|..|+
T Consensus         5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr   39 (74)
T PF12329_consen    5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLR   39 (74)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44444555555555555555555555554444444

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	718
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	9e-08
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-04
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 93.0 bits (231), Expect = 2e-19
 Identities = 62/345 (17%), Positives = 135/345 (39%), Gaps = 24/345 (6%)

Query: 124  EEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELE 183
            EE  A + E Q    + Q AE   K L  +  +   E + L +  ++     +    E E
Sbjct: 857  EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAE----TELYAEAE 912

Query: 184  GQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQ 243
                RL  +   L +   ++EA+   E ++  +                 L  +   MQQ
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQ-----------------LQAEKKKMQQ 955

Query: 244  DLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKD 303
             ++ L  Q  E +   +    E      ++K +E+++    +  +KL KER+    RV D
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 304  LESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQ 363
            L +   ++++  + +            E +  L K  ++  EL   +RK+  + ++   Q
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 364  ILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPES---RTELEQRNIKLTNKIANQ 420
            I  L+A++  L+ +L   + +     +++  E  +   +     ELE     L   + ++
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135

Query: 421  QKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEE 465
            +      E +  D  + ++ L+ ++ D       Q++      ++
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 91.8 bits (228), Expect = 4e-19
 Identities = 70/337 (20%), Positives = 139/337 (41%), Gaps = 20/337 (5%)

Query: 104  EQQGVALEVSELRNKLMSTSEEKAALNSEYQ---EALSKIQAAENMNKSLRDEADERQRE 160
            E Q    E+   + +      E   L  ++    E  + +Q        L  EA+E +  
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 161  ISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIE 220
            ++A  +  E   +   ARI+E E +  +L+ E   +  Q  DLE Q   E     +  +E
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 221  LHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEEL 280
                +    +++ +     +M+     LT ++  L+       + +S+  T L   EE+ 
Sbjct: 978  KVTAD---GKIKKMEDDILIMEDQNNKLTKERKLLE-------ERVSDLTTNLAEEEEKA 1027

Query: 281  KKKSEVEHKLLKEREDFLMRVKDLESLCN----QKKKLEEEIDGKIEDARQSREENDRLL 336
            K  +++++K      +  +R+K  E         K+KLE E     E   + + +   L 
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087

Query: 337  AKISQTENELSAFRRKI---AVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA 393
            A++++ E EL A   ++     Q+N A  +I  L++ + +LQ+ L+  +  + + + Q  
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147

Query: 394  REKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDK 430
                E    +TELE        +   +    K+ +DK
Sbjct: 1148 DLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 86.8 bits (215), Expect = 1e-17
 Identities = 46/352 (13%), Positives = 135/352 (38%), Gaps = 38/352 (10%)

Query: 173  NRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELHAQEQATEQVR 232
             R   R ++ E ++  L+ +   L ++K  L+ +   E +   E            ++  
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQE-- 924

Query: 233  GLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLE---EELKKKSEVEHK 289
                           L    +E++  ++ + +   +   + K ++    +L+++ E E  
Sbjct: 925  ---------------LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 290  LLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAF 349
              ++ +       +  +   + KK+E++I    +   +  +E   L  ++S     L+  
Sbjct: 970  ARQKLQ------LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

Query: 350  RRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQR 409
              K        +      ++ +  L+ +L   +  + +L+    + +GE     ++L ++
Sbjct: 1024 EEKA----KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES----SDLHEQ 1075

Query: 410  NIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQA 469
              +L  +IA  +  +  +E+++      +++   +  +  K ++  E  +  L E+ +  
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135

Query: 470  KRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKD 521
            K      +   +  +R ++E  E  +  LED +     + ++    + +  D
Sbjct: 1136 KAA----RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.1 bits (195), Expect = 3e-15
 Identities = 64/351 (18%), Positives = 132/351 (37%), Gaps = 29/351 (8%)

Query: 310  QKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQE---NEASAQILA 366
            + +  +EE+    E  +++  E   L  K +Q   E +  + K+  +     EA    + 
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 367  LKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKN 426
            L AK   L++ L +M+ +  + +           E   +L+    K+  ++ + ++ ++ 
Sbjct: 918  LAAKKQELEEILHEMEARIEEEE-----------ERSQQLQAEKKKMQQQMLDLEEQLEE 966

Query: 427  QEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERK 486
            +E      Q      + KI   +  +   ED   KLT+E K  + ++    T+L   E K
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 487  MTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSE-GQSRK 545
               L    + + E  I  L  R++  E+   E +    K   +LE  +  L  +  + + 
Sbjct: 1027 AKNL-TKLKNKHESMISELEVRLKKEEKSRQELE----KIKRKLEGESSDLHEQIAELQA 1081

Query: 546  MRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQV 605
                L+           + KK E       RL   +    +A   + E  +    LQ+ +
Sbjct: 1082 QIAELK---------AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132

Query: 606  KSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGE 656
            +S     ++ E+Q+  L EE+   + +L           +      K   +
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.7 bits (194), Expect = 4e-15
 Identities = 58/331 (17%), Positives = 135/331 (40%), Gaps = 16/331 (4%)

Query: 369  AKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQE 428
             + +   Q  D+   +  +   +   E  E  +  T+L +    L  K+  + ++    E
Sbjct: 853  TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912

Query: 429  DKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMT 488
            +         + LE+ + + +  ++ +E+  ++L  E K+ ++Q+L  +  L+  E    
Sbjct: 913  EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQ 972

Query: 489  ELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRD 548
            +L  + +   +  I+ +   I + E  +N+      K  + LEE    L++        +
Sbjct: 973  KLQLE-KVTADGKIKKMEDDILIMEDQNNK----LTKERKLLEERVSDLTTNLAEE--EE 1025

Query: 549  MLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSL 608
              +   K     ES++ +LE+      +  K   +L   K    +       L +Q+  L
Sbjct: 1026 KAKNLTKLKNKHESMISELEVR---LKKEEKSRQELEKIK---RKLEGESSDLHEQIAEL 1079

Query: 609  VQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAEL 668
              ++  ++ Q +   EE+    A+L  +   K N +K + ELE  + +L+   ++ ++E 
Sbjct: 1080 QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ---EDLESEK 1136

Query: 669  LTLGELENKIKQQDAELLSLGEEKREAIRQL 699
                + E + +    EL +L  E  + +   
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTT 1167

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 55/271 (20%), Positives = 122/271 (45%), Gaps = 18/271 (6%)

Query: 430  KIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTE 489
            K+  Q++ ++  ++++   ++  +  E  +++L ++  Q   +    K  LQ   +  TE
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE----KNLLQEKLQAETE 906

Query: 490  LAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDM 549
            L  +  +      R+  ++ ++ E LH          +E+ EE ++ L +E   +KM+  
Sbjct: 907  LYAEAEEMRV---RLAAKKQELEEILHEMEAR-----IEEEEERSQQLQAE--KKKMQQQ 956

Query: 550  LEPGNKALLAMESVVKKLEI-NGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSL 608
            +    + L   E+  +KL++       ++ KM DD+   ++   +    +K L+++V  L
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016

Query: 609  VQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAEL 668
               L   EE+   L +  +  E+ + +         K+  ELEK   +LE    +   + 
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ- 1075

Query: 669  LTLGELENKIKQQDAELLSLGEEKREAIRQL 699
              + EL+ +I +  A+L    EE + A+ +L
Sbjct: 1076 --IAELQAQIAELKAQLAKKEEELQAALARL 1104

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 7/199 (3%)

Query: 85   EEIEINTSNFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAE 144
              +E   +      + +      +   ++E   K  + ++ K    S   E   +++  E
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 145  NMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLE 204
               + L     + + E S L +          A+I EL+ Q+++ + EL +   +  D  
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAEL----QAQIAELKAQLAKKEEELQAALARLEDET 1108

Query: 205  AQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTK 264
            +Q     K++ E    +       E +       N  ++    L+ +   L+  L+    
Sbjct: 1109 SQKNNALKKIRELESHI---SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

Query: 265  EISEYLTQLKTLEEELKKK 283
              +       +  ++   K
Sbjct: 1166 TTATQQELRGSDYKDDDDK 1184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.5 bits (208), Expect = 6e-17
 Identities = 89/638 (13%), Positives = 203/638 (31%), Gaps = 163/638 (25%)

Query: 1   MEVSKAEIEDQVKKIL-----KLVRSKDNGITKESKRE---SELVGLINNFHDRYQSLYA 52
           M+    E + Q K IL       V + D    ++  +     E +  I    D       
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 53  HYNLL--KGKSGVRKGKGMNYSPCSSSDSEYYSSEEIEINTSNFRNAHQEISIEQQGVAL 110
            +  L  K +  V                + +  E + IN     +  +    +   +  
Sbjct: 67  LFWTLLSKQEEMV----------------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 111 EVSELRNKLMSTSEEKAALN-------SEYQEALSKIQAAEN-----MN---KS------ 149
              E R++L + ++  A  N        + ++AL +++ A+N     +    K+      
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 150 LRDEADERQREISALVKVH---ESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQ 206
                 + + +     K+      + N     ++ L+  + ++     S +D   +++ +
Sbjct: 171 CLSYKVQCKMDF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 207 FATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQD-------------LV-----SL 248
             +   +L  + +      +       L+V  NV  Q+             L+      +
Sbjct: 227 IHSIQAEL--RRLLKSKPYE-----NCLLVLLNV--QNAKAWNAFNLSCKILLTTRFKQV 277

Query: 249 T-----------SQKNELQLLLKGKTKEI-SEYL-TQLKTLEEELKKKSEVEHKLLKER- 294
           T           S  +    L   + K +  +YL  + + L  E+   +     ++ E  
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 295 EDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRR--K 352
            D L    + + +     KL   I+  +        E  ++        + LS F     
Sbjct: 338 RDGLATWDNWKHV--NCDKLTTIIESSLNV--LEPAEYRKMF-------DRLSVFPPSAH 386

Query: 353 IAVQENEASAQILAL---KAKVDNLQQKLDDMQTK----KGQLDSQIA------REKGEC 399
           I          +L+L        ++   ++ +       K   +S I+        K + 
Sbjct: 387 I-------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 400 PES----RTELEQRNIKLTNKIANQQKIMKNQED-----------KIADQQKIIKNLEDK 444
                  R+ ++  NI    K  +   ++    D           K  +  + +      
Sbjct: 440 ENEYALHRSIVDHYNIP---KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 445 IAD----QQKIMK-----NQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAEDFR 495
             D    +QKI       N   ++    ++ K  K  I  +       ER +  +  DF 
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY---ERLVNAI-LDFL 552

Query: 496 KRLEDN-IRVLFRRI-QVAEQLHNETKDSYKKTLEQLE 531
            ++E+N I   +  + ++A  L  E +  +++  +Q++
Sbjct: 553 PKIEENLICSKYTDLLRIA--LMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.1 bits (207), Expect = 9e-17
 Identities = 77/536 (14%), Positives = 175/536 (32%), Gaps = 154/536 (28%)

Query: 248 LTSQKNELQLLLKGKTKEISEYLTQ-------LKTLEEELK---KKSEVEHKL-LKERED 296
           +  +  E Q     + K+I              K +++  K    K E++H +  K+   
Sbjct: 7   MDFETGEHQY----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 297 FLMRVKDLESLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQ 356
             +R+    +L ++++++ ++    +E+  +       L++ I   + + S   R    Q
Sbjct: 63  GTLRL--FWTLLSKQEEMVQKF---VEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 357 ENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQ----RNI- 411
            +           ++ N  Q        + Q   ++          R  L +    +N+ 
Sbjct: 116 RD-----------RLYNDNQVFAKYNVSRLQPYLKL----------RQALLELRPAKNVL 154

Query: 412 --------K--LTNKIANQQKIMKNQEDKI-----------ADQQKIIKNLEDKIADQQK 450
                   K  +   +    K+    + KI               ++++ L  +I     
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 451 IMKNQEDTVEKLTEESKQAKRQILGSK---TSLQI-AERKMTELAEDFRKRLEDNI--RV 504
              +    ++      +   R++L SK     L +    +  +    F      N+  ++
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------NLSCKI 268

Query: 505 LF--RRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKALLAMES 562
           L   R  QV + L      +   T   L+  +  L+   +            K+LL    
Sbjct: 269 LLTTRFKQVTDFL-----SAATTTHISLDHHSMTLT-PDEV-----------KSLLL--- 308

Query: 563 VVKKLEIN-GDLANRLSK------------MSDDLASAKNWVTESNNSKKSLQQQVKSLV 609
             K L+    DL   +              + D LA+  NW  +  N  K L   ++S +
Sbjct: 309 --KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNCDK-LTTIIESSL 363

Query: 610 QKLDRMEEQESFLREEISNFEAKLGKQGGDKLNI-IKTMS---------ELEKKVGELEK 659
             L+  E ++ F  + +S F            +I    +S         ++   V +L K
Sbjct: 364 NVLEPAEYRKMF--DRLSVFP--------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 660 R--IKEQDAE-LLTLGELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQRTDCDY 712
              +++Q  E  +++  +  ++K +     +L   +          +DH      +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRS--------IVDHYNIPKTF 459

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 4e-10
 Identities = 58/378 (15%), Positives = 123/378 (32%), Gaps = 109/378 (28%)

Query: 419 NQQKIMKNQEDKIAD-QQKIIKNLEDK-IADQQK-IMKNQEDTVEKLTEESKQAKRQILG 475
            + +  + + D ++  +   + N + K + D  K I+  +E  ++ +       K  + G
Sbjct: 12  GEHQ-YQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMS----KDAVSG 63

Query: 476 SKTSLQIAERKMTELAEDF-RKRLEDNIRVLFRRIQVAEQLHNETKD------SYKKTLE 528
           +         K  E+ + F  + L  N + L         +  E +        Y +  +
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFL------MSPIKTEQRQPSMMTRMYIEQRD 117

Query: 529 QLEESNRLLSSEGQSR-----KMRDML---EPGN-----------KALLAMESVVKKLEI 569
           +L   N++ +    SR     K+R  L    P             K  +A++ V    ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-VCLSYKV 176

Query: 570 NGDLANRLSKMSDDLASAKNWVTESN-NSKKSLQQQVKSLVQKLDRMEEQESF----LRE 624
                    KM   +     W+   N NS +++ + ++ L+ ++D      S     ++ 
Sbjct: 177 -------QCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 625 EISNFEAKL-----GKQGGDKL---------NIIKTM-------------SELEKKVGEL 657
            I + +A+L      K   + L                               +      
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 658 EKRIK-EQDAELLTLGELEN------KIKQQD--AE-------LLSL-GEEKREAIRQLC 700
              I  +  +  LT  E+++        + QD   E        LS+  E  R+ +    
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-- 343

Query: 701 VFIDH-QRTDCDYLKAEI 717
              D+ +  +CD L   I
Sbjct: 344 --WDNWKHVNCDKLTTII 359

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 37/241 (15%), Positives = 90/241 (37%), Gaps = 16/241 (6%)

Query: 210  EAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEY 269
              +   +  +  H      + VRG + + +  +     +  Q    +++ K + K++   
Sbjct: 853  LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI- 911

Query: 270  LTQLKTLEEELKKKSEVEHKLLKEREDFLMRVKDLESLCNQKKKLEEEIDGKIEDARQSR 329
              + +++E   K    +E+K+++ +     + K+ +SL  +   LE     + E  R   
Sbjct: 912  --EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 330  EENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLD 389
            E       +     N + + + +IA            L+ ++   Q +   ++    +  
Sbjct: 970  ERLRMSEEEAKNATNRVLSLQEEIA-----------KLRKELHQTQTEKKTIEEWADKYK 1018

Query: 390  SQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQ 449
             +  +   E  E  T L+    +L  +I +Q K  +  E       +  K LE  + D++
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK--EITETMEKKLVEETKQLELDLNDER 1076

Query: 450  K 450
             
Sbjct: 1077 L 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 1e-09
 Identities = 39/285 (13%), Positives = 97/285 (34%), Gaps = 23/285 (8%)

Query: 199  QKRDLEAQFATEAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLL 258
             +        T A  + +K   ++   +  + +R   +    +Q  L     +     +L
Sbjct: 806  ARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIA---LQALLRGYLVRNKYQMML 862

Query: 259  LKGKTKEISEYLTQLKTLEEELKKKSEVEHKLLKEREDF----LMRVKDLESLCNQKKKL 314
             + K+  I +++          +    + +     R       L ++K       + KKL
Sbjct: 863  REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKL 922

Query: 315  EEEIDGKIEDARQS----REENDRLLAKISQTENELSAFRRKIAVQENEASA---QILAL 367
               ++ KI   ++      +E   LL K++  E   S    K+            +    
Sbjct: 923  HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982

Query: 368  KAKVDNLQQKLDDMQTKKGQLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQ 427
              +V +LQ+++  ++ +  Q  ++    +    + + E EQ   +L  +    +   +  
Sbjct: 983  TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042

Query: 428  EDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQ 472
              +I DQ K I          + + K   +  ++L  +    + +
Sbjct: 1043 NRRIHDQAKEI---------TETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 13/250 (5%)

Query: 310  QKKKLEEEIDGKIEDARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKA 369
              +K  + +      A Q+      +  K      E  +   +  V+   A         
Sbjct: 830  VVRKRYQCMRDATI-ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888

Query: 370  KVDNLQQKLDDMQTKKGQLDSQI-AREKGECPESRTELEQRNIKLTNKIANQQKIMKNQE 428
             +  LQ     M  K+     +I AR      +    LE + ++L  KI  Q K  K+  
Sbjct: 889  AIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948

Query: 429  DKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMT 488
            +K+ + +       +K+    + ++  E+  +  T      + +I   +  L   + +  
Sbjct: 949  EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008

Query: 489  ELAEDFRK----------RLEDNIRVLFRRIQVAE-QLHNETKDSYKKTLEQLEESNRLL 537
             + E   K           L++   +L    +    ++H++ K+  +   ++L E  + L
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

Query: 538  SSEGQSRKMR 547
              +    ++R
Sbjct: 1069 ELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 40/264 (15%), Positives = 83/264 (31%), Gaps = 26/264 (9%)

Query: 435  QKIIKNLEDKIADQQKIMKNQ--EDTVEKLTEESKQAKRQILGSKTSLQIAERKMTELAE 492
            QK  +    +   Q         +  +      +K            +Q   R       
Sbjct: 823  QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH 882

Query: 493  DFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEP 552
              R            R  +A++   + K   +      +    L   E +  +++  ++ 
Sbjct: 883  YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGL---ENKIMQLQRKIDE 939

Query: 553  GNKALLAMESVVKKLEIN-GDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQK 611
             NK   ++   +  LEI       +L    + L  ++     + N   SLQ+++  L ++
Sbjct: 940  QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999

Query: 612  LDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGELEKRIKEQDAELLTL 671
            L + + ++  + E                    K   E E+ V EL+++      E    
Sbjct: 1000 LHQTQTEKKTIEEWAD-----------------KYKHETEQLVSELKEQNTLLKTE---K 1039

Query: 672  GELENKIKQQDAELLSLGEEKREA 695
             EL  +I  Q  E+    E+K   
Sbjct: 1040 EELNRRIHDQAKEITETMEKKLVE 1063

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 30/228 (13%), Positives = 83/228 (36%), Gaps = 26/228 (11%)

Query: 471  RQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQL 530
            + +  +  +LQ   R      +      E    ++ + ++      +  +    K +  L
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR--TLKAIVYL 893

Query: 531  EESNRLLSSEGQSRKMRDMLEPGNKALLAMESVVKKLEINGDLANRLSKMSDDLASAKNW 590
            +   R + ++ + +K++              SV +  +++  L N++ ++   +      
Sbjct: 894  QCCYRRMMAKRELKKLKI----------EARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943

Query: 591  VTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSEL 650
                     +L+    +  +KL    E+     EE  N   ++                L
Sbjct: 944  YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV--------------LSL 989

Query: 651  EKKVGELEKRIKEQDAELLTLGELENKIKQQDAELLSLGEEKREAIRQ 698
            ++++ +L K + +   E  T+ E  +K K +  +L+S  +E+   ++ 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 4/107 (3%)

Query: 597  SKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGE 656
                L+ ++  L +K+D   ++   L E+++N E     +     + ++ +   E++   
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981

Query: 657  LEKRIKEQDAEL----LTLGELENKIKQQDAELLSLGEEKREAIRQL 699
               R+     E+      L + + + K  +        E  + + +L
Sbjct: 982  ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 42/416 (10%), Positives = 132/416 (31%), Gaps = 2/416 (0%)

Query: 103 IEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREIS 162
           +E     L+     +   +    +  + S+   A   ++ AE   +        R   + 
Sbjct: 310 LEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLD 369

Query: 163 ALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQFATEAKQLGEKNIELH 222
            L +      +   +     E  + +   E  +L++ K  L+   A E+     ++    
Sbjct: 370 HLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQ 429

Query: 223 AQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEYLTQLKTLEEELKK 282
               A E        +  +      +  Q + L  L + + + +      L+T+++   +
Sbjct: 430 IAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLE 489

Query: 283 KSEVEHKLLKEREDFLMRVKDLE--SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKIS 340
            ++         E  +  ++D        + + L    +        + +E   +L   +
Sbjct: 490 YAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHN 549

Query: 341 QTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIAREKGECP 400
           +    +  +   +A      +     +  K ++++Q +        +  ++  + +    
Sbjct: 550 EVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRK 609

Query: 401 ESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVE 460
           +   +       +  K+    +I       + DQ   ++  E  I + +  +   E   +
Sbjct: 610 QFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQ 669

Query: 461 KLTEESKQAKRQILGSKTSLQIAERKMTELAEDFRKRLEDNIRVLFRRIQVAEQLH 516
           ++ E      +    +   +++   ++          +E+ I     +    EQ++
Sbjct: 670 QIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMN 725

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 596 NSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTM----SELE 651
             +  + + ++SL   L ++E + S +++ I   +         K N+I        ++ 
Sbjct: 31  TYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKML 90

Query: 652 KKVGELEKRIKEQDAELLTL----GELENKIKQQDAELLSLGEEKREAIRQLCVFIDHQR 707
           +++ + E  I   D+ +  L         KI     ++  L  + +E  +      D   
Sbjct: 91  EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITG 150

Query: 708 TDCD 711
            DC 
Sbjct: 151 KDCQ 154

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 26/253 (10%), Positives = 80/253 (31%), Gaps = 16/253 (6%)

Query: 441  LEDKIADQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQI---AERKMTELAEDFRKR 497
            L  +      + +  E       +++    R    S  S+Q    A ++  +  +  + +
Sbjct: 762  LGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQ 821

Query: 498  LEDNIRVLFRRIQVAEQLHNETKDSYKKTLEQLEESNRLLSSEGQSRKMRDMLEPGNKAL 557
                +  ++  +Q   +L           L   E  +   + E   ++  + L    K  
Sbjct: 822  EVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQ 881

Query: 558  LAMESVVKKLEINGDLANRLSKMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEE 617
              +  +++K              +  +    N   E+ +S  ++Q ++K+L       + 
Sbjct: 882  KKIAVLLQKYN-RILKKLENWATTKSVYLGSN---ETGDSITAVQAKLKNLEAFDGECQS 937

Query: 618  QESFLREEISNFEAKLGKQGGDKLN---------IIKTMSELEKKVGELEKRIKEQDAEL 668
             E     ++ +  A+L +   + +            +  + ++      +  +  +   L
Sbjct: 938  LEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL 997

Query: 669  LTLGELENKIKQQ 681
              + +L +     
Sbjct: 998  QKIEDLHHHHHHH 1010

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 7/174 (4%)

Query: 210 EAKQLGEKNIELHAQEQATEQVRGLVVQANVMQQDLVSLTSQKNELQLLLKGKTKEISEY 269
              +L ++   +        ++       + +++                K     + +Y
Sbjct: 827 TKLRLIKREPFVAPAGLTPNEID---STWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 883

Query: 270 LTQLKTLEEELKKKSEVEHKLLKEREDFLMR--VKDLESLCNQKKKLEEEIDGKIEDARQ 327
              LK LE     KS              ++  +K+LE+   + + LE + +  +     
Sbjct: 884 NRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILA 943

Query: 328 SREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDM 381
              E +        TE + + F ++    ++ A      L A+++ LQ+ ++D+
Sbjct: 944 QLTELNYNGVP-ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK-IEDL 995

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 12/104 (11%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 387 QLDSQIAREKGECPESRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIA 446
           +L + + +++        +L+ R  K ++      + +   ++K+   QK  K+ +  ++
Sbjct: 86  ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILS 145

Query: 447 DQQKIMKNQEDTVEKLTEESKQAKRQILGSKTSLQIAERKMTEL 490
           +    M+   + ++   + +  +  ++L  +  +    +K+ +L
Sbjct: 146 EYNTEMELHYNYIKDNLDNNIPSSLRVL--RAVIDSLHKKIQKL 187

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	718
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.49
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.49
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.25
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.07
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.85
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	96.13
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.89
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.85
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.61
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.49
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.29
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	91.84
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.16
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	91.1
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	91.05
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.38
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	88.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.8
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.75
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	87.15
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.57
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	85.59
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	84.67
3bas_A	89	Myosin heavy chain, striated muscle/general contro	82.79
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.79
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.67
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	82.48
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.34
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	81.16
3bas_A	89	Myosin heavy chain, striated muscle/general contro	80.98

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.04  E-value=2.6e-05  Score=78.65  Aligned_cols=53  Identities=13%  Similarity=0.177  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740          108 VALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQRE  160 (718)
Q Consensus       108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~e  160 (718)
                      +..++..+...+..+......+...+......+..+...+..+...+..+...
T Consensus        11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (284)
T 1c1g_A           11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA   63 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444334333333333333333333333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.04  E-value=2.7e-05  Score=78.47  Aligned_cols=71  Identities=11%  Similarity=0.181  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 043740           95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALV  165 (718)
Q Consensus        95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~  165 (718)
                      ...+..+..++..+...+..+...+..+......+...+......+..+...+..+...+..+...+..+.
T Consensus         5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (284)
T 1c1g_A            5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAE   75 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666666666666666666666666666666666666666666666666666655554433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.49  E-value=2.7e-07  Score=111.90  Aligned_cols=61  Identities=26%  Similarity=0.240  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 043740          100 EISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQRE  160 (718)
Q Consensus       100 ~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~e  160 (718)
                      .+...+..++..+.++...+..+..++..+...+......+......+..+...+..+...
T Consensus       868 el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~  928 (1184)
T 1i84_S          868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI  928 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444445555555555555544444444443333333333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.49  E-value=2.9e-07  Score=111.58  Aligned_cols=25  Identities=12%  Similarity=0.383  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          369 AKVDNLQQKLDDMQTKKGQLDSQIA  393 (718)
Q Consensus       369 ~~~~~l~~~l~~l~~~~~~le~el~  393 (718)
                      ..+..+...+..+...+..+..++.
T Consensus      1109 ~~~~~le~~l~~Le~eie~L~eeLe 1133 (1184)
T 1i84_S         1109 SQKNNALKKIRELESHISDLQEDLE 1133 (1184)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.25  E-value=0.11  Score=47.39  Aligned_cols=69  Identities=10%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          139 KIQAAENMNKSLRDEADERQREISALVKVHESHGNRASARIKELEGQVSRLKLELGSLNDQKRDLEAQF  207 (718)
Q Consensus       139 ~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e~~~~~~~~~i~~l~~~i~~l~~~l~~l~~e~~~l~~~l  207 (718)
                      .+.-+......+...+..++.++..+...-.++..++...+..++.....+...+..+..+.......+
T Consensus        11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~   79 (189)
T 2v71_A           11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL   79 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555556666666777777777666666666777777777777777777777777766655444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.07  E-value=0.26  Score=48.36  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          363 QILALKAKVDNLQQKLDDMQTKKGQLDSQIAR  394 (718)
Q Consensus       363 ~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~  394 (718)
                      .+.++...+..+...+..+...+...+..+..
T Consensus        54 ~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~   85 (256)
T 3na7_A           54 EKLALKLQVSKNEQTLQDTNAKIASIQKKMSE   85 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444444445555555555555555554443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.85  E-value=0.27  Score=44.89  Aligned_cols=65  Identities=12%  Similarity=0.074  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          402 SRTELEQRNIKLTNKIANQQKIMKNQEDKIADQQKIIKNLEDKIADQQKIMKNQEDTVEKLTEES  466 (718)
Q Consensus       402 ~~~~l~~~~~~L~~e~~~~~~~le~~~~~~~~l~~e~~~l~~~i~~l~~~l~~~~~~~~~l~~e~  466 (718)
                      .++.+...+..|......+...+..++..+.++..........+.++...+...-....-|..++
T Consensus        89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El  153 (189)
T 2v71_A           89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESEL  153 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556666666666666666666666666655666666666555554444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=96.13  E-value=0.51  Score=40.76  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Q 043740           93 NFRNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVKVHE  169 (718)
Q Consensus        93 ~~~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~~~e  169 (718)
                      .....+..+...+.+......++......+..++..|..+++.....+.........|......|...+..+....+
T Consensus        17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle   93 (129)
T 2fxo_A           17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE   93 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555666666667777777788888888888888888877777777777777777666666666665544433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.89  E-value=12  Score=49.43  Aligned_cols=56  Identities=13%  Similarity=0.150  Sum_probs=32.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 043740          111 EVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISALVK  166 (718)
Q Consensus       111 ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l~~  166 (718)
                      -|.....-+.....+.......+..=+.+|.+....+..|+..+...+..+..-..
T Consensus      1900 li~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ 1955 (3245)
T 3vkg_A         1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNE 1955 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555666666666666666666666666554433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.85  E-value=24  Score=46.67  Aligned_cols=22  Identities=0%  Similarity=-0.115  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHhHhHHHHH
Q 043740          462 LTEESKQAKRQILGSKTSLQIA  483 (718)
Q Consensus       462 l~~e~~~~~~~~~~~~~~~~~l  483 (718)
                      ....+......+..+..+....
T Consensus      2068 ~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A         2068 VKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccH
Confidence            3333333333333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.61  E-value=5.3  Score=35.52  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043740          364 ILALKAKVDNLQQKLDDMQTKKGQLDSQIAREK  396 (718)
Q Consensus       364 i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~~  396 (718)
                      +.++...+..+......+..++..|+..+...+
T Consensus        50 ~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr   82 (168)
T 3o0z_A           50 NRELQERNRILENSKSQTDKDYYQLQAILEAER   82 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444455555555555554443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.49  E-value=5.5  Score=35.41  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHH
Q 043740          106 QGVALEVSELRNKLMSTSEEKAAL  129 (718)
Q Consensus       106 ~~~~~ei~~l~~~l~~~~~e~~~l  129 (718)
                      ..++.++.++...|..-.+-...+
T Consensus         9 ~~LekQL~E~n~kLk~EsE~~~rl   32 (168)
T 3o0z_A            9 SQLQKQLEEANDLLRTESDTAVRL   32 (168)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHH
Confidence            335555555555555444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.29  E-value=4.5  Score=48.11  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          325 ARQSREENDRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS  390 (718)
Q Consensus       325 ~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~  390 (718)
                      +..+.+++..+...+..+..+...+++.+.....++...+..+......|++.+++++..+...+.
T Consensus       986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444443333344445555555555555555555544444433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.84  E-value=2.6  Score=36.27  Aligned_cols=36  Identities=17%  Similarity=0.375  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE  395 (718)
Q Consensus       360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~  395 (718)
                      ....|..+...+..|..++..+.+.+..|+..+...
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~   69 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA   69 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            344555666666666666666666666666655554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.16  E-value=5  Score=47.67  Aligned_cols=10  Identities=20%  Similarity=0.305  Sum_probs=3.6

Q ss_pred             HHHHHHHHHH
Q 043740          334 RLLAKISQTE  343 (718)
Q Consensus       334 ~l~~~i~ele  343 (718)
                      .|+..+..++
T Consensus       988 ~L~~e~~~l~  997 (1080)
T 2dfs_A          988 SLQEEIAKLR  997 (1080)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=91.10  E-value=5.7  Score=32.75  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          333 DRLLAKISQTENELSAFRRKIAVQENEASAQILALKAKVDNLQQKLDDMQTKKGQLDS  390 (718)
Q Consensus       333 ~~l~~~i~ele~~l~~l~~~~~~~~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~  390 (718)
                      ..|+.+...+..++..++.++.....+....+..|+..+..+......+...+..|+-
T Consensus         6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq   63 (111)
T 2v66_B            6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ   63 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555556666666666666655555555555544

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=91.05  E-value=3  Score=36.00  Aligned_cols=36  Identities=19%  Similarity=0.376  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          360 ASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIARE  395 (718)
Q Consensus       360 ~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~~~  395 (718)
                      ....|..+...+..|..++..+.+.+..|+..+...
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~   71 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEET   71 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            334555566666666666666666666666655544

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=88.62  E-value=8.2  Score=31.81  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          357 ENEASAQILALKAKVDNLQQKLDDMQTKKGQLDSQIA  393 (718)
Q Consensus       357 ~~~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el~  393 (718)
                      ..+...++..|...+...++.+.++..........+.
T Consensus        40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq   76 (112)
T 1x79_B           40 SEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ   76 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344456666666666666666676666666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.80  E-value=9.9  Score=42.09  Aligned_cols=9  Identities=22%  Similarity=0.202  Sum_probs=3.2

Q ss_pred             HHHHHHHHH
Q 043740          406 LEQRNIKLT  414 (718)
Q Consensus       406 l~~~~~~L~  414 (718)
                      +......+.
T Consensus       507 l~~~~~~~~  515 (597)
T 3oja_B          507 LNKVFTHLK  515 (597)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.75  E-value=10  Score=30.92  Aligned_cols=68  Identities=12%  Similarity=0.126  Sum_probs=32.1

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 043740          590 WVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGEL  657 (718)
Q Consensus       590 ~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~  657 (718)
                      .+..+..+.+........+...+.........+...+..|..++..++.+++.+...|.+....+...
T Consensus        10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~   77 (101)
T 3u1c_A           10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444455555555555555555555555555444444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=87.15  E-value=8.5  Score=33.34  Aligned_cols=27  Identities=15%  Similarity=0.083  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 043740          108 VALEVSELRNKLMSTSEEKAALNSEYQ  134 (718)
Q Consensus       108 ~~~ei~~l~~~l~~~~~e~~~l~~~~~  134 (718)
                      +..++..+...+..+..+...+..++-
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~   99 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELI   99 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444433333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.57  E-value=9.5  Score=30.01  Aligned_cols=71  Identities=18%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          322 IEDARQSREENDRLLAKISQTENELSAFRRKIAVQEN---EASAQILALKAKVDNLQQKLDDMQTKKGQLDSQI  392 (718)
Q Consensus       322 ~~~~~~l~~e~~~l~~~i~ele~~l~~l~~~~~~~~~---~~~~~i~~l~~~~~~l~~~l~~l~~~~~~le~el  392 (718)
                      +.++..+..+...+...+.-+...+..++.+|+....   .+.+.+..+++.++.+....-+|+..+..|..++
T Consensus         6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl   79 (86)
T 3swk_A            6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI   79 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555555555554332   2333333444444444444444444444444433

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=85.59  E-value=13  Score=30.18  Aligned_cols=70  Identities=14%  Similarity=0.145  Sum_probs=34.5

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHH
Q 043740          588 KNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSELEKKVGEL  657 (718)
Q Consensus       588 ~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e~~~~~~~~  657 (718)
                      +..+..+..+.+........+...+.........+...+..+..++..++.+++.+...+......+...
T Consensus         8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~   77 (101)
T 3u59_A            8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444555555555555555555555555555555555555555544444443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=84.67  E-value=14  Score=29.56  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=16.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 043740          313 KLEEEIDGKIEDARQSREENDRLLAKISQTE  343 (718)
Q Consensus       313 ~le~~l~~~~~~~~~l~~e~~~l~~~i~ele  343 (718)
                      .|-++++.....++.|+.+...|..++..+.
T Consensus        13 ~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~   43 (93)
T 3s4r_A           13 ELNDRFANLIDKVRFLEQQNKILLAELEQLK   43 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444455555555556666665655555443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=82.79  E-value=16  Score=28.90  Aligned_cols=63  Identities=14%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 043740           95 RNAHQEISIEQQGVALEVSELRNKLMSTSEEKAALNSEYQEALSKIQAAENMNKSLRDEADERQREISAL  164 (718)
Q Consensus        95 ~~~~~~~~~ei~~~~~ei~~l~~~l~~~~~e~~~l~~~~~~~~~~l~e~~~~~~~L~~~~~~l~~el~~l  164 (718)
                      ...+..+.+.+.+......++......+..++..|..+       +.+.......|......|+..+..+
T Consensus        20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~eLE~~l~el   82 (89)
T 3bas_A           20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYHLENEVARL   82 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555555556666666666666666544       4444444444444444444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.79  E-value=13  Score=32.17  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 043740          579 KMSDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDK  640 (718)
Q Consensus       579 ~~~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~  640 (718)
                      .+......+...+..+..+...+..++..+...+..+...+..+..++..|+.++.++++.+
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444445555555555555555555555555555555555555554444

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=82.48  E-value=18  Score=29.38  Aligned_cols=39  Identities=13%  Similarity=0.171  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          306 SLCNQKKKLEEEIDGKIEDARQSREENDRLLAKISQTEN  344 (718)
Q Consensus       306 ~~~~~~~~le~~l~~~~~~~~~l~~e~~~l~~~i~ele~  344 (718)
                      -++.++.-...++...+..+..+..++..|...+..+..
T Consensus        66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~  104 (110)
T 2v4h_A           66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR  104 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence            344444444455555555555555555555555554443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.34  E-value=17  Score=28.98  Aligned_cols=65  Identities=11%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHHhHH
Q 043740          593 ESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE-LEKKVGEL  657 (718)
Q Consensus       593 ~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e-~~~~~~~~  657 (718)
                      .+......+...+..+..++..+...+..-.......+.....++.+++.+...|.+ .+.-+..+
T Consensus         9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a   74 (97)
T 2eqb_B            9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA   74 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444455555566666666666666666677777788888888888888887 66666665

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=81.16  E-value=17  Score=28.13  Aligned_cols=45  Identities=13%  Similarity=0.189  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 043740          605 VKSLVQKLDRMEEQESFLREEISNFEAKLGKQGGDKLNIIKTMSE  649 (718)
Q Consensus       605 ~~~l~~el~~~~~~~~~l~~~~~~le~~~~~le~e~~~~~~~l~e  649 (718)
                      ...+...+.........+...+..+..++..++.+++.+...+..
T Consensus        22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~   66 (81)
T 1ic2_A           22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333344444444444444444444433

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=80.98  E-value=19  Score=28.49  Aligned_cols=49  Identities=14%  Similarity=0.247  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043740          581 SDDLASAKNWVTESNNSKKSLQQQVKSLVQKLDRMEEQESFLREEISNF  629 (718)
Q Consensus       581 ~~e~~~l~~~l~~l~~~~~~l~~e~~~l~~el~~~~~~~~~l~~~~~~l  629 (718)
                      ..++..++..+......+..+......+..+...+..++..+......|
T Consensus        20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L   68 (89)
T 3bas_A           20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEEL   68 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3333344444433333334444444444444444433333333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00