Citrus Sinensis ID: 043742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccccccccccccccccccEEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccEEEEEEEHcccHHHHHHHHHHHHcccccccccEccccHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGFRFPGVIHAKKIlrkypynrpqsatitaevpkGYLAVYVGENEMKRFMIPVSYLIQSSFQDLlteeefgfdhpmggltipcneDIFIDLISRLKKQ
Flexible Loop (DISEMBL)
mgfrfpgvihakkilrkypynrpqsatitaevpkgYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ
Low Complexity Region (SEG)
MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ
Disordered region (IsUnstruct)
***RFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLIS*****
Disordered Region (DISOPRED)
*GFR***VI**************************YLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRLK**
Disordered Region (DISEMBL)
MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ
Disordered Region (DISPRO)
*GFRFPGVIHAKKILRKYPYNR******TAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLTEEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.918	0.978	0.58	4e-24
P33080	92	Auxin-induced protein X10	no	no	0.897	0.956	0.581	5e-24
P33081	82	Auxin-induced protein 15A	no	no	0.816	0.975	0.581	7e-23
P33083	90	Auxin-induced protein 6B	no	no	0.897	0.977	0.551	4e-22
P33079	93	Auxin-induced protein 10A	no	no	0.918	0.967	0.515	8e-22
P33082	82	Auxin-induced protein X15	no	no	0.734	0.878	0.588	1e-21

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 71/100 (71%), Gaps = 10/100 (10%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG+       RK    R ++++   + PKGYLAVYVGEN MKRF+IPVS+L Q  
Sbjct: 1  MGFRLPGI-------RKTLSARNEASSKVLDAPKGYLAVYVGEN-MKRFVIPVSHLNQPL 52

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ 98
          FQDLL+  EEEFG+DHPMGGLTIPC+ED+F  + S L  Q
Sbjct: 53 FQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 69/98 (70%), Gaps = 10/98 (10%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG+       RK      Q+++ + EVPKGYL VYVG+ +M+RF+IPVSYL Q S
Sbjct: 1  MGFRLPGI-------RKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPS 52

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
          FQDLL   EEEFG+DHPMGGLTIPC ED F+ + S L 
Sbjct: 53 FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 67/98 (68%), Gaps = 18/98 (18%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG+  A K                A+ PKGYLAVYVGE ++KRF+IPVSYL Q S
Sbjct: 1  MGFRLPGIRKASK---------------AADAPKGYLAVYVGE-KLKRFVIPVSYLNQPS 44

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
          FQDLL+  EEEFG+DHPMGGLTIPC+ED+F  + S L 
Sbjct: 45 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 70/98 (71%), Gaps = 10/98 (10%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG+       RK  ++  Q+++   +V KGYLAVYVGE +M+RF+IPVSYL + S
Sbjct: 1  MGFRLPGI-------RKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPS 52

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
          FQDLL+  EEEFG+ HP GGLTIPC+ED+F  + S L 
Sbjct: 53 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 9/99 (9%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR  G++      R+  +   Q+A+   +VPKGY AVYVG ++M+RF IPVSYL + S
Sbjct: 1  MGFRIAGIV------RRTSFYTTQAASKRVDVPKGYAAVYVG-DKMRRFTIPVSYLNEPS 53

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLKK 97
          FQ+LL+  EEEFG+DHPMGGLTIPC E+ F+++ + L +
Sbjct: 54 FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLNE 92

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 18/90 (20%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG+               + A+   + PKGYLAVYVGE +MKRF+IPVSY+ Q S
Sbjct: 1  MGFRLPGI---------------RKASNAVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPS 44

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIF 88
          FQDLLT  EEEFG+DHPMGGLTIPC+E++F
Sbjct: 45 FQDLLTQAEEEFGYDHPMGGLTIPCSEEVF 74

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
225430953	103	PREDICTED: auxin-induced protein X10A-li	0.969	0.922	0.63	6e-28
356529817	92	PREDICTED: auxin-induced protein 6B-like	0.918	0.978	0.6	3e-26
225430959	103	PREDICTED: auxin-induced protein X10A [V	0.979	0.932	0.603	4e-26
225430955	98	PREDICTED: auxin-induced protein 15A-lik	0.948	0.948	0.602	5e-26
356544445	92	PREDICTED: auxin-induced protein 6B-like	0.897	0.956	0.612	1e-25
225458026	104	PREDICTED: auxin-induced protein X10A [V	0.979	0.923	0.6	1e-25
224080528	99	SAUR family protein [Populus trichocarpa	0.897	0.888	0.622	2e-25
15234825	99	SAUR-like auxin-responsive protein [Arab	0.969	0.959	0.632	2e-25
2924327	99	hypothetical protein [Malus x domestica]	0.969	0.959	0.577	3e-25
224103293	99	SAUR family protein [Populus trichocarpa	0.979	0.969	0.585	6e-25

>gi|225430953|ref|XP_002271562.1| PREDICTED: auxin-induced protein X10A-like [Vitis vinifera]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 78/100 (78%), Gaps = 5/100 (5%)

Query: 1   MGFRFPGVIHAKKILR-KYPYNRPQSATI--TAEVPKGYLAVYVGENEMKRFMIPVSYLI 57
           MGFR P ++HA++IL+ +    R QS+ +  TAEVPKG+ AVYVGE E KRF++P+SYL 
Sbjct: 1   MGFRLPSMVHARQILKLQSLLTRSQSSILATTAEVPKGHFAVYVGEAEKKRFVVPISYLN 60

Query: 58  QSSFQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRL 95
             SFQ LL+  EEEFGF+HPMGG+TIPCNED FIDL SRL
Sbjct: 61  NPSFQKLLSHAEEEFGFNHPMGGVTIPCNEDAFIDLTSRL 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529817|ref|XP_003533484.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 76/100 (76%), Gaps = 10/100 (10%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFRFP +       R+  +N  Q+A+ + +VPKGY+AVYVGEN M+RF+IP+SYL Q S
Sbjct: 1  MGFRFPAI-------RRASFNANQAASKSVQVPKGYVAVYVGEN-MRRFVIPISYLNQPS 52

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLKKQ 98
          FQDLL+  EEEFG+DHPMGGLTIPC+ED+F    SRL +Q
Sbjct: 53 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQQTTSRLNEQ 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430959|ref|XP_002271660.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 5/101 (4%)

Query: 1   MGFRFPGVIHAKKILRKYPY-NRPQSA--TITAEVPKGYLAVYVGENEMKRFMIPVSYLI 57
           MGFRFP +I AK+IL+ +   +R QS+     AEVPKG+ AVYVGE E KRF++P+SYL 
Sbjct: 1   MGFRFPSIIQAKQILKLHSLLSRGQSSISATAAEVPKGHFAVYVGEAEKKRFVVPISYLN 60

Query: 58  QSSFQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
             SFQ LL+  EEEFGF+HPMGG+TIPC ED FI+L SR  
Sbjct: 61  NPSFQKLLSHAEEEFGFNHPMGGVTIPCKEDAFINLTSRFN 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430955|ref|XP_002271594.1| PREDICTED: auxin-induced protein 15A-like [Vitis vinifera]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 5/98 (5%)

Query: 1  MGFRFPGVIHAKKILRKY-PYNRPQSATIT--AEVPKGYLAVYVGENEMKRFMIPVSYLI 57
          MG RFP ++ AK+IL+ + P+ R QS+  T  +EVPKG+ AVYVGE + KRF++P+SYL 
Sbjct: 1  MGIRFPSIVQAKQILKLHSPFTRSQSSISTEASEVPKGHFAVYVGEGQRKRFVVPLSYLN 60

Query: 58 QSSFQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLIS 93
            SFQ LL+  EEEFGF+HPMGG+TIPCNED FID+ S
Sbjct: 61 NPSFQKLLSHAEEEFGFNHPMGGVTIPCNEDAFIDITS 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544445|ref|XP_003540661.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 10/98 (10%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG+       R+  +   Q+++   EVPKGYLAVYVGE  MKRF+IP+SYL QSS
Sbjct: 1  MGFRLPGI-------RRASFAENQASSKAVEVPKGYLAVYVGE-RMKRFVIPISYLTQSS 52

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
          FQDLL+  EEEFG+DHPMGGLTIPC ED+F ++ SRL 
Sbjct: 53 FQDLLSRAEEEFGYDHPMGGLTIPCREDVFQNITSRLN 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458026|ref|XP_002280277.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera] gi|302142635|emb|CBI19838.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 74/100 (74%), Gaps = 4/100 (4%)

Query: 1   MGFRFP--GVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQ 58
           MGFR P   V H K+I++  P  + + A  TA+VPKGY AVYVGEN+ +RF++P+SYL  
Sbjct: 1   MGFRLPLMMVSHVKQIMKLQPLAKNRLAAATADVPKGYFAVYVGENQKQRFVVPISYLNH 60

Query: 59  SSFQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
            SFQDLL+  EEEFGFDHPMGGLTIPC    FI+L SRL+
Sbjct: 61  PSFQDLLSQAEEEFGFDHPMGGLTIPCKIANFIELTSRLQ 100

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080528|ref|XP_002306151.1| SAUR family protein [Populus trichocarpa] gi|222849115|gb|EEE86662.1| SAUR family protein [Populus trichocarpa]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 72/90 (80%), Gaps = 2/90 (2%)

Query: 11 AKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EE 68
          AK+ILR+  +N  + A+ + +VPKG+LAVY+GE E KRF++PVSYL + SFQDLLT  EE
Sbjct: 10 AKQILRRSVWNASKPASRSLDVPKGFLAVYIGEREKKRFVVPVSYLNEPSFQDLLTKAEE 69

Query: 69 EFGFDHPMGGLTIPCNEDIFIDLISRLKKQ 98
          EFGF+HPMGGLTIPC ED FID++S L + 
Sbjct: 70 EFGFNHPMGGLTIPCREDKFIDVLSSLSRS 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234825|ref|NP_195595.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|4490336|emb|CAB38618.1| auxin-induced protein-like [Arabidopsis thaliana] gi|7270867|emb|CAB80547.1| auxin-induced protein-like [Arabidopsis thaliana] gi|62321722|dbj|BAD95347.1| auxin-induced protein - like [Arabidopsis thaliana] gi|88010988|gb|ABD38883.1| At4g38840 [Arabidopsis thaliana] gi|225898869|dbj|BAH30565.1| hypothetical protein [Arabidopsis thaliana] gi|332661582|gb|AEE86982.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 74/98 (75%), Gaps = 3/98 (3%)

Query: 1  MGFRFPGVIHA-KKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQS 59
          M  R P V+ + K+ILR+       S++ + +VPKGYLAVYVGE  MKRF++PVSYL Q 
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 60 SFQDLL--TEEEFGFDHPMGGLTIPCNEDIFIDLISRL 95
          SFQDLL   EEEFGFDHPMGGLTIPC+E+IFIDL SR 
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRF 98

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2924327|emb|CAB07785.1| hypothetical protein [Malus x domestica]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          MGFR PG++ AK+ L +   N  Q+A+ T ++PKGY AVY GE + KRF+IP+SYL    
Sbjct: 1  MGFRLPGIVSAKRSLIRSLSNSKQTASKTLDIPKGYFAVYAGERQKKRFVIPISYLNDPL 60

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRL 95
          FQDLL+  EEEFG+DHPMGG+TIPC+E  F+ L SRL
Sbjct: 61 FQDLLSQAEEEFGYDHPMGGITIPCSEYTFLHLTSRL 97

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103293|ref|XP_002312998.1| SAUR family protein [Populus trichocarpa] gi|222849406|gb|EEE86953.1| SAUR family protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 75/99 (75%), Gaps = 3/99 (3%)

Query: 1  MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
          M  R  G + AK+ LR+      ++A+ +++VPKG+LAVYVGE E KRF++PVSYL Q+S
Sbjct: 1  MAIRLLGFL-AKQSLRRPVSCAHKAASKSSDVPKGFLAVYVGETEKKRFVVPVSYLNQAS 59

Query: 61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRLKK 97
          FQDLL+  EEEFGFDHPMGGLTIPC ED F+D+ S L +
Sbjct: 60 FQDLLSKAEEEFGFDHPMGGLTIPCAEDTFLDVTSSLSR 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.959	0.949	0.639	5.7e-27
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.846	0.912	0.565	9e-22
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.836	0.911	0.571	1.5e-21
TAIR|locus:4515103510	89	AT4G38825 "AT4G38825" [Arabido	0.877	0.966	0.567	2.4e-21
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.795	0.866	0.609	3e-21
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.836	0.911	0.604	3e-21
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.734	0.818	0.635	4.9e-21
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.836	0.911	0.560	2.7e-20
TAIR|locus:2047037	86	AT2G21200 "AT2G21200" [Arabido	0.673	0.767	0.676	4.4e-20
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.928	0.928	0.561	7.2e-20

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 62/97 (63%), Positives = 74/97 (76%)

Query:     1 MGFRFPGVIHA-KKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQS 59
             M  R P V+ + K+ILR+       S++ + +VPKGYLAVYVGE  MKRF++PVSYL Q 
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    60 SFQDLL--TEEEFGFDHPMGGLTIPCNEDIFIDLISR 94
             SFQDLL   EEEFGFDHPMGGLTIPC+E+IFIDL SR
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 52/92 (56%), Positives = 68/92 (73%)

Query:     8 VIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT- 66
             ++ AKKIL +       S T  +  PKG+LAVYVGE++ KR+++P+SYL Q SFQ LL+ 
Sbjct:     7 LLGAKKILSR-------STTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSK 59

Query:    67 -EEEFGFDHPMGGLTIPCNEDIFIDLISRLKK 97
              EEEFGFDHPMGGLTIPC ED FI++ SR ++
Sbjct:    60 SEEEFGFDHPMGGLTIPCPEDTFINVTSRFQR 91

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/91 (57%), Positives = 71/91 (78%)

Query:     8 VIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT- 66
             ++ AKKIL +       +A ++A  PKG+LAVYVGE++ KR+++P+SYL Q SFQ LL+ 
Sbjct:     7 LLGAKKILSR------STAAVSA-APKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 59

Query:    67 -EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
              E+EFGFDHPMGGLTIPC+ED FI++ SRL+
Sbjct:    60 SEDEFGFDHPMGGLTIPCHEDTFINVTSRLQ 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:4515103510 AT4G38825 "AT4G38825" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:     1 MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSS 60
             MG  F G++ AKKI         Q  ++ A  PKG+LAVYVGE++MKR+++PVSYL Q S
Sbjct:     1 MGV-FRGLMGAKKIF--------QGRSMAASTPKGFLAVYVGESQMKRYIVPVSYLNQPS 51

Query:    61 FQDLLT--EEEFGFDHPMGGLTIPCNEDIFIDLISRL 95
             FQ LL+  E+EFGFDHPMGGLTIPC  D FI + S+L
Sbjct:    52 FQALLSKSEQEFGFDHPMGGLTIPCPVDTFITVTSQL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 53/87 (60%), Positives = 65/87 (74%)

Query:    11 AKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EE 68
             AKKIL +       SA   +  PKG+LAVYVGE++ KR+++P+SYL Q SFQ LL+  EE
Sbjct:    10 AKKILSR-------SAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEE 62

Query:    69 EFGFDHPMGGLTIPCNEDIFIDLISRL 95
             EFGFDHPMGGLTIPC ED FI++ SRL
Sbjct:    63 EFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 55/91 (60%), Positives = 68/91 (74%)

Query:     8 VIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT- 66
             ++ AKKIL     +R   A   A  PKG+LAVYVGE++ KR+++PVSYL Q SFQ LL+ 
Sbjct:     7 LLGAKKIL-----SRSTGAGSAA--PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSK 59

Query:    67 -EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
              EEEFGFDHPMGGLTIPC ED FI++ SRL+
Sbjct:    60 SEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 90

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 47/74 (63%), Positives = 60/74 (81%)

Query:    25 SATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EEEFGFDHPMGGLTIP 82
             S +  +  PKG+LAVYVGE++ KR+++P+SYL Q SFQ LL+  EEEFGFDHPMGGLTIP
Sbjct:    15 SRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIP 74

Query:    83 CNEDIFIDLISRLK 96
             C ED FI++ SRL+
Sbjct:    75 CPEDTFINVTSRLQ 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 51/91 (56%), Positives = 66/91 (72%)

Query:     8 VIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT- 66
             ++ AKKIL +       S    +  PKG+LAVYVGE++ KR+++P+SYL Q SFQ LL+ 
Sbjct:     7 LLGAKKILSR-------STAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSK 59

Query:    67 -EEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
              EEEFGF HPMGGLTIPC ED FI++ SRL+
Sbjct:    60 SEEEFGFAHPMGGLTIPCPEDTFINVTSRLQ 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047037 AT2G21200 "AT2G21200" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 46/68 (67%), Positives = 55/68 (80%)

Query:    30 AEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EEEFGFDHPMGGLTIPCNEDI 87
             A  PKG+LAVYVGE++ KR+M+PVS+L Q SFQ LL+  EEEFGFDHPMGGLTIPC ED 
Sbjct:    19 ASTPKGFLAVYVGESQKKRYMVPVSFLNQPSFQALLSTAEEEFGFDHPMGGLTIPCPEDT 78

Query:    88 FIDLISRL 95
             F+   S+L
Sbjct:    79 FVAAASQL 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 55/98 (56%), Positives = 64/98 (65%)

Query:     1 MGFRFPGVIHAKKILRKYPYNRPQSATITAEVPKGYLAVYVGENEMKR-FMIPVSYLIQS 59
             M  R   V+ + K L K   +   S+   A +PKG+LAVYVGE   KR F++PV+YL   
Sbjct:     1 MAIRISRVLQSSKQLLK---SLSHSSNNVA-IPKGHLAVYVGEMMQKRRFVVPVTYLSHP 56

Query:    60 SFQDLL--TEEEFGFDHPMGGLTIPCNEDIFIDLISRL 95
              FQ LL   EEEFGFDHPMGGLTIPC E IFIDL SRL
Sbjct:    57 CFQKLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.58	0.9183	0.9782	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	2e-31
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-25
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-22
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-19

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  105 bits (265), Expect = 2e-31
 Identities = 46/101 (45%), Positives = 60/101 (59%), Gaps = 7/101 (6%)

Query: 1  MGFRFPGVIHAKKILRKYPYNR---PQSATITAEVPKGYLAVYVGENEMKRFMIPVSYLI 57
          M  R      AKK +      R     S + +A+VPKG+ AVYVGE E +RF++P+SYL 
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 58 QSSFQDLL--TEEEFGFDHPMGGLTIPCNEDIFIDLISRLK 96
             FQ+LL   EEEFGFD   GGLTIPC+  +F  L+  L+
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 91.0 bits (225), Expect = 2e-25
 Identities = 47/82 (57%), Positives = 63/82 (76%), Gaps = 7/82 (8%)

Query: 21  NRPQSATITAEVPKGYLAVYVGEN---EMKRFMIPVSYLIQSSFQDLLT--EEEFGFDHP 75
           NR  S++ +  VPKG++AVYVGE    E KRF++P+S+L   SF++ L+  EEEFGF+HP
Sbjct: 25  NRTSSSS-SDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHP 83

Query: 76  MGGLTIPCNEDIFIDLI-SRLK 96
           MGGLTIPC E++F+DLI SRL 
Sbjct: 84  MGGLTIPCREEVFLDLIASRLH 105

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 82.9 bits (205), Expect = 3e-22
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 4/68 (5%)

Query: 31  EVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLL--TEEEFGFDHPMGGLTIPCNEDIF 88
           +VPKG+  VYVGEN   R+++P+S+L    FQ LL   EEEFGFDH M GLTIPC E +F
Sbjct: 39  DVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEVVF 96

Query: 89  IDLISRLK 96
             L S ++
Sbjct: 97  RSLTSMIR 104

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 75.9 bits (186), Expect = 1e-19
 Identities = 43/90 (47%), Positives = 60/90 (66%), Gaps = 4/90 (4%)

Query: 8   VIHAKKILRKYPYNRPQSATITAE-VPKGYLAVYVGEN-EMKRFMIPVSYLIQSSFQDLL 65
           +  ++ +  K   + P S+T T+  VPKG++AVYVGE  E KRF++P+SYL    F++ L
Sbjct: 14  IFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFL 73

Query: 66  T--EEEFGFDHPMGGLTIPCNEDIFIDLIS 93
              EEE GF H MGGLTIPC E+ F+ LI+
Sbjct: 74  NRAEEECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	87.19

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.3e-38  Score=220.12  Aligned_cols=94  Identities=43%  Similarity=0.779  Sum_probs=83.3

Q ss_pred             CCcccch----hHHHHHHhhhCCCCCCCCC----cccccCCCCeEEEEecCCcceEEEEEecCcCchHHHHHHh--hhhc
Q 043742            1 MGFRFPG----VIHAKKILRKYPYNRPQSA----TITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EEEF   70 (98)
Q Consensus         1 m~~~~~~----l~~~k~~l~r~~s~~~~~~----~~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~--eeEf   70 (98)
                      ||++...    +.++||+|+||.|.+..++    ..+.+||+||||||||+++ +||+||++|||||+|++||+  ||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~-~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENR-SRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCC-EEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            6766443    6789999999999875432    3677899999999999997 99999999999999999999  9999


Q ss_pred             CCCCCCCceeeeCcHHHHHHHHHHHh
Q 043742           71 GFDHPMGGLTIPCNEDIFIDLISRLK   96 (98)
Q Consensus        71 G~~~~~G~L~IPC~~~~F~~vl~~l~   96 (98)
                      ||+|+ |+|+|||+++.|++++|+|+
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~  104 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMIR  104 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence            99997 89999999999999999983

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=3.6e-38  Score=218.01  Aligned_cols=93  Identities=51%  Similarity=0.951  Sum_probs=81.6

Q ss_pred             CCcccchhHHH-HHHhhhCCCCCC--CCCcccccCCCCeEEEEecC----CcceEEEEEecCcCchHHHHHHh--hhhcC
Q 043742            1 MGFRFPGVIHA-KKILRKYPYNRP--QSATITAEVPKGYLAVYVGE----NEMKRFMIPVSYLIQSSFQDLLT--EEEFG   71 (98)
Q Consensus         1 m~~~~~~l~~~-k~~l~r~~s~~~--~~~~~~~~vpkG~~aVyVG~----e~~~RfvVp~~yL~hP~F~~LL~--eeEfG   71 (98)
                      ||++++.|..+ ||+|+|++....  .+++.+.+|||||||||||+    |+ +||+||++|||||+|++||+  |||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~-kRFVVPv~yL~hP~F~~LL~~AeEEfG   79 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEK-KRFVVPISFLNHPSFKEFLSRAEEEFG   79 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccc-eEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence            99999999966 999999883332  22456779999999999998    34 99999999999999999999  99999


Q ss_pred             CCCCCCceeeeCcHHHHHHHHHH
Q 043742           72 FDHPMGGLTIPCNEDIFIDLISR   94 (98)
Q Consensus        72 ~~~~~G~L~IPC~~~~F~~vl~~   94 (98)
                      |+|++|+|+|||+++.|++++..
T Consensus        80 f~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         80 FNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCCEEeeCCHHHHHHHHHh
Confidence            99955999999999999999863

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.5e-35  Score=200.74  Aligned_cols=94  Identities=45%  Similarity=0.746  Sum_probs=76.2

Q ss_pred             CCcccchhHHHHHHhhhCCCCCCC----CCcccccCCCCeEEEEecCCcceEEEEEecCcCchHHHHHHh--hhhcCCCC
Q 043742            1 MGFRFPGVIHAKKILRKYPYNRPQ----SATITAEVPKGYLAVYVGENEMKRFMIPVSYLIQSSFQDLLT--EEEFGFDH   74 (98)
Q Consensus         1 m~~~~~~l~~~k~~l~r~~s~~~~----~~~~~~~vpkG~~aVyVG~e~~~RfvVp~~yL~hP~F~~LL~--eeEfG~~~   74 (98)
                      |--++..+...++..+++.+....    .++...++|+||||||||+++ +||+||++|||||+|++||+  ||||||++
T Consensus         1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~-~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen    1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEER-RRFVVPVSYLNHPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccc-eEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence            344555566565555554443321    122347899999999999987 99999999999999999999  99999999


Q ss_pred             CCCceeeeCcHHHHHHHHHHHh
Q 043742           75 PMGGLTIPCNEDIFIDLISRLK   96 (98)
Q Consensus        75 ~~G~L~IPC~~~~F~~vl~~l~   96 (98)
                      + |+|+|||+++.|++++|+|+
T Consensus        80 ~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   80 D-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             C-CcEEeeCCHHHHHHHHHHhC
Confidence            7 99999999999999999984

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=1e-34  Score=201.72  Aligned_cols=95  Identities=48%  Similarity=0.840  Sum_probs=77.9

Q ss_pred             CCcccchhHHHHHHhhhCC------CCCC-CCCcccccCCCCeEEEEecCC-cceEEEEEecCcCchHHHHHHh--hhhc
Q 043742            1 MGFRFPGVIHAKKILRKYP------YNRP-QSATITAEVPKGYLAVYVGEN-EMKRFMIPVSYLIQSSFQDLLT--EEEF   70 (98)
Q Consensus         1 m~~~~~~l~~~k~~l~r~~------s~~~-~~~~~~~~vpkG~~aVyVG~e-~~~RfvVp~~yL~hP~F~~LL~--eeEf   70 (98)
                      ||.....+..+||+++..+      +.++ .+.+.+.+|||||+|||||++ ..+||+||++|||||+|++||+  ||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf   80 (108)
T PLN03219          1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC   80 (108)
T ss_pred             CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence            7888888888888876221      1221 223456789999999999983 2399999999999999999999  9999


Q ss_pred             CCCCCCCceeeeCcHHHHHHHHHHH
Q 043742           71 GFDHPMGGLTIPCNEDIFIDLISRL   95 (98)
Q Consensus        71 G~~~~~G~L~IPC~~~~F~~vl~~l   95 (98)
                      ||+|++|+|+|||+++.|+++++.-
T Consensus        81 Gf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         81 GFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            9998669999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=87.19  E-value=0.73  Score=29.54  Aligned_cols=56  Identities=21%  Similarity=0.303  Sum_probs=40.3

Q ss_pred             EEecCCcceEEEEEecCcC-ch--HHHHHHh-hhhcCCCCCCCceeeeCcHHHHHHHHHHHhc
Q 043742           39 VYVGENEMKRFMIPVSYLI-QS--SFQDLLT-EEEFGFDHPMGGLTIPCNEDIFIDLISRLKK   97 (98)
Q Consensus        39 VyVG~e~~~RfvVp~~yL~-hP--~F~~LL~-eeEfG~~~~~G~L~IPC~~~~F~~vl~~l~~   97 (98)
                      +=||.   ++|.++.+-|. +|  .|..+++ +..--+..+.|.+-|-++...|++|+..+..
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~   62 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRT   62 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhh
Confidence            45775   77999998887 54  6888888 4111122234899999999999999998753

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00