Citrus Sinensis ID: 043786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
ELVFESEKAGGSVEGSNLGSKNSKNLTLERKGDGVGGLESKVESSSQVGSGKNLTLEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV
Secondary Structure (PSIPRED)
ccEEEEEcccccccccccccccccccHHHcccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccEEccccccccccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEEEccHHccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccc
Coil and Loop (DISEMBL)
elvfesekaggsvegsnlgsknsknltlerkgdgvggleskvesssqvgsgknltlemegdsgagdngsnsgglgsrgmrIRDKLEKElrpvvlevedisyqhaghagvrgsdgethfNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV
Flexible Loop (DISEMBL)
elvfesekaggsvegsnlgsknsknltlerkgdgvggleskvesssqvgsgKNLTLemegdsgagdngsnsgglgsrgmRIRDKLEKELRPVVLEVEDISyqhaghagvrgsdgETHFNVKIVskefegkslvKRHRLIYDLLQEELQNglhalsivartpsev
Low Complexity Region (SEG)
ELVFESEKAGGSVEGSNLGSKNSKNLTLERKGDGVGGLESKVESSSQVGSGKNLTLEMEgdsgagdngsnsgglgsrgMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV
Disordered region (IsUnstruct)
****************************************************************************************LRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIV*******
Disordered Region (DISOPRED)
*LVF****************************************************************************IRDKLEKELRPVVLEVEDISYQHAGHA*****DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTP***
Disordered Region (DISEMBL)
********************KNSKNLTLERK*******************GKNLTLEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV
Disordered Region (DISPRO)
ELVFESEKAGGSVEGSN**S****N**LERKG***************************GD*GA****S****LGSRGMRIRDKLEKELRPVVLEVEDISYQHA*********GETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ELVFESEKAGGSVEGSNLGSKNSKNLTLERKGDGVGGLESKVESSSQVGSGKNLTLEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q84W65	371	SufE-like protein, chloro	yes	no	0.609	0.269	0.766	3e-40
Q5RCE5	137	BolA-like protein 1 OS=Po	yes	no	0.628	0.751	0.444	2e-15
Q9Y3E2	137	BolA-like protein 1 OS=Ho	yes	no	0.628	0.751	0.435	7e-15
Q9D8S9	137	BolA-like protein 1 OS=Mu	yes	no	0.646	0.773	0.405	1e-14
Q3T138	135	BolA-like protein 1 OS=Bo	yes	no	0.536	0.651	0.483	1e-14
Q3E793	110	Uncharacterized bolA-like	yes	no	0.396	0.590	0.514	1e-13
Q86KD0	114	BolA-like protein DDB_G02	no	no	0.475	0.684	0.440	2e-12
Q12238	102	UV-induced protein uvi31	yes	no	0.536	0.862	0.439	2e-12
P0ABE4	105	Protein BolA OS=Shigella	yes	no	0.487	0.761	0.438	1e-11
P0ABE2	105	Protein BolA OS=Escherich	N/A	no	0.487	0.761	0.438	1e-11

>sp|Q84W65|SUFE_ARATH SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2

 Score =  164 bits (414), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 91/103 (88%), Gaps = 3/103 (2%)

Query: 65  GDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS---DGETHFNVK 121
            ++GSN   LGSRGMRIR+KLEKEL PV LEVED+SYQHAGHA VRGS   DGETHFN++
Sbjct: 269 SESGSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLR 328

Query: 122 IVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV 164
           IVS  F+GKSLVKRHRLIYDLLQ+EL++GLHALSIVA+TP+EV
Sbjct: 329 IVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RCE5|BOLA1_PONAB BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/108 (44%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 56  LEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGE 115
           + M G        + SG +G     IR KLE+ L P VLE+ +   +  GHA   GS  E
Sbjct: 11  VSMAGRVCLCQGSAGSGAVGPVEAAIRTKLEQALSPEVLELRN---ESGGHAVPPGS--E 65

Query: 116 THFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           THF V +VS  FEG S ++RHRLI+  L EEL   +HAL+I ARTP++
Sbjct: 66  THFRVAVVSSRFEGLSPLQRHRLIHAALAEELAGPVHALAIQARTPAQ 113

Pongo abelii (taxid: 9601)

>sp|Q9Y3E2|BOLA1_HUMAN BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 5/108 (4%)

Query: 56  LEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGE 115
           + M G        + SG +G     IR KLE+ L P VLE+ +   +  GHA   GS  E
Sbjct: 11  VSMAGRVCLCQGSAGSGAIGPVEAAIRTKLEEALSPEVLELRN---ESGGHAVPPGS--E 65

Query: 116 THFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           THF V +VS  FEG S ++RHRL++  L EEL   +HAL+I ARTP++
Sbjct: 66  THFRVAVVSSRFEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQ 113

Homo sapiens (taxid: 9606)

>sp|Q9D8S9|BOLA1_MOUSE BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 5/111 (4%)

Query: 53  NLTLEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS 112
              + M   S      + S   G     IR KLE+ L P VLE+ + S  HA  AG    
Sbjct: 8   QCMVSMATRSCVSRGSAGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG---- 63

Query: 113 DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
             ETHF V +VS  FEG S ++RHRL+++ L EEL   +HAL+I A+TP++
Sbjct: 64  -SETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQ 113

Mus musculus (taxid: 10090)

>sp|Q3T138|BOLA1_BOVIN BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 71  SGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGK 130
           SG +G     IR KLE+ L P VLE+ +   +  GHA   GS  ETHF V +VS  FEG 
Sbjct: 26  SGVIGPVEAAIRTKLEQALNPEVLELRN---ESGGHAVPPGS--ETHFRVAVVSSRFEGL 80

Query: 131 SLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           S ++RHRL++  L EEL   +HAL+I ARTP++
Sbjct: 81  SPLQRHRLVHAALSEELAGPVHALAIQARTPAQ 113

Bos taurus (taxid: 9913)

>sp|Q3E793|YA044_YEAST Uncharacterized bolA-like protein YAL044W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAL044W-A PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 51/68 (75%), Gaps = 3/68 (4%)

Query: 100 SYQHAGHAGVRGS-DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEEL--QNGLHALSI 156
           S++H GHAGV+G+   ETHF +++VSK+FEG  L +RHR++Y LLQ+E+   NG+HAL +
Sbjct: 38  SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQL 97

Query: 157 VARTPSEV 164
             +TP E 
Sbjct: 98  SLKTPQEY 105

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q86KD0|Y7416_DICDI BolA-like protein DDB_G0274169 OS=Dictyostelium discoideum GN=DDB_G0274169 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 58/84 (69%), Gaps = 6/84 (7%)

Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           I++ L KEL P+ LE+ + SY H    G      E+HF VKIVS++FE  S++++HRL+ 
Sbjct: 11  IKELLTKELNPINLEIINESYMHNVPKG-----SESHFKVKIVSEKFETLSMIEQHRLVN 65

Query: 141 DLLQEELQNG-LHALSIVARTPSE 163
           ++L+  + NG +HALSI +RTP++
Sbjct: 66  EILKNFIGNGKIHALSITSRTPTQ 89

Dictyostelium discoideum (taxid: 44689)

>sp|Q12238|UVI31_SCHPO UV-induced protein uvi31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uvi31 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 77  RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRG--SDGETHFNVKIVSKEFEGKSLVK 134
           R  RI   L + L+   + + + SY+H+ H  ++G     ETHF ++IVS EF G S V 
Sbjct: 11  RQDRIYKTLSEALKTDKITLYNDSYKHSHHIAMKGVPDTNETHFRLEIVSPEFSGMSRVA 70

Query: 135 RHRLIYDLLQEELQNGLHALSIV-ARTPSEV 164
           RHRL+Y LL++E   GLHAL I  ++TP EV
Sbjct: 71  RHRLVYGLLKDEFDGGLHALQITSSKTPDEV 101

May be involved in control of cell division, especially during the resumption from cell cycle arrest.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0ABE4|BOLA_SHIFL Protein BolA OS=Shigella flexneri GN=bolA PE=3 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 79  MRIRDKLEKELR----PVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVK 134
           M IR+++E++LR    PV LEV D SY+H   AG      E+HF V +VS  F G+  + 
Sbjct: 1   MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLN 55

Query: 135 RHRLIYDLLQEELQNGLHALSIVARTPSE 163
           RHR+IY  L EEL   +HAL++   T  E
Sbjct: 56  RHRMIYSTLAEELSTTVHALALHTYTIKE 84

Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.

Shigella flexneri (taxid: 623)

>sp|P0ABE2|BOLA_ECOLI Protein BolA OS=Escherichia coli (strain K12) GN=bolA PE=1 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 79  MRIRDKLEKELR----PVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVK 134
           M IR+++E++LR    PV LEV D SY+H   AG      E+HF V +VS  F G+  + 
Sbjct: 1   MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLN 55

Query: 135 RHRLIYDLLQEELQNGLHALSIVARTPSE 163
           RHR+IY  L EEL   +HAL++   T  E
Sbjct: 56  RHRMIYSTLAEELSTTVHALALHTYTIKE 84

Plays an important role in general stress response (heat shock, acidic stress, oxidative stress, carbon-starvation stress and osmotic shock). Involved in morphogenetic pathway. Has a role in the induction of the expression of dacA (PBP5), dacC (PBP6) and ampC.

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
224122328	371	predicted protein [Populus trichocarpa]	0.920	0.407	0.611	3e-44
224056857	310	predicted protein [Populus trichocarpa]	0.957	0.506	0.614	5e-42
297799356	368	ATSUFE/CPSUFE/EMB1374 [Arabidopsis lyrat	0.743	0.331	0.687	1e-39
225463503	378	PREDICTED: sufE-like protein, chloroplas	0.810	0.351	0.634	3e-39
147803488	378	hypothetical protein VITISV_001965 [Viti	0.810	0.351	0.634	3e-39
358345665	328	SufE-like protein [Medicago truncatula]	0.798	0.399	0.651	4e-39
15236742	371	SufE-like protein [Arabidopsis thaliana]	0.609	0.269	0.766	2e-38
449444014	342	PREDICTED: sufE-like protein, chloroplas	0.817	0.391	0.629	2e-38
28393578	371	unknown protein [Arabidopsis thaliana]	0.609	0.269	0.766	2e-38
255557192	304	UV-induced protein uvi31, putative [Rici	0.926	0.5	0.554	8e-36

>gi|224122328|ref|XP_002330596.1| predicted protein [Populus trichocarpa] gi|222872154|gb|EEF09285.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 123/180 (68%), Gaps = 29/180 (16%)

Query: 1   ELVFESEKAGGSVEGSNLGSKNSKNLTLERKGDGVGGLESKVE---SSSQVG---SGKNL 54
           EL  E+EK  G VE S LG  N  N             E KVE   S+  VG   SG N 
Sbjct: 202 ELYLEAEKGSGVVESSKLGGGNGDN-------------EGKVEDLGSNGDVGVETSGDNF 248

Query: 55  T--LEMEGDSGAGDN--------GSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHA 104
              L  +G +  G+         GSNS GLGSRG+RIR+KLEKEL PV LEV+DISYQHA
Sbjct: 249 VKGLSFDGKTDGGETSGLEGSEKGSNSEGLGSRGLRIREKLEKELSPVELEVDDISYQHA 308

Query: 105 GHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV 164
           GHAGVRGSDGETHFNVK+VSKEF GKSLVKRHRLIY+LLQEEL++GLHALSIVA+TP EV
Sbjct: 309 GHAGVRGSDGETHFNVKVVSKEFGGKSLVKRHRLIYNLLQEELESGLHALSIVAKTPDEV 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056857|ref|XP_002299058.1| predicted protein [Populus trichocarpa] gi|222846316|gb|EEE83863.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 124/174 (71%), Gaps = 17/174 (9%)

Query: 1   ELVFESEKAGGSVEGSNL----GSKNSKNLTLERKGDGVGGLESKVESSSQVGSGKNLTL 56
           EL  E+EK  G+VE S L    G    K   L   GD VG     VESS    S K L+ 
Sbjct: 141 ELYMEAEKGSGAVESSKLRDGSGENEGKIENLGSNGD-VG-----VESSGD-NSVKGLSF 193

Query: 57  EMEGDSGAG------DNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVR 110
           + + D G G      + GSNS  LGSRG+R+R+KLE+EL PV LEVEDISYQHAGHAGVR
Sbjct: 194 DAKIDGGEGLGPEGSEKGSNSKALGSRGIRVREKLERELSPVELEVEDISYQHAGHAGVR 253

Query: 111 GSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV 164
           GS+GETHFNVK+VSKEF+GKSLVKRHRLIY+LLQ+ELQ+GLHALSIVA+T  EV
Sbjct: 254 GSNGETHFNVKVVSKEFDGKSLVKRHRLIYNLLQDELQSGLHALSIVAKTLDEV 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799356|ref|XP_002867562.1| ATSUFE/CPSUFE/EMB1374 [Arabidopsis lyrata subsp. lyrata] gi|297313398|gb|EFH43821.1| ATSUFE/CPSUFE/EMB1374 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 104/128 (81%), Gaps = 6/128 (4%)

Query: 40  SKVESSSQVGSGKNLTLEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDI 99
            +V+S S+ G  ++L  E   DS   D+GSN   LGSRGMRIR++LE+EL PV LEVED+
Sbjct: 244 PEVDSESKPGLVEDLGTEKIDDS---DSGSNGVALGSRGMRIRERLEEELNPVELEVEDV 300

Query: 100 SYQHAGHAGVRGS---DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSI 156
           SYQHAGHA VRGS   DGETHFN++IVS  F+GKSLVKRHRLIYDLLQEEL++GLHALSI
Sbjct: 301 SYQHAGHAAVRGSAGDDGETHFNLRIVSDVFQGKSLVKRHRLIYDLLQEELKSGLHALSI 360

Query: 157 VARTPSEV 164
           VA+TPSEV
Sbjct: 361 VAKTPSEV 368

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463503|ref|XP_002263467.1| PREDICTED: sufE-like protein, chloroplastic-like [Vitis vinifera]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 108/145 (74%), Gaps = 12/145 (8%)

Query: 32  GDGVGGLESKVES-------SSQVG----SGKNLTLEMEG-DSGAGDNGSNSGGLGSRGM 79
           G G  GL S VE        SS++G    S   L+ E+ G DS  G   ++   LGSRG 
Sbjct: 231 GTGETGLNSNVEKPVRTSNLSSKIGGIEDSVVRLSSEVSGRDSNLGGGATSETALGSRGG 290

Query: 80  RIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLI 139
           RI++ LE+ L P+ L VEDISYQHAGHAGVRGSDGETHFN+K+VS+EFEGKSLVKRHR++
Sbjct: 291 RIKEILERALSPIELLVEDISYQHAGHAGVRGSDGETHFNLKVVSEEFEGKSLVKRHRVV 350

Query: 140 YDLLQEELQNGLHALSIVARTPSEV 164
           YDLLQEELQNGLHALSIVA+TPSEV
Sbjct: 351 YDLLQEELQNGLHALSIVAKTPSEV 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147803488|emb|CAN70939.1| hypothetical protein VITISV_001965 [Vitis vinifera]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 108/145 (74%), Gaps = 12/145 (8%)

Query: 32  GDGVGGLESKVES-------SSQVG----SGKNLTLEMEG-DSGAGDNGSNSGGLGSRGM 79
           G G  GL S VE        SS++G    S   L+ E+ G DS  G   ++   LGSRG 
Sbjct: 231 GTGETGLNSNVEKPVRXLNLSSKIGGIEDSVVRLSSEVSGRDSNLGGGATSETALGSRGG 290

Query: 80  RIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLI 139
           RI++ LE+ L P+ L VEDISYQHAGHAGVRGSDGETHFN+K+VS+EFEGKSLVKRHR++
Sbjct: 291 RIKEILERALSPIELLVEDISYQHAGHAGVRGSDGETHFNLKVVSEEFEGKSLVKRHRVV 350

Query: 140 YDLLQEELQNGLHALSIVARTPSEV 164
           YDLLQEELQNGLHALSIVA+TPSEV
Sbjct: 351 YDLLQEELQNGLHALSIVAKTPSEV 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345665|ref|XP_003636896.1| SufE-like protein [Medicago truncatula] gi|355502831|gb|AES84034.1| SufE-like protein [Medicago truncatula]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 104/132 (78%), Gaps = 1/132 (0%)

Query: 33  DGVGGLESKVESSSQVGSGKNLTLEMEGDSGAGDNGSNSGGLGSRGMRIRDKLEKELRPV 92
           D +G  + K +S  +  SG ++T  +  D G+  +  N   LG RG RI+ KLEKEL+P+
Sbjct: 195 DSIGNSDLKNDSFVENSSGPSVTPSLGVDFGSEVDDENVE-LGGRGKRIKKKLEKELQPI 253

Query: 93  VLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH 152
            LEVED+SYQHAGHAGVRGSDGETHFNVK+VSKEF+GKSLVKRHRLIY LLQ+EL +GLH
Sbjct: 254 ELEVEDVSYQHAGHAGVRGSDGETHFNVKVVSKEFQGKSLVKRHRLIYSLLQDELDSGLH 313

Query: 153 ALSIVARTPSEV 164
           ALSIVA+TPSEV
Sbjct: 314 ALSIVAKTPSEV 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236742|ref|NP_194380.1| SufE-like protein [Arabidopsis thaliana] gi|115502843|sp|Q84W65.2|SUFE_ARATH RecName: Full=SufE-like protein, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 1374; Flags: Precursor gi|2982456|emb|CAA18220.1| putative protein [Arabidopsis thaliana] gi|7269502|emb|CAB79505.1| putative protein [Arabidopsis thaliana] gi|21536824|gb|AAM61156.1| unknown [Arabidopsis thaliana] gi|60543325|gb|AAX22260.1| At4g26500 [Arabidopsis thaliana] gi|332659810|gb|AEE85210.1| SufE-like protein [Arabidopsis thaliana]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 91/103 (88%), Gaps = 3/103 (2%)

Query: 65  GDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS---DGETHFNVK 121
            ++GSN   LGSRGMRIR+KLEKEL PV LEVED+SYQHAGHA VRGS   DGETHFN++
Sbjct: 269 SESGSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLR 328

Query: 122 IVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV 164
           IVS  F+GKSLVKRHRLIYDLLQ+EL++GLHALSIVA+TP+EV
Sbjct: 329 IVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444014|ref|XP_004139770.1| PREDICTED: sufE-like protein, chloroplastic-like [Cucumis sativus] gi|449482614|ref|XP_004156349.1| PREDICTED: sufE-like protein, chloroplastic-like [Cucumis sativus]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 105/135 (77%), Gaps = 1/135 (0%)

Query: 31  KGDGVGGLESKVESSSQVGSGKNLTLEMEGDSGAGDNGSNSGG-LGSRGMRIRDKLEKEL 89
           KG+G     S+ + S++    ++ T +   DS  GD GS S   LGSRG RI++ LE+EL
Sbjct: 208 KGNGSAVSSSQTDDSAEKVKPESNTEKSVVDSKLGDKGSQSSDVLGSRGKRIKEILEREL 267

Query: 90  RPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQN 149
            PV L VEDISYQHAGHAGVRG+DGETHFN+K+VSKEFEGKSLVKRHRL+Y+LLQ+ELQ+
Sbjct: 268 NPVELYVEDISYQHAGHAGVRGNDGETHFNLKVVSKEFEGKSLVKRHRLVYNLLQDELQS 327

Query: 150 GLHALSIVARTPSEV 164
           GLHALSI A+TP E+
Sbjct: 328 GLHALSISAKTPDEI 342

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393578|gb|AAO42209.1| unknown protein [Arabidopsis thaliana]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 91/103 (88%), Gaps = 3/103 (2%)

Query: 65  GDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS---DGETHFNVK 121
            ++GSN   LGSRGMRIR+KLEKEL PV LEVED+SYQHAGHA VRGS   DGETHFN++
Sbjct: 269 SESGSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLR 328

Query: 122 IVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV 164
           IVS  F+GKSLVKRHRLIYDLLQ+EL++GLHALSIVA+TP+EV
Sbjct: 329 IVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557192|ref|XP_002519627.1| UV-induced protein uvi31, putative [Ricinus communis] gi|223541217|gb|EEF42772.1| UV-induced protein uvi31, putative [Ricinus communis]

 Score =  155 bits (391), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 119/173 (68%), Gaps = 21/173 (12%)

Query: 1   ELVFESEKAGGSVEGSNLGSK----NSKNLTLERKGDGVGGLESKVESSSQVGSGKNLTL 56
           EL   +EK  GS  G+ + S     NS NL       G GG     + +S +GS ++L  
Sbjct: 141 ELYVGAEKGTGSGSGNKIDSTQNEVNSSNL-------GKGG-----DQNSSIGSNEDLGT 188

Query: 57  EMEGDSGAGDNG----SNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS 112
            +E  + A   G    ++   LGSRG RI++ LEKEL P+ LEVED+SYQHAGHAGVRG+
Sbjct: 189 SLESKAAASSGGSGGSNDLDNLGSRGKRIKEILEKELSPIELEVEDVSYQHAGHAGVRGN 248

Query: 113 D-GETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSEV 164
           D GETHFN+K+VSKEF+GKSLVKRHRLIY LLQEELQ GLHALSIVA+TP+E+
Sbjct: 249 DDGETHFNLKVVSKEFDGKSLVKRHRLIYGLLQEELQGGLHALSIVAKTPTEI 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:2131488	371	CPSUFE "chloroplast sulfur E"	0.524	0.231	0.797	1.1e-32
TAIR|locus:505006189	160	AT1G55805 "AT1G55805" [Arabido	0.512	0.525	0.729	3.8e-31
CGD|CAL0001596	121	orf19.5016 [Candida albicans (	0.512	0.694	0.471	3.2e-17
UNIPROTKB|Q5AKW1	121	CaO19.12483 "Putative uncharac	0.512	0.694	0.471	3.2e-17
SGD|S000007586	110	YAL044W-A "Putative protein of	0.390	0.581	0.522	5.4e-15
MGI|MGI:1916418	137	Bola1 "bolA-like 1 (E. coli)"	0.475	0.569	0.506	2.3e-14
RGD|1310586	137	Bola1 "bolA homolog 1 (E. coli	0.475	0.569	0.506	2.3e-14
UNIPROTKB|Q3T138	135	BOLA1 "BolA-like protein 1" [B	0.475	0.577	0.518	3e-14
UNIPROTKB|F1SDF8	137	BOLA1 "Uncharacterized protein	0.475	0.569	0.518	3.8e-14
UNIPROTKB|Q9Y3E2	137	BOLA1 "BolA-like protein 1" [H	0.475	0.569	0.518	6.2e-14

TAIR|locus:2131488 CPSUFE "chloroplast sulfur E" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 71/89 (79%), Positives = 81/89 (91%)

Query:    79 MRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS---DGETHFNVKIVSKEFEGKSLVKR 135
             MRIR+KLEKEL PV LEVED+SYQHAGHA VRGS   DGETHFN++IVS  F+GKSLVKR
Sbjct:   283 MRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLVKR 342

Query:   136 HRLIYDLLQEELQNGLHALSIVARTPSEV 164
             HRLIYDLLQ+EL++GLHALSIVA+TP+EV
Sbjct:   343 HRLIYDLLQDELKSGLHALSIVAKTPAEV 371

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IGI;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IGI;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:505006189 AT1G55805 "AT1G55805" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 62/85 (72%), Positives = 75/85 (88%)

Query:    80 RIRDKLEKELRPVVLEVEDISYQHAGHAGVRG-SDGETHFNVKIVSKEFEGKSLVKRHRL 138
             R+R+KL+KEL PV L +ED+SYQHAGHAG++G +D ETHFNVKIVSK FEG +LVKRHRL
Sbjct:    71 RMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEGMNLVKRHRL 130

Query:   139 IYDLLQEELQNGLHALSIVARTPSE 163
             +Y LL+EEL  GLHALSIV++TPSE
Sbjct:   131 VYHLLREELDTGLHALSIVSKTPSE 155

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

CGD|CAL0001596 orf19.5016 [Candida albicans (taxid:5476)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 41/87 (47%), Positives = 61/87 (70%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGET--HFNVKIVSKEFEGKSLVKRHRL 138
             I  K+  E +P+  ++++ S++HA HAG+RG+  +T  HF ++IVS  FEGKSL  RHRL
Sbjct:    30 IISKITNEFKPLYFKIDNDSHKHAHHAGIRGAKNKTESHFRLEIVSDVFEGKSLSARHRL 89

Query:   139 IYDLLQEELQN-GLHALSIVARTPSEV 164
             +Y LL  EL+N G+HAL +  +TP E+
Sbjct:    90 VYSLLANELKNDGVHALQMKTKTPEEI 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

UNIPROTKB|Q5AKW1 CaO19.12483 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 41/87 (47%), Positives = 61/87 (70%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGET--HFNVKIVSKEFEGKSLVKRHRL 138
             I  K+  E +P+  ++++ S++HA HAG+RG+  +T  HF ++IVS  FEGKSL  RHRL
Sbjct:    30 IISKITNEFKPLYFKIDNDSHKHAHHAGIRGAKNKTESHFRLEIVSDVFEGKSLSARHRL 89

Query:   139 IYDLLQEELQN-GLHALSIVARTPSEV 164
             +Y LL  EL+N G+HAL +  +TP E+
Sbjct:    90 VYSLLANELKNDGVHALQMKTKTPEEI 116

GO:0003674 "molecular_function" evidence=ND

SGD|S000007586 YAL044W-A "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 35/67 (52%), Positives = 51/67 (76%)

Query:   100 SYQHAGHAGVRGS-DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ--NGLHALSI 156
             S++H GHAGV+G+   ETHF +++VSK+FEG  L +RHR++Y LLQ+E+   NG+HAL +
Sbjct:    38 SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQL 97

Query:   157 VARTPSE 163
               +TP E
Sbjct:    98 SLKTPQE 104

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1916418 Bola1 "bolA-like 1 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 42/83 (50%), Positives = 56/83 (67%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
             IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL++
Sbjct:    36 IRAKLEQALSPEVLELRNES---GGHAVPAGS--ETHFRVAVVSSRFEGMSPLQRHRLVH 90

Query:   141 DLLQEELQNGLHALSIVARTPSE 163
             + L EEL   +HAL+I A+TP++
Sbjct:    91 EALSEELAGPVHALAIQAKTPAQ 113

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

RGD|1310586 Bola1 "bolA homolog 1 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 42/83 (50%), Positives = 56/83 (67%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
             IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL++
Sbjct:    36 IRAKLEQALSPEVLELRNES---GGHAVPAGS--ETHFRVAVVSSRFEGMSPLQRHRLVH 90

Query:   141 DLLQEELQNGLHALSIVARTPSE 163
             + L EEL   +HAL+I A+TP++
Sbjct:    91 EALSEELAGPVHALAIQAKTPAQ 113

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|Q3T138 BOLA1 "BolA-like protein 1" [Bos taurus (taxid:9913)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/83 (51%), Positives = 55/83 (66%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
             IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL++
Sbjct:    36 IRTKLEQALNPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRFEGLSPLQRHRLVH 90

Query:   141 DLLQEELQNGLHALSIVARTPSE 163
               L EEL   +HAL+I ARTP++
Sbjct:    91 AALSEELAGPVHALAIQARTPAQ 113

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SDF8 BOLA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 43/83 (51%), Positives = 55/83 (66%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
             IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL++
Sbjct:    36 IRMKLEQALNPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRFEGLSPLQRHRLVH 90

Query:   141 DLLQEELQNGLHALSIVARTPSE 163
               L EEL   +HAL+I ARTP++
Sbjct:    91 TALSEELAGPVHALAIQARTPAQ 113

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9Y3E2 BOLA1 "BolA-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 43/83 (51%), Positives = 55/83 (66%)

Query:    81 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
             IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL++
Sbjct:    36 IRTKLEEALSPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRFEGLSPLQRHRLVH 90

Query:   141 DLLQEELQNGLHALSIVARTPSE 163
               L EEL   +HAL+I ARTP++
Sbjct:    91 AALAEELGGPVHALAIQARTPAQ 113

GO:0005739 "mitochondrion" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84W65	SUFE_ARATH	No assigned EC number	0.7669	0.6097	0.2695	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01400046	hypothetical protein (371 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.3183.1	selenocysteine lyase/cysteine desulfurase (EC-2.8.1.7) (468 aa)	•						•		0.519

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	7e-31
pfam01722	72	pfam01722, BolA, BolA-like protein	8e-30
PRK11628	105	PRK11628, PRK11628, transcriptional regulator BolA	4e-18
COG5007	80	COG5007, COG5007, Predicted transcriptional regula	8e-13

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score =  106 bits (267), Expect = 7e-31
 Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 4/84 (4%)

Query: 80  RIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLI 139
           RI  KL     P  LE+ D S++H GHAG     G +HF V IVS+ F+GKSLV RHRL+
Sbjct: 7   RIEKKLRAAFPPSFLEIIDESHRHHGHAG----GGGSHFKVVIVSEAFQGKSLVARHRLV 62

Query: 140 YDLLQEELQNGLHALSIVARTPSE 163
           Y  L++EL  G+HAL++   TP E
Sbjct: 63  YSALKDELSGGIHALALHTYTPEE 86

Length = 90

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score =  103 bits (259), Expect = 8e-30
 Identities = 41/81 (50%), Positives = 49/81 (60%), Gaps = 10/81 (12%)

Query: 83  DKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDL 142
             LE  L P  LEVED S++             +HF V +VS  FEGKSLVKRHRL+Y  
Sbjct: 1   KLLEAALPPAHLEVEDESHKG----------DGSHFKVVVVSDAFEGKSLVKRHRLVYAA 50

Query: 143 LQEELQNGLHALSIVARTPSE 163
           L+EEL +G+HALSI   TP E
Sbjct: 51  LKEELASGIHALSIKTYTPEE 71

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional

 Score = 74.4 bits (183), Expect = 4e-18
 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 9/89 (10%)

Query: 79  MRIRDKLEKELR----PVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVK 134
           M IR+++E++LR    PV LEV D SY+H   AG      E+HF V +VS  F G+  + 
Sbjct: 1   MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLN 55

Query: 135 RHRLIYDLLQEELQNGLHALSIVARTPSE 163
           RHR+IY  L EEL   +HAL++   T  E
Sbjct: 56  RHRMIYSTLAEELSTTVHALALHTYTIKE 84

Length = 105

>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]

 Score = 60.1 bits (146), Expect = 8e-13
 Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 106 HAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ-NGLHALSIVARTPSE 163
              V G DG +HF V  VS+EF GKS VKR +L+Y  L   +  N +HALSI   TP+E
Sbjct: 18  EVEVEG-DG-SHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSIKTYTPAE 74

Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
PRK11628	105	transcriptional regulator BolA; Provisional	99.97
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.97
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.97
KOG2313	100	consensus Stress-induced protein UVI31+ [Signal tr	99.96
KOG3348	85	consensus BolA (bacterial stress-induced morphogen	99.92
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.9

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.97  E-value=7.6e-32  Score=203.55  Aligned_cols=85  Identities=42%  Similarity=0.636  Sum_probs=80.3

Q ss_pred             CcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceE
Q 043786           75 GSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHAL  154 (164)
Q Consensus        75 ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHAL  154 (164)
                      |...++|+++|+.+|+|.+|+|+|+|++|+||.|    + ++||+|+|||+.|+||++|+||||||++|+++|..+||||
T Consensus         1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g----~-~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHAL   75 (105)
T PRK11628          1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAG----S-ESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHAL   75 (105)
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCC----C-CceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCccce
Confidence            5678999999999999999999999999999874    3 4899999999999999999999999999999999779999


Q ss_pred             EeeeeCCCCC
Q 043786          155 SIVARTPSEV  164 (164)
Q Consensus       155 SIkT~TP~E~  164 (164)
                      +|+||||+||
T Consensus        76 si~t~tp~Ew   85 (105)
T PRK11628         76 ALHTYTIKEW   85 (105)
T ss_pred             eeecCCHHHH
Confidence            9999999998

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.97  E-value=1e-31  Score=192.01  Aligned_cols=76  Identities=59%  Similarity=0.927  Sum_probs=68.6

Q ss_pred             HHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEeeeeCCCC
Q 043786           84 KLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE  163 (164)
Q Consensus        84 kL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSIkT~TP~E  163 (164)
                      ||+++|+|+.|+|+|+|++|+||++     |++||+|+|||+.|+|||+|+||||||++|+++|+++||||+|+|+||+|
T Consensus         1 Kl~~~l~~~~l~V~d~S~~H~~h~~-----g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAlsi~t~tp~E   75 (76)
T PF01722_consen    1 KLKAALPPTHLEVEDESHKHAGHAG-----GGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALSIKTYTPEE   75 (76)
T ss_dssp             HHHHHHTTSEEEEEE-SSSSSS-CC-----SSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEEEEEE-HHH
T ss_pred             ChhHhCCCcEEEEEECcccccCCCC-----CCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEEEEcCCccc
Confidence            6889999999999999999999993     25999999999999999999999999999999999889999999999999


Q ss_pred             C
Q 043786          164 V  164 (164)
Q Consensus       164 ~  164 (164)
                      |
T Consensus        76 w   76 (76)
T PF01722_consen   76 W   76 (76)
T ss_dssp             H
T ss_pred             C
Confidence            8

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.97  E-value=6.1e-31  Score=194.51  Aligned_cols=82  Identities=50%  Similarity=0.796  Sum_probs=78.1

Q ss_pred             HHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEeee
Q 043786           79 MRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVA  158 (164)
Q Consensus        79 ~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSIkT  158 (164)
                      .+|+++|+++|+|.+++|+|+|+.|++|++   || ++||+|+|||+.|+|||+|+|||+||++|+|+|..+||||+|+|
T Consensus         6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~---g~-~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALal~t   81 (90)
T COG0271           6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAG---GG-GSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALALHT   81 (90)
T ss_pred             HHHHHHHHhcCCCceEEEEecccccccCCC---CC-CCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeEeEe
Confidence            599999999999999999999999999997   34 49999999999999999999999999999999997899999999


Q ss_pred             eCCCCC
Q 043786          159 RTPSEV  164 (164)
Q Consensus       159 ~TP~E~  164 (164)
                      +||.||
T Consensus        82 ~t~~e~   87 (90)
T COG0271          82 YTPEEW   87 (90)
T ss_pred             eccchh
Confidence            999987

>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]

Probab=99.96  E-value=7.5e-30  Score=191.58  Aligned_cols=95  Identities=59%  Similarity=0.853  Sum_probs=89.0

Q ss_pred             CCCCCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCC-CCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHc
Q 043786           70 NSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS-DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ  148 (164)
Q Consensus        70 ~~~~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g-~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~  148 (164)
                      +....++++.+|+++|..+|.|..++++|+|+.|+||+..+|. ++|+||+|.|||++|+|||+|+||||||++|++|+.
T Consensus         4 ~~~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~   83 (100)
T KOG2313|consen    4 PSGIYGPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELA   83 (100)
T ss_pred             cccccCcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhh
Confidence            4456789999999999999999999999999999999988753 458999999999999999999999999999999999


Q ss_pred             C-CcceEEeeeeCCCCC
Q 043786          149 N-GLHALSIVARTPSEV  164 (164)
Q Consensus       149 ~-~IHALSIkT~TP~E~  164 (164)
                      . ++|||+|.++||.||
T Consensus        84 ~~gvHAL~i~aKTP~e~  100 (100)
T KOG2313|consen   84 GTGVHALSIMAKTPSEV  100 (100)
T ss_pred             ccceeEEEeeccCCCCC
Confidence            8 799999999999998

>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.8e-25  Score=163.86  Aligned_cols=78  Identities=44%  Similarity=0.655  Sum_probs=74.1

Q ss_pred             CcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceE
Q 043786           75 GSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHAL  154 (164)
Q Consensus        75 ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHAL  154 (164)
                      ++.+++|+++|+++|.|..|+|+|+|+          ||| +.|+|.|||+.|+||++|+|||+||++|+++|+ .||||
T Consensus         2 ~~~e~~l~~~L~~~l~p~~v~V~D~Sg----------GCG-~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik-~iHal   69 (85)
T KOG3348|consen    2 TVTEERLEELLTEALEPEHVEVQDVSG----------GCG-SMFDVVIVSAAFEGKSLLARHRLVNSILAEEIK-EIHAL   69 (85)
T ss_pred             cchHHHHHHHHHhhcCceEEEEEEcCC----------Ccc-ceEEEEEEccccCChHHHHHHHHHHHHHHHHHH-HHhhh
Confidence            456899999999999999999999995          687 999999999999999999999999999999999 59999


Q ss_pred             EeeeeCCCCC
Q 043786          155 SIVARTPSEV  164 (164)
Q Consensus       155 SIkT~TP~E~  164 (164)
                      +++||||++|
T Consensus        70 t~kt~t~~~w   79 (85)
T KOG3348|consen   70 TIKTYTPEEW   79 (85)
T ss_pred             eeeecChhhh
Confidence            9999999998

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.90  E-value=5.9e-24  Score=154.37  Aligned_cols=72  Identities=46%  Similarity=0.636  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcC-CcceEEe
Q 043786           78 GMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQN-GLHALSI  156 (164)
Q Consensus        78 ~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~-~IHALSI  156 (164)
                      .++|++.|+++||.++++|+.              +| +||.+++||+.|+|||+|+|||+||+.|.++|.+ .||||||
T Consensus         3 ~e~Ik~ll~~~L~~e~v~V~G--------------dg-~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsi   67 (80)
T COG5007           3 NEEIKSLLENALPLEEVEVEG--------------DG-SHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSI   67 (80)
T ss_pred             HHHHHHHHHhcCCccEEEEec--------------CC-ceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEEe
Confidence            478999999999999999985              34 8999999999999999999999999999999994 8999999


Q ss_pred             eeeCCCCC
Q 043786          157 VARTPSEV  164 (164)
Q Consensus       157 kT~TP~E~  164 (164)
                      +||||+||
T Consensus        68 kt~Tp~eW   75 (80)
T COG5007          68 KTYTPAEW   75 (80)
T ss_pred             eecCHHHh
Confidence            99999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
1v60_A	123	Solution Structure Of Bola1 Protein From Mus Muscul		2e-15
2dhm_A	107	Solution Structure Of The Bola Protein From Escheri		2e-12
2kdn_A	108	Solution Structure Of Pfe0790c, A Putative Bola-Lik		2e-09
1v9j_A	113	Solution Structure Of A Bola-Like Protein From Mus		9e-07
1xs3_A	80	Solution Structure Analysis Of The Xc975 Protein Le		2e-06
3tr3_A	82	Structure Of A Bola Protein Homologue From Coxiella		3e-06
3o2e_A	105	Crystal Structure Of A Bol-Like Protein From Babesi		1e-05
1ny8_A	97	Solution Structure Of Protein Yrba From Escherichia		6e-04

>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus Length = 123

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 5/83 (6%)
Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           IR KLE+ L P VLE+ + S  HA  AG      ETHF V +VS  FEG S ++RHRL++
Sbjct: 31  IRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRLVH 85
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
           + L EEL   +HAL+I A+TP++
Sbjct: 86  EALSEELAGPVHALAIQAKTPAQ 108

>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia Coli Length = 107

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 9/86 (10%)
Query: 79  MRIRDKLEKELR----PVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVK 134
           M IR+++E++LR    PV LEV D SY+H   AG      E+HF V +VS  F G+  + 
Sbjct: 8   MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRFTGERFLN 62
Query: 135 RHRLIYDLLQEELQNGLHALSIVART 160
           RHR+IY  L EEL   +HAL++   T
Sbjct: 63  RHRMIYSTLAEELSTTVHALALHTYT 88

>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like Protein From The Protozoan Parasite Plasmodium Falciparum Length = 108

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           I DKL   L+P  LE+ D           +     T F+  IVS  FE K L+ RHRL+ 
Sbjct: 29  IEDKLSSALKPTFLELVD-----------KSCGCGTSFDAVIVSNNFEDKKLLDRHRLVN 77
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
            +L+EELQN +HA S+   TP E
Sbjct: 78  TILKEELQN-IHAFSMKCHTPLE 99

>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus Musculus Length = 113

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           +R+KL ++L    +EVED +               T F V +VS +FEGK L++RHRL+ 
Sbjct: 35  LREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQRHRLVN 84
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
           + L EEL + +HA      TP +
Sbjct: 85  ECLAEELPH-IHAFEQKTLTPEQ 106

>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein Length = 80

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 109 VRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           V+G DG  HF   +VS  F GK+ + RHR++Y  L E +   +HAL +   TP E
Sbjct: 26  VQGEDG-VHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQLKTLTPDE 79

>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella Burnetii Length = 82

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 113 DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           DG  HF   ++   FEG++ + RHRL+Y+ L    Q+ +HALS+   TP E
Sbjct: 29  DGH-HFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHALSLKTYTPDE 78

>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           + ++L   L P  L+V D    ++G  G         FN  IVS++FEGK L+ R RL+ 
Sbjct: 28  VEERLRSMLSPQFLKVTD----NSGGCGA-------AFNAYIVSQQFEGKGLLDRQRLVN 76
Query: 141 DLLQEELQNGLHALSIVARTPSE 163
             +  E+   +HA ++   TP E
Sbjct: 77  SAIAAEMPQ-IHAFTMKCLTPGE 98

>pdb|1NY8|A Chain A, Solution Structure Of Protein Yrba From Escherichia Coli: Northeast Structural Genomics Consortium Target Er115 Length = 97

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 113 DGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEEL-QNGLHALSIVARTPSE 163
           DG +HF V  V + F+G S VK+ + +Y  L E +  N +HA+SI A TP+E
Sbjct: 29  DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAE 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	2e-40
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	2e-39
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	6e-30
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	5e-29
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	4e-28
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	5e-24
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	8e-24
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	2e-20
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	4e-16

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score =  130 bits (330), Expect = 2e-40
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 68  GSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEF 127
           GS+         RI +KL    +PV LEV D SY+H   AG      E+HF V +VS  F
Sbjct: 1   GSSGSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-----SESHFKVVLVSDRF 55

Query: 128 EGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
            G+  + RHR+IY  L EEL   +HAL++   T  E
Sbjct: 56  TGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKE 91

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score =  128 bits (324), Expect = 2e-39
 Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 5/95 (5%)

Query: 69  SNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFE 128
           + S   G     IR KLE+ L P VLE+ + S  HA  AG      ETHF V +VS  FE
Sbjct: 19  AGSAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFE 73

Query: 129 GKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           G S ++RHRL+++ L EEL   +HAL+I A+TP++
Sbjct: 74  GMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQ 108

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score =  104 bits (261), Expect = 6e-30
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 22/117 (18%)

Query: 58  MEGDSGAGDNGSNSGGLGSRGMR-----------IRDKLEKELRPVVLEVEDISYQHAGH 106
           M+G S    + S+   L  RG             +R+KL ++L    +EVED +      
Sbjct: 1   MKGSSHHHHHHSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCA- 59

Query: 107 AGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
                    T F V +VS +FEGK L++RHRL+ + L EEL   +HA      TP +
Sbjct: 60  ---------TSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ 106

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score =  102 bits (255), Expect = 5e-29
 Identities = 36/103 (34%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 61  DSGAGDNGSNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNV 120
              +G       G       I DKL   L+P  LE+ D S               T F+ 
Sbjct: 9   HHSSGRENLYFQGHMCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDA 57

Query: 121 KIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
            IVS  FE K L+ RHRL+  +L+EELQ  +HA S+   TP E
Sbjct: 58  VIVSNNFEDKKLLDRHRLVNTILKEELQ-NIHAFSMKCHTPLE 99

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 99.5 bits (248), Expect = 4e-28
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 69  SNSGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFE 128
           +   G       + ++L   L P  L+V D S                 FN  IVS++FE
Sbjct: 16  TQGPGSMVSKSIVEERLRSMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFE 64

Query: 129 GKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
           GK L+ R RL+   +  E+   +HA ++   TP E
Sbjct: 65  GKGLLDRQRLVNSAIAAEMP-QIHAFTMKCLTPGE 98

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 88.2 bits (219), Expect = 5e-24
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 14/83 (16%)

Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           IR  +E  L    ++V+               +   HF   +VS  F GK+ + RHR++Y
Sbjct: 11  IRKLIESGLPEARVDVQG--------------EDGVHFEATVVSPAFVGKAPLARHRMVY 56

Query: 141 DLLQEELQNGLHALSIVARTPSE 163
             L E +   +HAL +   TP E
Sbjct: 57  ATLGELMGGAIHALQLKTLTPDE 79

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 87.8 bits (218), Expect = 8e-24
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 14/83 (16%)

Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           I+  +E  L    +   +                  HF   ++   FEG++ + RHRL+Y
Sbjct: 10  IKQWIETGLSESRVISAE--------------GDGHHFEAVVLCPTFEGQTALTRHRLVY 55

Query: 141 DLLQEELQNGLHALSIVARTPSE 163
           + L   +Q+ +HALS+   TP E
Sbjct: 56  NALGSHMQSDIHALSLKTYTPDE 78

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 79.8 bits (197), Expect = 2e-20
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           I+  L   L    + V                   +HF V  V + F+G S VK+ + +Y
Sbjct: 11  IQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQTVY 55

Query: 141 DLLQEELQNG-LHALSIVARTPSE 163
             L E + +  +HA+SI A TP+E
Sbjct: 56  GPLMEYIADNRIHAVSIKAYTPAE 79

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 68.2 bits (167), Expect = 4e-16
 Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 15/80 (18%)

Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           +   +        + V  +                 H+++K++S +F+GKS +++HR+IY
Sbjct: 11  LELLIRNAFPEAEITVTSLV------------GDNNHYSIKVISSQFQGKSKLEQHRMIY 58

Query: 141 DLLQEELQNGLHALSIVART 160
            +L       +HA+ I    
Sbjct: 59  KVLDGL---NIHAIQIQTGC 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	100.0
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.98
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.96
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.96
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.95
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.95
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.95
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.93
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.93

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=100.00  E-value=1.2e-33  Score=212.84  Aligned_cols=87  Identities=43%  Similarity=0.619  Sum_probs=82.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786           73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH  152 (164)
Q Consensus        73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH  152 (164)
                      ..|+++++|+++|+++|+|..|+|+|+|++|+||.|    | ++||+|+|||+.|+||++|+||||||++|+++|+.+||
T Consensus         6 ~~m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G----~-gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IH   80 (107)
T 2dhm_A            6 SGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG----S-ESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVH   80 (107)
T ss_dssp             CCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC----S-CCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCC
T ss_pred             CCCCHHHHHHHHHHhcCCCcEEEEEECcccccCCCC----C-CceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence            447899999999999999999999999999999974    4 49999999999999999999999999999999997899


Q ss_pred             eEEeeeeCCCCC
Q 043786          153 ALSIVARTPSEV  164 (164)
Q Consensus       153 ALSIkT~TP~E~  164 (164)
                      ||+|+||||+||
T Consensus        81 ALsi~t~TP~Ew   92 (107)
T 2dhm_A           81 ALALHTYTIKEW   92 (107)
T ss_dssp             CCEEEEECHHHH
T ss_pred             eEEEEecCHHHH
Confidence            999999999998

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.98  E-value=3.9e-32  Score=209.26  Aligned_cols=89  Identities=48%  Similarity=0.667  Sum_probs=83.3

Q ss_pred             CCCCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCC
Q 043786           71 SGGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNG  150 (164)
Q Consensus        71 ~~~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~  150 (164)
                      ....++++++|+++|+++|+|.+|+|+|+|++|+||.|    | ++||+|+|||+.|+||++|+||||||++|+++|+.+
T Consensus        21 ~~~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G----~-gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~   95 (123)
T 1v60_A           21 SAAAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG----S-ETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGP   95 (123)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT----C-CSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTT
T ss_pred             CCCCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCCC----C-CCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCC
Confidence            34457899999999999999999999999999999974    4 499999999999999999999999999999999977


Q ss_pred             cceEEeeeeCCCCC
Q 043786          151 LHALSIVARTPSEV  164 (164)
Q Consensus       151 IHALSIkT~TP~E~  164 (164)
                      ||||+|+||||+||
T Consensus        96 IHALsi~t~TP~Ew  109 (123)
T 1v60_A           96 VHALAIQAKTPAQW  109 (123)
T ss_dssp             CSEEEEEEECTTTT
T ss_pred             cceeEeEecCHHHH
Confidence            99999999999999

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.96  E-value=3.3e-29  Score=189.48  Aligned_cols=81  Identities=46%  Similarity=0.644  Sum_probs=75.0

Q ss_pred             CCCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCc
Q 043786           72 GGLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGL  151 (164)
Q Consensus        72 ~~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~I  151 (164)
                      ...|.++++|+++|+++|+|+.|+|+|+|+          ||+ +||+|+|||+.|+||++|+||||||++|+++|+. |
T Consensus        20 ~~~Mm~~~~I~~~L~~~l~p~~l~V~DeS~----------G~g-sHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~-I   87 (108)
T 2kdn_A           20 QGHMCIQKVIEDKLSSALKPTFLELVDKSC----------GCG-TSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQN-I   87 (108)
T ss_dssp             TTSCSHHHHHHHHHHHHHCCSEEEEEECCC----------SSS-CCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGG-C
T ss_pred             cCCCCcHHHHHHHHHhhCCCcEEEEEeCCC----------CCC-ceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhc-C
Confidence            334678999999999999999999999994          354 9999999999999999999999999999999995 9


Q ss_pred             ceEEeeeeCCCCC
Q 043786          152 HALSIVARTPSEV  164 (164)
Q Consensus       152 HALSIkT~TP~E~  164 (164)
                      |||+|+||||+||
T Consensus        88 HALsi~t~TP~Ew  100 (108)
T 2kdn_A           88 HAFSMKCHTPLEY  100 (108)
T ss_dssp             SCEEEEEECHHHH
T ss_pred             ceEEEEecChHHH
Confidence            9999999999998

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.96  E-value=9.9e-30  Score=191.46  Aligned_cols=80  Identities=35%  Similarity=0.525  Sum_probs=75.3

Q ss_pred             CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786           73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH  152 (164)
Q Consensus        73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH  152 (164)
                      ..|+++++|+++|+++|+|..|+|+|+|+          ||| +||+|+|||+.|+||++|+|||+||++|+++|+ .||
T Consensus        20 ~~M~~~~~I~~kL~~~l~p~~l~V~D~S~----------g~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~-~IH   87 (105)
T 3o2e_A           20 GSMVSKSIVEERLRSMLSPQFLKVTDNSG----------GCG-AAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMP-QIH   87 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHCCSEEEEEECCB----------TTB-EEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGG-GEE
T ss_pred             CcCcHHHHHHHHHHhhCCCCEEEEEECCC----------CCC-cEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHh-cCc
Confidence            34889999999999999999999999994          354 999999999999999999999999999999999 799


Q ss_pred             eEEeeeeCCCCC
Q 043786          153 ALSIVARTPSEV  164 (164)
Q Consensus       153 ALSIkT~TP~E~  164 (164)
                      ||+|+||||+||
T Consensus        88 ALsi~t~TP~Ew   99 (105)
T 3o2e_A           88 AFTMKCLTPGEW   99 (105)
T ss_dssp             EEEEEEECHHHH
T ss_pred             eeEEEeCCHHHH
Confidence            999999999998

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.95  E-value=8e-29  Score=178.84  Aligned_cols=78  Identities=31%  Similarity=0.528  Sum_probs=71.4

Q ss_pred             CCCcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcc
Q 043786           73 GLGSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLH  152 (164)
Q Consensus        73 ~~ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IH  152 (164)
                      +.|...++|+++|+++|+|++|+|++             ||| +||+|+|||+.|+||++|+|||+||++|+++|...||
T Consensus         2 ~~Mm~~~~I~~~L~~~l~~~~l~V~~-------------g~g-shf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iH   67 (82)
T 3tr3_A            2 NAMVTTHDIKQWIETGLSESRVISAE-------------GDG-HHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIH   67 (82)
T ss_dssp             --CCCHHHHHHHHHHHSTTCEEEEEE-------------ECS-SEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCS
T ss_pred             CccchHHHHHHHHHhhCCCcEEEEEc-------------CCC-CeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence            45678899999999999999999994             254 9999999999999999999999999999999977899


Q ss_pred             eEEeeeeCCCCC
Q 043786          153 ALSIVARTPSEV  164 (164)
Q Consensus       153 ALSIkT~TP~E~  164 (164)
                      ||+|+|+||+||
T Consensus        68 AL~i~t~Tp~Ew   79 (82)
T 3tr3_A           68 ALSLKTYTPDEY   79 (82)
T ss_dssp             EEEEEEECHHHH
T ss_pred             eEEEEeCCHHHH
Confidence            999999999998

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.95  E-value=2.3e-28  Score=175.44  Aligned_cols=76  Identities=34%  Similarity=0.569  Sum_probs=70.6

Q ss_pred             CcHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceE
Q 043786           75 GSRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHAL  154 (164)
Q Consensus        75 ms~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHAL  154 (164)
                      |-.+++|+++|+++|+|++|+|++             +|| +||+|+|||+.|+||++|+|||+||++|+++|+++||||
T Consensus         5 mm~~~~I~~~L~~~l~~~~l~V~G-------------~~g-sHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHAL   70 (80)
T 1xs3_A            5 PLDAETIRKLIESGLPEARVDVQG-------------EDG-VHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHAL   70 (80)
T ss_dssp             CCHHHHHHHHHHHHSSSCEEEEES-------------CTT-SCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCC
T ss_pred             cCCHHHHHHHHHhhCCCcEEEEEc-------------CCC-CEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceE
Confidence            457899999999999999999982             244 899999999999999999999999999999999779999


Q ss_pred             EeeeeCCCCC
Q 043786          155 SIVARTPSEV  164 (164)
Q Consensus       155 SIkT~TP~E~  164 (164)
                      +|+|+||+||
T Consensus        71 si~t~Tp~E~   80 (80)
T 1xs3_A           71 QLKTLTPDEA   80 (80)
T ss_dssp             EEEEECGGGC
T ss_pred             EEEecCCCCC
Confidence            9999999998

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.95  E-value=1.6e-28  Score=186.94  Aligned_cols=78  Identities=38%  Similarity=0.582  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEE
Q 043786           76 SRGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALS  155 (164)
Q Consensus        76 s~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALS  155 (164)
                      ..+++|+++|+++|+|+.|+|+|+|+         +||+ +||+|+|||+.|+||++|+|||+||++|+++|+. ||||+
T Consensus        30 m~~~~I~~~L~~~l~p~~l~V~DeS~---------~G~g-sHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~-IHALs   98 (113)
T 1v9j_A           30 LSADYLREKLRQDLEAEHVEVEDTTL---------NRCA-TSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPH-IHAFE   98 (113)
T ss_dssp             SCHHHHHHHHHHHHTCSEEEEEECCS---------SSSC-CCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGG-CSSEE
T ss_pred             CcHHHHHHHHHhhCCCcEEEEEeccC---------CCCC-ceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhc-CceEE
Confidence            36899999999999999999999994         1354 9999999999999999999999999999999995 99999


Q ss_pred             eeeeCCCCC
Q 043786          156 IVARTPSEV  164 (164)
Q Consensus       156 IkT~TP~E~  164 (164)
                      |+||||+||
T Consensus        99 i~t~TP~Ew  107 (113)
T 1v9j_A           99 QKTLTPEQW  107 (113)
T ss_dssp             EEEECHHHH
T ss_pred             EEecChHHH
Confidence            999999998

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.93  E-value=4.4e-27  Score=167.61  Aligned_cols=70  Identities=24%  Similarity=0.521  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEe
Q 043786           77 RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSI  156 (164)
Q Consensus        77 ~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSI  156 (164)
                      .+++|+++|+++|+|++|+|+|+|           ||| +||+|+|||+.|+||++|+|||+||++|+++   +||||+|
T Consensus         7 ~~~~I~~~L~~~l~~~~l~V~d~S-----------G~g-~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e---~iHALsi   71 (76)
T 2kz0_A            7 TQSQLELLIRNAFPEAEITVTSLV-----------GDN-NHYSIKVISSQFQGKSKLEQHRMIYKVLDGL---NIHAIQI   71 (76)
T ss_dssp             TTHHHHHHHHHHCTTEEEEEECCS-----------STT-SCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS---CCCSSSE
T ss_pred             cHHHHHHHHHhhCCCcEEEEEECC-----------CCc-cEEEEEEEchHhCCCCHHHHHHHHHHHhccC---CceEEEE
Confidence            568999999999999999999999           244 8999999999999999999999999999998   6999999


Q ss_pred             eeeCC
Q 043786          157 VARTP  161 (164)
Q Consensus       157 kT~TP  161 (164)
                      +|+||
T Consensus        72 ~t~tp   76 (76)
T 2kz0_A           72 QTGCK   76 (76)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            99998

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.93  E-value=9e-27  Score=172.96  Aligned_cols=73  Identities=37%  Similarity=0.518  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHc-CCcceEE
Q 043786           77 RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQ-NGLHALS  155 (164)
Q Consensus        77 ~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~-~~IHALS  155 (164)
                      .+++|+++|+++|+|+.|+|+.              || +||+|+|||+.|+||++|+|||+||++|+++|+ .+||||+
T Consensus         7 ~~~~I~~~L~~~l~p~~l~V~G--------------~g-sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALs   71 (97)
T 1ny8_A            7 ENNEIQSVLMNALSLQEVHVSG--------------DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS   71 (97)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEEE--------------SS-SEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE
T ss_pred             CHHHHHHHHHhhCCCcEEEEEc--------------CC-ceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEE
Confidence            3489999999999999999982              44 899999999999999999999999999999998 4799999


Q ss_pred             eeeeCCCCC
Q 043786          156 IVARTPSEV  164 (164)
Q Consensus       156 IkT~TP~E~  164 (164)
                      |+|+||+||
T Consensus        72 i~t~TP~Ew   80 (97)
T 1ny8_A           72 IKAYTPAEW   80 (97)
T ss_dssp             EEECCHHHH
T ss_pred             eEecChHHH
Confidence            999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	164
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	6e-25
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	4e-22

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.7 bits (225), Expect = 6e-25
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 65  GDNGSNSGGLGSRG---M-----RIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGET 116
             +G++    GS G   M      +R+KL ++L    +EVED +               T
Sbjct: 11  HSSGASLVPRGSEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRCA----------T 60

Query: 117 HFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVARTPSE 163
            F V +VS +FEGK L++RHRL+ + L EEL   +HA      TP +
Sbjct: 61  SFRVLVVSAKFEGKPLLQRHRLVNECLAEELP-HIHAFEQKTLTPEQ 106

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 82.9 bits (205), Expect = 4e-22
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 16/84 (19%)

Query: 81  IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIY 140
           I+  L   L    + V                   +HF V  V + F+G S VK+ + +Y
Sbjct: 11  IQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQTVY 55

Query: 141 DLLQEELQNG-LHALSIVARTPSE 163
             L E + +  +HA+SI A TP+E
Sbjct: 56  GPLMEYIADNRIHAVSIKAYTPAE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.94
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.91
d1ylqa1	90	Putative nucleotidyltransferase AF0614 {Archaeon A	95.42

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.7e-28  Score=183.00  Aligned_cols=85  Identities=36%  Similarity=0.551  Sum_probs=76.6

Q ss_pred             CCCCCCCc-HHHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHH
Q 043786           69 SNSGGLGS-RGMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEEL  147 (164)
Q Consensus        69 ~~~~~~ms-~~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei  147 (164)
                      ......|+ .+++|+++|+++|+|.+|+|+|+|+.|+         | +||+|+|||+.|.||++|+|||+||++|+++|
T Consensus        22 ~~~~~~m~~~~e~I~~kL~~~~~~~~leV~D~S~~h~---------G-~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei   91 (113)
T d1v9ja_          22 SEGAATMELSADYLREKLRQDLEAEHVEVEDTTLNRC---------A-TSFRVLVVSAKFEGKPLLQRHRLVNECLAEEL   91 (113)
T ss_dssp             CCCSSSSSSCHHHHHHHHHHHHTCSEEEEEECCSSSS---------C-CCEEEEEECSHHHHSCHHHHHHHHHHHTTTTG
T ss_pred             CCCCCCCcccHHHHHHHHHhhCCCcEEEEEecCCCCC---------C-ceEEEEEEeccccCCchhHHHHhHHHHHHHHH
Confidence            34445555 4889999999999999999999998653         3 89999999999999999999999999999999


Q ss_pred             cCCcceEEeeeeCCCCC
Q 043786          148 QNGLHALSIVARTPSEV  164 (164)
Q Consensus       148 ~~~IHALSIkT~TP~E~  164 (164)
                      + .||||+|+|+||+||
T Consensus        92 ~-~iHAlsi~t~Tp~Ew  107 (113)
T d1v9ja_          92 P-HIHAFEQKTLTPEQW  107 (113)
T ss_dssp             G-GCSSEEEEEECHHHH
T ss_pred             h-cceeeEEEeCCHHHH
Confidence            8 699999999999998

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.8e-25  Score=164.16  Aligned_cols=72  Identities=36%  Similarity=0.516  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcC-CcceEEe
Q 043786           78 GMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQN-GLHALSI  156 (164)
Q Consensus        78 ~~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~-~IHALSI  156 (164)
                      .++|+++|.++||++.|+|.+              +| +||+|+|||+.|+|||+|+|||+||++|+++|++ .||||+|
T Consensus         8 ~~eI~~~L~~~l~~~~v~V~g--------------~g-~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAlsi   72 (97)
T d1ny8a_           8 NNEIQSVLMNALSLQEVHVSG--------------DG-SHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVSI   72 (97)
T ss_dssp             CHHHHHHHHHHHCCSEEEEEE--------------SS-SEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhhCCCcEEEEeC--------------CC-cEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceeeEe
Confidence            478999999999999999975              33 8999999999999999999999999999999985 6999999


Q ss_pred             eeeCCCCC
Q 043786          157 VARTPSEV  164 (164)
Q Consensus       157 kT~TP~E~  164 (164)
                      +|+||+||
T Consensus        73 kt~Tp~Ew   80 (97)
T d1ny8a_          73 KAYTPAEW   80 (97)
T ss_dssp             EECCHHHH
T ss_pred             EeCCHHHH
Confidence            99999998

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Putative nucleotidyltransferase AF0614
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.42  E-value=0.014  Score=40.02  Aligned_cols=75  Identities=17%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             HHHHHHHHhcCCCceEEEEecCCcccCCCCCcCCCCcceEEEEEeccccCCCCHHHHHHHHHHHHHHHHcCCcceEEeee
Q 043786           79 MRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLIYDLLQEELQNGLHALSIVA  158 (164)
Q Consensus        79 ~~IkekL~~af~p~~leV~D~S~~HagH~g~~~g~gesHF~I~IVS~~F~GkS~VkRHRlVy~~Lkdei~~~IHALSIkT  158 (164)
                      ++|++.+++.++++.|.+.. |+  |-  |... ...|-+.|.||++.|.  +..+|.+.+..++...+.   |-+.+.+
T Consensus         2 ~~i~e~ik~~~~~~kViLFG-S~--Ar--G~~~-~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~---~pvd~~v   70 (90)
T d1ylqa1           2 KEIKEITKKDVQDAEIYLYG-SV--VE--GDYS-IGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD---SPFEFHI   70 (90)
T ss_dssp             HHHHHHHHHHCTTCEEEEES-HH--HH--CCSS-SCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT---CSEEEEE
T ss_pred             HHHHHHHHHHCCCcEEEEEC-cc--cc--CCCC-CCCCccEEEEEeCCCC--CHHHHHHHHHHHHhhccC---CCeEEEE
Confidence            67999999999999998885 21  11  1110 1237899999999996  468899998888875432   4689999


Q ss_pred             eCCCCC
Q 043786          159 RTPSEV  164 (164)
Q Consensus       159 ~TP~E~  164 (164)
                      +||+||
T Consensus        71 ~tpeef   76 (90)
T d1ylqa1          71 LTKKEW   76 (90)
T ss_dssp             ECHHHH
T ss_pred             cCHHHH
Confidence            999875