Citrus Sinensis ID: 043882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450------
Protein Sequence
MVAPEPETLSQGEVESALRADQHQKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIRKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcccccccccccccccccccccHcccccEEEEcHHHHHHHHcccccccccccHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHccccccccccccccccccccccccccccccHccHHHHHHHccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mvapepetlsqgeVESALRADQHQKTLTLLGRQSSIYSLTLDEFQHTLCesgknfgsmnmDEFLTSIWNAEEnqainsstqdsninANNVINnamsnnhtvqhlpvnettaattahgsivkqpslsrqasltlpaplcrkTVEEVWSEIhrgkqgghqqnssnnnnnvrnpeaasrqptfgemtLEDFLIKAGvvreqnttpvaqpppqqqfgiyqtnnnpvmspnfgtgHVLGLTgvsngasnngsvpvpapayqqmppargvvgsdqssaymgptnekgsggysatqqppqpppsppplavcyggrvgtgggyasggqpvaamspvsseavgtdqqvdgsashqfgmdhmggirkkriidgpVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL
Flexible Loop (DISEMBL)
mvapepetlsqgevesalradQHQKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGSivkqpslsrqaslTLPAPLCRKTVEEVWSEIHRgkqgghqqnssnnnnnvrNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAAMSPVSSEAVGTDQQVDGSASHQfgmdhmggirkkriidgpvekvverrqrrmiknresaarsrarkqAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYfeelkmkpytkaqkakeklRIMRRNLSCPL
Low Complexity Region (SEG)
MVAPEPETLSQGEVESALRADQHQKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDsninannvinnamsnnHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQnssnnnnnVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAqpppqqqFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATqqppqpppspppLAVCYggrvgtgggyasggQPVAAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIRKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL
Disordered region (IsUnstruct)
**************************LTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNA******************************************************************LCRKTVEEVW*************************************TLEDFLIKAGVV******************IY***********FGTGHVLGLT******************************************************************VCYGGRVGT*************************************************************************************************************************************************
Disordered Region (DISOPRED)
***********************************IYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQA*****************************************************************TVEEVW******************************************LIKAGVV********************************************************************************************************************************************************************************************************ELEA*LNQLKE**AH***************************************RN*****
Disordered Region (DISEMBL)
***************SALRADQHQKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSE***************NNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNE******************PPPLAVCYGGRVGTGGGYASGGQPVAA*****************SASHQFGMDHMGGIRKKRIIDGPVEKVVERRQRRMIK*************AYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL
Disordered Region (DISPRO)
*******************************RQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSS****************************************************TLPAPLCRKTVEEVWSEIHRGK************************PTFGEMTLEDFLIKAGVVREQNTTPV********FGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSA******EKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAA******************************************K**************SAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKP***********RI*RRN*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAPEPETLSQGEVESALRADQHQKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIRKKRIIDGPVEKVVERRQRRMIKNRESAARSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	456	2.2.26 [Sep-21-2011]
Q9SJN0	442	Protein ABSCISIC ACID-INS	yes	no	0.885	0.914	0.463	9e-87
Q9M7Q5	392	ABSCISIC ACID-INSENSITIVE	no	no	0.758	0.882	0.342	5e-45
Q9M7Q4	416	ABSCISIC ACID-INSENSITIVE	no	no	0.791	0.867	0.362	6e-42
Q8RYD6	331	ABSCISIC ACID-INSENSITIVE	no	no	0.278	0.383	0.428	4e-24
Q9LES3	297	ABSCISIC ACID-INSENSITIVE	no	no	0.265	0.407	0.404	5e-24
Q9M7Q2	431	ABSCISIC ACID-INSENSITIVE	no	no	0.311	0.329	0.423	1e-23
Q9M7Q3	454	ABSCISIC ACID-INSENSITIVE	no	no	0.344	0.345	0.419	2e-23
Q6ZDF3	318	bZIP transcription factor	no	no	0.221	0.317	0.519	2e-17
Q9C5Q2	262	ABSCISIC ACID-INSENSITIVE	no	no	0.274	0.477	0.328	1e-14
Q9FMM7	370	ABSCISIC ACID-INSENSITIVE	no	no	0.236	0.291	0.343	1e-11

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score =  321 bits (822), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 229/494 (46%), Positives = 277/494 (56%), Gaps = 90/494 (18%)

Query: 1   MVAPEPETLSQGEVESALRADQHQKT-------LTLLGRQSSIYSLTLDEFQHTLCESGK 53
           MV  E +  S+ EVES++   +H           T LGRQSSIYSLTLDEFQH LCE+GK
Sbjct: 1   MVTRETKLTSEREVESSMAQARHNGGGGGENHPFTSLGRQSSIYSLTLDEFQHALCENGK 60

Query: 54  NFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAAT 113
           NFGSMNMDEFL SIWNAEEN         +  + +   N+   NN+            + 
Sbjct: 61  NFGSMNMDEFLVSIWNAEENNNNQQQAAAAAGSHSVPANHNGFNNNNNNGGEGGVGVFSG 120

Query: 114 TAHGS--------IVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNN- 164
            + G+        I  + SL RQ SLTLPAPLCRKTV+EVWSEIHRG   G+  +S+   
Sbjct: 121 GSRGNEDANNKRGIANESSLPRQGSLTLPAPLCRKTVDEVWSEIHRGGGSGNGGDSNGRS 180

Query: 165 -----NNNVRNP-EAASRQPTFGEMTLEDFLIKAGVVREQN---------------TTPV 203
                 NN +N  E A+RQPTFGEMTLEDFL+KAGVVRE                 ++ +
Sbjct: 181 SSSNGQNNAQNGGETAARQPTFGEMTLEDFLVKAGVVREHPTNPKPNPNPNQNQNPSSVI 240

Query: 204 AQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARG 263
                QQ +G++Q   +P        G  +G+   S  A   G        YQQ PP + 
Sbjct: 241 PAAAQQQLYGVFQGTGDPSF-----PGQAMGVGDPSGYAKRTG-----GGGYQQAPPVQA 290

Query: 264 VVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVA 323
                                                  VCYGG VG G G    G  V 
Sbjct: 291 --------------------------------------GVCYGGGVGFGAGGQQMGM-VG 311

Query: 324 AMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIR-KKRIIDGPVEKVVERRQRRMIKNRES 382
            +SPVSS+ +G  Q VD +   Q+G+D MGG+R +KR++DGPVEKVVERRQRRMIKNRES
Sbjct: 312 PLSPVSSDGLGHGQ-VD-NIGGQYGVD-MGGLRGRKRVVDGPVEKVVERRQRRMIKNRES 368

Query: 383 AARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAK 442
           AARSRARKQAYTVELEAELNQLKEENA LK ALAE+ERK+KQQYFE LK +   K  K+ 
Sbjct: 369 AARSRARKQAYTVELEAELNQLKEENAQLKHALAELERKRKQQYFESLKSRAQPKLPKSN 428

Query: 443 EKLRIMRRNLSCPL 456
            +LR + RN SCPL
Sbjct: 429 GRLRTLMRNPSCPL 442

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1

 Score =  182 bits (461), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 154/449 (34%), Positives = 201/449 (44%), Gaps = 103/449 (22%)

Query: 30  LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANN 89
           L RQSS+YSLT DE Q TL E GK+FGSMNMDE L +IW AE+ QA  ++T         
Sbjct: 23  LARQSSLYSLTFDELQSTLGEPGKDFGSMNMDELLKNIWTAEDTQAFMTTT--------- 73

Query: 90  VINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEI 149
                              + AA    G +     L RQ SLTLP  L +KTV+EVW  +
Sbjct: 74  ------------------SSVAAPGPSGFVPGGNGLQRQGSLTLPRTLSQKTVDEVWKYL 115

Query: 150 HRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAQPPPQ 209
                     NS   +N     +A  RQ T GEMTLEDFL++AGVV+E NT    Q    
Sbjct: 116 ----------NSKEGSNGNTGTDALERQQTLGEMTLEDFLLRAGVVKEDNT----QQNEN 161

Query: 210 QQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAY-------------- 255
              G Y   NN      FG G       +S   +N+  +   AP                
Sbjct: 162 SSSGFYA--NNGAAGLEFGFGQP-NQNSISFNGNNSSMIMNQAPGLGLKVGGTMQQQQQP 218

Query: 256 ---------QQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYG 306
                    Q++PP   +     +  +  P N    G +  +        +  P     G
Sbjct: 219 HQQQLQQPHQRLPPT--IFPKQANVTFAAPVNMVNRGLFETS--------ADGPANSNMG 268

Query: 307 GRVGTGGGYASGGQPVAAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIRKKRIIDGPVE 366
           G  GT          V A SP +S A   +        + FG       R +R   G +E
Sbjct: 269 GAGGT----------VTATSPGTSSA--ENNTWSSPVPYVFG-------RGRRSNTG-LE 308

Query: 367 KVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426
           KVVERRQ+RMIKNRESAARSRARKQAYT+ELEAE+  LK  N  L++  AE+ +    + 
Sbjct: 309 KVVERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNSE- 367

Query: 427 FEELKMKPYTKAQKAKEKLRIMRRNLSCP 455
                +K ++K      K + +RR L+ P
Sbjct: 368 -----LKEFSKQPPLLAKRQCLRRTLTGP 391

Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1

 Score =  172 bits (435), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 216/444 (48%), Gaps = 83/444 (18%)

Query: 30  LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANN 89
           L RQ SIYSLT DEFQ ++   GK+FGSMNMDE L +IW+AEE QA+ S           
Sbjct: 21  LTRQGSIYSLTFDEFQSSV---GKDFGSMNMDELLKNIWSAEETQAMASGV--------- 68

Query: 90  VINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEI 149
                         +PV          G   +   L RQ SLTLP  L +KTV++VW ++
Sbjct: 69  --------------VPV---------LGGGQEGLQLQRQGSLTLPRTLSQKTVDQVWKDL 105

Query: 150 HRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVR-EQNTTPVAQPPP 208
            +    G   ++ +     ++   + RQ T GE+TLE+FL++AGVVR E      AQ   
Sbjct: 106 SKVGSSGVGGSNLSQVAQAQSQSQSQRQQTLGEVTLEEFLVRAGVVREEAQVAARAQIAE 165

Query: 209 QQQFGIYQTNNNPVMS-------PNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPP- 260
             + G +  + N   S       P      V+G    + GA    S+ V   +   +P  
Sbjct: 166 NNKGGYFGNDANTGFSVEFQQPSPRVVAAGVMG----NLGAETANSLQVQGSS---LPLN 218

Query: 261 ARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGG------- 313
             G   + Q S    P   K  G    TQ      P      +  GG VG G        
Sbjct: 219 VNGARTTYQQSQQQQPIMPKQPGFGYGTQMGQLNSP-----GIRGGGLVGLGDQSLTNNV 273

Query: 314 GYASGGQP-------VAAMSPV---SSEAVGTDQQVDGSASHQFGMDHM--GGIRKKRII 361
           G+  G          V A+SPV   SSE +G     +G +S      +M  GG+R ++  
Sbjct: 274 GFVQGASAAIPGALGVGAVSPVTPLSSEGIGKS---NGDSSSLSPSPYMFNGGVRGRK-- 328

Query: 362 DGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHL--KQA-LAEM 418
            G VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAE+ +LKEEN  L  KQA + EM
Sbjct: 329 SGTVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIMEM 388

Query: 419 ERKKKQQYFEELKMKPYTKAQKAK 442
           ++ ++ +    L+  P  K ++ +
Sbjct: 389 QKNQETEMRNLLQGGPKKKLRRTE 412

Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RYD6|AI5L1_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 1 OS=Arabidopsis thaliana GN=DPBF2 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 92/168 (54%), Gaps = 41/168 (24%)

Query: 30  LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANN 89
           +GRQ+SI SLTLDE Q    +SGK+FG+MNMDEFL ++W          +T + N N   
Sbjct: 35  VGRQNSILSLTLDEIQ---MKSGKSFGAMNMDEFLANLW----------TTVEENDN--- 78

Query: 90  VINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEI 149
                                    AH    K   L RQ SL+LP PLC+KTV+EVW EI
Sbjct: 79  ---------------------EGGGAHNDGEKPAVLPRQGSLSLPVPLCKKTVDEVWLEI 117

Query: 150 HRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVRE 197
               Q G QQ+  ++N+   + E   RQ T GE+TLEDFL+KAGVV+E
Sbjct: 118 ----QNGVQQHPPSSNSGQNSAENIRRQQTLGEITLEDFLVKAGVVQE 161

Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LES3|AI5L2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1

 Score =  112 bits (280), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 82/168 (48%), Gaps = 47/168 (27%)

Query: 30  LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANN 89
           L RQSS+YSLTLDE Q+ L  SGK  GSMN+DE L S+ + E NQ               
Sbjct: 16  LNRQSSLYSLTLDEVQNHLGSSGKALGSMNLDELLKSVCSVEANQP-------------- 61

Query: 90  VINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEI 149
                                ++   +G    Q  LSRQ SLTLP  L +KTV+EVW +I
Sbjct: 62  ---------------------SSMAVNGGAAAQEGLSRQGSLTLPRDLSKKTVDEVWKDI 100

Query: 150 HRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVRE 197
            + K GG               E   +QPT GEMTLED L+KAGVV E
Sbjct: 101 QQNKNGGSAH------------ERRDKQPTLGEMTLEDLLLKAGVVTE 136

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q2|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana GN=ABF4 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 87/170 (51%), Gaps = 28/170 (16%)

Query: 30  LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANN 89
           L RQSS+YSLT DE Q+TL   GK+FGSMNMDE L SIW AEE QA+             
Sbjct: 34  LARQSSVYSLTFDELQNTLGGPGKDFGSMNMDELLKSIWTAEEAQAM------------- 80

Query: 90  VINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEI 149
               AM++           T  A    G      +L RQ SLTLP  + +KTV+EVW  +
Sbjct: 81  ----AMTSAPAA-------TAVAQPGAGIPPPGGNLQRQGSLTLPRTISQKTVDEVWKCL 129

Query: 150 HRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQN 199
                     +     +NV       RQ T GEMTLE+FL +AGVVRE N
Sbjct: 130 ITKDGNMEGSSGGGGESNV----PPGRQQTLGEMTLEEFLFRAGVVREDN 175

Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q3|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 98/174 (56%), Gaps = 17/174 (9%)

Query: 30  LGRQSSIYSLTLDEFQHTLCES-GKNFGSMNMDEFLTSIWNAEENQAI----NSSTQDSN 84
           L RQ+S++SLT DEFQ++     GK+FGSMNMDE L +IW AEE+ ++     S T  SN
Sbjct: 27  LTRQNSVFSLTFDEFQNSWGGGIGKDFGSMNMDELLKNIWTAEESHSMMGNNTSYTNISN 86

Query: 85  INANNVINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEE 144
            N+ N + N   NN     + V   +      G      SL RQ SLTLP  + +K V++
Sbjct: 87  GNSGNTVINGGGNNIGGLAVGVGGESGGFFTGG------SLQRQGSLTLPRTISQKRVDD 140

Query: 145 VWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQ 198
           VW E+ +    G   N   N      P+   RQ T GEMTLE+FL++AGVVRE+
Sbjct: 141 VWKELMKEDDIG---NGVVNGGTSGIPQ---RQQTLGEMTLEEFLVRAGVVREE 188

Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica GN=TRAB1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 71/104 (68%), Gaps = 3/104 (2%)

Query: 354 GIRKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413
           G+ + R   G VEKVVERRQRRMIKNRESAARSRARKQAYT+ELEAE+ +LKE+N  L++
Sbjct: 215 GVIRGRRSGGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQK 274

Query: 414 ALAEMERKKKQQYFEELKMKPYTKA--QKAKEKLRIMRRNLSCP 455
              E+   +K  +F E++     +A      +K R +RR L+ P
Sbjct: 275 KQEEIMEMQK-NFFPEMQKNQVLEAVNNPYGQKKRCLRRTLTGP 317

Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C5Q2|AI5L3_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 82/201 (40%), Gaps = 76/201 (37%)

Query: 30  LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANN 89
           L RQ+S+YSL L E Q  L  SGK  GSMN+DE L ++                      
Sbjct: 16  LTRQNSLYSLKLHEVQTHLGSSGKPLGSMNLDELLKTV---------------------- 53

Query: 90  VINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEI 149
                         LP  E                L RQ SLTLP  L +KTV+EVW +I
Sbjct: 54  --------------LPPAEE--------------GLVRQGSLTLPRDLSKKTVDEVWRDI 85

Query: 150 HRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVRE-----QNTTPVA 204
            + K           N N  +     +QPT GE+TLED L++AGVV E     +N   +A
Sbjct: 86  QQDK-----------NGNGTSTTTTHKQPTLGEITLEDLLLRAGVVTETVVPQENVVNIA 134

Query: 205 ----------QPPPQQQFGIY 215
                     QP  QQ F  Y
Sbjct: 135 SNGQWVEYHHQPQQQQGFMTY 155

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMM7|AI5L8_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 8 OS=Arabidopsis thaliana GN=BZIP15 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 69/166 (41%), Gaps = 58/166 (34%)

Query: 28  TLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINA 87
           T L RQ SIYS T+D+FQ +L   G + GSMNMDE +  I +AEE               
Sbjct: 18  TSLSRQGSIYSWTVDQFQTSL---GLDCGSMNMDELVKHISSAEE--------------- 59

Query: 88  NNVINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWS 147
                                     T  GS        RQ S TLP  L ++ V EVW 
Sbjct: 60  --------------------------TQEGS-------QRQGSTTLPPTLSKQNVGEVWK 86

Query: 148 EIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAG 193
            I   K        +NNN  V N      Q T GE+TLE+F I+AG
Sbjct: 87  SITEEKH-------TNNNGGVTNITHLQGQQTLGEITLEEFFIRAG 125

Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
449521124	443	PREDICTED: protein ABSCISIC ACID-INSENSI	0.936	0.963	0.582	1e-118
449463004	436	PREDICTED: protein ABSCISIC ACID-INSENSI	0.918	0.961	0.586	1e-117
302746499	436	abscisic acid insensitive [Prunus armeni	0.892	0.933	0.582	1e-109
168988212	747	abscisic acid insensitive [Cucumis sativ	0.881	0.538	0.571	1e-106
359482002	400	PREDICTED: protein ABSCISIC ACID-INSENSI	0.861	0.982	0.552	1e-104
255575677	403	DNA binding protein, putative [Ricinus c	0.857	0.970	0.543	1e-100
356537097	903	PREDICTED: cell division protein ftsZ ho	0.901	0.455	0.532	1e-97
356570847	387	PREDICTED: protein ABSCISIC ACID-INSENSI	0.824	0.971	0.513	9e-97
147805356	392	hypothetical protein VITISV_009883 [Viti	0.793	0.923	0.536	1e-93
297740105	353	unnamed protein product [Vitis vinifera]	0.758	0.980	0.520	2e-93

>gi|449521124|ref|XP_004167581.1| PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like [Cucumis sativus]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 275/472 (58%), Positives = 331/472 (70%), Gaps = 45/472 (9%)

Query: 1   MVAPEPETLSQGEVESALRADQH--QKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSM 58
           MV  E + +S  EVES L+++Q   Q   + LGRQSSIYSLTLDEFQHTLCESGKNFGSM
Sbjct: 1   MVVKESDMISHDEVESPLQSEQQLKQHRFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSM 60

Query: 59  NMDEFLTSIWNAEENQAINSSTQDSNINANNV-INNAMSNNHTVQHLPVNETTAATTAHG 117
           NMDEFLTSIW AEENQAIN+S   + + A    ++NA        HLPV  +  A+    
Sbjct: 61  NMDEFLTSIWTAEENQAINASQSGTAVVAAVAALSNAQG------HLPV--SGGASMEKR 112

Query: 118 SIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQ 177
           +I KQ SL RQ SLTLPAPLCRKTV+EVWSEIH+ +QG    NS++ N N +NPE+A+RQ
Sbjct: 113 NIEKQASLPRQGSLTLPAPLCRKTVDEVWSEIHKSQQG-RNHNSNSGNANSQNPESATRQ 171

Query: 178 PTFGEMTLEDFLIKAGVVREQNTTP-VAQP-PPQQQFGIYQTNNNPVMSPNFGTGHVLGL 235
           PTFGEMTLEDFLIKAGVVRE      V QP PP QQ+G+YQ N+N  +   + +  ++GL
Sbjct: 172 PTFGEMTLEDFLIKAGVVREHCIGGGVPQPLPPSQQYGMYQ-NSNHTIGAGYVSRPIMGL 230

Query: 236 -TGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQP 294
            T  + G ++  +       YQ +P     +G   +S + G  N K +  +S+     QP
Sbjct: 231 NTSAAGGGASGNAAAGGITTYQPVPQGGSTIGD--TSGFAG--NGKRNSVFSS-----QP 281

Query: 295 PPSPPPLAVCYGGRVGTGGGYASG------GQPV---AAMSPVSSEAVGTDQQVDGSASH 345
           PP     AVCYGGRV  GGG   G       QP+   A +SPVS E + T+Q VD  +S+
Sbjct: 282 PP-----AVCYGGRVVNGGGGGGGGGGYPPAQPMGLAAPVSPVSPEGMCTNQ-VD--SSN 333

Query: 346 QFGMDHMGGIR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL 404
           QFG+D +GG+R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL
Sbjct: 334 QFGLD-LGGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL 392

Query: 405 KEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL 456
           KEENAHLKQALAE+ERK+KQQY EE K   +TKAQ+AKEKLR+MRR LSCPL
Sbjct: 393 KEENAHLKQALAELERKRKQQYLEETK-NFHTKAQRAKEKLRVMRRTLSCPL 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463004|ref|XP_004149224.1| PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like [Cucumis sativus]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 272/464 (58%), Positives = 327/464 (70%), Gaps = 45/464 (9%)

Query: 9   LSQGEVESALRADQH--QKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTS 66
           +S  EVES L+++Q   Q   + LGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTS
Sbjct: 2   ISHDEVESPLQSEQQLKQHRFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTS 61

Query: 67  IWNAEENQAINSSTQDSNINANNV-INNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSL 125
           IW AEENQAIN+S   + + A    ++NA        HLPV  +  A+    +I KQ SL
Sbjct: 62  IWTAEENQAINASQSGTAVVAAVAALSNAQG------HLPV--SGGASMEKRNIEKQASL 113

Query: 126 SRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTL 185
            RQ SLTLPAPLCRKTV+EVWSEIH+ +QG    NS++ N N +NPE+A+RQPTFGEMTL
Sbjct: 114 PRQGSLTLPAPLCRKTVDEVWSEIHKSQQG-RNHNSNSGNANSQNPESATRQPTFGEMTL 172

Query: 186 EDFLIKAGVVREQNTTP-VAQP-PPQQQFGIYQTNNNPVMSPNFGTGHVLGL-TGVSNGA 242
           EDFLIKAGVVRE      V QP PP QQ+G+YQ N+N  +   + +  ++GL T  + G 
Sbjct: 173 EDFLIKAGVVREHCIGGGVPQPLPPSQQYGMYQ-NSNHTIGAGYVSRPIMGLNTSAAGGG 231

Query: 243 SNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLA 302
           ++  +       YQ +P     +G   +S + G  N K +  +S+     QPPP     A
Sbjct: 232 ASGNAAAGGITTYQPVPQGGSTIGD--TSGFAG--NGKRNSVFSS-----QPPP-----A 277

Query: 303 VCYGGRVGTGGGYASG------GQPV---AAMSPVSSEAVGTDQQVDGSASHQFGMDHMG 353
           VCYGGRV  GGG   G       QP+   A +SPVS E + T+Q VD  +S+QFG+D +G
Sbjct: 278 VCYGGRVVNGGGGGGGGGGYPPAQPMGLAAPVSPVSPEGMCTNQ-VD--SSNQFGLD-LG 333

Query: 354 GIR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK 412
           G+R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK
Sbjct: 334 GLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK 393

Query: 413 QALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL 456
           QALAE+ERK+KQQY EE K   +TKAQ+AKEKLR+MRR LSCPL
Sbjct: 394 QALAELERKRKQQYLEETK-NFHTKAQRAKEKLRVMRRTLSCPL 436

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302746499|gb|ADL62859.1| abscisic acid insensitive [Prunus armeniaca]

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 257/441 (58%), Positives = 311/441 (70%), Gaps = 34/441 (7%)

Query: 27  LTLLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNIN 86
            + LGRQSSIYSLTLDEFQHTLCE+GKNFGSMNMDEFLTSIW AEENQAINS+  + N N
Sbjct: 19  FSSLGRQSSIYSLTLDEFQHTLCENGKNFGSMNMDEFLTSIWTAEENQAINSNHTNINNN 78

Query: 87  ANNVINNAMSNNHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVW 146
            N+  +N  + +    H+P  E +    A  +I KQPSL RQ SLTLP PLCRKTV+EVW
Sbjct: 79  HNHHNSNINNID---AHMPSAEASEEKAA--AIAKQPSLPRQGSLTLPGPLCRKTVDEVW 133

Query: 147 SEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVA-- 204
           SEIH+G+Q   QQNS ++N+ V+N E A RQPTFGEMTLEDFL+KAGVVRE ++   A  
Sbjct: 134 SEIHKGQQA-KQQNSHSSNDGVQNSEFAPRQPTFGEMTLEDFLVKAGVVREPDSMLAAGA 192

Query: 205 -----QPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMP 259
                    QQQ+G+YQ N+N  + P+F    V+G+       ++  +     P YQ MP
Sbjct: 193 VPPPQPQQQQQQYGMYQ-NSNQAVGPSFANRPVMGMGAAGTAGASTSTAAG-MPNYQGMP 250

Query: 260 PARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGG 319
              G     +SS Y    N K +G Y         P  PPP AVC+GGRV  GGG  + G
Sbjct: 251 -QNGATVVAESSGYAA--NGKRNGAY---------PAVPPPQAVCFGGRVVNGGGGYAAG 298

Query: 320 QPV---AAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIR-KKRIIDGPVEKVVERRQRR 375
           QP+   A +SPVSS+ + T Q V+ S   QFG D MGG+R +KRI+DGPVEKVVERRQRR
Sbjct: 299 QPIGMAAPVSPVSSDGMCTSQ-VENSGG-QFGFD-MGGLRGRKRILDGPVEKVVERRQRR 355

Query: 376 MIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPY 435
           MIKNRESAARSRARKQAYTVELEAELNQL+EENAHLKQALAE+ERK+KQQYF+E++ +  
Sbjct: 356 MIKNRESAARSRARKQAYTVELEAELNQLREENAHLKQALAELERKRKQQYFDEMQTRVQ 415

Query: 436 TKAQKAKEKLRIMRRNLSCPL 456
           ++AQKAKEKLR++RR  SCPL
Sbjct: 416 SRAQKAKEKLRVLRRCHSCPL 436

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168988212|gb|ACA35280.1| abscisic acid insensitive [Cucumis sativus]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 255/446 (57%), Positives = 309/446 (69%), Gaps = 44/446 (9%)

Query: 1   MVAPEPETLSQGEVESALRADQH--QKTLTLLGRQSSIYSLTLDEFQHTLCESGKNFGSM 58
           MV  E + +S  EVES L+++Q   Q   + LGRQSSIYSLTLDEFQHTLCESGKNFGSM
Sbjct: 1   MVVKESDMISHDEVESPLQSEQQLKQHRFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSM 60

Query: 59  NMDEFLTSIWNAEENQAINSSTQDSNINANNV-INNAMSNNHTVQHLPVNETTAATTAHG 117
           NMDEFLTSIW AEENQAIN+S   + + A    ++NA        HLPV  +  A+    
Sbjct: 61  NMDEFLTSIWTAEENQAINASQSGTAVVAAVAALSNAQG------HLPV--SGGASMEKR 112

Query: 118 SIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQ 177
           +I KQ SL RQ SLTLPAPLCRKTV+EVWSEIH+ +QG    NS++ N N +NPE+A+RQ
Sbjct: 113 NIEKQASLPRQGSLTLPAPLCRKTVDEVWSEIHKSQQG-RNHNSNSGNANSQNPESATRQ 171

Query: 178 PTFGEMTLEDFLIKAGVVREQNTTP-VAQP-PPQQQFGIYQTNNNPVMSPNFGTGHVLGL 235
           PTFGEMTLEDFLIKAGVVRE      V QP PP QQ+G+YQ N+N  +   + +  ++GL
Sbjct: 172 PTFGEMTLEDFLIKAGVVREHCIGGGVPQPLPPSQQYGMYQ-NSNHTIGAGYVSRPIMGL 230

Query: 236 -TGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQP 294
            T  + G ++  +       YQ +P     +G   +S + G  N K +  +S+     QP
Sbjct: 231 NTSAAGGGASGNAAAGGITTYQPVPQGGSTIG--DTSGFAG--NGKRNSVFSS-----QP 281

Query: 295 PPSPPPLAVCYGGRVGTGGGYASG------GQPV---AAMSPVSSEAVGTDQQVDGSASH 345
           PP     AVCYGGRV  GGG   G       QP+   A +SPVS E + T+Q VD  +S+
Sbjct: 282 PP-----AVCYGGRVVNGGGGGGGGGGYPPAQPMGLAAPVSPVSPEGMCTNQ-VD--SSN 333

Query: 346 QFGMDHMGGIR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL 404
           QFG+D +GG+R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL
Sbjct: 334 QFGLD-LGGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL 392

Query: 405 KEENAHLKQALAEMERKKKQQYFEEL 430
           KEENAHLKQALAE+ERK+KQQ F+ L
Sbjct: 393 KEENAHLKQALAELERKRKQQPFQFL 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482002|ref|XP_002276783.2| PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like [Vitis vinifera]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/463 (55%), Positives = 300/463 (64%), Gaps = 70/463 (15%)

Query: 1   MVAPEPETLSQGEVESALRADQHQKTLTL--LGRQSSIYSLTLDEFQHTLCESGKNFGSM 58
           MV  E ETLSQ EVES L+ DQ  K   +  LGRQSSIYSLTLDEFQHTLCE+GKNFGSM
Sbjct: 1   MVGSESETLSQSEVESGLQEDQQPKNHGMPSLGRQSSIYSLTLDEFQHTLCENGKNFGSM 60

Query: 59  NMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGS 118
           NMDEFLTSIW AEENQA N          N++ N+ MS + T    P             
Sbjct: 61  NMDEFLTSIWTAEENQATN---------FNHISNSQMSLSETSMEKP------------- 98

Query: 119 IVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQP 178
           I KQPSL+RQ SL+LPAP C+KTV+EVWSEIH+ +            ++V N E+A RQP
Sbjct: 99  IAKQPSLARQGSLSLPAPFCQKTVDEVWSEIHKAQ-------QQQQQDSVHNAESAHRQP 151

Query: 179 TFGEMTLEDFLIKAGVVREQNT-TPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTG 237
           T GEMTLEDFLI+AGVVREQ T T  AQ   Q Q+G+YQ NN   +SP F          
Sbjct: 152 TLGEMTLEDFLIRAGVVREQPTATAPAQHQQQHQYGLYQNNN--TISPTFAR-------- 201

Query: 238 VSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPS 297
                           ++Q +P + G  G  +SS Y G  N K +GGY            
Sbjct: 202 ----PVMGMGGGAGVGSFQTLPQSSGAAG--ESSGYAG--NGKRNGGY------------ 241

Query: 298 PPPLAVCYGGRVGTGGGYASGGQPVA---AMSPVSSEAVGTDQQVDGSASHQFGMDHMGG 354
            P  + C GGRVG GGG    GQ +A    +SPVSS+ +  +Q +D +A  QFG+D +GG
Sbjct: 242 -PKTSACLGGRVGNGGGVYGPGQTLAMESTVSPVSSDGMCPNQ-IDNTAG-QFGLD-VGG 297

Query: 355 IR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413
           +R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEEN  L+Q
Sbjct: 298 LRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTLLQQ 357

Query: 414 ALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL 456
           ALA+ ERK+KQQY EELKMK  TKA+KAKEKL+ MR+  SCPL
Sbjct: 358 ALADFERKRKQQYLEELKMKTQTKAEKAKEKLKKMRKTWSCPL 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575677|ref|XP_002528738.1| DNA binding protein, putative [Ricinus communis] gi|223531832|gb|EEF33650.1| DNA binding protein, putative [Ricinus communis]

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 237/436 (54%), Positives = 282/436 (64%), Gaps = 45/436 (10%)

Query: 1   MVAPEPETLSQGEVESALRADQHQKTLTL--LGRQSSIYSLTLDEFQHTLCESGKNFGSM 58
           MV  E E +SQ EV+S L+ DQ  + L    LGRQSSIYSLTLDEFQHTLCESGKNFGSM
Sbjct: 1   MVVTESEVISQNEVDSPLQPDQQPRNLPFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSM 60

Query: 59  NMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGS 118
           NMDEFLTSIWNAEENQA  +S+ D   N NN   N +S+ +   HL  N+       H +
Sbjct: 61  NMDEFLTSIWNAEENQATATSSSDRINNTNNNRGNRLSSFN--DHLSAND-------HRA 111

Query: 119 IVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQ--GGHQQNSSNNNNNVRNPEAASR 176
           I +QPSL RQ SLTLPAPLCRKTV+EVWSEIHR +Q   GH   SS+ +NN++NPE+A+R
Sbjct: 112 ISRQPSLPRQGSLTLPAPLCRKTVDEVWSEIHREQQRGQGHSSTSSSGDNNMQNPESAAR 171

Query: 177 QPTFGEMTLEDFLIKAGVVREQNTTPVAQPPP---QQQFGIYQ---TNNNPVMSPNFGTG 230
           QPTFGEMTLEDFL+KAG+VRE  +       P   QQQ+ +Y    TNNN  +   F + 
Sbjct: 172 QPTFGEMTLEDFLVKAGIVREHGSPAAPSILPSHQQQQYVLYNQSVTNNNHAIGTGFVSR 231

Query: 231 HVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQ 290
            VLG++G   G  N       +  YQ M P  G  G          T  + +G       
Sbjct: 232 PVLGVSGGGTGGGN-------SVGYQTMAPQSGAAGE---------TPGRNAGFI----- 270

Query: 291 PPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAAMSPVSSEAVGTDQQVDGSASHQFGMD 350
            PQ   +P           G G     G   V  +SPVSS+A+  +  VD +A +QFG+D
Sbjct: 271 -PQGAVAPSGSVYGGRVGNGGGYAPTEGMGVVGQVSPVSSDAM-VNTSVDNTA-NQFGID 327

Query: 351 HMGGIR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 409
            MGG+R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEEN 
Sbjct: 328 -MGGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENK 386

Query: 410 HLKQALAEMERKKKQQ 425
            L+  L E+ERK+KQQ
Sbjct: 387 QLRHVLTELERKRKQQ 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537097|ref|XP_003537067.1| PREDICTED: cell division protein ftsZ homolog 2-1, chloroplastic-like [Glycine max]

 Score =  363 bits (931), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 262/492 (53%), Positives = 314/492 (63%), Gaps = 81/492 (16%)

Query: 1   MVAPEPETLSQGEVESALRADQHQKT----------LTLLGRQSS-IYSLTLDEFQHTLC 49
           MV PE +  SQ EVES L+ ++ Q+            + LGRQSS IYSLTLDEFQHTL 
Sbjct: 1   MVVPESQMNSQNEVESPLQLEEQQQQQNNNNNKNHPFSSLGRQSSSIYSLTLDEFQHTLW 60

Query: 50  ESGKNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNET 109
           E+GKNFGSMNMDEFL+SIW+AEENQ               V+NN++SN++       N +
Sbjct: 61  ENGKNFGSMNMDEFLSSIWSAEENQ---------------VLNNSVSNHN-------NLS 98

Query: 110 TAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNN-- 167
             A+T  G I K+PSL RQ SLTLPAPLCRKTV+EVWSEIH+G+Q   QQ  +NN NN  
Sbjct: 99  LEASTEKGVIRKEPSLPRQGSLTLPAPLCRKTVDEVWSEIHKGQQSQQQQQQNNNTNNNC 158

Query: 168 -------VRNPEAASRQPTFGEMTLEDFLIKAGVVREQN---TTPVAQPPPQ--QQFGIY 215
                  V+N E+A RQPTFGEMTLEDFL+KAGVVREQ      PV     Q  QQ+G+Y
Sbjct: 159 GSNNNNNVQNTESAPRQPTFGEMTLEDFLVKAGVVREQGGMAAMPVQASAHQHVQQYGMY 218

Query: 216 QTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSD----QSS 271
             NNNP M  +F    V+G+ G     S   +V   AP YQ +P     VG      +SS
Sbjct: 219 -PNNNPTMGASFVGRPVMGMAGGVRVGSGGRNVV--APPYQAVPQGGVGVGVGGAIAESS 275

Query: 272 AYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGG-YA--SGGQPVAAMSPV 328
            Y G  N K   GY        PP +P    VC+GGRV  GGG YA  S    VA +SPV
Sbjct: 276 GYAG--NGKRDVGY--------PPGAP---GVCFGGRVVNGGGGYAAVSNMGVVAPVSPV 322

Query: 329 SSEAVGTDQQVDGSASHQFGMDHMGGIR-KKRIIDGPVEKVVERRQRRMIKNRESAARSR 387
           S E +GT +   G    QFGMD M  +R +KR++DGPVEKVVERRQRRMIKNRESAARSR
Sbjct: 323 SPEGIGTGENSGG----QFGMD-MSMLRGRKRVLDGPVEKVVERRQRRMIKNRESAARSR 377

Query: 388 ARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE-ELKMKPYTKAQKAKEKLR 446
           ARKQAYTVELEAELNQLKEEN  LK ALA++ER++KQQ+ + E+  +  T AQKAK+KLR
Sbjct: 378 ARKQAYTVELEAELNQLKEENGQLKLALADLERRRKQQHLDQEVNGRVQTNAQKAKKKLR 437

Query: 447 ----IMRRNLSC 454
                +RRNL+C
Sbjct: 438 SLRKTLRRNLTC 449

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570847|ref|XP_003553595.1| PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like [Glycine max]

 Score =  360 bits (923), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 240/467 (51%), Positives = 287/467 (61%), Gaps = 91/467 (19%)

Query: 1   MVAPEPETLSQGEVESALRAD---QHQKTL----TLLGRQ-SSIYSLTLDEFQHTLCESG 52
           MV  E E  SQGEVES L+ +    H   L    + LGRQ SSIYSLTLDEFQH+LCESG
Sbjct: 1   MVIEEGEMKSQGEVESWLQQEAKKNHHSPLFSSSSYLGRQTSSIYSLTLDEFQHSLCESG 60

Query: 53  KNFGSMNMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAA 112
           KNFGSMNMDEFL+SIWNAEEN                  + A++NN+    +P++ T   
Sbjct: 61  KNFGSMNMDEFLSSIWNAEEN------------------SQAITNNN----VPLSSTLTI 98

Query: 113 TTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNV--RN 170
                 + KQPSL RQ SL+LPAPLCRKTV+EVWS+I +      +QN +NN +NV   N
Sbjct: 99  ------LRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQK------EQNKNNNISNVLNDN 146

Query: 171 PEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAQPPPQQQFGIYQTNNNPVMSPNFGTG 230
            E+A RQPTFGEMTLEDFL+KAGVVRE    P        Q      NNN  M+P+F   
Sbjct: 147 TESAPRQPTFGEMTLEDFLVKAGVVRETTCAPPLPVSHSHQPHYANNNNNVAMAPSFVGR 206

Query: 231 HVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQ 290
           HV        GA +N    V AP YQQ      VVG  ++S   G  +  G G +     
Sbjct: 207 HV--------GAVSN----VVAPGYQQ------VVG--EASGGYGKRDHNGGGYHCFGGG 246

Query: 291 PPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAAMSPVSSEAVGTDQQVDGSASHQFGMD 350
                  P          +G GG       PV+  +  SS+ +G D         QFG+D
Sbjct: 247 GGGYGVGPT---------MGMGG-------PVSPAN--SSDGIGND-------GGQFGLD 281

Query: 351 HMGGIR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 409
            MGG+R +KR++DGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL+EEN+
Sbjct: 282 -MGGLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENS 340

Query: 410 HLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL 456
            LKQALAE+ER +KQQ FEE+ +   TKAQKAKEKLR +RRN+SCPL
Sbjct: 341 QLKQALAELERGRKQQCFEEVNVSVKTKAQKAKEKLRALRRNMSCPL 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805356|emb|CAN71955.1| hypothetical protein VITISV_009883 [Vitis vinifera]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 233/434 (53%), Positives = 273/434 (62%), Gaps = 72/434 (16%)

Query: 1   MVAPEPETLSQGEVESALRADQHQKTLTL--LGRQSSIYSLTLDEFQHTLCESGKNFGSM 58
           MV  E ETLSQ EVES L+ DQ  K   +  LGRQSSIYSLTLDEFQHTLCE+GKNFGSM
Sbjct: 1   MVGSESETLSQSEVESGLQEDQQPKNHGMPSLGRQSSIYSLTLDEFQHTLCENGKNFGSM 60

Query: 59  NMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGS 118
           NMDEFLTS+W AEENQA N          N++ N+ MS   T    P             
Sbjct: 61  NMDEFLTSVWTAEENQATN---------FNHISNSLMSLRETSMEKP------------- 98

Query: 119 IVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQP 178
           I KQPSL+RQ SL+LPAP C+KTV+EVWSEIH+ +            ++V N E+A RQP
Sbjct: 99  IAKQPSLARQGSLSLPAPFCQKTVDEVWSEIHKAQ-------QQQQQDSVHNAESAHRQP 151

Query: 179 TFGEMTLEDFLIKAGVVREQNT-TPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTG 237
           T GEMTLEDFLI+AGVVREQ T T  AQ   Q Q+G+YQ NN   +SP F          
Sbjct: 152 TLGEMTLEDFLIRAGVVREQPTATAPAQHQQQHQYGLYQNNN--TISPTFAR-------- 201

Query: 238 VSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPS 297
                           ++Q +P + G  G  +SS Y G  N K +GGY            
Sbjct: 202 ----PVMGMGGGAGVGSFQTLPQSSGAAG--ESSGYXG--NGKRNGGY------------ 241

Query: 298 PPPLAVCYGGRVGTGGGYASGGQPVA---AMSPVSSEAVGTDQQVDGSASHQFGMDHMGG 354
            P  + C GGRVG GGG    GQ +A    +SPVSS+ +  +Q +D +A  QFG+D +G 
Sbjct: 242 -PKTSACXGGRVGNGGGVYGPGQTLAMESTVSPVSSDGMCPNQ-IDNTAG-QFGLD-VGX 297

Query: 355 IR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413
           +R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEEN  L+Q
Sbjct: 298 LRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTLLQQ 357

Query: 414 ALAE--MERKKKQQ 425
           ALAE   ERK+KQQ
Sbjct: 358 ALAEADFERKRKQQ 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740105|emb|CBI30287.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 241/463 (52%), Positives = 279/463 (60%), Gaps = 117/463 (25%)

Query: 1   MVAPEPETLSQGEVESALRADQHQKTLTL--LGRQSSIYSLTLDEFQHTLCESGKNFGSM 58
           MV  E ETLSQ EVES L+ DQ  K   +  LGRQSSIYSLTLDEFQHTLCE+GKNFGSM
Sbjct: 1   MVGSESETLSQSEVESGLQEDQQPKNHGMPSLGRQSSIYSLTLDEFQHTLCENGKNFGSM 60

Query: 59  NMDEFLTSIWNAEENQAINSSTQDSNINANNVINNAMSNNHTVQHLPVNETTAATTAHGS 118
           NMDEFLTSIW AEENQA N               N +SN+                    
Sbjct: 61  NMDEFLTSIWTAEENQATNF--------------NHISNSQI------------------ 88

Query: 119 IVKQPSLSRQASLTLPAPLCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQP 178
                 L+RQ SL+LPAP C+KTV+EVWSEIH+ +            ++V N E+A RQP
Sbjct: 89  ------LARQGSLSLPAPFCQKTVDEVWSEIHKAQ-------QQQQQDSVHNAESAHRQP 135

Query: 179 TFGEMTLEDFLIKAGVVREQNT-TPVAQPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTG 237
           T GEMTLEDFLI+AGVVREQ T T  AQ   Q Q+G+YQ NN                  
Sbjct: 136 TLGEMTLEDFLIRAGVVREQPTATAPAQHQQQHQYGLYQNNN------------------ 177

Query: 238 VSNGASNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPS 297
                                        + +SS Y G  N K +GGY            
Sbjct: 178 -----------------------------TIKSSGYAG--NGKRNGGY------------ 194

Query: 298 PPPLAVCYGGRVGTGGGYASGGQPVA---AMSPVSSEAVGTDQQVDGSASHQFGMDHMGG 354
            P  + C GGRVG GGG    GQ +A    +SPVSS+ +  +Q +D +A  QFG+D +GG
Sbjct: 195 -PKTSACLGGRVGNGGGVYGPGQTLAMESTVSPVSSDGMCPNQ-IDNTAG-QFGLD-VGG 250

Query: 355 IR-KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413
           +R +KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEEN  L+Q
Sbjct: 251 LRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTLLQQ 310

Query: 414 ALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL 456
           ALA+ ERK+KQQY EELKMK  TKA+KAKEKL+ MR+  SCPL
Sbjct: 311 ALADFERKRKQQYLEELKMKTQTKAEKAKEKLKKMRKTWSCPL 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	456
TAIR|locus:2049425	442	ABI5 "ABA INSENSITIVE 5" [Arab	0.453	0.468	0.511	1e-88
TAIR|locus:2076018	331	DPBF2 "AT3G44460" [Arabidopsis	0.206	0.283	0.618	1.6e-54
UNIPROTKB|Q8RZ35	388	P0489B03.11 "Putative ABA resp	0.289	0.340	0.492	1.6e-52
UNIPROTKB|Q6ZDF3	318	TRAB1 "bZIP transcription fact	0.221	0.317	0.519	1e-39
TAIR|locus:2118969	454	ABF3 "AT4G34000" [Arabidopsis	0.392	0.394	0.355	1.3e-38
TAIR|locus:2103665	297	AREB3 "ABA-responsive element	0.208	0.319	0.495	2.7e-27
TAIR|locus:2063275	262	EEL "AT2G41070" [Arabidopsis t	0.138	0.240	0.640	3.8e-26
TAIR|locus:2159986	370	AT5G42910 "AT5G42910" [Arabido	0.177	0.218	0.395	6.9e-22
TAIR|locus:2172507	315	AT5G44080 [Arabidopsis thalian	0.239	0.346	0.457	4.8e-15
TAIR|locus:2024224	270	GBF4 "G-box binding factor 4"	0.155	0.262	0.493	2.2e-11

TAIR|locus:2049425 ABI5 "ABA INSENSITIVE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
 Identities = 111/217 (51%), Positives = 132/217 (60%)

Query:   243 SNNGSVPVPAPAYQQMPPARGVVGSDQSSAYMGPTNEKGS-GGYSA-TXXXXXXXXXXXX 300
             + N S  +PA A QQ+    GV       ++ G     G   GY+  T            
Sbjct:   233 NQNPSSVIPAAAQQQL---YGVFQGTGDPSFPGQAMGVGDPSGYAKRTGGGGYQQAPPVQ 289

Query:   301 LAVCYXXXXXXXXXXXXXXQPVAAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIR-KKR 359
               VCY                V  +SPVSS+ +G  Q VD     Q+G+D MGG+R +KR
Sbjct:   290 AGVCYGGGVGFGAGGQQMGM-VGPLSPVSSDGLGHGQ-VDNIGG-QYGVD-MGGLRGRKR 345

Query:   360 IIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEME 419
             ++DGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA LK ALAE+E
Sbjct:   346 VVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHALAELE 405

Query:   420 RKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLSCPL 456
             RK+KQQYFE LK +   K  K+  +LR + RN SCPL
Sbjct:   406 RKRKQQYFESLKSRAQPKLPKSNGRLRTLMRNPSCPL 442

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048316 "seed development" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IEP;RCA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2076018 DPBF2 "AT3G44460" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
 Identities = 60/97 (61%), Positives = 74/97 (76%)

Query:   357 KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALA 416
             KKRIIDGP E ++ERRQRRMIKNRESAARSRAR+QAYTVELE ELN L EEN  LK+ + 
Sbjct:   235 KKRIIDGPPEILMERRQRRMIKNRESAARSRARRQAYTVELELELNNLTEENTKLKEIVE 294

Query:   417 EMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRNLS 453
             E E+K++Q+     + K  TK +K+ +KLR +RR  S
Sbjct:   295 ENEKKRRQEIIS--RSKQVTK-EKSGDKLRKIRRMAS 328

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|Q8RZ35 P0489B03.11 "Putative ABA response element binding factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 254 (94.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
 Identities = 66/134 (49%), Positives = 80/134 (59%)

Query:   322 VAAMSPVSSEAVGTDQQVDGSASHQFGMDHMGGIRKK-RIIDGPVEKVVERRQRRMIKNR 380
             +  +SP SS+ +      D       GM    G RK+    DG  EK VERRQRRMIKNR
Sbjct:   254 MVVVSPGSSDGMSAMTHADMMNCIGNGMMIENGTRKRPHREDGCAEKTVERRQRRMIKNR 313

Query:   381 ESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQK 440
             ESAARSRARKQAYTVELEAELN LK+ENA LK+A   +   KKQ   E++ M+   +   
Sbjct:   314 ESAARSRARKQAYTVELEAELNYLKQENARLKEAEKTVLLTKKQMLVEKM-MEQSKEKMN 372

Query:   441 AKEKLRIMRRNLSC 454
             A      +RR+ SC
Sbjct:   373 ANRGGSQLRRSGSC 386

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

UNIPROTKB|Q6ZDF3 TRAB1 "bZIP transcription factor TRAB1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 232 (86.7 bits), Expect = 1.0e-39, Sum P(3) = 1.0e-39
 Identities = 54/104 (51%), Positives = 71/104 (68%)

Query:   354 GIRKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413
             G+ + R   G VEKVVERRQRRMIKNRESAARSRARKQAYT+ELEAE+ +LKE+N  L++
Sbjct:   215 GVIRGRRSGGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQK 274

Query:   414 ALAEMERKKKQQYFEELKMKPYTKAQKAK--EKLRIMRRNLSCP 455
                E+   +K  +F E++     +A      +K R +RR L+ P
Sbjct:   275 KQEEIMEMQKN-FFPEMQKNQVLEAVNNPYGQKKRCLRRTLTGP 317

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2118969 ABF3 "AT4G34000" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 69/194 (35%), Positives = 98/194 (50%)

Query:    30 LGRQSSIYSLTLDEFQHTLCES-GKNFGSMNMDEFLTSIWNAEENQAI--NSSTQDXXXX 86
             L RQ+S++SLT DEFQ++     GK+FGSMNMDE L +IW AEE+ ++  N+++      
Sbjct:    27 LTRQNSVFSLTFDEFQNSWGGGIGKDFGSMNMDELLKNIWTAEESHSMMGNNTSYTNISN 86

Query:    87 XXXXXXXXXXXXHTVQHLPVNETTAATTAHGSIVKQPSLSRQASLTLPAPLCRKTVEEVW 146
                         + +  L V     +    G      SL RQ SLTLP  + +K V++VW
Sbjct:    87 GNSGNTVINGGGNNIGGLAVGVGGES----GGFFTGGSLQRQGSLTLPRTISQKRVDDVW 142

Query:   147 SEIHRGKQGGHQQXXXXXXXXVRNPEAASRQPTFGEMTLEDFLIKAGVVREQNTTPVAXX 206
              E+ +    G+             P+   RQ T GEMTLE+FL++AGVVRE+   PV   
Sbjct:   143 KELMKEDDIGNGVVNGGTSGI---PQ---RQQTLGEMTLEEFLVRAGVVREE-PQPVESV 195

Query:   207 XXXXXFGIYQTNNN 220
                   G Y   +N
Sbjct:   196 TNFNG-GFYGFGSN 208

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2103665 AREB3 "ABA-responsive element binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
 Identities = 51/103 (49%), Positives = 66/103 (64%)

Query:   320 QPVAAMS-PVSSEAVGTDQQVDGSASHQFGMDHMGGIRKKRIIDGPV-EKVVERRQRRMI 377
             QP A M  PVS       Q +   +S   G+       +KR+  G V EK VERRQ+RMI
Sbjct:   179 QPQAFMPYPVSDM-----QAMVSQSSLMGGLSDTQTPGRKRVASGEVVEKTVERRQKRMI 233

Query:   378 KNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
             KNRESAARSRARKQAYT ELE ++++L+EEN  L++   E+E+
Sbjct:   234 KNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQ-KEVEK 275

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2063275 EEL "AT2G41070" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
 Identities = 41/64 (64%), Positives = 53/64 (82%)

Query:   357 KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALA 416
             +KR+    VEK VERRQ+RMIKNRESAARSRARKQAYT ELE ++++L+EEN  L++ L 
Sbjct:   178 RKRVAGEIVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLRR-LK 236

Query:   417 EMER 420
             E+E+
Sbjct:   237 EVEK 240

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2159986 AT5G42910 "AT5G42910" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
 Identities = 32/81 (39%), Positives = 52/81 (64%)

Query:   366 EKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQ 425
             ++ V+++ RR IKNRESAARSRARKQA T+E+E EL  LK++   L +   E+ +++ + 
Sbjct:   290 KQFVDKKLRRKIKNRESAARSRARKQAQTMEVEVELENLKKDYEELLKQHVELRKRQMEP 349

Query:   426 YFEELKMKPYTKAQKAKEKLR 446
                 L  +P  K ++ K  ++
Sbjct:   350 GMISLHERPERKLRRTKSDIK 370

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2172507 AT5G44080 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
 Identities = 54/118 (45%), Positives = 77/118 (65%)

Query:   338 QVDGS-ASHQFGMD-HMGGIRKKR--IIDGPVEKVVERRQRRMIKNRESAARSRARKQAY 393
             +V+GS  +   G+D + GG R KR  ++  P++K   +RQRRMIKNRESAARSR RKQAY
Sbjct:   196 KVEGSIVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAY 255

Query:   394 TVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKL-RIMRR 450
              VELEA   +L+EEN  L +   E+E K+K++Y ++L        +K K++  R +RR
Sbjct:   256 QVELEALAAKLEEENELLSK---EIEDKRKERY-QKLMEFVIPVVEKPKQQPPRFLRR 309

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2024224 GBF4 "G-box binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query:   353 GGI---RKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 409
             GG+   ++ R++   ++K   +RQ+RMIKNRESAARSR RKQAY VELE    +L+EEN 
Sbjct:   168 GGVTRGKRGRVMMEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEEN- 226

Query:   410 HLKQALAEMERKKKQQY 426
               +Q L E+E   K++Y
Sbjct:   227 --EQLLKEIEESTKERY 241

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SJN0	ABI5_ARATH	No assigned EC number	0.4635	0.8859	0.9140	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_4001389	annotation not avaliable (439 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh1_pg.C_scaffold_3002399	annotation not avaliable (725 aa)					•		•		0.554

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	456
smart00338	65	smart00338, BRLZ, basic region leucin zipper	2e-17
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	3e-12
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-10
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	5e-08
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	1e-04

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 76.1 bits (188), Expect = 2e-17
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424
           E+R+RR  +NRE+A RSR RK+A   ELE ++ QL+ EN  LK+ +  + R+ ++
Sbjct: 4   EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK---QALAEMERKKKQQ 425
           +R+RR  KNRE+A RSR RK+AY  ELE ++ +L+ EN  L+   + L +   K K +
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSE 62

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
           E R RR  +N E+A RSR +K+    ELE  + +L+EENA L+Q + ++E+
Sbjct: 4   EYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLEK 53

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424
            R R+  +NRE+A RSRARK     +LE ++ +L  EN+ L+    E++R KK 
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLE---DEVDRLKKA 52

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 358 KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ---- 413
           K+ +  P+ K ++ RQ ++  +   A R +   QA   E E EL + +E+ + + +    
Sbjct: 24  KKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKK 83

Query: 414 ---ALAEMERKKKQQYFEELKMKPYTKAQKAKEKLR 446
               +AE  + + ++  E +K     + +  KE+  
Sbjct: 84  EAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERAL 119

Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	456
smart00338	65	BRLZ basic region leucin zipper.	99.25
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.23
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.18
KOG3584	348	consensus cAMP response element binding protein an	99.18
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.07
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.02
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	98.87
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	97.92
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.6
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.52
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.49
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	96.96
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	95.96
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	92.44
PHA03155	115	hypothetical protein; Provisional	86.28
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	85.57
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	85.52
PRK10884	206	SH3 domain-containing protein; Provisional	83.95
PF05812	118	Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro:	83.87
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	83.86
PHA03162	135	hypothetical protein; Provisional	83.17
PRK00888	105	ftsB cell division protein FtsB; Reviewed	83.06
KOG1318	411	consensus Helix loop helix transcription factor EB	81.73

>smart00338 BRLZ basic region leucin zipper

Probab=99.25  E-value=3.3e-11  Score=95.16  Aligned_cols=56  Identities=43%  Similarity=0.611  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      ++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|+.++..|..++..
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~   58 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEK   58 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999888664

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.23  E-value=5.8e-11  Score=93.63  Aligned_cols=61  Identities=38%  Similarity=0.593  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE  429 (456)
Q Consensus       369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~  429 (456)
                      ..++.+|+++||+||++||.||++|+++||.+|..|+.+|..|+.++..|..++..+..++
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            5689999999999999999999999999999999999999999999999999988765553

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.18  E-value=4.2e-11  Score=126.93  Aligned_cols=74  Identities=39%  Similarity=0.503  Sum_probs=65.1

Q ss_pred             chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 043882          364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTK  437 (456)
Q Consensus       364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~~~~~~  437 (456)
                      .+|.++.||+.|||||||||..||+|||||++.||.++..|..||+.||++...|+++....+.|+-.-+.+.+
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp  347 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSP  347 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCC
Confidence            35677899999999999999999999999999999999999999999999999999988888888765554444

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.18  E-value=3.6e-11  Score=119.83  Aligned_cols=60  Identities=28%  Similarity=0.428  Sum_probs=54.6

Q ss_pred             chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK  423 (456)
Q Consensus       364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~  423 (456)
                      ..|+...||+-|+.||||+||+||+|||||+.+||.+|..||..|+.|.++|..|++-|-
T Consensus       284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc  343 (348)
T KOG3584|consen  284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC  343 (348)
T ss_pred             cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence            356667899999999999999999999999999999999999999999999998876653

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.07  E-value=7e-10  Score=85.19  Aligned_cols=52  Identities=50%  Similarity=0.753  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      ++++.||. +||++|++||.|||+|+.+|+.++..|+.+|..|+.++..|..+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            56788888 99999999999999999999999999999999999999988753

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.02  E-value=2.4e-10  Score=119.79  Aligned_cols=66  Identities=32%  Similarity=0.531  Sum_probs=58.3

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELK  431 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~  431 (456)
                      .|+++.||.||+|||++||+.||+|||+|++.||.+|.....||.+|++++++|+..-. -+++.|+
T Consensus       245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~-sLl~qL~  310 (472)
T KOG0709|consen  245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNR-SLLAQLK  310 (472)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccH-HHHHHHH
Confidence            37778999999999999999999999999999999999999999999999999987643 3444444

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=98.87  E-value=1.1e-08  Score=100.02  Aligned_cols=71  Identities=31%  Similarity=0.348  Sum_probs=58.9

Q ss_pred             CCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          357 KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE  428 (456)
Q Consensus       357 rk~~~~~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e  428 (456)
                      |||..-+++ ..+||-+||++|||+.|+-+|.|||++++++|.++..|.+||..|+.+.+.|.+.-+.++.+
T Consensus        56 rKr~RL~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~  126 (292)
T KOG4005|consen   56 RKRRRLDHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAK  126 (292)
T ss_pred             HHHHhhccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555444555 35789999999999999999999999999999999999999999988888887766655443

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=97.92  E-value=6.9e-07  Score=75.55  Aligned_cols=57  Identities=35%  Similarity=0.477  Sum_probs=45.7

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      .+....|..||.+|||.+|++||.||.+++++||.++..|+.+...|..++..+..+
T Consensus        24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e   80 (92)
T PF03131_consen   24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE   80 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566999999999999999999999999999999988776666666555555443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.60  E-value=0.00034  Score=70.79  Aligned_cols=61  Identities=31%  Similarity=0.440  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 043882          370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK---QQYFEEL  430 (456)
Q Consensus       370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~---q~~~e~~  430 (456)
                      ++.+|..+.|..+|.|=|.||++..+.|+.+...|+.+|.+||.++.+|+++..   +.++|..
T Consensus       226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~  289 (294)
T KOG4571|consen  226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY  289 (294)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444456666799999999999999999999999999999999999998764   5555543

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.52  E-value=0.00033  Score=69.99  Aligned_cols=67  Identities=22%  Similarity=0.389  Sum_probs=58.5

Q ss_pred             CCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          358 KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       358 k~~~~~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      ++....+.|+++.+-..|..||=++|+|||.+.|...++...+|..|+.||+.|+.++++|+.+...
T Consensus       181 ~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~  247 (269)
T KOG3119|consen  181 KSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT  247 (269)
T ss_pred             hccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3544567777778888888899999999999999999999999999999999999999999887554

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.49  E-value=0.00039  Score=69.49  Aligned_cols=61  Identities=30%  Similarity=0.469  Sum_probs=48.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 043882          371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER---KKKQQYFEELK  431 (456)
Q Consensus       371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~---~~~q~~~e~~~  431 (456)
                      |-+|..++|||.|.+||+||-++|..||++|..|+-+|..|-..+..|.+   +.++.++|-+.
T Consensus       206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~  269 (279)
T KOG0837|consen  206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH  269 (279)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455689999999999999999999999999999999888777666554   34555666554

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=96.96  E-value=0.0048  Score=56.21  Aligned_cols=62  Identities=34%  Similarity=0.420  Sum_probs=47.8

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEL-------NQLKEENAHLKQALAEMERKKKQQY  426 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v-------~~L~~eN~~L~~ql~~l~~~~~q~~  426 (456)
                      .|..-.|.+||-+|||=-|+-||.|+-..-++||.+.       ++|++||..++.++..++.+|+.+.
T Consensus        47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445688899999999999999999999999988764       4566666666666666666666543

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=95.96  E-value=0.008  Score=66.20  Aligned_cols=50  Identities=32%  Similarity=0.443  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER  420 (456)
Q Consensus       371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~  420 (456)
                      |-.||.=|||.+|++||+||-.-|..||.+|..|+.|-+.|.++-.++..
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~  539 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDS  539 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999888887777666554443

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=92.44  E-value=0.0059  Score=64.07  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 043882          367 KVVERRQRRMIKNRESAAR---SRARKQAYTVELEAELNQLK-EENAHLKQALAEMERKKKQQY  426 (456)
Q Consensus       367 k~~eKRqrR~ikNReSA~R---SR~RKk~y~eeLE~~v~~L~-~eN~~L~~ql~~l~~~~~q~~  426 (456)
                      +.++|+..|+++|+..|.+   ||.||+.++.+|+.+|+.|+ .+|..|..++..|..+++..+
T Consensus       150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~  213 (395)
T KOG1414|consen  150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE  213 (395)
T ss_pred             cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence            3468999999999999999   99999999999999999999 999999999999999866533

>PHA03155 hypothetical protein; Provisional

Probab=86.28  E-value=1.1  Score=40.32  Aligned_cols=39  Identities=36%  Similarity=0.428  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Q 043882          393 YTVELEAELNQLKEENAHLKQALAE--------MERKKKQQYFEELK  431 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~--------l~~~~~q~~~e~~~  431 (456)
                      -+|+|++++.+|+.||..|++++..        |....++.++-...
T Consensus         9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v   55 (115)
T PHA03155          9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLV   55 (115)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHH
Confidence            4789999999999999999999966        77777777666544

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=85.57  E-value=6.4  Score=38.00  Aligned_cols=11  Identities=9%  Similarity=0.096  Sum_probs=9.0

Q ss_pred             cccccccCCCC
Q 043882          446 RIMRRNLSCPL  456 (456)
Q Consensus       446 ~~LRRT~S~pw  456 (456)
                      ....-+.++||
T Consensus       180 ~~F~~~~aaPW  190 (190)
T PF05266_consen  180 LEFQSVAAAPW  190 (190)
T ss_pred             HHHHHHhcCCC
Confidence            45688999999

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=85.52  E-value=0.14  Score=53.93  Aligned_cols=56  Identities=32%  Similarity=0.510  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 043882          369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK-QALAEMERKKKQ  424 (456)
Q Consensus       369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~-~ql~~l~~~~~q  424 (456)
                      ++++.|=+++||.+|-+||.|||..+..|+.+...+..+|..|. .+++.|..+.++
T Consensus       283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~  339 (395)
T KOG1414|consen  283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQ  339 (395)
T ss_pred             hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhh
Confidence            45668889999999999999999999999999999999999998 555555555444

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.95  E-value=10  Score=37.08  Aligned_cols=42  Identities=29%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          383 AARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       383 A~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      ........++.+..++..+..|+++|.+|+++++.++.+...
T Consensus       116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884        116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444445556666777888888888888887777654

>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins

Probab=83.87  E-value=1.7  Score=39.34  Aligned_cols=30  Identities=40%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          390 KQAYTVELEAELNQLKEENAHLKQALAEME  419 (456)
Q Consensus       390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~  419 (456)
                      |..-+|+|++++.+|+.||..|++++..--
T Consensus         1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~   30 (118)
T PF05812_consen    1 KDMTMEELAAELQKLQMENKALKKKLRQSV   30 (118)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            445689999999999999999999987533

; PDB: 2OA5_B 2H3R_D.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=83.86  E-value=6.2  Score=37.52  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQ  425 (456)
Q Consensus       386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~  425 (456)
                      -..+.+..+.+|..+++.|+.||..|.+++..+++.|+.+
T Consensus       105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L  144 (161)
T TIGR02894       105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL  144 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567788899999999999999999999999998864

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PHA03162 hypothetical protein; Provisional

Probab=83.17  E-value=0.81  Score=42.12  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHh
Q 043882          389 RKQAYTVELEAELNQLKEENAHLKQALAE------------MERKKKQQYFEELK  431 (456)
Q Consensus       389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~------------l~~~~~q~~~e~~~  431 (456)
                      +|+.-+|+|++++.+|+.||..|++++..            |....++.++-...
T Consensus        10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v   64 (135)
T PHA03162         10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAAT   64 (135)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHH
Confidence            35667899999999999999999999932            55666666655443

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=83.06  E-value=4  Score=35.75  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          388 ARKQAYTVELEAELNQLKEENAHLKQALAEMER  420 (456)
Q Consensus       388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~  420 (456)
                      .+.++.+++++.++..|+.+|..|+++++.|+.
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            446667788999999999999999999998876

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=81.73  E-value=5  Score=43.14  Aligned_cols=58  Identities=28%  Similarity=0.378  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHhhHH-----------------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          367 KVVERRQRRMIKNRES-----------------------AA----RSRARKQAYTVELEAELNQLKEENAHLKQALAEME  419 (456)
Q Consensus       367 k~~eKRqrR~ikNReS-----------------------A~----RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~  419 (456)
                      ..+|||+|-.|.+|.-                       |.    |+=+++.+.+.|++.+-+.|+..|.+|+.++++|+
T Consensus       238 NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk  317 (411)
T KOG1318|consen  238 NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELK  317 (411)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence            3478899988888852                       22    12233445566777777888999999999999998


Q ss_pred             HHHHH
Q 043882          420 RKKKQ  424 (456)
Q Consensus       420 ~~~~q  424 (456)
                      .++..
T Consensus       318 ~~~~~  322 (411)
T KOG1318|consen  318 SEAGR  322 (411)
T ss_pred             HHHHH
Confidence            87654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	456
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	2e-17
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	1e-13
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	2e-12
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	3e-12
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	1e-11
2wt7_B	90	Transcription factor MAFB; transcription, transcri	5e-11
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	7e-11
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-09
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	3e-08
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	5e-07
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	4e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQ 425
           +R+ R++KNRE+A  SR +K+ Y   LE  +  L+ +N  L + L  ++     +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424
           +R++ + +NR +A+RSR +++ +   LE +   L   N  L+  +  +  +  Q
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 13/50 (26%), Positives = 29/50 (58%)

Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
           ++ ++M +N+ +A R R +K+A    L  E  +L+++N  LK+    + +
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 18/55 (32%), Positives = 38/55 (69%)

Query: 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424
           E+R+ R  +N+ +AA+ R R++  T  L+AE +QL++E + L+  +A + ++K++
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424
           + +R+ ++NR +A++SR RK      LE ++  LK +N+ L      +  +  Q
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 58.1 bits (140), Expect = 5e-11
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 366 EKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEM--ERKKK 423
           E +  +++RR +KNR  A   R ++      LE E  QL ++   LKQ ++ +  ER   
Sbjct: 22  EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81

Query: 424 QQYFEELK 431
           +   E+L 
Sbjct: 82  KVKSEKLA 89

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 58.1 bits (140), Expect = 7e-11
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEM--ERK 421
             E +  +++RR +KNR  AA  R ++     ELE +  +L++E   L    A M  E  
Sbjct: 30  KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELD 89

Query: 422 KKQQYFEELK 431
             +  +E L+
Sbjct: 90  ALRSKYEALQ 99

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 360 IIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEME 419
           I+    +    +R R    N E+A RSRARK     +LE ++ +L  +N HL+    E+ 
Sbjct: 2   IVPESSDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLE---NEVA 54

Query: 420 RKKKQ 424
           R KK 
Sbjct: 55  RLKKL 59

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 355 IRKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQA 414
           ++ K      V+K  +  + R  +N  +  +SR + +   +E + ++ +L  EN  L++ 
Sbjct: 1   VKSKA--KKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

Query: 415 LAEMER 420
           + ++ R
Sbjct: 59  VEQLSR 64

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 356 RKKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQAL 415
           + K+ +D   ++   RR+R    N  +  +SR + +   +E + ++ +L  EN  L++ +
Sbjct: 4   KAKKTVDKHSDEYKIRRER----NNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV 59

Query: 416 AEMER 420
            ++ R
Sbjct: 60  EQLSR 64

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429
           E   +R  +NR +    R RK+ +   LE ++  LKE ++       ++ R+K +Q  EE
Sbjct: 7   EPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQL-RQKVRQLEEE 65

Query: 430 LKM 432
           L++
Sbjct: 66  LRI 68

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 32/115 (27%), Gaps = 3/115 (2%)

Query: 198 QNTTPVAQPP---PQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPA 254
           QN TP+ QP    P Q       +   +  P  G    +G       A       +    
Sbjct: 18  QNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

Query: 255 YQQMPPARGVVGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRV 309
                     V     +AYM P      G     QQ P   P+    +   G  +
Sbjct: 78  TSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 16/148 (10%), Positives = 28/148 (18%)

Query: 205 QPPPQQQFGIYQTNNNPVMSPNFGTGHVLGLTGVSNGASNNGSVPVPAPAYQQMPPARGV 264
           +  PQ Q    Q          F         G+S G              QQ       
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

Query: 265 VGSDQSSAYMGPTNEKGSGGYSATQQPPQPPPSPPPLAVCYGGRVGTGGGYASGGQPVAA 324
               Q       +             P        P+ +    +       A      +A
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 325 MSPVSSEAVGTDQQVDGSASHQFGMDHM 352
               +   +     +D        +  +
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDL 154

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 8/65 (12%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 366 EKVVERRQRRMIKNRESAARSRARKQAYTVELEAEL-NQLKEENAHLKQALAEMERKKKQ 424
           E + + R+ +  + +E  A S+  +Q +  + + +L    + ++  +++      R   +
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN-RIADK 143

Query: 425 QYFEE 429
            ++++
Sbjct: 144 AFYQQ 148

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429
               +R +K  +  ARS  R +   + LE ++ QL+ +     +    +  K      E 
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL--EI 956

Query: 430 LKMKPYTKAQKAKEKLRIMRR 450
                  K +   E+LR+   
Sbjct: 957 TYSTETEKLRSDVERLRMSEE 977

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	456
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.53
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.34
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.24
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.17
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.13
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.88
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.58
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.56
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.38
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.29
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.0
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	95.93
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.85
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	92.09
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	89.14
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	88.92
3m48_A	33	General control protein GCN4; leucine zipper, synt	88.2
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	85.31
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	85.06
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	84.97
1fmh_A	33	General control protein GCN4; coiled coil, leucine	84.24
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	82.63
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	82.21
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	82.0
2bni_A	34	General control protein GCN4; four helix bundle, a	81.9
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	81.12
1uo4_A	34	General control protein GCN4; four helix bundle, c	80.75
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	80.51
2hy6_A	34	General control protein GCN4; protein design, para	80.13

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.53  E-value=6.7e-15  Score=113.15  Aligned_cols=53  Identities=32%  Similarity=0.511  Sum_probs=49.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK  423 (456)
Q Consensus       371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~  423 (456)
                      ||++||++||+||++||.|||+|+++||.+|..|+.||..|+.++..|.+.+.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~   53 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS   53 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999999999999999876643

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.34  E-value=3.3e-12  Score=100.23  Aligned_cols=55  Identities=33%  Similarity=0.537  Sum_probs=52.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      |||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|+.++..|..++.+
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~   55 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK   55 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999888654

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.24  E-value=2.2e-11  Score=94.73  Aligned_cols=54  Identities=24%  Similarity=0.446  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      ||++|+++||++|++||.||++|+++||.+|..|+.+|..|+.++..|..+..+
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~   54 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ   54 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999888654

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.17  E-value=3.8e-11  Score=94.58  Aligned_cols=52  Identities=31%  Similarity=0.410  Sum_probs=44.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK  423 (456)
Q Consensus       372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~  423 (456)
                      ..++..+||+||+|||.||++|+.+||.+|..|+.+|..|+.+++.|.+...
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455999999999999999999999999999999999999998876543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.13  E-value=1.1e-10  Score=91.13  Aligned_cols=53  Identities=26%  Similarity=0.430  Sum_probs=49.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK  423 (456)
Q Consensus       371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~  423 (456)
                      |++||.++||++|++||.||++|+.+||.+|..|+.+|..|+.++..|..+..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~   53 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA   53 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999988754

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.88  E-value=3.9e-09  Score=82.93  Aligned_cols=54  Identities=24%  Similarity=0.410  Sum_probs=45.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      |+++++.+||.+|+|||.||++++.+|+.++..|+.+|..|+.+++.|+.+...
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~   55 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQY   55 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999988653

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.58  E-value=1.8e-07  Score=76.70  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=52.0

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      +|+.+++-..|..+|.++|+|||.++++...+++.++..|+.||..|+.++..|..+...
T Consensus         9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~   68 (78)
T 1gu4_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST   68 (78)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555666668899999999999999999999999999999999999999999887543

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.56  E-value=2.1e-07  Score=77.69  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=53.4

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ  424 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q  424 (456)
                      +|+.+++-..|..+|.++|+|||.++++...+++.++..|+.||..|+.+++.|..+...
T Consensus         9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~   68 (87)
T 1hjb_A            9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST   68 (87)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566677778999999999999999999999999999999999999999999988663

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.38  E-value=1.5e-08  Score=87.57  Aligned_cols=60  Identities=32%  Similarity=0.408  Sum_probs=45.0

Q ss_pred             chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 043882          364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL-------KEENAHLKQALAEMERKKK  423 (456)
Q Consensus       364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L-------~~eN~~L~~ql~~l~~~~~  423 (456)
                      ..+....|.+||..|||++|++||.||.+.+++||.++..|       ..||..|+.++..+..+|+
T Consensus        30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e   96 (107)
T 3a5t_A           30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYE   96 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC-
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566789999999999999999999999999999776654       5555555555544444443

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.29  E-value=2.8e-06  Score=68.33  Aligned_cols=57  Identities=25%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE  428 (456)
Q Consensus       372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e  428 (456)
                      ..||+..||.+++..|.||++|+.+||.+|..|+.++..|..+...|......+..|
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E   65 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE   65 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999999999999999999999999999888777777766666655544433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.00  E-value=3.3e-05  Score=64.88  Aligned_cols=59  Identities=29%  Similarity=0.397  Sum_probs=50.4

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK  423 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~  423 (456)
                      .+....|.+||-.|||..|+.||.||....++||.++..|..+-+.|+.++..+..+..
T Consensus        21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d   79 (90)
T 2wt7_B           21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD   79 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566889999999999999999999999999999998888888888887777765543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=95.93  E-value=0.0094  Score=43.54  Aligned_cols=31  Identities=29%  Similarity=0.568  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          391 QAYTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      |+|+.+||.++..|+..|.+|..++..|+.+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~E   32 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNE   32 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999877

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.85  E-value=0.0042  Score=52.16  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEA  399 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~  399 (456)
                      ......|..||..|||.+|++||+||.+.+++|+.
T Consensus        56 ~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           56 YQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            34456789999999999999999999999888764

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=92.09  E-value=0.7  Score=35.70  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          375 RMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ  413 (456)
Q Consensus       375 R~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~  413 (456)
                      ..-|||.++++||+|=+..++...+-...-.+||+.|+-
T Consensus         5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~   43 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRL   43 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            346899999999999998887777666667789998864

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=89.14  E-value=0.64  Score=32.90  Aligned_cols=30  Identities=30%  Similarity=0.467  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERKK  422 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~  422 (456)
                      ++..||.+|+.|..+|.+|..+++.|+...
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll   31 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN   31 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            467899999999999999999998886653

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=88.92  E-value=0.51  Score=33.05  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      ++..||.+|+.|-.+|.+|..++..|+..
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l   30 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            57889999999999999999999887653

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=88.20  E-value=0.52  Score=32.84  Aligned_cols=28  Identities=25%  Similarity=0.437  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          394 TVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      +..||.+|+.|-.+|.+|..++..|..-
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L   29 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKKL   29 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5679999999999999999999887653

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=85.31  E-value=1  Score=31.89  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERKK  422 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~  422 (456)
                      ++..||.+|+.|..+|.+|..++..|+...
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll   31 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKEN   31 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            457899999999999999999988887654

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=85.06  E-value=0.092  Score=44.09  Aligned_cols=28  Identities=32%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043882          365 VEKVVERRQRRMIKNRESAARSRARKQA  392 (456)
Q Consensus       365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~  392 (456)
                      .....-|.+||.-|||++|++||+||.+
T Consensus        60 ~Ql~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           60 SQLALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3445678999999999999999999864

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=84.97  E-value=1.1  Score=31.25  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      ++..||.+|+.|-.+|.+|..+++.|+..
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l   30 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXKL   30 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            57789999999999999999998887654

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=84.24  E-value=1.6  Score=29.67  Aligned_cols=29  Identities=34%  Similarity=0.488  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          394 TVELEAELNQLKEENAHLKQALAEMERKK  422 (456)
Q Consensus       394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~  422 (456)
                      +..||++|.+-+.||-.|.+++..|+.+|
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            45789999999999999999999998876

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=82.63  E-value=3  Score=31.72  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882          394 TVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKM  432 (456)
Q Consensus       394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~  432 (456)
                      .+.|-.+|+.|+.||..|+++++.-.........|...+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m   43 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM   43 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence            467889999999999999999998877776666555443

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=82.21  E-value=2.3  Score=29.57  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          394 TVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      +..||.+|+.|-.+|.+|..+++.|+..
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l   29 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKXL   29 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            5689999999999999999998887654

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=82.00  E-value=6.7  Score=33.50  Aligned_cols=26  Identities=38%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          391 QAYTVELEAELNQLKEENAHLKQALA  416 (456)
Q Consensus       391 k~y~eeLE~~v~~L~~eN~~L~~ql~  416 (456)
                      -..+.+|+.+|..|+.||..|+++.+
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~   89 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENE   89 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999988876544

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=81.90  E-value=1.7  Score=30.49  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      ++..||.+|+.|-.+|.+|..+++.|+..
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l   30 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKKL   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            56789999999999999999998887653

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=81.12  E-value=15  Score=30.14  Aligned_cols=43  Identities=12%  Similarity=0.185  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE  428 (456)
Q Consensus       386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e  428 (456)
                      +=..=+..++.|+.+|..|+-.++++..+++.+.++.++.+.+
T Consensus        21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d   63 (83)
T 2xdj_A           21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ   63 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355667788899999999999999999999999988888765

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=80.75  E-value=1.9  Score=30.16  Aligned_cols=29  Identities=14%  Similarity=0.252  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      ++..||.+|+.|-.+|.+|..++..|+.-
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L   30 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKKL   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45789999999999999999988887653

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=80.51  E-value=9.7  Score=31.56  Aligned_cols=58  Identities=17%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             CchhhHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          363 GPVEKVVERRQRRMIKNRESAARSRARKQ--AYTVELEAELNQLKEENAHLKQALAEMER  420 (456)
Q Consensus       363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk--~y~eeLE~~v~~L~~eN~~L~~ql~~l~~  420 (456)
                      +..-+.+.-+.-+-++.++.++....||+  +.++.-..++..|+++...++++|.+|..
T Consensus        20 gaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           20 GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34444444455555555666665556665  34444445566666666666666666654

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=80.13  E-value=2.1  Score=29.97  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882          393 YTVELEAELNQLKEENAHLKQALAEMERK  421 (456)
Q Consensus       393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~  421 (456)
                      ++..||.+|+.|-.+|.+|..+++.|.+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l   30 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKA   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45789999999999999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	456
d2jn6a1	89	a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762	0.003

>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Length = 89

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Cgl2762-like
domain: Uncharacterized protein Cgl2762
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 9/49 (18%), Positives = 17/49 (34%)

Query: 368 VVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALA 416
           +     +  I    S    +    +  V    ++ QLK+ENA  +    
Sbjct: 35  INRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTR 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	456
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	91.93

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.93  E-value=0.033  Score=43.25  Aligned_cols=30  Identities=27%  Similarity=0.306  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 043882          367 KVVERRQRRMIKNRESAARSRARKQAYTVE  396 (456)
Q Consensus       367 k~~eKRqrR~ikNReSA~RSR~RKk~y~ee  396 (456)
                      ...-+-.||.=|||.+|++||+||-...++
T Consensus        44 l~lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          44 RQLIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            345688999999999999999999876554