Citrus Sinensis ID: 043903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MKLEKLKGNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEccccccccccHHHHHHHHHHHHHcccccccEEEEcccEEEEEEEEEcccEEEEEccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccEEEEEccccEEEccEEEEccEEEEEccccEEEEccccc
Coil and Loop (DISEMBL)
mkleklkgnfsrpsratlVPIVTLIKILSLQitkkpvlslrrvgfsgaegalfnpatcvaglpgdqylpkrkVVMSIkdfgvgdgttsTTEVFRKAVRYVQAFgdkggtqlnvpeglwltgsfiltsnfTLFLQKGAVILGSQELK
Flexible Loop (DISEMBL)
mkleklkgnfsrpsratlvPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDfgvgdgttstteVFRKAVRYVQAFgdkggtqlNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK
Low Complexity Region (SEG)
MKLEKLKGNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK
Disordered region (IsUnstruct)
***************ATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVIL******
Disordered Region (DISOPRED)
*************SRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQE**
Disordered Region (DISEMBL)
MKLEKLKGNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK
Disordered Region (DISPRO)
*KLEKLKGNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLEKLKGNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
A7PZL3	491	Probable polygalacturonas	no	no	0.479	0.142	0.563	2e-15
P15922	602	Exo-poly-alpha-D-galactur	N/A	no	0.438	0.106	0.385	0.0001

>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 76  SIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ 134
           S+ DFG VGDG T  T+ F+ AV  +  +G +GG QL VP G WLTGSF LTS+FTLFL 
Sbjct: 64  SLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLH 123

Query: 135 KGAVILGSQEL 145
           + AV+L SQ++
Sbjct: 124 RDAVLLASQDI 134

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

>sp|P15922|PEHX_ERWCH Exo-poly-alpha-D-galacturonosidase OS=Erwinia chrysanthemi GN=pehX PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)

Query: 74  VMSIKDFGV-GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLF 132
           V++I  +G  GDGTT  T   +KA+          G +++VP G++ TG+  L S+ TL 
Sbjct: 151 VINITQYGAKGDGTTLNTSAIQKAIDACPT-----GCRIDVPAGVFKTGALWLKSDMTLN 205

Query: 133 LQKGAVILGS 142
           L +GA +LGS
Sbjct: 206 LLQGATLLGS 215

Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers.

Erwinia chrysanthemi (taxid: 556)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
225431447	488	PREDICTED: probable polygalacturonase [V	0.931	0.278	0.542	1e-29
147776708	479	hypothetical protein VITISV_043959 [Viti	0.931	0.283	0.542	2e-29
296088539	528	unnamed protein product [Vitis vinifera]	0.931	0.257	0.542	2e-29
357464681	775	Germin-like protein [Medicago truncatula	0.931	0.175	0.478	3e-28
255571381	480	polygalacturonase, putative [Ricinus com	0.924	0.281	0.52	2e-27
297802658	475	glycoside hydrolase family 28 protein [A	0.876	0.269	0.522	4e-27
356516364	477	PREDICTED: probable polygalacturonase-li	0.904	0.276	0.517	6e-27
22329119	475	glycoside hydrolase family 28 protein /	0.876	0.269	0.522	9e-27
4490311	462	putative protein [Arabidopsis thaliana]	0.890	0.281	0.507	2e-26
224096000	445	predicted protein [Populus trichocarpa]	0.705	0.231	0.592	2e-26

>gi|225431447|ref|XP_002274138.1| PREDICTED: probable polygalacturonase [Vitis vinifera]

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/140 (54%), Positives = 97/140 (69%), Gaps = 4/140 (2%)

Query: 8   GNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQY 67
           G F+RPS A L+ +  ++ +   QI  K V   R V   G E  +   A    GL  +  
Sbjct: 13  GGFTRPSWAFLLLVFIVLVVSCFQIGTKTVFP-RWVVLGGGETGISEEAPSCFGLFRE-- 69

Query: 68  LPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
           +P RKVVMSI+DFG VGDG TS TE FR+A+RY+Q+FG+ GG+QLNVP G W+TGSF LT
Sbjct: 70  VPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVPRGRWVTGSFNLT 129

Query: 127 SNFTLFLQKGAVILGSQELK 146
           SNFTLFL++GAVILGSQ+L+
Sbjct: 130 SNFTLFLEEGAVILGSQDLE 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776708|emb|CAN76963.1| hypothetical protein VITISV_043959 [Vitis vinifera]

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/140 (54%), Positives = 97/140 (69%), Gaps = 4/140 (2%)

Query: 8   GNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQY 67
           G F+RPS A L+ +  ++ +   QI  K V   R V   G E  +   A    GL  +  
Sbjct: 2   GGFTRPSWAFLLLVFIVLVVSCFQIGTKTVFP-RWVVLGGGETGISEEAPSCFGLFRE-- 58

Query: 68  LPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
           +P RKVVMSI+DFG VGDG TS TE FR+A+RY+Q+FG+ GG+QLNVP G W+TGSF LT
Sbjct: 59  VPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVPRGRWVTGSFNLT 118

Query: 127 SNFTLFLQKGAVILGSQELK 146
           SNFTLFL++GAVILGSQ+L+
Sbjct: 119 SNFTLFLEEGAVILGSQDLE 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088539|emb|CBI37530.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/140 (54%), Positives = 97/140 (69%), Gaps = 4/140 (2%)

Query: 8   GNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQY 67
           G F+RPS A L+ +  ++ +   QI  K V   R V   G E  +   A    GL  +  
Sbjct: 13  GGFTRPSWAFLLLVFIVLVVSCFQIGTKTVFP-RWVVLGGGETGISEEAPSCFGLFRE-- 69

Query: 68  LPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
           +P RKVVMSI+DFG VGDG TS TE FR+A+RY+Q+FG+ GG+QLNVP G W+TGSF LT
Sbjct: 70  VPPRKVVMSIRDFGGVGDGVTSNTETFRRAIRYMQSFGNIGGSQLNVPRGRWVTGSFNLT 129

Query: 127 SNFTLFLQKGAVILGSQELK 146
           SNFTLFL++GAVILGSQ+L+
Sbjct: 130 SNFTLFLEEGAVILGSQDLE 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464681|ref|XP_003602622.1| Germin-like protein [Medicago truncatula] gi|355491670|gb|AES72873.1| Germin-like protein [Medicago truncatula]

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/140 (47%), Positives = 96/140 (68%), Gaps = 4/140 (2%)

Query: 8   GNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQY 67
           G++++PS + L    T + ILSLQ + + +  L  +     + +L +P TC +G   +  
Sbjct: 12  GSYTKPSCSILFLFFTFLTILSLQFSTRSLFPLSILLSQQPQPSLVDPTTC-SGFFNN-- 68

Query: 68  LPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
           +P RK++ SI DFG VGDG TS T+ F++A+RY+Q F  KGG+QLN+P G WLTGSF LT
Sbjct: 69  VPPRKIIKSIVDFGGVGDGKTSNTQSFQRAIRYMQRFRGKGGSQLNIPNGTWLTGSFNLT 128

Query: 127 SNFTLFLQKGAVILGSQELK 146
           S+FTLFL  GAV+LGSQ++K
Sbjct: 129 SDFTLFLHHGAVVLGSQDIK 148

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571381|ref|XP_002526639.1| polygalacturonase, putative [Ricinus communis] gi|223534031|gb|EEF35751.1| polygalacturonase, putative [Ricinus communis]

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/150 (52%), Positives = 101/150 (67%), Gaps = 15/150 (10%)

Query: 6   LKGNFSRPSRATLVPIVTLIKILSLQITKK---PVLSLRRV-----GFSGAEGALFNPAT 57
           L G  +R S + L+ ++T++ +LS+QIT +   P+  + R      GFSG      +  +
Sbjct: 7   LMGKLTRLSWSPLILLITVLVLLSIQITTRDFYPICLMSRSSSQPPGFSG------DKES 60

Query: 58  CVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG 116
           C     G+  LP+R+VV SI DFG VGDG TS TE FRKAVRY+Q F +KGG+QL VP G
Sbjct: 61  CAVFFLGELLLPRREVVRSIVDFGGVGDGKTSNTETFRKAVRYMQRFAEKGGSQLIVPRG 120

Query: 117 LWLTGSFILTSNFTLFLQKGAVILGSQELK 146
            WLTGSF LTSNFTLFL++GAVILGSQ+ K
Sbjct: 121 RWLTGSFNLTSNFTLFLEEGAVILGSQDPK 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802658|ref|XP_002869213.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297315049|gb|EFH45472.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  125 bits (315), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/136 (52%), Positives = 89/136 (65%), Gaps = 8/136 (5%)

Query: 11  SRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPK 70
           +RPS A L+ + T + ILSLQI+    + +             +P TC      D + P 
Sbjct: 15  TRPSCAFLLLVFTALAILSLQISSNSFIPIWI-----PTSQYHDPVTCSGFFNHDPF-PN 68

Query: 71  RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNF 129
           RKV MSI DFG VGDG TS TE FR+AVR+++ F  +GG QLNVP G WL+GSF LTSNF
Sbjct: 69  RKV-MSITDFGGVGDGKTSNTEAFRRAVRHLEGFAAEGGAQLNVPMGTWLSGSFNLTSNF 127

Query: 130 TLFLQKGAVILGSQEL 145
           TLFLQ+GAVILGS++L
Sbjct: 128 TLFLQRGAVILGSKDL 143

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516364|ref|XP_003526865.1| PREDICTED: probable polygalacturonase-like [Glycine max]

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 73/141 (51%), Positives = 92/141 (65%), Gaps = 9/141 (6%)

Query: 8   GNFSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC-VAGLPGDQ 66
           G  +RPS A +  + TL+  L+L +  +PV  L     SG +   +   T   AG   D 
Sbjct: 14  GTCTRPSWALIFLLFTLVTFLTLHLPARPVWFL-----SGLQPGPYPTTTPTCAGFFRD- 67

Query: 67  YLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL 125
            +P RKVV+SI+DFG VGDG TS TE FR+A+RY+Q F ++GG QLN+P G WLTGSF L
Sbjct: 68  -VPPRKVVLSIEDFGGVGDGKTSNTESFRRAIRYMQRFQNRGGAQLNIPTGTWLTGSFNL 126

Query: 126 TSNFTLFLQKGAVILGSQELK 146
           TSNFTLFL  GAVIL SQ+ K
Sbjct: 127 TSNFTLFLHHGAVILASQDPK 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329119|ref|NP_195070.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|27754320|gb|AAO22613.1| putative polygalacturonase [Arabidopsis thaliana] gi|28393881|gb|AAO42348.1| putative polygalacturonase [Arabidopsis thaliana] gi|332660825|gb|AEE86225.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/136 (52%), Positives = 93/136 (68%), Gaps = 8/136 (5%)

Query: 11  SRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPK 70
           +RPS A L+ + T++ ILSLQI+    L L  +  S  +    +P TC      D + P 
Sbjct: 15  TRPSWAFLLLVFTVLAILSLQISSNSFLPLW-IPTSQYD----DPVTCSGFFNHDPF-PN 68

Query: 71  RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNF 129
           R +VMSI DFG VGDG TS T  FR+AVR+++ F  +GG QLNVPEG WL+GSF LTSNF
Sbjct: 69  R-IVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSNF 127

Query: 130 TLFLQKGAVILGSQEL 145
           TLFL++GA+ILGS++L
Sbjct: 128 TLFLERGALILGSKDL 143

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4490311|emb|CAB38802.1| putative protein [Arabidopsis thaliana] gi|7270292|emb|CAB80061.1| putative protein [Arabidopsis thaliana]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 90/138 (65%), Gaps = 8/138 (5%)

Query: 10  FSRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLP 69
            +RPS A L+ + T++ ILSLQI+    L L             +P TC      D + P
Sbjct: 14  ITRPSWAFLLLVFTVLAILSLQISSNSFLPLWI-----PTSQYDDPVTCSGFFNHDPF-P 67

Query: 70  KRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSN 128
            R +VMSI DFG VGDG TS T  FR+AVR+++ F  +GG QLNVPEG WL+GSF LTSN
Sbjct: 68  NR-IVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSN 126

Query: 129 FTLFLQKGAVILGSQELK 146
           FTLFL++GA+ILGS++L 
Sbjct: 127 FTLFLERGALILGSKDLD 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096000|ref|XP_002310517.1| predicted protein [Populus trichocarpa] gi|222853420|gb|EEE90967.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 79/108 (73%), Gaps = 5/108 (4%)

Query: 42  RVGFSGAE--GALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVR 98
           ++ FS     G   +  T   G  G+  LP+RK VMSI++FG VGDG TS TE FRKA+R
Sbjct: 2   KIAFSSTSKTGVSADTRTSCVGFFGE--LPERKAVMSIREFGGVGDGKTSNTETFRKAIR 59

Query: 99  YVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK 146
           Y+Q FG+ GG QLNVP+G W+TGSF LTSNFTLFL++GAVILGSQ+ K
Sbjct: 60  YLQRFGESGGAQLNVPKGRWVTGSFNLTSNFTLFLEEGAVILGSQDPK 107

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2119156	475	AT4G33440 [Arabidopsis thalian	0.876	0.269	0.522	5e-27
TAIR|locus:2083383	446	AT3G06770 [Arabidopsis thalian	0.554	0.181	0.573	4.4e-17
TAIR|locus:504954979	449	AT5G49215 [Arabidopsis thalian	0.479	0.155	0.619	2e-16
TAIR|locus:2086740	455	AT3G16850 [Arabidopsis thalian	0.527	0.169	0.576	4.5e-16
TAIR|locus:2101313	469	AT3G48950 [Arabidopsis thalian	0.506	0.157	0.56	3.6e-15
TAIR|locus:2117964	495	AT4G23500 [Arabidopsis thalian	0.472	0.139	0.6	6.7e-15
TAIR|locus:2098038	471	AT3G62110 [Arabidopsis thalian	0.465	0.144	0.579	9.9e-15
TAIR|locus:2061396	477	AT2G23900 [Arabidopsis thalian	0.506	0.155	0.546	1.7e-14
TAIR|locus:2082787	476	AT3G61490 [Arabidopsis thalian	0.479	0.147	0.535	2.8e-14
TAIR|locus:2078531	484	AT3G42950 [Arabidopsis thalian	0.534	0.161	0.537	3.7e-14

TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 5.0e-27, P = 5.0e-27
 Identities = 71/136 (52%), Positives = 93/136 (68%)

Query:    11 SRPSRATLVPIVTLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPK 70
             +RPS A L+ + T++ ILSLQI+    L L  +  S  +    +P TC      D + P 
Sbjct:    15 TRPSWAFLLLVFTVLAILSLQISSNSFLPLW-IPTSQYD----DPVTCSGFFNHDPF-PN 68

Query:    71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNF 129
             R +VMSI DFG VGDG TS T  FR+AVR+++ F  +GG QLNVPEG WL+GSF LTSNF
Sbjct:    69 R-IVMSITDFGGVGDGKTSNTAAFRRAVRHLEGFAAEGGAQLNVPEGTWLSGSFNLTSNF 127

Query:   130 TLFLQKGAVILGSQEL 145
             TLFL++GA+ILGS++L
Sbjct:   128 TLFLERGALILGSKDL 143

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2083383 AT3G06770 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 47/82 (57%), Positives = 56/82 (68%)

Query:    64 GDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGS 122
             G + L  R   +SI DFG VGDG T  T  F+ AV Y+ +F DKGG QL VP G WLTGS
Sbjct:    32 GRRSLSTRPHSVSITDFGAVGDGKTLNTLAFQNAVFYLMSFADKGGAQLYVPPGHWLTGS 91

Query:   123 FILTSNFTLFLQKGAVILGSQE 144
             F LTS+ TLFL+ GAVI+ SQ+
Sbjct:    92 FSLTSHLTLFLENGAVIVASQD 113

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:504954979 AT5G49215 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.0e-16, P = 2.0e-16
 Identities = 44/71 (61%), Positives = 52/71 (73%)

Query:    75 MSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFL 133
             + I DFG VGDG T  T  F+ AV Y+++F DKGG QL VP G WLTGSF LTS+ TLFL
Sbjct:    43 VKITDFGAVGDGKTLNTLAFQNAVFYLKSFADKGGAQLYVPPGRWLTGSFNLTSHLTLFL 102

Query:   134 QKGAVILGSQE 144
             +K AVIL SQ+
Sbjct:   103 EKDAVILASQD 113

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 45/78 (57%), Positives = 54/78 (69%)

Query:    68 LPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
             L  R   +SI +FG VGDG T  T  F+ AV Y+++F DKGG QL VP G WLTGSF LT
Sbjct:    33 LDPRPHSVSILEFGAVGDGKTLNTIAFQNAVFYLKSFADKGGAQLYVPPGKWLTGSFNLT 92

Query:   127 SNFTLFLQKGAVILGSQE 144
             S+ TLFL+KGA IL S +
Sbjct:    93 SHLTLFLEKGATILASPD 110

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 42/75 (56%), Positives = 50/75 (66%)

Query:    71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNF 129
             RK    + DFG VGDG TS T+ FR A+  +      GG QL VP G WLTGSF LTS+F
Sbjct:    41 RKHSAILTDFGAVGDGKTSNTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHF 100

Query:   130 TLFLQKGAVILGSQE 144
             TLF+Q+GA IL SQ+
Sbjct:   101 TLFIQRGATILASQD 115

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 42/70 (60%), Positives = 49/70 (70%)

Query:    76 SIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ 134
             S+ +FG VGDG TS T  FR AV  +  F D GG+ L VP G WLTG+F LTS+FTLFL 
Sbjct:    69 SLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFVPAGRWLTGNFNLTSHFTLFLH 128

Query:   135 KGAVILGSQE 144
             + AVIL SQE
Sbjct:   129 RDAVILASQE 138

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 9.9e-15, P = 9.9e-15
 Identities = 40/69 (57%), Positives = 50/69 (72%)

Query:    75 MSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFL 133
             +SI +FG VGDG T  T+ F+ A+ Y+ +F DKGG +L VP G WLTGSF L S+ TL+L
Sbjct:    43 VSITEFGAVGDGVTLNTKAFQNALFYLNSFSDKGGAKLFVPAGQWLTGSFDLISHLTLWL 102

Query:   134 QKGAVILGS 142
              KGA ILGS
Sbjct:   103 DKGATILGS 111

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 41/75 (54%), Positives = 51/75 (68%)

Query:    71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNF 129
             RK    + +FG VGDG TS T+ F++A+  +      GG QL VP G WLTGSF LTS+F
Sbjct:    52 RKHTAVLTEFGAVGDGKTSNTKAFKEAITKLAPKAADGGVQLIVPPGKWLTGSFNLTSHF 111

Query:   130 TLFLQKGAVILGSQE 144
             TLF+QKGA IL SQ+
Sbjct:   112 TLFIQKGATILASQD 126

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query:    76 SIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ 134
             SI ++G VGDG T  T+ F+ AV ++  +  +GG QL VP G WLTGSF LTS+FTLFL 
Sbjct:    46 SITEYGGVGDGKTLNTKAFQSAVDHLSQYSSEGGAQLFVPAGKWLTGSFNLTSHFTLFLH 105

Query:   135 KGAVILGSQEL 145
             K A++L +Q+L
Sbjct:   106 KDAILLAAQDL 116

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2078531 AT3G42950 [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 43/80 (53%), Positives = 49/80 (61%)

Query:    69 PK-RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
             PK R VV ++ DFG VGDG T  TE F KA+  +     KGG QLNVP G WLT  F LT
Sbjct:    59 PKLRPVVFNLTDFGAVGDGVTINTEAFEKAIYKISKLAKKGGGQLNVPPGRWLTAPFNLT 118

Query:   127 SNFTLFLQKGAVILGSQELK 146
             S  TLFL + A IL  Q+ K
Sbjct:   119 SYMTLFLSENAEILALQDEK 138

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034796001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00008525001	SubName- Full=Chromosome undetermined scaffold_1529, whole genome shotgun sequence; (224 aa)			•						0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
COG5434	542	COG5434, PGU1, Endopygalactorunase [Cell envelope	6e-09

>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 46  SGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFG 104
            G+E    +PA  +     D          S+ D G VGDG T  T   + A+    + G
Sbjct: 61  EGSESEDSSPAINIKTAATDT-------AFSVSDDGAVGDGATDNTAAIQAAIDACASAG 113

Query: 105 DKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGS 142
             GGT + +P G +L+G   L SN TL L +GA +L S
Sbjct: 114 --GGT-VLLPAGTYLSGPLFLKSNVTLHLAEGATLLAS 148

Length = 542

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	99.83
PLN02155	394	polygalacturonase	99.7
PLN02793	443	Probable polygalacturonase	99.69
PLN02218	431	polygalacturonase ADPG	99.64
PLN03010	409	polygalacturonase	99.62
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	99.61
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	99.56
PLN03003	456	Probable polygalacturonase At3g15720	99.47
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	99.29
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	95.8
PF12218	67	End_N_terminal: N terminal extension of bacterioph	95.67
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	92.61
PLN02480	343	Probable pectinesterase	90.34
PF03718	582	Glyco_hydro_49: Glycosyl hydrolase family 49; Inte	88.4
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	87.93

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=1.3e-20  Score=169.63  Aligned_cols=110  Identities=30%  Similarity=0.434  Sum_probs=100.1

Q ss_pred             HhCCCCCCcceeEEEEeeccCCCCCcCCcceeeccCCCCCCCCCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCC
Q 043903           27 ILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGD  105 (146)
Q Consensus        27 ~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~  105 (146)
                      .+++.|++.|.+++|.++.++.++.++.++.|.       ++.+....++|.+|| ++||.+||++|||+||++|+   .
T Consensus        42 ~~~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca---~  111 (542)
T COG5434          42 SSNLVPNTALPDTVRSFNAEGSESEDSSPAINI-------KTAATDTAFSVSDDGAVGDGATDNTAAIQAAIDACA---S  111 (542)
T ss_pred             ccCccccccCCcceeeeccccccccccccceec-------ccccccceeeeccccccccCCccCHHHHHHHHHhhh---h
Confidence            367889999999999999999999998877663       245566789999999 99999999999999999998   5


Q ss_pred             CCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCCCCC
Q 043903          106 KGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK  146 (146)
Q Consensus       106 ~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~d~~  146 (146)
                      .+|++|+||+|+|++|+|+|||+|+|++++||||+++.+|+
T Consensus       112 a~Gg~V~lPaGtylsg~l~LKS~~~L~l~egatl~~~~~p~  152 (542)
T COG5434         112 AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPK  152 (542)
T ss_pred             hcCceEEECCceeEeeeEEEecccEEEecCCceeeCCCChh
Confidence            79999999999999999999999999999999999999874

>PLN02155 polygalacturonase

Probab=99.70  E-value=3e-17  Score=143.18  Aligned_cols=70  Identities=26%  Similarity=0.441  Sum_probs=62.2

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe----CCCeEEEEccCcEEEeCCCC
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL----TSNFTLFLQKGAVILGSQEL  145 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L----~SnvtL~l~~gAtL~as~d~  145 (146)
                      ..++||+||| ++||.+|||+|||+||+++|  ++.||++|+||+|+|++|+|+|    |||++|+|+ | +|+++.|+
T Consensus        25 ~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC--~~~gGg~v~vP~G~yl~g~i~l~gpcksnv~l~l~-G-~l~~~~d~   99 (394)
T PLN02155         25 SNVFNVVSFGAKPDGVTDSTAAFLKAWQGAC--GSASSATVVVPTGTFLLKVITFGGPCKSKITFQVA-G-TVVAPEDY   99 (394)
T ss_pred             CcEEEhhhcCcCCCCccccHHHHHHHHHHHc--ccCCCeEEEECCCcEEEEEEEEcccCCCCceEEEe-e-EEECcccc
Confidence            3679999999 99999999999999997443  2578999999999999999999    899999997 4 88888875

>PLN02793 Probable polygalacturonase

Probab=99.69  E-value=6.1e-17  Score=143.05  Aligned_cols=71  Identities=28%  Similarity=0.514  Sum_probs=64.0

Q ss_pred             CCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEEeeEEe----CCCeEEEEccCcEEEeCCC
Q 043903           71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLTGSFIL----TSNFTLFLQKGAVILGSQE  144 (146)
Q Consensus        71 ~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Yltg~l~L----~SnvtL~l~~gAtL~as~d  144 (146)
                      .+.++||+||| +|||.+|||+|||+||+++|  +..+|++|+||+| +|++++|+|    +|+++|+++  |+|+|+.|
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC--~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~d  124 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC--SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPKD  124 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHh--ccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccCC
Confidence            44789999999 99999999999999999654  2568899999999 599999999    899999997  79999988


Q ss_pred             C
Q 043903          145 L  145 (146)
Q Consensus       145 ~  145 (146)
                      +
T Consensus       125 ~  125 (443)
T PLN02793        125 P  125 (443)
T ss_pred             h
Confidence            6

>PLN02218 polygalacturonase ADPG

Probab=99.64  E-value=5.8e-16  Score=136.50  Aligned_cols=73  Identities=33%  Similarity=0.446  Sum_probs=63.0

Q ss_pred             CCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEEeeEEeC----CCeEEEEccCcEEEeCC
Q 043903           70 KRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLTGSFILT----SNFTLFLQKGAVILGSQ  143 (146)
Q Consensus        70 ~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Yltg~l~L~----SnvtL~l~~gAtL~as~  143 (146)
                      .++.++||+||| +|||.+|||+|||+||+++|  ++.|+++|+||+| +|+++++.|+    ++++|++  +|+|+|++
T Consensus        63 ~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aC--s~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l--~g~L~~s~  138 (431)
T PLN02218         63 RTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKAC--SSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQI--FGTLSASQ  138 (431)
T ss_pred             CCCcEEEeeecccCCCCCcccHHHHHHHHHHhh--hcCCCcEEEECCCCeEEEeeeEecCccCCceEEEE--EEEEEeCC
Confidence            456899999999 99999999999999997544  2567889999999 6999999994    7888887  48999998


Q ss_pred             CCC
Q 043903          144 ELK  146 (146)
Q Consensus       144 d~~  146 (146)
                      |++
T Consensus       139 d~~  141 (431)
T PLN02218        139 KRS  141 (431)
T ss_pred             Chh
Confidence            863

>PLN03010 polygalacturonase

Probab=99.62  E-value=1.2e-15  Score=133.88  Aligned_cols=71  Identities=23%  Similarity=0.423  Sum_probs=60.8

Q ss_pred             CCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCC-CcEEEecCC-EEEEeeEEeCC-----CeEEEEccCcEEEeC
Q 043903           71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKG-GTQLNVPEG-LWLTGSFILTS-----NFTLFLQKGAVILGS  142 (146)
Q Consensus        71 ~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~g-g~~V~IP~G-~Yltg~l~L~S-----nvtL~l~~gAtL~as  142 (146)
                      ....+||+||| ++||++|||+|||+||++||  +..+ +++|+||+| +|++++|.|++     +++|+++  |+|+++
T Consensus        43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac--~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~--G~l~~~  118 (409)
T PLN03010         43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATC--GGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLD--GIIVAP  118 (409)
T ss_pred             CCcEEeeeecCcCCCCCcccHHHHHHHHHHHc--cCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEc--cEEEcc
Confidence            34689999999 99999999999999999876  1212 379999999 79999999994     7888887  799999


Q ss_pred             CCC
Q 043903          143 QEL  145 (146)
Q Consensus       143 ~d~  145 (146)
                      +|+
T Consensus       119 ~d~  121 (409)
T PLN03010        119 SNI  121 (409)
T ss_pred             CCh
Confidence            886

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=99.61  E-value=1e-15  Score=133.97  Aligned_cols=69  Identities=20%  Similarity=0.444  Sum_probs=58.8

Q ss_pred             CCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeC------CCeEEEEccCcEEEe
Q 043903           69 PKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT------SNFTLFLQKGAVILG  141 (146)
Q Consensus        69 ~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~------SnvtL~l~~gAtL~a  141 (146)
                      ..+..++||+||| +|||.+|||+|||+||+++|  ++.||++|+||+|+|++++|+|+      ++++|      +|++
T Consensus        31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC--~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l------~L~~  102 (404)
T PLN02188         31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAAC--ASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF------TLKA  102 (404)
T ss_pred             cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHh--ccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE------EEEc
Confidence            3455789999999 99999999999999998654  25678899999999999999996      45555      8899


Q ss_pred             CCCC
Q 043903          142 SQEL  145 (146)
Q Consensus       142 s~d~  145 (146)
                      ++|+
T Consensus       103 s~d~  106 (404)
T PLN02188        103 ATDL  106 (404)
T ss_pred             CCCH
Confidence            9886

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=99.56  E-value=6.7e-15  Score=113.88  Aligned_cols=65  Identities=32%  Similarity=0.513  Sum_probs=52.1

Q ss_pred             eEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEee-EEeCCCeEEEEccC-cEEEe
Q 043903           74 VMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGS-FILTSNFTLFLQKG-AVILG  141 (146)
Q Consensus        74 ~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~-l~L~SnvtL~l~~g-AtL~a  141 (146)
                      .+||++|| ++||.+|||+|||+||+++.   ..++++|+||+|+|++.. +.++++++|+.+.+ .+++.
T Consensus         1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~---~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~   68 (225)
T PF12708_consen    1 FINVTDFGAKGDGVTDDTAAIQAAIDAAA---AAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILF   68 (225)
T ss_dssp             EEEGGGGT--TEEEEE-HHHHHHHHHHHC---STTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEE
T ss_pred             CcceeecCcCCCCChhHHHHHHHhhhhcc---cCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEE
Confidence            48999999 99999999999999996554   578999999999999655 99999999999876 34443

...

>PLN03003 Probable polygalacturonase At3g15720

Probab=99.47  E-value=9.9e-14  Score=123.28  Aligned_cols=71  Identities=25%  Similarity=0.477  Sum_probs=58.5

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCE-EEEeeEEeCCC---eEEEEccCcEEEeCCC
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGL-WLTGSFILTSN---FTLFLQKGAVILGSQE  144 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~-Yltg~l~L~Sn---vtL~l~~gAtL~as~d  144 (146)
                      +..+||++|| +|||.+|||+|||+||++||  ++.++++|+||+|+ |+++++.|+++   ..+.++..++|+++.+
T Consensus        21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC--~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~   96 (456)
T PLN03003         21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVC--SGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK   96 (456)
T ss_pred             eeEEehhhcCCCCCCCcccHHHHHHHHHHhh--hccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc
Confidence            4679999999 99999999999999999965  35688999999994 89999999763   1244555678887654

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=99.29  E-value=3.8e-12  Score=112.92  Aligned_cols=63  Identities=22%  Similarity=0.383  Sum_probs=58.3

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcE
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAV  138 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAt  138 (146)
                      ...+|+++|| ++||.+|+|+|||+||++|.    .++.+|.+|+|+|++|+|.|+++++|..++|++
T Consensus        35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa----~gG~tV~Lp~G~Y~~G~L~L~spltL~G~~gAt   98 (455)
T TIGR03808        35 TLGRDATQYGVRPNSPDDQTRALQRAIDEAA----RAQTPLALPPGVYRTGPLRLPSGAQLIGVRGAT   98 (455)
T ss_pred             ccCCCHHHcCcCCCCcchHHHHHHHHHHHhh----cCCCEEEECCCceecccEEECCCcEEEecCCcE
Confidence            3459999999 99999999999999999986    467899999999999999999999999999996

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=95.80  E-value=0.018  Score=49.06  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=35.5

Q ss_pred             HHHHHHHhhhcCCCCCcEEEecCCEEE-EeeEEeC-CCeEEEEccC--cEEEe
Q 043903           93 FRKAVRYVQAFGDKGGTQLNVPEGLWL-TGSFILT-SNFTLFLQKG--AVILG  141 (146)
Q Consensus        93 ~q~Ai~aa~~~~~~gg~~V~IP~G~Yl-tg~l~L~-SnvtL~l~~g--AtL~a  141 (146)
                      ||+|+++|.     .|.+|+||+|+|. .++|.+. ++++|..+..  ++|-+
T Consensus         1 iQ~Ai~~A~-----~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~   48 (314)
T TIGR03805         1 LQEALIAAQ-----PGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDF   48 (314)
T ss_pred             CHhHHhhCC-----CCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEec
Confidence            699999996     6889999999998 5889995 8899987643  45544

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length

Probab=95.67  E-value=0.015  Score=39.52  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=23.2

Q ss_pred             CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEEeeEE
Q 043903           82 VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLTGSFI  124 (146)
Q Consensus        82 ~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Yltg~l~  124 (146)
                      +|||++|||+||.+++.+..     .|.+|- -.| +|.+.++-
T Consensus         2 ~GDGvtdDt~A~~a~l~a~~-----~g~~ID-g~GlTykVs~lP   39 (67)
T PF12218_consen    2 KGDGVTDDTAAITAALEASP-----VGRKID-GAGLTYKVSSLP   39 (67)
T ss_dssp             --CCCCE-HHHHHHHHHHS------TTS-EE--TT-EEEESS--
T ss_pred             CCccccCcHHHHHHHHhccC-----CCeEEe-cCCceEEEeeCc
Confidence            69999999999999999775     444444 445 78877653

The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=92.61  E-value=0.028  Score=36.49  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +++.||+|++.|.|.|+++...|
T Consensus        58 ~~i~~L~p~t~Y~~~v~a~~~~g   80 (85)
T PF00041_consen   58 YTITGLQPGTTYEFRVRAVNSDG   80 (85)
T ss_dssp             EEEESCCTTSEEEEEEEEEETTE
T ss_pred             eeeccCCCCCEEEEEEEEEeCCc
Confidence            46789999999999999988776

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>PLN02480 Probable pectinesterase

Probab=90.34  E-value=0.65  Score=40.52  Aligned_cols=52  Identities=10%  Similarity=0.089  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc--CcEEEe
Q 043903           88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK--GAVILG  141 (146)
Q Consensus        88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~--gAtL~a  141 (146)
                      .|=.-||+||+++.. ......+|+|.+|+|. ..+.+   +.+++|..+.  ..+|.+
T Consensus        58 g~f~TIQ~AIdaap~-~~~~~~~I~Ik~GvY~-E~V~I~~~kp~ItL~G~g~~~TvI~~  114 (343)
T PLN02480         58 GDFTSVQSAIDAVPV-GNSEWIIVHLRKGVYR-EKVHIPENKPFIFMRGNGKGRTSIVW  114 (343)
T ss_pred             CCcccHHHHHhhCcc-CCCceEEEEEcCcEEE-EEEEECCCCceEEEEecCCCCeEEEc
Confidence            356789999999972 0112236889999998 67777   5678887664  344543

>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3

Probab=88.40  E-value=0.7  Score=42.91  Aligned_cols=35  Identities=31%  Similarity=0.488  Sum_probs=26.8

Q ss_pred             CcEEEecCCEEEEee---EEeCCCe-EEEEccCcEEEeC
Q 043903          108 GTQLNVPEGLWLTGS---FILTSNF-TLFLQKGAVILGS  142 (146)
Q Consensus       108 g~~V~IP~G~Yltg~---l~L~Snv-tL~l~~gAtL~as  142 (146)
                      ..+||+++|+|-.|.   +.|++|+ ++++++||.+++.
T Consensus       232 ~~~lYF~PGVy~ig~~~~l~L~sn~~~VYlApGAyVkGA  270 (582)
T PF03718_consen  232 KDTLYFKPGVYWIGSDYHLRLPSNTKWVYLAPGAYVKGA  270 (582)
T ss_dssp             SSEEEE-SEEEEEBCTC-EEE-TT--EEEE-TTEEEES-
T ss_pred             cceEEeCCceEEeCCCccEEECCCccEEEEcCCcEEEEE
Confidence            479999999998776   9999985 9999999999875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=87.93  E-value=0.96  Score=37.83  Aligned_cols=40  Identities=23%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhhhcCCCCCcEEEecCCEEE--E---eeEEeCCCeEEEEcc
Q 043903           91 EVFRKAVRYVQAFGDKGGTQLNVPEGLWL--T---GSFILTSNFTLFLQK  135 (146)
Q Consensus        91 ~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl--t---g~l~L~SnvtL~l~~  135 (146)
                      +-|++|++.|.     .|.+|+|-+|+|.  +   -||.++++++|..++
T Consensus        16 ~Ti~~A~~~a~-----~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~   60 (246)
T PF07602_consen   16 KTITKALQAAQ-----PGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNE   60 (246)
T ss_pred             HHHHHHHHhCC-----CCCEEEECCceeccccCCcccEEecCCeEEeecc
Confidence            45899999886     6789999999996  3   478999999997653

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
2uve_A	608	Structure Of Yersinia Enterocolitica Family 28 Exop		2e-06
3jur_A	448	The Crystal Structure Of A Hyperthermoactive Exopol		3e-06

>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 48  AEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDK 106
           A+G+L      VA  P       +  +++++DFG + DG T  T+  ++A+        K
Sbjct: 135 ADGSL-----SVASKPITAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSC-----K 184
Query: 107 GGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQ 143
            G ++ +P G + +G+  L S+ TL LQ GA++LGS+
Sbjct: 185 PGCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSE 221

>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 68  LPKRKVVMSIKDFGV-GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
           +P R+V  ++ DFG  GDG T  +E F++A+   +    +GG +L VPEG++LTG   L 
Sbjct: 23  IPDREV--NLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLK 77
Query: 127 SNFTLFLQKGAV 138
           SN  L + KG +
Sbjct: 78  SNIELHV-KGTI 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	3e-20
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	7e-18
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	1e-16
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	2e-15
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	1e-11
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	2e-10
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	1e-06
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	5e-06
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	2e-05
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	2e-04

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score = 85.1 bits (210), Expect = 3e-20
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 54  NPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLN 112
           + +  VA  P       +  +++++DFG + DG T  T+  ++A+        K G ++ 
Sbjct: 136 DGSLSVASKPITAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSC-----KPGCRVE 190

Query: 113 VPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK 146
           +P G + +G+  L S+ TL LQ GA++LGS+   
Sbjct: 191 IPAGTYKSGALWLKSDMTLNLQAGAILLGSENPD 224

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464

 Score = 77.9 bits (191), Expect = 7e-18
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 70  KRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSN 128
           +      + DFG  G+ T+  +   ++A+  +       G  L +P G +      + SN
Sbjct: 18  QDVNYDLVDDFGANGNDTSDDSNALQRAINAISR--KPNGGTLLIPNGTYHFLGIQMKSN 75

Query: 129 FTLFLQKGAVILGSQ 143
             + ++   +I  + 
Sbjct: 76  VHIRVESDVIIKPTW 90

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)

Query: 68  LPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILT 126
           +P R+V  ++ DFG  GDG T  +E F++A+   +    +GG +L VPEG++LTG   L 
Sbjct: 23  IPDREV--NLLDFGARGDGRTDCSESFKRAI---EELSKQGGGRLIVPEGVFLTGPIHLK 77

Query: 127 SNFTLFLQKGAVILGSQE 144
           SN  L ++     +   E
Sbjct: 78  SNIELHVKGTIKFIPDPE 95

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377

 Score = 70.6 bits (172), Expect = 2e-15
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 76  SIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ 134
           ++KDFG +GDG +      + A+    A    GG  + +P G +   +     +  L L+
Sbjct: 4   NVKDFGALGDGVSDDRASIQAAI---DAAYAAGGGTVYLPAGEYRVSAAGEPGDGCLMLK 60

Query: 135 KGAVILGSQE 144
            G  + G+  
Sbjct: 61  DGVYLAGAGM 70

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 8/70 (11%)

Query: 80  FGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG---LWLTGSFILTSNFTLFLQKG 136
             +   +++ T   +KA+       D+G   + +  G   ++L+G   L S  +L + KG
Sbjct: 16  TTLKADSSTATSTIQKALNNC----DQGKA-VRLSAGSTSVFLSGPLSLPSGVSLLIDKG 70

Query: 137 AVILGSQELK 146
             +      K
Sbjct: 71  VTLRAVNNAK 80

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 20/89 (22%)

Query: 76  SIKDFG-VGDGTTSTTEVFRKAVRYVQ----AFGDKGGTQLNVPEG-------------L 117
           S+ DF     G          + +Y+Q         GG  + +P G              
Sbjct: 42  SLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIA 101

Query: 118 WLTGSFILTSNFTLFLQKGAVILGSQELK 146
             +G   L SN  L ++    I  S    
Sbjct: 102 GHSGIIQLRSNVNLNIE--GRIHLSPFFD 128

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 70  KRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWL-TGSFILTS 127
            ++  +S+K +G  GDG T     F KA+       + G   + VP G ++ +    L S
Sbjct: 18  LKQFGVSVKTYGAKGDGVTDDIRAFEKAI-------ESGFP-VYVPYGTFMVSRGIKLPS 69

Query: 128 NFTL 131
           N  L
Sbjct: 70  NTVL 73

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 70  KRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSN 128
           K K  +SI DFG + DG T   +  + A+  V +     G +L +P      G  +    
Sbjct: 47  KNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLP--SGGELFIPASNQAVGYIV---G 101

Query: 129 FTLFLQKGAVILGS 142
            TL +  G  I G 
Sbjct: 102 STLLIPGGVNIRGV 115

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 5/73 (6%)

Query: 73  VVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTL 131
              +        D  T TT    KA              + VP G  L  +  LTS   +
Sbjct: 16  ATFASASPIEARDSCTFTTAAAAKAG--KAKCSTITLNNIEVPAGTTLDLTG-LTSGTKV 72

Query: 132 FLQKGAVILGSQE 144
             + G      +E
Sbjct: 73  IFE-GTTTFQYEE 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	99.89
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	99.74
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	99.68
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	99.58
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	99.54
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	99.47
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	99.47
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	99.44
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	99.36
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.36
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	99.32
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.23
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	98.32
2inu_A	410	Insulin fructotransferase; right-handed parallel b	97.85
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.83
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	97.72
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	97.71
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	97.59
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	97.45
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	97.21
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	96.85
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	96.02
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	95.87
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	95.5
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	94.73
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	94.2
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	94.14
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	93.97
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	93.73
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	93.6
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	93.49
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	93.46
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	93.44
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	93.34
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	93.34
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	93.21
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	93.11
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	93.11
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	93.03
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	92.95
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	92.88
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	92.78
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	92.6
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	92.56
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	92.43
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	92.42
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	92.41
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	92.4
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	92.32
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	92.27
2crm_A	120	Fibronectin type-III domain containing protein 3A;	92.18
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	92.16
2crz_A	110	Fibronectin type-III domain containing protein 3A;	92.16
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	92.08
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	91.96
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	91.93
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	91.82
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	91.64
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	91.6
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	91.6
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	91.59
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	91.5
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	91.45
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	91.25
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	91.22
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	91.21
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	91.17
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	91.16
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	91.07
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	91.03
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	90.99
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	90.94
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	90.83
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	90.81
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	90.72
2x3h_A	542	K5 lyase, K5A lyase; bacteriophage, glycosaminogly	90.64
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	90.57
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	90.49
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	90.41
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	90.31
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	90.16
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	90.05
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	89.98
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	89.85
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	89.81
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	89.54
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	89.53
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	89.46
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	89.39
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	89.17
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	89.09
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	88.86
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	88.82
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	88.43
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	88.36
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	88.34
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	87.97
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	87.81
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	87.22
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	87.19
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	87.16
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	86.5
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	86.5
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	86.19
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	85.92
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	85.91
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	85.39
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	85.37
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	85.37
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	85.25
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	85.18
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	84.91
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	84.67
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	84.6
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	83.94
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	83.78
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	82.76
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	81.23
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	81.03
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	80.52
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	80.46

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=99.89  E-value=1.9e-23  Score=187.77  Aligned_cols=109  Identities=25%  Similarity=0.473  Sum_probs=98.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceeeccCCCCCCCCCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhh
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQA  102 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~  102 (146)
                      .+++.+|+|+|+|.|+|++++.+|..+.++..+...        +.+++..+||++|| ++||.+|||+|||+||++|. 
T Consensus       114 ~~~v~~L~p~T~Y~~~v~a~d~~G~~s~ds~~V~~~--------T~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~c~-  184 (608)
T 2uvf_A          114 NFTVIGLKPETSYQFTVKAQYADGSLSVASKPITAK--------TSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCK-  184 (608)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTSCBCCCCCCEEEE--------CCCCCCEEEGGGGTCCSSSSCCCHHHHHHHHHTCC-
T ss_pred             eEEecCCCCCCEEEEEEEEecCCCcccccchhcccc--------cccCCCEEecccccccCCCCccCHHHHHHHHHhcC-
Confidence            356789999999999999999999988887776653        45667899999999 99999999999999999775 


Q ss_pred             cCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCCCC
Q 043903          103 FGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQEL  145 (146)
Q Consensus       103 ~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~d~  145 (146)
                          .|++|+||+|+|++|+|.|+|+++|+|++||+|+++.|+
T Consensus       185 ----~g~~v~vP~G~y~~g~i~lks~v~L~l~~gatL~~s~d~  223 (608)
T 2uvf_A          185 ----PGCRVEIPAGTYKSGALWLKSDMTLNLQAGAILLGSENP  223 (608)
T ss_dssp             ----TTEEEEECSEEEEECCEECCSSEEEEECTTEEEEECSCG
T ss_pred             ----CCCEEEECCCceEecceeccCceEEEecCCcEEEecCCH
Confidence                389999999999999999999999999999999999875

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=99.74  E-value=2e-18  Score=150.85  Aligned_cols=73  Identities=34%  Similarity=0.574  Sum_probs=67.2

Q ss_pred             CCCCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCCCCC
Q 043903           69 PKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQELK  146 (146)
Q Consensus        69 ~~~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~d~~  146 (146)
                      ..++..+||++|| +|||.+|||+|||+||++|+   +.+|++|+||+|+|++|+|+|+|+++|+++  |+|+|++|++
T Consensus        22 ~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~---~~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~   95 (448)
T 3jur_A           22 QIPDREVNLLDFGARGDGRTDCSESFKRAIEELS---KQGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPE   95 (448)
T ss_dssp             CCCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHH---HHTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGG
T ss_pred             CCCCcEEEEEecccCCCCCeecHHHHHHHHHhhh---hcCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHH
Confidence            4556789999999 99999999999999999987   457899999999999999999999999998  8999999863

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=99.68  E-value=7.8e-17  Score=141.66  Aligned_cols=72  Identities=21%  Similarity=0.421  Sum_probs=66.1

Q ss_pred             CCCeeEe-eeecc-CCCCcchhHHHHHHHHHHhhhcCCC-CCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCCC
Q 043903           70 KRKVVMS-IKDFG-VGDGTTSTTEVFRKAVRYVQAFGDK-GGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQE  144 (146)
Q Consensus        70 ~~~~~~n-V~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~-gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~d  144 (146)
                      .+...++ |++|| ++||.+|||+|||+||++|+   +. ++++|+||+|+|++++|.|+|+++|+|++||+|+++.+
T Consensus        17 ~~~~~~~~V~dfGA~gDG~tDdT~Aiq~Aidac~---~~~ggg~V~vP~GtYl~g~I~lks~v~L~l~~GatL~~s~~   91 (464)
T 1h80_A           17 QQDVNYDLVDDFGANGNDTSDDSNALQRAINAIS---RKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTWN   91 (464)
T ss_dssp             CCSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHH---TSTTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEECCC
T ss_pred             CCcceeeehhccCcCCCCCchhHHHHHHHHHHHh---hccCCcEEEECCCeEEEeeEeccCceEEEEcCCcEEEeccC
Confidence            3456788 99999 99999999999999999987   44 78999999999999999999999999999999999973

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=99.58  E-value=1.6e-15  Score=126.32  Aligned_cols=68  Identities=26%  Similarity=0.441  Sum_probs=60.2

Q ss_pred             eEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEE--------eeEEeCCCeEEEEc-cC-cEEEeC
Q 043903           74 VMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLT--------GSFILTSNFTLFLQ-KG-AVILGS  142 (146)
Q Consensus        74 ~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Ylt--------g~l~L~SnvtL~l~-~g-AtL~as  142 (146)
                      .+||++|| ++||.+|||+|||+||++|+   +.++++|+||+|+|++        |+|.++|+++|+++ ++ ++|++.
T Consensus         2 ~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~---~~gg~~v~~p~G~y~~~~~~~~~~g~l~~~~~v~l~g~g~~~t~l~~~   78 (377)
T 2pyg_A            2 DYNVKDFGALGDGVSDDRASIQAAIDAAY---AAGGGTVYLPAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLI   78 (377)
T ss_dssp             CEEGGGGTCCCEEEEECHHHHHHHHHHHH---HTTSEEEEECSEEEEECCCSSGGGCSEECCTTEEEEESSBTTEEEEEC
T ss_pred             EeeeeecCCCCCCCcchHHHHHHHHHHHH---hcCCCEEEECCeEEEEcccccCCcccEEecCCeEEEEcCCCCcEEEec
Confidence            58999999 99999999999999999998   4578999999999997        68999999999999 55 566766


Q ss_pred             CC
Q 043903          143 QE  144 (146)
Q Consensus       143 ~d  144 (146)
                      ++
T Consensus        79 ~~   80 (377)
T 2pyg_A           79 DG   80 (377)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=99.54  E-value=3.8e-15  Score=131.20  Aligned_cols=70  Identities=23%  Similarity=0.382  Sum_probs=62.2

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC----EEEE-eeEEeCCCeEEEEccCcEEEeCC
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG----LWLT-GSFILTSNFTLFLQKGAVILGSQ  143 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G----~Ylt-g~l~L~SnvtL~l~~gAtL~as~  143 (146)
                      +..+||+||| +|||++|||+|||+||++|++  ..+|++|+||+|    +|++ ++|+|+||++|+++.+++|+++.
T Consensus        49 s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a--~~GGGtVyVPaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~  124 (514)
T 2vbk_A           49 KEAISILDFGVIDDGVTDNYQAIQNAIDAVAS--LPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAK  124 (514)
T ss_dssp             TTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHT--STTCEEEECCCCSSTTCEEESSCEEECTTEEEECCSTTSEEEEC
T ss_pred             CcEEEeeccCcCCCCCcccHHHHHHHHHHHhh--cCCCeEEEECCCCcceeEEECCeEEecCCeEEEEecCceEeecc
Confidence            3579999999 999999999999999999982  347899999999    8986 68999999999999999887643

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=99.47  E-value=4.5e-14  Score=127.57  Aligned_cols=66  Identities=26%  Similarity=0.411  Sum_probs=60.3

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCC-EEEE------------eeEEeCCCeEEEEccCc
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG-LWLT------------GSFILTSNFTLFLQKGA  137 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G-~Ylt------------g~l~L~SnvtL~l~~gA  137 (146)
                      ...+||++|| ++|    ||+|||+||++|+   +.+|++|+||+| +|++            |+|.|+||++|+|++  
T Consensus        49 ~~~~nV~dfGA~gD----dT~AIqkAIdaCs---~~GGgtV~VPaG~tYLt~sv~~gp~~~~sGpI~LkSnVtL~LdG--  119 (600)
T 2x6w_A           49 DPSGNVIQPGPNVD----SRQYLQAAIDYVS---SNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQLRSNVNLNIEG--  119 (600)
T ss_dssp             CTTSCBCCCCTTCC----CHHHHHHHHHHHH---HTTCEEEEECTTCEEEECSCCCGGGGGGTEEEECCTTEEEEECS--
T ss_pred             CcEEeeecCCCCcc----CHHHHHHHHHHhh---hcCCCEEEECCCCEEEecccccccccccccceEEcCceEEeeec--
Confidence            4579999999 999    9999999999987   568999999999 9999            999999999999985  


Q ss_pred             EEEeCCCCC
Q 043903          138 VILGSQELK  146 (146)
Q Consensus       138 tL~as~d~~  146 (146)
                      +|++++|++
T Consensus       120 tL~as~d~~  128 (600)
T 2x6w_A          120 RIHLSPFFD  128 (600)
T ss_dssp             EEEECGGGT
T ss_pred             EEEEcCChH
Confidence            999998753

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=99.47  E-value=4.9e-14  Score=121.85  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             eeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEee-EEeC--CCeEEEEccCcEEEeC
Q 043903           73 VVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGS-FILT--SNFTLFLQKGAVILGS  142 (146)
Q Consensus        73 ~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~-l~L~--SnvtL~l~~gAtL~as  142 (146)
                      ..+||++|| ++||.+|||+|||+||++|.     ++++|+||+|+|++++ |.|+  ++++|+++ |+++..+
T Consensus        19 ~~~~V~~~GA~~dg~tddT~Aiq~Ai~ac~-----~g~~V~vP~G~Yli~~~l~l~g~s~v~l~l~-G~~l~~~   86 (422)
T 1rmg_A           19 KTCNILSYGAVADNSTDVGPAITSAWAACK-----SGGLVYIPSGNYALNTWVTLTGGSATAIQLD-GIIYRTG   86 (422)
T ss_dssp             CEEEGGGGTCCCSSSSBCHHHHHHHHHHHT-----BTCEEEECSSEEEECSCEEEESCEEEEEEEC-SEEEECC
T ss_pred             cEEEeeeccccCCCCcccHHHHHHHHHHCC-----CCCEEEECCCeEEeCCceeecCCCeEEEEEc-CcEEccc
Confidence            579999999 99999999999999999775     5899999999999986 9998  68999987 6555543

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=99.44  E-value=1.4e-13  Score=116.65  Aligned_cols=66  Identities=17%  Similarity=0.355  Sum_probs=55.2

Q ss_pred             CCeeEeeeeccCCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecC---CEEEEeeEEeCCCeEEEEccCcEEEeCCCC
Q 043903           71 RKVVMSIKDFGVGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPE---GLWLTGSFILTSNFTLFLQKGAVILGSQEL  145 (146)
Q Consensus        71 ~~~~~nV~dfG~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~---G~Yltg~l~L~SnvtL~l~~gAtL~as~d~  145 (146)
                      .+..++|.+||    .+|||+|||+||++|.    . |++|+||+   |+|++|+|.|+|+++|++++||+|++++|+
T Consensus        11 ~p~~~~v~~~G----~~~dT~aiq~Ai~ac~----~-Gg~v~~~~~~~g~yl~g~i~l~s~vtL~l~~Ga~L~~s~~~   79 (376)
T 1bhe_A           11 TPSSCTTLKAD----SSTATSTIQKALNNCD----Q-GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNA   79 (376)
T ss_dssp             CCCEEEEEECC----SSBCHHHHHHHHTTCC----T-TCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCS
T ss_pred             CCCeEEECCCC----CCccHHHHHHHHHHhc----c-CCcEEEECCCCceEEEeEEEECCCCEEEECCCeEEEeCCCH
Confidence            33469999985    4689999999999775    3 45555554   899999999999999999999999999875

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=99.36  E-value=5.4e-13  Score=120.79  Aligned_cols=65  Identities=32%  Similarity=0.428  Sum_probs=58.6

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEE-eeEEeCCCeEEEEcc--CcEEEeCCC
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLT-GSFILTSNFTLFLQK--GAVILGSQE  144 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Ylt-g~l~L~SnvtL~l~~--gAtL~as~d  144 (146)
                      +..+||+||| ++||.+|||+|||+||++       + ++|+||+|+|++ ++|.|+++++|+++.  .++|+++++
T Consensus        20 ~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~~-------G-g~V~iP~GtYlis~~l~l~snv~L~g~g~~~t~L~~~~~   88 (609)
T 3gq8_A           20 QFGVSVKTYGAKGDGVTDDIRAFEKAIES-------G-FPVYVPYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFMDS   88 (609)
T ss_dssp             SSSEEGGGGTCCCEEEEECHHHHHHHHHT-------S-SCEEECSEEEEESSCEEECSSEEEEESCTTTEEEEECTT
T ss_pred             CcEEEeEecccCCCCCchhHHHHHHHHHc-------C-CEEEECCccEEEeCceEECCCcEEEEeeCCCCEEEeCCC
Confidence            3579999999 999999999999999992       3 899999999998 999999999999986  478888766

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.36  E-value=5.7e-13  Score=122.88  Aligned_cols=75  Identities=19%  Similarity=0.346  Sum_probs=62.3

Q ss_pred             CCeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCC------CCCcEEEecCCEEE-EeeEEeCCCeEEEEccC--cEEE
Q 043903           71 RKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGD------KGGTQLNVPEGLWL-TGSFILTSNFTLFLQKG--AVIL  140 (146)
Q Consensus        71 ~~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~------~gg~~V~IP~G~Yl-tg~l~L~SnvtL~l~~g--AtL~  140 (146)
                      .+..+||+||| +|||++|||+|||+||++|.+|..      ..+++||||+|+|+ +++|++++++.|..+..  .+|+
T Consensus        46 y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P~GtYlvs~tI~l~~~t~L~G~~~~~pvIk  125 (758)
T 3eqn_A           46 YPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPGTYKVSSPLVVLYQTQLIGDAKNLPTLL  125 (758)
T ss_dssp             CCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSCSCTTCCCCSSSCEEEEECSSEEEESSCEECCTTEEEEECSSSCCEEE
T ss_pred             CeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhhcccccccccccceEEEECCceEEEcccEEccCCeEEEecCCCCCeEe
Confidence            33578999999 999999999999999999864311      12369999999998 57899999999999977  5899


Q ss_pred             eCCCC
Q 043903          141 GSQEL  145 (146)
Q Consensus       141 as~d~  145 (146)
                      ++++.
T Consensus       126 a~~~F  130 (758)
T 3eqn_A          126 AAPNF  130 (758)
T ss_dssp             ECTTC
T ss_pred             cCCCC
Confidence            87653

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.23  E-value=5.8e-12  Score=116.21  Aligned_cols=67  Identities=19%  Similarity=0.338  Sum_probs=60.8

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEE-EeeEEeCCCeEEEEccCcEEEeCC
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWL-TGSFILTSNFTLFLQKGAVILGSQ  143 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl-tg~l~L~SnvtL~l~~gAtL~as~  143 (146)
                      ...+||+||| +|||.+|||+|||+||+++.     ++.+||||+|+|+ +++|+++++++|..+.-++|++..
T Consensus       398 ~~~vnVkd~GA~GDG~tDDT~Ai~~al~aa~-----~g~~v~~P~G~Y~vt~Ti~ip~~~~ivG~~~~~I~~~G  466 (758)
T 3eqn_A          398 SDFVSVRSQGAKGDGHTDDTQAIKNVFAKYA-----GCKIIFFDAGTYIVTDTIQIPAGTQIVGEVWSVIMGTG  466 (758)
T ss_dssp             GGEEETTTTTCCCEEEEECHHHHHHHHHHHT-----TTSEEECCSEEEEESSCEEECTTCEEECCSSEEEEECS
T ss_pred             cceEEeeeccccCCCCchhHHHHHHHHHHhc-----CCCEEEECCCEeEECCeEEcCCCCEEEecccceEecCC
Confidence            3689999999 99999999999999999664     7899999999998 678999999999998889999864

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=98.32  E-value=2.9e-08  Score=88.70  Aligned_cols=67  Identities=12%  Similarity=0.226  Sum_probs=54.7

Q ss_pred             Eeeeecc-CCCCcchhHHHHHHHHHHhhhcCC-----------------------CCCcEEEecCCEEEE---eeEEeCC
Q 043903           75 MSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGD-----------------------KGGTQLNVPEGLWLT---GSFILTS  127 (146)
Q Consensus        75 ~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~-----------------------~gg~~V~IP~G~Ylt---g~l~L~S  127 (146)
                      +|...|| ++||.++++.+|. +|...++...                       .++++|+||+|+|++   |+|.|+|
T Consensus       143 ~n~~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ggg~v~vP~G~yl~g~~G~i~l~s  221 (549)
T 1x0c_A          143 FDDDLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPGVYYFTGHDHMVLSS  221 (549)
T ss_dssp             EGGGEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCCCSEEEECSEEEECCTTCCEEECT
T ss_pred             ECCccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCCCCEEEECCeEEecCCceEEEecC
Confidence            4445799 9999999999988 6655443211                       478999999999996   7999999


Q ss_pred             CeE-EEEccCcEEEeC
Q 043903          128 NFT-LFLQKGAVILGS  142 (146)
Q Consensus       128 nvt-L~l~~gAtL~as  142 (146)
                      |++ |++++||+|+++
T Consensus       222 ~~~~L~l~~GA~L~gs  237 (549)
T 1x0c_A          222 SVTWVYFAPGAYVKGA  237 (549)
T ss_dssp             TCCEEEECTTEEEESC
T ss_pred             CCCeEecCCCCEEEEE
Confidence            999 999999998875

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=97.85  E-value=1.4e-05  Score=69.51  Aligned_cols=64  Identities=8%  Similarity=0.128  Sum_probs=54.4

Q ss_pred             CeeEeeeec----c-CCCCcchhHHHHHHHHHHhhhcC----CCCCcEEEecCCEEE-EeeEEeCCC-eEEEEcc
Q 043903           72 KVVMSIKDF----G-VGDGTTSTTEVFRKAVRYVQAFG----DKGGTQLNVPEGLWL-TGSFILTSN-FTLFLQK  135 (146)
Q Consensus        72 ~~~~nV~df----G-~gDG~tDdT~A~q~Ai~aa~~~~----~~gg~~V~IP~G~Yl-tg~l~L~Sn-vtL~l~~  135 (146)
                      ...|||++|    + +||+.+|++++|+.+|+++.+.+    ++.|.+|+||+|+|. .|++.+.-. ++|..+.
T Consensus        12 ~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~   86 (410)
T 2inu_A           12 PNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFG   86 (410)
T ss_dssp             CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTSCCCEEEECCSEEEEECSCEEECCTTEEEECSC
T ss_pred             CceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccCCCCCEEEECCCeeccCCcEEEecCcEEEEecC
Confidence            367999999    6 88899999999999999887421    467899999999997 699999544 9998876

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.83  E-value=1.2e-05  Score=72.38  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=34.4

Q ss_pred             CCCcEEEecCCEEEE-------------eeEEeCCCeE-EEEccCcEEEeC
Q 043903          106 KGGTQLNVPEGLWLT-------------GSFILTSNFT-LFLQKGAVILGS  142 (146)
Q Consensus       106 ~gg~~V~IP~G~Ylt-------------g~l~L~Snvt-L~l~~gAtL~as  142 (146)
                      .|+++||||+|+|++             |+|+|+||++ |++++||+|+++
T Consensus       229 ~ggg~v~vP~G~yl~~~~~~~gpc~~g~G~i~lkSnvt~L~L~~GA~l~g~  279 (574)
T 1ogo_X          229 GAKSILYFPPGVYWMNQDQSGNSGKLGSNHIRLNSNTYWVYLAPGAYVKGA  279 (574)
T ss_dssp             CSSSEEEECSEEEEECBCTTCCBSCSSSCCEECCTTCCEEEECTTEEEESC
T ss_pred             CCCCEEEECCcEEEEeccccCCcccccceEEEecCCCceEEecCCcEEEcc
Confidence            488999999999999             6899999999 999999999875

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=97.72  E-value=5.6e-06  Score=69.29  Aligned_cols=42  Identities=21%  Similarity=0.096  Sum_probs=35.7

Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeE-EeCCCeEEEEc
Q 043903           88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSF-ILTSNFTLFLQ  134 (146)
Q Consensus        88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l-~L~SnvtL~l~  134 (146)
                      .||+|||+||++|.   ..++++|+||+|+|+.  | .|+++++|+++
T Consensus         6 ~dt~aiq~ai~~c~---~~~g~~v~vP~G~~~~--l~~l~~~~~l~~~   48 (339)
T 2iq7_A            6 TDAAAAIKGKASCT---SIILNGIVVPAGTTLD--MTGLKSGTTVTFQ   48 (339)
T ss_dssp             SCHHHHHHHGGGCS---EEEEESCEECTTCCEE--ECSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHhh---ccCCCeEEECCCEEEE--eeccCCCeEEEEe
Confidence            57999999999986   4568899999999984  4 56889999887

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=97.71  E-value=6.8e-06  Score=69.18  Aligned_cols=41  Identities=20%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeE-EeCCCeEEEEc
Q 043903           89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSF-ILTSNFTLFLQ  134 (146)
Q Consensus        89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l-~L~SnvtL~l~  134 (146)
                      ||+|||+|+++|.   ..++++|+||+|+|+.  + .|+++++|+++
T Consensus         7 ~t~aiq~ai~~c~---~~gg~~v~vP~G~~l~--l~~l~~~~~l~~~   48 (349)
T 1hg8_A            7 EYSGLATAVSSCK---NIVLNGFQVPTGKQLD--LSSLQNDSTVTFK   48 (349)
T ss_dssp             SGGGHHHHHHHCS---EEEECCCEECTTCCEE--ETTCCTTCEEEEC
T ss_pred             CHHHHHHHHHhcc---ccCCCEEEECCCEEEE--eeccCCCeEEEEc
Confidence            7899999999996   4568899999999984  4 56889999997

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=97.59  E-value=9.3e-06  Score=67.85  Aligned_cols=42  Identities=14%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeE-EeCCCeEEEEc
Q 043903           88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSF-ILTSNFTLFLQ  134 (146)
Q Consensus        88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l-~L~SnvtL~l~  134 (146)
                      .||+|||+||++|.   ..++++|+||+|+|+.  | .|+++++|+++
T Consensus         6 ~~t~aiq~ai~~c~---~~gg~~v~vP~G~~~~--l~~l~~~~~l~~~   48 (336)
T 1nhc_A            6 TSASEASESISSCS---DVVLSSIEVPAGETLD--LSDAADGSTITFE   48 (336)
T ss_dssp             SSHHHHHHHGGGCS---EEEEESCEECTTCCEE--CTTCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHhh---ccCCCeEEECCCEEEE--eeccCCCeEEEEe
Confidence            57999999999986   4567899999999983  4 56888888886

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=97.45  E-value=2.5e-05  Score=65.38  Aligned_cols=46  Identities=13%  Similarity=0.042  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeE-EeCCCeEEEEccCcEEEe
Q 043903           89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSF-ILTSNFTLFLQKGAVILG  141 (146)
Q Consensus        89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l-~L~SnvtL~l~~gAtL~a  141 (146)
                      -++|||+||++|.   ..++++|+||+|+|+.  | .|+++++|+++.  ++.+
T Consensus        11 g~~aiq~ai~~c~---~~gg~~v~vP~G~~l~--l~~l~~~~~l~~~g--~~~~   57 (339)
T 1ia5_A           11 GASSASKSKTSCS---TIVLSNVAVPSGTTLD--LTKLNDGTHVIFSG--ETTF   57 (339)
T ss_dssp             HHHHHHHHGGGCS---EEEEESCEECTTCCEE--ECSCCTTCEEEEES--EEEE
T ss_pred             chHHHHHHHHHhh---ccCCCeEEECCCEEEE--eeccCCCeEEEEeC--cEEc
Confidence            4789999999996   4568899999999984  5 668999999873  4444

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=97.21  E-value=6.5e-05  Score=63.61  Aligned_cols=45  Identities=16%  Similarity=0.105  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeE-EeCCCeEEEEccCcEEEe
Q 043903           90 TEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSF-ILTSNFTLFLQKGAVILG  141 (146)
Q Consensus        90 T~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l-~L~SnvtL~l~~gAtL~a  141 (146)
                      +.|||+||++|.   ..++++|+||+|+|+.  + .|+++++|+++.  ++.+
T Consensus        35 ~~aiq~ai~~c~---~~~g~~v~vP~G~~l~--l~~l~~~~~l~~~g--~~~~   80 (362)
T 1czf_A           35 AAAAKAGKAKCS---TITLNNIEVPAGTTLD--LTGLTSGTKVIFEG--TTTF   80 (362)
T ss_dssp             HHHHHHHGGGCS---EEEEESCEECTTCCEE--ECSCCTTCEEEEES--EEEE
T ss_pred             HHHHHHHHHHhh---ccCCCEEEECCCEEEE--eeccCCCeEEEEeC--cEEe
Confidence            789999999986   4578899999999983  4 678899999983  4554

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=96.85  E-value=7.2e-05  Score=62.70  Aligned_cols=44  Identities=14%  Similarity=0.012  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEe
Q 043903           90 TEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILG  141 (146)
Q Consensus        90 T~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~a  141 (146)
                      +.|+|+ +++|.   ..++++|+||+|+|+  .|+|+++++|+++.  ++.+
T Consensus         8 ~~aiq~-i~aC~---~~gg~~v~vP~G~~l--~l~l~~~~~l~~~g--~~~~   51 (335)
T 1k5c_A            8 VDDAKD-IAGCS---AVTLNGFTVPAGNTL--VLNPDKGATVTMAG--DITF   51 (335)
T ss_dssp             TTGGGG-CTTCS---EEEECCEEECTTCCE--EECCCTTCEEEECS--CEEE
T ss_pred             HHHhHH-HHhcc---cCCCCEEEECCCEEE--EEEeCCCeEEEEec--cEec
Confidence            679999 88886   567899999999998  46788999999873  5554

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1

Probab=96.02  E-value=0.0021  Score=42.02  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=29.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.+|+|++.|.|.|++++..|.++..|+.+.+
T Consensus        52 ~~~~~~L~~~t~Y~~~V~A~n~~G~~s~~S~~v~v   86 (88)
T 1k85_A           52 TATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV   86 (88)
T ss_dssp             EEEECCCCSSCEEEEEEEEEETTTEECCCCCCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCCCcCCCCCCEEE
Confidence            35678999999999999999999988877777655

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.87  E-value=0.0022  Score=45.06  Aligned_cols=34  Identities=12%  Similarity=0.186  Sum_probs=29.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||+++..|.  ..+.++.+.
T Consensus        81 ~~~v~gL~p~t~Y~frV~A~N~~G~--~~S~~v~~~  114 (127)
T 2dmk_A           81 HYTVHGLQSGTRYIFIVKAINQAGS--RNSEPTRLK  114 (127)
T ss_dssp             EEEEESCCSSCEEEEEEEEEESSCE--EECCCEEEE
T ss_pred             eEEECCCCCCCEEEEEEEEEeCCCC--CCCcCeEeE
Confidence            4578999999999999999999988  367777774

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=95.50  E-value=0.0046  Score=42.85  Aligned_cols=35  Identities=9%  Similarity=-0.147  Sum_probs=27.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|+|+|.|+||+....| .+..|..+.|.
T Consensus        69 ~~~i~gL~P~T~Y~f~V~A~~~~G-~g~~S~~v~~~  103 (113)
T 1x5j_A           69 SYLVTGLKPNTLYEFSVMVTKGRR-SSTWSMTAHGT  103 (113)
T ss_dssp             EEEEESCCTTCEECCEEEEECSSC-BCCCCCCCCEE
T ss_pred             EEEeCCCCCCcEEEEEEEEecCCc-cCCCcccEEee
Confidence            356899999999999999988665 46666767664

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.73  E-value=0.012  Score=41.26  Aligned_cols=35  Identities=9%  Similarity=-0.113  Sum_probs=27.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|+|.|.|.||++...| .+..|..+.+.
T Consensus        79 ~~~v~gL~P~T~Y~f~V~A~n~~g-~g~~S~~v~~~  113 (123)
T 2edd_A           79 SYTATGLKPNTMYEFSVMVTKNRR-SSTWSMTAHAT  113 (123)
T ss_dssp             EEEEESCCTTCEEEEEEEECCSSS-CCCCCCCEEEE
T ss_pred             EEEecCCCCCCEEEEEEEEeCCCc-ccCCCCCEEEE
Confidence            457899999999999999988664 45566666663

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=94.20  E-value=0.019  Score=39.08  Aligned_cols=33  Identities=15%  Similarity=0.197  Sum_probs=26.5

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.||+....|. +..|..+.+
T Consensus        64 ~~i~~L~p~t~Y~f~V~A~~~~G~-g~~S~~~~~   96 (107)
T 1x5a_A           64 VLLTKLQPDTTYIVRVRTLTPLGP-GPFSPDHEF   96 (107)
T ss_dssp             EEEESCCSSCEEEEEEEEECSSSC-CCCCCCEEE
T ss_pred             EEECCCCCCCEEEEEEEEECCCcc-CCCCCCEEE
Confidence            678999999999999999988875 444555555

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=94.14  E-value=0.012  Score=39.12  Aligned_cols=35  Identities=9%  Similarity=-0.092  Sum_probs=27.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|+|+++...|.-...+.++.+
T Consensus        59 ~~~l~~L~p~t~Y~v~V~A~~~~G~gp~ss~p~~~   93 (97)
T 3qht_C           59 TATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSI   93 (97)
T ss_dssp             EEEECSCCTTCEEEEEEEEEEEETTEEEECSCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCccCCCCCCCEEE
Confidence            35689999999999999999988765444455544

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.97  E-value=0.023  Score=38.62  Aligned_cols=34  Identities=6%  Similarity=0.050  Sum_probs=26.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...| .+..|..+.+
T Consensus        66 ~~~v~~L~p~t~Y~frV~A~n~~G-~s~~S~~~~~   99 (110)
T 2db8_A           66 MCTVDGLHFNSTYNARVKAFNKTG-VSPYSKTLVL   99 (110)
T ss_dssp             CEEEECCCSSSCCEEEEEEECSSC-BCCCCSCEEC
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCc-CCCCCCCEEE
Confidence            357899999999999999998887 4555665555

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.73  E-value=0.027  Score=37.81  Aligned_cols=34  Identities=12%  Similarity=0.104  Sum_probs=26.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+
T Consensus        65 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~   98 (109)
T 2e7h_A           65 RAELRGLKRGASYLVQVRARSEAGY-GPFGQEHHS   98 (109)
T ss_dssp             EEEEESCCTTSCEEEEEEEECSSCB-CCCCSCEEC
T ss_pred             EEEECCCCCCCeEEEEEEEEeCCcc-CCCCCCEEE
Confidence            3568999999999999999988763 444555555

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.60  E-value=0.02  Score=37.43  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=25.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+.+.||+|++.|.|.||++...|. +..|..+.+
T Consensus        65 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~   98 (103)
T 2edy_A           65 RFTLTGLKPDTTYDIKVRAWTSKGS-GPLSPSIQS   98 (103)
T ss_dssp             CCEECSCCTTCCEEEECCEECSSCB-CCCCCCCCC
T ss_pred             eEEEcCCCCCCEEEEEEEEECCCCC-CCCCCCEEE
Confidence            3567999999999999999988765 444444443

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=93.49  E-value=0.033  Score=37.64  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=28.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|+|.|.|.|+++...|. +..|..+.+.
T Consensus        70 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~v~~~  104 (114)
T 1x4y_A           70 WHSISHLQPETSYDIKMQCFNEGGE-SEFSNVMICE  104 (114)
T ss_dssp             EEEECSCCTTCEEEEEEEEECTTCC-CCCCCCEEEE
T ss_pred             EEEcCCCCCCCEEEEEEEEEcCCcc-CCCcCCEEEE
Confidence            3678999999999999999988764 5566667664

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=93.46  E-value=0.027  Score=37.71  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=26.9

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+++.||+|++.|.|.|+++...|. +..|....+
T Consensus        66 ~~~~i~~L~p~t~Y~~rV~A~n~~G~-g~~S~~~~~  100 (105)
T 2haz_A           66 GIVTIVGLKPETTYAVRLAALNGKGL-GEISAASEF  100 (105)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTEE-CCCCCCEEE
T ss_pred             cEEEECCCCCCCEEEEEEEEEcCCcc-CCCcCCEee
Confidence            34568999999999999999988863 445555555

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.44  E-value=0.053  Score=36.68  Aligned_cols=35  Identities=9%  Similarity=0.092  Sum_probs=26.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+.
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  109 (119)
T 2ee2_A           75 SARLENLLPDTQYFIEVGACNSAGC-GPPSDMIEAF  109 (119)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSSC-CCCCCCEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCcc-CCCCCCEEEE
Confidence            3568999999999999999988863 4455555553

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=93.34  E-value=0.027  Score=45.75  Aligned_cols=29  Identities=7%  Similarity=-0.098  Sum_probs=26.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCc
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGAL   52 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~   52 (146)
                      .|++.||+|+|+|.|+|++++++|..+..
T Consensus       201 syt~~gLk~~TeYsF~V~A~d~~G~~Ss~  229 (238)
T 2w1n_A          201 SYTFKKLNRHTIYNFKIAAKYSNGEVSSK  229 (238)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTSCBCCC
T ss_pred             EEEecCCCCCCEEEEEEEEEeCCCCcccc
Confidence            36789999999999999999999998865

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.34  E-value=0.044  Score=37.34  Aligned_cols=35  Identities=14%  Similarity=0.063  Sum_probs=27.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...| .+..|..+.+.
T Consensus        80 ~~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~~~~~  114 (134)
T 2edx_A           80 SWDLVGLEKWTEYRVWVRAHTDVG-PGPESSPVLVR  114 (134)
T ss_dssp             EEEEESCCTTCEEEEEEEEEETTB-CCCCCCCEEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCC-cCCCCCCEEee
Confidence            457899999999999999999886 34455666664

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=93.21  E-value=0.038  Score=37.28  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=25.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeec--cCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGF--SGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~--~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|+|+++..  .|...  |.+++.
T Consensus        65 s~~l~~L~p~t~Y~~~V~A~~~~~~G~~~--S~p~~~   99 (103)
T 3t04_D           65 TATISGLKPGVDYTITVYAYDTFFPGYEP--NSPISI   99 (103)
T ss_dssp             EEEECSCCTTCCEEEEEEEESCCCTTCCC--SCCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCCCCCCC--CCCEEE
Confidence            4568999999999999999877  55433  566654

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=93.11  E-value=0.019  Score=39.85  Aligned_cols=30  Identities=10%  Similarity=-0.051  Sum_probs=24.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALF   53 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~   53 (146)
                      .+++.||+|++.|.|.|+++...|..+..|
T Consensus        69 ~~~v~~L~p~t~Y~frV~A~N~~G~~s~~S   98 (112)
T 1bpv_A           69 EFTVSGLTEDAAYEFRVIAKNAAGAISPPS   98 (112)
T ss_dssp             EEEECSCCSSCCEEEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEEECCCCCCCCC
Confidence            467899999999999999999887644443

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.11  E-value=0.037  Score=36.20  Aligned_cols=34  Identities=15%  Similarity=0.044  Sum_probs=26.2

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+
T Consensus        62 ~~~i~~L~p~t~Y~~~V~A~n~~G~-~~~S~~~~~   95 (106)
T 2dju_A           62 RYSIGGLSPFSEYAFRVLAVNSIGR-GPPSEAVRA   95 (106)
T ss_dssp             EEEEESCCTTCEEEEEEEEECSSCB-CCCCCCEEE
T ss_pred             EEEEeCCCCCcEEEEEEEEEeCCcc-CCCcccEEe
Confidence            3578999999999999999988764 335555555

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.03  E-value=0.031  Score=37.58  Aligned_cols=24  Identities=8%  Similarity=0.001  Sum_probs=20.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|+|+|.|+|+++...|
T Consensus        62 ~~~l~~L~p~t~Y~~~V~A~~~~~   85 (104)
T 2dkm_A           62 EVLLDGLEPGRDYEVSVQSLRGPE   85 (104)
T ss_dssp             EEEEESCCTTCCEEEEEEEECSSS
T ss_pred             EEEECCCCCCCEEEEEEEEECCCC
Confidence            457899999999999999987553

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.95  E-value=0.024  Score=37.81  Aligned_cols=34  Identities=9%  Similarity=0.005  Sum_probs=26.2

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...|. +..|..+.+
T Consensus        65 ~~~v~~L~p~t~Y~frV~A~n~~G~-s~~S~~~~~   98 (109)
T 1x5x_A           65 AYTVKNLRRSTKYKFKVIAYNSEGK-SNPSEVVEF   98 (109)
T ss_dssp             EEEEESCCSSCEEEEEEEEECSSCE-EEECCCEEE
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCCC-cCCccCEEe
Confidence            4578999999999999999988875 444554444

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.88  E-value=0.043  Score=36.55  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=27.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.+|+|++.|.|.||++...|. +..|..+.+.
T Consensus        70 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  104 (114)
T 2ede_A           70 THQIMDLNLDTMYYFRIQARNSKGV-GPLSDPILFR  104 (114)
T ss_dssp             EEEECSCCSSCEEEEEEEEECSSCB-CCCCCCEEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEeCCcC-cCCcccEEEE
Confidence            3567999999999999999988764 4455656553

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=92.78  E-value=0.21  Score=41.57  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc--CcEEEeC
Q 043903           91 EVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK--GAVILGS  142 (146)
Q Consensus        91 ~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~--gAtL~as  142 (146)
                      .-||+||+++.. ......+|+|.+|+|. ..+.+   +++++|..+.  ..+|.+.
T Consensus        16 ~TIq~AI~aap~-~~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~   70 (317)
T 1xg2_A           16 QTLAEAVAAAPD-KSKTRYVIYVKRGTYK-ENVEVASNKMNLMIVGDGMYATTITGS   70 (317)
T ss_dssp             SSHHHHHHHSCS-SCSSCEEEEECSEEEE-CCEEECTTSCSEEEEESCTTTEEEEEC
T ss_pred             ccHHHHHhhccc-CCCceEEEEEcCCEEe-eeeecCCCCCcEEEEEcCCCCcEEEec
Confidence            349999999962 1112249999999996 56777   4679998875  3455544

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.60  E-value=0.047  Score=36.46  Aligned_cols=35  Identities=11%  Similarity=0.008  Sum_probs=26.7

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+.
T Consensus        72 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  106 (116)
T 1x5g_A           72 SYTINGLKKYTEYSFRVVAYNKHGP-GVSTPDVAVR  106 (116)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSCC-CCBCCCCCEE
T ss_pred             eEEEcCCCCCCEEEEEEEEEcCCCc-CCCCCCEEEE
Confidence            4567999999999999999988764 3445555553

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.56  E-value=0.038  Score=37.00  Aligned_cols=34  Identities=12%  Similarity=0.074  Sum_probs=26.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.+|+|++.|.|.|+++...| .+..|..+.+
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~~~~  108 (119)
T 2ed7_A           75 QLTVGNLKPEAMYTFRVVAYNEWG-PGESSQPIKV  108 (119)
T ss_dssp             EEEECSCCSSSEEEECCEEEESSC-BCSCCCCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCc-cCCCcCCEEE
Confidence            457899999999999999998886 4445565655

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=92.43  E-value=0.073  Score=35.83  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=27.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.||+|.|.|.|.|++....|. +..|..+.|.
T Consensus        67 ~~l~~L~p~t~Y~v~V~A~n~~G~-G~~S~~~~~~  100 (102)
T 3n1f_C           67 HMIGHLQPETSYDIKMQCFNEGGE-SEFSNVMICE  100 (102)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE-CCCCCCEEEE
T ss_pred             EECCCCCCCCEEEEEEEEECCCcC-CCCCCCEEee
Confidence            468999999999999999887754 5556677773

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.42  E-value=0.06  Score=36.01  Aligned_cols=34  Identities=18%  Similarity=0.113  Sum_probs=26.3

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.+|+|++.|.|.||++...|. +..|..+.+.
T Consensus        78 ~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  111 (121)
T 2dlh_A           78 TTIGNLVPQKTYSVKVLAFTSIGD-GPLSSDIQVI  111 (121)
T ss_dssp             ECCBSCCSSCEEEEEEEEEESSCB-CCCCCCEEEE
T ss_pred             EEecCCCCCCEEEEEEEEEeCCcc-CCCCCCEEEE
Confidence            468999999999999999988764 4445555553

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.41  E-value=0.041  Score=36.90  Aligned_cols=34  Identities=9%  Similarity=0.085  Sum_probs=26.2

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+
T Consensus        79 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~  112 (122)
T 1va9_A           79 VYTLDNLKKFAQYGVVVQAFNRAGT-GPSSSEINA  112 (122)
T ss_dssp             EEEEESCCSSCCEEEEEEEEETTEE-CCCCCCEEC
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCCC-CCCccCEEE
Confidence            4568999999999999999988764 444555555

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=92.40  E-value=0.25  Score=41.15  Aligned_cols=50  Identities=14%  Similarity=0.208  Sum_probs=34.5

Q ss_pred             HHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe---CCCeEEEEcc--CcEEEeC
Q 043903           91 EVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL---TSNFTLFLQK--GAVILGS  142 (146)
Q Consensus        91 ~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L---~SnvtL~l~~--gAtL~as  142 (146)
                      .-||+||+++.. ......+|+|.+|+|. ..+.+   +.+++|..+.  ..+|.+.
T Consensus        20 ~TIq~AI~aap~-~~~~~~~I~I~~G~Y~-E~V~I~~~k~~Itl~G~g~~~tiI~~~   74 (319)
T 1gq8_A           20 KTVSEAVAAAPE-DSKTRYVIRIKAGVYR-ENVDVPKKKKNIMFLGDGRTSTIITAS   74 (319)
T ss_dssp             SSHHHHHHHSCS-SCSSCEEEEECSEEEE-CCEEECTTCCSEEEEESCTTTEEEEEC
T ss_pred             cCHHHHHHhccc-cCCceEEEEEcCCeEe-eeeeccCCCccEEEEEcCCCccEEEec
Confidence            349999999962 1112349999999996 56777   4678888775  3455443

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.32  E-value=0.034  Score=37.44  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=26.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...|. +..+..+.+.
T Consensus        76 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  110 (120)
T 1x5f_A           76 QVTIQNLMPATVYIFRVMAQNKHGS-GESSAPLRVE  110 (120)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSCE-EEECCCEEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEECCCcc-CCCCCCEEEE
Confidence            4568999999999999999988765 3445555553

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.27  E-value=0.037  Score=36.71  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=26.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.+|+|++.|.|.||++...|. +..|..+.+
T Consensus        67 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~  100 (111)
T 1x5l_A           67 RATVSGLKPGTRYVFQVRARTSAGC-GRFSQAMEV  100 (111)
T ss_dssp             EEEECSCCTTCEEEECEEEEETTEE-CCCCCCEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEeCCcC-CCCcccEEE
Confidence            3567999999999999999988864 444555555

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.18  E-value=0.046  Score=37.04  Aligned_cols=34  Identities=12%  Similarity=-0.140  Sum_probs=25.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.+|+|++.|.|.||++...|. +..|..+..
T Consensus        76 ~~~v~~L~p~t~Y~frV~A~n~~G~-s~~S~~~~~  109 (120)
T 2crm_A           76 EHLCDRLNPGCFYRLRVYCISDGGQ-SAVSESLLV  109 (120)
T ss_dssp             EEEECSCCTTSCEEEEEEEEETTEE-CCCCCCCCC
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCcc-CCCcccEEE
Confidence            3578999999999999999998863 434444433

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.16  E-value=0.06  Score=36.01  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=27.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...|.- ..|..+.+.
T Consensus        62 ~~~v~~L~p~t~Y~frV~A~n~~G~g-~~S~~v~~~   96 (106)
T 1x4x_A           62 SYEIKGLSPATTYYCRVQALSVVGAG-PFSEVVACV   96 (106)
T ss_dssp             EEEEESCCSSCEEEEEEEEECSSCCC-CBCCCEEEE
T ss_pred             eEEEcCCCCCCEEEEEEEEEcCCcCC-CCcCCEEEE
Confidence            45689999999999999999988754 445666663

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.16  E-value=0.04  Score=36.85  Aligned_cols=34  Identities=21%  Similarity=0.131  Sum_probs=26.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.+|+|++.|.|.||++...|. +..|..+..
T Consensus        66 ~~~v~~L~p~t~Y~frV~A~n~~G~-g~~S~~~~~   99 (110)
T 2crz_A           66 ECTVSSLLPGKTYSFRLRAANKMGF-GPFSEKCDI   99 (110)
T ss_dssp             EEEEESCCTTCEEEECCEEECSSCB-CCCCCCEEE
T ss_pred             EEEECCcCCCCEEEEEEEEEcCCcc-CCCCCcccc
Confidence            3568999999999999999998875 444554444

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=92.08  E-value=0.032  Score=37.18  Aligned_cols=35  Identities=14%  Similarity=0.065  Sum_probs=26.7

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+.
T Consensus        71 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  105 (115)
T 1x5z_A           71 SYRLQGLKPNSLYYFRLAARSPQGL-GASTAEISAR  105 (115)
T ss_dssp             EEEEECCCTTCEEEECEEEECSSCE-EEECCCEEEE
T ss_pred             EEEECCCCCCCeEEEEEEEECCCcc-cCCCcCEEEe
Confidence            4568999999999999999988763 4445555553

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=91.96  E-value=0.044  Score=36.90  Aligned_cols=34  Identities=15%  Similarity=0.028  Sum_probs=26.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.+|+|++.|.|.||++...| .+..|..+.+
T Consensus        74 ~~~v~~L~p~t~Y~frV~A~n~~G-~s~~S~~~~~  107 (118)
T 1x3d_A           74 QFKITKLSPAMGCKFRLSARNDYG-TSGFSEEVLY  107 (118)
T ss_dssp             EEEEESCCTTCEEEEECCEEESSC-BCCCCCCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEECCC-CCCCccCEEE
Confidence            357899999999999999998886 3444555544

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.93  E-value=0.055  Score=36.56  Aligned_cols=34  Identities=15%  Similarity=0.092  Sum_probs=25.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+.+.||+|++.|.|.||++...| .+..|..+.+
T Consensus        86 ~~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~~~~  119 (124)
T 2ed9_A           86 WYLFTGLEKGSQYSFQVSAMTVNG-TGPPSNWYTA  119 (124)
T ss_dssp             EEEEECCCSSCEEEECEEEECSSC-BCCCCCCEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEcCCc-cCCCCCCEEE
Confidence            346799999999999999988776 3444555555

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.82  E-value=0.042  Score=36.33  Aligned_cols=36  Identities=19%  Similarity=0.104  Sum_probs=27.3

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.+.||+|++.|.|.|+++...|. +..|..+.+.
T Consensus        61 ~~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~   96 (106)
T 2ed8_A           61 LSYKLEGLKKFTEYSLRFLAYNRYGP-GVSTDDITVV   96 (106)
T ss_dssp             SCEEEESCCTTCEEEEEEEEECSSCE-EEECCCEEEE
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCcc-CCCcCCEEEE
Confidence            34568999999999999999988763 3455666553

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=91.64  E-value=0.05  Score=36.46  Aligned_cols=26  Identities=15%  Similarity=0.068  Sum_probs=22.1

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccCC
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +.+++.||+|++.|.|+|+++..+|.
T Consensus        60 t~~~l~~L~p~t~Y~~~V~A~~~~~~   85 (101)
T 3k2m_C           60 STATISGLSPGVDYTITVYAWGEDSA   85 (101)
T ss_dssp             CEEEECSCCTTCEEEEEEEEEEECTT
T ss_pred             cEEEECCCCCCCEEEEEEEEEeCCcc
Confidence            34678999999999999999987754

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=91.60  E-value=0.048  Score=38.76  Aligned_cols=33  Identities=12%  Similarity=-0.016  Sum_probs=25.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|+|.|.|.||++...|.- ..|..+..
T Consensus        77 ~~v~gL~p~t~Y~frV~A~n~~G~s-~~S~~~~~  109 (120)
T 1wfu_A           77 HVVEGLEPRTLYKFRLKVTSPSGEY-EYSPVVSV  109 (120)
T ss_dssp             EEEESCCTTCEEEEEEEEECSSSCE-EECCCEEE
T ss_pred             EEECCCCCCCEEEEEEEEECCCCCC-CCCccEee
Confidence            5789999999999999999887643 33444433

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=91.60  E-value=0.074  Score=34.59  Aligned_cols=25  Identities=8%  Similarity=-0.040  Sum_probs=20.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|+|+++...|.
T Consensus        56 ~~~l~~L~p~t~Y~~~V~A~~~~g~   80 (94)
T 1j8k_A           56 TAELQGLRPGSEYTVSVVALHDDME   80 (94)
T ss_dssp             EEEECSCCCCSEEEEEEEECSSSCC
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCCc
Confidence            3568999999999999998876643

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=91.59  E-value=0.048  Score=36.16  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=25.7

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+
T Consensus        64 ~~~l~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~   97 (108)
T 2djs_A           64 TARIDGLRPGMVYVVQVRARTVAGY-GKFSGKMCF   97 (108)
T ss_dssp             EEEEESCCTTCEEEEEEEEEESSCE-EEECCCEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEeCCEE-CCCCCCEEE
Confidence            3568999999999999999988763 334455544

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=91.50  E-value=0.073  Score=39.61  Aligned_cols=35  Identities=9%  Similarity=0.026  Sum_probs=26.8

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+++.||+|+|+|.|+|+++...|... .|.++..
T Consensus       157 t~~~l~gL~p~t~Y~~~V~A~~~~G~g~-~S~~v~~  191 (195)
T 2qbw_A          157 STATISGLKPGVDYTITVYAYSDYYGSH-HYSPISI  191 (195)
T ss_dssp             SEEEECSCCTTCEEEEEEEEESSTTSSC-BCCCEEE
T ss_pred             CEEEeCCCCCCCEEEEEEEEEeCCccCC-CCCCEEE
Confidence            3467899999999999999998886543 3554443

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=91.45  E-value=0.044  Score=36.60  Aligned_cols=25  Identities=4%  Similarity=-0.064  Sum_probs=20.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.|+++...|.
T Consensus        56 ~~~i~~L~p~t~Y~~~V~A~n~~g~   80 (100)
T 3b83_A           56 SLTLTNLEPNTTYEIRIVARNGQQY   80 (100)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEE
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCCC
Confidence            4568999999999999999876643

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=91.25  E-value=0.066  Score=36.87  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=26.7

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+++.||+|++.|.|.|+++...|. +..|..+.+
T Consensus        67 ~~~~i~~L~p~t~Y~~rV~A~n~~G~-g~~S~~~~~  101 (122)
T 2e3v_A           67 GIVTIVGLKPETTYAVRLAALNGKGL-GEISAASEF  101 (122)
T ss_dssp             TEEEECSCCTTCEEEEEEEEEETTEE-CCCCCCEEE
T ss_pred             ceEEeCCCCCCCEEEEEEEEEeCCcc-CCCcccccc
Confidence            34568999999999999999988864 444555545

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.22  E-value=0.055  Score=36.34  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.||++...|.
T Consensus        74 ~~~i~~L~p~t~Y~~~V~A~n~~G~   98 (118)
T 2yrz_A           74 SVVVEDLLPNHSYVFRVRAQSQEGW   98 (118)
T ss_dssp             EEEEESCCTTCEEEEEEEEEESSCE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCcC
Confidence            3568999999999999999988764

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=91.21  E-value=0.048  Score=36.49  Aligned_cols=24  Identities=13%  Similarity=-0.002  Sum_probs=20.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|+|+++...|
T Consensus        56 ~~~l~gL~P~t~Y~~~V~A~~~~g   79 (98)
T 3tes_A           56 SYDLTGLKPGTEYTVSIYGVKGGH   79 (98)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTE
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCc
Confidence            467899999999999999987664

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.17  E-value=0.076  Score=36.39  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=28.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||.|++.|.|.|+++...|. +..|..+.+.
T Consensus        80 ~~~l~~L~p~t~Y~~~V~A~n~~G~-Gp~S~~~~~~  114 (124)
T 2dbj_A           80 RARISVQVHNATCTVRIAAVTRGGV-GPFSDPVKIF  114 (124)
T ss_dssp             CEEEECCCSSSEEEECEEEEESSCB-CCCCCCEEEE
T ss_pred             eEEecCCCCCCEEEEEEEEECCCcc-CCCCCCEEEE
Confidence            4568999999999999999988875 5556666663

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=91.16  E-value=0.055  Score=36.50  Aligned_cols=35  Identities=17%  Similarity=0.040  Sum_probs=26.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+.+.||+|++.|.|.|+++...|. +..|..+.+.
T Consensus        81 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  115 (125)
T 1uen_A           81 HGMLPGLEPFSHYTLNVRVVNGKGE-GPASPDRVFN  115 (125)
T ss_dssp             EEEEESCCSSCEEEEEEEEEESSCE-EEECCCEEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEecCCCC-CCCCCCEEEE
Confidence            4568999999999999999987764 3445556553

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=91.07  E-value=0.36  Score=41.21  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             CeeEeeeecc--CCCC-cchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEE-------EeeEEe-CCC-----eEEEEcc
Q 043903           72 KVVMSIKDFG--VGDG-TTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWL-------TGSFIL-TSN-----FTLFLQK  135 (146)
Q Consensus        72 ~~~~nV~dfG--~gDG-~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl-------tg~l~L-~Sn-----vtL~l~~  135 (146)
                      +..+-|..-|  .++| ....--.||+|++.+.     .|.+|+|.+|+|.       .+.|.+ +|+     ++|.-..
T Consensus        14 ~~~~yVsp~Gsd~~~G~t~~~P~tiq~Ai~~a~-----pGdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~   88 (400)
T 1ru4_A           14 KRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVN-----PGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAAN   88 (400)
T ss_dssp             SCEEEECTTCCTTCCSSSTTSCBCHHHHHHHCC-----TTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGG
T ss_pred             ccEEEEcCCCCCCCCCccccCCccHHHHHhhCC-----CCCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEec
Confidence            3456665556  5566 2222126999999885     6789999999998       467777 344     8887765


Q ss_pred             --CcEEE
Q 043903          136 --GAVIL  140 (146)
Q Consensus       136 --gAtL~  140 (146)
                        .++|.
T Consensus        89 g~~~vI~   95 (400)
T 1ru4_A           89 CGRAVFD   95 (400)
T ss_dssp             GCCEEEE
T ss_pred             CCCCEEe
Confidence              34554

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=91.03  E-value=0.33  Score=42.87  Aligned_cols=48  Identities=17%  Similarity=0.286  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe------CCCeEEEEcc--CcEEEe
Q 043903           89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL------TSNFTLFLQK--GAVILG  141 (146)
Q Consensus        89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L------~SnvtL~l~~--gAtL~a  141 (146)
                      +.+.||+|++.|.     .|.+|+|++|+|.-+.+.+      ...++|.-+.  .++|.+
T Consensus        30 ~~~~Lq~Ai~~A~-----pGDtI~L~~GtY~~~~i~i~~sGt~~~pItl~~~~~~~~vi~G   85 (506)
T 1dbg_A           30 SNETLYQVVKEVK-----PGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTG   85 (506)
T ss_dssp             SHHHHHHHHHHCC-----TTCEEEECSEEEETCEEEECCCCBTTBCEEEEESSTTSEEEEE
T ss_pred             CHHHHHHHHHhCC-----CCCEEEECCCEEecceEEEecCCcCCCCEEEECCCCCccEEeC
Confidence            3567999999885     7899999999998557777      3457776652  345544

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=90.99  E-value=0.079  Score=35.96  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=21.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.||++...|.
T Consensus        77 ~~~v~~L~p~t~Y~frV~A~n~~G~  101 (121)
T 1x4z_A           77 SVEITGLEKGISYKFRVRALNMLGE  101 (121)
T ss_dssp             EEEEESCCTTCEEEEEEEEEETTEE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCCc
Confidence            4578999999999999999998764

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}

Probab=90.94  E-value=0.11  Score=35.83  Aligned_cols=20  Identities=15%  Similarity=0.011  Sum_probs=17.9

Q ss_pred             HHHHhCCCCCCcceeEEEEe
Q 043903           24 LIKILSLQITKKPVLSLRRV   43 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v   43 (146)
                      .+++.||+|.|.|.|+||++
T Consensus        60 ~~~i~gL~PgT~Y~~~V~A~   79 (104)
T 2dle_A           60 RAVIPGLRSSTFYNITVCPV   79 (104)
T ss_dssp             EEECCSCCSSCEEEEEEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEE
Confidence            35689999999999999988

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=90.83  E-value=0.056  Score=36.38  Aligned_cols=26  Identities=15%  Similarity=-0.087  Sum_probs=21.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|++.|.|+|+++...|..
T Consensus        57 ~~~l~~L~p~t~Y~~~V~A~~~~g~s   82 (104)
T 2rb8_A           57 QYSIGNLKPDTEYEVSLISRRGDMSS   82 (104)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEEC
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            35789999999999999998876543

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=90.81  E-value=0.067  Score=35.52  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=26.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.+|+|++.|.|.||++...|. +..|..+.+.
T Consensus        64 ~~~l~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~   98 (108)
T 2dm4_A           64 FTEIKNLLVNTLYTVRVAAVTSRGI-GNWSDSKSIT   98 (108)
T ss_dssp             EEEECSCCSSCEEEEEEEEEESSCE-EEECCCEEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEECCCce-eCCCCCEEEE
Confidence            4568999999999999999987753 3445556553

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=90.72  E-value=0.065  Score=36.01  Aligned_cols=25  Identities=16%  Similarity=0.118  Sum_probs=21.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.|+++...|.
T Consensus        77 ~~~v~~L~p~t~Y~frV~A~n~~G~  101 (121)
T 1wf5_A           77 SVTVKGLVPARSYQFRLCAVNDVGK  101 (121)
T ss_dssp             EEEEESCCTTCEEEEEEEEEESSCE
T ss_pred             EEEECCcCCCCEEEEEEEEEcCCcc
Confidence            3578999999999999999988764

>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5}

Probab=90.64  E-value=0.24  Score=42.65  Aligned_cols=59  Identities=24%  Similarity=0.374  Sum_probs=45.9

Q ss_pred             eeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEE
Q 043903           73 VVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVIL  140 (146)
Q Consensus        73 ~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~  140 (146)
                      +++.+++|| .+|-.+||+++|.+-+.        .-..|.||.|.|.+.-+.+ +.-.|+...+++|.
T Consensus        63 rvls~k~fga~~~~~~d~~~~~~~sl~--------s~~~v~i~~gvf~ss~i~~-~~c~l~g~g~g~~~  122 (542)
T 2x3h_A           63 RVLTSKPFGAAGDATTDDTEVIAASLN--------SQKAVTISDGVFSSSGINS-NYCNLDGRGSGVLS  122 (542)
T ss_dssp             HBCBSSCTTCCCBSSSCCHHHHHHHHT--------SSSCEECCSEEEEECCEEE-SCCEEECTTTEEEE
T ss_pred             eeeecccccccCCcccCcHHHHHhhhc--------ccccEeccccccccccccc-ccccccccCCceee
Confidence            467899999 99999999999988765        3457999999999877776 34456666666654

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=90.57  E-value=0.063  Score=35.93  Aligned_cols=25  Identities=12%  Similarity=0.193  Sum_probs=22.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.+|+|++.|.|.||++...|.
T Consensus        67 ~~~v~~L~p~t~Y~frV~A~n~~G~   91 (111)
T 1x5y_A           67 GFTVKDLPTGARILFRVVGVNIAGR   91 (111)
T ss_dssp             EEEEECCCTTCCEEEEEEEEETTEE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCcC
Confidence            4578999999999999999998765

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.49  E-value=0.061  Score=35.85  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.||++...|.
T Consensus        66 ~~~v~~L~p~t~Y~frV~A~n~~G~   90 (110)
T 2yuw_A           66 KFTITGLPTDAKIFVRVKAVNAAGA   90 (110)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCcC
Confidence            4578999999999999999998765

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=90.41  E-value=0.12  Score=37.63  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...|. +..|..+.+
T Consensus       175 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~  208 (214)
T 2ibg_A          175 SFKIAPLETATMYEFKLQSFSAASA-SEFSALKQG  208 (214)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSSCB-CCCCCCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCcc-CCCcceEee
Confidence            3578999999999999999988863 555666655

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=90.31  E-value=0.064  Score=35.83  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.+|+|++.|.|.||++...|.
T Consensus        73 ~~~i~~L~p~t~Y~frV~A~n~~G~   97 (117)
T 1uem_A           73 LYTVRGLRPNTIYLFMVRAINPQGL   97 (117)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEE
T ss_pred             EEEECCCCCCCEEEEEEEEECCCcc
Confidence            3568999999999999999987764

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.16  E-value=0.062  Score=36.04  Aligned_cols=27  Identities=15%  Similarity=0.166  Sum_probs=22.2

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      +.+++.||+|+|.|.|+|+++...|.-
T Consensus        61 ~~~~l~~L~p~t~Y~~~V~A~~~~g~g   87 (105)
T 2ekj_A           61 SHVTLPDLQAATKYRVLVSAIYAAGRS   87 (105)
T ss_dssp             SEEEECSCCSSCCCBCBBCBBCSSCBC
T ss_pred             CEEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            345789999999999999988877643

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.05  E-value=0.078  Score=36.25  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|++.|.|.|+++...|.-
T Consensus        72 ~~~l~~L~p~t~Y~~~V~A~n~~G~g   97 (116)
T 2edb_A           72 YYSIERLESSSHYVISLKAFNNAGEG   97 (116)
T ss_dssp             EEEECSCCSSSBEEEEEEEEETTEEC
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            35689999999999999999887643

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=89.98  E-value=0.068  Score=35.12  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=21.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.+|+|++.|.|.|+++...|.
T Consensus        63 ~~~i~~L~p~t~Y~~~V~A~n~~G~   87 (107)
T 2dn7_A           63 HFTVTGLHKGTTYIFRLAAKNRAGL   87 (107)
T ss_dssp             EEEEECCCTTCEEEEEEEEEETTEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCcc
Confidence            3568999999999999999887653

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=89.85  E-value=0.077  Score=34.78  Aligned_cols=24  Identities=17%  Similarity=0.055  Sum_probs=20.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|.|+++...|
T Consensus        56 ~~~i~~L~p~t~Y~~~V~A~n~~G   79 (98)
T 3teu_A           56 SVTITGLTPGVEYVVSVYALKDNQ   79 (98)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTE
T ss_pred             EEEecCCCCCCEEEEEEEEEeCCC
Confidence            456899999999999999988775

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=89.81  E-value=0.04  Score=38.61  Aligned_cols=25  Identities=12%  Similarity=-0.073  Sum_probs=21.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|+|+++...|.
T Consensus        83 ~~~l~gL~P~t~Y~~~V~A~~~~G~  107 (121)
T 2ocf_D           83 TATISGLKPGVDYTITVYAVTGLRL  107 (121)
T ss_dssp             EEEECCCCTTCEEEEEEEEECCHHH
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCCc
Confidence            4578999999999999999887764

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=89.54  E-value=0.089  Score=35.41  Aligned_cols=25  Identities=8%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.+|+|++.|.|.||++...|.
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G~   99 (119)
T 1wfn_A           75 EYRVTGLTALTTYTIEVAAMTSKGQ   99 (119)
T ss_dssp             EEEEESCCTTCEEEEEEEEECSSCE
T ss_pred             EEEEcCCCCCCEEEEEEEEEcCCcc
Confidence            3567999999999999999987763

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=89.53  E-value=0.11  Score=37.97  Aligned_cols=35  Identities=11%  Similarity=0.137  Sum_probs=28.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|+|+++...| .+..|.++.+.
T Consensus       167 ~~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~v~~~  201 (211)
T 3p4l_A          167 THQIQELTLDTPYYFKIQARNSKG-MGPMSEAVQFR  201 (211)
T ss_dssp             EEEECCCCTTCEEEEEEEEEETTE-ECCCCCCEEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEcCCc-cCCCCCCEEcc
Confidence            356899999999999999998886 45566766663

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=89.46  E-value=0.13  Score=35.67  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|++.|.|.|+++...|.-
T Consensus        82 ~~~i~~L~p~t~Y~~~V~A~n~~G~g  107 (126)
T 1x5i_A           82 YYTIENLDPSSHYVITLKAFNNVGEG  107 (126)
T ss_dssp             EEEECSCCSSCEECCEEEEECSSCBC
T ss_pred             EEEEeCCCCCCEEEEEEEEEeCCccC
Confidence            35689999999999999999887654

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=89.39  E-value=0.095  Score=35.71  Aligned_cols=34  Identities=9%  Similarity=0.004  Sum_probs=25.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..+..+.+
T Consensus        86 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~  119 (130)
T 1wfo_A           86 QYTATGLKPESVYLFRITAQTRKGW-GEAAEALVV  119 (130)
T ss_dssp             EEEEESCCSSSEEEEEEEEECSSCE-EEEEEEEEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEeCCcC-CCCcccEEE
Confidence            4568999999999999999987764 333443334

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=89.17  E-value=0.12  Score=34.71  Aligned_cols=25  Identities=12%  Similarity=-0.065  Sum_probs=20.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|+|+++...|.
T Consensus        60 s~~l~~L~p~t~Y~~~V~A~~~~g~   84 (105)
T 2cum_A           60 SHQLLGLFPSTSYNARLQAMWGQSL   84 (105)
T ss_dssp             EEEECSCCTTCEEEEEEEEEBTTBC
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCcc
Confidence            4568999999999999999876543

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=89.09  E-value=0.1  Score=35.82  Aligned_cols=26  Identities=15%  Similarity=0.232  Sum_probs=22.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|.+.|.|.|+++...|.-
T Consensus        80 ~~~v~~L~p~t~Y~frV~A~N~~G~s  105 (124)
T 1wis_A           80 SMEVPDLNPFTCYSFRMRQVNIVGTS  105 (124)
T ss_dssp             EEEECSCCTTSEECCCCEEECSSCBC
T ss_pred             EEEeCCCCCCCEEEEEEEEEECCccC
Confidence            46789999999999999999887654

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=88.86  E-value=0.099  Score=36.16  Aligned_cols=24  Identities=8%  Similarity=-0.004  Sum_probs=21.3

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|.+.|.|.|+++...|.
T Consensus        73 ~~v~~L~p~t~Y~FRV~A~N~~G~   96 (115)
T 2ic2_A           73 ASVTDLKPQHTYRFRILAVYSNND   96 (115)
T ss_dssp             EEECSCCSSEEEEEEEEEEETTSC
T ss_pred             EEeCCCCCCCEEEEEEEEEeCCCC
Confidence            468999999999999999988864

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum}

Probab=88.82  E-value=0.16  Score=34.97  Aligned_cols=34  Identities=15%  Similarity=-0.026  Sum_probs=29.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .|+..+|++++.|.|.|++++ .|.+|..|+.++.
T Consensus        58 sy~d~~l~~g~~Y~Y~V~Avn-~~geS~~S~~vs~   91 (103)
T 3mpc_A           58 NYTDTGVATGTKYYYVVSAVS-NGVETLNSAEAIL   91 (103)
T ss_dssp             EEEETTCCTTCCCEEEEEEEE-TTEECCCCCCEEC
T ss_pred             EEEECCCCCCCEEEEEEEEEe-CcCCcCCCccEEE
Confidence            456689999999999999999 6788888887766

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=88.43  E-value=0.095  Score=36.34  Aligned_cols=24  Identities=13%  Similarity=-0.025  Sum_probs=21.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|+|+++...|
T Consensus        58 s~~l~gL~P~T~Y~v~V~A~~~~G   81 (114)
T 3qwq_B           58 TATISGLKPGVDYTITVYAVTDHK   81 (114)
T ss_dssp             EEEECSCCTTCEEEEEEEEEEEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEECCc
Confidence            367899999999999999999888

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=88.36  E-value=0.11  Score=35.22  Aligned_cols=24  Identities=8%  Similarity=0.018  Sum_probs=20.2

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|+|+|.|+|+++...|
T Consensus        60 ~~~l~~L~P~t~Y~~~V~A~~~~~   83 (115)
T 2cuh_A           60 DYPLHDLVLHTNYTATVRGLRGPN   83 (115)
T ss_dssp             EEEECSCCSSSEEEEEEEEEETTE
T ss_pred             EEEEeCCCCCCEEEEEEEEEeCCC
Confidence            456899999999999999887553

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=88.34  E-value=0.088  Score=35.89  Aligned_cols=35  Identities=11%  Similarity=0.047  Sum_probs=26.2

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+.
T Consensus        78 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  112 (132)
T 1x5h_A           78 SQLIEGLDRGTEYNFRVAALTINGT-GPATDWLSAE  112 (132)
T ss_dssp             EEEEECCCSSCEEEEECEEEETTEE-EEECCCEEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCcc-CCCCcCEEeE
Confidence            3567999999999999999987753 3345555553

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=87.97  E-value=0.3  Score=34.39  Aligned_cols=34  Identities=12%  Similarity=-0.065  Sum_probs=26.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.||+|.|.|.|.|++....|. ++.|+++.|.
T Consensus        77 ~~l~~L~p~T~Y~~~V~A~n~~G~-Gp~S~~v~~~  110 (120)
T 1ujt_A           77 AVLVNLKKGVTYEIKVRPYFNEFQ-GMDSESKTVR  110 (120)
T ss_dssp             EEEESCCSSEEEEEEEEEESSSCC-CCCCCCEEEE
T ss_pred             EEECCCCCCCEEEEEEEEECCCcc-CCCCCCEEEE
Confidence            568999999999999999877643 4556667674

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=87.81  E-value=0.47  Score=34.48  Aligned_cols=34  Identities=9%  Similarity=-0.143  Sum_probs=24.7

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|.+.|.|.|+++...|. +..|..+.+
T Consensus        65 ~~~i~~L~p~t~Y~~~V~A~n~~g~-~~~S~~~~~   98 (211)
T 3p4l_A           65 SYLVTGLKPNTLYEFSVMVTKGRRS-STWSMTAHG   98 (211)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEE-CCCCCCEEE
T ss_pred             EEEecCcCCCCEEEEEEEEEcCCCC-CccceeEee
Confidence            3567999999999999999887753 333444444

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=87.22  E-value=0.16  Score=35.38  Aligned_cols=23  Identities=13%  Similarity=-0.060  Sum_probs=19.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeecc
Q 043903           24 LIKILSLQITKKPVLSLRRVGFS   46 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~   46 (146)
                      .+++.||+|.|+|.|+|+++...
T Consensus        71 ~~~l~gL~PgT~Y~~~V~A~~~~   93 (112)
T 2cui_A           71 SAVLRDLRSGTLYSLTLYGLRGP   93 (112)
T ss_dssp             EEEECSCCTTCEEEEEEEEECSS
T ss_pred             EEEeCCCCCCCEEEEEEEEEECC
Confidence            46789999999999999988644

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.19  E-value=0.16  Score=34.99  Aligned_cols=26  Identities=8%  Similarity=-0.021  Sum_probs=21.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+.+.||+|.|+|.|.|+++...|.-
T Consensus        61 ~~~l~~L~p~T~Y~v~V~A~~~~g~s   86 (108)
T 2ee3_A           61 SAMLGPLSSSTTYTVRVTCLYPGGGS   86 (108)
T ss_dssp             EEEECSCCSSCEEEEEEEEECTTSCE
T ss_pred             EEEcCCCCCCCEEEEEEEEEeCCCcC
Confidence            35678999999999999998877543

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=87.16  E-value=0.16  Score=38.64  Aligned_cols=33  Identities=15%  Similarity=-0.033  Sum_probs=26.7

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...|  +..|..+.+
T Consensus       254 ~~~~~~L~p~t~Y~~~V~A~n~~G--g~~s~~~~~  286 (290)
T 3l5i_A          254 EYTLSSLTSDTLYMVRMAAYTDEG--GKDGPEFTF  286 (290)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTE--EEECCCEEE
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCC--CCCCCceEe
Confidence            356899999999999999999888  455665555

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=86.50  E-value=0.46  Score=35.43  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=24.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|.+.|.|+|+++...|. +..+..+.+
T Consensus        59 ~~~i~~L~p~t~Y~~~V~A~n~~G~-g~~s~~~~~   92 (234)
T 3f7q_A           59 SVELTNLYPYCDYEMKVCAYGAQGE-GPYSSLVSC   92 (234)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEE-CCCCCCEEE
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCCc-CCCCCeEEE
Confidence            3567899999999999999987763 333444444

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=86.50  E-value=0.21  Score=36.46  Aligned_cols=34  Identities=12%  Similarity=-0.088  Sum_probs=24.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      ..++.||+|.|.|.|.||++...|. +..|.++.+
T Consensus        83 s~~v~~L~P~T~Y~~rV~A~n~~G~-G~~S~~~~f  116 (137)
T 1wk0_A           83 NITLNDLKPAMDYHAKVQAEYNSIK-GTPSEAEIF  116 (137)
T ss_dssp             EEEECSCCTTCEECEEEEEEETTEE-CCCCCCCCE
T ss_pred             EEEEcCCCCCCEEEEEEEEEeCCCc-CCCCCCEEE
Confidence            3468999999999999999887753 223444444

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=86.19  E-value=0.16  Score=37.04  Aligned_cols=33  Identities=9%  Similarity=-0.048  Sum_probs=24.9

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.|+++...|. +..|....+
T Consensus       167 ~~i~~L~p~t~Y~~~V~A~n~~G~-s~~S~~~~~  199 (209)
T 2vkw_A          167 VMLKSLDWNAEYEVYVVAENQQGK-SKAAHFVFR  199 (209)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE-CCCEEEEEE
T ss_pred             EEecCCCCCCEEEEEEEEEeCCcc-CCcchhhhh
Confidence            568999999999999999988864 434443333

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=85.92  E-value=0.11  Score=35.26  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=21.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.+|+|++.|.|.|+++...|.-
T Consensus        75 ~~~v~~L~p~t~Y~frV~A~n~~G~s  100 (120)
T 2yux_A           75 SATITELVIGNEYYFRVFSENMCGLS  100 (120)
T ss_dssp             CCEECCCCSSEEEEEEECCCSSSCSC
T ss_pred             EEEECCCCCCCEEEEEEEEeeCCcCC
Confidence            45689999999999999988776543

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=85.91  E-value=0.31  Score=35.53  Aligned_cols=35  Identities=14%  Similarity=0.081  Sum_probs=25.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC--CCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA--EGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~--~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||+....|.  -|..|..+.+
T Consensus       165 ~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~  201 (215)
T 1bqu_A          165 SFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG  201 (215)
T ss_dssp             EEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEE
T ss_pred             eEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccc
Confidence            3568999999999999999987653  2334444444

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=85.39  E-value=0.24  Score=35.88  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=22.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|++.|.|+|+++...|..
T Consensus       166 ~~~i~~L~p~t~Y~~~V~A~~~~G~~  191 (201)
T 2ha1_A          166 SVNIPDLLPGRKYIVNVYQISEDGEQ  191 (201)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTSCE
T ss_pred             EEEeCCCCCCCEEEEEEEEEcCCCCc
Confidence            35679999999999999999877654

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=85.37  E-value=0.34  Score=32.92  Aligned_cols=24  Identities=17%  Similarity=0.061  Sum_probs=20.7

Q ss_pred             HHhCCCCCCcceeEEEEeeccCCC
Q 043903           26 KILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        26 ~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      ++.+|+|++.|.|.|+++...|.-
T Consensus        77 ~i~~L~p~t~Y~frV~A~n~~G~s  100 (127)
T 1uey_A           77 AQLNLSPYVNYSFRVMAVNSIGKS  100 (127)
T ss_dssp             EEECCCTTCEECCEEEEEESSCBC
T ss_pred             EEecCCCCCEEEEEEEEEeCCccC
Confidence            467999999999999999887653

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=85.37  E-value=0.8  Score=33.17  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=25.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...|. +..+..+.+
T Consensus        69 ~~~i~~L~p~t~Y~~~V~A~n~~G~-~~~s~~~~~  102 (209)
T 2vkw_A           69 IVTIVGLKPETTYAVRLAALNGKGL-GEISAASEF  102 (209)
T ss_dssp             EEEECCCCTTCEEEEEEEEEETTEE-CCCCCCEEE
T ss_pred             eEEeCCCCCCCeEEEEEEEEcCCcc-cCCcccccc
Confidence            4678999999999999999988764 333443433

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=85.25  E-value=0.43  Score=34.89  Aligned_cols=33  Identities=12%  Similarity=-0.039  Sum_probs=23.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC--CCCCcCCcce
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG--AEGALFNPAT   57 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g--~~~~~~~~~~   57 (146)
                      +.+.+|+|++.|.|.||+....|  .-|.-|..+.
T Consensus       174 ~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~  208 (215)
T 1cd9_B          174 FELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQ  208 (215)
T ss_dssp             EEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEE
T ss_pred             EEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccc
Confidence            46799999999999999988743  3343344443

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=85.18  E-value=1.4  Score=37.37  Aligned_cols=50  Identities=16%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe-CCCeEEEEccC--cEEEe
Q 043903           89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL-TSNFTLFLQKG--AVILG  141 (146)
Q Consensus        89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L-~SnvtL~l~~g--AtL~a  141 (146)
                      |=.-||+||+++..  .....+|+|.+|+|. ..+.+ +++++|..+..  .+|.+
T Consensus        43 ~f~TIq~Ai~aa~~--~~~~~~I~I~~G~Y~-E~v~I~k~~itl~G~g~~~TiIt~   95 (364)
T 3uw0_A           43 EFSSINAALKSAPK--DDTPFIIFLKNGVYT-ERLEVARSHVTLKGENRDGTVIGA   95 (364)
T ss_dssp             -CCCHHHHHHHSCS--SSSCEEEEECSEEEC-CCEEECSTTEEEEESCTTTEEEEE
T ss_pred             CcccHHHHHhhccc--CCCcEEEEEeCCEEE-EEEEEcCCeEEEEecCCCCeEEEc
Confidence            34569999999972  112359999999997 34555 56799988742  34544

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=84.91  E-value=0.24  Score=37.70  Aligned_cols=28  Identities=14%  Similarity=0.046  Sum_probs=21.1

Q ss_pred             HHHHHHHhCCCCCCcceeEEEEeeccCC
Q 043903           21 IVTLIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        21 ~~~~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      -.+.+++.+|+|.+.|.|.|+++...|.
T Consensus        44 ~~t~~~~~~L~p~t~Y~frV~A~n~~G~   71 (232)
T 4go6_B           44 DYNQLKKQELQPGTAYKFRVAGINACGR   71 (232)
T ss_dssp             -----CEEECCTTCEEEEEEEEEETTEE
T ss_pred             CccEEEeCCCCCCCEEEEEEEEEeCCCc
Confidence            3467889999999999999999988764

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=84.67  E-value=1.3  Score=37.05  Aligned_cols=49  Identities=18%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe-CCCeEEEEcc--CcEEEeC
Q 043903           91 EVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL-TSNFTLFLQK--GAVILGS  142 (146)
Q Consensus        91 ~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L-~SnvtL~l~~--gAtL~as  142 (146)
                      .-||+||+++..  .....+|+|.+|+|. ..+.+ +++++|..+.  ..+|.+.
T Consensus        19 ~TIq~Ai~aap~--~~~~~~I~I~~G~Y~-E~V~I~k~~Itl~G~g~~~tiI~~~   70 (342)
T 2nsp_A           19 KTIADAIASAPA--GSTPFVILIKNGVYN-ERLTITRNNLHLKGESRNGAVIAAA   70 (342)
T ss_dssp             SSHHHHHHTSCS--SSSCEEEEECSEEEE-CCEEECSTTEEEEESCTTTEEEEEC
T ss_pred             chHHHHHHhccc--CCCcEEEEEeCCEEE-EEEEEecCeEEEEecCCCCeEEEec
Confidence            349999999962  112359999999996 45666 5679998875  3444443

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=84.60  E-value=0.28  Score=34.46  Aligned_cols=27  Identities=19%  Similarity=0.036  Sum_probs=22.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEG   50 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~   50 (146)
                      .+++.||+|++.|.|.|++++..|...
T Consensus        65 ~~~l~~L~p~t~Y~frV~A~N~~G~s~   91 (114)
T 2kbg_A           65 HIILEHLQWTMGYEVQITAANRLGYSE   91 (114)
T ss_dssp             CEEECCCCTTCCEEEEEEEECTTSCEE
T ss_pred             EEEEcCCCCCCEEEEEEEEEeCCcCcC
Confidence            456899999999999998888776543

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=83.94  E-value=0.37  Score=34.92  Aligned_cols=35  Identities=11%  Similarity=0.016  Sum_probs=25.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...|.-...+..+..
T Consensus       165 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~  199 (205)
T 1cfb_A          165 NIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVG  199 (205)
T ss_dssp             EEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEE
T ss_pred             EEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEE
Confidence            45679999999999999999888643323444443

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=83.78  E-value=0.26  Score=36.13  Aligned_cols=24  Identities=17%  Similarity=0.038  Sum_probs=20.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|+|+++...|
T Consensus       169 ~~~i~~L~p~t~Y~~~V~A~~~~g  192 (203)
T 2gee_A          169 AVVLTNLLPGTEYVVSVSSVYEQH  192 (203)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTE
T ss_pred             EEEECCCCCCCEEEEEEEEecCCC
Confidence            356799999999999999988654

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=82.76  E-value=0.58  Score=34.24  Aligned_cols=35  Identities=26%  Similarity=0.106  Sum_probs=25.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+.+.+|+|.+.|.|.||+....|.-+.-|.++.+
T Consensus       166 ~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~  200 (210)
T 3n06_B          166 EFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFI  200 (210)
T ss_dssp             EEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEE
T ss_pred             EEEEeccCCCCEEEEEEEEecCCCcccCCCCceeE
Confidence            35679999999999999998866644444444433

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=81.23  E-value=0.36  Score=34.03  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=21.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.+|+|++.|.|.|+++...|.
T Consensus       160 ~~~~~L~p~t~Y~~~V~A~n~~G~  183 (197)
T 3lpw_A          160 ATITGLIQGEEYSFRVSAQNEKGI  183 (197)
T ss_dssp             EEECCCCTTCEEEEEEEEEETTEE
T ss_pred             EEeCCcCCCCEEEEEEEEEeCCcc
Confidence            568999999999999999987763

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=81.03  E-value=0.38  Score=34.81  Aligned_cols=26  Identities=15%  Similarity=-0.058  Sum_probs=22.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|++.|.|+|+++...|..
T Consensus        57 ~~~i~~L~p~t~Y~~~V~a~n~~G~~   82 (201)
T 2ha1_A           57 SYTIKGLKPGVVYEGQLISIQQYGHQ   82 (201)
T ss_dssp             EEEECSCCTTEEEEEEEEEECTTSCE
T ss_pred             EEEecCCCCCCEEEEEEEEEeccccc
Confidence            35689999999999999999877654

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=80.52  E-value=0.4  Score=32.19  Aligned_cols=22  Identities=9%  Similarity=-0.022  Sum_probs=18.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeec
Q 043903           24 LIKILSLQITKKPVLSLRRVGF   45 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~   45 (146)
                      .+.+.+|+|++.|.|.||+...
T Consensus        68 ~~~l~~L~p~t~Y~~~VRa~~~   89 (109)
T 1uc6_A           68 AHTITDAYAGKEYIIQVAAKDN   89 (109)
T ss_dssp             EEEETTCCSSSCEEEEEECCBS
T ss_pred             EEEEeCCCCCCEEEEEEEEEeC
Confidence            3467899999999999998763

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=80.46  E-value=0.75  Score=35.99  Aligned_cols=27  Identities=15%  Similarity=0.043  Sum_probs=22.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEG   50 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~   50 (146)
                      .+++.||+|++.|.|+|+++...|...
T Consensus       330 ~~~~~~L~p~t~Y~~~V~A~~~~G~g~  356 (368)
T 1fnf_A          330 TATISGLKPGVDYTITVYAVTGRGDSP  356 (368)
T ss_dssp             EEEECSCCTTCCEEEEEEEECCCSSSC
T ss_pred             EEEecCCCCCCEEEEEEEEeCCCCcCc
Confidence            356899999999999999998887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1bhea_	376	b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor	2e-11
d1rmga_	422	b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a	1e-05

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score = 58.3 bits (140), Expect = 2e-11
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 82  VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEG---LWLTGSFILTSNFTLFLQKGAV 138
           +   +++ T   +KA+        +G   + +  G   ++L+G   L S  +L + KG  
Sbjct: 18  LKADSSTATSTIQKALNNCD----QGKA-VRLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 139 ILGSQELK 146
           +      K
Sbjct: 73  LRAVNNAK 80

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 18/99 (18%)

Query: 46  SGAEGALFNPATCVAGLPGDQYLPKRKVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFG 104
           SG+ G L + +T                  +I  +G V D +T        A        
Sbjct: 3   SGSVGPLTSAST-----------KGATKTCNILSYGAVADNSTDVGPAITSAWAAC---- 47

Query: 105 DKGGTQLNVPEGL-WLTGSFILTSNFTLFLQKGAVILGS 142
            K G  + +P G   L     LT      +Q   +I  +
Sbjct: 48  -KSGGLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYRT 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	99.54
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	99.51
d1h80a_	464	iota-carrageenase {Alteromonas sp., atcc 43554 [Ta	98.7
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	98.48
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	98.11
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	97.87
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	96.97
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	96.6
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	96.25
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	95.23
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	94.67
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	94.48
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	94.26
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	94.22
d2crma1	107	Fibronectin type-III domain containing protein 3a,	94.18
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	94.15
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	94.12
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	93.96
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	93.84
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	93.67
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	93.57
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	93.4
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	93.32
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	93.27
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	93.1
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	92.84
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	92.84
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	92.71
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	92.71
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	92.57
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	92.48
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	92.47
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	92.42
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	92.4
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	92.34
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	92.32
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	92.14
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	92.03
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	92.0
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	91.95
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	91.89
d2crza1	97	Fibronectin type-III domain containing protein 3a,	91.87
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	91.83
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	91.76
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	91.66
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	91.65
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	91.56
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	91.47
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	91.46
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	91.45
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	91.34
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	91.34
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	91.3
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	91.0
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	90.96
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	90.89
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	90.88
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	90.7
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	90.68
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	90.67
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	90.59
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	90.36
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	90.05
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	89.95
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	89.76
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	89.65
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	89.52
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	89.49
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	89.47
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	89.44
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	89.29
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	89.23
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	88.71
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	88.65
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	88.61
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	88.6
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	88.17
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	87.67
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	87.0
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	87.0
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	86.86
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	86.83
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	85.78
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	85.73
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	85.57
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	85.29
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	84.15
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	82.47
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	82.26

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.54  E-value=3.8e-15  Score=126.73  Aligned_cols=69  Identities=19%  Similarity=0.255  Sum_probs=57.9

Q ss_pred             CeeEeeeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEE-EeeEEeCCCeEEEEccCcEEEeCCCC
Q 043903           72 KVVMSIKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWL-TGSFILTSNFTLFLQKGAVILGSQEL  145 (146)
Q Consensus        72 ~~~~nV~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl-tg~l~L~SnvtL~l~~gAtL~as~d~  145 (146)
                      .+++||+||| +|||++|||+|||+||++|.     +|++|+||+|+|+ .++|.|+.+..+.++.+++|+++.+.
T Consensus        18 ~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~ac~-----~gg~V~iP~Gty~l~~~i~l~g~~~~~l~~~G~i~~~~~~   88 (422)
T d1rmga_          18 TKTCNILSYGAVADNSTDVGPAITSAWAACK-----SGGLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYRTGTA   88 (422)
T ss_dssp             HCEEEGGGGTCCCSSSSBCHHHHHHHHHHHT-----BTCEEEECSSEEEECSCEEEESCEEEEEEECSEEEECCCC
T ss_pred             CcEEEEecCCCCCCCCccCHHHHHHHHHhcC-----CCCEEEECCCcEEEeCcEEEcCCCceEEEEeEEEEeccCC
Confidence            4689999999 99999999999999998774     6789999999986 56799976655555666899887654

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=99.51  E-value=3.2e-15  Score=124.91  Aligned_cols=58  Identities=21%  Similarity=0.433  Sum_probs=52.9

Q ss_pred             CCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCE---EEEeeEEeCCCeEEEEccCcEEEeCCCC
Q 043903           83 GDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGL---WLTGSFILTSNFTLFLQKGAVILGSQEL  145 (146)
Q Consensus        83 gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~---Yltg~l~L~SnvtL~l~~gAtL~as~d~  145 (146)
                      .++.+|||+|||+||++|.     +|++|+||+|+   |++|+|+|+||++|+|++||+|+++.|+
T Consensus        19 ~~~~~~~T~aIq~AIdac~-----~Gg~V~iP~G~~~vyltg~i~LkSnv~L~l~~ga~L~~s~d~   79 (376)
T d1bhea_          19 KADSSTATSTIQKALNNCD-----QGKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVTLRAVNNA   79 (376)
T ss_dssp             ECCSSBCHHHHHHHHTTCC-----TTCEEEEECSSSSEEEESCEECCTTCEEEECTTCEEEECSCS
T ss_pred             CCCCChhHHHHHHHHHHCC-----CCCEEEEcCCCcceEEEecEEECCCCEEEEeCCEEEEEcCCH
Confidence            3567799999999999885     57899999997   9999999999999999999999999875

>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: iota-carrageenase
domain: iota-carrageenase
species: Alteromonas sp., atcc 43554 [TaxId: 232]

Probab=98.70  E-value=1.4e-08  Score=84.99  Aligned_cols=71  Identities=20%  Similarity=0.397  Sum_probs=61.9

Q ss_pred             CCeeEe-eeecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCC
Q 043903           71 RKVVMS-IKDFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQ  143 (146)
Q Consensus        71 ~~~~~n-V~dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~  143 (146)
                      +..-+| |.||| .++...||+.++|.||+++.  ...+||+|++|.|+|..-.|.++||++|++|++.+|....
T Consensus        18 ~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~s--r~~~GG~l~lp~g~y~l~~I~m~SNVhievE~~~viyPT~   90 (464)
T d1h80a_          18 QDVNYDLVDDFGANGNDTSDDSNALQRAINAIS--RKPNGGTLLIPNGTYHFLGIQMKSNVHIRVESDVIIKPTW   90 (464)
T ss_dssp             CSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHH--TSTTCEEEEECSSEEEECSEECCTTEEEEECTTCEEEECC
T ss_pred             hhccccchhhcccCCCcccCcHHHHHHHHHHhh--cCCCCcEEEEeCCcEEEEEEeeccceEEEEecCeEEeecC
Confidence            444555 47899 88889999999999999998  3678999999999999889999999999999998887654

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=98.48  E-value=8.7e-10  Score=91.36  Aligned_cols=53  Identities=13%  Similarity=0.003  Sum_probs=43.7

Q ss_pred             ecc-CCCCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEE
Q 043903           79 DFG-VGDGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFL  133 (146)
Q Consensus        79 dfG-~gDG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l  133 (146)
                      .|| ++++.+|||+|||+||.+|+  ...++++||||+|+|+++++.+++++++.+
T Consensus         2 ~~ga~p~~~~d~t~a~~~a~~~~~--~~~~~~vvy~PpG~y~~g~~~~~~~~~~~~   55 (373)
T d1ogmx2           2 PSGMIPHMTPDNTQTMTPGPINNG--DWGAKSILYFPPGVYWMNQDQSGNSGKLGS   55 (373)
T ss_dssp             CGGGSCCCCTTTEEECCSEEECTT--TTCSSSEEEECSEEEEECBCTTCCBSCSSS
T ss_pred             CCCccCCCCCCchHHhhhhhhhhc--ccCCCCEEEECCceeEeCCeeecCceEEEc
Confidence            589 99999999999999976665  245679999999999999887776665443

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=98.11  E-value=2.7e-07  Score=75.43  Aligned_cols=54  Identities=24%  Similarity=0.118  Sum_probs=42.5

Q ss_pred             CCcchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeC
Q 043903           84 DGTTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGS  142 (146)
Q Consensus        84 DG~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as  142 (146)
                      ||.||+|+||.+||.++|  ++.++++|+||+|+|+...- |+++++|.++  +++.+.
T Consensus         1 dg~t~~t~a~~~a~~~aC--~~~~~~~v~VP~G~~l~l~~-l~~g~~~~~~--g~~~~~   54 (335)
T d1czfa_           1 DSCTFTTAAAAKAGKAKC--STITLNNIEVPAGTTLDLTG-LTSGTKVIFE--GTTTFQ   54 (335)
T ss_dssp             CEEEESSHHHHHHHGGGC--SEEEEESCEECTTCCEEECS-CCTTCEEEEE--SEEEEC
T ss_pred             CCcccchHHHHHHHHHHC--CCCCCCeEEECCCCEEeccc-CCCCCEEEEE--eEEecc
Confidence            799999999999999887  35678999999999874331 5678888886  355543

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=97.87  E-value=1.3e-06  Score=71.58  Aligned_cols=51  Identities=20%  Similarity=0.204  Sum_probs=41.1

Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEccCcEEEeCC
Q 043903           88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQKGAVILGSQ  143 (146)
Q Consensus        88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~~gAtL~as~  143 (146)
                      +|+.|||+||++|.   +.++++|+||+|+|+... .|+++++|+++ |++..+..
T Consensus         6 ~d~~ai~~ai~~C~---~~~~~~v~vPaG~~l~~~-~l~~~~tl~~~-g~~~~~~~   56 (349)
T d1hg8a_           6 TEYSGLATAVSSCK---NIVLNGFQVPTGKQLDLS-SLQNDSTVTFK-GTTTFATT   56 (349)
T ss_dssp             SSGGGHHHHHHHCS---EEEECCCEECTTCCEEET-TCCTTCEEEEC-SEEEECCC
T ss_pred             CCHHHHHHHHHHcc---CCCCCeEEECCCceEeCC-CCCCCCEEEEE-eeEEeecc
Confidence            68999999999997   567899999999988543 36899999997 66665543

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=96.97  E-value=6e-05  Score=61.34  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=33.5

Q ss_pred             hhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEc
Q 043903           88 STTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ  134 (146)
Q Consensus        88 DdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~  134 (146)
                      +|+.|+|+||++|.   +.++++|+||+|+|+... .++.+.+|.++
T Consensus         6 ~~~~~i~~ai~~C~---~~~~~~v~VP~G~~l~l~-~~~~g~~v~~~   48 (336)
T d1nhca_           6 TSASEASESISSCS---DVVLSSIEVPAGETLDLS-DAADGSTITFE   48 (336)
T ss_dssp             SSHHHHHHHGGGCS---EEEEESCEECTTCCEECT-TCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHCc---CCCCCeEEECCCCeEeCC-CCCCCCEEEEE
Confidence            58899999999886   668899999999987422 13566777776

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=96.60  E-value=0.00032  Score=45.13  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=29.7

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.||+++..|..+..|..+.+
T Consensus        53 ~~~~~L~p~t~Y~~~V~A~n~~G~~s~~S~~v~v   86 (88)
T d1k85a_          53 ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV   86 (88)
T ss_dssp             EEECCCCSSCEEEEEEEEEETTTEECCCCCCEEE
T ss_pred             EEECCCCCCCEEEEEEEEEECCCCcCCCCcCEEE
Confidence            5689999999999999999999988877777655

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=96.25  E-value=0.00026  Score=57.53  Aligned_cols=45  Identities=13%  Similarity=0.091  Sum_probs=32.8

Q ss_pred             cchhHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEc
Q 043903           86 TTSTTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ  134 (146)
Q Consensus        86 ~tDdT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~  134 (146)
                      .+||.+++++|+++|.   ..++++|+||+|+|+.-. .|+++.++.++
T Consensus         8 g~d~~~~i~~a~~~C~---~~~~~~v~vPaG~~l~l~-~l~~g~~v~~~   52 (339)
T d1ia5a_           8 GSNGASSASKSKTSCS---TIVLSNVAVPSGTTLDLT-KLNDGTHVIFS   52 (339)
T ss_dssp             GGGHHHHHHHHGGGCS---EEEEESCEECTTCCEEEC-SCCTTCEEEEE
T ss_pred             CcccHHHHHHHHHhCc---CCCCCeEEECCCCeEeee-ccCCCCEEEee
Confidence            4699999999999986   567889999999976211 13455555554

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.23  E-value=0.0055  Score=39.68  Aligned_cols=34  Identities=15%  Similarity=0.164  Sum_probs=27.9

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +++.||+|++.|.|.|+++...| .+..|..+.|.
T Consensus        57 ~~i~~L~p~t~Y~~rV~A~n~~G-~g~~S~~~~~~   90 (94)
T d1x5aa1          57 VLLTKLQPDTTYIVRVRTLTPLG-PGPFSPDHEFR   90 (94)
T ss_dssp             EEEESCCSSCEEEEEEEEECSSS-CCCCCCCEEEE
T ss_pred             EEECCCCCCCEEEEEEEEEcCCc-CcCCCCCEEEE
Confidence            46899999999999999999998 45556666664

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0042  Score=39.01  Aligned_cols=33  Identities=9%  Similarity=0.034  Sum_probs=26.3

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.|+++...| .+..|..+.+
T Consensus        59 ~~v~~L~p~t~Y~~rV~A~n~~G-~s~~S~~~~~   91 (96)
T d1x5xa1          59 YTVKNLRRSTKYKFKVIAYNSEG-KSNPSEVVEF   91 (96)
T ss_dssp             EEEESCCSSCEEEEEEEEECSSC-EEEECCCEEE
T ss_pred             EEECCCCCCCEEEEEEEEEcCCc-EeCCCCCEEE
Confidence            56899999999999999998887 4545565555

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.0072  Score=38.13  Aligned_cols=31  Identities=16%  Similarity=0.020  Sum_probs=24.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFN   54 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~   54 (146)
                      .+++.||.|++.|.|.|+++...|.....+.
T Consensus        51 ~~~l~~L~p~t~Y~~~V~a~~~~g~s~~~s~   81 (91)
T d1fnaa_          51 TATISGLKPGVDYTITVYAVTGRGDSPASSK   81 (91)
T ss_dssp             EEEECSCCTTCEEEEEEEEECTTCCSSCSCC
T ss_pred             EEEeCCCCCCCEEEEEEEEEeCCccCCCcCC
Confidence            3568999999999999999988876544333

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.0036  Score=40.32  Aligned_cols=27  Identities=11%  Similarity=0.041  Sum_probs=22.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGA   51 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~   51 (146)
                      +++.||+|+|.|.|.||++...|..+.
T Consensus        62 ~~i~~L~p~t~Y~frV~A~n~~G~~s~   88 (104)
T d1bpva_          62 FTVSGLTEDAAYEFRVIAKNAAGAISP   88 (104)
T ss_dssp             EEECSCCSSCCEEEEEEEECTTSCEEE
T ss_pred             EEEcCCCCCCEEEEEEEEEECCCCCCC
Confidence            467899999999999999988876543

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.016  Score=36.16  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+.||+|++.|.|.|+++...|. +..|.++.+
T Consensus        56 ~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~   88 (92)
T d1qg3a1          56 VELTNLYPYCDYEMKVCAYGAQGE-GPYSSLVSC   88 (92)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSCB-CCCCCCEEE
T ss_pred             EEECCCCCCcEEEEEEEEEeCCcC-cCCCCCEEE
Confidence            567999999999999999988864 455666655

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.0069  Score=39.19  Aligned_cols=33  Identities=12%  Similarity=-0.097  Sum_probs=26.9

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+.||+|++.|.|.|+++...| .+..|..+.+
T Consensus        70 ~~i~~L~p~t~Y~~rV~A~n~~G-~s~~S~~v~v  102 (107)
T d2crma1          70 HLCDRLNPGCFYRLRVYCISDGG-QSAVSESLLV  102 (107)
T ss_dssp             EEECSCCTTSCEEEEEEEEETTE-ECCCCCCCCC
T ss_pred             EEEeccCCCCEEEEEEEEECCCc-CcCCCCcEEE
Confidence            46899999999999999999887 4556666655

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.01  Score=37.39  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.||++...| .+..|..+.+
T Consensus        56 ~~i~~L~p~t~Y~~~V~A~n~~G-~s~~S~~~~~   88 (93)
T d1x4xa1          56 YEIKGLSPATTYYCRVQALSVVG-AGPFSEVVAC   88 (93)
T ss_dssp             EEEESCCSSCEEEEEEEEECSSC-CCCBCCCEEE
T ss_pred             EEEcccceeeEEEEEEEEEECCc-CcCCCCcEEE
Confidence            45799999999999999998776 4445555554

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.0096  Score=38.10  Aligned_cols=33  Identities=12%  Similarity=0.179  Sum_probs=25.5

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.||++...| .+..|..+.+
T Consensus        74 ~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~v~~  106 (111)
T d1x5ka1          74 HQIQELTLDTPYYFKIQARNSKG-MGPMSEAVQF  106 (111)
T ss_dssp             EEECSCCSSSEEEEEEEEECSSC-BCCCCCCEEE
T ss_pred             EEECCCCCCCEEEEEEEEEcCCC-CcCCCCCEEE
Confidence            46899999999999999998876 4444555544

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.011  Score=38.01  Aligned_cols=33  Identities=12%  Similarity=0.050  Sum_probs=25.4

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.|+++...|. +..|..+.+
T Consensus        66 ~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~v~v   98 (103)
T d1x5ga1          66 YTINGLKKYTEYSFRVVAYNKHGP-GVSTPDVAV   98 (103)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSCC-CCBCCCCCE
T ss_pred             EecCCCCCCCEEEEEEEEEcCCcC-cCCCCCEEE
Confidence            468999999999999999988764 334555544

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=93.84  E-value=0.0025  Score=51.66  Aligned_cols=38  Identities=16%  Similarity=0.029  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEeCCCeEEEEc
Q 043903           92 VFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFILTSNFTLFLQ  134 (146)
Q Consensus        92 A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L~SnvtL~l~  134 (146)
                      +.+.||++|.   +.++++|+||+|+|+.  |++..+.+|.++
T Consensus         7 ~~a~~i~~Cs---~~~~~~v~VPaG~~l~--L~~~~g~~v~f~   44 (333)
T d1k5ca_           7 DDAKDIAGCS---AVTLNGFTVPAGNTLV--LNPDKGATVTMA   44 (333)
T ss_dssp             TGGGGCTTCS---EEEECCEEECTTCCEE--ECCCTTCEEEEC
T ss_pred             HhhhhHhhCc---CCCCCeEEECCCCEEE--EecccCCEEEEe
Confidence            3344454453   6788999999999873  445666677665

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.0073  Score=38.83  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=26.0

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|++.|.|.|+++...| .+..|..+.+
T Consensus        65 ~~i~~L~p~t~Y~~~V~A~n~~G-~g~~S~~v~~   97 (102)
T d1x5za1          65 YRLQGLKPNSLYYFRLAARSPQG-LGASTAEISA   97 (102)
T ss_dssp             EEEECCCTTCEEEECEEEECSSC-EEEECCCEEE
T ss_pred             EEECCCCCCCEEEEEEEEEcCCC-EeCCCCCEEE
Confidence            56899999999999999988776 3445555555

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.57  E-value=0.014  Score=36.98  Aligned_cols=33  Identities=27%  Similarity=0.152  Sum_probs=23.7

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcce
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPAT   57 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~   57 (146)
                      +++.||+|++.|.|.||+....|.-|.-|..+.
T Consensus        67 ~~i~~L~p~t~Y~~rVrA~n~~G~ws~wS~~~~   99 (104)
T d3d48r2          67 FKILSLHPGQKYLVQVRCKPDHGYWSAWSPATF   99 (104)
T ss_dssp             EEECC--CCCEEEEEEEEEESSSCCCCCCCCEE
T ss_pred             EEECCCCCCCEEEEEEEEEeCCCCCCCCcCCEE
Confidence            457899999999999999988875454455443

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=93.40  E-value=0.042  Score=44.15  Aligned_cols=32  Identities=19%  Similarity=0.403  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHhhhcCCCCCcEEEecCCEEEEeeEEe
Q 043903           89 TTEVFRKAVRYVQAFGDKGGTQLNVPEGLWLTGSFIL  125 (146)
Q Consensus        89 dT~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yltg~l~L  125 (146)
                      +.+.||+||+.|.     .|.+|+|++|+|.-..|.+
T Consensus         5 ~~~tiq~Ai~~a~-----pGDtI~l~~GtY~~~~i~~   36 (481)
T d1ofla_           5 SNETLYQVVKEVK-----PGGLVQIADGTYKDVQLIV   36 (481)
T ss_dssp             SHHHHHHHHHHCC-----TTCEEEECSEEEETCEEEE
T ss_pred             ChHHHHHHHHhCC-----CCCEEEECCCEEEcCEEEe
Confidence            5688999999986     7899999999997544544

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.02  Score=36.21  Aligned_cols=25  Identities=16%  Similarity=0.122  Sum_probs=20.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      +.+.||+|++.|.|.||+....|..
T Consensus        64 ~~i~~L~p~t~Y~~rVra~~~~g~~   88 (104)
T d2b5ib2          64 ICLETLTPDTQYEFQVRVKPLQGEF   88 (104)
T ss_dssp             EEECSCCTTCEEEEEEEEEESCCSS
T ss_pred             EEECCCCCCCEEEEEEEEEECCCCC
Confidence            3578999999999999998776543

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.27  E-value=0.011  Score=39.10  Aligned_cols=34  Identities=12%  Similarity=-0.049  Sum_probs=27.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+.+
T Consensus        76 ~~~v~~L~p~t~Y~frV~A~n~~G~-s~~S~~~~~  109 (120)
T d1wfua_          76 RHVVEGLEPRTLYKFRLKVTSPSGE-YEYSPVVSV  109 (120)
T ss_dssp             EEEEESCCTTCEEEEEEEEECSSSC-EEECCCEEE
T ss_pred             EEeCCCCCCCcEeeEEEEEEeCCcE-eCCCCCEEE
Confidence            3578999999999999999988874 555665555

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.026  Score=35.52  Aligned_cols=33  Identities=9%  Similarity=-0.126  Sum_probs=25.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.|.||+|.|.|.|.|++....|. +..|+.+.+
T Consensus        63 ~~i~~L~p~t~Y~~~V~a~n~~g~-s~~S~~~~~   95 (100)
T d1x5ja1          63 YLVTGLKPNTLYEFSVMVTKGRRS-STWSMTAHG   95 (100)
T ss_dssp             EEEESCCTTCEECCEEEEECSSCB-CCCCCCCCE
T ss_pred             EEECCCCCCCEEEEEEEEEeCCcC-cCCCCeEEE
Confidence            568999999999999998876643 555666655

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.015  Score=37.11  Aligned_cols=33  Identities=9%  Similarity=0.070  Sum_probs=25.9

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.||+|.+.|.|.|+++...|. +..|..+.+
T Consensus        73 ~~i~~L~p~t~Y~~~V~a~n~~G~-g~~S~~v~~  105 (109)
T d1va9a1          73 YTLDNLKKFAQYGVVVQAFNRAGT-GPSSSEINA  105 (109)
T ss_dssp             EEEESCCSSCCEEEEEEEEETTEE-CCCCCCEEC
T ss_pred             EEECCCCcceEEEEEEEEEcCCcC-CCCCCCEEE
Confidence            468999999999999999988863 555555544

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.84  E-value=0.022  Score=36.10  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.+|+|++.|.|.||++...| .+..|..+.|.
T Consensus        64 ~~i~~L~p~t~Y~~~v~a~n~~G-~s~~S~~~~~~   97 (101)
T d1x4ya1          64 HSISHLQPETSYDIKMQCFNEGG-ESEFSNVMICE   97 (101)
T ss_dssp             EEECSCCTTCEEEEEEEEECTTC-CCCCCCCEEEE
T ss_pred             EEEcCCCCCCEEEEEEEEEcCCC-CCCCCCcEEEE
Confidence            46899999999999999998876 46677777774

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.024  Score=37.42  Aligned_cols=34  Identities=12%  Similarity=-0.024  Sum_probs=25.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCC----CCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAE----GALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~----~~~~~~~~~   58 (146)
                      +.+.||+|.|.|.|.|+++...|..    ++.|..+.+
T Consensus        84 ~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~  121 (125)
T d2dtge3          84 WLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYV  121 (125)
T ss_dssp             EEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCC
T ss_pred             EEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEEE
Confidence            5689999999999999999888753    334554444

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.016  Score=36.30  Aligned_cols=33  Identities=18%  Similarity=0.152  Sum_probs=25.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+.||+|++.|.|.||++...|. +..|..+.+
T Consensus        58 ~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~   90 (95)
T d2djsa1          58 ARIDGLRPGMVYVVQVRARTVAGY-GKFSGKMCF   90 (95)
T ss_dssp             EEEESCCTTCEEEEEEEEEESSCE-EEECCCEEE
T ss_pred             EEEeecCCccEEEEEEEEEcCCCC-CCCCCCEEE
Confidence            467999999999999999988763 334555544

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.017  Score=37.26  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=21.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|.||++...|.
T Consensus        66 ~~i~~L~p~t~Y~frVra~n~~g~   89 (105)
T d2d9qb2          66 YELCGLLPATAYTLQIRCIRWPLP   89 (105)
T ss_dssp             EEECSCCSCCCEEEEEEEEECSSC
T ss_pred             eEEecccCCeEEEEEEEEEeCCCC
Confidence            478999999999999999887765

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.015  Score=38.04  Aligned_cols=34  Identities=18%  Similarity=0.060  Sum_probs=27.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.|.+|+|+|.|.|.|+++...|. +..|..+.+.
T Consensus        82 ~~i~~L~p~t~Y~~~V~A~n~~G~-g~~S~~~~~~  115 (125)
T d1uena_          82 GMLPGLEPFSHYTLNVRVVNGKGE-GPASPDRVFN  115 (125)
T ss_dssp             EEEESCCSSCEEEEEEEEEESSCE-EEECCCEEEE
T ss_pred             EEECCCCCCCEEEEEEEEEeCCcc-cCCCCCEEEE
Confidence            568999999999999999998873 5556666653

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.48  E-value=0.014  Score=37.96  Aligned_cols=25  Identities=8%  Similarity=0.008  Sum_probs=21.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      +++.||+|++.|.|.|+++...|..
T Consensus        70 ~~i~~L~p~t~Y~frV~A~N~~G~s   94 (107)
T d2ic2a1          70 ASVTDLKPQHTYRFRILAVYSNNDN   94 (107)
T ss_dssp             EEECSCCSSEEEEEEEEEEETTSCE
T ss_pred             EEECCCcCCcEEEEEEEEEcCCCCC
Confidence            4789999999999999999988654

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.022  Score=36.55  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...|. +..|....+
T Consensus        63 ~~~i~~L~p~t~Y~frV~A~N~~G~-g~~S~~~~~   96 (101)
T d2haza1          63 IVTIVGLKPETTYAVRLAALNGKGL-GEISAASEF   96 (101)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEE-CCCCCCEEE
T ss_pred             EEEecCCCCCeEEEEEEEEEeCCcC-cCCCCceeE
Confidence            4678999999999999999987763 444554444

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.42  E-value=0.014  Score=36.27  Aligned_cols=24  Identities=13%  Similarity=-0.038  Sum_probs=20.7

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|.|+++..+|.
T Consensus        58 ~~i~~L~p~t~Y~~~V~a~~~~g~   81 (92)
T d1tdqa2          58 TTLTDLVPGTEYGVGISAVMNSKQ   81 (92)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE
T ss_pred             EEECCccCCCEEEEEEEEEeCCCE
Confidence            578999999999999999887653

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.014  Score=36.77  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=21.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|+|+++..+|.
T Consensus        61 ~~~i~~L~p~t~Y~~~V~a~~~~g~   85 (95)
T d2fnba_          61 YYTVTGLEPGIDYDISVITLINGGE   85 (95)
T ss_dssp             EEEECCCCTTSEEEEEEEEEETTEE
T ss_pred             EEEEecccCCEEEEEEEEEEeCCcE
Confidence            3578999999999999999887653

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.34  E-value=0.027  Score=35.90  Aligned_cols=27  Identities=19%  Similarity=0.075  Sum_probs=22.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEG   50 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~   50 (146)
                      .+++.||.|++.|.|.||+....|.-|
T Consensus        66 ~~~i~~L~p~t~Y~~rVra~~~~G~wS   92 (103)
T d1f6fb2          66 QFKVFDLYPGQKYLVQTRCKPDHGYWS   92 (103)
T ss_dssp             EEEECCCCTTCEEEEEEEEEESSSCCC
T ss_pred             EEEeCCCCcceEEEEEEEEEeCCCCCC
Confidence            357899999999999999988776444

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.32  E-value=0.02  Score=37.19  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=21.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.+|+|+|.|.|.||++...|.
T Consensus        67 ~~l~~L~p~t~Y~frVra~~~~g~   90 (106)
T d1cd9b2          67 FELCGLHQAPVYTLQMRCIRSSLP   90 (106)
T ss_dssp             EEECCCCSCSCEEEEEEEEESSSC
T ss_pred             EEEeccCCCeEEEEEEEEEeCCCC
Confidence            357899999999999999988865

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.015  Score=38.37  Aligned_cols=24  Identities=13%  Similarity=0.177  Sum_probs=21.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|.||++...|.
T Consensus        74 ~~v~~L~p~t~Y~frV~A~N~~G~   97 (117)
T d1uema_          74 YTVRGLRPNTIYLFMVRAINPQGL   97 (117)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE
T ss_pred             ceECCCCCCCEEEEEEEEEeCCcC
Confidence            568999999999999999987764

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.021  Score=38.45  Aligned_cols=35  Identities=11%  Similarity=-0.086  Sum_probs=26.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      .+++.||+|.|.|.|.||++...|. +..|..+.+.
T Consensus        83 ~~~i~~L~P~t~Y~f~V~A~n~~G~-g~~S~~~~~~  117 (137)
T d1wk0a_          83 NITLNDLKPAMDYHAKVQAEYNSIK-GTPSEAEIFT  117 (137)
T ss_dssp             EEEECSCCTTCEECEEEEEEETTEE-CCCCCCCCEE
T ss_pred             EEEECCCCCCcEEEEEEEEEcCCcc-cCCCCCEEEE
Confidence            3568999999999999999987763 4445555553

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.00  E-value=0.022  Score=37.33  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|.|+++...|.
T Consensus        71 ~~v~~L~p~t~Y~frV~A~N~~G~   94 (108)
T d1x4za1          71 VEITGLEKGISYKFRVRALNMLGE   94 (108)
T ss_dssp             EEEESCCTTCEEEEEEEEEETTEE
T ss_pred             EEECCCCCCCEEEEEEEEECCCcC
Confidence            468999999999999999987764

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.95  E-value=0.044  Score=34.41  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +.+.||+|.|.|.|.|+++...|.
T Consensus        67 ~~i~~L~p~t~Y~~~V~A~n~~G~   90 (95)
T d2ibga1          67 FKIAPLETATMYEFKLQSFSAASA   90 (95)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSCB
T ss_pred             EEEeeccCCeEEEEEEEEEeCCcc
Confidence            567999999999999999877763

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.018  Score=37.06  Aligned_cols=25  Identities=12%  Similarity=0.193  Sum_probs=21.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||.|++.|.|.|+++...|.
T Consensus        60 ~~~v~~L~~~~~Y~frV~A~n~~G~   84 (98)
T d1x5ya1          60 GFTVKDLPTGARILFRVVGVNIAGR   84 (98)
T ss_dssp             EEEEECCCTTCCEEEEEEEEETTEE
T ss_pred             EEEECCCcCCeEEEEEEEEECCCcC
Confidence            4678999999999999999987764

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.02  Score=36.93  Aligned_cols=31  Identities=23%  Similarity=0.185  Sum_probs=24.0

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcc
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPA   56 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~   56 (146)
                      +++.+|+|++.|.|.||++...|. +..|...
T Consensus        60 ~~v~~L~p~t~Y~frV~A~N~~G~-s~~S~~~   90 (97)
T d2crza1          60 CTVSSLLPGKTYSFRLRAANKMGF-GPFSEKC   90 (97)
T ss_dssp             EEEESCCTTCEEEECCEEECSSCB-CCCCCCE
T ss_pred             EEEcCCCCCEEEEEEEEEecCCeE-cCCcCCC
Confidence            468999999999999999988873 4334433

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.019  Score=35.69  Aligned_cols=23  Identities=9%  Similarity=-0.000  Sum_probs=20.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +.+.||+|++.|.|.|+++...|
T Consensus        56 ~~~~~L~p~t~Y~~~V~a~n~~g   78 (89)
T d1fnha3          56 ATITGLEPGTEYTIYVIALKNNQ   78 (89)
T ss_dssp             EEEESCCTTCEEEEEEEEESSSC
T ss_pred             EEEEeeeCCCEEEEEEEEEcCCC
Confidence            57899999999999999987664

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.018  Score=35.79  Aligned_cols=24  Identities=13%  Similarity=0.036  Sum_probs=20.8

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|.|+++...|
T Consensus        54 ~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1          54 SVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTE
T ss_pred             EEEEecccCceEEEEEEEEEeCCC
Confidence            467899999999999999987664

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.66  E-value=0.024  Score=36.50  Aligned_cols=33  Identities=15%  Similarity=0.045  Sum_probs=25.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +.+.+|+|++.|.|.||++...| .+..|..+.+
T Consensus        68 ~~~~~L~p~t~Y~frV~A~N~~G-~s~~S~~~~~  100 (105)
T d1x3da1          68 FKITKLSPAMGCKFRLSARNDYG-TSGFSEEVLY  100 (105)
T ss_dssp             EEEESCCTTCEEEEECCEEESSC-BCCCCCCEEE
T ss_pred             EEecCCcCCcEEEEEEEEECCCe-EcCCCCcEEE
Confidence            56789999999999999998876 3445555555

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.02  Score=35.69  Aligned_cols=24  Identities=17%  Similarity=0.038  Sum_probs=20.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|.|+++..+|
T Consensus        56 ~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2          56 AVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTE
T ss_pred             EEEEeceeCCCEEEEEEEEEcCCC
Confidence            356899999999999999887664

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.03  Score=35.79  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=25.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.||++...|. +..|..+..
T Consensus        60 ~~~i~~L~p~t~Y~~~V~a~n~~G~-g~~S~~v~~   93 (98)
T d1x5la1          60 RATVSGLKPGTRYVFQVRARTSAGC-GRFSQAMEV   93 (98)
T ss_dssp             EEEECSCCTTCEEEECEEEEETTEE-CCCCCCEEE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCCC-cCCCCCEEE
Confidence            4568999999999999999988763 334454443

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.023  Score=36.94  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=26.5

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      +++.+|.|++.|.|.|+++...| .+..|..+.+
T Consensus        70 ~~~~~L~p~t~Y~~rV~A~n~~G-~g~~S~~i~v  102 (107)
T d1x5fa1          70 VTIQNLMPATVYIFRVMAQNKHG-SGESSAPLRV  102 (107)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSC-EEEECCCEEE
T ss_pred             EEecCCCCCCEEEEEEEEEeCCC-CcCCCCCEEE
Confidence            56899999999999999998886 4445666666

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.02  Score=35.64  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=20.3

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +.+.||+|++.|.|.|+++...|
T Consensus        56 ~~i~~L~p~t~Y~~~V~a~~~~g   78 (89)
T d1fnfa3          56 ITLTNLTPGTEYVVSIVALNGRE   78 (89)
T ss_dssp             EEEESCCTTCEEEEEEEEEETTE
T ss_pred             EEECCCcccCEEEEEEEEEcCCc
Confidence            56899999999999999987665

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.023  Score=37.99  Aligned_cols=27  Identities=15%  Similarity=0.076  Sum_probs=22.4

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGA   51 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~   51 (146)
                      +.+.||.|+|.|.|+|+++..+|....
T Consensus       157 ~~i~~L~p~t~Y~~~V~A~n~~~~~~~  183 (196)
T d2dtge2         157 LVISGLRHFTGYRIELQACNQDTPEER  183 (196)
T ss_dssp             EEECSSCSSCEEEECCEEESCSSSSCC
T ss_pred             EEECCCCCCCEEEEEEEEEECCCCCCC
Confidence            457999999999999999987766543

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.035  Score=35.04  Aligned_cols=24  Identities=13%  Similarity=-0.053  Sum_probs=20.4

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|.+.|.|.|+++..+|.
T Consensus        67 ~~v~~L~p~t~Y~~~V~a~~~~g~   90 (101)
T d2cuia1          67 AVLRDLRSGTLYSLTLYGLRGPHK   90 (101)
T ss_dssp             EEECSCCTTCEEEEEEEEECSSSE
T ss_pred             EEeCCCCcCCEEEEEEEEEeCCcE
Confidence            457899999999999999877654

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.022  Score=35.55  Aligned_cols=24  Identities=17%  Similarity=-0.075  Sum_probs=20.4

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|.|+++..+|.
T Consensus        57 ~~i~~L~p~t~Y~~~V~a~~~~g~   80 (90)
T d1tena_          57 YSIGNLKPDTEYEVSLISRRGDMS   80 (90)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE
T ss_pred             eeEeeecCCCEEEEEEEEEeCCCE
Confidence            568999999999999998876653

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.03  Score=35.10  Aligned_cols=24  Identities=13%  Similarity=-0.039  Sum_probs=20.5

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|+|+++...|.
T Consensus        55 ~~i~~L~p~t~Y~~~V~a~~~~g~   78 (93)
T d2cuma1          55 HQLLGLFPSTSYNARLQAMWGQSL   78 (93)
T ss_dssp             EEECSCCTTCEEEEEEEEEBTTBC
T ss_pred             EEEeCccCCCEEEEEEEEEeCCCC
Confidence            568999999999999999876653

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.031  Score=34.95  Aligned_cols=24  Identities=8%  Similarity=-0.042  Sum_probs=20.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||.|.+.|.|+|+++...|
T Consensus        56 ~~~i~~L~p~t~Y~~~V~a~~~~g   79 (94)
T d1j8ka_          56 TAELQGLRPGSEYTVSVVALHDDM   79 (94)
T ss_dssp             EEEECSCCCCSEEEEEEEECSSSC
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCC
Confidence            357899999999999999887665

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.96  E-value=0.027  Score=36.61  Aligned_cols=26  Identities=15%  Similarity=-0.058  Sum_probs=21.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|++.|.|+|.++...|..
T Consensus        57 ~~~l~gL~P~t~Y~v~v~av~~~G~s   82 (93)
T d1owwa_          57 SYTIKGLKPGVVYEGQLISIQQYGHQ   82 (93)
T ss_dssp             EEEECSCCSSEEEEEEEEEEESSSCE
T ss_pred             EEEECCcccCcEEEEEEEEEeCCCcc
Confidence            35789999999999999998877643

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.11  Score=34.47  Aligned_cols=35  Identities=11%  Similarity=-0.039  Sum_probs=27.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceeec
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCVA   60 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~~   60 (146)
                      +.+.||+|++.|.|.|++....| .+..|+.+.+.+
T Consensus        77 ~~i~~L~p~t~Y~f~V~A~n~~G-~G~~S~~~~~~T  111 (120)
T d1ujta_          77 AVLVNLKKGVTYEIKVRPYFNEF-QGMDSESKTVRT  111 (120)
T ss_dssp             EEEESCCSSEEEEEEEEEESSSC-CCCCCCCEEEEE
T ss_pred             EEECCCCCCCEEEEEEEEEeCCc-CcCCCCCEEEEe
Confidence            46899999999999999988876 455567776643

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.88  E-value=0.033  Score=34.54  Aligned_cols=24  Identities=13%  Similarity=-0.058  Sum_probs=20.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|.|+++..+|
T Consensus        52 ~~~~~~L~p~t~Y~v~V~a~~~~~   75 (87)
T d1qr4a1          52 SFILRGLDAGTEYTISLVAEKGRH   75 (87)
T ss_dssp             EEEEESCCSSCEEEEEEEEESSSC
T ss_pred             EEEECCCCcCCEEEEEEEEEcCCC
Confidence            356899999999999999887765

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.70  E-value=0.028  Score=35.13  Aligned_cols=23  Identities=13%  Similarity=-0.055  Sum_probs=20.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +++.||.|+++|.|.|+++...|
T Consensus        55 ~~i~~L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2          55 TKLVKLVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             EEECSCCSSCEEEEEEEEEETTE
T ss_pred             EEECCCCCCCEEEEEEEEEeCCC
Confidence            56899999999999999998775

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.027  Score=35.52  Aligned_cols=24  Identities=13%  Similarity=0.077  Sum_probs=21.3

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|++.|.|.|+++...|.
T Consensus        58 ~~i~~L~p~t~Y~~~V~A~N~~G~   81 (93)
T d2vkwa2          58 VMLKSLDWNAEYEVYVVAENQQGK   81 (93)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE
T ss_pred             EEEeccccceEEEEEEEEEcCCCC
Confidence            568999999999999999988874

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.03  Score=35.97  Aligned_cols=25  Identities=8%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.|+++...|.
T Consensus        68 ~~~i~~L~p~t~Y~~~V~A~n~~G~   92 (106)
T d1wfna1          68 EYRVTGLTALTTYTIEVAAMTSKGQ   92 (106)
T ss_dssp             EEEEESCCTTCEEEEEEEEECSSCE
T ss_pred             EEEEccCCCCCEEEEEEEEECCCCC
Confidence            3568999999999999999887763

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.058  Score=34.12  Aligned_cols=28  Identities=7%  Similarity=0.036  Sum_probs=22.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCc
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGAL   52 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~   52 (146)
                      +++.+|+|++.|.|.||+....|.....
T Consensus        63 ~~l~~L~p~t~Y~~rVRa~~~~g~~~g~   90 (100)
T d2gysa4          63 MALPALEPSTRYWARVRVRTSRTGYNGI   90 (100)
T ss_dssp             EECCCCCSSCCCEEEEEEEECCTTCCBC
T ss_pred             EEeCCCCCCCeEEEEEEEEECCCCCCCC
Confidence            4688999999999999988766654333

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.026  Score=36.02  Aligned_cols=24  Identities=13%  Similarity=-0.135  Sum_probs=20.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|+++|.|+|+++..+|
T Consensus        59 ~~~i~~L~p~t~Y~v~V~a~~~~g   82 (94)
T d1fnfa1          59 SCTFDNLSPGLEYNVSVYTVKDDK   82 (94)
T ss_dssp             EEECCCCCTTSCEEEEEEEEETTE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCC
Confidence            467899999999999999887665

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.038  Score=35.91  Aligned_cols=25  Identities=16%  Similarity=0.118  Sum_probs=21.6

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.||+|++.|.|.|+++...|.
T Consensus        70 ~~~i~~L~p~t~Y~frV~A~N~~G~   94 (108)
T d1wf5a1          70 SVTVKGLVPARSYQFRLCAVNDVGK   94 (108)
T ss_dssp             EEEEESCCTTCEEEEEEEEEESSCE
T ss_pred             EEEECCCCCCCEEEEEEEEEcCCcC
Confidence            3578999999999999999987763

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.024  Score=36.39  Aligned_cols=24  Identities=17%  Similarity=0.278  Sum_probs=20.7

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +.+.||+|++.|.|.|+++...|.
T Consensus        74 ~~v~~L~p~t~Y~frV~A~N~~G~   97 (111)
T d1wisa1          74 MEVPDLNPFTCYSFRMRQVNIVGT   97 (111)
T ss_dssp             EEECSCCTTSEECCCCEEECSSCB
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCcC
Confidence            567899999999999999887764

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.76  E-value=0.028  Score=35.62  Aligned_cols=26  Identities=12%  Similarity=0.100  Sum_probs=22.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.||+|.+.|.|.|+++...|..
T Consensus        65 ~~~i~~L~p~t~Y~~~V~A~n~~G~g   90 (103)
T d1qg3a2          65 MLLIENLRESQPYRYTVKARNGAGWG   90 (103)
T ss_dssp             EEEECCCCTTCCEEEEEEEEETTEEC
T ss_pred             EEEEeecCCCCEEEEEEEEEcCCccC
Confidence            35789999999999999999877644

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.65  E-value=0.049  Score=34.73  Aligned_cols=25  Identities=20%  Similarity=0.023  Sum_probs=21.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+++.+|+|.+.|.|.||+....|.
T Consensus        62 ~~~i~~L~p~t~Y~~rVra~n~~g~   86 (104)
T d1n26a3          62 HCVIHDAWSGLRHVVQLRAQEEFGQ   86 (104)
T ss_dssp             EEEESSCCTTCCEEEEEEEEETTTB
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCCc
Confidence            3568999999999999999877654

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.52  E-value=0.037  Score=36.60  Aligned_cols=34  Identities=12%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.||+|.+.|.|.||++...|. +..|.++.+.
T Consensus        73 ~~i~~L~~~t~Y~v~V~A~n~~G~-s~~S~~v~i~  106 (117)
T d2cspa1          73 VELVRLRSLEAKGVTVRTLSAQGE-SVDSAVAAVP  106 (117)
T ss_dssp             EESHHHHHHTCSCBEEEEEESSCC-CCCCSCBCCC
T ss_pred             eeccCCCCCcEEEEEEEEEcCCCc-CCCCCCEEee
Confidence            457899999999999999998875 4566666553

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.49  E-value=0.044  Score=34.03  Aligned_cols=23  Identities=9%  Similarity=0.030  Sum_probs=19.7

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +.+.||.|++.|.|+|+++...|
T Consensus        54 ~~~~~L~p~t~Y~v~V~a~~~~~   76 (86)
T d1tdqa3          54 YTLTDLEPGAEYIISITAERGRQ   76 (86)
T ss_dssp             EEECCCCTTCCEEEEEEEEETTE
T ss_pred             EEECCCccccEEEEEEEEEcCCC
Confidence            46789999999999999887554

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.038  Score=34.58  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=20.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+.+.||+|++.|.|.|+++...|
T Consensus        55 ~~~i~~L~p~t~Y~~~V~a~~~~g   78 (90)
T d1fnha2          55 SYTITGLQPGTDYKIYLYTLNDNA   78 (90)
T ss_dssp             EEEEESCCTTCEEEEEEEEEETTE
T ss_pred             EEEeCCCCCCcEEEEEEEEEeCCC
Confidence            456899999999999999887664

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.44  E-value=0.031  Score=36.61  Aligned_cols=34  Identities=12%  Similarity=0.069  Sum_probs=26.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCCCCcCCcceee
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAEGALFNPATCV   59 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~~   59 (146)
                      +.+.||+|++.|.|.|++....|. +..|..+.+.
T Consensus        72 ~~i~~L~p~t~Y~~~V~A~n~~G~-G~~S~~~~~~  105 (119)
T d1x5ha1          72 QLIEGLDRGTEYNFRVAALTINGT-GPATDWLSAE  105 (119)
T ss_dssp             EEEECCCSSCEEEEECEEEETTEE-EEECCCEEEE
T ss_pred             EEeCCCCCCCEEEEEEEEEcCCcC-CCCCCCEEEE
Confidence            457999999999999999887764 3445556664

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.29  E-value=0.051  Score=35.90  Aligned_cols=25  Identities=8%  Similarity=-0.017  Sum_probs=21.9

Q ss_pred             HHHHHhCCCCCCcceeEEEEeeccC
Q 043903           23 TLIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        23 ~~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +.+.+.+|+|++.|.|.|+++...|
T Consensus        78 ~~~~i~~L~p~t~Y~frV~A~N~~G  102 (123)
T d1wfta_          78 LANAHIDYTSRPAIVFRISAKNEKG  102 (123)
T ss_dssp             HTTCCCBCSSSCEEEEEEEEBSSSS
T ss_pred             cEEEEcCCCCCCEEEEEEEEecCCc
Confidence            4567899999999999999988776

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.042  Score=34.94  Aligned_cols=24  Identities=8%  Similarity=0.018  Sum_probs=20.4

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|++.|.|.|+++...|
T Consensus        53 ~~~l~~L~p~t~Y~~~V~a~~~~~   76 (102)
T d2cuha1          53 DYPLHDLVLHTNYTATVRGLRGPN   76 (102)
T ss_dssp             EEEECSCCSSSEEEEEEEEEETTE
T ss_pred             eEEEccEEeeEEEEEEEEEEeCCC
Confidence            357899999999999999887554

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.082  Score=33.17  Aligned_cols=24  Identities=13%  Similarity=-0.076  Sum_probs=15.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +.+.+|+|++.|.|.||+....|.
T Consensus        65 ~~i~~L~p~t~Y~~rVrA~~~~g~   88 (101)
T d1iarb2          65 IAASTLKSGISYRARVRAWAQAYN   88 (101)
T ss_dssp             ECC-----CCCEEEEEEEECGGGT
T ss_pred             EEECCCCCCCEEEEEEEEEcCCCC
Confidence            467899999999999999876654

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.054  Score=35.26  Aligned_cols=23  Identities=9%  Similarity=0.036  Sum_probs=20.4

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +++.||+|++.|.|.|+++...|
T Consensus        80 ~~i~~L~p~t~Y~~~V~A~n~~G  102 (117)
T d1wfoa1          80 YTATGLKPESVYLFRITAQTRKG  102 (117)
T ss_dssp             EEEESCCSSSEEEEEEEEECSSC
T ss_pred             EEECCCCCCCEEEEEEEEECCCc
Confidence            56899999999999999987765

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.61  E-value=0.048  Score=34.24  Aligned_cols=24  Identities=13%  Similarity=0.095  Sum_probs=20.3

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||+|+++|.|.|+++...|.
T Consensus        59 ~~i~~L~p~t~Y~v~V~a~~~~g~   82 (93)
T d1tdqa1          59 YSVQALRPGSRYEVSISAVRGTNE   82 (93)
T ss_dssp             EEECSCCTTCEEEEEEEEEETTEE
T ss_pred             EEEeCcccceEEEEEEEEEeCCCC
Confidence            568999999999999998876643

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.046  Score=34.14  Aligned_cols=24  Identities=13%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.||.|++.|.|.|+++...|.
T Consensus        57 ~~i~~L~p~t~Y~~~V~A~n~~G~   80 (94)
T d2dn7a1          57 FTVTGLHKGTTYIFRLAAKNRAGL   80 (94)
T ss_dssp             EEEECCCTTCEEEEEEEEEETTEE
T ss_pred             EEEEccCCeeEEEEEEEEEcCCcC
Confidence            568999999999999999987764

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=0.077  Score=34.37  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      .+++.||+|+++|.|.||+...+|
T Consensus        66 ~~~i~~L~~~t~Y~frVRa~~~~~   89 (106)
T d1axib2          66 SVPVYSLKVDKEYEVRVRSKQRNS   89 (106)
T ss_dssp             EEEEEEEETTSCEEEEEEEEETTS
T ss_pred             eEEECCCCCCCEEEEEEEEEECCC
Confidence            356899999999999999876553

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=0.046  Score=35.40  Aligned_cols=34  Identities=15%  Similarity=-0.136  Sum_probs=25.7

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCCCCcCCccee
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAEGALFNPATC   58 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~~   58 (146)
                      .+++.||+|++.|.|.|+++...| .+..|..+.+
T Consensus        64 ~~~i~~L~p~t~Y~~rV~A~n~~g-~s~~S~~~~~   97 (108)
T d1v5ja_          64 ELLVPGLIKDVLYEFRLVAFAGSF-VSDPSNTANV   97 (108)
T ss_dssp             EEECCCCCTTSCEECCBEEEETTE-EEEECSCCCC
T ss_pred             eEEEEeccCCcEEEEEEEEEeCCC-EeCCcCceEE
Confidence            356899999999999999998886 3444554444

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.00  E-value=0.098  Score=34.26  Aligned_cols=24  Identities=17%  Similarity=0.050  Sum_probs=21.1

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +.+.+|+|.+.|.|.|+++...|.
T Consensus        76 ~~i~~L~p~t~Y~frV~A~n~~G~   99 (127)
T d1ueya_          76 TAQLNLSPYVNYSFRVMAVNSIGK   99 (127)
T ss_dssp             EEEECCCTTCEECCEEEEEESSCB
T ss_pred             EEECCCccCCEEEEEEEEEcCCcC
Confidence            457899999999999999998864

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.00  E-value=0.11  Score=33.67  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      .+++.+|+|++.|.|.|+++...|.-
T Consensus        75 ~~~i~~L~p~t~Y~~~V~A~n~~G~g  100 (113)
T d1x5ia1          75 YYTIENLDPSSHYVITLKAFNNVGEG  100 (113)
T ss_dssp             EEEECSCCSSCEECCEEEEECSSCBC
T ss_pred             EEEEeccccCcEEEEEEEEECCCcCC
Confidence            45689999999999999999887743

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.86  E-value=0.099  Score=33.21  Aligned_cols=23  Identities=13%  Similarity=-0.018  Sum_probs=19.0

Q ss_pred             HHHhCCCCCCcceeEEEEeeccC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSG   47 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g   47 (146)
                      +++.+|.|++.|.|.||+...++
T Consensus        57 ~~~~~L~p~t~Y~frVRa~~~~~   79 (95)
T d2b5ic1          57 FSLPSVDGQKRYTFRVRSRFNPL   79 (95)
T ss_dssp             EEECSCCTTSCEEEEEEEECCSS
T ss_pred             eEcCCCCCCCEEEEEEEEeeCCC
Confidence            56789999999999999865543

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.83  E-value=0.05  Score=34.47  Aligned_cols=24  Identities=8%  Similarity=-0.009  Sum_probs=20.6

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +++.+|+|++.|.|.|+++...|.
T Consensus        64 ~~~~~L~p~t~Y~frV~A~n~~G~   87 (100)
T d1cfba1          64 SFVVQMSPWANYTFRVIAFNKIGA   87 (100)
T ss_dssp             EEEEECCSSEEEEEEEEEEETTEE
T ss_pred             EEEecCCCCCEEEEEEEEEeCCcC
Confidence            467899999999999999887753

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=85.78  E-value=0.23  Score=37.42  Aligned_cols=42  Identities=17%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             eeEeeeecc--CCCCcchhH-HHHHHHHHHhhhcCCCCCcEEEecCCEEE
Q 043903           73 VVMSIKDFG--VGDGTTSTT-EVFRKAVRYVQAFGDKGGTQLNVPEGLWL  119 (146)
Q Consensus        73 ~~~nV~dfG--~gDG~tDdT-~A~q~Ai~aa~~~~~~gg~~V~IP~G~Yl  119 (146)
                      +++-|..=|  .+||..++- .-||+|++.|.     .|-+|+|.+|+|.
T Consensus        15 ~~~YVs~~Gsd~~~Gs~~~p~~tIq~Ai~~a~-----~GDtI~v~~GtY~   59 (400)
T d1ru4a_          15 RIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVN-----PGELILLKPGTYT   59 (400)
T ss_dssp             CEEEECTTCCTTCCSSSTTSCBCHHHHHHHCC-----TTCEEEECSEEEE
T ss_pred             CeEEECCCCcCCCCCCccccHHHHHHHHHhCC-----CcCEEEEcCceee
Confidence            566776667  778854321 12999999885     6789999999996

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.73  E-value=0.12  Score=32.92  Aligned_cols=25  Identities=16%  Similarity=0.121  Sum_probs=21.0

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGAE   49 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~~   49 (146)
                      +++.+|+|++.|.|.|+++...|.-
T Consensus        66 ~~i~~L~p~t~Y~~~V~A~N~~G~g   90 (105)
T d1cfba2          66 IVIADQPTFVKYLIKVVAINDRGES   90 (105)
T ss_dssp             EEECSCCSSCEEEEEEEEEETTEEC
T ss_pred             EEECCCCCCCEEEEEEEEEeCCcCC
Confidence            5689999999999999998777543

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.57  E-value=0.14  Score=32.57  Aligned_cols=21  Identities=10%  Similarity=-0.004  Sum_probs=17.9

Q ss_pred             HHHhCCCCCCcceeEEEEeec
Q 043903           25 IKILSLQITKKPVLSLRRVGF   45 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~   45 (146)
                      +++.+|.|++.|.|.||+...
T Consensus        69 ~~i~~L~~~t~Y~~rVrA~~~   89 (109)
T d1uc6a_          69 HTITDAYAGKEYIIQVAAKDN   89 (109)
T ss_dssp             EEETTCCSSSCEEEEEECCBS
T ss_pred             EEeCCCCCCCEEEEEEEEEEC
Confidence            467999999999999998553

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.29  E-value=0.26  Score=31.87  Aligned_cols=31  Identities=16%  Similarity=0.212  Sum_probs=23.5

Q ss_pred             HHhCCCCCCcceeEEEEeeccCCCCCcCCcce
Q 043903           26 KILSLQITKKPVLSLRRVGFSGAEGALFNPAT   57 (146)
Q Consensus        26 ~~~~L~p~t~y~~~vr~v~~~g~~~~~~~~~~   57 (146)
                      .+.+|+|++.|.|.||++...|. +..|..+.
T Consensus        75 ~~~~L~p~t~Y~~~V~A~n~~G~-G~~S~~v~  105 (117)
T d1wj3a_          75 AELVLPIKEDYIIEVKATTDGGD-GTSSEQIR  105 (117)
T ss_dssp             EEEECCCSSCEEEEEEEEESSCC-CCBCCCEE
T ss_pred             EEeeccCCcEEEEEEEEEcCCcc-CCCCCCEE
Confidence            46789999999999999988864 44444443

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.17  Score=32.35  Aligned_cols=24  Identities=17%  Similarity=0.041  Sum_probs=20.8

Q ss_pred             HHHhCCCCCCcceeEEEEeeccCC
Q 043903           25 IKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        25 ~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      +.+.+|.|.+.|.|.||+....|.
T Consensus        70 ~~~~~L~p~t~Y~~rVRa~~~~g~   93 (114)
T d2gysa2          70 LGPEHLMPSSTYVARVRTRLAPGS   93 (114)
T ss_dssp             ECTTTCCTTCEEEEEEEEEECTTS
T ss_pred             EEeCCCCCCcEEEEEEEEEeCCCC
Confidence            467899999999999999887764

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.47  E-value=0.16  Score=32.47  Aligned_cols=25  Identities=16%  Similarity=0.184  Sum_probs=21.5

Q ss_pred             HHHHhCCCCCCcceeEEEEeeccCC
Q 043903           24 LIKILSLQITKKPVLSLRRVGFSGA   48 (146)
Q Consensus        24 ~~~~~~L~p~t~y~~~vr~v~~~g~   48 (146)
                      .+.+.+|.|.+.|.|.||+....|.
T Consensus        66 ~~~i~~L~~~t~Y~~~V~a~~~~G~   90 (115)
T d1bqua2          66 SFTVQDLKPFTEYVFRIRCMKEDGK   90 (115)
T ss_dssp             EEEECSCCSSEEEEEEEEEEETTSC
T ss_pred             EEeeCCCccCcEEEEEEEEEeCCCc
Confidence            3567999999999999999988764

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.26  E-value=0.27  Score=31.07  Aligned_cols=20  Identities=10%  Similarity=0.029  Sum_probs=17.4

Q ss_pred             HHhCCCCCCcceeEEEEeec
Q 043903           26 KILSLQITKKPVLSLRRVGF   45 (146)
Q Consensus        26 ~~~~L~p~t~y~~~vr~v~~   45 (146)
                      ++.+|+|++.|.|+||+...
T Consensus        66 ~i~~L~p~t~Y~~rVRar~~   85 (105)
T d1erna2          66 VLSNLRGRTRYTFAVRARMA   85 (105)
T ss_dssp             EECSCCSSCEEEEEEEEEEC
T ss_pred             EEeCCCCCcEEEEEEEEEEC
Confidence            47899999999999998654