Citrus Sinensis ID: 043909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
RHTPYQSKRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEccccccccccccHHHHHcHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
rhtpyqskryvrsASHLNSQISEknkrkgkmGLQEEFEEYAEKAKtlpesttnenKLILYGLykqatvgpvnts
Flexible Loop (DISEMBL)
rhtpyqskryvrsashlnsqiseknkrkgkmgLQEEFEEYAEKaktlpesttnenKLILyglykqatvgpvnts
Low Complexity Region (SEG)
RHTPYQSKRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS
Disordered region (IsUnstruct)
*******************************************************KLILYGLYKQAT*******
Disordered Region (DISOPRED)
************************************FEEYAEKAKTLPESTTNENKLILYGLYKQATVGPV***
Disordered Region (DISEMBL)
RHTPYQSKRYVRSASHLNSQ***********GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQA********
Disordered Region (DISPRO)
*****QS****RS***********N****KMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATV******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RHTPYQSKRYVRSASHLNSQISEKNKRKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
O04066	90	Acyl-CoA-binding protein	N/A	no	0.594	0.488	0.909	4e-17
O22643	87	Acyl-CoA-binding protein	N/A	no	0.581	0.494	0.837	2e-14
Q39779	89	Acyl-CoA-binding protein	N/A	no	0.594	0.494	0.772	8e-14
Q39315	92	Acyl-CoA-binding protein	N/A	no	0.594	0.478	0.727	9e-12
P81625	40	Acyl-CoA-binding protein	N/A	no	0.540	1.0	0.8	6e-11
P57752	92	Acyl-CoA-binding domain-c	yes	no	0.594	0.478	0.704	8e-11
P81624	30	Acyl-CoA-binding protein	N/A	no	0.405	1.0	0.8	6e-07
Q20507	116	Acyl-CoA-binding protein	yes	no	0.594	0.379	0.437	0.0002
P07108	87	Acyl-CoA-binding protein	yes	no	0.540	0.459	0.5	0.0008
P0C8L7	89	Putative acyl-CoA-binding	N/A	no	0.594	0.494	0.477	0.0008

>sp|O04066|ACBP_RICCO Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+E+FEE+AEKAKTLPE+TTNENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLKEDFEEHAEKAKTLPENTTNENKLILYGLYKQATVGPVNTS 44

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.
Ricinus communis (taxid: 3988)

>sp|O22643|ACBP_FRIAG Acyl-CoA-binding protein OS=Fritillaria agrestis GN=ACABP PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 41/43 (95%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          M L+EEFEE+A KAKTLPEST+NENKLILYGLYKQ+TVGPV+T
Sbjct: 1  MALKEEFEEHAVKAKTLPESTSNENKLILYGLYKQSTVGPVDT 43

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Fritillaria agrestis (taxid: 64177)

>sp|Q39779|ACBP_GOSHI Acyl-CoA-binding protein OS=Gossypium hirsutum PE=3 SV=1

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 40/44 (90%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+EEFEE+AEK KTLP + +N++ LILYGLYKQATVGPVNTS
Sbjct: 1  MGLKEEFEEHAEKVKTLPAAPSNDDMLILYGLYKQATVGPVNTS 44

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Gossypium hirsutum (taxid: 3635)

>sp|Q39315|ACBP_BRANA Acyl-CoA-binding protein OS=Brassica napus PE=3 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 37/44 (84%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+E+FEE+AEK K L  S +NE+ LILYGLYKQATVGPV TS
Sbjct: 1  MGLKEDFEEHAEKVKKLTASPSNEDLLILYGLYKQATVGPVTTS 44

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Brassica napus (taxid: 3708)

>sp|P81625|ACBP2_DIGLA Acyl-CoA-binding protein 2 (Fragment) OS=Digitalis lanata PE=1 SV=2

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 37/40 (92%)

Query: 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPV 71
           L+EEFEE+AEKAKTLPE+T++ENKL LYGLYKQATVG V
Sbjct: 1  ALKEEFEEHAEKAKTLPENTSSENKLTLYGLYKQATVGNV 40

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Digitalis lanata (taxid: 49450)

>sp|P57752|ACBP6_ARATH Acyl-CoA-binding domain-containing protein 6 OS=Arabidopsis thaliana GN=ACBP6 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+EEFEE+AEK  TL E  +NE+ LILYGLYKQA  GPV+TS
Sbjct: 1  MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTS 44

Binds medium- and long-chain acyl-CoA esters with very high affinity. May function as an intracellular carrier of acyl-CoA esters. Confers resistance to cold and freezing. Interacts with phosphatidylcholine and derivatives, but not phosphatidic acid and lysophosphatidylcholine. May be involved in phospholipid metabolism.

Arabidopsis thaliana (taxid: 3702)

>sp|P81624|ACBP1_DIGLA Acyl-CoA-binding protein 1 (Fragment) OS=Digitalis lanata PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query: 32 GLQEEFEEYAEKAKTLPESTTNENKLILYG 61
           L++EFEE+AEKAKTLPE+T+NENKLILYG
Sbjct: 1  ALKDEFEEHAEKAKTLPENTSNENKLILYG 30

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Digitalis lanata (taxid: 49450)

>sp|Q20507|ACBP3_CAEEL Acyl-CoA-binding protein homolog 3 OS=Caenorhabditis elegans GN=acbp-3 PE=3 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)

Query: 31 MGLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS 74
          M LQE+F+   E  + LP+    +T+N+ KL  Y L+KQA++G VNT 
Sbjct: 1  MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNTD 48

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Caenorhabditis elegans (taxid: 6239)

>sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein OS=Homo sapiens GN=DBI PE=1 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EFE+ AE+ + L    ++E  L +YG YKQATVG +NT
Sbjct: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters. It is also able to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor.

Homo sapiens (taxid: 9606)

>sp|P0C8L7|ACBP_HYPDU Putative acyl-CoA-binding protein OS=Hypsibius dujardini PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          M ++E+F+  AE+ K L  S ++   L LY LYKQAT+G VNT 
Sbjct: 1  MSVEEQFKTSAEQVKKLKSSPSDTELLELYSLYKQATIGDVNTD 44

Binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters.

Hypsibius dujardini (taxid: 232323)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
19352190	87	Acyl-CoA-binding protein [Panax ginseng]	0.594	0.505	0.977	1e-16
32454286	90	acyl-CoA-binding protein [Tropaeolum maj	0.594	0.488	0.954	2e-16
428754000	91	acyl-CoA binding protein 6 [Vernicia for	0.594	0.483	0.954	2e-16
449456781	89	PREDICTED: acyl-CoA-binding protein-like	0.594	0.494	0.931	4e-16
284433772	92	acyl-CoA-binding protein [Jatropha curca	0.594	0.478	0.931	5e-16
91992436	92	acyl-CoA-binding protein [Jatropha curca	0.594	0.478	0.909	1e-15
224138380	90	predicted protein [Populus trichocarpa]	0.594	0.488	0.909	2e-15
118484826	90	unknown [Populus trichocarpa]	0.594	0.488	0.909	2e-15
3334112	90	RecName: Full=Acyl-CoA-binding protein;	0.594	0.488	0.909	2e-15
330318654	90	acyl-CoA-binding protein [Camellia sinen	0.594	0.488	0.886	2e-15

>gi|19352190|dbj|BAB85987.1| Acyl-CoA-binding protein [Panax ginseng]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/44 (97%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGLQEEFEE+AEKAKTLPESTTNENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLQEEFEEHAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 44

Source: Panax ginseng

Species: Panax ginseng

Genus: Panax

Family: Araliaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32454286|gb|AAP82942.1| acyl-CoA-binding protein [Tropaeolum majus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/44 (95%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGLQEEFEE+AEKAKTLPEST+NENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLQEEFEEHAEKAKTLPESTSNENKLILYGLYKQATVGPVNTS 44

Source: Tropaeolum majus

Species: Tropaeolum majus

Genus: Tropaeolum

Family: Tropaeolaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428754000|gb|AFZ62125.1| acyl-CoA binding protein 6 [Vernicia fordii]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/44 (95%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+EEFEEYAEKAKTLPE+TTNENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVNTS 44

Source: Vernicia fordii

Species: Vernicia fordii

Genus: Vernicia

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456781|ref|XP_004146127.1| PREDICTED: acyl-CoA-binding protein-like isoform 1 [Cucumis sativus] gi|449517937|ref|XP_004166000.1| PREDICTED: acyl-CoA-binding protein-like isoform 1 [Cucumis sativus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/44 (93%), Positives = 43/44 (97%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+E+FEEYAEKAKTLPESTTNENKLILYGLYKQATVGPV TS
Sbjct: 1  MGLKEDFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVTTS 44

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433772|gb|ADB85092.1| acyl-CoA-binding protein [Jatropha curcas]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/44 (93%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+EEFEEYAEKAKTLPE+TTNENKLILYGL+KQATVGPVNTS
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLFKQATVGPVNTS 44

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91992436|gb|ABE72959.1| acyl-CoA-binding protein [Jatropha curcas]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+E+FEEYAEKAKTLPE+TTNENKLILYGL+KQATVGPVNTS
Sbjct: 1  MGLKEDFEEYAEKAKTLPENTTNENKLILYGLFKQATVGPVNTS 44

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138380|ref|XP_002326588.1| predicted protein [Populus trichocarpa] gi|222833910|gb|EEE72387.1| predicted protein [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGLQEEF+E++EKAKTLPE+TTNENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLQEEFQEHSEKAKTLPENTTNENKLILYGLYKQATVGPVNTS 44

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484826|gb|ABK94280.1| unknown [Populus trichocarpa]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGLQEEF+E++EKAKTLPE+TTNENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLQEEFQEHSEKAKTLPENTTNENKLILYGLYKQATVGPVNTS 44

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3334112|sp|O04066.1|ACBP_RICCO RecName: Full=Acyl-CoA-binding protein; Short=ACBP gi|1938236|emb|CAA70200.1| acyl-CoA-binding protein [Ricinus communis]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+E+FEE+AEKAKTLPE+TTNENKLILYGLYKQATVGPVNTS
Sbjct: 1  MGLKEDFEEHAEKAKTLPENTTNENKLILYGLYKQATVGPVNTS 44

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318654|gb|AEC10987.1| acyl-CoA-binding protein [Camellia sinensis]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/44 (88%), Positives = 44/44 (100%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          MGL+E+FEE+AEKAKTLPESTTNE+KLILYGLYKQATVGP+NTS
Sbjct: 1  MGLKEDFEEHAEKAKTLPESTTNESKLILYGLYKQATVGPINTS 44

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2826180	92	ACBP6 "acyl-CoA-binding protei	0.594	0.478	0.704	3.5e-11
ZFIN|ZDB-GENE-050913-108	88	acbd7 "acyl-Coenzyme A binding	0.567	0.477	0.5	5.5e-06
UNIPROTKB|P07108	87	DBI "Acyl-CoA-binding protein"	0.540	0.459	0.5	1.5e-05
UNIPROTKB|F1LV02	86	Dbi "Acyl-CoA-binding protein"	0.540	0.465	0.525	1.5e-05
WB|WBGene00009818	116	acbp-3 [Caenorhabditis elegans	0.581	0.370	0.489	1.5e-05
ZFIN|ZDB-GENE-040718-392	392	zgc:92030 "zgc:92030" [Danio r	0.972	0.183	0.373	1.9e-05
MGI|MGI:94865	87	Dbi "diazepam binding inhibito	0.540	0.459	0.5	3.9e-05
UNIPROTKB|P12026	87	DBI "Acyl-CoA-binding protein"	0.540	0.459	0.475	5e-05
UNIPROTKB|P07107	87	DBI "Acyl-CoA-binding protein"	0.540	0.459	0.475	8.1e-05
UNIPROTKB|Q8WN94	87	DBI "Acyl-CoA-binding protein"	0.540	0.459	0.5	8.1e-05

TAIR|locus:2826180 ACBP6 "acyl-CoA-binding protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 31/44 (70%), Positives = 36/44 (81%)

Query:    31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
             MGL+EEFEE+AEK  TL E  +NE+ LILYGLYKQA  GPV+TS
Sbjct:     1 MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTS 44

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0031210 "phosphatidylcholine binding" evidence=IDA

GO:0050826 "response to freezing" evidence=IMP

GO:0009646 "response to absence of light" evidence=TAS

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0006869 "lipid transport" evidence=IDA

ZFIN|ZDB-GENE-050913-108 acbd7 "acyl-Coenzyme A binding domain containing 7" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query:    31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVN 72
             M L+ EF++YAE  K +    T++  L LYGLYKQA VG +N
Sbjct:     1 MTLKAEFDQYAEDVKKVKTRPTDQELLDLYGLYKQAVVGDIN 42

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P07108 DBI "Acyl-CoA-binding protein" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query:    34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
             Q EFE+ AE+ + L    ++E  L +YG YKQATVG +NT
Sbjct:     3 QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0030156 "benzodiazepine receptor binding" evidence=TAS

UNIPROTKB|F1LV02 Dbi "Acyl-CoA-binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query:    34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
             Q EF++ AE+ K L    T E  L+LY  +KQATVG VNT
Sbjct:     2 QAEFDKAAEEVKCLKSQPTEEEMLLLYSHFKQATVGDVNT 41

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

WB|WBGene00009818 acbp-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query:    31 MGLQEEFE---EYAEKA-KTLPESTTNENKLILYGLYKQATVGPVNT 73
             M LQE+F+   E  +K  KT P +T+N+ KL  Y L+KQA++G VNT
Sbjct:     1 MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNT 47

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

ZFIN|ZDB-GENE-040718-392 zgc:92030 "zgc:92030" [Danio rerio (taxid:7955)]

 Score = 108 (43.1 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query:     1 RH-TPYQSKRYVRSASHLNSQISEKNKRKGKMGLQ-EEFEEYAEKAKTLPESTTNENKLI 58
             +H +P++  R+VRS+        + +     MG   E+F +  +K  TL +   NE KL 
Sbjct:     6 KHVSPWRFARFVRSSKTAFIPCVQLHST-AVMGASVEDFNKAKDKLNTLKKDPGNEVKLK 64

Query:    59 LYGLYKQATVGPVNT 73
             +Y L+KQATVGP NT
Sbjct:    65 IYALFKQATVGPCNT 79

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

MGI|MGI:94865 Dbi "diazepam binding inhibitor" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 20/40 (50%), Positives = 26/40 (65%)

Query:    34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
             Q EF++ AE+ K L    T+E  L +Y  +KQATVG VNT
Sbjct:     3 QAEFDKAAEEVKRLKTQPTDEEMLFIYSHFKQATVGDVNT 42

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0001942 "hair follicle development" evidence=IMP

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006641 "triglyceride metabolic process" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008289 "lipid binding" evidence=IEA

GO:0014009 "glial cell proliferation" evidence=ISO

GO:0030156 "benzodiazepine receptor binding" evidence=ISO

GO:0031999 "negative regulation of fatty acid beta-oxidation" evidence=ISO

GO:0032228 "regulation of synaptic transmission, GABAergic" evidence=ISO

GO:0043292 "contractile fiber" evidence=ISO

GO:0043588 "skin development" evidence=IMP

GO:0046889 "positive regulation of lipid biosynthetic process" evidence=ISO

GO:0051281 "positive regulation of release of sequestered calcium ion into cytosol" evidence=ISO

UNIPROTKB|P12026 DBI "Acyl-CoA-binding protein" [Sus scrofa (taxid:9823)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query:    34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
             Q EFE+ AE+ K L     ++  L +Y  YKQATVG +NT
Sbjct:     3 QAEFEKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINT 42

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|P07107 DBI "Acyl-CoA-binding protein" [Bos taurus (taxid:9913)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query:    34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
             Q EF++ AE+ K L     +E  L +Y  YKQATVG +NT
Sbjct:     3 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINT 42

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

UNIPROTKB|Q8WN94 DBI "Acyl-CoA-binding protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query:    34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
             Q EFE+ AE+ K L     +   L +Y  YKQATVG VNT
Sbjct:     3 QAEFEKAAEEVKNLKTKPADAEMLFIYSHYKQATVGDVNT 42

GO:0000062 "fatty-acyl-CoA binding" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=NAS

GO:0030547 "receptor inhibitor activity" evidence=NAS

GO:2000272 "negative regulation of receptor activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04066	ACBP_RICCO	No assigned EC number	0.9090	0.5945	0.4888	N/A	no
P57752	ACBP6_ARATH	No assigned EC number	0.7045	0.5945	0.4782	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_290324 SubName- Full=Putative uncharacterized protein; (90 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	74
cd00435	85	cd00435, ACBP, Acyl CoA binding protein (ACBP) bin	9e-15
pfam00887	87	pfam00887, ACBP, Acyl CoA binding protein	6e-13
COG4281	87	COG4281, ACB, Acyl-CoA-binding protein [Lipid meta	2e-05

>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

 Score = 62.0 bits (151), Expect = 9e-15
 Identities = 27/42 (64%), Positives = 28/42 (66%)

Query: 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          LQEEFE  AEK K L    +NE KL LY LYKQATVG  NT 
Sbjct: 1  LQEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTE 42

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected. Length = 85

>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein

 Score = 57.6 bits (140), Expect = 6e-13
 Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 33 LQEEFEEYAEKAKTLPES--TTNENKLILYGLYKQATVGPVNTS 74
          L+EEFE   +  K LP+    +NE KL LY LYKQAT G VNT 
Sbjct: 1  LEEEFEAAVKFVKKLPKDGRPSNEEKLKLYALYKQATEGDVNTP 44

Length = 87

>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism]

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          L   FE+     K L E  +N+  L LY L+KQ +VG  + 
Sbjct: 2  LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDG 42

Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
cd00435	85	ACBP Acyl CoA binding protein (ACBP) binds thiol e	99.64
PTZ00458	90	acyl CoA binding protein; Provisional	99.64
PF00887	87	ACBP: Acyl CoA binding protein; InterPro: IPR00058	99.58
KOG0817	142	consensus Acyl-CoA-binding protein [Lipid transpor	99.58
COG4281	87	ACB Acyl-CoA-binding protein [Lipid metabolism]	99.34
KOG3878	469	consensus Protein involved in maintenance of Golgi	86.41

>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity

Probab=99.64  E-value=1.8e-16  Score=100.32  Aligned_cols=42  Identities=64%  Similarity=0.826  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |++.|++|+++|++++..+++|++|+|||||||||+|||+.+
T Consensus         1 ~~~~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~   42 (85)
T cd00435           1 LQEEFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTE   42 (85)
T ss_pred             ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCC
Confidence            478999999999999999999999999999999999999864

Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.

>PTZ00458 acyl CoA binding protein; Provisional

Probab=99.64  E-value=2e-16  Score=101.77  Aligned_cols=41  Identities=41%  Similarity=0.555  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhcCCC--CCCHHHHHHHHhhhcccccCCCCCC
Q 043909           34 QEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        34 ~e~F~~A~~~vk~l~~--~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      .+.|++|+++|+.++.  .+++|++|+|||||||||+|||++|
T Consensus         2 ~~~F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~   44 (90)
T PTZ00458          2 ADLFEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIK   44 (90)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCC
Confidence            5789999999998877  7999999999999999999999864

>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []

Probab=99.58  E-value=1.1e-15  Score=95.53  Aligned_cols=42  Identities=50%  Similarity=0.736  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHhcCCC--CCCHHHHHHHHhhhcccccCCCCCC
Q 043909           33 LQEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~~--~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |+++|+.|+++|+.++.  .+++|++|+|||||||||+|||+++
T Consensus         1 Le~~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~   44 (87)
T PF00887_consen    1 LEEEFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTP   44 (87)
T ss_dssp             HHHHHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-
T ss_pred             CHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCC
Confidence            68999999999999999  9999999999999999999999853

ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....

>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]

Probab=99.58  E-value=1.6e-15  Score=104.51  Aligned_cols=44  Identities=52%  Similarity=0.715  Sum_probs=41.9

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        31 m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      +.+...|+.|++.|++++..+++|++|.|||||||||+|||++|
T Consensus         3 ~~~~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~   46 (142)
T KOG0817|consen    3 ATLEAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTP   46 (142)
T ss_pred             chHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCC
Confidence            45789999999999999999999999999999999999999985

>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]

Probab=99.34  E-value=1.2e-12  Score=84.06  Aligned_cols=41  Identities=37%  Similarity=0.589  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909           33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT   73 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~   73 (74)
                      +...|+.|...|+.++.+|+++++|+||+||||+|+||+++
T Consensus         2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~   42 (87)
T COG4281           2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDG   42 (87)
T ss_pred             hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCC
Confidence            56789999999999999999999999999999999999986

>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.41  E-value=1.6  Score=35.11  Aligned_cols=44  Identities=30%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             CCChHHHHHHHHHHHhcCCC---CCCHHHHHHHHhhhcccccCCCCC
Q 043909           30 KMGLQEEFEEYAEKAKTLPE---STTNENKLILYGLYKQATVGPVNT   73 (74)
Q Consensus        30 ~m~l~e~F~~A~~~vk~l~~---~~s~e~kL~LYglYKQAT~Gdcn~   73 (74)
                      -..|++-+..|+.+-|....   .++-|++|+|-+|-||+-.|+.|+
T Consensus        29 Gf~LeElY~LA~~fyKe~~GKa~h~~YEd~lKLial~kQv~~Gp~n~   75 (469)
T KOG3878|consen   29 GFPLEELYRLAFTFYKENSGKAIHLSYEDNLKLIALKKQVALGPFNT   75 (469)
T ss_pred             CCCHHHHHHHHHHHHHhccCCccCCChhhhhhhhhhHhhhhcCCCCc
Confidence            35689999999999986655   589999999999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
2cb8_A	87	High Resolution Crystal Structure Of Liganded Human		6e-05
2fj9_A	86	High Resolution Crystal Structure Of The Unliganded		6e-05
2cqu_A	116	Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co		4e-04
1hb6_A	86	Structure Of Bovine Acyl-Coa Binding Protein In Ort		5e-04
2fdq_A	86	Crystal Structure Of Acbp From Armadillo Harderian		5e-04

>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp Length = 87

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EFE+ AE+ + L    ++E  L +YG YKQATVG +NT
Sbjct: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42

>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human Acbp Length = 86

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EFE+ AE+ + L    ++E  L +YG YKQATVG +NT
Sbjct: 2  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 41

>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVN 72
          Q++FE    + K L +   NE KL LY LYKQAT GP N
Sbjct: 17 QKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCN 55

>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Orthorhombic Crystal Form Length = 86

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EF++ AE+ K L     +E  L +Y  YKQATVG +NT
Sbjct: 2  QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINT 41

>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland Length = 86

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EF++ AE+ K L     ++  L +Y  YKQATVG +NT
Sbjct: 2  QAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINT 41

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	4e-13
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	2e-12
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	8e-12
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	2e-10
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	2e-09
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	2e-09
2lbb_A	96	Acyl COA binding protein; protein binding, structu	4e-09
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	9e-09
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	2e-08
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	4e-08

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89

 Score = 57.6 bits (139), Expect = 4e-13
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          M LQ +F+  AE  + L     +     LYGLYKQA VG +N 
Sbjct: 2  MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINI 44

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87

 Score = 55.6 bits (134), Expect = 2e-12
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EFE+ AE+ + L    ++E  L +YG YKQATVG +NT
Sbjct: 3  QAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINT 42

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86

 Score = 54.1 bits (130), Expect = 8e-12
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          + + FEE A+    LP   + +  L LY LYKQATVG  +  
Sbjct: 1  VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKE 42

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 51.2 bits (122), Expect = 2e-10
 Identities = 21/48 (43%), Positives = 25/48 (52%)

Query: 27 RKGKMGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS 74
          R      Q++FE    + K L +   NE KL LY LYKQAT GP N  
Sbjct: 10 RTAMRASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMP 57

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 18/42 (42%), Positives = 22/42 (52%)

Query: 32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          GL E FE+ A   + L +  + E  L LY  YKQ  VG  NT
Sbjct: 7  GLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNT 48

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89

 Score = 48.3 bits (115), Expect = 2e-09
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 33 LQEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS 74
          + + FEE       LP   +  NE KL LY  YKQ+T+G  N  
Sbjct: 2  MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK 45

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96

 Score = 47.6 bits (113), Expect = 4e-09
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 34 QEEFEEYAEKAKTLPEST-TNENKLILYGLYKQATVGPVNT 73
           ++F+   +          +N++KL  Y  YKQATVG  N 
Sbjct: 11 ADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNK 51

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119

 Score = 47.0 bits (111), Expect = 9e-09
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 11 VRSASHLNSQISEKNKRKGKMG-LQEEFEEYAEKAKTLPES----TTNENKLILYGLYKQ 65
          +    H +S +    +        +  FE   +  ++LP++     TNE  L  Y  YKQ
Sbjct: 1  MHHHHHHSSGVDLGTENLYFQSMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQ 60

Query: 66 ATVGPVNTS 74
          AT GP   S
Sbjct: 61 ATEGPCKLS 69

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106

 Score = 45.8 bits (108), Expect = 2e-08
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 33 LQEEFEEYAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTS 74
           Q++F+      + LP++     + E  L  Y  YKQAT+GP    
Sbjct: 8  CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVP 53

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106

 Score = 45.3 bits (107), Expect = 4e-08
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 33 LQEEFEEYAEKAKTLPES----TTNENKLILYGLYKQATVGPVNTS 74
           + +F++  E  ++LP+      T + +L  Y  +KQATVG VN S
Sbjct: 4  SKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNIS 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
3epy_A	89	Acyl-COA-binding domain-containing protein 7; acyl	99.76
1st7_A	86	ACBP, acyl-COA-binding protein; four helix bundle,	99.71
1hbk_A	89	ACBP, acyl-COA binding protein; fatty acid metabol	99.7
3fp5_A	106	Acyl-COA binding protein; ACBP, cacao disease, fat	99.69
2cb8_A	87	Acyl-COA-binding protein; acyl-coenzyme A binding	99.68
2cop_A	109	Acyl-coenzyme A binding domain containing 6; acyl	99.67
2cqu_A	116	Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi	99.66
2wh5_A	106	Acyl-COA-binding domain-containing protein 4; alte	99.62
2lbb_A	96	Acyl COA binding protein; protein binding, structu	99.6
3flv_A	119	Acyl-COA-binding domain-containing protein 5; lipi	99.6
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	90.25

>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1

Probab=99.76  E-value=3.1e-19  Score=113.20  Aligned_cols=44  Identities=41%  Similarity=0.643  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           31 MGLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        31 m~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |+|+++|++|++.|+.++..|++|++|+|||||||||+|||++|
T Consensus         2 m~L~~~F~~A~~~vk~l~~~p~~~~~L~lYalyKQAt~Gd~~~~   45 (89)
T 3epy_A            2 MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIA   45 (89)
T ss_dssp             CHHHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             CcHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHhhCCCCCC
Confidence            78999999999999999999999999999999999999999975

>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=4.4e-18  Score=106.84  Aligned_cols=42  Identities=40%  Similarity=0.619  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |+++|++|+++|+.++..|++|++|+|||||||||+|||++|
T Consensus         1 l~~~F~~A~~~v~~l~~~~~~~~~L~lYalyKQAt~Gd~~~~   42 (86)
T 1st7_A            1 VSQLFEEKAKAVNELPTKPSTDELLELYALYKQATVGDNDKE   42 (86)
T ss_dssp             CHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHCSCCCC
T ss_pred             CHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHHHhhCCCCCC
Confidence            578999999999999999999999999999999999999975

>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1

Probab=99.70  E-value=1.1e-17  Score=105.62  Aligned_cols=42  Identities=40%  Similarity=0.544  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHhcCC--CCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           33 LQEEFEEYAEKAKTLP--ESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~--~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |+++|++|+++|+.++  ..|++|++|+|||||||||+|||+++
T Consensus         2 l~~~F~~A~~~v~~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~   45 (89)
T 1hbk_A            2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK   45 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             hHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHhhcCCCCCC
Confidence            6899999999999999  89999999999999999999999974

>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0

Probab=99.69  E-value=1.3e-17  Score=108.93  Aligned_cols=44  Identities=36%  Similarity=0.580  Sum_probs=41.5

Q ss_pred             CChHHHHHHHHHHHhcCCC----CCCHHHHHHHHhhhcccccCCCCCC
Q 043909           31 MGLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        31 m~l~e~F~~A~~~vk~l~~----~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |+++++|++|+++|+.++.    .|++|++|+|||||||||+|||+++
T Consensus         2 ~~~~~~F~~A~~~vk~l~~~g~~~ps~~~~L~LYalyKQAt~Gd~~~~   49 (106)
T 3fp5_A            2 HMSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNIS   49 (106)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSSSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             CchHHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence            7899999999999999985    7999999999999999999999975

>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A

Probab=99.68  E-value=2.8e-17  Score=103.56  Aligned_cols=42  Identities=48%  Similarity=0.727  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           33 LQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      .+++|++|++.|+.++..|++|++|+|||||||||+|||+++
T Consensus         2 ~~~~F~~A~~~vk~l~~~~~~~~~L~lYalyKQAt~Gd~~~~   43 (87)
T 2cb8_A            2 SQAEFEKAAEEVRHLKTKPSDEEMLFIYGHYKQATVGDINTE   43 (87)
T ss_dssp             CHHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             cHHHHHHHHHHHHHccCCcCHHHHHHHHHHHHhhhhCCCCCC
Confidence            378999999999999999999999999999999999999974

>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3.4e-17  Score=107.06  Aligned_cols=43  Identities=42%  Similarity=0.565  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      +|+++|++|+++|+.++..+++|++|+|||||||||+|||+++
T Consensus         7 ~l~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~   49 (109)
T 2cop_A            7 GLAELFEKAAAHLQGLIQVASREQLLYLYARYKQVKVGNCNTP   49 (109)
T ss_dssp             CSHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHhhcCCCCCC
Confidence            4799999999999999999999999999999999999999974

>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=7.5e-17  Score=106.79  Aligned_cols=43  Identities=47%  Similarity=0.648  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      .++++|++|++.|+.++..|++|++|+|||||||||+|||++|
T Consensus        15 ~~~~~F~~A~~~vk~l~~~p~~~~~L~LYaLyKQAt~Gd~~~~   57 (116)
T 2cqu_A           15 ASQKDFENSMNQVKLLKKDPGNEVKLKLYALYKQATEGPCNMP   57 (116)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCCHHHHHHHHHHHTTTTTCSCCSC
T ss_pred             HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence            4799999999999999999999999999999999999999964

>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}

Probab=99.62  E-value=1.7e-16  Score=103.54  Aligned_cols=43  Identities=33%  Similarity=0.543  Sum_probs=38.8

Q ss_pred             ChHHHHHHHHHHHhcCCC----CCCHHHHHHHHhhhcccccCCCCCC
Q 043909           32 GLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        32 ~l~e~F~~A~~~vk~l~~----~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      .|+++|++|+++|+.++.    .|++|++|+|||||||||+|||+++
T Consensus         7 ~l~~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~   53 (106)
T 2wh5_A            7 DCQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVP   53 (106)
T ss_dssp             --CHHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSC
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCC
Confidence            367999999999999987    7999999999999999999999864

>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}

Probab=99.60  E-value=1e-16  Score=103.16  Aligned_cols=41  Identities=32%  Similarity=0.536  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhcCC-CCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           34 QEEFEEYAEKAKTLP-ESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        34 ~e~F~~A~~~vk~l~-~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      .++|++|++.|++++ ..|++|++|+|||||||||+|||+++
T Consensus        11 ~~~F~~A~~~vk~l~~~~ps~~~~L~LYaLyKQAt~Gd~~~~   52 (96)
T 2lbb_A           11 ADDFDAAVKYVSNTTTMMASNDDKLCFYKYYKQATVGDCNKP   52 (96)
T ss_dssp             SSTHHHHHHHHHHCCCSCCCTTTTTHHHHHHHHTTTSSCCCC
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence            578999999999999 99999999999999999999999974

>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}

Probab=99.60  E-value=1.8e-16  Score=105.64  Aligned_cols=43  Identities=40%  Similarity=0.566  Sum_probs=39.7

Q ss_pred             ChHHHHHHHHHHHhcCCC----CCCHHHHHHHHhhhcccccCCCCCC
Q 043909           32 GLQEEFEEYAEKAKTLPE----STTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        32 ~l~e~F~~A~~~vk~l~~----~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      .|+++|++|+++|+.++.    .|++|++|+|||||||||+|||++|
T Consensus        23 dLe~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT~Gd~~~~   69 (119)
T 3flv_A           23 MHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLS   69 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             HHHHHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence            378999999999999875    6899999999999999999999975

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=90.25  E-value=0.29  Score=32.16  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=35.5

Q ss_pred             ChHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCC
Q 043909           32 GLQEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT   73 (74)
Q Consensus        32 ~l~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~   73 (74)
                      .+.--|..+...|-...-..+.|+.+.|.||..||..||++.
T Consensus        17 ~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~~Gd~~~   58 (206)
T 1mix_A           17 QLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNE   58 (206)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred             HHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhheecCCCc
Confidence            345567888888887777889999999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1hb6a_	86	a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t	7e-12
d1hbka_	89	a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium	3e-10

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (128), Expect = 7e-12
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNT 73
          Q EF++ AE+ K L     +E  L +Y  YKQATVG +NT
Sbjct: 2  QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINT 41

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

 Score = 49.1 bits (117), Expect = 3e-10
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 33 LQEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS 74
          + + FEE       LP   +  NE KL LY  YKQ+T+G  N  
Sbjct: 2  MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1hb6a_	86	Acyl-CoA binding protein {Cow (Bos taurus) [TaxId:	99.64
d1hbka_	89	Acyl-CoA binding protein {Plasmodium falciparum [T	99.61

>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=5.4e-17  Score=100.68  Aligned_cols=41  Identities=46%  Similarity=0.701  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHhhhcccccCCCCCC
Q 043909           34 QEEFEEYAEKAKTLPESTTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        34 ~e~F~~A~~~vk~l~~~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      +++|+.|++.|+.++..++++++|+|||||||||+|||+++
T Consensus         2 ~~~F~~A~~~v~~~~~~~~~~~~L~LYalyKQat~Gd~~~~   42 (86)
T d1hb6a_           2 QAEFDKAAEEVKHLKTKPADEEMLFIYSHYKQATVGDINTE   42 (86)
T ss_dssp             HHHHHHHHHHGGGCSSCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHhcCCCCCC
Confidence            68999999999999999999999999999999999999875

>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.61  E-value=1.6e-16  Score=99.25  Aligned_cols=42  Identities=40%  Similarity=0.569  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHhcCCC--CCCHHHHHHHHhhhcccccCCCCCC
Q 043909           33 LQEEFEEYAEKAKTLPE--STTNENKLILYGLYKQATVGPVNTS   74 (74)
Q Consensus        33 l~e~F~~A~~~vk~l~~--~~s~e~kL~LYglYKQAT~Gdcn~p   74 (74)
                      |++.|++|+++|+.++.  .+|++++|+|||||||||+|||+++
T Consensus         2 L~~~F~~A~~~v~~~~~~~~~~~~~~L~lY~lyKQat~G~~~~~   45 (89)
T d1hbka_           2 MAQVFEECVSFINGLPRTINLPNELKLDLYKYYKQSTIGNCNIK   45 (89)
T ss_dssp             HHHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTCSCCSC
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence            68999999999998876  4789999999999999999999875