Citrus Sinensis ID: 043912

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
wwrghvtlRTLHLLSIGQLASLTFAATNFTSSFIanlgvdapvtqSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNflankayqftsitsvtllDGCTIAWALILTRLLLGtrysplklfgaGICMLGLCVCSSMFFFQVFQDLYWAIYLSLlgpcsmlsfsLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Flexible Loop (DISEMBL)
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Low Complexity Region (SEG)
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Disordered region (IsUnstruct)
*WRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHF***
Disordered Region (DISOPRED)
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFF*******YWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Disordered Region (DISEMBL)
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Disordered Region (DISPRO)
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDHFSFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q8IXU6	374	Solute carrier family 35	yes	no	0.921	0.628	0.318	1e-23
Q5T1Q4	408	Solute carrier family 35	no	no	0.905	0.566	0.318	8e-23
Q7TML3	375	Solute carrier family 35	yes	no	0.937	0.637	0.321	9e-23
Q8BGK5	408	Solute carrier family 35	no	no	0.905	0.566	0.322	5e-22
Q0V9U2	391	Solute carrier family 35	no	no	0.905	0.590	0.304	9e-20
O59785	505	Uncharacterized solute ca	yes	no	0.874	0.441	0.253	2e-10

>sp|Q8IXU6|S35F2_HUMAN Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 19/254 (7%)

Query: 7   TLRTLHLLSIGQLASLTFAATNFTSSFIANL-GVDAPVTQSAFSYFTLALVYGGILLYRR 65
           T   L  +++GQ+ SL    T  TS ++A    V+ P+ QS  +Y  L L+Y  +L +R 
Sbjct: 36  TWNILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRS 95

Query: 66  QR------LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119
                   L+  W+ Y+LLG  D++ N++  +AYQ+T++TSV LLD   I   + L+  +
Sbjct: 96  GSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFI 155

Query: 120 LGTRYSPLKLFGAGICMLGLCVCSSMFFFQVF--------QDLYWAIYLSLLGPCSMLSF 171
           L  RY  +      +C+LG+    +M    +          D+     L LLG  S+ + 
Sbjct: 156 LHARYRVIHFIAVAVCLLGV---GTMVGADILAGREDNSGSDVLIGDILVLLG-ASLYAI 211

Query: 172 SLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVS 231
           S    EY VKK  R E + M+G++G ++S IQL ++E K +  + W   I L FV +A+ 
Sbjct: 212 SNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALC 271

Query: 232 CFMFYTLATFVLKV 245
            F  Y+    V+KV
Sbjct: 272 MFCLYSFMPLVIKV 285

Putative solute transporter.
Homo sapiens (taxid: 9606)

>sp|Q5T1Q4|S35F1_HUMAN Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2

 Score =  107 bits (267), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/242 (31%), Positives = 125/242 (51%), Gaps = 11/242 (4%)

Query: 14  LSIGQLASLTFAATNFTSSFIA-NLGVDAPVTQSAFSYFTLALVYGGILLYRRQR----- 67
           +++GQ+ SL       TS +++ +   + PV QS  +Y  L LVY   L  R+       
Sbjct: 64  VALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLA 123

Query: 68  -LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
            L+  W+ Y++LG +DL+ N+L  KAYQ+T++TS+ LLD   I   ++L+   L  RY  
Sbjct: 124 ILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKA 183

Query: 127 LKLFGAGICMLGL-CVCSSMFFFQVFQ---DLYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182
           +   G  +C+LG+ C+  +       Q   +      L +LG  ++   S    EY ++ 
Sbjct: 184 VHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYIIRT 243

Query: 183 NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFV 242
             RVE + MIG++G   S IQL+++E K L  V W   I L +VG++   F  Y+    V
Sbjct: 244 LSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVV 303

Query: 243 LK 244
           +K
Sbjct: 304 IK 305

Putative solute transporter.

Homo sapiens (taxid: 9606)

>sp|Q7TML3|S35F2_MOUSE Solute carrier family 35 member F2 OS=Mus musculus GN=Slc35f2 PE=2 SV=2

 Score =  107 bits (267), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 19/258 (7%)

Query: 3   RGHVTLRTLHLLSIGQLASLTFAATNFTSSFIAN-LGVDAPVTQSAFSYFTLALVYGGIL 61
           R   T   L  +++GQ+ SL    T  TS ++A    V+ P+ QS  +Y  L LVY  +L
Sbjct: 32  RKLFTWDILKTIALGQMLSLCICGTAITSQYLAEKYRVNTPMLQSFINYCLLFLVYTLML 91

Query: 62  LYRR------QRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALIL 115
            ++       + L+  W+ Y LLG  D++ N+L  +AYQ+T++TSV LLD   I   + L
Sbjct: 92  AFQSGSDNLLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMAL 151

Query: 116 TRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVF--------QDLYWAIYLSLLGPCS 167
           +  +L  RY  +      +C+LG+    +M    +          D+     L LLG  S
Sbjct: 152 SWFILRARYKVIHFIAVFVCLLGV---GTMVGADILAGREDNSGSDVLIGDILVLLG-AS 207

Query: 168 MLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVG 227
           + + S    EY VKK  R E + M+G++G ++S IQL ++E K +  ++W   I L FV 
Sbjct: 208 LYAVSNVCEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIARIQWDWKIALLFVA 267

Query: 228 YAVSCFMFYTLATFVLKV 245
           +A+  F  Y+    V+KV
Sbjct: 268 FALCMFCLYSFMPLVIKV 285

Putative solute transporter.

Mus musculus (taxid: 10090)

>sp|Q8BGK5|S35F1_MOUSE Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 11/242 (4%)

Query: 14  LSIGQLASLTFAATNFTSSFIA-NLGVDAPVTQSAFSYFTLALVYGGILLYRRQR----- 67
           +++GQ+ SL       TS ++A +   + PV QS  +Y  L LVY   L  R+       
Sbjct: 64  VALGQVLSLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLA 123

Query: 68  -LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
            L+  W+ Y++LG +DL+ N+L  KAYQ+T++TSV LLD   I   ++L+   L  RY  
Sbjct: 124 ILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRYKA 183

Query: 127 LKLFGAGICMLGL-CVCSSMFFFQVFQ---DLYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182
           +   G  +C+LG+ C+  +       Q   +      L +LG  ++   S    E  ++ 
Sbjct: 184 VHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEESIIRT 243

Query: 183 NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFV 242
             RVE + MIG++G   S IQL+++E K L  V W   I L +VG++   F  Y+    V
Sbjct: 244 LSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVV 303

Query: 243 LK 244
           +K
Sbjct: 304 IK 305

Putative solute transporter.

Mus musculus (taxid: 10090)

>sp|Q0V9U2|S35F2_XENTR Solute carrier family 35 member F2 OS=Xenopus tropicalis GN=slc35f2 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 15/246 (6%)

Query: 14  LSIGQLASLTFAATNFTSSFIA-NLGVDAPVTQSAFSYFTLALVYGGILLYRRQR----- 67
           +++GQ+ SL       TS +++ +   + P+ QS  +Y  L LVY   L  R+       
Sbjct: 43  VALGQVLSLLICGIRLTSKYLSEDFHANTPLFQSFLNYILLFLVYTTTLAVRQGEENLLA 102

Query: 68  -LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
            L+  W+ Y+ LG +D++  +L  KA+Q+T+  S+ LL+   I   ++L+   L  RY  
Sbjct: 103 ILKRRWWKYMFLGIIDIEATYLVVKAHQYTTFISIQLLNCFVIPVVILLSWFFLLVRYKV 162

Query: 127 LKLFGAGICMLGL-CVCSSMFFF--QVFQDLYWAIY-----LSLLGPCSMLSFSLQNLEY 178
           L   GA  C+LG+ C+  +      Q   D Y         + +LG  ++   S    EY
Sbjct: 163 LHFIGAIACILGIGCMAGADVLMGRQQKGDFYPGDSKLIGDVLVLGGATLYGISSVCQEY 222

Query: 179 FVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTL 238
            V+   RVE++ MIG++G   S IQL+++E K L  V W   I L +VG+    F  Y+ 
Sbjct: 223 IVRNLSRVELLGMIGLFGSFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFTACMFGLYSF 282

Query: 239 ATFVLK 244
              V+K
Sbjct: 283 MPVVIK 288

Putative solute transporter.

Xenopus tropicalis (taxid: 8364)

>sp|O59785|YCN8_SCHPO Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC320.08 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 121/245 (49%), Gaps = 22/245 (8%)

Query: 16  IGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYR---RQRLQV-- 70
           +GQ+ SL   ATN  + +++ +  + P  Q+   Y  L LVY    ++R   ++  ++  
Sbjct: 147 LGQVLSLCITATNTFNGYMSGIS-NIPAFQTFLVYALLTLVYTPYTVFRMGFKKYFEMIF 205

Query: 71  -SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKL 129
              + Y++  F D++GN+    AYQ+T++ S +LLD       +IL+ + L  RY   ++
Sbjct: 206 RHGWKYIIFAFFDVEGNYFVVLAYQYTNMLSASLLDSWATVAVVILSFIFLKVRYHWSQI 265

Query: 130 FGAGICMLGLC--VCSSMFFFQVFQDLYWAI-------YLSLLGPCSMLSFSLQNLEYFV 180
            G   C+ GL   V S +    + +  Y A+       Y+ +   C  +S +L+  EYF 
Sbjct: 266 LGVVACIGGLVLLVVSDV----ISRGDYSAVNPGLGDGYMIIGATCYGVSNTLE--EYFA 319

Query: 181 KKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLAT 240
            K     V+  + +YG ++S IQ  + +   L  + W++++     G+ +  F+ Y+LA 
Sbjct: 320 SKLPLYVVIGQLSLYGSIISIIQTFIFDRHHLYTLHWTSEMGGYLAGFILVMFLLYSLAP 379

Query: 241 FVLKV 245
            + ++
Sbjct: 380 ILFRM 384

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
359481996	352	PREDICTED: solute carrier family 35 memb	0.952	0.690	0.580	2e-70
297740093	337	unnamed protein product [Vitis vinifera]	0.960	0.727	0.580	5e-70
255575633	340	conserved hypothetical protein [Ricinus	0.956	0.717	0.560	2e-63
297740094	337	unnamed protein product [Vitis vinifera]	0.960	0.727	0.536	2e-63
359481998	673	PREDICTED: solute carrier family 35 memb	0.960	0.364	0.536	3e-63
357511003	363	Solute carrier family 35 member F1 [Medi	0.941	0.661	0.525	1e-55
224134462	267	predicted protein [Populus trichocarpa]	0.8	0.764	0.568	5e-54
357511005	349	Solute carrier family 35 member F2 [Medi	0.941	0.687	0.511	6e-54
297740095	356	unnamed protein product [Vitis vinifera]	0.956	0.685	0.467	3e-51
242088093	347	hypothetical protein SORBIDRAFT_09g02187	0.870	0.639	0.512	8e-51

>gi|359481996|ref|XP_002276979.2| PREDICTED: solute carrier family 35 member F1-like [Vitis vinifera]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 187/248 (75%), Gaps = 5/248 (2%)

Query: 1   WWRGH-VTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGG 59
           WWR H + LRTL++L +GQ+ S   A  +F+SSFIA+LGVDAP+TQS F+Y +LALVYG 
Sbjct: 21  WWRSHGILLRTLYVLFLGQVVSFVLAVASFSSSFIADLGVDAPLTQSFFTYLSLALVYGS 80

Query: 60  ILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119
           ILLYRRQ+L++SWYWYL LGFVD+QGN+L NKAYQ++SITSVTLLD  TI W +ILT + 
Sbjct: 81  ILLYRRQKLRISWYWYLFLGFVDVQGNYLVNKAYQYSSITSVTLLDCWTIPWVIILTWIF 140

Query: 120 LGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--E 177
           LGTRYS  + FGA +C++GL +   +       D    +   +L     L F+L N+  E
Sbjct: 141 LGTRYSLWQFFGAALCIVGLGLV--LLSDAGVGDGSRPLLGDILVIAGTLFFALSNVGEE 198

Query: 178 YFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYT 237
           + VKK DRVEVV MIG++GLLVS  ++S++ELKSLE V+WSTDIILGFVGYAVS F+FYT
Sbjct: 199 FCVKKKDRVEVVTMIGIFGLLVSVCEISIMELKSLESVEWSTDIILGFVGYAVSTFLFYT 258

Query: 238 LATFVLKV 245
           +  F+L++
Sbjct: 259 IVPFLLQI 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740093|emb|CBI30275.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 144/248 (58%), Positives = 186/248 (75%), Gaps = 3/248 (1%)

Query: 1   WWRGH-VTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGG 59
           WWR H + LRTL++L +GQ+ S   A  +F+SSFIA+LGVDAP+TQS F+Y +LALVYG 
Sbjct: 4   WWRSHGILLRTLYVLFLGQVVSFVLAVASFSSSFIADLGVDAPLTQSFFTYLSLALVYGS 63

Query: 60  ILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119
           ILLYRRQ+L++SWYWYL LGFVD+QGN+L NKAYQ++SITSVTLLD  TI W +ILT + 
Sbjct: 64  ILLYRRQKLRISWYWYLFLGFVDVQGNYLVNKAYQYSSITSVTLLDCWTIPWVIILTWIF 123

Query: 120 LGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--E 177
           LGTRYS  + FGA +C++GL +           D    +   +L     L F+L N+  E
Sbjct: 124 LGTRYSLWQFFGAALCIVGLGLVLLSDAGVGGGDGSRPLLGDILVIAGTLFFALSNVGEE 183

Query: 178 YFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYT 237
           + VKK DRVEVV MIG++GLLVS  ++S++ELKSLE V+WSTDIILGFVGYAVS F+FYT
Sbjct: 184 FCVKKKDRVEVVTMIGIFGLLVSVCEISIMELKSLESVEWSTDIILGFVGYAVSTFLFYT 243

Query: 238 LATFVLKV 245
           +  F+L++
Sbjct: 244 IVPFLLQI 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575633|ref|XP_002528716.1| conserved hypothetical protein [Ricinus communis] gi|223531810|gb|EEF33628.1| conserved hypothetical protein [Ricinus communis]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 178/246 (72%), Gaps = 2/246 (0%)

Query: 1   WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI 60
           WW+ H TL+ L+LL +GQ+ S   A  + TSS + +LG+DAP+TQS+F+YF LALV+G I
Sbjct: 11  WWKSHATLKILYLLLLGQVVSFILAVCSLTSSLVVDLGIDAPITQSSFNYFALALVFGSI 70

Query: 61  LLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLL 120
           LLYRRQ+L+VSWYWYLLLGFVD+QGN+L N+AYQ+TSITSVTLLD  TI WA++LT   L
Sbjct: 71  LLYRRQKLRVSWYWYLLLGFVDVQGNYLVNRAYQYTSITSVTLLDCWTIVWAIVLTWFFL 130

Query: 121 GTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--EY 178
           GTRYS  +LFGA +C+LGL +                +   LL     + F+L N+  E+
Sbjct: 131 GTRYSIWQLFGAALCVLGLGLVLLSDAGVGGGGGSRPLLGDLLVIAGTIFFALSNVGEEF 190

Query: 179 FVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTL 238
           FVK  DRVEVV M+G++GLLVS +QLS+LELK+L+ + W+ DIIL   GY +S FMFYTL
Sbjct: 191 FVKNKDRVEVVAMLGIFGLLVSVVQLSVLELKTLKSINWTADIILAIAGYTLSMFMFYTL 250

Query: 239 ATFVLK 244
             FVLK
Sbjct: 251 TPFVLK 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740094|emb|CBI30276.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 177/248 (71%), Gaps = 3/248 (1%)

Query: 1   WWR-GHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGG 59
           WWR    +LRTLH+L +GQ+ S   A + FTSSFIA+LGVDAP+TQS F+Y  LALV G 
Sbjct: 4   WWRCNEASLRTLHVLLLGQVVSFVLAVSGFTSSFIADLGVDAPLTQSFFTYLCLALVNGS 63

Query: 60  ILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119
           ILLYRRQRLQVSWYWYL LGF+D+QGN+L NKA+Q++S+TSV LLD  TI W +ILT + 
Sbjct: 64  ILLYRRQRLQVSWYWYLFLGFIDVQGNYLVNKAFQYSSLTSVALLDCWTIPWVIILTWIF 123

Query: 120 LGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--E 177
           LGTRYS  + FGA +C+ GL +          +     +    L     L  ++ N+  E
Sbjct: 124 LGTRYSIWQFFGAALCVAGLGLVLLSDAGVGGEGGSRPLLGDTLVIAGTLCIAMSNVGEE 183

Query: 178 YFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYT 237
           + VKK DRVE++ M+G++GLLVS  ++S++ELKSLE ++WST I+L FVG+A+S F+FYT
Sbjct: 184 FCVKKKDRVELMSMLGLFGLLVSVCEISIVELKSLESIEWSTKIVLAFVGFALSNFLFYT 243

Query: 238 LATFVLKV 245
           L  F+LK+
Sbjct: 244 LVPFLLKI 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481998|ref|XP_003632702.1| PREDICTED: solute carrier family 35 member F1-like [Vitis vinifera]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 177/248 (71%), Gaps = 3/248 (1%)

Query: 1   WWR-GHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGG 59
           WWR    +LRTLH+L +GQ+ S   A + FTSSFIA+LGVDAP+TQS F+Y  LALV G 
Sbjct: 340 WWRCNEASLRTLHVLLLGQVVSFVLAVSGFTSSFIADLGVDAPLTQSFFTYLCLALVNGS 399

Query: 60  ILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119
           ILLYRRQRLQVSWYWYL LGF+D+QGN+L NKA+Q++S+TSV LLD  TI W +ILT + 
Sbjct: 400 ILLYRRQRLQVSWYWYLFLGFIDVQGNYLVNKAFQYSSLTSVALLDCWTIPWVIILTWIF 459

Query: 120 LGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--E 177
           LGTRYS  + FGA +C+ GL +          +     +    L     L  ++ N+  E
Sbjct: 460 LGTRYSIWQFFGAALCVAGLGLVLLSDAGVGGEGGSRPLLGDTLVIAGTLCIAMSNVGEE 519

Query: 178 YFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYT 237
           + VKK DRVE++ M+G++GLLVS  ++S++ELKSLE ++WST I+L FVG+A+S F+FYT
Sbjct: 520 FCVKKKDRVELMSMLGLFGLLVSVCEISIVELKSLESIEWSTKIVLAFVGFALSNFLFYT 579

Query: 238 LATFVLKV 245
           L  F+LK+
Sbjct: 580 LVPFLLKI 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511003|ref|XP_003625790.1| Solute carrier family 35 member F1 [Medicago truncatula] gi|355500805|gb|AES82008.1| Solute carrier family 35 member F1 [Medicago truncatula]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/253 (52%), Positives = 172/253 (67%), Gaps = 13/253 (5%)

Query: 1   WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI 60
           WW    TL+ L +L +GQL S   A  + TSS IA  GVDAP+TQS F+Y +LALVYG I
Sbjct: 9   WWSRTATLQILGILLLGQLVSFLLALMSITSSLIAQFGVDAPLTQSLFTYGSLALVYGSI 68

Query: 61  LLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLL 120
           LLYR Q+  VSWYWYLLLGF D QG +L  KAYQ+TS+TSVTLLD  T+ WA++LT + L
Sbjct: 69  LLYRHQKPLVSWYWYLLLGFADAQGCYLVIKAYQYTSVTSVTLLDCWTVPWAILLTWIFL 128

Query: 121 GTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYL---SLLGPCSMLS----FSL 173
           GTRYS  +L G  +C+LGL    S+  F    D           +LG   ++     +++
Sbjct: 129 GTRYSLWQLCGGTLCVLGL----SLVLFSDTWDGGGGGGGGSKPVLGDVLVIVGTVFYAI 184

Query: 174 QNL--EYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVS 231
            N+  E+ VKK DRVE V M+GVYG LV++I++S+LELK+L+ +KWS+DI+L F GY VS
Sbjct: 185 SNVVEEFCVKKKDRVETVTMLGVYGFLVTAIEVSVLELKTLKSIKWSSDIVLAFAGYGVS 244

Query: 232 CFMFYTLATFVLK 244
            FMFY+LA FVLK
Sbjct: 245 SFMFYSLAPFVLK 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134462|ref|XP_002327411.1| predicted protein [Populus trichocarpa] gi|222835965|gb|EEE74386.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 153/213 (71%), Gaps = 9/213 (4%)

Query: 38  GVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTS 97
           GVDAP+TQS+F+Y  LAL+YG ILLYRRQ+LQVSWYWYLLLGFVD+QGN+L NKAYQF+S
Sbjct: 1   GVDAPLTQSSFNYLALALIYGSILLYRRQKLQVSWYWYLLLGFVDVQGNYLVNKAYQFSS 60

Query: 98  ITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC----SSMFFFQVFQD 153
           ITSVTLLD  T+AW + LT   LGTRY+  +L GA +C+LGL +     + +        
Sbjct: 61  ITSVTLLDCWTVAWVIALTWFFLGTRYTLWQLLGAAVCVLGLGLVLLSDAGVAHITGGSK 120

Query: 154 LYWAIYLSLLGPCSMLSFSLQNL--EYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKS 211
                +L + G    + F+L N+  E+ VKK  RVEVV MIGVYG LVS+++LS++ELKS
Sbjct: 121 PVLGDFLVITGT---IFFALSNVGEEFCVKKKGRVEVVTMIGVYGFLVSAVELSIVELKS 177

Query: 212 LELVKWSTDIILGFVGYAVSCFMFYTLATFVLK 244
           LE V WS DI+    GY +S F+FY+LA FVLK
Sbjct: 178 LEAVAWSKDIVFAIAGYTLSMFLFYSLAPFVLK 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511005|ref|XP_003625791.1| Solute carrier family 35 member F2 [Medicago truncatula] gi|355500806|gb|AES82009.1| Solute carrier family 35 member F2 [Medicago truncatula]

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/254 (51%), Positives = 167/254 (65%), Gaps = 14/254 (5%)

Query: 1   WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI 60
           WW    TL+ L +L +GQL S   A  + TSS IA  GVDAP+TQS F+Y +LALVYG I
Sbjct: 9   WWSRTATLQILGILLLGQLVSFLLALMSITSSLIAQFGVDAPLTQSLFTYGSLALVYGSI 68

Query: 61  LLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLL 120
           LLYR Q+  VSWYWYLLLGF D QG +L  KAYQ+TS+TSVTLLD  T+ WA++LT + L
Sbjct: 69  LLYRHQKPLVSWYWYLLLGFADAQGCYLVIKAYQYTSVTSVTLLDCWTVPWAILLTWIFL 128

Query: 121 GTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGP--------CSMLSFS 172
           GTRYS  +L G  +C+LGL    S+  F    D           P           + F+
Sbjct: 129 GTRYSLWQLCGGTLCVLGL----SLVLFSDTWDGGGGGGGGGSKPILGDVLVIVGTVFFA 184

Query: 173 LQNL--EYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAV 230
           + N+  E+ VKK DRVE V M+GVYG LV++I++S+LELK+L+ +KWS DI+L F GY V
Sbjct: 185 VSNVVEEFCVKKKDRVEAVTMLGVYGFLVTAIEVSVLELKTLKSIKWSGDIVLAFAGYGV 244

Query: 231 SCFMFYTLATFVLK 244
           S F++ +LA FVLK
Sbjct: 245 SSFIYCSLAPFVLK 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740095|emb|CBI30277.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 115/246 (46%), Positives = 157/246 (63%), Gaps = 2/246 (0%)

Query: 1   WWRGHVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI 60
           W R    LR  + L +GQ+ S   A ++F +S + +LGV+ P+TQS F+Y  L LV+G I
Sbjct: 26  WIRNERLLRNAYALFLGQVVSFLVAFSSFFTSSVIDLGVNVPLTQSFFAYLCLVLVFGTI 85

Query: 61  LLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLL 120
            L RRQ ++VSW WYL LGFVD+QGN+L  KAYQ++S TSVTLLD  TI WA+I T ++L
Sbjct: 86  RLGRRQNIRVSWIWYLFLGFVDVQGNYLVKKAYQYSSATSVTLLDCWTIPWAMIFTWIVL 145

Query: 121 GTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--EY 178
           GTRYS  + FGA +C+ GL                  I    L     L  ++ N+  E+
Sbjct: 146 GTRYSIRQFFGAALCVAGLASVFLSDAGAGGGGGSKPILGDTLVVAGTLFLAMSNVGEEF 205

Query: 179 FVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTL 238
            VKK D VEVV MIG +GLLVS+ ++ ++E ++L+ +KWS DIILG  G+ +S F+FYTL
Sbjct: 206 CVKKKDSVEVVAMIGAFGLLVSACEIYIMEFETLKSIKWSPDIILGLAGHVLSTFLFYTL 265

Query: 239 ATFVLK 244
             F+LK
Sbjct: 266 VPFLLK 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242088093|ref|XP_002439879.1| hypothetical protein SORBIDRAFT_09g021870 [Sorghum bicolor] gi|241945164|gb|EES18309.1| hypothetical protein SORBIDRAFT_09g021870 [Sorghum bicolor]

 Score =  206 bits (524), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 119/232 (51%), Positives = 153/232 (65%), Gaps = 10/232 (4%)

Query: 21  SLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGF 80
           +   AA++FTSS IANLGVDAP+TQS F+Y  L LVY  I+L RRQ+LQ++WYWYL L F
Sbjct: 21  AFAMAASSFTSSLIANLGVDAPLTQSFFAYLLLTLVYVPIVLRRRQKLQIAWYWYLALAF 80

Query: 81  VDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLC 140
            D+QGN+L  KAYQ++ ITSVTLLD  T+ W +ILT   LGTRYS  +  GAG C+ GL 
Sbjct: 81  FDVQGNYLVVKAYQYSYITSVTLLDCWTVVWVIILTWYALGTRYSLWQFVGAGTCVAGLA 140

Query: 141 -VCSSMFFFQVFQDLYWAIYLSLLGP----CSMLSFSLQNL--EYFVKKNDRVEVVCMIG 193
            V  S       QD      + LLG        + F+  N+  EY VKK DRVEVV M+G
Sbjct: 141 LVLLSDAESPEEQD---PGKMPLLGDVLVIAGTVGFAFSNVGEEYCVKKKDRVEVVAMLG 197

Query: 194 VYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKV 245
           ++GLL+S +Q+ + E K LE V WS  +I  F G+AV+ F+FYT+  FVLK+
Sbjct: 198 LFGLLISIVQILIFERKGLEAVTWSPTMISLFAGFAVAIFIFYTITPFVLKM 249

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2081262	333	AT3G59340 "AT3G59340" [Arabido	0.917	0.702	0.379	2.3e-39
TAIR|locus:2081197	363	AT3G59310 "AT3G59310" [Arabido	0.921	0.647	0.387	4.3e-38
TAIR|locus:2081212	339	AT3G59320 "AT3G59320" [Arabido	0.929	0.699	0.376	4.3e-38
WB|WBGene00022270	429	Y73E7A.3 [Caenorhabditis elega	0.909	0.540	0.318	7.1e-29
UNIPROTKB|Q8IXU6	374	SLC35F2 "Solute carrier family	0.933	0.636	0.322	1e-27
MGI|MGI:1919272	375	Slc35f2 "solute carrier family	0.917	0.624	0.327	3.5e-27
UNIPROTKB|Q5T1Q4	408	SLC35F1 "Solute carrier family	0.905	0.566	0.318	3.2e-26
DICTYBASE|DDB_G0287003	417	DDB_G0287003 "solute carrier f	0.905	0.553	0.312	1.4e-25
MGI|MGI:2139810	408	Slc35f1 "solute carrier family	0.905	0.566	0.322	1.4e-25
ASPGD|ASPL0000029133	399	AN5236 [Emericella nidulans (t	0.905	0.578	0.232	1.1e-17

TAIR|locus:2081262 AT3G59340 "AT3G59340" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 93/245 (37%), Positives = 147/245 (60%)

Query:     7 TLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ 66
             T +TL  L +GQ+ SL   +  FTSS +A  G++AP +Q+  SY  LA+VYGGI+LYRR 
Sbjct:    13 TKKTLIGLGLGQILSLLCTSNAFTSSELARKGINAPTSQTFLSYTLLAVVYGGIMLYRRP 72

Query:    67 RLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
              ++  WY Y LL  VD++GNFL  KA Q+TSITS+ LLD   I   L+LT + L T+Y  
Sbjct:    73 TIKGKWYHYFLLALVDVEGNFLVVKANQYTSITSIMLLDCWAIPCVLVLTWMFLKTKYRL 132

Query:   127 LKLFGAGICMLGLCVCSSMFFFQVF-------QDLYWAIYLSLLGPCSMLSFSLQNLEYF 179
             +K+ G  IC+ G+ +   + F  V         +     +L L G  ++ + S    E+ 
Sbjct:   133 MKISGVFICIAGVVM---VLFSDVHAGSRAGGSNPVKGDFLVLAG-ATLYAVSNTTEEFL 188

Query:   180 VKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLA 239
             VK  D VE++  +G++G ++S+IQ+++ E   L+ + WS D +  F+ +A++ F+FY+L 
Sbjct:   189 VKNADTVELMTFMGLFGAIISAIQVAIFEQGELKAIHWSADAVFPFLRFAITMFLFYSLL 248

Query:   240 TFVLK 244
               +L+
Sbjct:   249 PILLR 253

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081197 AT3G59310 "AT3G59310" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 100/258 (38%), Positives = 147/258 (56%)

Query:     7 TLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ 66
             T +TL  L +GQL SL   +  FTSS +A  G++ P +Q   +Y  LA+VYG I+LYRR 
Sbjct:    10 TKKTLIGLGLGQLLSLLATSNGFTSSELARKGINVPTSQCFLNYVLLAIVYGSIMLYRRS 69

Query:    67 RLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
              ++  WY+Y LL FVD++ NFL  KAYQ+TS+TSV LLD   I   L+LT   L T+Y  
Sbjct:    70 DIKAKWYYYFLLAFVDVEANFLVVKAYQYTSLTSVMLLDCWAIPCVLVLTWFYLKTKYRL 129

Query:   127 LKLFGAGICMLGLCVCSSMFFFQVFQDLYWAI-----------YLSLLGPCSMLSFSLQN 175
             +K+ G  IC++G+       F  VF D++              +L L G  ++ + S  +
Sbjct:   130 MKISGVFICIVGV-------FMVVFSDVHAGDRAGGSNPVKGDFLVLAG-ATLYAVSNTS 181

Query:   176 LEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMF 235
              E+ VK  D VE++  +G +G ++S+IQ+S+LE   L+ + WST  + GF+  A+S    
Sbjct:   182 EEFLVKNADTVELMTFLGFFGAIISAIQVSILERDELKAIHWSTGAV-GFLAMAISILTS 240

Query:   236 YTLATFVLKVILLIDHFS 253
                   +L V LL  HFS
Sbjct:   241 ANQRRHIL-VYLL--HFS 255

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081212 AT3G59320 "AT3G59320" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 91/242 (37%), Positives = 145/242 (59%)

Query:     7 TLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ 66
             T +TL  L +GQ+ SL        +S IA  G+ AP +Q+   Y +LA+VYGGI+LYRR 
Sbjct:    11 TKKTLIGLGLGQIISLLSTLIASIASEIARKGISAPTSQTFLGYVSLAIVYGGIMLYRRS 70

Query:    67 RLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
              ++V WY Y LL  VD++ NFL  KA+Q TS+TS+ LLD   I   L+LT + L TRY  
Sbjct:    71 AIKVKWYHYFLLAVVDVEANFLVVKAFQNTSMTSIMLLDCWAIPCVLVLTWVFLKTRYRL 130

Query:   127 LKLFGAGICMLG--LCVCSSMFFFQVF--QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182
             +K+ G  IC++G  + V S +         +     +L + G  ++ + S    E+ VK 
Sbjct:   131 MKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAG-ATLYAVSNVTEEFLVKN 189

Query:   183 NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFV 242
              D  E++  +G++G ++++IQ+S+ E  ++  ++WST+ IL ++G A+  F+FYTL T +
Sbjct:   190 ADVTELMAFLGLFGAIIAAIQISIFERGAVRAIQWSTEAILLYIGGALGLFLFYTLITIL 249

Query:   243 LK 244
             +K
Sbjct:   250 IK 251

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

WB|WBGene00022270 Y73E7A.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 80/251 (31%), Positives = 134/251 (53%)

Query:     9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVY----------G 58
             RT   L +GQ+ SL    T  +S  + N  V+AP  Q+  +YF L  VY           
Sbjct:    59 RTFKALILGQILSLCLCGTGVSSQLLVNQNVNAPAAQAFSNYFLLCFVYCISLACKNDEN 118

Query:    59 GILLYRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRL 118
             G+++  R+R    W  YL+L  +D++ N++  KAYQ+T++TSV LLD  TI   L L+ L
Sbjct:   119 GLVVVLRKR---GWR-YLILAIIDVEANYMIVKAYQYTNLTSVQLLDCATIPTVLFLSWL 174

Query:   119 LLGTRYSPLKLFGAGICMLGL-CV--CSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQN 175
              L  RY    + G  IC++G+ CV    ++            +   +L   + + +++ N
Sbjct:   175 FLSVRYLASHILGVTICIIGIACVIWADALGDKGALDGGSNKVLGDILCLAAAVMYAICN 234

Query:   176 L--EYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCF 233
             +  E+ VK++ R E + M+G++G +VS +Q ++ E ++L  + W   I+  F  +A S F
Sbjct:   235 VAEEFLVKQHSRTEYLGMLGLFGCIVSGVQTAVFEQEALSKIVWDGTIVSYFALFAFSMF 294

Query:   234 MFYTLATFVLK 244
             +FY+L T VL+
Sbjct:   295 IFYSLVTVVLQ 305

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8IXU6 SLC35F2 "Solute carrier family 35 member F2" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 81/251 (32%), Positives = 131/251 (52%)

Query:     7 TLRTLHLLSIGQLASLTFAATNFTSSFIAN-LGVDAPVTQSAFSYFTLALVYGGILLYRR 65
             T   L  +++GQ+ SL    T  TS ++A    V+ P+ QS  +Y  L L+Y  +L +R 
Sbjct:    36 TWNILKTIALGQMLSLCICGTAITSQYLAERYKVNTPMLQSFINYCLLFLIYTVMLAFRS 95

Query:    66 QR------LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL 119
                     L+  W+ Y+LLG  D++ N++  +AYQ+T++TSV LLD   I   + L+  +
Sbjct:    96 GSDNLLVILKRKWWKYILLGLADVEANYVIVRAYQYTTLTSVQLLDCFGIPVLMALSWFI 155

Query:   120 LGTRYSPLKLFGAGICMLGL--CVCSSMFFFQVFQ---DLYWAIYLSLLGPCSMLSFSLQ 174
             L  RY  +      +C+LG+   V + +   +      D+     L LLG  S+ + S  
Sbjct:   156 LHARYRVIHFIAVAVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLG-ASLYAISNV 214

Query:   175 NLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFM 234
               EY VKK  R E + M+G++G ++S IQL ++E K +  + W   I L FV +A+  F 
Sbjct:   215 CEEYIVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIASIHWDWKIALLFVAFALCMFC 274

Query:   235 FYTLATFVLKV 245
              Y+    V+KV
Sbjct:   275 LYSFMPLVIKV 285

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1919272 Slc35f2 "solute carrier family 35, member F2" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 81/247 (32%), Positives = 131/247 (53%)

Query:    11 LHLLSIGQLASLTFAATNFTSSFIAN-LGVDAPVTQSAFSYFTLALVYGGILLYRR---- 65
             L  +++GQ+ SL    T  TS ++A    V+ P+ QS  +Y  L LVY  +L ++     
Sbjct:    40 LKTIALGQMLSLCICGTAITSQYLAEKYRVNTPMLQSFINYCLLFLVYTLMLAFQSGSDN 99

Query:    66 --QRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTR 123
               + L+  W+ Y LLG  D++ N+L  +AYQ+T++TSV LLD   I   + L+  +L  R
Sbjct:   100 LLEILRRKWWKYTLLGLADVEANYLIVRAYQYTTLTSVQLLDCFGIPVLMALSWFILRAR 159

Query:   124 YSPLKLFGAGICMLGL--CVCSSMFFFQVFQ---DLYWAIYLSLLGPCSMLSFSLQNLEY 178
             Y  +      +C+LG+   V + +   +      D+     L LLG  S+ + S    EY
Sbjct:   160 YKVIHFIAVFVCLLGVGTMVGADILAGREDNSGSDVLIGDILVLLG-ASLYAVSNVCEEY 218

Query:   179 FVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTL 238
              VKK  R E + M+G++G ++S IQL ++E K +  ++W   I L FV +A+  F  Y+ 
Sbjct:   219 IVKKLSRQEFLGMVGLFGTIISGIQLLIVEYKDIARIQWDWKIALLFVAFALCMFCLYSF 278

Query:   239 ATFVLKV 245
                V+KV
Sbjct:   279 MPLVIKV 285

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5T1Q4 SLC35F1 "Solute carrier family 35 member F1" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 77/242 (31%), Positives = 125/242 (51%)

Query:    14 LSIGQLASLTFAATNFTSSFIA-NLGVDAPVTQSAFSYFTLALVYGGILLYRRQR----- 67
             +++GQ+ SL       TS +++ +   + PV QS  +Y  L LVY   L  R+       
Sbjct:    64 VALGQVLSLLICGIGLTSKYLSEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLA 123

Query:    68 -LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
              L+  W+ Y++LG +DL+ N+L  KAYQ+T++TS+ LLD   I   ++L+   L  RY  
Sbjct:   124 ILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSIQLLDCFVIPVVILLSWFFLLIRYKA 183

Query:   127 LKLFGAGICMLGL-CVCSSMFFFQVFQ---DLYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182
             +   G  +C+LG+ C+  +       Q   +      L +LG  ++   S    EY ++ 
Sbjct:   184 VHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEEYIIRT 243

Query:   183 NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFV 242
               RVE + MIG++G   S IQL+++E K L  V W   I L +VG++   F  Y+    V
Sbjct:   244 LSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVV 303

Query:   243 LK 244
             +K
Sbjct:   304 IK 305

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0287003 DDB_G0287003 "solute carrier family 35 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 75/240 (31%), Positives = 129/240 (53%)

Query:    14 LSIGQLASLTFAATN-FTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR---QRLQ 69
             L++GQL S+  A T  F+   +   GV+ P TQS  +Y  L  VY  +L+ R    + ++
Sbjct:    31 LALGQLLSVMIAGTGIFSQLLVKKYGVNIPTTQSLLNYILLC-VYLLVLVKRGVLWETIK 89

Query:    70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKL 129
                 ++  L  VDL+ N++  KAYQ+T+ITSV LLD  TI   ++L+R+ L TR++ + +
Sbjct:    90 TKSIYFAPLALVDLEANYIVVKAYQYTTITSVMLLDCFTIPCVVVLSRIFLKTRFTFVHI 149

Query:   130 FGAGICMLGLC--VCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNL--EYFVKKNDR 185
                 I + G+   V S +   +        +    L   S + +++ N+  E  VKK DR
Sbjct:   150 IAVLIALAGMAILVVSDIIEGESANGGSNPLLGDFLCLASSVCYAISNVGQEATVKKYDR 209

Query:   186 VEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKV 245
             V  + MIG+YG +   IQ+++LE   L  + WS  ++   VG+A+  F+ Y+    ++++
Sbjct:   210 VTYLAMIGLYGSIFCGIQIAILERNELATMAWSGGVVGYIVGFALCLFIMYSFTPTMMEI 269

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2139810 Slc35f1 "solute carrier family 35, member F1" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 78/242 (32%), Positives = 124/242 (51%)

Query:    14 LSIGQLASLTFAATNFTSSFIA-NLGVDAPVTQSAFSYFTLALVYGGILLYRRQR----- 67
             +++GQ+ SL       TS ++A +   + PV QS  +Y  L LVY   L  R+       
Sbjct:    64 VALGQVLSLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLA 123

Query:    68 -LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSP 126
              L+  W+ Y++LG +DL+ N+L  KAYQ+T++TSV LLD   I   ++L+   L  RY  
Sbjct:   124 ILRRRWWKYMILGLIDLEANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRYKA 183

Query:   127 LKLFGAGICMLGL-CVCSSMFFFQVFQ---DLYWAIYLSLLGPCSMLSFSLQNLEYFVKK 182
             +   G  +C+LG+ C+  +       Q   +      L +LG  ++   S    E  ++ 
Sbjct:   184 VHFIGIVVCILGMGCMVGADVLVGRHQGAGENKLVGDLLVLGGATLYGISNVWEESIIRT 243

Query:   183 NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFV 242
               RVE + MIG++G   S IQL+++E K L  V W   I L +VG++   F  Y+    V
Sbjct:   244 LSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDWQIGLLYVGFSACMFGLYSFMPVV 303

Query:   243 LK 244
             +K
Sbjct:   304 IK 305

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000029133 AN5236 [Emericella nidulans (taxid:162425)]

 Score = 220 (82.5 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 57/245 (23%), Positives = 120/245 (48%)

Query:    14 LSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYR---RQRLQV 70
             L +GQ  ++    TN  ++ +AN   + P  Q+ F+Y  L +++    +Y+   +   ++
Sbjct:    64 LLLGQFLAIANTGTNTFNTLLANKNTNIPAFQTFFNYSLLNIIFTSYTIYKYGIKGWFEM 123

Query:    71 SWY--W-YLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPL 127
              W   W Y++L F D++GN+    AY++T++ S  L++   I   ++++ L L  RY   
Sbjct:   124 LWKRGWKYIILSFCDVEGNYFMVLAYEYTTMMSAQLINFWAIVVVVVVSFLFLRVRYHIS 183

Query:   128 KLFGAGICM--LGLCVCSSMFFFQVFQDLYWAIYL-----SLLGPCSMLSFSLQNLEYFV 180
             ++ G  IC+  +G+ + S         D+     +     +LLG  S    +    E+FV
Sbjct:   184 QVLGILICIGGMGILIASDHIQGTNGGDISRGNQIKGDLFALLG-ASFYGLANTGEEFFV 242

Query:   181 KKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLAT 240
                   EV+  +G +G++++ +Q ++ + KS++   W   +     GY +   +FY+ A 
Sbjct:   243 STAPVYEVIGQMGFFGMIINGVQAAIFDRKSIQHAHWDGQVGGYLTGYTLCLSIFYSTAP 302

Query:   241 FVLKV 245
              + ++
Sbjct:   303 LLFRL 307

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021639001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (323 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam06027	336	pfam06027, DUF914, Eukaryotic protein of unknown f	5e-47

>gnl|CDD|218861 pfam06027, DUF914, Eukaryotic protein of unknown function (DUF914)

 Score =  159 bits (403), Expect = 5e-47
 Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 22/255 (8%)

Query: 7   TLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR- 65
           T RTL  L++GQ+ SL    T  TS ++A  GV+AP  Q+  +Y  L LVY GIL +RR 
Sbjct: 9   TKRTLIGLALGQILSLCITGTATTSQYLAEKGVNAPAFQTFLNYALLFLVYTGILAFRRG 68

Query: 66  -----QRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLL 120
                  ++  W+ Y++L  +D++ N+L  KAYQ+T++TSV LLD   I   L+L+   L
Sbjct: 69  EKNLLVIIKRKWWKYIILALIDVEANYLVVKAYQYTNLTSVQLLDCWAIPVVLVLSWFFL 128

Query: 121 GTRYSPLKLFGAGICMLGL-CVCSSMFFF---------QVFQDLYWAIYLSLLGPCSMLS 170
             RY    + G  IC+LG+ CV  S              V  D+      +L    ++  
Sbjct: 129 KVRYRASHILGVVICILGVVCVVGSDVLAGRRAYGGSNPVLGDILVLAGATLYAVSNVTE 188

Query: 171 FSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAV 230
                 E+ VKK  R E + M+G++G ++S IQ ++ E K+L  + W  +I L F G+A+
Sbjct: 189 ------EFLVKKLSRTEFLGMLGLFGAIISGIQTAIFERKALYKIHWDWEIGLLFAGFAL 242

Query: 231 SCFMFYTLATFVLKV 245
             F+ Y+L   ++K 
Sbjct: 243 CMFLLYSLMPILIKK 257

This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as being putative membrane proteins. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	100.0
KOG2766	336	consensus Predicted membrane protein [Function unk	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	99.88
PRK11689	295	aromatic amino acid exporter; Provisional	99.87
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.86
PLN00411	358	nodulin MtN21 family protein; Provisional	99.86
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.84
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.84
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.75
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.75
PRK15430	296	putative chloramphenical resistance permease RarD;	99.74
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.7
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.7
KOG2765	416	consensus Predicted membrane protein [Function unk	99.67
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.65
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.45
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.44
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.28
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.23
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.18
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.05
COG2510	140	Predicted membrane protein [Function unknown]	98.99
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.94
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.9
COG2962	293	RarD Predicted permeases [General function predict	98.85
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.79
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.71
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.62
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.58
PRK11272	292	putative DMT superfamily transporter inner membran	98.55
PLN00411	358	nodulin MtN21 family protein; Provisional	98.48
PRK11689	295	aromatic amino acid exporter; Provisional	98.43
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.34
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.33
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.32
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.29
PRK15430	296	putative chloramphenical resistance permease RarD;	98.24
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.22
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.22
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.19
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.0
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.87
KOG1581	327	consensus UDP-galactose transporter related protei	97.74
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.67
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.61
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.57
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.46
COG2076	106	EmrE Membrane transporters of cations and cationic	97.38
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.3
PRK11431	105	multidrug efflux system protein; Provisional	97.22
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.17
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.08
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.95
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.88
KOG1580	337	consensus UDP-galactose transporter related protei	96.78
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.77
PRK13499	345	rhamnose-proton symporter; Provisional	96.6
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	96.53
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.39
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.39
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.49
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.47
COG2962	293	RarD Predicted permeases [General function predict	95.38
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	95.32
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.32
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	95.07
KOG4510	346	consensus Permease of the drug/metabolite transpor	94.98
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	94.61
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	94.6
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	94.59
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	94.17
KOG2765	416	consensus Predicted membrane protein [Function unk	94.11
KOG1580	337	consensus UDP-galactose transporter related protei	93.93
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	93.81
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	92.52
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	91.71
PRK02237	109	hypothetical protein; Provisional	91.15
KOG2922	335	consensus Uncharacterized conserved protein [Funct	90.12
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	89.47
KOG1582	367	consensus UDP-galactose transporter related protei	88.41
COG1742	109	Uncharacterized conserved protein [Function unknow	84.24
PRK13499	345	rhamnose-proton symporter; Provisional	83.35
KOG1581	327	consensus UDP-galactose transporter related protei	82.79

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=100.00  E-value=1.7e-40  Score=300.39  Aligned_cols=244  Identities=39%  Similarity=0.605  Sum_probs=224.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh------hhhhhHHHHHHH
Q 043912            5 HVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ------RLQVSWYWYLLL   78 (255)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~~~~l~~   78 (255)
                      .++||+++.+++||+++++++++|..++.+.+++.+.|.++++++|+..++++.+...+|++      ..+++||+++++
T Consensus         6 ~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~ll   85 (334)
T PF06027_consen    6 LFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLL   85 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999988887666543      257899999999


Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhccc---chh--hhch
Q 043912           79 GFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMF---FFQ--VFQD  153 (255)
Q Consensus        79 g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~---~~~--~~~~  153 (255)
                      +++++.+|++.+.|++||++++++++.+++.+++++++++++|||+++.|++|++++++|+.++....   +.+  .+++
T Consensus        86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~  165 (334)
T PF06027_consen   86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN  165 (334)
T ss_pred             HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999985321   111  1224


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Q 043912          154 LYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCF  233 (255)
Q Consensus       154 ~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~  233 (255)
                      ...||+++++|| ++||++++++|+..|+.|+.+++++.+++|.+++.++..++|+.+.+..+|+.....++++|.++++
T Consensus       166 ~i~GDll~l~~a-~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf  244 (334)
T PF06027_consen  166 PILGDLLALLGA-ILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF  244 (334)
T ss_pred             cchhHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence            589999999999 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 043912          234 MFYTLATFVLKVILLI  249 (255)
Q Consensus       234 ~~~~~~~~~~~~~~~~  249 (255)
                      .+|+++|.+++++||.
T Consensus       245 ~~y~l~p~~l~~ssAt  260 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSAT  260 (334)
T ss_pred             HHHHHHHHHHHhCccc
Confidence            9999999999999985

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.4e-34  Score=247.23  Aligned_cols=240  Identities=35%  Similarity=0.633  Sum_probs=219.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 043912            6 VTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQG   85 (255)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~   85 (255)
                      +.||+++++.+||++++|+++.++.++.+++.+++.|..|+++.|.+.++++.|+.++|++-.+..|+.++++++.+..+
T Consensus        12 ~tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEa   91 (336)
T KOG2766|consen   12 STKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEA   91 (336)
T ss_pred             hchhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecc
Confidence            38999999999999999999999999999998999999999999999999999999899988888899999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc-cch--hh-hchhhHHHHHH
Q 043912           86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM-FFF--QV-FQDLYWAIYLS  161 (255)
Q Consensus        86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~-~~~--~~-~~~~~~Gdll~  161 (255)
                      |++...|+|||+.++.+++.+-..+-+++++|+|||.|++..|+.|+.+|+.|++++..+ +.+  +. +++...||.++
T Consensus        92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lv  171 (336)
T KOG2766|consen   92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLV  171 (336)
T ss_pred             cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEE
Confidence            999899999999999999999999999999999999999999999999999999998532 111  11 23447899999


Q ss_pred             HHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 043912          162 LLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATF  241 (255)
Q Consensus       162 l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  241 (255)
                      +.+| -+||+.++.+|...|+.|..+++++.+++|++++.++ .++|+.+....+|+.. +..+..+...++.+|.++|.
T Consensus       172 i~GA-TlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~-i~~yl~f~L~MFllYsl~pi  248 (336)
T KOG2766|consen  172 IAGA-TLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSA-IFLYLRFALTMFLLYSLAPI  248 (336)
T ss_pred             Eecc-eeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHH-HHHHHHHHHHHHHHHHhhHH
Confidence            9999 9999999999999999999999999999999999998 7889988888999855 55556699999999999999


Q ss_pred             HHHHhhh
Q 043912          242 VLKVILL  248 (255)
Q Consensus       242 ~~~~~~~  248 (255)
                      .+|..||
T Consensus       249 l~k~~~a  255 (336)
T KOG2766|consen  249 LIKTNSA  255 (336)
T ss_pred             heecCCc
Confidence            9999887

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.88  E-value=5.7e-20  Score=164.42  Aligned_cols=223  Identities=16%  Similarity=0.116  Sum_probs=157.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHH
Q 043912            6 VTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR--LQVSWYWYLLLGFVDL   83 (255)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~~~~~l~~g~~~~   83 (255)
                      |-||. .-..+.-+...++|++|++..|...++. +|......|+...+++++++..+++++  .++++......|.++.
T Consensus         2 ~~~~~-~~~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~   79 (292)
T PRK11272          2 RFRQL-LPLFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLL   79 (292)
T ss_pred             chHHH-HHHHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence            33444 3444457778899999999999876544 578889999999888877775444322  3455666677887765


Q ss_pred             HH-HHHHHHHh-hhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHH
Q 043912           84 QG-NFLANKAY-QFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLS  161 (255)
Q Consensus        84 ~~-~~~~~~al-~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~  161 (255)
                      .. +.+.+.+. +++++++++++.++.|+++++++.+ +|||++++++.|+.++++|+.++..+   +..+++..||+++
T Consensus        80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~---~~~~~~~~G~l~~  155 (292)
T PRK11272         80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG---GNLSGNPWGAILI  155 (292)
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC---cccccchHHHHHH
Confidence            44 55677888 8999999999999999999999986 69999999999999999999988321   1122346799999


Q ss_pred             HHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHH
Q 043912          162 LLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFY  236 (255)
Q Consensus       162 l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~  236 (255)
                      ++|+ ++||.|++..||..++ ++.....++...+.+...+.....|.+.....+.+.+..+.+.+...+...+.
T Consensus       156 l~a~-~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~  228 (292)
T PRK11272        156 LIAS-ASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAIS  228 (292)
T ss_pred             HHHH-HHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999 9999999999987544 34445566666676665554443332211112333444556666555544443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.87  E-value=8.5e-20  Score=163.61  Aligned_cols=222  Identities=13%  Similarity=0.022  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHHHHHhhh
Q 043912           17 GQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGN-FLANKAYQF   95 (255)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~al~~   95 (255)
                      ..+.+.++|++|++..|...++ -+|....++|+.++++++.++.  ++++.++++++....+.+....+ .+.+.++++
T Consensus         8 ~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~   84 (295)
T PRK11689          8 IGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--GFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY   84 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--cccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4667888999999999988765 4688999999988888776653  22333334444555566655554 345666654


Q ss_pred             ----chHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccc-hhh------hchhhHHHHHHHHh
Q 043912           96 ----TSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFF-FQV------FQDLYWAIYLSLLG  164 (255)
Q Consensus        96 ----Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~-~~~------~~~~~~Gdll~l~s  164 (255)
                          +++++++++.+++|+++++++++++|||++++|+.|++++++|++++..+.. .+.      ..+...||+++++|
T Consensus        85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a  164 (295)
T PRK11689         85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG  164 (295)
T ss_pred             hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence                5778889999999999999999999999999999999999999999853211 110      01235699999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043912          165 PCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLK  244 (255)
Q Consensus       165 a~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  244 (255)
                      + ++||.|+++.||..+++++.....  . .+.+...++.. .+.....+.+++.+..+.+.+ ..+ ..-|.+-...+|
T Consensus       165 a-~~~A~~~v~~k~~~~~~~~~~~~~--~-~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~t-~~~~~l~~~al~  237 (295)
T PRK11689        165 A-FIWAAYCNVTRKYARGKNGITLFF--I-LTALALWIKYF-LSPQPAMVFSLPAIIKLLLAA-AAM-GFGYAAWNVGIL  237 (295)
T ss_pred             H-HHHHHHHHHHhhccCCCCchhHHH--H-HHHHHHHHHHH-HhcCccccCCHHHHHHHHHHH-HHH-HHHHHHHHHHHH
Confidence            9 999999999999887777765432  2 22233322222 232222223444444455555 334 334444445555


Q ss_pred             Hhhh
Q 043912          245 VILL  248 (255)
Q Consensus       245 ~~~~  248 (255)
                      ..++
T Consensus       238 ~~~a  241 (295)
T PRK11689        238 HGNM  241 (295)
T ss_pred             ccCH
Confidence            4443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.86  E-value=1.6e-19  Score=157.81  Aligned_cols=175  Identities=18%  Similarity=0.072  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhchHHHHH
Q 043912           25 AATNFTSSFIANLGVDAPVTQSAFSYFTLALVY-GGILLYRRQRLQVSWYWYLLLGFVDLQG-NFLANKAYQFTSITSVT  102 (255)
Q Consensus        25 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~l-l~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~al~~Ts~~~a~  102 (255)
                      ||++.+..|...++ ..|.....+||...+.++ .+.. +++ +.++++...+..|.++... +.+.+.|++++++++++
T Consensus         1 Wg~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~   77 (260)
T TIGR00950         1 WGTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLL-RRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAA   77 (260)
T ss_pred             CcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHH-Hhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence            78888888887654 355666666666655444 4443 333 4455666777788777665 46789999999999999


Q ss_pred             HHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 043912          103 LLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKK  182 (255)
Q Consensus       103 ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~  182 (255)
                      ++.++.|+++++++.+++|||++++|+.|+.++++|+.++..   .+..+++..|+.++++++ ++|+.++++.||..++
T Consensus        78 ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~---~~~~~~~~~G~~~~l~a~-~~~a~~~~~~k~~~~~  153 (260)
T TIGR00950        78 LLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS---DGNLSINPAGLLLGLGSG-ISFALGTVLYKRLVKK  153 (260)
T ss_pred             HHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc---CCcccccHHHHHHHHHHH-HHHHHHHHHHhHHhhc
Confidence            999999999999999999999999999999999999999842   222233478999999999 9999999999998877


Q ss_pred             CCHH--HHHHHHHHHHHHHHHHHHHH
Q 043912          183 NDRV--EVVCMIGVYGLLVSSIQLSM  206 (255)
Q Consensus       183 ~~~~--~~~~~~~~~~~~~~~~~~~~  206 (255)
                      +|+.  ....+....+.++..+....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~l~~~~~~  179 (260)
T TIGR00950       154 EGPELLQFTGWVLLLGALLLLPFAWF  179 (260)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            7743  44445666676666544443

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.86  E-value=5.6e-19  Score=162.43  Aligned_cols=200  Identities=15%  Similarity=0.091  Sum_probs=146.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h-h---hhhHHHHHHH
Q 043912            5 HVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R-L---QVSWYWYLLL   78 (255)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~-~---~~~~~~~l~~   78 (255)
                      +||.+.+...+.-|++..   +-+..++...+++. .|....++|+.+++++++|+..++++  + .   ++++....++
T Consensus         9 ~~~~~~~~~~~~~q~~~~---~~~~~~k~a~~~G~-~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~   84 (358)
T PLN00411          9 RREAVFLTAMLATETSVV---GISTLFKVATSKGL-NIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLL   84 (358)
T ss_pred             hhccchHHHHHHHHHHHH---HHHHHHHHHHHCCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence            346677777777776542   33334444444454 57778899999999888887654321  1 1   2344566778


Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHH------ccccCchhhHHHHHHHHHHHHHhhcccchh---
Q 043912           79 GFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL------LGTRYSPLKLFGAGICMLGLCVCSSMFFFQ---  149 (255)
Q Consensus        79 g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~------l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~---  149 (255)
                      |+++...+.+.+.|++||++++++++.+++|+++.++++++      +|||++++|++|++++++|+.+++...+.+   
T Consensus        85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~  164 (358)
T PLN00411         85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV  164 (358)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence            88774334578999999999999999999999999999999      699999999999999999999886321110   


Q ss_pred             -----------------hhc-hhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHHHHHHhhc
Q 043912          150 -----------------VFQ-DLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRV-EVVCMIGVYGLLVSSIQLSMLEL  209 (255)
Q Consensus       150 -----------------~~~-~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~  209 (255)
                                       ... |...||+++++|+ ++||+|+++.|+..+++++. ....+++..+.+...++....|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa-~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQG-IFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccccccCCCcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence                             001 1256999999999 99999999999988888664 44566776666666666666664

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.84  E-value=7.2e-19  Score=157.79  Aligned_cols=172  Identities=10%  Similarity=0.024  Sum_probs=136.2

Q ss_pred             HHHhcCCChhHHHHHHHHHHHHHHHHHHHH---HHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhH
Q 043912           33 FIANLGVDAPVTQSAFSYFTLALVYGGILL---YRRQR-LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCT  108 (255)
Q Consensus        33 ~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~---~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~  108 (255)
                      |...+++..|...+..|+...++...+...   +++++ .+++++..+.+|+++...+.+.+.+++++++++++++.+++
T Consensus        22 K~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~  101 (302)
T TIGR00817        22 KKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAME  101 (302)
T ss_pred             HHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence            444445677888888887776655433311   11112 35667778889999766667899999999999999999999


Q ss_pred             HHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhc--CCCHH
Q 043912          109 IAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVK--KNDRV  186 (255)
Q Consensus       109 p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~--~~~~~  186 (255)
                      |+++++++++++|||++++++.|++++++|+.+..   .. ..+.+..||+++++|+ ++||+|+++.||..+  ++|+.
T Consensus       102 Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~-~~~~~~~G~~~~l~a~-~~~a~~~v~~k~~~~~~~~~~~  176 (302)
T TIGR00817       102 PFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DT-ELSFNWAGFLSAMISN-ITFVSRNIFSKKAMTIKSLDKT  176 (302)
T ss_pred             hHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CC-cccccHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCCcc
Confidence            99999999999999999999999999999998762   11 1223467999999999 999999999999887  78899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc
Q 043912          187 EVVCMIGVYGLLVSSIQLSMLEL  209 (255)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~e~  209 (255)
                      +.+.++...+.+...|.....|.
T Consensus       177 ~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       177 NLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999998888887776665563

specificities overlap.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.84  E-value=3.6e-18  Score=153.33  Aligned_cols=215  Identities=14%  Similarity=0.139  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHHHhhhc
Q 043912           18 QLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNF-LANKAYQFT   96 (255)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~al~~T   96 (255)
                      -+++.++||++++..|...++ .+|.....+|+.++++.++++. +++ +  +++...+..|++....++ +.+.+++++
T Consensus         9 ~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~-~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~   83 (299)
T PRK11453          9 ALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV-ARP-K--VPLNLLLGYGLTISFGQFAFLFCAINFG   83 (299)
T ss_pred             HHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh-cCC-C--CchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456789999999999987655 4688999999988776655543 221 1  223334455555544443 567888884


Q ss_pred             -hHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHH
Q 043912           97 -SITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQN  175 (255)
Q Consensus        97 -s~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~  175 (255)
                       ++++++++.+++|+++++++++++|||+++++++|++++++|+.++..+. .+..+.+..||+++++++ ++||.|+++
T Consensus        84 ~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~-~~~~~~~~~G~~l~l~aa-l~~a~~~v~  161 (299)
T PRK11453         84 MPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDS-LNGQHVAMLGFMLTLAAA-FSWACGNIF  161 (299)
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcccc-CCCcchhHHHHHHHHHHH-HHHHHHHHH
Confidence             78899999999999999999999999999999999999999999984211 111111347999999999 999999999


Q ss_pred             HHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHhhccc-----cccccchHHHHHHHHHHHHHHHHHHHHH
Q 043912          176 LEYFVKKNDRVEV---VCMIGVYGLLVSSIQLSMLELKS-----LELVKWSTDIILGFVGYAVSCFMFYTLA  239 (255)
Q Consensus       176 ~k~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~  239 (255)
                      .||..++.++...   ..+++..+.+.........|.+.     ..+.+++.+..+.+.+..++.+.|+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~  233 (299)
T PRK11453        162 NKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWG  233 (299)
T ss_pred             HHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9997665543322   23333333222221222334321     1223444555677777777766666543

>TIGR00688 rarD rarD protein

Probab=99.81  E-value=3.7e-17  Score=143.29  Aligned_cols=154  Identities=15%  Similarity=-0.032  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh------hhh----hhhHH-HHHHHHHHHHHH
Q 043912           17 GQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR------QRL----QVSWY-WYLLLGFVDLQG   85 (255)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~------~~~----~~~~~-~~l~~g~~~~~~   85 (255)
                      ..+++.+.|+++.+..|... + .+|....+.|.++.++++.++...++      ++.    +++++ .....|.+....
T Consensus         6 ~~i~a~~~wg~~~~~~k~~~-~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   83 (256)
T TIGR00688         6 VSLLASFLFGYMYYYSKLLK-P-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFN   83 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence            45666777888888888743 3 46788888898887776655542221      111    12222 234455554445


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhH
Q 043912           86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGP  165 (255)
Q Consensus        86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa  165 (255)
                      +.+++.|++++++++++++.+++|+++++++++++|||++++|+.|++++++|+.++.   ..  ..+.   ..++++++
T Consensus        84 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~---~~--~~~~---~~~~l~aa  155 (256)
T TIGR00688        84 WWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI---VL--KGSL---PWEALVLA  155 (256)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HH--cCCc---hHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999883   11  1111   14688899


Q ss_pred             HHHHHHHHHHHHHhhc
Q 043912          166 CSMLSFSLQNLEYFVK  181 (255)
Q Consensus       166 ~~~~A~~~v~~k~~~~  181 (255)
                       ++||.|.+..||..+
T Consensus       156 -~~~a~~~i~~~~~~~  170 (256)
T TIGR00688       156 -FSFTAYGLIRKALKN  170 (256)
T ss_pred             -HHHHHHHHHHhhcCC
Confidence             999999999998654

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.75  E-value=1.7e-15  Score=139.18  Aligned_cols=168  Identities=14%  Similarity=0.097  Sum_probs=131.5

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHH--Hh-hhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHH
Q 043912           37 LGVDAPVTQSAFSYFTLALVYGGILLY--RR-QRL---QVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIA  110 (255)
Q Consensus        37 ~~~~~P~~~~~~~~~~~~~~ll~~~~~--~~-~~~---~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~  110 (255)
                      +...-|...+.+|+++.++....+...  ++ ++.   +++++..+.+|+++..++...+.|+++++++.++++.+++|+
T Consensus        73 ~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pv  152 (350)
T PTZ00343         73 NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPV  152 (350)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHH
Confidence            345449999999999876654333211  11 222   345678889999998887778899999999999999999999


Q ss_pred             HHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCC-------
Q 043912          111 WALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKN-------  183 (255)
Q Consensus       111 ~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~-------  183 (255)
                      ++++++++++|||++++++.+++++++|+.+..   .. ..+.+..|++++++|+ ++||.|+++.||..++.       
T Consensus       153 ft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~---~~-~~~~~~~G~~~~l~s~-~~~a~~~i~~k~~~~~~~~~~~~~  227 (350)
T PTZ00343        153 FTALLSILFLKQFLNLYAYLSLIPIVGGVALAS---VK-ELHFTWLAFWCAMLSN-LGSSLRSIFAKKTMKNKSEIGENL  227 (350)
T ss_pred             HHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee---cc-cchhHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccccccC
Confidence            999999999999999999999999999999983   11 1122467999999999 99999999999987643       


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043912          184 DRVEVVCMIGVYGLLVSSIQLSMLEL  209 (255)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~e~  209 (255)
                      ++.+....+...+.++..|.....|.
T Consensus       228 ~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        228 TASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45556666677888887776665664

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.75  E-value=1.6e-15  Score=135.81  Aligned_cols=229  Identities=12%  Similarity=-0.024  Sum_probs=148.9

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHH
Q 043912            5 HVTLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR-LQVSWYWYLLLGFVDL   83 (255)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~l~~g~~~~   83 (255)
                      .||.+..+++..--+.+++ |+++....|...++ -+|....++|+++.++++.++...++++ .+++++..+..|.+..
T Consensus         5 ~~~~~~~~~~~~~~la~~~-~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (293)
T PRK10532          5 LRKLPVWLPILLLLIAMAS-IQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLG   82 (293)
T ss_pred             ccccccchHHHHHHHHHHH-HHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHH
Confidence            4566677777555554444 45555566655544 4677899999999888776654322322 3456666667777766


Q ss_pred             HHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHH
Q 043912           84 QGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLL  163 (255)
Q Consensus        84 ~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~  163 (255)
                      ..+.+.+.++++++++.++.+.+++|+++.+++    +||+++  ..++.++++|+.++... +.+..+.+..||+++++
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~-~~~~~~~~~~G~ll~l~  155 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPL-GQDVSHVDLTGAALALG  155 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeec-CCCcccCChHHHHHHHH
Confidence            667788899999999999999999999998876    366554  45567889999987421 11111223579999999


Q ss_pred             hHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043912          164 GPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVL  243 (255)
Q Consensus       164 sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  243 (255)
                      ++ ++||.|++..||..+++++... ..+.+.+.++..+.... +.. ....+++.+....+++..++.+.|. +-...+
T Consensus       156 aa-~~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~~l~lgv~~t~~~~~-l~~~~~  230 (293)
T PRK10532        156 AG-ACWAIYILSGQRAGAEHGPATV-AIGSLIAALIFVPIGAL-QAG-EALWHWSILPLGLAVAILSTALPYS-LEMIAL  230 (293)
T ss_pred             HH-HHHHHHHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHH-ccC-cccCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            99 9999999999998777777665 34555665555443332 221 1122333333445666655555544 333444


Q ss_pred             HHhh
Q 043912          244 KVIL  247 (255)
Q Consensus       244 ~~~~  247 (255)
                      |+.+
T Consensus       231 ~~~~  234 (293)
T PRK10532        231 TRLP  234 (293)
T ss_pred             HhcC
Confidence            4443

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.74  E-value=3.7e-15  Score=133.62  Aligned_cols=160  Identities=12%  Similarity=-0.022  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h----h-hhhHHHHHHHHHHH
Q 043912           10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R----L-QVSWYWYLLLGFVD   82 (255)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~----~-~~~~~~~l~~g~~~   82 (255)
                      ..+++.... .+.+.|+.+.+..|... + .+|......|..+..+++.++...+++  +    . +++.+.....+.+.
T Consensus         6 ~~~g~~~~l-~a~~~wg~~~~~~k~~~-~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (296)
T PRK15430          6 TRQGVLLAL-AAYFIWGIAPAYFKLIY-Y-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL   82 (296)
T ss_pred             hhhHHHHHH-HHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence            345555544 44455677777767653 3 457788888888877666665433221  1    1 11222233456565


Q ss_pred             HHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHH
Q 043912           83 LQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLS  161 (255)
Q Consensus        83 ~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~  161 (255)
                      ... +.+++.|++++++++++++.+++|+++++++++++|||++++++.|++++++|+.++..   .  ..+   .+.++
T Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~---~--~~~---~~~~~  154 (296)
T PRK15430         83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW---T--FGS---LPIIA  154 (296)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH---H--cCC---ccHHH
Confidence            555 56799999999999999999999999999999999999999999999999999999831   1  111   13578


Q ss_pred             HHhHHHHHHHHHHHHHHhhc
Q 043912          162 LLGPCSMLSFSLQNLEYFVK  181 (255)
Q Consensus       162 l~sa~~~~A~~~v~~k~~~~  181 (255)
                      ++++ ++||.|++..||..+
T Consensus       155 l~aa-~~~a~~~i~~r~~~~  173 (296)
T PRK15430        155 LGLA-FSFAFYGLVRKKIAV  173 (296)
T ss_pred             HHHH-HHHHHHHHHHHhcCC
Confidence            8899 999999999888643

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.70  E-value=5.4e-15  Score=131.55  Aligned_cols=163  Identities=18%  Similarity=0.125  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--h---hhhhhhHHHHHHHHHHHHH-HHHH
Q 043912           15 SIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYR--R---QRLQVSWYWYLLLGFVDLQ-GNFL   88 (255)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~--~---~~~~~~~~~~l~~g~~~~~-~~~~   88 (255)
                      .+.-..+++++..+...++..++  +.+.  ...+....++++.|+...+  +   ++.+++++.....+.++.. .+.+
T Consensus         4 ~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         4 TLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            44555666666666666656543  3343  2434444555566665433  1   2234455555555555444 4567


Q ss_pred             HHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHH
Q 043912           89 ANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSM  168 (255)
Q Consensus        89 ~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~  168 (255)
                      .+.|++++++++++.+.++.|+++.+++++++|||++++++.|+.++++|+.++..+   +....+..|+.++++++ ++
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~---~~~~~~~~g~~~~l~aa-l~  155 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS---RFAQHRRKAYAWALAAA-LG  155 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---cccccchhHHHHHHHHH-HH
Confidence            899999999999999999999999999999999999999999999999999988421   11122356899999999 99


Q ss_pred             HHHHHHHHHHhhcCCCH
Q 043912          169 LSFSLQNLEYFVKKNDR  185 (255)
Q Consensus       169 ~A~~~v~~k~~~~~~~~  185 (255)
                      |+.|++..|+..++.++
T Consensus       156 ~a~~~i~~k~~~~~~~~  172 (281)
T TIGR03340       156 TAIYSLSDKAAALGVPA  172 (281)
T ss_pred             HHHhhhhccccccchhc
Confidence            99999998876544443

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.70  E-value=9.2e-16  Score=133.55  Aligned_cols=226  Identities=19%  Similarity=0.264  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHh-------cCCChhHHHHHHHHHHHHHHHHHHHHHHhhh------------h---hhh--HHHHHHHHH
Q 043912           25 AATNFTSSFIAN-------LGVDAPVTQSAFSYFTLALVYGGILLYRRQR------------L---QVS--WYWYLLLGF   80 (255)
Q Consensus        25 ~~~~~~~~~~~~-------~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~------------~---~~~--~~~~l~~g~   80 (255)
                      -.-|.+.+|-.+       .+++.|+.++...++--.+|+..+.+.|++.            .   +.+  ...++..++
T Consensus        15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal   94 (372)
T KOG3912|consen   15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPAL   94 (372)
T ss_pred             ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHH
Confidence            344556666554       2588999999999987767765555444320            1   111  234567899


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc-cc--hhhhc---hh
Q 043912           81 VDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM-FF--FQVFQ---DL  154 (255)
Q Consensus        81 ~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~-~~--~~~~~---~~  154 (255)
                      ++.+++.+.+.|+.+|++++-+++.....+|+.+++.-+|+++++.+||+|+....+|++++... .-  .|.-.   +.
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~i  174 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSI  174 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998421 11  11111   12


Q ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhc----cc--------c-------c
Q 043912          155 YWAIYLSLLGPCSMLSFSLQNLEYFVKK--NDRVEVVCMIGVYGLLVSSIQLSMLEL----KS--------L-------E  213 (255)
Q Consensus       155 ~~Gdll~l~sa~~~~A~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~--------~-------~  213 (255)
                      ..||++.+.+. +.-|.+.+.+||..++  .+|.+.+++++.+|.++......+...    ++        +       .
T Consensus       175 itGdllIiiaq-iivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~  253 (372)
T KOG3912|consen  175 ITGDLLIIIAQ-IIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA  253 (372)
T ss_pred             hhhhHHHHHHH-HHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence            68999999999 9999999999998876  569999999999997765444433321    00        1       1


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912          214 LVKWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDH  251 (255)
Q Consensus       214 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  251 (255)
                      .++..+...+...++.+|+..||...-.+.|++||--|
T Consensus       254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattR  291 (372)
T KOG3912|consen  254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTR  291 (372)
T ss_pred             HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHH
Confidence            11223345678889999999999999999999998544

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.67  E-value=2.1e-15  Score=135.87  Aligned_cols=140  Identities=19%  Similarity=0.202  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchh----h
Q 043912           75 YLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQ----V  150 (255)
Q Consensus        75 ~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~----~  150 (255)
                      .+....+.+.+|+..+.|+.+|++++.+++.++.-+|+..++.++..||+|..|.+++.++++|++++..+...+    .
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~  241 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP  241 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence            455667788899999999999999999999999999999999999999999999999999999999995321100    0


Q ss_pred             hchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 043912          151 FQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND----RVEVVCMIGVYGLLVSSIQLSMLELKSLELV  215 (255)
Q Consensus       151 ~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  215 (255)
                      .+....||+++++|| +.||+|+++.||...+++    .-.+.+..|++..++.+|+..+++....|++
T Consensus       242 a~~~llG~llaL~sA-~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F  309 (416)
T KOG2765|consen  242 ASRPLLGNLLALLSA-LLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERF  309 (416)
T ss_pred             ccchhHHHHHHHHHH-HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcc
Confidence            112379999999999 999999999999877663    3345688899999999988887765444443

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.65  E-value=3.9e-13  Score=117.93  Aligned_cols=166  Identities=19%  Similarity=0.212  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhch
Q 043912           23 TFAATNFTSSFIANLGVDAPVTQSAF-SYFTLALVYGGILLYRR---QRLQVSWYWYLLLGFVDLQG-NFLANKAYQFTS   97 (255)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~~~~ll~~~~~~~---~~~~~~~~~~l~~g~~~~~~-~~~~~~al~~Ts   97 (255)
                      +.|+.+....+...++ +.|.....+ |.........+...+++   ++.+++++...+.+.+.... +.+++.++++++
T Consensus        17 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (292)
T COG0697          17 LLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTS   95 (292)
T ss_pred             HHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6666666666555544 345555544 76666555333322211   11222233455555555554 567889999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHH-HHccccCchhhHHHHHHHHHHHHHhhcccchhhhch--hhHHHHHHHHhHHHHHHHHHH
Q 043912           98 ITSVTLLDGCTIAWALILTR-LLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQD--LYWAIYLSLLGPCSMLSFSLQ  174 (255)
Q Consensus        98 ~~~a~ll~~~~p~~v~ll~~-l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~--~~~Gdll~l~sa~~~~A~~~v  174 (255)
                      +++++.+.++.|+++.++++ +++|||++++++.|+.+++.|+.++..+   +..++  ...|+++++.++ ++||.+++
T Consensus        96 ~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~---~~~~~~~~~~g~~~~l~a~-~~~a~~~~  171 (292)
T COG0697          96 ASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG---GGGGGILSLLGLLLALAAA-LLWALYTA  171 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC---CCcchhHHHHHHHHHHHHH-HHHHHHHH
Confidence            99999999999999999997 7779999999999999999999999422   12211  358999999999 99999999


Q ss_pred             HHHHhhcCCCHHHHHH-HHHH
Q 043912          175 NLEYFVKKNDRVEVVC-MIGV  194 (255)
Q Consensus       175 ~~k~~~~~~~~~~~~~-~~~~  194 (255)
                      ..|+.. +.++..... ++..
T Consensus       172 ~~~~~~-~~~~~~~~~~~~~~  191 (292)
T COG0697         172 LVKRLS-RLGPVTLALLLQLL  191 (292)
T ss_pred             HHHHhc-CCChHHHHHHHHHH
Confidence            999877 666655554 4443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.45  E-value=1.7e-11  Score=107.40  Aligned_cols=178  Identities=15%  Similarity=0.077  Sum_probs=136.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccch
Q 043912           69 QVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFF  148 (255)
Q Consensus        69 ~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~  148 (255)
                      +++..++.++++++...|.+.+.++++.+++.-+++.++-++++++++++++|+|++++||.++.+-++|+.++-.+...
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999988532111


Q ss_pred             h----hh---------chhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 043912          149 Q----VF---------QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSIQLSMLELKSLE  213 (255)
Q Consensus       149 ~----~~---------~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  213 (255)
                      +    ..         .+...|..+++.++ ++-|+..++.||..|+.+  .........++|.++..+.....+.+...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~-~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~  172 (244)
T PF04142_consen   94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAA-FLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS  172 (244)
T ss_pred             ccccccccccccccccchhHhHHHHHHHHH-HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            1    00         11368999999999 999999999999998754  34445677778888876554443332222


Q ss_pred             cc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912          214 LV----KWSTDIILGFVGYAVSCFMFYTLATFVLKVILLIDH  251 (255)
Q Consensus       214 ~~----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  251 (255)
                      +-    .|+.+.    ...++........+..+.||.+.|-+
T Consensus       173 ~~g~f~G~~~~~----~~~i~~~a~gGllva~v~KyadnI~K  210 (244)
T PF04142_consen  173 ESGFFHGYSWWV----WIVIFLQAIGGLLVAFVLKYADNIVK  210 (244)
T ss_pred             cCCchhhcchHH----HHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence            11    233332    23455677788889999999998854

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.44  E-value=9.7e-11  Score=105.46  Aligned_cols=173  Identities=19%  Similarity=0.193  Sum_probs=133.5

Q ss_pred             HHHhcCCCh--hHHHHHHHHHHHHHHHHHHHHH-H-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhH
Q 043912           33 FIANLGVDA--PVTQSAFSYFTLALVYGGILLY-R-RQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCT  108 (255)
Q Consensus        33 ~~~~~~~~~--P~~~~~~~~~~~~~~ll~~~~~-~-~~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~  108 (255)
                      ++...+...  |...++..+...++.-.+.... + +++.+.+++.+...++++.....+.+.+++|.+.....++.+..
T Consensus        21 ~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~  100 (303)
T PF08449_consen   21 KIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSK  100 (303)
T ss_pred             HHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhH
Confidence            444433334  7788887777665543333322 2 23456667888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccc-hhhhch-----hhHHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 043912          109 IAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFF-FQVFQD-----LYWAIYLSLLGPCSMLSFSLQNLEYFVKK  182 (255)
Q Consensus       109 p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~-~~~~~~-----~~~Gdll~l~sa~~~~A~~~v~~k~~~~~  182 (255)
                      |+.+++++.+++|||++++|++++++..+|+++...... .+..++     ...|+.+.+++. ++.|.+.+++||..++
T Consensus       101 ~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl-~~~a~~~~~qe~~~~~  179 (303)
T PF08449_consen  101 PIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSL-LLDAFTGVYQEKLFKK  179 (303)
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998742111 111111     134999999999 9999999999999875


Q ss_pred             C--CHHHHHHHHHHHHHHHHHHHHHH
Q 043912          183 N--DRVEVVCMIGVYGLLVSSIQLSM  206 (255)
Q Consensus       183 ~--~~~~~~~~~~~~~~~~~~~~~~~  206 (255)
                      +  ++.+.+....+++.+...+....
T Consensus       180 ~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  180 YGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  47788888888888887766655

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.28  E-value=9.8e-10  Score=98.51  Aligned_cols=170  Identities=12%  Similarity=0.070  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH-HHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHh
Q 043912           17 GQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGIL-LYRRQRL--QVSWYWYLLLGFVDLQGNFLANKAY   93 (255)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~-~~~~~~~--~~~~~~~l~~g~~~~~~~~~~~~al   93 (255)
                      ..+++.+.||++.+..|... +.+.+  +.. +..+.++++.... ..++++.  ++.+...++.|.+...+|.+++.+.
T Consensus         5 ~~lia~~~wGs~g~~~k~~~-g~~~~--~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai   80 (290)
T TIGR00776         5 IALIPALFWGSFVLINVKIG-GGPYS--QTL-GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM   80 (290)
T ss_pred             HHHHHHHHHhhhHHHHhccC-CCHHH--HHH-HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            34556677888777776554 44333  332 4333444332222 2232121  1122234455566667788999999


Q ss_pred             hhchHHHHHHHhh-hHHHHHHHHHHHHccccCchhh----HHHHHHHHHHHHHhhcccchhhh----chhhHHHHHHHHh
Q 043912           94 QFTSITSVTLLDG-CTIAWALILTRLLLGTRYSPLK----LFGAGICMLGLCVCSSMFFFQVF----QDLYWAIYLSLLG  164 (255)
Q Consensus        94 ~~Ts~~~a~ll~~-~~p~~v~ll~~l~l~ek~~~~~----~~gi~l~~~Gv~li~~~~~~~~~----~~~~~Gdll~l~s  164 (255)
                      ++++++.+..+.+ +.|+++.+.+.+++|||.++++    +.|++++++|++++......+..    .+...|..++++|
T Consensus        81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l~s  160 (290)
T TIGR00776        81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLLMS  160 (290)
T ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHHHH
Confidence            9999999988877 8888999999999999999999    99999999998887432111111    1226899999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043912          165 PCSMLSFSLQNLEYFVKKNDRVEVVCMIG  193 (255)
Q Consensus       165 a~~~~A~~~v~~k~~~~~~~~~~~~~~~~  193 (255)
                      + ++|+.|.+..|+.  ++||.+.+..+.
T Consensus       161 g-~~y~~~~~~~~~~--~~~~~~~~~~~~  186 (290)
T TIGR00776       161 T-IGYLVYVVVAKAF--GVDGLSVLLPQA  186 (290)
T ss_pred             H-HHHHHHHHHHHHc--CCCcceehhHHH
Confidence            9 9999999999875  478887755444

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.23  E-value=2.5e-10  Score=88.19  Aligned_cols=95  Identities=23%  Similarity=0.427  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhh------hh-hhhHHHHHHHHHHHH-HHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHH
Q 043912           47 AFSYFTLALVYGGILLYRRQ------RL-QVSWYWYLLLGFVDL-QGNFLANKAYQFTSITSVTLLDGCTIAWALILTRL  118 (255)
Q Consensus        47 ~~~~~~~~~~ll~~~~~~~~------~~-~~~~~~~l~~g~~~~-~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l  118 (255)
                      .+|+....+.+......+++      .. ++++......|.++. ..+.+++.|+++++ +.++.+.+++|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            35666665555444433221      12 233455566677776 45667999999999 58889999999999999999


Q ss_pred             HccccCchhhHHHHHHHHHHHHHh
Q 043912          119 LLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus       119 ~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++|||++++++.|++++++|++++
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li  104 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILI  104 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.18  E-value=2.9e-10  Score=87.47  Aligned_cols=117  Identities=23%  Similarity=0.318  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH--Hhh--hh-hhhHHHHHHHHHHH-HHHHHHHHHHhhhch
Q 043912           24 FAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLY--RRQ--RL-QVSWYWYLLLGFVD-LQGNFLANKAYQFTS   97 (255)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~--~~~--~~-~~~~~~~l~~g~~~-~~~~~~~~~al~~Ts   97 (255)
                      .|+.+.+..+...++ .+|......|.....+ +++....  +++  +. ++++......|.+. ..++.+++.++++++
T Consensus         2 ~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    2 SWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             eeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            355556666555444 4577888888887775 3333222  221  22 33445566677775 555778999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           98 ITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        98 ~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++.++.+.++.|+++.+++++++|||++++++.|+.+.+.|++++
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.05  E-value=2e-11  Score=106.03  Aligned_cols=179  Identities=18%  Similarity=0.234  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 043912           20 ASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ-----RLQVSWYWYLLLGFVDLQGNFLANKAYQ   94 (255)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~-----~~~~~~~~~l~~g~~~~~~~~~~~~al~   94 (255)
                      ++..+-.+.+++++..+   ..|..+.-.|.+.-.++..|-.+++++     +-++.|  +++=|+.++.+-+..+.+++
T Consensus        45 vs~ff~~~~vv~t~~~e---~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~--LiLRg~mG~tgvmlmyya~~  119 (346)
T KOG4510|consen   45 VSYFFNSCMVVSTKVLE---NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKW--LILRGFMGFTGVMLMYYALM  119 (346)
T ss_pred             hHHHHhhHHHhhhhhhc---cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEE--EEeehhhhhhHHHHHHHHHh
Confidence            34677777777777664   245566666643333332333333332     223333  34456777777777889999


Q ss_pred             hchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc---cchhhhc-------hhhHHHHHHHHh
Q 043912           95 FTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM---FFFQVFQ-------DLYWAIYLSLLG  164 (255)
Q Consensus        95 ~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~---~~~~~~~-------~~~~Gdll~l~s  164 (255)
                      |.+.+.+++++.++|.++.+++|.+||||.|+...+|..+.+.|+++|..+   +|.+...       .+.+|..-++.+
T Consensus       120 ~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s  199 (346)
T KOG4510|consen  120 YMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISS  199 (346)
T ss_pred             hcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHh
Confidence            999999999999999999999999999999999999999999999999753   2222211       237888999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 043912          165 PCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQL  204 (255)
Q Consensus       165 a~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (255)
                      + ++-|--.++.|+.-|+.+....+...+..+.+.+.+..
T Consensus       200 ~-lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~  238 (346)
T KOG4510|consen  200 V-LFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGC  238 (346)
T ss_pred             H-hhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHH
Confidence            9 77777777888876766543333333444444444333

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.99  E-value=4.6e-09  Score=81.93  Aligned_cols=126  Identities=22%  Similarity=0.235  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h---hhhhHHHHHHHHHHHHH-HHHHH
Q 043912           16 IGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R---LQVSWYWYLLLGFVDLQ-GNFLA   89 (255)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~---~~~~~~~~l~~g~~~~~-~~~~~   89 (255)
                      +.-+++.++++-+.+.+|..-++.+ |-+.+..|.......+..++...++  .   ..++.+.++.++.+... +..++
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y   84 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence            4456677889999999999988775 6788999988776655544433322  1   23333445544444444 45678


Q ss_pred             HHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           90 NKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        90 ~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      +.+++.-+++...=+..+.|.++.+++++++|||++.++++|+.+-.+|.+++
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv  137 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV  137 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence            99999999999999999999999999999999999999999999999999876

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.94  E-value=4.3e-08  Score=85.52  Aligned_cols=130  Identities=18%  Similarity=0.223  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh--h-hhhHHHHHHHHHHHH-HH
Q 043912           10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR--L-QVSWYWYLLLGFVDL-QG   85 (255)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~--~-~~~~~~~l~~g~~~~-~~   85 (255)
                      ...+..+..+.+++++..+...++..++....+......+.....+++.|.....++.  . ++++...+..+.++. .+
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA  205 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            4567788888888888888887776643211223344455666666666665433222  1 234444566676664 45


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHH
Q 043912           86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGL  139 (255)
Q Consensus        86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv  139 (255)
                      +.+++.++++++++.++.+.++.|+++++++++++|||++..++.|..+.+.|+
T Consensus       206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            677999999999999999999999999999999999999999999999999986

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.90  E-value=1.6e-08  Score=84.78  Aligned_cols=132  Identities=17%  Similarity=0.255  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHH
Q 043912           79 GFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAI  158 (255)
Q Consensus        79 g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gd  158 (255)
                      .++....|+.+..+++..|++.++-+.+.+-.|+-+++++.+|+|+...|+++..+++.|++++..  ..+...|...|.
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay--~DN~~a~e~iGi  137 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY--ADNEHADEIIGI  137 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe--ccchhhhhhhhH
Confidence            455666799999999999999999999999999999999999999999999999999999999831  122345668999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhcCCC---HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 043912          159 YLSLLGPCSMLSFSLQNLEYFVKKND---RVEVVCMIGVYGLLVSSIQLSMLELKSLE  213 (255)
Q Consensus       159 ll~l~sa~~~~A~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  213 (255)
                      .++++|| ..-|+|.+..|+.....+   .-.++...+++...+...+..++....++
T Consensus       138 ~~AV~SA-~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE  194 (290)
T KOG4314|consen  138 ACAVGSA-FMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVE  194 (290)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchH
Confidence            9999999 999999999999887643   45567778888888877776665543333

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.85  E-value=1.4e-06  Score=76.97  Aligned_cols=183  Identities=16%  Similarity=0.037  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH---HHHHhhh---hhhhHH--HHHHHHHHHH
Q 043912           12 HLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI---LLYRRQR---LQVSWY--WYLLLGFVDL   83 (255)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~---~~~~~~~---~~~~~~--~~l~~g~~~~   83 (255)
                      +|+..+ +.|-+.||--..-.++.+.   .|.....-.+.+-+.+++..   ..++++.   ..++.+  .....+....
T Consensus         7 ~Gil~~-l~Ay~lwG~lp~y~kll~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           7 KGILLA-LLAYLLWGLLPLYFKLLEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             chhHHH-HHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            455544 4455667766666666642   34445444555444432221   1233222   222222  2334444445


Q ss_pred             HHHH-HHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHH
Q 043912           84 QGNF-LANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSL  162 (255)
Q Consensus        84 ~~~~-~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l  162 (255)
                      ..|+ .+.+|.+.-.+.++++=+..+|.+..+++++|+|||+++.|++++.++.+||....      ...++..  ..++
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~------~~~g~lp--wval  154 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT------WLLGSLP--WVAL  154 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH------HHcCCCc--HHHH
Confidence            5676 57899999999999999999999999999999999999999999999999999873      1122211  2344


Q ss_pred             HhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043912          163 LGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLEL  209 (255)
Q Consensus       163 ~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  209 (255)
                      .=+ ++|+.|-..-|+.  +.|+.+-.+..+++-.+.+.......+.
T Consensus       155 ~la-~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~  198 (293)
T COG2962         155 ALA-LSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLAD  198 (293)
T ss_pred             HHH-HHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhc
Confidence            456 8899999765543  5677777777776666666544444444

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.79  E-value=7.5e-08  Score=87.01  Aligned_cols=207  Identities=15%  Similarity=0.201  Sum_probs=148.4

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHh-h--h--hhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHH
Q 043912           38 GVDAPVTQSAFSYFTLALVYGGILLYRR-Q--R--LQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWA  112 (255)
Q Consensus        38 ~~~~P~~~~~~~~~~~~~~ll~~~~~~~-~--~--~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v  112 (255)
                      ++.-|...+.+.....++........+- +  +  .+..+...+.+|++...+..+.+.++.+.+++-...+-+++|+++
T Consensus        44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t  123 (316)
T KOG1441|consen   44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFT  123 (316)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhH
Confidence            6778888888865555544322211111 1  1  234577888899999989999999999999999999999999999


Q ss_pred             HHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhc----CCCHHHH
Q 043912          113 LILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVK----KNDRVEV  188 (255)
Q Consensus       113 ~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~----~~~~~~~  188 (255)
                      .++++++.+|++++..++.+.....|+.+-.   .. +.+-+..|...++.+- +..+..+++.|+..+    +.|+.+.
T Consensus       124 vl~~~~~~~~~~s~~~~lsL~piv~GV~ias---~~-e~~fn~~G~i~a~~s~-~~~al~~I~~~~ll~~~~~~~~~~~l  198 (316)
T KOG1441|consen  124 VLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS---VT-ELSFNLFGFISAMISN-LAFALRNILSKKLLTSKGESLNSMNL  198 (316)
T ss_pred             HHHHHHHhCCCCcceEEEEEEEeeeeEEEee---ec-cccccHHHHHHHHHHH-HHHHHHHHHHHHhhhccccccCchHH
Confidence            9999999999999999999888888887772   11 1122478999999999 999999999998873    2567888


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hcccc---ccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912          189 VCMIGVYGLLVSSIQLSML-ELKSL---ELVKWSTDII-LGFVGYAVSCFMFYTLATFVLKVILLIDH  251 (255)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~-e~~~~---~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  251 (255)
                      ...+.-.+.....+|.... |.+..   ...+|+.... ..+..  +....+|...=.++...|++=|
T Consensus       199 l~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--v~~f~~Nls~f~~ig~tSalT~  264 (316)
T KOG1441|consen  199 LYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS--VLAFLLNLSAFLVIGRTSALTY  264 (316)
T ss_pred             HHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH--HHHHHHHHHHHHHHcccCchhh
Confidence            8777777777776454444 44333   2224443332 22222  6667777777667776666543

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.71  E-value=2.8e-05  Score=70.60  Aligned_cols=176  Identities=13%  Similarity=0.065  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccch--
Q 043912           71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFF--  148 (255)
Q Consensus        71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~--  148 (255)
                      +..+..+.+++...-|.+++.++.+-+++..++..++-++-+++++.++||||++++||.++++.++|+.++--+...  
T Consensus        91 ~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~  170 (345)
T KOG2234|consen   91 ETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT  170 (345)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            345667778888777778999999999999999999999999999999999999999999999999999999310011  


Q ss_pred             hhh-----chhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHHHhhccccc--cc--cc
Q 043912          149 QVF-----QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSIQLSMLELKSLE--LV--KW  217 (255)
Q Consensus       149 ~~~-----~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~--~~  217 (255)
                      +..     .+...|....+.++ ..=+...++.||..|+-+  .......+.++|.+++......-+.....  .+  .|
T Consensus       171 ~a~~~~~~~n~~~G~~avl~~c-~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~  249 (345)
T KOG2234|consen  171 GAKSESSAQNPFLGLVAVLVAC-FLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGY  249 (345)
T ss_pred             CccCCCcccchhhhHHHHHHHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccc
Confidence            011     11256777777666 999999999999987643  33334566778888876555554433221  11  34


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912          218 STDIILGFVGYAVSCFMFYTLATFVLKVILLIDH  251 (255)
Q Consensus       218 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  251 (255)
                      +...+..    ++.......++..+.||-+-|-|
T Consensus       250 s~~vw~v----Vl~~a~gGLlvs~v~KyADnIlK  279 (345)
T KOG2234|consen  250 SSIVWLV----VLLNAVGGLLVSLVMKYADNILK  279 (345)
T ss_pred             cHHHHHH----HHHHhccchhHHHHHHHhHHHHH
Confidence            4333322    33444555666677777665543

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.62  E-value=2.2e-06  Score=76.74  Aligned_cols=130  Identities=13%  Similarity=0.049  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh--hh-hhHHHHHHHHHHHHHH-H
Q 043912           11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR--LQ-VSWYWYLLLGFVDLQG-N   86 (255)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~--~~-~~~~~~l~~g~~~~~~-~   86 (255)
                      ..|.+++-..+++++..+...++..++  ..|.... ......++++.|+.....+.  .. ..+...+.+|++.... +
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAE--HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence            357777878887877777777777543  2343333 33344445555554332211  11 1122235667766554 5


Q ss_pred             HHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912           87 FLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS  143 (255)
Q Consensus        87 ~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~  143 (255)
                      .+++.++++.++++++++.++.|++..++++++++|+++..+++|..+.++|++...
T Consensus       224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999998873

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.58  E-value=2.9e-05  Score=67.57  Aligned_cols=197  Identities=13%  Similarity=-0.005  Sum_probs=125.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHH
Q 043912           40 DAPVTQSAFSYFTLALVYGGILLY-RRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRL  118 (255)
Q Consensus        40 ~~P~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l  118 (255)
                      .-|.-.+..|-.+.+++++++... |++.-++++...+..|.....-|.++|.+++..+.+.+.-+-.+.|+.+..+   
T Consensus        38 vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~---  114 (292)
T COG5006          38 VGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALL---  114 (292)
T ss_pred             cChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHH---
Confidence            345677788888888877666432 3333466777777888887777999999999999999999999999876554   


Q ss_pred             HccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 043912          119 LLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLL  198 (255)
Q Consensus       119 ~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~  198 (255)
                       ..+|.  ++.+-+.+++.|+.++.-. +.+.++-+..|..+++.++ .+||.|.+..||.-+..+...-+..-+.++.+
T Consensus       115 -~sRr~--~d~vwvaLAvlGi~lL~p~-~~~~~~lDp~Gv~~Al~AG-~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAav  189 (292)
T COG5006         115 -SSRRL--RDFVWVALAVLGIWLLLPL-GQSVWSLDPVGVALALGAG-ACWALYIVLGQRAGRAEHGTAGVAVGMLVAAL  189 (292)
T ss_pred             -hccch--hhHHHHHHHHHHHHhheec-cCCcCcCCHHHHHHHHHHh-HHHHHHHHHcchhcccCCCchHHHHHHHHHHH
Confidence             33443  4455567888999888421 1122233479999999999 99999999999876455544445545556666


Q ss_pred             HHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043912          199 VSSIQLSMLELKSLELVKWSTDIILGFVGYAVSCFMFYTLATFVLKVIL  247 (255)
Q Consensus       199 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  247 (255)
                      +..|.-. ... ...-.+|+-....+-++ .+|...=|.+=+..++...
T Consensus       190 iv~Pig~-~~a-g~~l~~p~ll~laLgva-vlSSalPYsLEmiAL~rlp  235 (292)
T COG5006         190 IVLPIGA-AQA-GPALFSPSLLPLALGVA-VLSSALPYSLEMIALRRLP  235 (292)
T ss_pred             HHhhhhh-hhc-chhhcChHHHHHHHHHH-HHhcccchHHHHHHHhhCC
Confidence            6543322 111 11112332222222222 3355555666666665544

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.55  E-value=4e-06  Score=75.02  Aligned_cols=128  Identities=14%  Similarity=0.018  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHH-H
Q 043912           12 HLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQR-----LQVSWYWYLLLGFVDLQ-G   85 (255)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~-----~~~~~~~~l~~g~~~~~-~   85 (255)
                      .|...+-..+++++..+...++..+.   .|...+.+.....+..+.++.......     ..+.+...+..+++... +
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            35555556666666666665554421   233444555555555555543322111     12345555666776554 4


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      +.+++.++++.++++++.+..+.|++.+++++++++|+++..+++|..+.+.|+.++
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~  283 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLV  283 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            668999999999999999999999999999999999999999999999999999888

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.48  E-value=8.8e-06  Score=75.21  Aligned_cols=132  Identities=11%  Similarity=0.100  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHhhhh-------hhhHHHHHHHHHHH
Q 043912           11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI-LLYRRQRL-------QVSWYWYLLLGFVD   82 (255)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~-~~~~~~~~-------~~~~~~~l~~g~~~   82 (255)
                      +.|.++.-..+++++..+...++...+ ...+...+.+...+..+...+. ....+...       .......+..++..
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t  266 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence            446677777777777677767666543 3333343444333333332222 22111111       11111222334433


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912           83 LQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS  143 (255)
Q Consensus        83 ~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~  143 (255)
                      ..++.+++.++++.+++.+++...+.|++..++++++++|+++..+++|.++.++|+++..
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            3456679999999999999999999999999999999999999999999999999999984

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.43  E-value=1.1e-05  Score=72.21  Aligned_cols=125  Identities=18%  Similarity=0.031  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh---hhh-hhHHHHHHHHHHHHHHHHH
Q 043912           13 LLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ---RLQ-VSWYWYLLLGFVDLQGNFL   88 (255)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~---~~~-~~~~~~l~~g~~~~~~~~~   88 (255)
                      |....-+.+++++..+...++..++ . .|.....   ......+.+.......   ... +.+...+..++....++.+
T Consensus       157 G~~~~l~aa~~~A~~~v~~k~~~~~-~-~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        157 SYGLAFIGAFIWAAYCNVTRKYARG-K-NGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCC-C-CchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666777777777776543 2 2332211   2222222222122221   112 2233344455444446788


Q ss_pred             HHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           89 ANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        89 ~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++.+++++++++++.+.++.|++..++++++++|+++..+++|.++.+.|+.+.
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~  285 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999999999999999999999877

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.34  E-value=4.7e-05  Score=68.29  Aligned_cols=131  Identities=18%  Similarity=0.135  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHHHHHHHHHHHHHHHH-HHhh--------hh-hhhHHHHHHH
Q 043912           11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPV--TQSAFSYFTLALVYGGILL-YRRQ--------RL-QVSWYWYLLL   78 (255)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~~~~ll~~~~-~~~~--------~~-~~~~~~~l~~   78 (255)
                      ..|..+..+.+++++..+...++..++. +.|.  .......+.....+..... ...+        .. .+.+...+.+
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  220 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL  220 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence            3577788888888888888888765432 2222  2222222222221111111 1110        11 1335555667


Q ss_pred             HHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           79 GFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        79 g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      |++.... +.+++.+++..++++++.+..+.|++..++++++++|+++..+++|..+.++|+.+.
T Consensus       221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~  285 (299)
T PRK11453        221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence            7666654 567889999999999999999999999999999999999999999999999999876

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.33  E-value=6.2e-06  Score=63.66  Aligned_cols=64  Identities=14%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             HHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           79 GFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        79 g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++++... ..++..+++..+++.+--+.++.|+++.+++++++|||++++|++|+.+.++|++++
T Consensus        43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3344443 567889999999999888888999999999999999999999999999999999988

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.32  E-value=6.3e-05  Score=60.26  Aligned_cols=127  Identities=13%  Similarity=0.192  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHHHHHHHHH-Hhhh-------h--------hhhHH
Q 043912           15 SIGQLASLTFAATNFTSSFIANL-----GVDAPVTQSAFSYFTLALVYGGILLY-RRQR-------L--------QVSWY   73 (255)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~P~~~~~~~~~~~~~~ll~~~~~-~~~~-------~--------~~~~~   73 (255)
                      ...-..+++.+--+...++..++     ....|..+....-...++.+.|.... ++.+       .        .+...
T Consensus         3 ~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T PF03151_consen    3 ILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF   82 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence            33444455556666666665554     23345444444444444445554322 1110       1        12233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHH
Q 043912           74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCV  141 (255)
Q Consensus        74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~l  141 (255)
                      ..+..|++....|...+..+++|++...+++...-.+.+.+++.++++|+++..++.|+.++++|++.
T Consensus        83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            44455666677788888999999999999999999999999999999999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.29  E-value=8.6e-06  Score=72.39  Aligned_cols=69  Identities=25%  Similarity=0.228  Sum_probs=59.1

Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           74 WYLLLGFV-DLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        74 ~~l~~g~~-~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ..+..+.+ ...++.+++.++++.++++++.+.++.|++..+++++++|||++..+++|..+.++|+.++
T Consensus       212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            33444433 4456778999999999999999999999999999999999999999999999999999763

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.24  E-value=4.8e-05  Score=68.17  Aligned_cols=68  Identities=10%  Similarity=0.108  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           75 YLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        75 ~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      .+..|.....++.+++.++++.+++.++.+.+..|++..++++++++|+++..++.|..+.++|+.++
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            33445555566888999999999999999999999999999999999999999999999999888887

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.22  E-value=3.9e-05  Score=68.77  Aligned_cols=129  Identities=9%  Similarity=0.077  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 043912           10 TLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQ---SAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGN   86 (255)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~---~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~   86 (255)
                      ..+|+..+.+.++..+.-....+...    ..|...   ...-..+.+.++.+...+.++...+..+..++.|++...++
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~  225 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAFG----VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGN  225 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcC----CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence            35699999999888866666655443    233333   22222333333322221112222334445556888876667


Q ss_pred             HHHHHHhh-hchHHHHHHHhhhHHHHHHHHHHHHccccCchhhH----HHHHHHHHHHHHh
Q 043912           87 FLANKAYQ-FTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKL----FGAGICMLGLCVC  142 (255)
Q Consensus        87 ~~~~~al~-~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~----~gi~l~~~Gv~li  142 (255)
                      .++..+.+ +..++.++.+.+..|+...+.+.+++||+.+++|+    +|.++.+.|+.++
T Consensus       226 ~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~  286 (290)
T TIGR00776       226 FFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL  286 (290)
T ss_pred             HHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence            78889999 99999999999999999999999999999999999    9999999999887

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.22  E-value=3.5e-05  Score=69.11  Aligned_cols=131  Identities=15%  Similarity=0.151  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh-hh-hh----h-----h---HHH-HH
Q 043912           12 HLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR-QR-LQ----V-----S---WYW-YL   76 (255)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~-~~-~~----~-----~---~~~-~l   76 (255)
                      .|.+...+.+++.+..+...++..++.-..|...+.......++.++|+..... .. ..    .     .   .+. .+
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL  224 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence            355666666666666555555554311123444445444455555556543211 11 00    0     0   111 11


Q ss_pred             HHHHHHH-HHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           77 LLGFVDL-QGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        77 ~~g~~~~-~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ..+.... ..|.+.+.+++.++++++++.....|+++.++++++++|+++..+++|..+.++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~  291 (302)
T TIGR00817       225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY  291 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            2222111 12345667899999999999999999999999999999999999999999999999887

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.19  E-value=0.00016  Score=63.10  Aligned_cols=129  Identities=26%  Similarity=0.292  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-HHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHH-HH
Q 043912           11 LHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSA-FSYFTLALVYGGILLYRR--QRLQVSWYWYLLLGFVDLQ-GN   86 (255)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~~~~ll~~~~~~~--~~~~~~~~~~l~~g~~~~~-~~   86 (255)
                      ..+...+...++++...+...++.. +  ..+..... +..........+......  +...+.+......|++... ++
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~  229 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAY  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777776666666555 2  12222222 221112222222221111  1223456666777777774 67


Q ss_pred             HHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           87 FLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        87 ~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      .+++.+++..+++..+.+..+.|++.+++++++++|+++.+++.|..+.++|+.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~  285 (292)
T COG0697         230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLA  285 (292)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999887

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.00  E-value=0.00049  Score=63.35  Aligned_cols=132  Identities=8%  Similarity=0.029  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHHHHHHHHH-hhh----h-------hh-hH
Q 043912           11 LHLLSIGQLASLTFAATNFTSSFIANLGV-----DAPVTQSAFSYFTLALVYGGILLYR-RQR----L-------QV-SW   72 (255)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~P~~~~~~~~~~~~~~ll~~~~~~-~~~----~-------~~-~~   72 (255)
                      +.|.+.+.+.+++.+.-+...++..++..     ..+...........++.++|+.... .++    .       .. .+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            34777777777777777777776654211     1122222222334444455654321 110    0       00 11


Q ss_pred             HHHHHHHHHHHHHHH----HHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           73 YWYLLLGFVDLQGNF----LANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        73 ~~~l~~g~~~~~~~~----~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+...+.....++    +.+.+++.+++.+.++...+-|+++.++++++++|+++..+++|.++.+.|+.+-
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            111111222222233    3446999999999999999999999999999999999999999999999999876

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.87  E-value=0.0057  Score=54.26  Aligned_cols=133  Identities=11%  Similarity=0.057  Sum_probs=96.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH-HHhhhHHHHHHHHHHHHccccCchhhHH----HHHHHHHHHHHhhc
Q 043912           70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVT-LLDGCTIAWALILTRLLLGTRYSPLKLF----GAGICMLGLCVCSS  144 (255)
Q Consensus        70 ~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~-ll~~~~p~~v~ll~~l~l~ek~~~~~~~----gi~l~~~Gv~li~~  144 (255)
                      +.+...++.|++...++..++.++++..++++. +=+.+.-+-+.+.+.++++|--+..++.    ++++-++|+++...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            456667788888888999999999998888754 4445667778899999999998887765    67777788877753


Q ss_pred             ccchhh----hchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043912          145 MFFFQV----FQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSM  206 (255)
Q Consensus       145 ~~~~~~----~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (255)
                      +...+.    .++...|....+++. +.|..|.++.|.  .+.|+.+...-|. .|++++......
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~st-igy~~Y~~~~~~--~~~~~~~~~lPqa-iGm~i~a~i~~~  184 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLIST-IGYWIYSVIPKA--FHVSGWSAFLPQA-IGMLIGAFIFNL  184 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHH-HHHHHHHHHHHh--cCCChhHhHHHHH-HHHHHHHHHHhh
Confidence            211111    112356899999999 999999998765  4567887776665 455555444444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.0037  Score=55.92  Aligned_cols=164  Identities=15%  Similarity=0.201  Sum_probs=121.5

Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHH
Q 043912           38 GVDAPVTQSAFSYFTLALVYGGILLYRRQ--RLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALIL  115 (255)
Q Consensus        38 ~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll  115 (255)
                      -++.|-+..+.+++.+.++=......+++  ..+++++.+-.+++.+....++.+.|++|.+=-...+=-+.=-+=|+++
T Consensus        47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm  126 (327)
T KOG1581|consen   47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM  126 (327)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence            35677788888877665542222222222  2367788999999999999999999999987666655555555557899


Q ss_pred             HHHHccccCchhhHHHHHHHHHHHHHhh-cccchhh---h-chhhHHHHHHHHhHHHHHHHHHHHHHHhhcC--CCHHHH
Q 043912          116 TRLLLGTRYSPLKLFGAGICMLGLCVCS-SMFFFQV---F-QDLYWAIYLSLLGPCSMLSFSLQNLEYFVKK--NDRVEV  188 (255)
Q Consensus       116 ~~l~l~ek~~~~~~~gi~l~~~Gv~li~-~~~~~~~---~-~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~--~~~~~~  188 (255)
                      +.++-|+|++.++.+-..+.-.|+.+-+ .+...+.   + .+..+|..++...- ++-++.+.-+++..++  .++.++
T Consensus       127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L-~fDgfTn~tQd~lf~~~k~s~~~m  205 (327)
T KOG1581|consen  127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYL-LFDGFTNATQDSLFKKYKVSSLHM  205 (327)
T ss_pred             HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHH-HHHhhHHhHHHHHhccCCccHhHH
Confidence            9999999999999999999999987653 2111111   1 12479999999999 9999999999888875  457888


Q ss_pred             HHHHHHHHHHHHHH
Q 043912          189 VCMIGVYGLLVSSI  202 (255)
Q Consensus       189 ~~~~~~~~~~~~~~  202 (255)
                      +.-+-++..+.+..
T Consensus       206 M~~vNLf~~i~~~~  219 (327)
T KOG1581|consen  206 MFGVNLFSAILNGT  219 (327)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888888753

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.67  E-value=0.00043  Score=54.84  Aligned_cols=68  Identities=21%  Similarity=0.249  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHH--HccccCchhhHHHHHHHHHHHHHh
Q 043912           75 YLLLGFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRL--LLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        75 ~l~~g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l--~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      .+..|+..... +.++..+++..+++.+.-+.+..+..+.+.++.  ++||++|..|++|+.+.++|++++
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv  120 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLI  120 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            45566666554 567999999999999887778888888888885  899999999999999999999998

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.61  E-value=0.001  Score=59.55  Aligned_cols=178  Identities=13%  Similarity=0.132  Sum_probs=107.1

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHHHHHHhh----hhhhhHHHHH----HHHHHHHHHHHHHHHHhhhchH
Q 043912           28 NFTSSFIANLGVDAPVTQSAFSYFTLALVY-GGILLYRRQ----RLQVSWYWYL----LLGFVDLQGNFLANKAYQFTSI   98 (255)
Q Consensus        28 ~~~~~~~~~~~~~~P~~~~~~~~~~~~~~l-l~~~~~~~~----~~~~~~~~~l----~~g~~~~~~~~~~~~al~~Ts~   98 (255)
                      .+..+...+ +++-|.+.+..-.+.-.+.- +....++++    +.+-+|..++    ..|+.....-.+.+++++|+|.
T Consensus        32 tf~~~~~~~-~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtl  110 (349)
T KOG1443|consen   32 TFYFKWLTK-NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTL  110 (349)
T ss_pred             HHHhhhhhc-CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeee
Confidence            344444443 47778777665555333221 111122221    1122343333    4444433334467899999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhchhhHHHHHHHHhHH---HHHHHHHHH
Q 043912           99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQDLYWAIYLSLLGPC---SMLSFSLQN  175 (255)
Q Consensus        99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~~~~~Gdll~l~sa~---~~~A~~~v~  175 (255)
                      +--++.-+..|+|+.+.+.+|-=||+++.-..-+.+-.+|+.+....    ..+=+..|..++..|+|   +=|+....+
T Consensus       111 SlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K----sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~l  186 (349)
T KOG1443|consen  111 SLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK----STQFNIEGFFLVLAASLLSGLRWAFTQML  186 (349)
T ss_pred             eeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec----ccceeehhHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999999999999999988999999999999989999887311    00112568877777651   446665444


Q ss_pred             HHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043912          176 LEYFV-KKNDRVEVVCMIGVYGLLVSSIQLSMLELK  210 (255)
Q Consensus       176 ~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  210 (255)
                      .++.. .+.+|.+.+.-..-+..+...|....+|..
T Consensus       187 l~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  187 LRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             HhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence            44332 334566555444444444455667788864

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.023  Score=51.17  Aligned_cols=125  Identities=13%  Similarity=0.075  Sum_probs=93.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhh
Q 043912           71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQV  150 (255)
Q Consensus        71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~  150 (255)
                      ..++.+...++....-+.-..+++|.++.-.+++-..+|+++++.+..++|.|+++..+.++....+|....   ...|.
T Consensus        76 ~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~---~~~d~  152 (314)
T KOG1444|consen   76 TAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA---AFTDL  152 (314)
T ss_pred             HHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh---ccccc
Confidence            345555666665554455668899999999999999999999999999999999999999999999988877   21111


Q ss_pred             hchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHHHH
Q 043912          151 FQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKN--DRVEVVCMIGVYGLLVS  200 (255)
Q Consensus       151 ~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~  200 (255)
                       +.+..|-.+++... +.-+.+.+..|+..+..  +..+.+..-.+...+..
T Consensus       153 -sf~~~gY~w~~~n~-~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l  202 (314)
T KOG1444|consen  153 -SFNLRGYSWALANC-LTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPL  202 (314)
T ss_pred             -eecchhHHHHHHHH-HHHHHHHHHHHHhhccccccceeEEeehhHHHHHHH
Confidence             22355888999888 99999999999887543  33444444444444433

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.46  E-value=0.0065  Score=46.70  Aligned_cols=60  Identities=20%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           83 LQGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        83 ~~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+++...+++..+++.+ ++-.....+.+.+.+.+++||+++..|++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            3345677888998888764 67777888889999999999999999999999999999887

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.0016  Score=49.63  Aligned_cols=59  Identities=20%  Similarity=0.299  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           84 QGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        84 ~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ..+++...++++.+++.+ ++-.....+-+.+.+++++|||.+..|++|+.+-++|++.+
T Consensus        42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L  101 (106)
T COG2076          42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL  101 (106)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence            345678899999988875 78888899999999999999999999999999999999988

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.30  E-value=0.0023  Score=50.10  Aligned_cols=59  Identities=17%  Similarity=0.262  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           84 QGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        84 ~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...++...++++.+.+.+ ++..+...+.+.+++.+++||+++..|++|+.+-++|++.+
T Consensus        42 ~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l  101 (120)
T PRK10452         42 LSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI  101 (120)
T ss_pred             HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            345677888998888765 56677888899999999999999999999999999999888

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.22  E-value=0.0037  Score=47.73  Aligned_cols=59  Identities=20%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           84 QGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        84 ~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...++...+++..+.+.+ ++-.....+-+.+.+.+++|||++..|++|+.+.++|++.+
T Consensus        41 ~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l  100 (105)
T PRK11431         41 VSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL  100 (105)
T ss_pred             HHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence            345667888988888764 67777888889999999999999999999999999999988

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.17  E-value=0.0043  Score=47.76  Aligned_cols=58  Identities=16%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           85 GNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        85 ~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ..++...+++..+.+.+ ++-.....+.+.+.+++++|||++..|++|+.+-++|++.+
T Consensus        43 sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l  101 (110)
T PRK09541         43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI  101 (110)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            34567788888888765 56677788888999999999999999999999999999998

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.08  E-value=0.0044  Score=55.99  Aligned_cols=119  Identities=18%  Similarity=0.191  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHH
Q 043912            7 TLRTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQ-VSWYWYLLLGFVDLQG   85 (255)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~~~l~~g~~~~~~   85 (255)
                      +.+.++|+.+.-+.++++..+...-++-..+....+     .|.-   -       ..++..+ +.|+..+..   ...+
T Consensus         2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-----~~~~---~-------~~~~~l~~~~W~~G~~~---~~~g   63 (300)
T PF05653_consen    2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-----LRAG---S-------GGRSYLRRPLWWIGLLL---MVLG   63 (300)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cccc---c-------hhhHHHhhHHHHHHHHH---Hhcc
Confidence            356677888888877776655554443332211101     0000   0       0001112 234433322   2334


Q ss_pred             HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912           86 NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS  143 (255)
Q Consensus        86 ~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~  143 (255)
                      +.+.+.|+.+.+++-.+=+.+...++..+++..++|||++++++.|..+++.|..++.
T Consensus        64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv  121 (300)
T PF05653_consen   64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV  121 (300)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence            5566778999999999988999999999999999999999999999999999998874

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.95  E-value=0.014  Score=46.53  Aligned_cols=94  Identities=11%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-------c--hHH
Q 043912          157 AIYLSLLGPCSMLSFSLQNLEYFVKK-------NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELVK-------W--STD  220 (255)
Q Consensus       157 Gdll~l~sa~~~~A~~~v~~k~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-------~--~~~  220 (255)
                      |.++++.|. ++.|+++++.|+..++       .++.+........+.++..+.....|..+..+..       .  +..
T Consensus         1 G~~~~l~s~-~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    1 GFILALASS-LFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             CHHHHHHHH-HHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence            678899999 9999999999987544       4688888888989999988888888875422221       1  224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043912          221 IILGFVGYAVSCFMFYTLATFVLKVILLIDH  251 (255)
Q Consensus       221 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  251 (255)
                      .....+.-++....++...-..++..|++-|
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~  110 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTY  110 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHH
Confidence            4555556666777888888888888888765

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.88  E-value=0.098  Score=46.98  Aligned_cols=70  Identities=19%  Similarity=0.351  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           73 YWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        73 ~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+..++++..+..+.+.-.+.+++...+++..+--+.+.+++.++++++++..+|.|+.+.+.|..+=
T Consensus       226 ~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~  295 (303)
T PF08449_consen  226 LYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY  295 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence            4455666777777666556678888989999999999999999999999999999999999999999875

; GO: 0055085 transmembrane transport

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.78  E-value=0.02  Score=49.80  Aligned_cols=132  Identities=13%  Similarity=0.061  Sum_probs=99.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc---
Q 043912           69 QVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM---  145 (255)
Q Consensus        69 ~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~---  145 (255)
                      +.+-+.+...++....+-...+.+++|.+-....+=-+.-|+=+|+++.++.|++++++|...+++..+|+++-...   
T Consensus        82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K  161 (337)
T KOG1580|consen   82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK  161 (337)
T ss_pred             CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence            34456677777766666666788899987777777778889999999999999999999999999999999987542   


Q ss_pred             cchhhhchhhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHH
Q 043912          146 FFFQVFQDLYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSS  201 (255)
Q Consensus       146 ~~~~~~~~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~  201 (255)
                      .+....++...|+++.++|- .+-+.....+++..+.+.  ..+++...-+|..+...
T Consensus       162 v~g~e~~t~g~GElLL~lSL-~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg  218 (337)
T KOG1580|consen  162 VGGAEDKTFGFGELLLILSL-AMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLG  218 (337)
T ss_pred             cCCCcccccchHHHHHHHHH-HhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhh
Confidence            22222334578999999999 899998888888766543  34555556667666543

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.77  E-value=0.024  Score=50.35  Aligned_cols=128  Identities=10%  Similarity=0.080  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 043912            9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQRLQVSWYWYLLLGFVDLQGNFL   88 (255)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~   88 (255)
                      +.-+++..-.+.++..|.=+.+-+....++.+. +.....-.++.+.++..+.  +++..+++-++-++.|++...+|.+
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~-~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~nil~G~~w~ignl~  211 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAFHVSGWSA-FLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKNILTGLIWGIGNLF  211 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhcCCChhHh-HHHHHHHHHHHHHHHhhcc--cccccccchHHhhHHHHHHHHHHHH
Confidence            344555555555555555555544433333322 1222223233333322211  2223334455667889999999999


Q ss_pred             HHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           89 ANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        89 ~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+.+.-.++.+=.+.++.++...+.+.+++|||=+++++.-+.   +|++++
T Consensus       212 ~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~---~G~~Li  262 (269)
T PF06800_consen  212 YLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL---IGLILI  262 (269)
T ss_pred             HHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH---HHHHHH
Confidence            999999988899989999999999999999999999999886443   444444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.60  E-value=0.52  Score=43.46  Aligned_cols=102  Identities=11%  Similarity=0.111  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccC---c----hhhHHHHHHHHHHHHHh
Q 043912           71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRY---S----PLKLFGAGICMLGLCVC  142 (255)
Q Consensus        71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~---~----~~~~~gi~l~~~Gv~li  142 (255)
                      .+...++.|.+...++..+..+.++..++.. .+-+.++-+...++..++++|-.   +    ..-..|+++.++|+++.
T Consensus        72 ~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~  151 (345)
T PRK13499         72 TLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIV  151 (345)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            3445566778888889999999999888874 46667777788888888887643   2    34567888889999988


Q ss_pred             hc----ccchhh---h--chhhHHHHHHHHhHHHHHHHHH
Q 043912          143 SS----MFFFQV---F--QDLYWAIYLSLLGPCSMLSFSL  173 (255)
Q Consensus       143 ~~----~~~~~~---~--~~~~~Gdll~l~sa~~~~A~~~  173 (255)
                      ..    +...+.   .  .+...|...+++|. +.|+.|+
T Consensus       152 s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisg-i~~~~f~  190 (345)
T PRK13499        152 GRAGQLKERKMGIKKAEEFNLKKGLILAVMSG-IFSACFS  190 (345)
T ss_pred             HHhhhhcccccccccccccchHhHHHHHHHHH-HHHHHHH
Confidence            54    111100   1  12368999999999 9999999

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=96.53  E-value=0.072  Score=46.80  Aligned_cols=119  Identities=13%  Similarity=-0.024  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhh--HHHHHHHHHHHHHHH-HHHHHHhhhchH
Q 043912           23 TFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRR-QRLQVS--WYWYLLLGFVDLQGN-FLANKAYQFTSI   98 (255)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~--~~~~l~~g~~~~~~~-~~~~~al~~Ts~   98 (255)
                      .+|..-.+.++-... .++...-...-...++++.+|+-.-+. ..+...  ....+..+++..... .+...+++..+.
T Consensus       158 ~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~  236 (292)
T COG5006         158 ACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPA  236 (292)
T ss_pred             HHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCCh
Confidence            455666666533321 222234445566677777777643222 222211  223345667777664 468999999999


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+.+.++.|.+..+.++++++|++|..||+|+.+.+++..-.
T Consensus       237 ~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         237 RTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999888776543

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.39  E-value=0.014  Score=43.35  Aligned_cols=50  Identities=16%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             HHHHHHHHhhhchHHHH-HHHhhhHHHHHHHHHHHHccccCchhhHHHHHH
Q 043912           85 GNFLANKAYQFTSITSV-TLLDGCTIAWALILTRLLLGTRYSPLKLFGAGI  134 (255)
Q Consensus        85 ~~~~~~~al~~Ts~~~a-~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l  134 (255)
                      ..++...+++..+.+.+ .+..+...+.+.+.+.+++||++|..|+.|+.+
T Consensus        42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            34567889999888876 677788999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.39  E-value=0.23  Score=39.73  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh----hh-hhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q 043912           23 TFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ----RL-QVSWYWYLLLGFVDLQGNFLANKAYQFTS   97 (255)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~----~~-~~~~~~~l~~g~~~~~~~~~~~~al~~Ts   97 (255)
                      ++..-+...+++.+. ...|..-+...+....+++..+....++    .. +.+|| ...-|+++.....+.........
T Consensus        12 ~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG~~~V~~~~~~vp~lG   89 (138)
T PF04657_consen   12 LIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLGVFFVLSNIILVPRLG   89 (138)
T ss_pred             HHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHHHHHHHHHHHHhhhhh
Confidence            344444555555543 4458888888888776665444333222    12 23444 44466776665555666677776


Q ss_pred             HHHHH-HHhhhHHHHHHHHHHH----HccccCchhhHHHHHHHHHHHHH
Q 043912           98 ITSVT-LLDGCTIAWALILTRL----LLGTRYSPLKLFGAGICMLGLCV  141 (255)
Q Consensus        98 ~~~a~-ll~~~~p~~v~ll~~l----~l~ek~~~~~~~gi~l~~~Gv~l  141 (255)
                      ++++. +...-+-+..+++..+    .-|+|++++|.+|+.+.++|+.+
T Consensus        90 ~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   90 AALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            66643 4444456667888886    57799999999999999999863

>TIGR00803 nst UDP-galactose transporter

Probab=95.49  E-value=0.17  Score=43.16  Aligned_cols=85  Identities=15%  Similarity=0.088  Sum_probs=57.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc-c---------------chhhh-------chhh
Q 043912           99 TSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM-F---------------FFQVF-------QDLY  155 (255)
Q Consensus        99 ~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~-~---------------~~~~~-------~~~~  155 (255)
                      .......+..++++++.+....+||++..|+++.++...|+..-.-+ .               ..+..       .+..
T Consensus         5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~~   84 (222)
T TIGR00803         5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNPV   84 (222)
T ss_pred             cchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccHH
Confidence            34456677889999999999999999999999999999998753110 0               00010       1124


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 043912          156 WAIYLSLLGPCSMLSFSLQNLEYFVKKND  184 (255)
Q Consensus       156 ~Gdll~l~sa~~~~A~~~v~~k~~~~~~~  184 (255)
                      .|..+.+.+. .+-+.-.++.|+..|+.+
T Consensus        85 ~g~~~~l~a~-~~~~~~~~y~e~~~k~~~  112 (222)
T TIGR00803        85 VGLSAVLSAL-LSSGFAGVYFEKILKDGD  112 (222)
T ss_pred             HHHHHHHHHH-HHHhhhHHHHHHcccCCC
Confidence            4544455555 777778888888766544

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00803 nst UDP-galactose transporter

Probab=95.47  E-value=0.2  Score=42.79  Aligned_cols=63  Identities=14%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHH
Q 043912           78 LGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLC  140 (255)
Q Consensus        78 ~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~  140 (255)
                      ..+....+..+...-+++.+...-++...+.++.+.+++.++++|+++..++.|..+.+.|+.
T Consensus       158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence            334444445566777899999999999999999999999999999999999999999998864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=95.38  E-value=1.4  Score=39.41  Aligned_cols=71  Identities=18%  Similarity=0.300  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           72 WYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        72 ~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      +..+...|.....--.++..|-+..+.+..+++.+..|....+++.++++|+++..|..+-++--+|+++.
T Consensus       211 ~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~  281 (293)
T COG2962         211 WLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALF  281 (293)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            44455556555544456788899999999999999999999999999999999999999999999999887

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=95.32  E-value=0.39  Score=41.60  Aligned_cols=159  Identities=15%  Similarity=0.061  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhhc----
Q 043912           77 LLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVFQ----  152 (255)
Q Consensus        77 ~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~~----  152 (255)
                      .++++-..--+..-.+++|-++.--++.-.++++.++....+++|.|.+.......++.+.--+.-.  .++++..    
T Consensus        73 piSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~--w~D~q~~~~~~  150 (309)
T COG5070          73 PISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVAT--WGDQQASAFKA  150 (309)
T ss_pred             CHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhc--cchhhHHHHHh
Confidence            3444444444445577899999988999999999999999999999999999888776665544431  1111110    


Q ss_pred             -hhhHHHHHHHHhHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cchHHH-HHHHH
Q 043912          153 -DLYWAIYLSLLGPCSMLSFSLQNLEYFVKK--NDRVEVVCMIGVYGLLVSSIQLSMLELKSLELV--KWSTDI-ILGFV  226 (255)
Q Consensus       153 -~~~~Gdll~l~sa~~~~A~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~-~~~~~  226 (255)
                       ..+.|-+++.... +.-|.+....|+.++-  ....+-+...-+.+.++......++|..+....  +..... ...++
T Consensus       151 ~~lN~GY~Wm~~Nc-lssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~I  229 (309)
T COG5070         151 QILNPGYLWMFTNC-LSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFI  229 (309)
T ss_pred             cccCCceEEEehhh-HhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHH
Confidence             1267888898888 9999999998887653  224444554555566666555667776544433  222222 23334


Q ss_pred             HHHHHHHHHHHH
Q 043912          227 GYAVSCFMFYTL  238 (255)
Q Consensus       227 ~~~~s~~~~~~~  238 (255)
                      .=.++.++.|+.
T Consensus       230 Sgl~svgiSy~s  241 (309)
T COG5070         230 SGLCSVGISYCS  241 (309)
T ss_pred             HHHHHhhhhhcc
Confidence            445566665553

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.32  E-value=0.042  Score=42.50  Aligned_cols=69  Identities=13%  Similarity=0.229  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-hhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           74 WYLLLGFVDLQGNFLANKAYQFTSITSVTLL-DGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        74 ~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll-~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++...=.++..++..++..+..++.+.+.=+ ++++-+++.+.++++.+|..+++.++|+.+..+|+.+.
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            3444445566777788888999988886644 68888899999998888888999999999999998764

Many members are annotated as potential transmembrane proteins.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=95.07  E-value=0.65  Score=42.66  Aligned_cols=133  Identities=13%  Similarity=0.102  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-HHHHhhh---hhhhH---HHHHHHHHH
Q 043912            9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGI-LLYRRQR---LQVSW---YWYLLLGFV   81 (255)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~-~~~~~~~---~~~~~---~~~l~~g~~   81 (255)
                      +.++|=++....+++-..+|..--++.++ .+.+-.....- +...++..+. ....++.   .+-++   ..++.-+++
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~G-lfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLG-LFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHH-HHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            44566667777777777777776666653 22222221111 1111211111 1112221   11111   122222233


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912           82 DLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS  143 (255)
Q Consensus        82 ~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~  143 (255)
                      .+..+.+.-..++.++++-..+=..++.++.++.+.++.|+++++..++|.++.+.|+++..
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~  304 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN  304 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence            33334455677888888754333356789999999999999999999999999999998873

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=94.98  E-value=0.013  Score=51.90  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH-----HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q 043912           23 TFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILL-----YRRQRLQVSWYWYLLLGFVDLQGNFLANKAYQFTS   97 (255)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~-----~~~~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts   97 (255)
                      .-+..-.+.++.++.   ....++..+|...+++...+..     .+.+..+++|+.+..+|.+++.++.+...|+|--.
T Consensus       202 f~asvyIilR~iGk~---~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiEr  278 (346)
T KOG4510|consen  202 FGASVYIILRYIGKN---AHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIER  278 (346)
T ss_pred             hhhhHHHHHHHhhcc---ccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHHhhhhc
Confidence            334444445566542   1233444455544444322211     12234567888888899999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           98 ITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        98 ~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++..++..++..++..+...++++|-+|.+.|.|.++.+.-.+..
T Consensus       279 AGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  279 AGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             cCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            999999999999999999999999999999999987766555444

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=0.051  Score=48.29  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             HHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcccchhhh--ch--hhHHHHHHHHhHH
Q 043912           91 KAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMFFFQVF--QD--LYWAIYLSLLGPC  166 (255)
Q Consensus        91 ~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~~~~~~--~~--~~~Gdll~l~sa~  166 (255)
                      +.++|.+++=-.+=.+++.+|+.+++++++|+|-+..-..+-++.+.|-.+     |.|..  .+  ...|.++.+.|+ 
T Consensus       121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-----GvdqE~~~~~ls~~GvifGVlaS-  194 (347)
T KOG1442|consen  121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-----GVDQEGSTGTLSWIGVIFGVLAS-  194 (347)
T ss_pred             eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-----ccccccccCccchhhhHHHHHHH-
Confidence            335555544322334567788999999999999988766655544444332     22222  12  268999999999 


Q ss_pred             HHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHH
Q 043912          167 SMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSI  202 (255)
Q Consensus       167 ~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~  202 (255)
                      ++-|+..+..||.....+  -..+.......+.+...|
T Consensus       195 l~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflp  232 (347)
T KOG1442|consen  195 LAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLP  232 (347)
T ss_pred             HHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHH
Confidence            999999999997655433  234555666666665543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=94.60  E-value=0.094  Score=39.51  Aligned_cols=43  Identities=14%  Similarity=-0.035  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043912          167 SMLSFSLQNLEYFVKKNDRVEVVCMIGVYGLLVSSIQLSMLELK  210 (255)
Q Consensus       167 ~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  210 (255)
                      ++||.+.+..|+..++.|+.+.+.+....+.+ ..+.....+..
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   43 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRK   43 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccc
Confidence            46899999999999999999999988888876 54445555543

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=94.59  E-value=0.14  Score=46.56  Aligned_cols=67  Identities=19%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           76 LLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        76 l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      +..+.+....|...+..+..||+-+-++...+=-..+...++++++||.|..+..|.+++++|+.+=
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y  305 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY  305 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence            3444555556777888899999999888877766677888999999999999999999999999876

>TIGR00688 rarD rarD protein

Probab=94.17  E-value=1.2  Score=38.70  Aligned_cols=50  Identities=14%  Similarity=0.123  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHH
Q 043912           70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLL  119 (255)
Q Consensus        70 ~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~  119 (255)
                      ++|...+..|++...++.+++.++++.+++.++...++.|++..+++.+.
T Consensus       206 ~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       206 PIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            35666667777766678899999999999999999999999999988764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=94.11  E-value=0.46  Score=44.01  Aligned_cols=134  Identities=20%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--CCChhHHHHH---HHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHH
Q 043912            9 RTLHLLSIGQLASLTFAATNFTSSFIAN-L--GVDAPVTQSA---FSYFTLALVYGGILLYRRQRL----QVSWYWYLLL   78 (255)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~P~~~~~---~~~~~~~~~ll~~~~~~~~~~----~~~~~~~l~~   78 (255)
                      |.+.|-+++|..|+.-..=.+..++... +  ..+.|.+..+   ++.++.+..+.++....+++.    +.+.-..++.
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            4567788888888888887888875554 3  3455544333   222222222222222222221    2223344566


Q ss_pred             HHHHHHH-HHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           79 GFVDLQG-NFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        79 g~~~~~~-~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ++++... -++|..|.-.|++..+++=.+.+++..++...++-+++++...++|....++|.+++
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~v  388 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIV  388 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhe
Confidence            6666654 689999999999999998889999999999999999999999999999999999988

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.93  E-value=0.11  Score=45.31  Aligned_cols=72  Identities=13%  Similarity=0.210  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHH
Q 043912           70 VSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCV  141 (255)
Q Consensus        70 ~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~l  141 (255)
                      .-++.+.++++.+..++++.+.-..+-++-.-++++.+--+|+.+.+.++++.+++.+||+|..+.+.|+..
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            346778888999998988887777777777778888889999999999999999999999999999988764

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=93.81  E-value=0.018  Score=51.07  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=80.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhh-chHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhccc-
Q 043912           69 QVSWYWYLLLGFVDLQGNFLANKAYQF-TSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSMF-  146 (255)
Q Consensus        69 ~~~~~~~l~~g~~~~~~~~~~~~al~~-Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~~-  146 (255)
                      |.+.+.+...-.+.+..|.+-+.++++ .+..--.++.+-.++-.|+++++.+|+|++.+|+.++++..+|+++..-.. 
T Consensus        61 kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~  140 (330)
T KOG1583|consen   61 KIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSS  140 (330)
T ss_pred             CCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecC
Confidence            333444444444444455566666766 444444566777888899999999999999999999999999998865211 


Q ss_pred             --chh------hhc---hh---hHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHH
Q 043912          147 --FFQ------VFQ---DL---YWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVC  190 (255)
Q Consensus       147 --~~~------~~~---~~---~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~  190 (255)
                        +.+      .++   |.   ..|..+...+. +.-|.-.+++|..-++++  +-|.+.
T Consensus       141 ~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al-~~sa~mgiyqE~~Y~kyGKh~~EalF  199 (330)
T KOG1583|consen  141 KDGRSKLSGLDSGSAQSDFFWWLIGIALLVFAL-LLSAYMGIYQETTYQKYGKHWKEALF  199 (330)
T ss_pred             cchhhhhcccccCcccccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCChHHHHH
Confidence              111      111   11   56887777777 777777788887666553  455443

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=92.52  E-value=7.5  Score=35.76  Aligned_cols=163  Identities=12%  Similarity=0.221  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHHHHHHHH----------hhhhhhhHHHHHH
Q 043912            9 RTLHLLSIGQLASLTFAATNFTSSFIANLGVDAPVT-QSAFSYFTLALVYGGILLYR----------RQRLQVSWYWYLL   77 (255)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~~~~~~~~ll~~~~~~----------~~~~~~~~~~~l~   77 (255)
                      .+..++.+.-+-+++-.+......+..+..+|.-+. +..+.     -+..|+..-.          ++.......+..+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~s-----wli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l   78 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFS-----WLIVPWLWALLAIPDFFSIYSATPASTLFWTFL   78 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHH-----HHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHH
Confidence            345566666666655555555555555444443321 22222     2233333110          0111233455566


Q ss_pred             HHHHHHHHHHHHHHHhhhchHHH-HHHHhhhHHHHHHHHHHHHcc-------ccCchhhHHHHHHHHHHHHHhhcc--cc
Q 043912           78 LGFVDLQGNFLANKAYQFTSITS-VTLLDGCTIAWALILTRLLLG-------TRYSPLKLFGAGICMLGLCVCSSM--FF  147 (255)
Q Consensus        78 ~g~~~~~~~~~~~~al~~Ts~~~-a~ll~~~~p~~v~ll~~l~l~-------ek~~~~~~~gi~l~~~Gv~li~~~--~~  147 (255)
                      .|++...+...+=.+.+|..++- .++...++..+=.++-.++.+       ++-....++|++++++|+.++...  ..
T Consensus        79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K  158 (344)
T PF06379_consen   79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK  158 (344)
T ss_pred             HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence            77777777666667777766654 334444444444444344332       333557899999999999998421  00


Q ss_pred             h-h---hhch--hhHHHHHHHHhHHHHHHHHHHHHH
Q 043912          148 F-Q---VFQD--LYWAIYLSLLGPCSMLSFSLQNLE  177 (255)
Q Consensus       148 ~-~---~~~~--~~~Gdll~l~sa~~~~A~~~v~~k  177 (255)
                      . +   ..+|  .-.|.+.++.|+ ++=|..+.-.+
T Consensus       159 e~~~~~~~~efn~~kGl~iAv~sG-v~Sa~fn~g~~  193 (344)
T PF06379_consen  159 EKELGEEAKEFNFKKGLIIAVLSG-VMSACFNFGLD  193 (344)
T ss_pred             hhhhccchhhhhhhhhHHHHHHHH-HHHHHHHHHHH
Confidence            0 0   0111  257999999988 88777776544

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.71  E-value=6.2  Score=32.04  Aligned_cols=127  Identities=13%  Similarity=0.161  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHhh--h----hhhhHHHHHHHHHHHHHHHH
Q 043912           14 LSIGQLASLTFAATNFTSSFIANLGVDAPVTQSAFSYFTLALVYGGILLYRRQ--R----LQVSWYWYLLLGFVDLQGNF   87 (255)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ll~~~~~~~~--~----~~~~~~~~l~~g~~~~~~~~   87 (255)
                      ++.+-..-.+...-+.+-+.+.+. .+.|..-+...+..-..++..+.+.+++  .    -+.+|| ...-|.++..--+
T Consensus         7 ll~~i~aG~~l~~Q~~iN~qL~~~-~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW-~~~GG~lGa~~vt   84 (150)
T COG3238           7 LLFAILAGALLPLQAAINGRLARY-LGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWW-AWIGGLLGAIFVT   84 (150)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchH-HHHccchhhhhhh
Confidence            334444444555566666666653 5678888888988766665444433322  1    122344 3434444432222


Q ss_pred             HHHHHhhh-chHHHHHHHhhhHHHHHHHHHHHHcc----ccCchhhHHHHHHHHHHHHHh
Q 043912           88 LANKAYQF-TSITSVTLLDGCTIAWALILTRLLLG----TRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        88 ~~~~al~~-Ts~~~a~ll~~~~p~~v~ll~~l~l~----ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ........ -.+....++.+-.-+..+++..+=+.    ++++..++.|+++.++|+.++
T Consensus        85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence            22222222 33334556666677777777776444    899999999999999995554

>PRK02237 hypothetical protein; Provisional

Probab=91.15  E-value=5.6  Score=30.43  Aligned_cols=37  Identities=30%  Similarity=0.540  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912          106 GCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus       106 ~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+....+-.+.+-|+|+++..++|..+|++|+.+|
T Consensus        67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI  103 (109)
T PRK02237         67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI  103 (109)
T ss_pred             hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence            3344455667889999999999999999999999988

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.12  E-value=0.22  Score=45.18  Aligned_cols=59  Identities=24%  Similarity=0.432  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912           85 GNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS  143 (255)
Q Consensus        85 ~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~  143 (255)
                      |...-+.|+.+.+++-.+=+-++..+...+++..++|||++..-.+|..+|++|-.++.
T Consensus        77 Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV  135 (335)
T KOG2922|consen   77 GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV  135 (335)
T ss_pred             HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence            34444556778888888888888889999999999999999999999999999999884

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=89.47  E-value=5.5  Score=30.38  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912          106 GCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus       106 ~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ...+....+-.+.+-|+|+++..++|..+|++|+.++
T Consensus        65 GvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI  101 (107)
T PF02694_consen   65 GVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII  101 (107)
T ss_pred             hhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence            3445556677889999999999999999999999998

; GO: 0016020 membrane

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=88.41  E-value=1.2  Score=39.86  Aligned_cols=136  Identities=16%  Similarity=0.172  Sum_probs=88.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhhcc
Q 043912           66 QRLQVSWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCSSM  145 (255)
Q Consensus        66 ~~~~~~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~~~  145 (255)
                      ++...+|+-+..++++......+.+-++.|-+--..-+.-++-.+=|++.+.++-++|+...+..+..+...|+++-.  
T Consensus       100 k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FT--  177 (367)
T KOG1582|consen  100 KRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFT--  177 (367)
T ss_pred             cceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhh--
Confidence            344456777888887766555555556666544444555565555578999999999999999999999999998862  


Q ss_pred             cchhhh-ch--hhHHHHHHHHhHHHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHHHHHHH
Q 043912          146 FFFQVF-QD--LYWAIYLSLLGPCSMLSFSLQNLEYFVKKND--RVEVVCMIGVYGLLVSSIQLS  205 (255)
Q Consensus       146 ~~~~~~-~~--~~~Gdll~l~sa~~~~A~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  205 (255)
                       -+|.. +.  +..|..+.=+|- ++-|+--.++||..+.++  ..+++......|.+....+..
T Consensus       178 -LADs~~sPNF~~~Gv~mIsgAL-l~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mv  240 (367)
T KOG1582|consen  178 -LADSQTSPNFNLIGVMMISGAL-LADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMV  240 (367)
T ss_pred             -hcccccCCCcceeeHHHHHHHH-HHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHH
Confidence             12221 11  257877777777 778876666776666543  455554444455555444433

>COG1742 Uncharacterized conserved protein [Function unknown]

Probab=84.24  E-value=12  Score=28.38  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912          108 TIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus       108 ~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      .+....+-.++.-|.|+++..+.|..+|++|+.+|
T Consensus        68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi  102 (109)
T COG1742          68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI  102 (109)
T ss_pred             HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee
Confidence            34445555678889999999999999999998887

>PRK13499 rhamnose-proton symporter; Provisional

Probab=83.35  E-value=38  Score=31.33  Aligned_cols=66  Identities=12%  Similarity=0.020  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHH----HHHHHhhhHHHHHHHHHHHHccccCc------hhhHHHHHHHHHHHHHh
Q 043912           76 LLLGFVDLQGNFLANKAYQFTSIT----SVTLLDGCTIAWALILTRLLLGTRYS------PLKLFGAGICMLGLCVC  142 (255)
Q Consensus        76 l~~g~~~~~~~~~~~~al~~Ts~~----~a~ll~~~~p~~v~ll~~l~l~ek~~------~~~~~gi~l~~~Gv~li  142 (255)
                      .+.|.+...++.+...|-+...++    +-.+-++++.++..+-+. ++||+=+      +.-+.|+++-+.|..++
T Consensus       264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~li  339 (345)
T PRK13499        264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIV  339 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHH
Confidence            455566666666665655544332    223555777777777777 5999877      44567777777777776

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=82.79  E-value=20  Score=32.62  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           71 SWYWYLLLGFVDLQGNFLANKAYQFTSITSVTLLDGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        71 ~~~~~l~~g~~~~~~~~~~~~al~~Ts~~~a~ll~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      -++..++.+.++..++.+.+.-++.=.+-..+.++.+==++.++++.+..+.+++..||.|+.+.+.|+.+=
T Consensus       240 ~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  240 VAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLE  311 (327)
T ss_pred             HHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHH
Confidence            356778889999888776555555433333344555667788999999999999999999999999998763

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.31
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.21

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.31  E-value=3.9e-06  Score=63.53  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             HHHHHHHH-HHHHHHHHhhhchHHHHHHH-hhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHh
Q 043912           77 LLGFVDLQ-GNFLANKAYQFTSITSVTLL-DGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVC  142 (255)
Q Consensus        77 ~~g~~~~~-~~~~~~~al~~Ts~~~a~ll-~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li  142 (255)
                      ..+..... .++++..++++.+++.+.-+ .++.|+++.+++++++|||+++.|++|+.+.++|++.+
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l  101 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLII  101 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            34444443 45678889999999998666 89999999999999999999999999999999999998

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.21  E-value=2.3e-06  Score=67.43  Aligned_cols=67  Identities=12%  Similarity=0.183  Sum_probs=47.5

Q ss_pred             HHHHHHHH-HHHHHHHHhhhchHHHHHHH-hhhHHHHHHHHHHHHccccCchhhHHHHHHHHHHHHHhh
Q 043912           77 LLGFVDLQ-GNFLANKAYQFTSITSVTLL-DGCTIAWALILTRLLLGTRYSPLKLFGAGICMLGLCVCS  143 (255)
Q Consensus        77 ~~g~~~~~-~~~~~~~al~~Ts~~~a~ll-~~~~p~~v~ll~~l~l~ek~~~~~~~gi~l~~~Gv~li~  143 (255)
                      +++++... .++++..+++..+++.+.-+ .++.|++++++++++++|+++..|++|+++.++|++++.
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            34444444 46678999999999988777 899999999999999999999999999999999999983

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00