Citrus Sinensis ID: 043928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
MGKYELDIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLDA
ccEEEEEEcccEEEEEEEccHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccEEEEEEcccEEEEEEccccccHHHHHHHHccccEEEEEEEcccHHHHHcccccccccEEEEHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
ccEEEEEEcccEEEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccEEEEEEccccEEEEEEEccccccHHHHHHHccccEEEEEEccHHHHHHHHHcccEEccHHcHHHHHHHHHcccHcccccHHHHHHHHHccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccc
mgkyeldiqgnnmkVTVVDHAALIDDNVAALKALLKRQRvvgidvkfnhrctKKAEMLILCAGNRCLIIQLchlgqipeSLKKFLADETICFVGiemngkvdglgrcnlRCKTAVELGHFAARvlkkphissfGLAKLAREVGIhnslasgfngyapswsarafsnEQIKFAVHEAFAYYVIGDRVLSSLDA
mgkyeldiqgnNMKVTVVDHAALIDDNVAALKALLKrqrvvgidvkfnhrcTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLDA
MGKYELDIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLDA
*******IQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVL*****
*GKYELDIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL**
MGKYELDIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLDA
*GKYELDIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLS****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGKYELDIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
225450559208 PREDICTED: Werner Syndrome-like exonucle 0.937 0.865 0.290 1e-16
147818277219 hypothetical protein VITISV_026723 [Viti 0.953 0.835 0.295 2e-16
225450557210 PREDICTED: Werner Syndrome-like exonucle 0.937 0.857 0.306 3e-16
226503994200 LOC100283715 [Zea mays] gi|195636594|gb| 0.932 0.895 0.310 3e-16
414881130200 TPA: 3-5 exonuclease/ nucleic acid bindi 0.932 0.895 0.310 4e-16
242053889239 hypothetical protein SORBIDRAFT_03g03028 0.770 0.619 0.339 8e-16
125571460 357 hypothetical protein OsJ_02895 [Oryza sa 0.765 0.411 0.360 1e-15
55773858 298 hypothetical protein [Oryza sativa Japon 0.765 0.493 0.360 1e-15
125527138 357 hypothetical protein OsI_03140 [Oryza sa 0.765 0.411 0.354 2e-15
351727341208 uncharacterized protein LOC100527339 [Gl 0.927 0.855 0.298 6e-15
>gi|225450559|ref|XP_002277541.1| PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 16/196 (8%)

Query: 2   GKYELDIQGNNMKVTVVDHAALIDDNVAALKALLK-RQRVVGIDVKFNHR----CTKKAE 56
            KY ++  G  ++ T+ D AA++D+ V  + ++   +  VVG+D+++        + K+ 
Sbjct: 15  SKYSVNFAGKTIETTLTDKAAIVDEWVQEILSIYAGKPMVVGLDIEWRPNRIPSMSNKSA 74

Query: 57  MLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGL-GRCNLRCKTAV 115
            L LC  N+CLI+QL ++ +IP+SLK FL D    FVG+E+   +D L     L C  + 
Sbjct: 75  TLQLCINNKCLILQLFYMDEIPQSLKGFLLDSNFTFVGVEVGADIDKLKNEYGLECSCSA 134

Query: 116 ELGHFAAR----VLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKF 171
           ++   A +      ++P     GL  LA EV ++  +    +    +W AR  +  Q+++
Sbjct: 135 DVRILAMQRWPGRFRRP-----GLKDLAWEV-VNLRMKKPKHVCMSNWEARVLNENQVEY 188

Query: 172 AVHEAFAYYVIGDRVL 187
           A  +A+A Y IG +++
Sbjct: 189 ACIDAYASYRIGHKLI 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147818277|emb|CAN64722.1| hypothetical protein VITISV_026723 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450557|ref|XP_002277523.1| PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|226503994|ref|NP_001150086.1| LOC100283715 [Zea mays] gi|195636594|gb|ACG37765.1| 3-5 exonuclease/ nucleic acid binding protein [Zea mays] Back     alignment and taxonomy information
>gi|414881130|tpg|DAA58261.1| TPA: 3-5 exonuclease/ nucleic acid binding protein [Zea mays] Back     alignment and taxonomy information
>gi|242053889|ref|XP_002456090.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor] gi|241928065|gb|EES01210.1| hypothetical protein SORBIDRAFT_03g030280 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|125571460|gb|EAZ12975.1| hypothetical protein OsJ_02895 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|55773858|dbj|BAD72396.1| hypothetical protein [Oryza sativa Japonica Group] gi|55773956|dbj|BAD72483.1| hypothetical protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125527138|gb|EAY75252.1| hypothetical protein OsI_03140 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|351727341|ref|NP_001238437.1| uncharacterized protein LOC100527339 [Glycine max] gi|255632121|gb|ACU16413.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query192
TAIR|locus:2053519239 AT2G36110 [Arabidopsis thalian 0.885 0.711 0.313 2.7e-13
TAIR|locus:2092497185 AT3G12420 [Arabidopsis thalian 0.312 0.324 0.484 4.2e-13
TAIR|locus:2092482230 AT3G12410 [Arabidopsis thalian 0.270 0.226 0.537 4.6e-08
TAIR|locus:2092457242 AT3G12460 [Arabidopsis thalian 0.447 0.355 0.344 4.5e-07
TAIR|locus:2092507238 AT3G12430 [Arabidopsis thalian 0.375 0.302 0.402 2.5e-06
TAIR|locus:2092472220 AT3G12470 [Arabidopsis thalian 0.583 0.509 0.317 4.9e-06
TAIR|locus:2092442353 AT3G12440 [Arabidopsis thalian 0.338 0.184 0.384 7.1e-06
TAIR|locus:2095994171 AT3G62320 [Arabidopsis thalian 0.598 0.672 0.289 9.8e-06
UNIPROTKB|F1NAR0 1367 F1NAR0 "Uncharacterized protei 0.807 0.113 0.261 0.0002
ZFIN|ZDB-GENE-070702-2 1436 wrn "Werner syndrome" [Danio r 0.765 0.102 0.275 0.00049
TAIR|locus:2053519 AT2G36110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 59/188 (31%), Positives = 93/188 (49%)

Query:     6 LDIQGNNMKVTVVDHAALIDDNVAALKALLKRQR-----VVGIDVKFNHRCTKKA-EMLI 59
             +D  G  + VTV    + I   + +++    R R     VVG+DV++    +    ++L 
Sbjct:    19 IDFFGERLIVTVTHTTSTIRRWIHSIR-FFSRLRSSHPLVVGLDVQWTPGGSDPPPDILQ 77

Query:    60 LCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGI---EMNGKVDGLGRCNLRCKTAVE 116
             LC GNRCLIIQL H  +IPE L+ FL DETI FVG+   +  GK++   R  L     ++
Sbjct:    78 LCVGNRCLIIQLSHCKRIPEVLRSFLEDETITFVGVWNSQDQGKLERF-RHQLEIWRLLD 136

Query:   117 LGHFA-ARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHE 175
             + H+   R+L     SSF   K+  E   +  +         +W AR+ S++QI  A  +
Sbjct:   137 IRHYLPTRLLN----SSF--EKIVEECLGYKGVRKDKEICMSNWGARSLSHDQIVQASDD 190

Query:   176 AFAYYVIG 183
              +    +G
Sbjct:   191 VYVCCKLG 198
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0008408 "3'-5' exonuclease activity" evidence=IEA;ISS
TAIR|locus:2092497 AT3G12420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092482 AT3G12410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092457 AT3G12460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092507 AT3G12430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092472 AT3G12470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092442 AT3G12440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095994 AT3G62320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NAR0 F1NAR0 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070702-2 wrn "Werner syndrome" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb03g030280.1
hypothetical protein (239 aa)
(Sorghum bicolor)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 8e-25
smart00474172 smart00474, 35EXOc, 3'-5' exonuclease 9e-08
pfam01612172 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 0.004
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information 
 Score = 94.6 bits (236), Expect = 8e-25
 Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 23/181 (12%)

Query: 18  VDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAE----MLILCAGNRCLIIQLCH 73
            D A   ++   A+K LL +++VVG D ++     K       +L L   +RCL+ QL H
Sbjct: 1   TDSAQDAEE---AVKELLGKEKVVGFDTEWRPSFRKGKRNKVALLQLATESRCLLFQLAH 57

Query: 74  LGQIPESLKKFLADETICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISS 132
           + ++P SLK+ L D +I  VG+ + G    L R   +  +  V+L H A RV   P    
Sbjct: 58  MDKLPPSLKQLLEDPSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRVG--PRRKL 115

Query: 133 FGLAKLAREVGIHNSLASGFNGYAPS------WSARAFSNEQIKFAVHEAFAYYVIGDRV 186
             LA+L  EV        G     P       W AR  S EQI +A  +A+A   +  ++
Sbjct: 116 VSLARLVEEVL-------GLPLSKPKKVRCSNWEARPLSKEQILYAATDAYASLELYRKL 168

Query: 187 L 187
           L
Sbjct: 169 L 169

WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability. Length = 170
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 192
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 100.0
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 100.0
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 100.0
PRK10829 373 ribonuclease D; Provisional 100.0
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 99.97
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.97
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 99.96
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 99.96
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 99.96
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 99.91
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.86
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.86
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 99.75
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 99.74
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 99.71
KOG2206 687 consensus Exosome 3'-5' exoribonuclease complex, s 99.66
PRK05755 880 DNA polymerase I; Provisional 99.52
PRK14975 553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 99.34
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 99.25
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 99.25
TIGR00593 887 pola DNA polymerase I. This family is based on the 98.02
COG0749 593 PolA DNA polymerase I - 3'-5' exonuclease and poly 97.97
PRK06310250 DNA polymerase III subunit epsilon; Validated 97.44
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 97.36
cd05780195 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom 97.31
PRK07740244 hypothetical protein; Provisional 97.23
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 97.23
PRK08517257 DNA polymerase III subunit epsilon; Provisional 97.17
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 97.15
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 97.15
PRK07883 557 hypothetical protein; Validated 97.12
cd05160199 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain 96.92
PRK07942232 DNA polymerase III subunit epsilon; Provisional 96.92
PRK05711240 DNA polymerase III subunit epsilon; Provisional 96.91
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 96.85
PRK09145202 DNA polymerase III subunit epsilon; Validated 96.85
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 96.8
PRK06807 313 DNA polymerase III subunit epsilon; Validated 96.79
PRK06309232 DNA polymerase III subunit epsilon; Validated 96.79
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 96.78
PRK07748207 sporulation inhibitor KapD; Provisional 96.76
PRK06063 313 DNA polymerase III subunit epsilon; Provisional 96.67
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 96.63
PRK05168211 ribonuclease T; Provisional 96.59
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 96.49
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 96.4
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 96.39
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 96.19
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 96.12
cd05781188 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of 95.94
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 95.92
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 95.91
PRK09146239 DNA polymerase III subunit epsilon; Validated 95.9
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 95.87
KOG2249280 consensus 3'-5' exonuclease [Replication, recombin 95.86
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 95.75
cd05782208 DNA_polB_like1_exo Uncharacterized bacterial subgr 95.38
cd05777230 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain 95.17
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 95.12
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 95.08
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 94.8
cd05784193 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of 94.33
PRK07247195 DNA polymerase III subunit epsilon; Validated 94.31
cd05785207 DNA_polB_like2_exo Uncharacterized bacterial subgr 93.87
KOG3657 1075 consensus Mitochondrial DNA polymerase gamma, cata 93.61
cd05779204 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai 93.37
PRK07983219 exodeoxyribonuclease X; Provisional 93.11
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 92.93
KOG2248380 consensus 3'-5' exonuclease [Replication, recombin 92.59
PRK05601 377 DNA polymerase III subunit epsilon; Validated 92.52
PRK06195 309 DNA polymerase III subunit epsilon; Validated 92.47
cd05783204 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of 91.89
PRK09182294 DNA polymerase III subunit epsilon; Validated 91.3
PRK00448 1437 polC DNA polymerase III PolC; Validated 90.95
PRK11779 476 sbcB exonuclease I; Provisional 90.74
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 90.21
PHA02528 881 43 DNA polymerase; Provisional 88.74
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 87.08
PRK06722281 exonuclease; Provisional 85.93
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information 
Probab=100.00  E-value=6.7e-41  Score=268.15  Aligned_cols=168  Identities=24%  Similarity=0.410  Sum_probs=146.1

Q ss_pred             EEEeCChHHHHHHHHHHHHhhcCCcEEEEeeeecCC----CCCceeEEEeeeCCeEEEEeccccC-----CccHHHHHhh
Q 043928           15 VTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHR----CTKKAEMLILCAGNRCLIIQLCHLG-----QIPESLKKFL   85 (192)
Q Consensus        15 v~vt~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~~----~~~~~aliQl~~~~~~~l~~l~~~~-----~~p~~L~~~l   85 (192)
                      +.++++++++++++.++.  ..+..+||||+||.|.    ..+++||||||+++.|+|||+..++     .+|+.|+++|
T Consensus         1 ~~~i~~~~el~~~~~~~~--l~~~~vig~D~Ew~~~~~~~~~~~v~LiQiat~~~~~lid~~~~~~~~~~~~~~~L~~ll   78 (193)
T cd06146           1 IHIVDSEEELEALLLALS--LEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDEVFLLDLLALENLESEDWDRLLKRLF   78 (193)
T ss_pred             CeEecCHHHHHHHHHHHh--hccCCEEEEECccCCCccCCCCCCceEEEEecCCCEEEEEchhccccchHHHHHHHHHHh
Confidence            368899999999999841  1257899999999987    2689999999999999999998764     4788999999


Q ss_pred             cCCCeeEEEEeehhhHHHhhc-CCC------ccCcEeehHHHHHHHhCCC--------CcCcccHHHHHHHh-CcccCCC
Q 043928           86 ADETICFVGIEMNGKVDGLGR-CNL------RCKTAVELGHFAARVLKKP--------HISSFGLAKLAREV-GIHNSLA  149 (192)
Q Consensus        86 ~~~~i~kvG~~~~~D~~~L~~-~g~------~~~~~~Dl~~~a~~~~~~~--------~~~~~gL~~l~~~~-g~~l~~~  149 (192)
                      +||+|+||||++++|+++|++ ||+      .++|++|++.+++...+..        .....||++||+.+ |.+++  
T Consensus        79 ~d~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~--  156 (193)
T cd06146          79 EDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLD--  156 (193)
T ss_pred             CCCCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHHHHhCCCcC--
Confidence            999999999999999999999 887      4789999999887543211        02468999999999 99999  


Q ss_pred             CCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 043928          150 SGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLS  188 (192)
Q Consensus       150 K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~  188 (192)
                        |+.|+|||++||||++|+.|||.|||+++.||++|.+
T Consensus       157 --K~~q~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~~  193 (193)
T cd06146         157 --KSEQCSNWERRPLREEQILYAALDAYCLLEVFDKLLE  193 (193)
T ss_pred             --cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence              4679999999999999999999999999999999864

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases Back     alignment and domain information
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair] Back     alignment and domain information
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PHA02528 43 DNA polymerase; Provisional Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query192
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 2e-24
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 6e-19
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure
 Score = 93.9 bits (233), Expect = 2e-24
 Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 29/199 (14%)

Query: 10  GNNMKVTVVDHAALIDDNVA----ALKALLKRQRVVGIDV--KFNHRCTKKAEMLI---- 59
           G+ ++   +D  +  D +         ++L   R V  DV        T+          
Sbjct: 14  GSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSL 73

Query: 60  ----LCAGNRCLIIQLCH-LGQIPESLKKFLADETICFVGIEMNGKVDGLGR-CNLRCKT 113
               L   N CL ++L        + L +F A + + FVG+++   +D L     L  + 
Sbjct: 74  SSVKLSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRN 133

Query: 114 AVELGHFAARVLKKPHISSFGLAKLAREV-----GIHNSLASGFNGYAPSWSARAFSNEQ 168
           A+ +G  AA       +   G  +LA  V     G  +S+ +        W  +A   EQ
Sbjct: 134 AINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEA-------KWE-KAGPEEQ 185

Query: 169 IKFAVHEAFAYYVIGDRVL 187
           ++ A  E +    + D++ 
Sbjct: 186 LEAAAIEGWLIVNVWDQLS 204
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 100.0
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 100.0
3saf_A 428 Exosome component 10; exoribonuclease, RNA exosome 99.96
2hbj_A 410 Exosome complex exonuclease RRP6; RNA metabolism, 99.95
1yt3_A 375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 99.94
3cym_A 440 Uncharacterized protein BAD_0989; structural genom 99.89
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 99.66
3pv8_A 592 DNA polymerase I; DNA polymerase I, protein-DNA co 99.4
1x9m_A 698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 99.24
4dfk_A 540 DNA polymerase I, thermostable; DNA polymerase, tr 98.47
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 98.02
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 97.81
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 97.44
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 97.37
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 97.3
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 97.1
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 96.96
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 96.59
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 96.45
1bgx_T 832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 96.29
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 95.81
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 94.99
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 94.81
4gmj_B285 CCR4-NOT transcription complex subunit 7; mRNA dec 94.11
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 93.88
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 93.15
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 90.67
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 89.62
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 87.4
3qex_A 903 DNA polymerase, GP43; difluorotoluene nucleoside; 84.09
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 83.49
3ikm_A 1172 DNA polymerase subunit gamma-1; human mitochondria 82.92
2py5_A 575 DNA polymerase; protein-DNA complex, replication, 82.39
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
Probab=100.00  E-value=1.3e-42  Score=279.51  Aligned_cols=175  Identities=21%  Similarity=0.308  Sum_probs=146.1

Q ss_pred             EcCcEEEEE--EeCChHHHHHHHHHHHHhh--cCCcEEEEeeeecCCC--------C--CceeEEEeeeCCeEEEEeccc
Q 043928            8 IQGNNMKVT--VVDHAALIDDNVAALKALL--KRQRVVGIDVKFNHRC--------T--KKAEMLILCAGNRCLIIQLCH   73 (192)
Q Consensus         8 ~~g~~i~v~--vt~~~~~~~~~i~~~~~~~--~~~~vvG~D~Ew~~~~--------~--~~~aliQl~~~~~~~l~~l~~   73 (192)
                      .+|+.+.+.  .+.+.+++..++..+.+..  ....+||||+||.|..        .  +++||||||+++.|+|||+  
T Consensus        12 ~~g~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l--   89 (206)
T 1vk0_A           12 TDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRL--   89 (206)
T ss_dssp             TTSCEEEEEEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEEC--
T ss_pred             cCCccceeeEEEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEec--
Confidence            556654332  3444444555565554322  3457999999999741        2  5899999999999999999  


Q ss_pred             cCCccHH---HHHhhcCCCeeEEEEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCC
Q 043928           74 LGQIPES---LKKFLADETICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSL  148 (192)
Q Consensus        74 ~~~~p~~---L~~~l~~~~i~kvG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~  148 (192)
                      ++.+|+.   |.+||+||+|+||||++++|+++|++ ||+.+++++|++.+|+..+|.+...+.||+.|++++ |.++  
T Consensus        90 ~~~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l--  167 (206)
T 1vk0_A           90 PKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL--  167 (206)
T ss_dssp             CSSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC--
T ss_pred             cccCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC--
Confidence            3667877   78999999999999999999999999 999999999999998878887655689999999999 9998  


Q ss_pred             CCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 043928          149 ASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLS  188 (192)
Q Consensus       149 ~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~  188 (192)
                       |+|++|+|||++ |||++|+.|||.|||++++||++|.+
T Consensus       168 -K~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~  205 (206)
T 1vk0_A          168 -GQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD  205 (206)
T ss_dssp             -HHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence             347899999999 99999999999999999999999975
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens} Back     alignment and structure
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 192
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 1e-17
d2hbka2292 c.55.3.5 (A:129-420) Exosome complex exonuclease R 6e-06
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.0 bits (184), Expect = 1e-17
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 14  KVTVVDHAALIDDNVAALK--ALLKRQRVVGIDVKFNHRCTK----------KAEMLILC 61
           K   V  +  I   ++ ++  ++L   R V  DV ++    +              + L 
Sbjct: 20  KTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLS 79

Query: 62  AGNRCLIIQLCHLGQ-IPESLKKFLADETICFVGIEMNGKVDGLGRC-NLRCKTAVELGH 119
             N CL ++L        + L +F A + + FVG+++   +D L     L  + A+ +G 
Sbjct: 80  TRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGK 139

Query: 120 FAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAY 179
            AA       +   G  +LA  V    S     +     W  +A   EQ++ A  E +  
Sbjct: 140 LAAEARGTLVLEFLGTRELAHRV--LWSDLGQLDSIEAKWE-KAGPEEQLEAAAIEGWLI 196

Query: 180 YVIGDR 185
             + D+
Sbjct: 197 VNVWDQ 202
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query192
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 100.0
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 100.0
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 100.0
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.84
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 99.62
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 97.59
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 97.05
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 96.65
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 95.88
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 95.81
d2guia1174 N-terminal exonuclease domain of the epsilon subun 95.45
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 95.18
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 93.2
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 92.8
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 88.69
d2qxfa1 467 Exonuclease I {Escherichia coli K12 (Escherichia c 88.37
d1uoca_286 Pop2 RNase D domain {Baker's yeast (Saccharomyces 85.81
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 84.48
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-42  Score=277.87  Aligned_cols=184  Identities=20%  Similarity=0.246  Sum_probs=160.3

Q ss_pred             cceEEEEcCcEEEEEE--eCChHHHHHHHHHHHHhh--cCCcEEEEeeeecCC----------CCCceeEEEeeeCCeEE
Q 043928            2 GKYELDIQGNNMKVTV--VDHAALIDDNVAALKALL--KRQRVVGIDVKFNHR----------CTKKAEMLILCAGNRCL   67 (192)
Q Consensus         2 ~~y~v~~~g~~i~v~v--t~~~~~~~~~i~~~~~~~--~~~~vvG~D~Ew~~~----------~~~~~aliQl~~~~~~~   67 (192)
                      |+...+++|..+.+.+  +++.+.+..|+..++...  ...++||||+||.|.          ...++|+||||+++.|+
T Consensus         6 g~~~~~~d~~~~~t~~i~~~~~~~~~~~~~~i~~~~~~~~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t~~~~~   85 (206)
T d1vk0a_           6 GPKFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCL   85 (206)
T ss_dssp             SCEEECTTSCEEEEEEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEE
T ss_pred             CccccccCcchhceeeEecCCHHHHHHHHHHHHHHHhhcCCCEEEEEeecCCCCCcccccccccCceeEEEEEEeCCCEE
Confidence            4566788899887655  667788889999888643  445899999999886          13479999999999999


Q ss_pred             EEeccccC-CccHHHHHhhcCCCeeEEEEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-Cc
Q 043928           68 IIQLCHLG-QIPESLKKFLADETICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GI  144 (192)
Q Consensus        68 l~~l~~~~-~~p~~L~~~l~~~~i~kvG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~  144 (192)
                      |||+.+.. ..|+.|++||+||+|+||||++++|+++|++ ||+.++|++|++.+|...++.+...+.||+.|++++ |.
T Consensus        86 l~~l~~~~~~~~~~L~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~  165 (206)
T d1vk0a_          86 FLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWS  165 (206)
T ss_dssp             EEECCSSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCC
T ss_pred             EEECCccccccHHHHHHHhcCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcc
Confidence            99998764 4688999999999999999999999999999 999999999999999887777765678999999999 99


Q ss_pred             ccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928          145 HNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS  189 (192)
Q Consensus       145 ~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~  189 (192)
                      +++  |++ .++|||+ +|||++||+|||.|||++++||++|.++
T Consensus       166 ~l~--K~~-~~~SnW~-~pLs~~Qi~YAA~DA~~~~~i~~~L~~e  206 (206)
T d1vk0a_         166 DLG--QLD-SIEAKWE-KAGPEEQLEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             CCH--HHH-HHHHTGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCC--Ccc-eeecCCC-CcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999  754 5679997 6999999999999999999999999763
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure