Citrus Sinensis ID: 043963

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQVLFQQPQPLASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGFLRKREKL
Secondary Structure (PSIPRED)
ccccccEEEcccccccHHHHHHHHHcHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHcccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccEcccccccccccccccccccHcccccccccccccccccccccccccHcccccccHHHHHHHcc
Coil and Loop (DISEMBL)
MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATlcgvptcmiiygprlnshpgsvdvevwpkdHKEFMQVVNLYRDkaftsvhgvksqnlydFFADRNRKVYEKIVKIRKAnfeskfssdldedfnnfSMHQLKGMLVVLDNNIDVATRKLALIKGhhqnfgcyndnnnannSAQVlfqqpqplashhvnmqlasyhhhepiqmvsfdfnpvdnpTMMMMLMnggdqiqlgcnttalynhhhpmqhavycdpvgamiENRVMMNNPRAAMRFVGSTMQQFqpfieqfpalpspqfngfygdngflrkrekl
Flexible Loop (DISEMBL)
mgrgkltlklidkekarMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFtsvhgvksqnlydffadrNRKVYEKIVKIRkanfeskfssdlDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQVLFQQPQPLASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGFLRKREKL
Low Complexity Region (SEG)
MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYndnnnannSAQVLFQQPQPLASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGFLRKREKL
Disordered region (IsUnstruct)
*****************MITYQ****GLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQVLFQ****LASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGF*******
Disordered Region (DISOPRED)
MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKA******************************RKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLA******************************************************************************************************************************************PSPQFNGFYGDNGFLR*****
Disordered Region (DISEMBL)
MGRGKLTLKLIDKEKARMITYQ*********AQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQVLFQQPQPLASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGFLRKREKL
Disordered Region (DISPRO)
**RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCY**********QVLFQQPQPLASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGFLRK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKLTLKLxxxxxxxxxxxxxxxxxxxxxAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQVLFQQPQPLASHHVNMQLASYHHHEPIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFIEQFPALPSPQFNGFYGDNGFLRKREKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q7XJK8	278	MADS-box transcription fa	no	no	0.720	0.816	0.243	3e-10
Q38840	227	Agamous-like MADS-box pro	no	no	0.155	0.215	0.469	3e-08
Q9C6V3	339	Agamous-like MADS-box pro	no	no	0.349	0.324	0.285	1e-07
O80805	279	MADS-box transcription fa	no	no	0.333	0.376	0.304	4e-07
Q9SZJ6	228	Agamous-like MADS-box pro	no	no	0.158	0.219	0.44	6e-07
Q9C6V4	464	Agamous-like MADS-box pro	no	no	0.330	0.224	0.296	7e-07
A2RVQ5	240	Agamous-like MADS-box pro	no	no	0.158	0.208	0.44	2e-06
Q10PZ9	257	MADS-box transcription fa	yes	no	0.431	0.529	0.277	2e-06
A2XDY1	257	MADS-box transcription fa	N/A	no	0.431	0.529	0.277	2e-06
Q07474	212	Floral homeotic protein P	N/A	no	0.155	0.231	0.448	2e-06

>sp|Q7XJK8|PHE2_ARATH MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 113/271 (41%), Gaps = 44/271 (16%)

Query: 3   RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVE 62
           + K+ L LI+   +R  T+ KRK+G+ KK  E  TLCGV  C ++Y P  NS P     E
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSP-FNSIP-----E 55

Query: 63  VWPKDH------KEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKAN 116
            WP          +FM++  L R K               F + R  K  E++ K+R  N
Sbjct: 56  AWPSREGVEDVVSKFMELSVLDRTKKMVDQET--------FISQRIAKEKEQLQKLRDEN 107

Query: 117 FESKFSSDL------DEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYND 170
             S+    +      + +  N     L+ + + +D  ++  TR++ ++  + ++      
Sbjct: 108 HNSQIRELMFGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPL 167

Query: 171 NNNANNSAQVLFQQPQPLASHHVNMQ---------LASYHHHEPIQMVSFDFNPVDNPTM 221
              AN +A V F  P     H+ N Q         L  ++   P ++  F+ N   +   
Sbjct: 168 PIVANAAAPVGFDGPM-FQYHNQNQQKPVQFQYQALYDFYDQIPKKIHGFNMNMNKDSNQ 226

Query: 222 MMML-----MNGGDQIQLGCNTTALYNHHHP 247
            M+L     +N G+   + C      N++HP
Sbjct: 227 SMVLDLNQNLNDGEDEGIPCMDN---NNYHP 254

Probable transcription factor involved in the development of gametophytes and seeds.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38840|AGL17_ARATH Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 34/49 (69%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYG 49
          MGRGK+ ++ ID   +R +T+ KR++GL KKA+E A LC    C+II+ 
Sbjct: 1  MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFS 49

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V3|AGL86_ARATH Agamous-like MADS-box protein AGL86 OS=Arabidopsis thaliana GN=AGL86 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 3   RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVE 62
           R K+ L LI  + +R  T++KRK G+  K  E  TLCGV  C +I  P  N         
Sbjct: 2   RSKIKLSLIANKTSRRTTFRKRKGGITNKLHELTTLCGVKACAVISSPYENP-------V 54

Query: 63  VWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKF 121
           VWP   +   + V+++ ++  T    +   +   +  D+  K  +K+  +R+ N ES+ 
Sbjct: 55  VWPST-EGVQEAVSMFMERPATEQSKLMMSH-ETYLQDKITKETKKLESLRRENRESQL 111

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|O80805|PHE1_ARATH MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 20/125 (16%)

Query: 3   RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVE 62
           RGK+ L  I+ +  R  T+ KRK+G+ KK  E  TLCGV  C +I  P  +        E
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQ------E 55

Query: 63  VWPKDH------KEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKAN 116
            WP          +FM+   L R K               F   R  K  E++ K+R  N
Sbjct: 56  PWPSREGVEEVMSKFMEFSVLDRTKKMVDQET--------FLRQRIAKETERLQKLRDEN 107

Query: 117 FESKF 121
             S+ 
Sbjct: 108 RNSQI 112

Probable transcription factor involved in the development of gametophytes and seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZJ6|AGL21_ARATH Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGP 50
          MGRGK+ ++ ID   +R +T+ KR++GL KKA+E A LC     +II+  
Sbjct: 1  MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSS 50

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6V4|AGL92_ARATH Agamous-like MADS-box protein AGL92 OS=Arabidopsis thaliana GN=AGL92 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 21/125 (16%)

Query: 3   RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVE 62
           R K  L LI     R  T++KR  G++KK  E  TLC +  C +IY P  N         
Sbjct: 2   RTKTKLVLIPDRHFRRATFRKRNAGIRKKLHELTTLCDIKACAVIYSPFENP-------T 54

Query: 63  VWPKDH------KEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKAN 116
           VWP          EFM+     R K   S           F  D+  K   K+  +R+ N
Sbjct: 55  VWPSTEGVQEVISEFMEKPATERSKTMMSHE--------TFLRDQITKEQNKLESLRREN 106

Query: 117 FESKF 121
            E++ 
Sbjct: 107 RETQL 111

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|A2RVQ5|AGL16_ARATH Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGP 50
          MGRGK+ +K I+   +R +T+ KR+ GL KKA+E A LC     +II+  
Sbjct: 1  MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSS 50

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRGK+ LK I+ + +R +T+ KR+ GL KKA E + LC     +II+  R      S  
Sbjct: 1   MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
             ++        + +  YR   + S      +N      + N + Y K+ K R    ++ 
Sbjct: 61  SCMY--------KTLERYRSCNYNSQDAAAPEN------EINYQEYLKL-KTRVEFLQTT 105

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKL 155
             + L ED    SM +L+     L+N I+V+ +++
Sbjct: 106 QRNILGEDLGPLSMKELE----QLENQIEVSLKQI 136

Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XDY1|MADS1_ORYSI MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRGK+ LK I+ + +R +T+ KR+ GL KKA E + LC     +II+  R      S  
Sbjct: 1   MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
             ++        + +  YR   + S      +N      + N + Y K+ K R    ++ 
Sbjct: 61  SCMY--------KTLERYRSCNYNSQDAAAPEN------EINYQEYLKL-KTRVEFLQTT 105

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKL 155
             + L ED    SM +L+     L+N I+V+ +++
Sbjct: 106 QRNILGEDLGPLSMKELE----QLENQIEVSLKQI 136

Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q07474|MADS2_PETHY Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYG 49
          MGRGK+ +K I+    R +TY KR+ G+ KKA+E   LC     +II+G
Sbjct: 1  MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFG 49

Transcription factor involved in the genetic control of flower development.

Petunia hybrida (taxid: 4102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
224054438	336	predicted protein [Populus trichocarpa]	0.898	0.842	0.350	2e-38
255546493	338	mads box protein, putative [Ricinus comm	0.838	0.781	0.314	1e-30
147854264	283	hypothetical protein VITISV_016405 [Viti	0.812	0.904	0.270	4e-25
357495775	315	MADS-box transcription factor [Medicago	0.492	0.492	0.377	1e-24
357495777	347	Agamous-like MADS-box protein AGL36 [Med	0.495	0.449	0.356	1e-21
421957996	319	MADS-box protein AGL86, partial [Aquileg	0.507	0.501	0.363	5e-21
224065525	406	predicted protein [Populus trichocarpa]	0.479	0.371	0.346	6e-21
224122246	390	predicted protein [Populus trichocarpa]	0.479	0.387	0.339	8e-21
255536889	386	conserved hypothetical protein [Ricinus	0.501	0.409	0.341	1e-20
357444935	386	MADS-box transcription factor [Medicago	0.492	0.401	0.339	5e-18

>gi|224054438|ref|XP_002298260.1| predicted protein [Populus trichocarpa] gi|222845518|gb|EEE83065.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/348 (35%), Positives = 178/348 (51%), Gaps = 65/348 (18%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRGKLT++LI  E++RMITY KRK+GL KKA+EF  LCGV  C+II GP+LN+HP  VD
Sbjct: 1   MGRGKLTMELIRNERSRMITYHKRKKGLTKKAREFQILCGVDACVIILGPKLNNHP--VD 58

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
           VE WP D  E  +++N +R +        K+Q+L  FF  R +K+ ++I K+RKA  E+K
Sbjct: 59  VETWPTDRIEVRRIINRFRSEG---TDRKKTQDLSYFFEARKKKLDDEIAKLRKACMEAK 115

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQV 180
           F +  D   N  S+ QL+ +  V ++ +DVA   +  +KG   N     D+ +  N+A  
Sbjct: 116 FPA-WDNRLNLLSLEQLRVLAGVFESKLDVARGWILKLKG---NPFLMEDSKSGINAAGS 171

Query: 181 LFQQPQPLASHH-------------------------VNMQLAS-YHHHEPIQMVSFDFN 214
           +  +   LAS                           ++M LA+ Y  H+  QM+ F+ N
Sbjct: 172 ISDKSSFLASSTLANALLPKNIELEALNHQPFSCAKPIDMPLATCYPSHQLQQMLPFNVN 231

Query: 215 PVDNPTMMMMLMNGGDQIQLG-------CNTTALYNHHHPMQHAVYCDPVGAMIENRVMM 267
           P+++P  M+M+MN  D  Q G         +T  YN+          DP   MI N +M 
Sbjct: 232 PINSP--MLMMMNHEDFGQFGGLSSSSTIKSTVQYNY----------DPATEMIGN-MMF 278

Query: 268 NNPRAAM--RFVGSTMQQFQPFIEQFP-------ALPSPQFNGFYGDN 306
           NNP   +   + G + Q   P+  Q P        L  PQF+ F+  N
Sbjct: 279 NNPSWELSASYHGPSRQPIFPY-RQGPMTQNVSSQLCIPQFSYFFDVN 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546493|ref|XP_002514306.1| mads box protein, putative [Ricinus communis] gi|223546762|gb|EEF48260.1| mads box protein, putative [Ricinus communis]

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 153/299 (51%), Gaps = 35/299 (11%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRGKL ++LI  EK+RMITY KRK+GL KK QEF  LC V  C+II+ P+ N+   S D
Sbjct: 1   MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFSPKFNNR--SFD 58

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
           +E WP +  E  +++N YR +        ++Q+L  FF  R +K+ E I K+RKA+ E+K
Sbjct: 59  IETWPSNRYEMRRIINRYRSQ---DNDRKRNQDLSHFFIARKKKIDEDIAKMRKAHMEAK 115

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQV 180
           + +  D   N   +H+L  +  VL + I+VAT ++  I+G   ++   +  +   +   +
Sbjct: 116 YPA-WDNRINLLQLHELSVLASVLQSKIEVATARVMKIRGESDHYFMVDSKSGIIHGGPI 174

Query: 181 LFQ-QPQPLASHHVN------MQLASYHH-HEPIQMVS-FDF---------------NPV 216
               +P P+A+   N      ++L ++++  +P    S FD                NP 
Sbjct: 175 SHNIRPNPMAATFANALVQKSLELEAFNNKQQPFYCTSQFDHPTSSHNQMLPALNVNNPT 234

Query: 217 DNPTMMMMLMNGGDQIQLGCNTTALYNHHHPMQHAVYCDPVGA---MIENRVMMNNPRA 272
           ++ T+M M+M  GD +       +       ++   Y DP      ++ N  MM +PRA
Sbjct: 235 NSSTLMTMMMANGDDLNQFSGECSSERACSIIKDVTYFDPPTTHHQLVGN--MMISPRA 291

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854264|emb|CAN81313.1| hypothetical protein VITISV_016405 [Vitis vinifera]

 Score =  121 bits (303), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 40/296 (13%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGR +L L+LI KEK+R IT+QKR  GLKKK  E +TLCGV  C+IIY    +  P  ++
Sbjct: 1   MGRSRLPLELIPKEKSRKITFQKRTMGLKKKTYEISTLCGVDACVIIYSWTSDDRP--ME 58

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
              WP + ++   ++N Y++ +     G+K+ +L  FF +R +K+ ++I K+     +  
Sbjct: 59  PIFWPSNPEKVKSIINRYKEHS-KEERGLKTLDLSGFFEERTKKIQKEISKLGHQGADQT 117

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYNDNNNANNSAQV 180
                D+  N+ S+ QL+ ++  L   ++V   ++ L+K                  +Q 
Sbjct: 118 KYPTWDDQLNDLSVDQLRELVNALGTKLEVIKSRVELLK-----------------MSQA 160

Query: 181 LFQQPQPLASHHVNMQLASYHH-HEP-------IQMVSFDFNPVDNPTMMMMLMNGGDQI 232
           L + P  +   + N  + S    H P       + +V     P+ NP M  ++M   +Q 
Sbjct: 161 LLEGPASVNLSYPNNAMPSTQSLHVPYPGTIDSMPLVPNPMTPMMNPRMTKVMMTSDNQ- 219

Query: 233 QLGCNTTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPFI 288
                      +  P+QH  Y DP   ++EN V  N   ++  +  + +    P+I
Sbjct: 220 -----------YTPPLQHPFYYDPTSGLLENIVYSNPGPSSCYYPPAMLPPILPYI 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495775|ref|XP_003618176.1| MADS-box transcription factor [Medicago truncatula] gi|355493191|gb|AES74394.1| MADS-box transcription factor [Medicago truncatula]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 98/159 (61%), Gaps = 4/159 (2%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRG+++++LI KE++R IT QKRK GL KKA+EF+ LC V  C+I+Y P L    G ++
Sbjct: 1   MGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQ-GYIE 59

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
            E WPKD +E  +V+  Y +         K+ ++ ++F +R +KV  +I K+RK   + K
Sbjct: 60  PETWPKDKREVQRVLQKYYETTID--RRPKTYDVQEYFKERMKKVELEIYKVRKERLKMK 117

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIK 159
           + +  DE +N+F   QL+  +  LD+ +D   +K+ + K
Sbjct: 118 YPT-WDESYNSFGNEQLRSFVRFLDSKLDACDQKMNMRK 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495777|ref|XP_003618177.1| Agamous-like MADS-box protein AGL36 [Medicago truncatula] gi|355493192|gb|AES74395.1| Agamous-like MADS-box protein AGL36 [Medicago truncatula]

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 4/160 (2%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRG+++++ I KEK+R I+ Q RK GL  K +E + LC V  C+I+Y P      G  +
Sbjct: 1   MGRGRVSVEFIQKEKSRKISLQTRKIGLMTKVEELSILCDVDACVILYAPNFEGQ-GYDE 59

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
            E WPKD KE  +++  Y +        +K+ N+ ++F +R +KV  +I K+RK  F+ K
Sbjct: 60  PETWPKDTKELQRILQRYYNTTID--RRLKTYNVQEYFKERMKKVEFEISKVRKEKFKMK 117

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKG 160
           + +  DE FN     QL+    +LD  +D    K+ ++KG
Sbjct: 118 YQT-WDESFNFLEDEQLRLFASILDFKLDACNLKMNMLKG 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|421957996|gb|AFX72875.1| MADS-box protein AGL86, partial [Aquilegia coerulea]

 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 5/165 (3%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGR KL L+LI KE AR  T+ +RK+GL+KK  EFATLCGV  CMIIYGP   ++     
Sbjct: 1   MGRAKLDLRLISKESARNATFVRRKKGLEKKIYEFATLCGVDACMIIYGPNNRNNACMSK 60

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
            E WP++  E  ++++ Y+          +S  L D F+ + +K+ +++ K+RK N E  
Sbjct: 61  PETWPRNEDEVYRIIDNYKKYEKEK----RSLGLADSFSVQKKKLGDELAKLRKKNDEIS 116

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNF 165
             S  D  + + S  Q++ +L ++D+ I++   K+  I+  +QN 
Sbjct: 117 QQSWEDRIY-DLSKDQMEQLLPMIDSKIEMINAKMISIEMMNQNM 160

Source: Aquilegia coerulea

Species: Aquilegia coerulea

Genus: Aquilegia

Family: Ranunculaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065525|ref|XP_002301840.1| predicted protein [Populus trichocarpa] gi|222843566|gb|EEE81113.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 5/156 (3%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MG+ ++ ++LI KEK+RM+T++KRK GL KKA EF+ LCGV  C+II+GP+       V 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKEKDDHQPVA 60

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
            E WP   +E   ++N Y+     S    +   + D+FAD+ +++  ++ ++ K   ++K
Sbjct: 61  PETWPPSSEEVRCIINRYK----GSDQPRRCYQVSDYFADKKKQIDSELARLHKQIIKAK 116

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLA 156
           + +  D+  N     QL+ ++  LD  ID+A +KL 
Sbjct: 117 YPA-WDDRLNRLYADQLRVIVGHLDAKIDLADKKLG 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122246|ref|XP_002318787.1| predicted protein [Populus trichocarpa] gi|222859460|gb|EEE97007.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 5/156 (3%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MG+ ++ ++LI KEK+RM+T++KRK GL KKA EF+ LCGV  C+II+GP+       V 
Sbjct: 1   MGQKRIKMELIRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKQKDDHQPVA 60

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
            E WP + +E   ++N Y+     S    +   + D+F D+ +++  ++ ++ K   ++K
Sbjct: 61  PETWPPNSEEVRCIINRYK----GSDQPRRCYQVSDYFVDKKKQIDSELARLHKQIIKAK 116

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLA 156
           + +  D+  N+    QL+ ++  LD  ID+A +KL 
Sbjct: 117 YPA-WDDRLNSLYADQLRVLVGHLDAKIDLADKKLG 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536889|ref|XP_002509511.1| conserved hypothetical protein [Ricinus communis] gi|223549410|gb|EEF50898.1| conserved hypothetical protein [Ricinus communis]

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 6/164 (3%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MG  ++ ++LI+KE  RM+TYQKRK+ L KK  EF+ LCGV  C+II+ P+    P    
Sbjct: 1   MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHKDQPVKKL 60

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
             VWP +  E   ++N Y+       + V       +F D+ +K+  +I K++K  +E+ 
Sbjct: 61  DTVWPPNSDEAKSIINKYKKTDQARCYLVSH-----YFLDKKKKLDVEISKLQKQVYEAI 115

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQN 164
           + S  D   +NFS  +L+ +L  L++ + VA +KL L + +  N
Sbjct: 116 YPS-WDIHLDNFSEDRLRVLLTRLESKLQVADQKLNLFQDNQNN 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444935|ref|XP_003592745.1| MADS-box transcription factor [Medicago truncatula] gi|355481793|gb|AES62996.1| MADS-box transcription factor [Medicago truncatula]

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 4/159 (2%)

Query: 1   MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
           MGRG+++++LI KEK+R  T+QKRK GL KK  EF+ LC V  C+++Y P      G  +
Sbjct: 1   MGRGRISMELIQKEKSRKSTFQKRKDGLMKKVNEFSILCDVDVCVVLYAPNFVGR-GFAE 59

Query: 61  VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
            E WPKD +   +++  Y +   TS    K  ++ ++F +R RK+  +I K+RK   +  
Sbjct: 60  PETWPKDKRAVERILQKYYNT--TSDRRPKIYDVQEYFKERIRKLEFEITKVRKEKLKMM 117

Query: 121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIK 159
           + +  +E FN+    QL      L+  +D   +K  ++K
Sbjct: 118 YPT-WNESFNSLGAEQLILFASKLEAKLDACNQKKHMLK 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2154588	294	AGL82 "AGAMOUS-like 82" [Arabi	0.479	0.513	0.354	2.1e-20
TAIR|locus:2162137	277	AT5G55690 [Arabidopsis thalian	0.457	0.519	0.337	1.7e-18
TAIR|locus:2074494	260	AT3G05860 [Arabidopsis thalian	0.355	0.430	0.336	6.3e-11
TAIR|locus:2206325	278	AGL38 "AGAMOUS-like 38" [Arabi	0.730	0.827	0.242	1.8e-10
TAIR|locus:2146774	218	AT5G26630 [Arabidopsis thalian	0.492	0.711	0.284	3.7e-10
TAIR|locus:2009457	163	AGL87 "AGAMOUS-like 87" [Arabi	0.219	0.423	0.407	2.2e-08
TAIR|locus:2152511	321	AGL80 "AGAMOUS-like 80" [Arabi	0.349	0.342	0.347	2.6e-08
TAIR|locus:2206280	279	PHE1 "PHERES1" [Arabidopsis th	0.736	0.831	0.250	1.5e-07
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.377	0.604	0.296	2.6e-07
UNIPROTKB|Q10PZ9	257	MADS1 "MADS-box transcription	0.161	0.198	0.450	7.1e-07

TAIR|locus:2154588 AGL82 "AGAMOUS-like 82" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 56/158 (35%), Positives = 90/158 (56%)

Query:     8 LKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKD 67
             L+ I  +K R+ TY+KRK  L KKAQEF+TLCGV TC+I+YGP   +     + E+WPKD
Sbjct:     8 LQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWPKD 67

Query:    68 HKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSSDLDE 127
               +   ++  Y+D   TS    K  N+  F  D  +    ++V  ++   E+K+SS  +E
Sbjct:    68 ETKVRAIIRKYKDTVSTSCR--KETNVETFVNDVGKG--NEVVTKKRVKRENKYSS-WEE 122

Query:   128 DFNNFSMHQLKGMLVVLDNNIDVA-TRK-LALIKGHHQ 163
               +  S  QL G+   +D+ ++ A TR+  ++ + +HQ
Sbjct:   123 KLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFRVNHQ 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2162137 AT5G55690 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 52/154 (33%), Positives = 83/154 (53%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
             MGR  + +  I  EK R+ TY+KRK  L KKA EF+TLCGV TC+I+YGP        ++
Sbjct:     1 MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query:    61 VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
              E+WPKD  +  +++  YRD A +S    K+  + +     N KV +  +  +   ++ K
Sbjct:    61 PELWPKDGSKVREILTKYRDTASSSC--TKTYTVQECLEKNNTKVEKPTIATKYPTWDKK 118

Query:   121 FSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRK 154
                 LD+     S++ L  + + ++N I  AT +
Sbjct:   119 ----LDQ----CSLNDLYAVFMAVENKIQEATNR 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2074494 AT3G05860 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 6.3e-11, P = 6.3e-11
 Identities = 42/125 (33%), Positives = 62/125 (49%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
             M R KL L  I  E  R  T+ KRK+GL KK  E + LCG+  C +IY P  NS+P    
Sbjct:     1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSP-FNSNP---- 55

Query:    61 VEVWPKDHK------EFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVK-IR 113
              EVWP + +       F  +  L ++K   S  G   QN+       N+K+ +   + ++
Sbjct:    56 -EVWPSNSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMK 114

Query:   114 KANFE 118
             +A F+
Sbjct:   115 EAMFQ 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206325 AGL38 "AGAMOUS-like 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 64/264 (24%), Positives = 116/264 (43%)

Query:     5 KLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVW 64
             K+ L LI+   +R  T+ KRK+G+ KK  E  TLCGV  C ++Y P  NS P     E W
Sbjct:     4 KMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSP-FNSIP-----EAW 57

Query:    65 PKDHKEFMQ-VVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESKFSS 123
             P   +E ++ VV+ + + +       K  +   F + R  K  E++ K+R  N  S+   
Sbjct:    58 PS--REGVEDVVSKFMELSVLD-RTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRE 114

Query:   124 DL------DEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCYXXXXXXXXS 177
              +      + +  N     L+ + + +D  ++  TR++ ++  + ++            +
Sbjct:   115 LMFGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVANAA 174

Query:   178 AQVLFQQPQPLASHHVNMQ---------LASYHHHEPIQMVSFDFN--PVDNPTMMMML- 225
             A V F  P     H+ N Q         L  ++   P ++  F+ N     N +M++ L 
Sbjct:   175 APVGFDGPM-FQYHNQNQQKPVQFQYQALYDFYDQIPKKIHGFNMNMNKDSNQSMVLDLN 233

Query:   226 --MNGGDQIQLGCNTTALYNHHHP 247
               +N G+   + C      N++HP
Sbjct:   234 QNLNDGEDEGIPCMDN---NNYHP 254

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2146774 AT5G26630 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 48/169 (28%), Positives = 83/169 (49%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
             M R K+ +  I+ E AR  T++KRK+GL KKAQE   LCGVP   ++     NS P  ++
Sbjct:     1 MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVV-----NS-PYELN 54

Query:    61 VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFESK 120
              EVWP   +   QVV+ ++  +       K  N   F   R  K  E   K+RK N E +
Sbjct:    55 PEVWPS-REAANQVVSQWKTMSVMD-KTKKMVNQETFLQQRITKATESWKKLRKENKELE 112

Query:   121 FSSDLDEDFNNFSM------HQLKGMLVVLDNNIDVATRKLALIKGHHQ 163
               + + +  +  ++       +L+    V++  +    R++ ++K +++
Sbjct:   113 MKNIMFDCLSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNNE 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2009457 AGL87 "AGAMOUS-like 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 31/76 (40%), Positives = 41/76 (53%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
             MGR K+T +LI     R +T++KRK GL KK  E   LCG+P C IIY       P    
Sbjct:     1 MGRRKVTHQLISDNATRRVTFRKRKDGLLKKIYELTVLCGLPACAIIYS-EYKDGP---- 55

Query:    61 VEVWPKDHKEFMQVVN 76
              E+WP +  E   ++N
Sbjct:    56 -ELWP-NLNEVRSILN 69

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2152511 AGL80 "AGAMOUS-like 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 41/118 (34%), Positives = 60/118 (50%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
             M R K+ L  I  + +R  T++KRK+GL KK  E +TLCG+  C IIY P  +++P    
Sbjct:     1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSP-YDTNP---- 55

Query:    61 VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKANFE 118
              EVWP +     +VV+ +R       H  K  +   F   R  K  E + + RK + E
Sbjct:    56 -EVWPSN-SGVQRVVSEFRTLPEMDQHK-KMVDQEGFLKQRIAKATETLRRQRKDSRE 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2206280 PHE1 "PHERES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 67/267 (25%), Positives = 109/267 (40%)

Query:     3 RGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVE 62
             RGK+ L  I+ +  R  T+ KRK+G+ KK  E  TLCGV  C +I  P       S+  E
Sbjct:     2 RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPY-----NSIQ-E 55

Query:    63 VWPKDHKEFMQVVNLYRDKAFTSVHGVKSQ-NLYDFFADRNRKVYEKIVKIRKANFESKF 121
              WP   +E ++ V + +   F+ +   K   +   F   R  K  E++ K+R  N  S+ 
Sbjct:    56 PWPS--REGVEEV-MSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQI 112

Query:   122 SSDL-------DEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHHQNFGCY---XXX 171
               DL       + D ++     L  + V L+  ++   R++ ++K + ++          
Sbjct:   113 R-DLMFGCLKGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGV 171

Query:   172 XXXXXSAQV-------LFQQPQPLASHHVNMQL-ASYHHHEPIQMVSFDFNPVDN--PTM 221
                   A V       + Q         V  Q  A Y  ++ I     DFN   N  P  
Sbjct:   172 APTVVDASVPIGFDGRMIQDQNQNQQEPVQFQYQALYDFYDQIPKKLHDFNMKMNIDPNQ 231

Query:   222 MMML-MNGGDQIQLGCNTTALYNHHHP 247
              M L +N G+   + C      N++HP
Sbjct:   232 SMNLDLNDGEDEGIPCMDN---NNYHP 255

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 134 (52.2 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 38/128 (29%), Positives = 64/128 (50%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVD 60
             MGRGK+ +K I+    R +TY KRK G+ KKA+E   LC     ++IYG       G + 
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSS-----GKMY 55

Query:    61 VEVWPKDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKI-VKIRKANFES 119
                 PK +   + +++ Y+  +   +   K +NL +   DR +K  E + +++R    E 
Sbjct:    56 EYCSPKTN--LIDMLDRYQRLSGNKLWDAKHENLQNEI-DRIKKENESMQIELRHLKGED 112

Query:   120 KFSSDLDE 127
               S + +E
Sbjct:   113 ITSLNYEE 120

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q10PZ9 MADS1 "MADS-box transcription factor 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 119 (46.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query:     1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
             MGRGK+ LK I+ + +R +T+ KR+ GL KKA E + LC     +II+  R
Sbjct:     1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGR 51

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-16
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	3e-16
smart00432	59	smart00432, MADS, MADS domain	5e-14
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	3e-11
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-08

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 72.2 bits (178), Expect = 1e-16
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGP 50
          GRGK+ +K I+ + +R +T+ KR+ GL KKA E + LC     +I++ P
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSP 49

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 11/85 (12%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDV 61
          GR K+ +K I+ +K R +T+ KR++GL KKA E +TLCG    +I+Y P      G + V
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSP-----SGKLYV 55

Query: 62 EVWPKD-----HKEFMQVVNLYRDK 81
            WP          F  +  L R K
Sbjct: 56 -FWPSSEVEGVISRFEVLSALERKK 79

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 65.3 bits (160), Expect = 5e-14
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
          GR K+ +K I+ +  R +T+ KR+ GL KKA E + LC     +I++ P 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPT 50

Length = 59

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
          GRGK+ +K I+    R +T+ KR+ GL KKA E + LC     +II+   
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSS 50

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 9  KLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
          K I+ +  R +T+ KR+ G+ KKA E + LC     +II+   
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSST 43

Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.94
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.93
smart00432	59	MADS MADS domain.	99.92
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.91
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.87
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.63
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.17
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.1
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	81.69

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=7e-31  Score=233.54  Aligned_cols=76  Identities=33%  Similarity=0.558  Sum_probs=70.9

Q ss_pred             CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963            1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD   80 (315)
Q Consensus         1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~   80 (315)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|.      +||++ .+|++|++||..
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~------~~~~~-~~~~~v~~~~~~   73 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYE------FGSSD-ESVDAVVDRFLN   73 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccc------cCCcc-hhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999875      58754 459999999998


Q ss_pred             ccc
Q 043963           81 KAF   83 (315)
Q Consensus        81 ~~~   83 (315)
                      ...
T Consensus        74 ~~~   76 (195)
T KOG0014|consen   74 LTE   76 (195)
T ss_pred             hhh
Confidence            766

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.94  E-value=1.2e-28  Score=190.57  Aligned_cols=73  Identities=29%  Similarity=0.570  Sum_probs=68.2

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK   81 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~   81 (315)
                      ||+||+|++|+|+++|++||+|||.||||||+|||+||||+||||||||+|++|.       |+  ++++++||+||++.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~-------f~--s~s~~~vl~ry~~~   71 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYE-------FS--SPSMEKIIERYQKT   71 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEE-------ec--CCCHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999876       54  46789999999987


Q ss_pred             cc
Q 043963           82 AF   83 (315)
Q Consensus        82 ~~   83 (315)
                      +.
T Consensus        72 ~~   73 (77)
T cd00265          72 SG   73 (77)
T ss_pred             cc
Confidence            65

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.93  E-value=3.2e-27  Score=185.09  Aligned_cols=74  Identities=35%  Similarity=0.658  Sum_probs=68.7

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK   81 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~   81 (315)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+      ++||+. . ++.+|++|...
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~------~~~~~~-~-~~~~l~~~~~~   72 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY------VFWPSS-E-VEGVISRFEVL   72 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcc------eecCcH-H-HHHHHHHHhhc
Confidence            899999999999999999999999999999999999999999999999999865      468754 3 99999999988


Q ss_pred             cc
Q 043963           82 AF   83 (315)
Q Consensus        82 ~~   83 (315)
                      +.
T Consensus        73 ~~   74 (83)
T cd00266          73 SA   74 (83)
T ss_pred             CH
Confidence            76

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.92  E-value=4.4e-26  Score=167.46  Aligned_cols=55  Identities=35%  Similarity=0.655  Sum_probs=53.5

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP   56 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~   56 (315)
                      ||+||+|++|+|+++|++||+|||.||+|||+||||||||+||+|||||+|+++.
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~   55 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYE   55 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeee
Confidence            8999999999999999999999999999999999999999999999999998764

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.91  E-value=1.3e-25  Score=165.09  Aligned_cols=55  Identities=36%  Similarity=0.696  Sum_probs=53.5

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP   56 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~   56 (315)
                      ||+||+|++|+|++.|++||+|||.||+|||+||||||||+||+|||||+|+++.
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~   55 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYE   55 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCccc
Confidence            7999999999999999999999999999999999999999999999999998765

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.87  E-value=2.7e-24  Score=153.36  Aligned_cols=48  Identities=42%  Similarity=0.715  Sum_probs=43.4

Q ss_pred             eEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963            9 KLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP   56 (315)
Q Consensus         9 k~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~   56 (315)
                      |+|+|++.|++||+|||.||||||+|||+||||+||||||||+|++|.
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~   48 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYT   48 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEE
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEE
Confidence            589999999999999999999999999999999999999999998865

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.63  E-value=5.7e-17  Score=151.30  Aligned_cols=55  Identities=31%  Similarity=0.504  Sum_probs=53.7

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP   56 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~   56 (315)
                      ||+||+|++|+|+..|.|||||||.|++|||+|||||+|.+|-|+|.|.+|.+|.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyT  117 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT  117 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEE
Confidence            7999999999999999999999999999999999999999999999999999876

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.17  E-value=7.8e-12  Score=121.71  Aligned_cols=56  Identities=27%  Similarity=0.447  Sum_probs=54.6

Q ss_pred             CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCC
Q 043963            1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHP   56 (315)
Q Consensus         1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~   56 (315)
                      |||+||.|..|+|+.+|.|||+||+.||+|||.||+||.|.+|.|+|.|..|+++.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~t  136 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHT  136 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceee
Confidence            78999999999999999999999999999999999999999999999999999875

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.10  E-value=1e-05  Score=65.26  Aligned_cols=63  Identities=11%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 043963           95 YDFFADRNRKVYEKIVKIRKANFESKFSSDLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKGHH  162 (315)
Q Consensus        95 ~~~l~~~ikKLkeei~kL~k~~~e~~~~~~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~~~  162 (315)
                      .+.+..++.+++.++..|+..     .+++.|++|++|+++||..|+..|+..+..||.|+.++..++
T Consensus        14 ~e~~~~e~~~L~~~~~~L~~~-----~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~   76 (100)
T PF01486_consen   14 HEELQQEIAKLRKENESLQKE-----LRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQ   76 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            344566677777777776644     456889999999999999999999999999999999988765

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=81.69  E-value=3.4  Score=30.50  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=32.3

Q ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 043963          124 DLDEDFNNFSMHQLKGMLVVLDNNIDVATRKLALIKG  160 (315)
Q Consensus       124 ~wge~L~~LSleEL~~Le~~LE~~Lk~Ir~Rk~~L~~  160 (315)
                      ..|++|+.||++||.+-+..|+.-+.+++..+..-..
T Consensus        13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K~a   49 (59)
T PF06698_consen   13 EIGEDLSLLSVEELEERIALLEAEIARLEAAIAKKSA   49 (59)
T ss_pred             ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999887766543

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		1e-04
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		3e-04
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		4e-04
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		4e-04
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		6e-04
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		7e-04

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
          MGR K+ +  I  ++ R +T+ KRK GL KKA E + LC     +II+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 48

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
          GR K+ +  I  E+ R +T+ KRK GL KKA E + LC     +II+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
          GR K+ +  I  E+ R +T+ KRK GL KKA E + LC     +II+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
          GR K+ +  I  E+ R +T+ KRK GL KKA E + LC     +II+
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIY 48
          GR K+ +  I  ++ R +T+ KRK GL KKA E + LC     +II+
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIF 47

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMII 47
          GR K+ ++ ID +  R  T+ KRK G+ KKA E +TL G    +++
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLV 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-13
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	3e-13
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	5e-13
1egw_A	77	MADS box transcription enhancer factor 2, polypept	6e-12
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
           GR K+ ++ ID +  R  T+ KRK G+ KKA E +TL G    +++    
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET 60

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 63.7 bits (155), Expect = 3e-13
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
           GR K+ ++ ID +  R  T+ KRK G+ KKA E +TL G    +++    
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET 59

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 63.3 bits (154), Expect = 5e-13
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
            R K+ +K I+ +  R +T+ KRK G+ KKA E + L G    +++    
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSET 66

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
          GR K+ +  I  E+ R +T+ KRK GL KKA E + LC     +II+   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS 50

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
          GR K+ +  I  E+ R +T+ KRK GL KKA E + LC     +II+   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 98/296 (33%)

Query: 60  DVEVWPKDH----KEFMQVVN-LY--RDKAFTSVHGV----KS-------QNLYDFFADR 101
           D +V+ K +    + ++++   L   R      + GV    K+        + Y      
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKM 180

Query: 102 NRKVY----------EKIVKIRKA---NFESKFSSDLDEDFNN--------------FSM 134
           + K++          E ++++ +      +  ++S  D   N                  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 135 HQLKGMLVVLDNNIDVATRKL--ALIKGHHQNFGC-----------YNDNNNANNSAQVL 181
              +  L+VL    +V   K   A       N  C            +  + A  +   L
Sbjct: 241 KPYENCLLVLL---NVQNAKAWNAF------NLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 182 FQQPQPLASHHVNMQLASYHHHE----PIQMVSFDFNPVDNPTMMMMLMNGGDQIQLGCN 237
                 L    V   L  Y        P ++++       NP  + ++    + I+ G  
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT------NPRRLSII---AESIRDGLA 342

Query: 238 TTALYNHHHPMQHAVYCDPVGAMIENRVMMNNPRAAMRFVGSTMQQFQPF-IEQFP 292
           T   + H       V CD +  +IE+ + +  P A  R      + F    +  FP
Sbjct: 343 TWDNWKH-------VNCDKLTTIIESSLNVLEP-AEYR------KMFDRLSV--FP 382

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 66  KDHKEFMQVVNLYRDKAFTSVHGVKSQNLYDFFADRNRKVYEKIVKIRKAN--FESKFSS 123
            D    +      R+KA         ++L ++   ++    E++ K +  N   +  F  
Sbjct: 101 LDAASKVMEQEW-REKA--------KKDLEEWNQRQS----EQVEKNKINNRIADKAFYQ 147

Query: 124 DLDED 128
             D D
Sbjct: 148 QPDAD 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	99.97
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.97
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.96
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.95
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.95

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=99.97  E-value=1.8e-32  Score=215.58  Aligned_cols=74  Identities=30%  Similarity=0.488  Sum_probs=70.1

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK   81 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~   81 (315)
                      ||+||+|++|+|+++|+|||+|||+||||||+|||||||||||||||||+|++|+       |++  ++++.||+||...
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-------f~s--~~~~~il~rY~~~   71 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-------YAS--TDMDKVLLKYTEY   71 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EES--SCHHHHHHHHHHC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-------eCC--CCHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999876       765  7899999999998


Q ss_pred             ccc
Q 043963           82 AFT   84 (315)
Q Consensus        82 ~~~   84 (315)
                      +..
T Consensus        72 ~~~   74 (90)
T 3p57_A           72 NEP   74 (90)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            763

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.97  E-value=1.3e-32  Score=211.07  Aligned_cols=73  Identities=30%  Similarity=0.494  Sum_probs=67.7

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK   81 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~   81 (315)
                      ||+||+|++|+|+++|+|||+|||+||||||+|||||||||||||||||+||+|+       |++  ++++.||+||...
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-------~~s--~~~~~il~ry~~~   71 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-------YAS--TDMDKVLLKYTEY   71 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-------EES--SCHHHHHHHHHHC
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-------CCC--CCHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999876       754  6899999999987


Q ss_pred             cc
Q 043963           82 AF   83 (315)
Q Consensus        82 ~~   83 (315)
                      ..
T Consensus        72 ~~   73 (77)
T 1egw_A           72 NE   73 (77)
T ss_dssp             --
T ss_pred             cC
Confidence            65

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.96  E-value=4.9e-31  Score=210.90  Aligned_cols=72  Identities=25%  Similarity=0.426  Sum_probs=67.3

Q ss_pred             CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963            1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD   80 (315)
Q Consensus         1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~   80 (315)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+||+|+       |+  +++++.||+||..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~--sps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-------FS--TPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------EE--CTTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-------ec--CCCHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999876       64  4689999999865


Q ss_pred             c
Q 043963           81 K   81 (315)
Q Consensus        81 ~   81 (315)
                      .
T Consensus        87 ~   87 (100)
T 1mnm_A           87 R   87 (100)
T ss_dssp             H
T ss_pred             C
Confidence            4

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.95  E-value=8.5e-31  Score=206.86  Aligned_cols=71  Identities=25%  Similarity=0.425  Sum_probs=66.3

Q ss_pred             CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963            1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD   80 (315)
Q Consensus         1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~   80 (315)
                      |||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+       |+  +++++.||++|..
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-------f~--s~~~~~~i~~~~G   80 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FA--TRKLQPMITSETG   80 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-------EE--CGGGGGGTSSHHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-------ec--CCCHHHHHhhhcc
Confidence            89999999999999999999999999999999999999999999999999999876       65  4789999997644

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.95  E-value=2.8e-30  Score=207.71  Aligned_cols=70  Identities=26%  Similarity=0.430  Sum_probs=65.6

Q ss_pred             CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhh
Q 043963            1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYR   79 (315)
Q Consensus         1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~   79 (315)
                      |||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||||||||+|++|+       |+  +++++.||+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-------f~--s~~~~~vi~~~~   78 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------FA--TRKLQPMITSET   78 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-------EE--CGGGGGGTSSHH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-------ec--CccHHHHHHhhh
Confidence            89999999999999999999999999999999999999999999999999999876       64  478999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-16
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-16
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	9e-16

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (175), Expect = 1e-16
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 1  MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
           GR K+ ++ ID +  R  T+ KRK G+ KKA E +TL G    +++    
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASET 52

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (173), Expect = 2e-16
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
          GR K+ +  I  E+ R +T+ KRK GL KKA E + LC     +II+   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSS 50

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (169), Expect = 9e-16
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 2  GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPR 51
           R K+ +K I+ +  R +T+ KRK G+ KKA E + L G    +++    
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSET 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.97
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.96
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.95

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.6e-33  Score=206.75  Aligned_cols=70  Identities=31%  Similarity=0.545  Sum_probs=66.3

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD   80 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~   80 (315)
                      ||+||+|++|+|+..|+|||+|||+||||||+|||+||||+||||||||+|++++       |++  +++++||+||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~-------f~s--~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-------YAS--TDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-------EES--SCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEE-------eeC--CCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999765       764  689999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-31  Score=203.96  Aligned_cols=72  Identities=26%  Similarity=0.431  Sum_probs=67.4

Q ss_pred             CCCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhh
Q 043963            1 MGRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRD   80 (315)
Q Consensus         1 MgR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~   80 (315)
                      +||+||+|++|+|++.|+|||+|||.||||||+||||||||+||||||||+|++|.       |  ++|+++.||++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~-------f--~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-------F--ATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEE-------E--ECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEE-------e--eCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999876       4  46899999999965


Q ss_pred             c
Q 043963           81 K   81 (315)
Q Consensus        81 ~   81 (315)
                      .
T Consensus        73 ~   73 (84)
T d1srsa_          73 K   73 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.8e-31  Score=203.72  Aligned_cols=73  Identities=25%  Similarity=0.434  Sum_probs=68.0

Q ss_pred             CCcccceeEccCCccccccccccccchhhhhhhhhhhcCCCeEEEEecCCCCCCCCCCcccccCCCchhHHHHHHHhhhc
Q 043963            2 GRGKLTLKLIDKEKARMITYQKRKRGLKKKAQEFATLCGVPTCMIIYGPRLNSHPGSVDVEVWPKDHKEFMQVVNLYRDK   81 (315)
Q Consensus         2 gR~KI~ik~Ien~~~RqvTFsKRR~GL~KKA~ELSiLCdveVavIVfSp~gK~~~~~~~p~~wPs~~~sV~~VIdRY~~~   81 (315)
                      ||+||+|++|+|++.|+|||+|||.||||||+||||||||+||||||||+|++|+       |  ++|+|+.||+||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~-------f--~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-------F--STPKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-------E--ECTTTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEe-------c--cCCCHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999999999999999999865       4  568999999999865


Q ss_pred             cc
Q 043963           82 AF   83 (315)
Q Consensus        82 ~~   83 (315)
                      ..
T Consensus        74 ~~   75 (85)
T d1mnma_          74 NL   75 (85)
T ss_dssp             HH
T ss_pred             cH
Confidence            43