Citrus Sinensis ID: 043977

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-----
MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS
ccccccccccccEEEEEccccccHHHccccHHHHHHccccEEEEccccccccccccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHccccccccccEEEcccccccccccEEEEccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccccccHHHccccHHHHHHHHHHHccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEccccccccccccc
cccccccccccEEEEEEccccHHHHHHHHcHHHHHHcccEEEEcccccccccccccEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHcccEccccEEEEccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHEEEHHHHHHccccccHHHHHHHHHHHcccHcHHHHHHHHHHccccEEcccccccccccccccccccccHcccccccccEEEccccHHHHHHHHHHHHccccHcccccccccccccccccccccccccccccccccHHccccccccHHcccccccccccccccccccccccccHHHHccccEEEEEEEccccHHHHHHHHHHHHHcccEEEEEccccccHHHHcc
mlestnadskSWKVLIMDKVTVKVMshsckmadiTDRGVSLVEDLFrrrqplpsmdavyfiqpsKENVVMFLSdmsgreplyKKAYVFFSTPIPKELVNhiksdtsvlprigalremnleyfpidrqaFITDHERALEElfgdnvqntrQFDTCLNTMAKRIATVFASMkefpmvryrapkasdastttfrDLIPSKLATAVWNCIEkyksipnfpqtetcELLILDRSVDQIAPVIHEWTYDAMCHDlldmdgnkyvlevpsktggqpekkevlledhDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQssrdggelsTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIglrdlgqleqdlvfgdagAKDVINFLRmkqdvtpenKLRLLMIYASvypekfegdKASKLMQLARLSSEDMKIVNNMRLLAGslnskksstdfslkfdgqKTKQAarkerpgeeetwALFKFYPIIEELIENLckgelpksdypcmnhpssaeqestsrfsvrkkaapattapsekktghsvrsrrtpswakpqnsddgyssdsILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVlgstsfndppeyis
mlestnadskswkvLIMDKVTVKVMshsckmaditdrGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEElfgdnvqntRQFDTCLNTMAKRIATVFASMKEFPMVRyrapkasdastttfrDLIPSKLATAVWNCIEKyksipnfpqTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEVPsktggqpekkevLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQqssrdggelsTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRmkqdvtpenkLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSlnskksstdfslkfdgqktkqaarkerpgeeetwALFKFYPIIEELIENLCKGELPKSDYPCMNHPSsaeqestsrfSVRKkaapattapsekktghsvrsrrtpswakpqnsddgyssDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTtklrrevvlgstsfndppeyis
MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS
***********WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKA*DASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEV************VLLEDHDPVWLELRHAHIAD**************************************IVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFE**************************************************************TWALFKFYPIIEELIENLCKGEL******************************************************************ILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLG************
********SKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVW******************ELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYV*****************LEDHDPVWLELRHAHIADASERLHDKMT************************DLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRL************************************TWALFKFYPIIEELIENLCKGELPKSDYPCMNHP*******************************************************************GQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS
*********KSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVS******************TRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKF****************EETWALFKFYPIIEELIENLCKGELPKSDYPCMN*****************************************************SSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSF********
********SKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQ*********ELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNS***************************EETWALFKFYPIIEELIENLCKGELPKSDYPCMNHP*********R**************************************************V****KMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query625 2.2.26 [Sep-21-2011]
Q9C5P7673 Protein transport Sec1a O yes no 0.987 0.916 0.746 0.0
Q9C5X3666 SNARE-interacting protein no no 0.982 0.921 0.703 0.0
Q5VNU3659 Probable protein transpor yes no 0.961 0.911 0.660 0.0
Q7XWP3665 Probable protein transpor yes no 0.984 0.924 0.639 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.964 0.910 0.619 0.0
Q54QC8598 Protein transport protein yes no 0.878 0.918 0.293 1e-67
Q6R748594 Syntaxin-binding protein yes no 0.849 0.893 0.293 3e-66
P61765594 Syntaxin-binding protein yes no 0.849 0.893 0.293 4e-66
Q5R6D2594 Syntaxin-binding protein yes no 0.849 0.893 0.293 4e-66
O08599594 Syntaxin-binding protein yes no 0.849 0.893 0.293 4e-66
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function desciption
 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/626 (74%), Positives = 537/626 (85%), Gaps = 9/626 (1%)

Query: 1   MLEST-NADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVY 59
           ML ST   DSK+WK+LIMD+VTVKVMS SCKMADITD+G+SLVE+LF+RR+P+P MDA+Y
Sbjct: 33  MLGSTKTGDSKAWKILIMDRVTVKVMSQSCKMADITDQGISLVEELFKRREPMPGMDAIY 92

Query: 60  FIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNL 119
           FIQPSKEN+VMFLSDMSGREPLY+KA++FFS+ IPKELVNHIKSD+SVLPRIGALREMN+
Sbjct: 93  FIQPSKENIVMFLSDMSGREPLYRKAFIFFSSTIPKELVNHIKSDSSVLPRIGALREMNM 152

Query: 120 EYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRA 179
           EYFPID Q F+TDHE+ALE L+ ++ +N+R F  CLN MA RIATVFAS+KE P VRYRA
Sbjct: 153 EYFPIDNQGFLTDHEQALETLYAEDAENSRHFHICLNIMATRIATVFASLKELPFVRYRA 212

Query: 180 PKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHE 239
                A +T  RDL+PSKLA A+W+CI KYK+IPNFPQTETCELLI+DRSVDQIAP+IHE
Sbjct: 213 -----AKSTASRDLVPSKLAAAIWDCISKYKAIPNFPQTETCELLIVDRSVDQIAPIIHE 267

Query: 240 WTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLH 299
           WTYDAMCHDLLDM+GNK+V+EVPSKTGG PEKKE++LEDHDPVWLELRH HIADASERLH
Sbjct: 268 WTYDAMCHDLLDMEGNKHVIEVPSKTGGPPEKKEIVLEDHDPVWLELRHTHIADASERLH 327

Query: 300 DKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHI 359
           +KMTNF SKNKAAQ++  SRDG ELSTRDLQKIVQALPQY EQVDKLS HVE+AGKIN I
Sbjct: 328 EKMTNFASKNKAAQMR--SRDGSELSTRDLQKIVQALPQYGEQVDKLSTHVELAGKINRI 385

Query: 360 IREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDK 419
           IR+ GLRDLGQLEQDLVFGDAGAKDVINFLR  QD  PENKLRLLMIYA+VYPEKFEGDK
Sbjct: 386 IRDTGLRDLGQLEQDLVFGDAGAKDVINFLRTNQDTNPENKLRLLMIYATVYPEKFEGDK 445

Query: 420 ASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEEET 479
             KLMQLARLS  DMK+++NM+L+AGS  +K  S  FSLKFD  KTKQA RK+R GEEET
Sbjct: 446 GVKLMQLARLSPVDMKVISNMQLIAGSPENKAKSGSFSLKFDAGKTKQANRKDRSGEEET 505

Query: 480 WALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEK 539
           W LF+FYP+IEEL+E L KG+L KSDY CMN  S  E+      SVRK +AP T  P  K
Sbjct: 506 WQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQSSHKEESEARTGSVRKSSAP-TAVPERK 564

Query: 540 KTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRAC 599
            T HS+RSRRT +WA+P +SDDGYSSDS+L  A  + +K+GQRIFVF+IGGATRSELR C
Sbjct: 565 ATPHSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGGATRSELRVC 624

Query: 600 YKLTTKLRREVVLGSTSFNDPPEYIS 625
           +KLT+ LRREVVLGSTSF+DPP+YI+
Sbjct: 625 HKLTSSLRREVVLGSTSFDDPPQYIT 650
Involved in the vesicle trafficking. Binds syntaxins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1 Back     alignment and function description
>sp|P61765|STXB1_RAT Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R6D2|STXB1_PONAB Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1 Back     alignment and function description
>sp|O08599|STXB1_MOUSE Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query625
255541310676 plant sec1, putative [Ricinus communis] 0.995 0.920 0.768 0.0
224127382665 predicted protein [Populus trichocarpa] 0.982 0.923 0.769 0.0
225453899665 PREDICTED: protein transport Sec1a [Viti 0.982 0.923 0.773 0.0
449454638672 PREDICTED: protein transport Sec1a-like 0.980 0.912 0.743 0.0
449498992682 PREDICTED: protein transport Sec1a-like 0.980 0.898 0.743 0.0
296089145683 unnamed protein product [Vitis vinifera] 0.982 0.898 0.751 0.0
312283201675 unnamed protein product [Thellungiella h 0.987 0.914 0.744 0.0
297848302663 hypothetical protein ARALYDRAFT_470074 [ 0.974 0.918 0.738 0.0
145334974673 protein transport sec1a [Arabidopsis tha 0.987 0.916 0.746 0.0
356506355669 PREDICTED: protein transport Sec1a-like 0.987 0.922 0.744 0.0
>gi|255541310|ref|XP_002511719.1| plant sec1, putative [Ricinus communis] gi|223548899|gb|EEF50388.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/630 (76%), Positives = 551/630 (87%), Gaps = 8/630 (1%)

Query: 1   MLEST-NADSKS-WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAV 58
           ML ST   +SKS WKVLIMDKVTVKVMSHSCKM+DITD+G+SLVEDLFRRR+PLPSMDA+
Sbjct: 30  MLGSTRTGESKSTWKVLIMDKVTVKVMSHSCKMSDITDQGISLVEDLFRRREPLPSMDAI 89

Query: 59  YFIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMN 118
           YF+QPSKENVVMFLSDMSGREPLYKKA+VFFS+P+PKELVNHIK DTSVLPRIGALREMN
Sbjct: 90  YFVQPSKENVVMFLSDMSGREPLYKKAFVFFSSPVPKELVNHIKCDTSVLPRIGALREMN 149

Query: 119 LEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYR 178
           LEYFPID QAF TDH+ ALEEL+G+N +N+R+FD CLN MA RIATVFAS+KE P VRYR
Sbjct: 150 LEYFPIDSQAFTTDHDGALEELYGENAENSRRFDACLNVMATRIATVFASLKELPCVRYR 209

Query: 179 APKA-SDASTT-TFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPV 236
           A K   DASTT TFRD IP+KLATA+WNC+ KYKSIPNFPQ ETCELLILDRS+DQIAPV
Sbjct: 210 AAKTLDDASTTATFRDTIPTKLATAIWNCMSKYKSIPNFPQNETCELLILDRSIDQIAPV 269

Query: 237 IHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASE 296
           IHEWTYDAMCHDLLDMDGNKY LEVPSK GG+PE+KEVLL+D+DPVWLELRHAHIADASE
Sbjct: 270 IHEWTYDAMCHDLLDMDGNKYALEVPSKKGGEPERKEVLLDDNDPVWLELRHAHIADASE 329

Query: 297 RLHDKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKI 356
           RL+DKMTN + KNKAAQ+QQ++RDG E+STRDLQK+VQALP+Y+EQ++KLSLHVEIAGKI
Sbjct: 330 RLYDKMTN-LKKNKAAQMQQNARDGAEISTRDLQKVVQALPKYNEQIEKLSLHVEIAGKI 388

Query: 357 NHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFE 416
           N II ++GLR+LGQLEQDLVFGDAG  +VINFLR KQD +PENKLRLL+IYA VYPEKFE
Sbjct: 389 NSIITKLGLRELGQLEQDLVFGDAGGVEVINFLRTKQDASPENKLRLLIIYACVYPEKFE 448

Query: 417 GDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGE 476
           GDKA+KLMQLA+LS  DMK V NMRLL GS  +KK+S  FSLKF+ QKTK AARK+R GE
Sbjct: 449 GDKATKLMQLAKLSETDMKAVKNMRLLVGSSVTKKASGSFSLKFNNQKTKTAARKDRTGE 508

Query: 477 EETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSA-EQESTSRFSVRKKAAPATTA 535
           EETW LF+FYP++EELIEN+ KGELPK++Y CMN PSSA E E T + S R   AP   A
Sbjct: 509 EETWQLFRFYPMLEELIENVNKGELPKNEYSCMNEPSSAVEPEETKKGSGRTSNAPV--A 566

Query: 536 PSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSE 595
           P  K   HS+RSRRT +WA+P  SDDGYSSDS+L +A  DL+KMGQRIF+F+IGGATRSE
Sbjct: 567 PERKAPAHSMRSRRTATWARPHLSDDGYSSDSVLKNASTDLKKMGQRIFIFIIGGATRSE 626

Query: 596 LRACYKLTTKLRREVVLGSTSFNDPPEYIS 625
           LR C+KLTTKLRREVVLG TS +D P Y++
Sbjct: 627 LRVCHKLTTKLRREVVLGCTSLDDAPRYVT 656

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224127382|ref|XP_002320060.1| predicted protein [Populus trichocarpa] gi|222860833|gb|EEE98375.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453899|ref|XP_002278966.1| PREDICTED: protein transport Sec1a [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454638|ref|XP_004145061.1| PREDICTED: protein transport Sec1a-like [Cucumis sativus] gi|449472983|ref|XP_004153750.1| PREDICTED: protein transport Sec1a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449498992|ref|XP_004160690.1| PREDICTED: protein transport Sec1a-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296089145|emb|CBI38848.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|312283201|dbj|BAJ34466.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|297848302|ref|XP_002892032.1| hypothetical protein ARALYDRAFT_470074 [Arabidopsis lyrata subsp. lyrata] gi|297337874|gb|EFH68291.1| hypothetical protein ARALYDRAFT_470074 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145334974|ref|NP_563643.4| protein transport sec1a [Arabidopsis thaliana] gi|229470545|sp|Q9C5P7.3|SEC1A_ARATH RecName: Full=Protein transport Sec1a; Short=AtSec1a gi|332189244|gb|AEE27365.1| protein transport sec1a [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356506355|ref|XP_003521950.1| PREDICTED: protein transport Sec1a-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query625
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.987 0.916 0.746 9.4e-256
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.982 0.921 0.707 5.2e-239
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.964 0.910 0.623 1.6e-205
UNIPROTKB|F1MXB4592 STXBP3 "Uncharacterized protei 0.459 0.484 0.333 2e-61
ZFIN|ZDB-GENE-040426-2833590 stxbp3 "syntaxin binding prote 0.441 0.467 0.319 9.2e-61
UNIPROTKB|E7EQD5604 STXBP2 "Syntaxin-binding prote 0.772 0.799 0.278 2.3e-60
UNIPROTKB|O00186592 STXBP3 "Syntaxin-binding prote 0.459 0.484 0.330 3.7e-60
UNIPROTKB|E2QUA6592 STXBP3 "Uncharacterized protei 0.459 0.484 0.323 3.7e-60
MGI|MGI:107362592 Stxbp3a "syntaxin binding prot 0.459 0.484 0.323 1.4e-58
ZFIN|ZDB-GENE-060531-166605 stxbp1b "syntaxin binding prot 0.689 0.712 0.296 9.9e-58
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2462 (871.7 bits), Expect = 9.4e-256, P = 9.4e-256
 Identities = 467/626 (74%), Positives = 537/626 (85%)

Query:     1 MLESTNA-DSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVY 59
             ML ST   DSK+WK+LIMD+VTVKVMS SCKMADITD+G+SLVE+LF+RR+P+P MDA+Y
Sbjct:    33 MLGSTKTGDSKAWKILIMDRVTVKVMSQSCKMADITDQGISLVEELFKRREPMPGMDAIY 92

Query:    60 FIQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNL 119
             FIQPSKEN+VMFLSDMSGREPLY+KA++FFS+ IPKELVNHIKSD+SVLPRIGALREMN+
Sbjct:    93 FIQPSKENIVMFLSDMSGREPLYRKAFIFFSSTIPKELVNHIKSDSSVLPRIGALREMNM 152

Query:   120 EYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRA 179
             EYFPID Q F+TDHE+ALE L+ ++ +N+R F  CLN MA RIATVFAS+KE P VRYRA
Sbjct:   153 EYFPIDNQGFLTDHEQALETLYAEDAENSRHFHICLNIMATRIATVFASLKELPFVRYRA 212

Query:   180 PKASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFPQTETCELLILDRSVDQIAPVIHE 239
              K+     T  RDL+PSKLA A+W+CI KYK+IPNFPQTETCELLI+DRSVDQIAP+IHE
Sbjct:   213 AKS-----TASRDLVPSKLAAAIWDCISKYKAIPNFPQTETCELLIVDRSVDQIAPIIHE 267

Query:   240 WTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLH 299
             WTYDAMCHDLLDM+GNK+V+EVPSKTGG PEKKE++LEDHDPVWLELRH HIADASERLH
Sbjct:   268 WTYDAMCHDLLDMEGNKHVIEVPSKTGGPPEKKEIVLEDHDPVWLELRHTHIADASERLH 327

Query:   300 DKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHI 359
             +KMTNF SKNKAAQ++  SRDG ELSTRDLQKIVQALPQY EQVDKLS HVE+AGKIN I
Sbjct:   328 EKMTNFASKNKAAQMR--SRDGSELSTRDLQKIVQALPQYGEQVDKLSTHVELAGKINRI 385

Query:   360 IREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIYASVYPEKFEGDK 419
             IR+ GLRDLGQLEQDLVFGDAGAKDVINFLR  QD  PENKLRLLMIYA+VYPEKFEGDK
Sbjct:   386 IRDTGLRDLGQLEQDLVFGDAGAKDVINFLRTNQDTNPENKLRLLMIYATVYPEKFEGDK 445

Query:   420 ASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEEET 479
               KLMQLARLS  DMK+++NM+L+AGS  +K  S  FSLKFD  KTKQA RK+R GEEET
Sbjct:   446 GVKLMQLARLSPVDMKVISNMQLIAGSPENKAKSGSFSLKFDAGKTKQANRKDRSGEEET 505

Query:   480 WALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEK 539
             W LF+FYP+IEEL+E L KG+L KSDY CMN  S  E+      SVRK +AP T  P  K
Sbjct:   506 WQLFRFYPMIEELLEKLVKGDLSKSDYLCMNQSSHKEESEARTGSVRKSSAP-TAVPERK 564

Query:   540 KTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRAC 599
              T HS+RSRRT +WA+P +SDDGYSSDS+L  A  + +K+GQRIFVF+IGGATRSELR C
Sbjct:   565 ATPHSMRSRRTATWARPHSSDDGYSSDSVLKSASTEFKKLGQRIFVFIIGGATRSELRVC 624

Query:   600 YKLTTKLRREVVLGSTSFNDPPEYIS 625
             +KLT+ LRREVVLGSTSF+DPP+YI+
Sbjct:   625 HKLTSSLRREVVLGSTSFDDPPQYIT 650
GO:0005634 "nucleus" evidence=ISM
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXB4 STXBP3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2833 stxbp3 "syntaxin binding protein 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E7EQD5 STXBP2 "Syntaxin-binding protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O00186 STXBP3 "Syntaxin-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUA6 STXBP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:107362 Stxbp3a "syntaxin binding protein 3A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060531-166 stxbp1b "syntaxin binding protein 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XWP3SEC1A_ORYSJNo assigned EC number0.63910.9840.9248yesno
Q5VNU3SEC1B_ORYSJNo assigned EC number0.66070.96160.9119yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.70310.98240.9219nono
Q9C5P7SEC1A_ARATHNo assigned EC number0.74600.98720.9167yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
pfam00995554 pfam00995, Sec1, Sec1 family 1e-146
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 3e-57
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  434 bits (1119), Expect = e-146
 Identities = 175/620 (28%), Positives = 316/620 (50%), Gaps = 74/620 (11%)

Query: 12  WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
           WKVL++DK T K++S    ++D+ + GV+LVE++  +R+PLP + A+YFI+P++ENV   
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRI 60

Query: 72  LSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFIT 131
           + D+  + P YK  ++FF+  + + L+  +     V   +  ++E+ L++ P++   F  
Sbjct: 61  IDDL--KNPKYKSYHIFFTNSLSRSLLERLAEAD-VAELVKQVKEIYLDFIPLESDLFSL 117

Query: 132 DHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDASTTTFR 191
           +   +  +L+     +    ++ L  +A+ + ++  ++ E P++RY+   A+        
Sbjct: 118 ELPNSFRDLY-----SPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNSAA-------- 164

Query: 192 DLIPSKLATAVWNCIEKYKSIPN--FPQTETCELLILDRSVDQIAPVIHEWTYDAMCHDL 249
           + +  KLA  +   ++ + +      P      LLILDRS+D I P++H+WTY AM HDL
Sbjct: 165 ERLAEKLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDL 224

Query: 250 LDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKN 309
           L +  N+  L+ P   G    KKEV+L+++DP W+E RH H  D +E++  ++  +  +N
Sbjct: 225 LGIKNNRVTLDTPGNGGE--SKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEEN 282

Query: 310 KAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLG 369
           K +  +       + S  DL++ V+ LP++ ++  KLSLH+ +A ++   I+E  L  + 
Sbjct: 283 KNSNKK-------KKSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVS 335

Query: 370 QLEQDLVFGDAGAKDVINFLRMKQD--VTPENKLRLLMIYA-SVYPEKFEGDKASKLMQL 426
           +LEQDL  G    K   + L +  +  V  E+KLRLL++Y+     +  + +   KL+  
Sbjct: 336 ELEQDLATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDGGKGKDLEDLRKLLLH 395

Query: 427 ARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEEETWALFKFY 486
           A +  E + +V N+  L G L S+ S ++FS   D  K       +   +     L ++ 
Sbjct: 396 AGIGPEALNLVKNLEQL-GGLLSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRYK 454

Query: 487 PIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVR 546
           P+++ ++E+L KG+L    YP                    K A A+          S+R
Sbjct: 455 PLLKRILEDLIKGKLDTDSYPY----------------FDPKLANASGP------QGSLR 492

Query: 547 SRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKL 606
           S+R  +                        R+  QRI VF++GG T SE RA Y+L+ K 
Sbjct: 493 SKRPTAA--------------------GQGRQPPQRIIVFVVGGVTYSEARALYELSKKT 532

Query: 607 -RREVVLGSTSFNDPPEYIS 625
             + V++GSTS  +P  ++ 
Sbjct: 533 NGKRVIIGSTSILNPESFLE 552

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 625
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-101  Score=804.89  Aligned_cols=551  Identities=42%  Similarity=0.729  Sum_probs=474.2

Q ss_pred             CCCC-cEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcCCCCCcceEE
Q 043977            8 DSKS-WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSGREPLYKKAY   86 (625)
Q Consensus         8 ~~~~-~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~~~~~y~~~~   86 (625)
                      ..+| |||||+|+.+++++|+||+|++++++|||+++.|++.|+|+|.++|||||+|+.+++++++.||....|.|+.+|
T Consensus        19 ~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~~~V~~~i~Df~~~~~~Y~~ah   98 (593)
T KOG1300|consen   19 EKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTEESVDCLIKDFEGRSPLYKAAH   98 (593)
T ss_pred             CCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCchhhHHHHHHhhcccCcccceEE
Confidence            4456 999999999999999999999999999999999999999999999999999999999999999976668999999


Q ss_pred             EEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHHHHHHHHH
Q 043977           87 VFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVF  166 (625)
Q Consensus        87 i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia~~L~sl~  166 (625)
                      |||+.+||+.++..+... .+...|+++.|++++|+|+|+++|+++.|++|..+|.+.  +.......++.+|++|++||
T Consensus        99 ifF~~~c~~~lf~~l~ks-~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~--~a~~~~~~l~~~a~~I~tvC  175 (593)
T KOG1300|consen   99 IFFLDPCPDPLFNKLSKS-RAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD--NAAIIDANLEKIADQIATVC  175 (593)
T ss_pred             EEEcCCCCHHHHHHHHhh-hHhhhhhhheecccccceecceeeeecChhhHHHhcCch--hhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999743 467889999999999999999999999999999999954  44556789999999999999


Q ss_pred             HHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCCCCCCCeeEEEecCCCCccccccchhchhHH
Q 043977          167 ASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNFPQTETCELLILDRSVDQIAPVIHEWTYDAM  245 (625)
Q Consensus       167 ~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqaL  245 (625)
                      .++|++|.|||++.....+      ..+|+++|.++++.++.|+. -+++|+.+++.|||+||++|+++||||+||||||
T Consensus       176 atL~e~P~vRy~~~~~~~a------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM  249 (593)
T KOG1300|consen  176 ATLGEYPNVRYRGDFARNA------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAM  249 (593)
T ss_pred             HHhCcCcceeeccccccCH------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHH
Confidence            9999999999998865544      26899999999999999986 4466777799999999999999999999999999


Q ss_pred             hhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCCC
Q 043977          246 CHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQQSSRDGGELS  325 (625)
Q Consensus       246 i~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s  325 (625)
                      +||+++|+++.|.|+.+.+.|++  +|+++|+++|++|.++||+||++|.+.|++.+++|..+++....+     ++..|
T Consensus       250 ~~DLl~iend~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~~-----~k~~S  322 (593)
T KOG1300|consen  250 AYDLLPIENDVYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQTK-----SKETS  322 (593)
T ss_pred             HHHHHhhcCCEEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----ccccc
Confidence            99999999999999886555533  789999999999999999999999999999999999887654432     34579


Q ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC-hHH-------HHHHHhcCCCCCc
Q 043977          326 TRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG-AKD-------VINFLRMKQDVTP  397 (625)
Q Consensus       326 ~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~-~~~-------~~~~l~~~~~~~~  397 (625)
                      +.|+.++|++||+|+++..+++.|++||++|++.+++ ++.+++.+||++++|.+. .+.       +++.+. ...++.
T Consensus       323 ~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~  400 (593)
T KOG1300|consen  323 TKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRL  400 (593)
T ss_pred             hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchH
Confidence            9999999999999999999999999999999999988 999999999999999542 222       333443 467899


Q ss_pred             hhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccchhcccCCCCCc
Q 043977          398 ENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPGEE  477 (625)
Q Consensus       398 ~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~  477 (625)
                      .||+|++++|.+.. +|+...+..+|+++.|++.++..++.|+..+|....++    .+..+|     ..+.++++. .+
T Consensus       401 ~dklR~Illy~~~~-~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~----~~~~k~-----~~~~rker~-~e  469 (593)
T KOG1300|consen  401 LDKLRLILLYIFER-KGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKD----SFLLKF-----DPPERKERV-EE  469 (593)
T ss_pred             HHHHHHHHHHHHhc-CCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccC----cccccC-----CCCcccccc-cc
Confidence            99999999999984 79999999999999999999999999999998755433    222222     222256664 78


Q ss_pred             cccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCcccCCCCCCCCCC
Q 043977          478 ETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRSRRTPSWAKPQ  557 (625)
Q Consensus       478 ~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  557 (625)
                      ..|.+|||+|.++.|+|++++++|+.+.|||+++++....|.                        ...++|+++|.+..
T Consensus       470 ~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~------------------------~~~Sar~~~~~~~k  525 (593)
T KOG1300|consen  470 QTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS------------------------AATSARYGHPLSNK  525 (593)
T ss_pred             ceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC------------------------ccccccccCccccc
Confidence            899999999999999999999999999999998776322111                        12223334555433


Q ss_pred             CCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcCCeEEEccccccCCccccC
Q 043977          558 NSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS  625 (625)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~~~iiigsT~Ii~~~~fl~  625 (625)
                      ...              ...+.++|+||||+||+||+|+|++|++++.++++|+||||+|++|.+||+
T Consensus       526 ~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~  579 (593)
T KOG1300|consen  526 TPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLD  579 (593)
T ss_pred             Ccc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHH
Confidence            221              123579999999999999999999999999999999999999999999973

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 3e-67
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 3e-67
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 2e-65
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 1e-60
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 2e-59
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 1e-53
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 4e-21
1y9j_A159 Solution Structure Of The Rat Sly1 N-Terminal Domai 5e-06
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure 
Iteration: 1

 Score =  253 bits (645), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 184/626 (29%), Positives = 329/626 (52%), Gaps = 95/626 (15%)
Query: 12  WKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMF 71
           WKVL++D+++++++S  CKM DI   G+++VED+ +RR+PLPS++AVY I PS+++V   
Sbjct: 40  WKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSL 99
Query: 72  LSDMSGREP---LYKKAYVFFSTPIPKELVNH-IKSDTSVLPRIGALREMNLEYFPIDRQ 127
           +SD   ++P    Y+ A+VFF+   P  L N  +KS  + +  I  L E+N+ + P + Q
Sbjct: 100 ISDF--KDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKV--IKTLTEINIAFLPYESQ 155
Query: 128 AFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPKASDAST 187
            +  D   + +  +  +    +  +  L  +A++IAT+ A++KE+P VRYR     +A  
Sbjct: 156 VYSLDSADSFQSFYSPHKAQMK--NPILERLAEQIATLCATLKEYPAVRYRGEYKDNAL- 212
Query: 188 TTFRDLIPSKLATAVWNCIEKYK----SIPNFPQTETCELLILDRSVDQIAPVIHEWTYD 243
                     LA  + + ++ YK    ++   P     +LLILDR  D  +PV+HE T+ 
Sbjct: 213 ----------LAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQ 262
Query: 244 AMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMT 303
           AM +DLL ++ + Y  E  +   G+   KEVLL++ D +W+ LRH HIA+ S+ +   + 
Sbjct: 263 AMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLK 320
Query: 304 NFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGK-INHIIRE 362
           +F S  +          G + + RDL ++++ +PQY +++ K S H+ +A   + H   +
Sbjct: 321 DFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHY--Q 371
Query: 363 IGLRDLGQLEQDLVFG-DAGAKDVINFLR------MKQDVTPENKLRLLMIYASVYPEKF 415
             +  L ++EQDL  G DA  + + + +R      +  +V+  +K+R++++Y  +     
Sbjct: 372 GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFL-KNGI 430
Query: 416 EGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAARKERPG 475
             +  +KL+Q A++  ED +I+ NM  L   +      TD +L+    +  +  RKER  
Sbjct: 431 TEENLNKLIQHAQIPPEDSEIITNMAHLGVPI-----VTDSTLR----RRSKPERKERIS 481
Query: 476 EEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTA 535
           E+ T+ L ++ PII++++E+  + +L    YP +              S R  A+ +TTA
Sbjct: 482 EQ-TYQLSRWTPIIKDIMEDTIEDKLDTKHYPYI--------------STRSSASFSTTA 526
Query: 536 PSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSE 595
            S  + GH         W K              N A  + R  G R+ +F++GG + +E
Sbjct: 527 VS-ARYGH---------WHK--------------NKAPGEYRS-GPRLIIFILGGVSLNE 561
Query: 596 LRACYKLT-TKLRREVVLGSTSFNDP 620
           +R  Y++T    + EV++GST    P
Sbjct: 562 MRCAYEVTQANGKWEVLIGSTHILTP 587
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain Length = 159 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query625
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-122
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 1e-110
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 1e-108
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 1e-105
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 1e-104
1y9j_A159 SEC1 family domain containing protein 1; membrane 2e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  376 bits (965), Expect = e-122
 Identities = 149/640 (23%), Positives = 304/640 (47%), Gaps = 59/640 (9%)

Query: 1   MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYF 60
            L S       WKVL++DK  ++++S   +M++I D GV++VED+ ++R+ LP    VYF
Sbjct: 15  SLRSVADGGD-WKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYF 73

Query: 61  IQPSKENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLE 120
           I+P++EN+   + D + R P Y+ A++FF +P+P  L+  + S  +V   +  L+E+N  
Sbjct: 74  IEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAV-KYVKTLKEINTL 132

Query: 121 YFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAP 180
           + P + + F  +    L + +G    +       ++ + +R++T+  +M   P+VRY + 
Sbjct: 133 FIPKEHRVFTLNEPHGLVQYYGSRSSS-----YNIDHLVRRLSTLCTTMNVAPIVRYSST 187

Query: 181 KASDASTTTFRDLIPSKLATAVWNCIEKYKSIPNFP---QTETCELLILDRSVDQIAPVI 237
                           ++A  +   I+   S             + LILDR+VD  +P++
Sbjct: 188 STPGT----------ERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLV 237

Query: 238 HEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASER 297
           HE TY A  +DLL+++ + Y        GG+ ++++V+L + D +WL++RH HI++   +
Sbjct: 238 HELTYQAAAYDLLNIENDIYSYS-TVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRK 296

Query: 298 LHDKMTNFVSKNKAAQIQQSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKIN 357
           +      F    +  Q  + S+  GE     L+++++ LPQ+ EQ+ K SLH++++  IN
Sbjct: 297 VKSSFDEFCVSARRLQGLRDSQQ-GEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAIN 355

Query: 358 HIIREIGLRDLGQLEQDLVFGDAGAKDV-------INFLRMKQDVTPENKLRLLMIYASV 410
                  +    + EQ++V  +    +        +  + + + V+ E+KLR LM+    
Sbjct: 356 MAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLMLCVLA 414

Query: 411 YPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQAAR 470
                   + + L+  A +++     + N+ +L  ++ +             ++ ++   
Sbjct: 415 K-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVAD------------RRGRKPKT 461

Query: 471 KERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAA 530
            +R   +  + L ++ PI+++L+E +  G+L    YP +    S  Q             
Sbjct: 462 MKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQ-----------PK 510

Query: 531 PATTAPSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSIL-----NHAVADLRKMGQRIFV 585
            A+ +  E   G +  +R+  +WAK + ++    S         N A         ++FV
Sbjct: 511 RASKSVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFV 570

Query: 586 FMIGGATRSELRACYKLTTKLRREVVLGSTSFNDPPEYIS 625
           F+ G  + +E+R  Y+++     EV +G+ +   P E++ 
Sbjct: 571 FINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVE 610
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query625
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.93
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=2e-104  Score=887.58  Aligned_cols=549  Identities=31%  Similarity=0.593  Sum_probs=451.4

Q ss_pred             CCCCCCCCCCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcC-CC
Q 043977            1 MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSG-RE   79 (625)
Q Consensus         1 ~~~~~~~~~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~-~~   79 (625)
                      ||+++++ +.+|||||+|+.++++||++|++++|+++||++|+.|++.|+|+|+++|||||+||.+||++|++||+. ..
T Consensus        18 ~l~~~~~-~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~~   96 (594)
T 1dn1_A           18 VIKKVKK-KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPT   96 (594)
T ss_dssp             TTGGGCC-TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGG
T ss_pred             HHhhccc-CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCCHHHHHHHHHHHhcccc
Confidence            6777753 335999999999999999999999999999999999999999999999999999999999999999974 23


Q ss_pred             CCcceEEEEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHH
Q 043977           80 PLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMA  159 (625)
Q Consensus        80 ~~y~~~~i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia  159 (625)
                      ++|++|||+|++.+|+.+++.||+. ++.+.|+++.|+++||+|+|+|+|||++|++|..+|.++..  ......++.+|
T Consensus        97 ~~Y~~y~i~Ft~~~~~~~le~La~~-~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~~--~~~~~~l~~ia  173 (594)
T 1dn1_A           97 AKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKA--QMKNPILERLA  173 (594)
T ss_dssp             CCCSEEEEEESSCCCHHHHHHHHHS-GGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGT--TSHHHHHHHHH
T ss_pred             cccceEEEEeCCCCCHHHHHHHHhc-chHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCccc--ccchHHHHHHH
Confidence            6899999999999999999999975 68899999999999999999999999999999999985321  23467899999


Q ss_pred             HHHHHHHHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCC---CCCCCeeEEEecCCCCcccc
Q 043977          160 KRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNF---PQTETCELLILDRSVDQIAP  235 (625)
Q Consensus       160 ~~L~sl~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~---~~~~~~~LiIlDR~~DliTP  235 (625)
                      ++|++||.++|.+|.|||+|+.           ..|+++|+.|++.|.++.. ++.+   +..++++|||+||++|++||
T Consensus       174 ~~L~sl~~tlg~~P~IRy~~~~-----------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTP  242 (594)
T 1dn1_A          174 EQIATLCATLKEYPAVRYRGEY-----------KDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSP  242 (594)
T ss_dssp             HHHHHHHHHHTCCCEECCCTTS-----------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTT
T ss_pred             HHHHHHHHHcCCCCEEEECCCc-----------hHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCcccccc
Confidence            9999999999999999998873           3578899999999988765 3333   22357899999999999999


Q ss_pred             ccchhchhHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhh
Q 043977          236 VIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQ  315 (625)
Q Consensus       236 Llh~~TYqaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~  315 (625)
                      |+||||||||+||+|||++|.|+++.+.  .+..++|++.|+++|++|.++||+||++|++.|.+++++|+++++..   
T Consensus       243 Llhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~---  317 (594)
T 1dn1_A          243 VLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN---  317 (594)
T ss_dssp             TSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             ccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc---
Confidence            9999999999999999999999998632  12345688999999999999999999999999999999998865321   


Q ss_pred             hcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC--------hHHHHH
Q 043977          316 QSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG--------AKDVIN  387 (625)
Q Consensus       316 ~~~~~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~--------~~~~~~  387 (625)
                          ..+..+++||++||++||+|+++++.+++|++||++|++.+++ .|++++++||++++|.+.        .+.+.+
T Consensus       318 ----~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~  392 (594)
T 1dn1_A          318 ----TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVP  392 (594)
T ss_dssp             ----------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHH
T ss_pred             ----ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHH
Confidence                0234578899999999999999999999999999999999987 899999999999998642        134566


Q ss_pred             HHhcCCCCCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccch
Q 043977          388 FLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQ  467 (625)
Q Consensus       388 ~l~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~  467 (625)
                      +|. ++.++.+|||||+|||+|++ +|++++++.++++++|++.+++.++.||+++|+...++...         .|.++
T Consensus       393 lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~~---------~k~~~  461 (594)
T 1dn1_A          393 ILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTL---------RRRSK  461 (594)
T ss_dssp             HHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCGG---------GCCCC
T ss_pred             HHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccc---------ccccc
Confidence            776 46799999999999999997 68999999999999999999999999999999765433210         12222


Q ss_pred             hcccCCCCCccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCccc
Q 043977          468 AARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRS  547 (625)
Q Consensus       468 ~~~~~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  547 (625)
                      +.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...                 +       .+..+
T Consensus       462 ~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~-----------------~-------~~~~s  516 (594)
T 1dn1_A          462 PERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASF-----------------S-------TTAVS  516 (594)
T ss_dssp             CCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----------------------------------
T ss_pred             cccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCccc-----------------c-------ccccc
Confidence            333333 5689999999999999999999999999999999976542100                 0       01123


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcC-CeEEEccccccCCccccC
Q 043977          548 RRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLR-REVVLGSTSFNDPPEYIS  625 (625)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~-~~iiigsT~Ii~~~~fl~  625 (625)
                      .|+++|++...+.+               .+.++|+||||+||+||+|+|++|++++..+ ++||||||+|+||++||+
T Consensus       517 ~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~  580 (594)
T 1dn1_A          517 ARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLD  580 (594)
T ss_dssp             ------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHH
T ss_pred             cccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHH
Confidence            34468987543221               1357899999999999999999999999864 899999999999999974
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 625
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-135
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-132
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-130
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Sly1P protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  406 bits (1045), Expect = e-135
 Identities = 110/642 (17%), Positives = 239/642 (37%), Gaps = 57/642 (8%)

Query: 5   TNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPS 64
            N     WKVLI+D  +   +S   ++ D+   G+++   + + R PLP + A+YF+ P+
Sbjct: 37  FNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPT 96

Query: 65  KENVVMFLSDMSGREPLYKKAYVFFSTPIPKELVNHIKSDTSVL---PRIGALREMNLEY 121
           KEN+ + ++D+  +   Y + Y+ F++ +P+ L+  +    S+     +I  + +  L++
Sbjct: 97  KENIDIIVNDL--KSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDF 154

Query: 122 FPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMAKRIATVFASMKEFPMVRYRAPK 181
              + + F  +   A   L         +       +A  +     ++   P++R     
Sbjct: 155 IVTEPELFSLEISNAYLTLNDPKTTE-EEITGLCANIADGLFNTVLTINSIPIIRAAKGG 213

Query: 182 ASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNFPQTETCELLILDRSVDQIAPVIHEW 240
            ++       + + +KL   V N      S +      E   L+ILDR++D  +   H W
Sbjct: 214 PAE----IIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSW 269

Query: 241 TYDAMCHDLLDMDGNKYVLEVPSKTGGQP-------EKKEVLLEDHDPVWLELRHAHIAD 293
            Y  M  D+  +  N   + + SK  G           K+  +E +D  W+E  H    +
Sbjct: 270 IYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWMENSHLPFPE 329

Query: 294 ASERLHDKMTNFVSKNKAAQIQQSSRDGGEL------STRDLQKIVQALPQYSEQVDKLS 347
           A+E +   +  +  +      +    +  +L       T  +Q++V+ LP+ + + + + 
Sbjct: 330 AAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTID 389

Query: 348 LHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAGAKDVINFLRMKQDVTPENKLRLLMIY 407
            H+ I   +   +    L    ++EQD       ++  ++ L+  +    E+KLR  ++ 
Sbjct: 390 THMNIFAALLSQLESKSLDTFFEVEQDPGSTKTRSR-FLDILKDGKTNNLEDKLRSFIVL 448

Query: 408 ASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQ 467
                     D    +    + +  D+  +  +  L   +     S       DG  +  
Sbjct: 449 YLTSTTGLPKDFVQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAF 508

Query: 468 AARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNH-PSSAEQESTSRFSVR 526
                           K    +  LI  + K    K   P  N   +  +  ++S+ ++ 
Sbjct: 509 KPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNVVDAIMDPLNSSQKNLE 568

Query: 527 KKAAPATTAPSEKKTGHSVRSRRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVF 586
              +     P   +  H+ + +R                                +  VF
Sbjct: 569 TTDSYLYIDPKITRGSHTRKPKRQS----------------------------YNKSLVF 600

Query: 587 MIGGATRSELRACYKLTTKLR---REVVLGSTSFNDPPEYIS 625
           ++GG    E +   +         ++V+ GST+   P E+++
Sbjct: 601 VVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLN 642
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query625
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-94  Score=814.69  Aligned_cols=549  Identities=30%  Similarity=0.587  Sum_probs=448.0

Q ss_pred             CCCCCCCCCCCcEEEEEeCCccchhccccCchHHHhcCCeEEecccCCCCCCCCCcEEEEecCCHHHHHHHHHHhcC-CC
Q 043977            1 MLESTNADSKSWKVLIMDKVTVKVMSHSCKMADITDRGVSLVEDLFRRRQPLPSMDAVYFIQPSKENVVMFLSDMSG-RE   79 (625)
Q Consensus         1 ~~~~~~~~~~~~KvLv~D~~~~~ils~~~~~s~L~~~gV~~i~~i~~~r~~~~~~~aIy~i~Pt~e~i~~i~~d~~~-~~   79 (625)
                      ||+++.+++ .|||||+|+.++++||++|++++|+++||++++.|++.|+|+|+++|||||+|+.+||++|++||+. ..
T Consensus        15 ~~~~v~~~~-~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~~ni~~i~~d~~~~~~   93 (589)
T d1dn1a_          15 VIKKVKKKG-EWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPT   93 (589)
T ss_dssp             TTGGGCCTT-CCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGG
T ss_pred             HHhccCCCC-ccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcCCHHHHHHHHHHhcchhh
Confidence            577776442 3999999999999999999999999999999999999999999999999999999999999999974 13


Q ss_pred             CCcceEEEEecCCCCHHHHHHHhhCCCcccccceeeEEeccceecCCCeeeecCcchhhHhhCCCCCCchhhhHHHHHHH
Q 043977           80 PLYKKAYVFFSTPIPKELVNHIKSDTSVLPRIGALREMNLEYFPIDRQAFITDHERALEELFGDNVQNTRQFDTCLNTMA  159 (625)
Q Consensus        80 ~~y~~~~i~f~~~~~~~~~e~la~~~~~~~~i~~i~e~~~df~pld~dlfsl~~~~~~~~l~~~~~~~~~~~~~~l~~ia  159 (625)
                      ++|++|||+|++++|+.+++.||++ ++++.|.+|.|+++||+|+|+|+|||++|++|..+|.+++.  ......++++|
T Consensus        94 ~~Y~~~~i~F~~~~~~~~le~La~~-~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~~~--~~~~~~l~~ia  170 (589)
T d1dn1a_          94 AKYRAAHVFFTDSCPDALFNELVKS-RAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKA--QMKNPILERLA  170 (589)
T ss_dssp             CCCSEEEEEESSCCCHHHHHHHHHS-GGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGT--TSHHHHHHHHH
T ss_pred             cccCeEEEEECCCCCHHHHHHHHhc-CccccCCeEEEEecceeeCCCCEEEecCCchHHHhcCCccc--chhhHHHHHHH
Confidence            5799999999999999999999976 67889989999999999999999999999999999985432  33467899999


Q ss_pred             HHHHHHHHHcCCCcEEEEcCCCCCCCccccccchhHHHHHHHHHHHHHHhcc-CCCC---CCCCCeeEEEecCCCCcccc
Q 043977          160 KRIATVFASMKEFPMVRYRAPKASDASTTTFRDLIPSKLATAVWNCIEKYKS-IPNF---PQTETCELLILDRSVDQIAP  235 (625)
Q Consensus       160 ~~L~sl~~~lg~~P~I~~~~~~~~~~~~~~~~~~v~~~la~~l~~~l~~~~~-~~~~---~~~~~~~LiIlDR~~DliTP  235 (625)
                      ++|+++|.++|.+|.|||+|+.           ..|+.+|+.+++.+..+.+ ++.+   +..++++|||+||++|++||
T Consensus       171 ~~L~sl~~~lg~~P~Ir~~~~~-----------~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliTP  239 (589)
T d1dn1a_         171 EQIATLCATLKEYPAVRYRGEY-----------KDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSP  239 (589)
T ss_dssp             HHHHHHHHHHTCCCEECCCTTS-----------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTT
T ss_pred             HHHHHHHHHhCCCCeEEEcCCc-----------hHHHHHHHHHHHHHHHHHhcCcccCCCcccCCceEEEeccCcccccc
Confidence            9999999999999999999873           3678899999998888766 3322   23347899999999999999


Q ss_pred             ccchhchhHHhhhhccCCCCeEEEeecCCCCCCccceEEecCCCChHHHHhhcchHHHHHHHHHHHHHHHHHHhHHHHhh
Q 043977          236 VIHEWTYDAMCHDLLDMDGNKYVLEVPSKTGGQPEKKEVLLEDHDPVWLELRHAHIADASERLHDKMTNFVSKNKAAQIQ  315 (625)
Q Consensus       236 Llh~~TYqaLi~dl~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~  315 (625)
                      |+|||||||||||+|||++|.|+++.+..  +..+.+++.++..|++|.++||+||++|++.|.+++++++++++.  . 
T Consensus       240 Llh~~TYq~li~e~~gI~~n~v~i~~~~~--~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~--~-  314 (589)
T d1dn1a_         240 VLHELTFQAMSYDLLPIENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRM--N-  314 (589)
T ss_dssp             TSCCCBHHHHHHHHSCCBTTEEEEEECSS--SSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             ccccccHHHHHHHHhcccCCeEEecCCCC--CcccceEeecCCCcHHHHHhhcccHHHHHHHHHHHHHHHHHHhhh--h-
Confidence            99999999999999999999999986422  234467889999999999999999999999999999999876432  1 


Q ss_pred             hcccCCCCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHhhhcCCCC--------hHHHHH
Q 043977          316 QSSRDGGELSTRDLQKIVQALPQYSEQVDKLSLHVEIAGKINHIIREIGLRDLGQLEQDLVFGDAG--------AKDVIN  387 (625)
Q Consensus       316 ~~~~~~~~~s~~el~~~v~~Lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~g~~~--------~~~~~~  387 (625)
                          ..+..+++||+++|+++|+++++++.++.|++|+++|++.++ ++|.+++++||++++|.+.        ...+++
T Consensus       315 ----~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~i~~  389 (589)
T d1dn1a_         315 ----TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVP  389 (589)
T ss_dssp             ----------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBCSSCCBCCCTHHHHHH
T ss_pred             ----ccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHH
Confidence                123457788999999999999999999999999999999995 7899999999999987542        245677


Q ss_pred             HHhcCCCCCchhHHHHHHHHHHhCCCCCChHHHHHHHHHhCCChhHHHHHHHHHhhcccccCCCCCCcccccccccccch
Q 043977          388 FLRMKQDVTPENKLRLLMIYASVYPEKFEGDKASKLMQLARLSSEDMKIVNNMRLLAGSLNSKKSSTDFSLKFDGQKTKQ  467 (625)
Q Consensus       388 ~l~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~nL~~lg~~~~~~~~~~~~~~~f~~~k~~~  467 (625)
                      ++. +..++.+|+|||+|||++++ +|+++++++++++.+|++.+.+.++.+|+.+|....+...   ..      +...
T Consensus       390 ~l~-~~~~~~~d~LRL~~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~---~~------~~~~  458 (589)
T d1dn1a_         390 ILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST---LR------RRSK  458 (589)
T ss_dssp             HHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG---GG------CCCC
T ss_pred             HHh-cCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCChHHHHHHHHHHHhCCccccCch---hh------cccc
Confidence            776 47889999999999999998 6999999999999999998999999999999976543321   00      1111


Q ss_pred             hcccCCCCCccccccccccHHHHHHHHHHHcCCCCCCCCCcccCCCCccccccccccccccCCCCCCCCCccccCCCccc
Q 043977          468 AARKERPGEEETWALFKFYPIIEELIENLCKGELPKSDYPCMNHPSSAEQESTSRFSVRKKAAPATTAPSEKKTGHSVRS  547 (625)
Q Consensus       468 ~~~~~~~~~~~~y~~s~y~Pl~~~lie~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  547 (625)
                      ...+. .+.+.+|+++||+|+++++++.++++.++.+.||++........+.                        +...
T Consensus       459 ~~~~~-~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~~~~p~~~~~~~~~~~~------------------------~~~~  513 (589)
T d1dn1a_         459 PERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFST------------------------TAVS  513 (589)
T ss_dssp             CCCCC-CCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----------------------------------
T ss_pred             ccccc-CCcccccccccchHHHHHHHHHHHhCCCCcccCcccCCCccccccc------------------------cccc
Confidence            11111 3567889999999999999999999999999999987543211100                        0111


Q ss_pred             CCCCCCCCCCCCCCCCCccchhhhhhhhhhcCCCeEEEEEEcCCCHHHHHHHHHHHhhcC-CeEEEccccccCCccccC
Q 043977          548 RRTPSWAKPQNSDDGYSSDSILNHAVADLRKMGQRIFVFMIGGATRSELRACYKLTTKLR-REVVLGSTSFNDPPEYIS  625 (625)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiVf~iGGvTy~Ei~al~~L~~~~~-~~iiigsT~Ii~~~~fl~  625 (625)
                      .+.+.|.++..+.               ....++++||||||||||+|+++||+|+++.+ ++|+||||+|+||++|++
T Consensus       514 ~~~~~~~~~~~~~---------------~~~~~~~viVF~vGGvTy~E~~~l~~l~~~~~~~~iiiGsT~iln~~~fl~  577 (589)
T d1dn1a_         514 ARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLD  577 (589)
T ss_dssp             ------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHH
T ss_pred             cccccccccCCCC---------------cCCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCceEEEEeCCEecHHHHHH
Confidence            1113444332211               12357899999999999999999999998876 699999999999999974
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure