Citrus Sinensis ID: 043978
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 683 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.837 | 0.675 | 0.336 | 7e-72 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.855 | 0.521 | 0.293 | 1e-42 | |
| Q9FZ59 | 1088 | Leucine-rich repeat recep | no | no | 0.806 | 0.506 | 0.286 | 1e-41 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.733 | 0.455 | 0.312 | 2e-40 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.815 | 0.444 | 0.302 | 2e-40 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.803 | 0.498 | 0.293 | 6e-39 | |
| Q8VZG8 | 1045 | Probable LRR receptor-lik | no | no | 0.819 | 0.535 | 0.276 | 7e-39 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.806 | 0.469 | 0.282 | 1e-38 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.843 | 0.461 | 0.297 | 2e-38 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.743 | 0.529 | 0.316 | 2e-38 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 272 bits (695), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 225/668 (33%), Positives = 328/668 (49%), Gaps = 96/668 (14%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
C++ +G VI LD+ + +L + NS+LF+L +L+ L+L N G I G L
Sbjct: 79 CNDKSGQVISLDIPNT--FLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSH 135
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGST 121
LT +N F+ F G +P+ I +L++L HL L+ VLT E
Sbjct: 136 LTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGE---------------------- 173
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
P SL NLS + +L+L R+ G PD I L LR L L N +L G +P
Sbjct: 174 -----IPSSLGNLSR-LVNLELFSNRLVGKIPDSIGDLKQLRNLSLASN-NLIGEIPSSL 226
Query: 182 WS-SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
+ S L L L+ + GE+P SIGNL+ L + + G+IP S NL+K + + +
Sbjct: 227 GNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLS 286
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID--G 298
SN+ T P +S L D+ NS G P L +PSL S+ L N+ TGPI+
Sbjct: 287 SNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFAN 346
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
S L+++ L +N++HG IP S+ S+L NL+ LD+S+NN +G
Sbjct: 347 TSSSTKLQDLILGRNRLHGPIPESI------------SRLLNLEELDISHNNF-----TG 389
Query: 359 NIDIKYS-LPSLLKLSFSNCNVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416
I S L +LL L S N+ E P+ L W+ L+
Sbjct: 390 AIPPTISKLVNLLHLDLSKNNLEGEVPACL-----------------WR------LNTMV 426
Query: 417 LTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYL 476
L+H + ++N Q L+ E +++N G IP IC LSSL +L
Sbjct: 427 LSHNSFSSFENTS---------QEEALI-----EELDLNSNSFQGPIPYMICKLSSLGFL 472
Query: 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSL 536
LS+N SG+IP C+ NF+ + L+L +N+ G + D F A+ + S D++ N+ EG
Sbjct: 473 DLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKF 532
Query: 537 PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQAL 596
P+SL C LE+VNV +N I D FP WL SLP L +L LRSN+FYGPL + FQ+L
Sbjct: 533 PKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSL 592
Query: 597 RIIDLSRNEFKDFLPRRNFTSMEAM----KNVDEQATRLQYMGHAYYDESVTVAMKGHDF 652
RIID+S N F LP F++ + M + +D+ T +YY E + + KG D
Sbjct: 593 RIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHE-MEMVNKGVDM 651
Query: 653 QLYMLNLD 660
+ D
Sbjct: 652 SFERIRRD 659
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 197/672 (29%), Positives = 293/672 (43%), Gaps = 88/672 (13%)
Query: 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
++ LNL G+ F L L Y++ S + G +P + +LSKL + LS L
Sbjct: 79 IEELNLTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHL 138
Query: 97 TIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQI 156
T E NL L++L+L L+ + P L N+ S MTDL LS ++ G+ P +
Sbjct: 139 TGE---ISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMES-MTDLALSQNKLTGSIPSSL 194
Query: 157 FLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDI 215
L NL VLYL N +LTG +P + + +L LS + +G IP ++GNL L + +
Sbjct: 195 GNLKNLMVLYLYEN-YLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYL 253
Query: 216 TYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275
G IP GN+ T + + N LTG +P + L LT L LF N L G +P
Sbjct: 254 YENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPK 313
Query: 276 LFTLPSLVSVNLAWNKLTGPI--------------------DGFQSP-----NSLEEVHL 310
L + S++ + L+ NKLTG I G P S+ ++ L
Sbjct: 314 LGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQL 373
Query: 311 EKNQIHGTIPSSLFQL-------------CGTIRFDQFSKLKNLQFLDLSNNNLL----- 352
N++ G+IPSS L G I + ++++ LDLS N L
Sbjct: 374 NNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIP-QELGNMESMINLDLSQNKLTGSVPD 432
Query: 353 ---SFTS-----------SGNIDIKYSLPSLLKLSFSNCN--VSEFPSFLRNSEKIH--- 393
+FT SG I + S L + N FP + K+
Sbjct: 433 SFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNIS 492
Query: 394 -------GRISKHDSKGWKSLIDLD-LSNNFLTHI--ALHPWKNIRTLDLRNNKIQGSI- 442
G I K + KSLI L N F I A + ++ +D +NK G I
Sbjct: 493 LDYNHLEGPIPK-SLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEIS 551
Query: 443 --LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLIT 500
P ++SNN ++G IP I +++ L L LS NNL G +P +GN T L
Sbjct: 552 SNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNL-TNLSR 610
Query: 501 LHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTF 560
L L N L G + +N++S DL+ N F +P++ +KL +N+ N + +
Sbjct: 611 LRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSI 670
Query: 561 PCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA 620
P L L L L L N+ G + ++ S Q+L +DLS N +P F M A
Sbjct: 671 P-RLSKLTQLTQLDLSHNQLDGEIPSQLS--SLQSLDKLDLSHNNLSGLIP-TTFEGMIA 726
Query: 621 MKNVDEQATRLQ 632
+ NVD +L+
Sbjct: 727 LTNVDISNNKLE 738
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 183/639 (28%), Positives = 299/639 (46%), Gaps = 88/639 (13%)
Query: 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
+++LNL+ + G ++ E G LK L L+ S ++F GL+PS + + + L +L LS
Sbjct: 78 VETLNLSASGLSG-QLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDF 136
Query: 97 TIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLL-------------NLSSTMTDL-- 141
+ E D+ S L L+ L+L NLS + P S+ NLS T+ +L
Sbjct: 137 SGE--VPDIFGS-LQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLG 193
Query: 142 --------DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLS 192
L+ ++ G+ P ++LL NL L++ N L G L + L LDLS
Sbjct: 194 NCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNN-SLGGRLHFGSSNCKKLVSLDLS 252
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV 252
+DF G +P IGN L ++ + CN G+IP+S G L K + I + N L+G +P +
Sbjct: 253 FNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQEL 312
Query: 253 SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-GFQSPNSLEEVHLE 311
L L L N LQG++P L L L S+ L +NKL+G I G SL ++ +
Sbjct: 313 GNCSSLETLKLNDNQLQGEIPPALSKLKKLQSLELFFNKLSGEIPIGIWKIQSLTQMLVY 372
Query: 312 KNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSL----- 366
N + G +P + ++LK+L+ L L NN G+I + L
Sbjct: 373 NNTLTGELPV------------EVTQLKHLKKLTLFNNGFY-----GDIPMSLGLNRSLE 415
Query: 367 -PSLLKLSFSN------CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419
LL F+ C+ + F+ S ++HG+I + K+L + L +N L+
Sbjct: 416 EVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPA-SIRQCKTLERVRLEDNKLSG 474
Query: 420 I--ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL---VSNNKLSGQIPPYICSLSSLK 474
+ ++ ++L +N +GSI S + L +S NKL+G IPP + +L SL
Sbjct: 475 VLPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLG 534
Query: 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEG 534
L+LSHN L G +P L +L+ + +NSL G I +F + ++ + L+ N F G
Sbjct: 535 LLNLSHNYLEGPLPSQLSG-CARLLYFDVGSNSLNGSIPSSFRSWKSLSTLVLSDNNFLG 593
Query: 535 SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKI-LILRSNRFYGPLCKSITTF-- 591
++P+ LA+ +L + + N P +G L L+ L L +N F G + ++
Sbjct: 594 AIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALIN 653
Query: 592 -------------------SFQALRIIDLSRNEFKDFLP 611
S ++L +D+S N+F +P
Sbjct: 654 LERLNISNNKLTGPLSVLQSLKSLNQVDVSYNQFTGPIP 692
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Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 172/551 (31%), Positives = 260/551 (47%), Gaps = 50/551 (9%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
LS LQ L + NN G I P +L++L + + F G++PSEIS L LGL+
Sbjct: 162 LSSLQELVIYSNNLTGV-IPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAE 220
Query: 94 RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP 153
+L + + L L+ L L LS P S+ N+S + L L G+ P
Sbjct: 221 NLL---EGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISR-LEVLALHENYFTGSIP 276
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPK-CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLET 212
+I L ++ LYL N LTG +P+ E+D S + +G IP G++L L+
Sbjct: 277 REIGKLTKMKRLYLYTN-QLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKL 335
Query: 213 VDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272
+ + +G IP G L+ ++ + N L G +P + L YL +L LF N L+GK+
Sbjct: 336 LHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLPYLVDLQLFDNQLEGKI 395
Query: 273 PSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLF------- 324
P + + ++++ N L+GPI F +L + L N++ G IP L
Sbjct: 396 PPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTK 455
Query: 325 ------QLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS-LPSLLKLSFSNC 377
QL G++ + F+ L+NL L+L N L SGNI L +L +L +N
Sbjct: 456 LMLGDNQLTGSLPIELFN-LQNLTALELHQNWL-----SGNISADLGKLKNLERLRLANN 509
Query: 378 NVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-HI--ALHPWKNIRTLDL 433
N + E P + N KI G ++S+N LT HI L I+ LDL
Sbjct: 510 NFTGEIPPEIGNLTKIVG---------------FNISSNQLTGHIPKELGSCVTIQRLDL 554
Query: 434 RNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC 490
NK G I L E+ +S+N+L+G+IP L+ L L L N LS IP
Sbjct: 555 SGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVE 614
Query: 491 LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550
LG T+ I+L++ +N+L G I D+ N ++ LN NK G +P S+ + L + N
Sbjct: 615 LGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICN 674
Query: 551 VGNNMINDTFP 561
+ NN + T P
Sbjct: 675 ISNNNLVGTVP 685
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 188/621 (30%), Positives = 281/621 (45%), Gaps = 64/621 (10%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTH 88
+ L RL +LQ+LNL N+F G I + G L + YLN + GL+P ++ L+ L
Sbjct: 234 AELNRLKNLQTLNLGDNSFSG-EIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQT 292
Query: 89 LGLSCRVLT---------IEQRTFDLLA-------------SNLTKLSLLHLGSTNLSLI 126
L LS LT + Q F +LA SN T L L L T LS
Sbjct: 293 LDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGE 352
Query: 127 KPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWS-SP 185
P + N S + LDLS + G PD +F L L LYL N L G L + +
Sbjct: 353 IPAEISNCQS-LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNN-SLEGTLSSSISNLTN 410
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
L+E L ++ G++P IG L LE + + F G +P GN ++ EI + N L+
Sbjct: 411 LQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLS 470
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNS 304
G++P + L LT L L N L G +P+ L + ++LA N+L+G I F +
Sbjct: 471 GEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA 530
Query: 305 LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDL-SNNNLLSFTSSGN---I 360
LE + N + G +P SL L R + S N L +++ LSF + N
Sbjct: 531 LELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEG 590
Query: 361 DIKYSLPSLLKLSFSNCNVSEFP-----SFLRNSEKIHGRISKHDSKG--------WKSL 407
DI L L ++F +F + SE IS++ G K L
Sbjct: 591 DIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKL 650
Query: 408 IDLDLSNNFLTHIALHPWKN----IRTLDLRNNKIQGSILVPPPSTEVFLVSN------- 456
+DL+NN+L+ + + W + L L +NK GS+ TE+F ++N
Sbjct: 651 THIDLNNNYLSGV-IPTWLGKLPLLGELKLSSNKFVGSL-----PTEIFSLTNILTLFLD 704
Query: 457 -NKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDT 515
N L+G IP I +L +L L+L N LSG +P +G ++L L L N+L G I
Sbjct: 705 GNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKL-SKLFELRLSRNALTGEIPVE 763
Query: 516 FENASNIQS-FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574
++QS DL+ N F G +P +++ KLE +++ +N + P +G + L L
Sbjct: 764 IGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLN 823
Query: 575 LRSNRFYGPLCKSITTFSFQA 595
L N G L K + + A
Sbjct: 824 LSYNNLEGKLKKQFSRWQADA 844
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 188/641 (29%), Positives = 285/641 (44%), Gaps = 92/641 (14%)
Query: 1 ICDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLK 60
+C N + + L L+ S L G + + ++ L HL+ L+L++N G +I E G
Sbjct: 65 MCSNYSSDPEVLSLNLSSMVLSGKL--SPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCS 121
Query: 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGS 120
L L + + F G +P EI L L +L + ++ + + NL LS L S
Sbjct: 122 SLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRIS---GSLPVEIGNLLSLSQLVTYS 178
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK- 179
N+S P S+ NL +T I G+ P +I +L +L L N L+G LPK
Sbjct: 179 NNISGQLPRSIGNLKR-LTSFRAGQNMISGSLPSEIGGCESLVMLGLAQN-QLSGELPKE 236
Query: 180 CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETV----------------DITYCNFM-- 221
L ++ L ++FSG IP I N LET+ D+ F+
Sbjct: 237 IGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYL 296
Query: 222 ------GSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275
G+IP GNLS A EI F+ N LTG++P + + L L LF N L G +P
Sbjct: 297 YRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVE 356
Query: 276 LFTLPSLVSVNLAWNKLTGPID-GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQ 334
L TL +L ++L+ N LTGPI GFQ L + L +N + GTIP L
Sbjct: 357 LSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKL----------- 405
Query: 335 FSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHG 394
+L LD+S+N+L SG I PS+L
Sbjct: 406 -GWYSDLWVLDMSDNHL-----SGRI----------------------PSYL-------- 429
Query: 395 RISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQG---SILVPPPSTEV 451
H + +L +LS N T I K + L L N + G S L +
Sbjct: 430 --CLHSNMIILNLGTNNLSGNIPTGIT--TCKTLVQLRLARNNLVGRFPSNLCKQVNVTA 485
Query: 452 FLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGH 511
+ N+ G IP + + S+L+ L L+ N +G +P +G +QL TL++ +N L G
Sbjct: 486 IELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGE 544
Query: 512 IHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLK 571
+ N +Q D+ CN F G+LP + +LE++ + NN ++ T P LG+L L
Sbjct: 545 VPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLT 604
Query: 572 ILILRSNRFYGPLCKSITTFSFQALRI-IDLSRNEFKDFLP 611
L + N F G + + + S L+I ++LS N+ +P
Sbjct: 605 ELQMGGNLFNGSIPRELG--SLTGLQIALNLSYNKLTGEIP 643
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 168/607 (27%), Positives = 266/607 (43%), Gaps = 47/607 (7%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
L + LNL G+ F L LT+++ S + F G + SKL + LS
Sbjct: 92 LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSI 151
Query: 94 RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP 153
L E +L+ L LHL L+ P + L+ +T++ + + G P
Sbjct: 152 NQLVGE---IPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTK-VTEIAIYDNLLTGPIP 207
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP-LRELDLSLSDFSGEIPYSIGNLLFLET 212
L L LYL N L+G +P + P LREL L ++ +G+IP S GNL +
Sbjct: 208 SSFGNLTKLVNLYLFIN-SLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTL 266
Query: 213 VDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272
+++ G IP GN++ + +N LTG +P + + L L L+ N L G +
Sbjct: 267 LNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSI 326
Query: 273 PSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
P L + S++ + ++ NKLTGP+ D F +LE + L NQ+ G IP +
Sbjct: 327 PPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGI-------- 378
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEK 391
+ L L L NN F LP + C + + +
Sbjct: 379 ----ANSTELTVLQLDTNNFTGF-----------LPDTI------CRGGKLENLTLDDNH 417
Query: 392 IHGRISKHDSKGWKSLIDLDLS-NNFLTHI--ALHPWKNIRTLDLRNNKIQGSILVPPPS 448
G + K + KSLI + N+F I A + + +DL NN G +
Sbjct: 418 FEGPVPK-SLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQ 476
Query: 449 TE---VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
++ F++SNN ++G IPP I +++ L L LS N ++G +P + N ++ L L
Sbjct: 477 SQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNI-NRISKLQLNG 535
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565
N L G I +N++ DL+ N+F +P +L +L +N+ N ++ T P L
Sbjct: 536 NRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLT 595
Query: 566 SLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
L L++L L N+ G + S Q L +DLS N +P +F M A+ +VD
Sbjct: 596 KLSQLQMLDLSYNQLDGEISSQFR--SLQNLERLDLSHNNLSGQIP-PSFKDMLALTHVD 652
Query: 626 EQATRLQ 632
LQ
Sbjct: 653 VSHNNLQ 659
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 178/630 (28%), Positives = 279/630 (44%), Gaps = 79/630 (12%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD+ TG+V+ + L L G + + + L++LQ L+L N+F G +I E G+L E
Sbjct: 68 CDS-TGHVVSVSLLEK--QLEGVL--SPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTE 121
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGST 121
L L + F G +PS I L + +L L +L+ G
Sbjct: 122 LNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLS---------------------GDV 160
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KC 180
+ K +S++ + + G P+ + L +L++ GN HLTG +P
Sbjct: 161 PEEICK-------TSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGN-HLTGSIPVSI 212
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
+ L +LDLS + +G+IP GNLL L+++ +T G IP GN S ++
Sbjct: 213 GTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELY 272
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID--- 297
N LTG++P + L+ L L ++ N L +PS LF L L + L+ N L GPI
Sbjct: 273 DNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEI 332
Query: 298 GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSS 357
GF SLE + L N G P S+ + L+NL L + NN
Sbjct: 333 GFLE--SLEVLTLHSNNFTGEFPQSI------------TNLRNLTVLTVGFNN------- 371
Query: 358 GNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417
I LP+ L L + N+S + L + I IS + G K LDLS+N +
Sbjct: 372 ----ISGELPADLGLLTNLRNLSAHDNLL--TGPIPSSIS--NCTGLKL---LDLSHNQM 420
Query: 418 THIALHPWK--NIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSS 472
T + N+ + + N G I + + E V++N L+G + P I L
Sbjct: 421 TGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQK 480
Query: 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKF 532
L+ L +S+N+L+G IP +GN L L+L +N G I N + +Q + N
Sbjct: 481 LRILQVSYNSLTGPIPREIGNL-KDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDL 539
Query: 533 EGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFS 592
EG +P + L V+++ NN + P L L L L+ N+F G + S+ + S
Sbjct: 540 EGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLS 599
Query: 593 FQALRIIDLSRNEFKDFLPRRNFTSMEAMK 622
L D+S N +P S++ M+
Sbjct: 600 L--LNTFDISDNLLTGTIPGELLASLKNMQ 627
|
Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 186/626 (29%), Positives = 293/626 (46%), Gaps = 50/626 (7%)
Query: 7 GNVIGLDLHG--SCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTY 64
GN++ L + SC L G I S L RL +QSL L +N+L I E G +LT
Sbjct: 164 GNLVNLQMLALASCR-LTGPIP--SQLGRLVRVQSLILQ-DNYLEGPIPAELGNCSDLTV 219
Query: 65 LNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLS 124
+ + G +P+E+ L L L L+ LT E + +++L L L + L
Sbjct: 220 FTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPS---QLGEMSQLQYLSLMANQLQ 276
Query: 125 LIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK--CNW 182
+ P SL +L + T LDLS + G P++ + + L L L N HL+G LPK C+
Sbjct: 277 GLIPKSLADLGNLQT-LDLSANNLTGEIPEEFWNMSQLLDLVLANN-HLSGSLPKSICSN 334
Query: 183 SSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASN 242
++ L +L LS + SGEIP + L+ +D++ + GSIP + L + T++ +N
Sbjct: 335 NTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNN 394
Query: 243 HLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQS 301
L G L +S L L L L+ N+L+GK+P + L L + L N+ +G I +
Sbjct: 395 TLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN 454
Query: 302 PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSF--TSSGN 359
SL+ + + N G IP S+ +LK L L L N L+ S GN
Sbjct: 455 CTSLKMIDMFGNHFEGEIPPSI------------GRLKELNLLHLRQNELVGGLPASLGN 502
Query: 360 IDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKG--------WKSLIDLD 411
+ ++ L S S F FL+ E++ + + +G ++L ++
Sbjct: 503 CH-QLNILDLADNQLSGSIPSSF-GFLKGLEQL--MLYNNSLQGNLPDSLISLRNLTRIN 558
Query: 412 LSNNFLTHIALHPW---KNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPP 465
LS+N L +HP + + D+ NN + I L + + + N+L+G+IP
Sbjct: 559 LSHNRLNG-TIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPW 617
Query: 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525
+ + L L +S N L+GTIP L +L + L NN L G I S +
Sbjct: 618 TLGKIRELSLLDMSSNALTGTIPLQL-VLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGEL 676
Query: 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585
L+ N+F SLP L C KL V+++ N +N + P +G+L L +L L N+F G L
Sbjct: 677 KLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLP 736
Query: 586 KSITTFSFQALRIIDLSRNEFKDFLP 611
+++ S L + LSRN +P
Sbjct: 737 QAMGKLS--KLYELRLSRNSLTGEIP 760
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 183/578 (31%), Positives = 267/578 (46%), Gaps = 70/578 (12%)
Query: 1 ICDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLK 60
+C+N++ V+ LDL G + G I +T FRL LQ++NL+ NN G F
Sbjct: 67 VCNNIS-RVVSLDLSGKN--MSGQILTAAT-FRLPFLQTINLSNNNLSGPIPHDIFTTSS 122
Query: 61 -ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLG 119
L YLN S +NF G +P L L L LS + T E + SNL +L LG
Sbjct: 123 PSLRYLNLSNNNFSGSIPR--GFLPNLYTLDLSNNMFTGEIYNDIGVFSNL---RVLDLG 177
Query: 120 STNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK 179
L+ P L NLS + L L+ ++ G P ++ + NL+ +YL GY
Sbjct: 178 GNVLTGHVPGYLGNLSR-LEFLTLASNQLTGGVPVELGKMKNLKWIYL-------GY--- 226
Query: 180 CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILF 239
++ SGEIPY IG L L +D+ Y N G IP S G+L K +
Sbjct: 227 --------------NNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIPPSLGDLKKLEYMFL 272
Query: 240 ASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DG 298
N L+GQ+P + L L +LD NSL G++P + + SL ++L N LTG I +G
Sbjct: 273 YQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNLTGKIPEG 332
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL-----S 353
S L+ + L N+ G IP++L K NL LDLS NNL +
Sbjct: 333 VTSLPRLKVLQLWSNRFSGGIPANL------------GKHNNLTVLDLSTNNLTGKLPDT 380
Query: 354 FTSSGN----IDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLID 409
SG+ I SL S + S C E N G++ + +K L++
Sbjct: 381 LCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNG--FSGKLPRGFTK--LQLVN 436
Query: 410 -LDLSNNFLT-HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL----VSNNKLSGQI 463
LDLSNN L +I + LDL NK G + P S L +S NK+SG +
Sbjct: 437 FLDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGEL--PDFSRSKRLKKLDLSRNKISGVV 494
Query: 464 PPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523
P + + + L LS N ++G IP L + L+ L L +N+ G I +F +
Sbjct: 495 PQGLMTFPEIMDLDLSENEITGVIPRELSS-CKNLVNLDLSHNNFTGEIPSSFAEFQVLS 553
Query: 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561
DL+CN+ G +P++L L VN+ +N+++ + P
Sbjct: 554 DLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLP 591
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 683 | ||||||
| 225462116 | 1001 | PREDICTED: receptor-like protein 12-like | 0.918 | 0.626 | 0.421 | 1e-129 | |
| 225459979 | 979 | PREDICTED: receptor-like protein 12-like | 0.923 | 0.644 | 0.425 | 1e-128 | |
| 359493546 | 985 | PREDICTED: LRR receptor-like serine/thre | 0.922 | 0.639 | 0.432 | 1e-127 | |
| 225455498 | 980 | PREDICTED: receptor-like protein 12-like | 0.923 | 0.643 | 0.433 | 1e-125 | |
| 147793123 | 951 | hypothetical protein VITISV_032542 [Viti | 0.923 | 0.663 | 0.432 | 1e-124 | |
| 359493544 | 978 | PREDICTED: receptor-like protein 12-like | 0.915 | 0.639 | 0.434 | 1e-123 | |
| 224116970 | 921 | predicted protein [Populus trichocarpa] | 0.929 | 0.689 | 0.416 | 1e-117 | |
| 359485824 | 973 | PREDICTED: receptor-like protein 12-like | 0.945 | 0.663 | 0.420 | 1e-115 | |
| 357493403 | 1015 | Receptor-like protein kinase [Medicago t | 0.926 | 0.623 | 0.400 | 1e-114 | |
| 147773180 | 870 | hypothetical protein VITISV_024119 [Viti | 0.877 | 0.688 | 0.411 | 1e-113 |
| >gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 318/754 (42%), Positives = 421/754 (55%), Gaps = 127/754 (16%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
C+ VTG +IGLDL SCS L GTID NS+LF L HL+ LNLAFN+F S IS +FG+ +
Sbjct: 80 CNRVTGLIIGLDL--SCSGLYGTIDSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRR 137
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRV-LTIEQRTFDLLASNLTKLSLLHLGS 120
+T+LN SFS F G++ EISHLS L L LS L +E +F LA NLTKL LHL
Sbjct: 138 MTHLNLSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALARNLTKLQKLHLRG 197
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
N+S I P SLLNLSS + +DLS ++ G FPD LPNL+VL L GN L+G PK
Sbjct: 198 INVSSILPISLLNLSSLRS-MDLSSCQLYGRFPDDDLQLPNLKVLKLKGNHDLSGNFPKF 256
Query: 181 NWSSP------------------------LRELDLSLSDFSGEIPYSIGNLLFLETVDIT 216
N S+ L LDLS + FSGE+P SIG+L LE++D++
Sbjct: 257 NESNSMLLLDLSSTNFSGELPSSIGILKSLESLDLSSTKFSGELPSSIGSLKSLESLDLS 316
Query: 217 YCNFMGSIPTSTGNLSKAT----------------------------------------- 235
+CNF GSIP+ GNL++ T
Sbjct: 317 HCNFSGSIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIVLDLSSNSFRGQFIASL 376
Query: 236 ----EILF---ASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288
E+ F ++N+L G +P HV L L+++ L N L G +PSWLF+LPSL+ ++L+
Sbjct: 377 DNLTELSFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTIPSWLFSLPSLIRLDLS 436
Query: 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLC-------------GTIRFDQF 335
NKL G ID FQSP SLE + L N++ G +PSS+F+L G + D F
Sbjct: 437 HNKLNGHIDEFQSP-SLESIDLSSNELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMF 495
Query: 336 SKLKNLQFLDLSNNNL-LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSE---- 390
L+NL +LDLS N L LS S N +LP L L S+CN+SEFP FL + E
Sbjct: 496 MNLENLVYLDLSYNILTLSNYSHSNC----ALPFLETLLLSSCNISEFPRFLCSQEVLEF 551
Query: 391 ------KIHGRISKHD-SKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSIL 443
KI+G++ K + G ++L +LS N LT PWKN+ LDL +N +QG
Sbjct: 552 LDLSNNKIYGQLPKWAWNMGTETLSYFNLSQNLLTRFERFPWKNMLFLDLHSNLLQG--- 608
Query: 444 VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHL 503
+P IC +S + L S+NNLSG IP CLGNF+ L L L
Sbjct: 609 ------------------PLPSLICEMSYISVLDFSNNNLSGLIPQCLGNFSESLSVLDL 650
Query: 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563
+ N L G+I +TF + I++ N N+ EG LPRSL C +L+V+++GNN INDTFP W
Sbjct: 651 RMNQLHGNIPETFSKGNFIRNLGFNGNQLEGPLPRSLINCRRLQVLDLGNNRINDTFPYW 710
Query: 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKN 623
L +LP L++LILRSNRF+G + S F F LRI+DLSRN+F LP + +AM N
Sbjct: 711 LETLPELQVLILRSNRFHGHISGSNFQFPFPKLRIMDLSRNDFSGSLPEMYLKNFKAMMN 770
Query: 624 VDEQATRLQYMGHAYYDESVTVAMKGHDFQLYML 657
V E +L+YMG YY +S+ +KG DF+ +L
Sbjct: 771 VTEDKMKLKYMGEYYYRDSIMGTIKGFDFEFVIL 804
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 305/716 (42%), Positives = 410/716 (57%), Gaps = 85/716 (11%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD VTG+VIGLDL SCSWL GTI NSTLF HL+ LNLAFN+F GS +S FGR
Sbjct: 85 CDRVTGHVIGLDL--SCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSS 142
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGST 121
LT+LN S S F GL+ EISHL+ L L LS F+ L NLTKL LHLG
Sbjct: 143 LTHLNLSESLFSGLISPEISHLANLVSLDLSGNGAEFAPHGFNSLLLNLTKLQKLHLGGI 202
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
++S + P SLLN SS ++ LDLS + G+F D LP L VL L GN L G P+ +
Sbjct: 203 SISSVFPNSLLNQSSLIS-LDLSDCGLHGSFHDHDIHLPKLEVLNLWGNNALNGNFPRFS 261
Query: 182 WSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFAS 241
++ L EL L+ ++FSGE+P SIGNL L+T+D++ C F+GSIPTS NL + T +
Sbjct: 262 ENNSLLELVLASTNFSGELPASIGNLKSLKTLDLSICQFLGSIPTSLENLKQITSLNLIG 321
Query: 242 NHLTGQLPH------------------------HVSGLLYLTNLDLFGNSLQG------- 270
NH +G++P+ + L L LD N L+G
Sbjct: 322 NHFSGKIPNIFNNLRNLISLGLSNNNFSGHFPPSIGNLTNLYELDFSNNQLEGVIHSHVN 381
Query: 271 -------------------KVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLE 311
+PSWL+TL SLV ++L+ NKLTG ID FQ +SLE ++L
Sbjct: 382 EFSFSSLSYVNLGYNLFNGTIPSWLYTLSSLVVLDLSHNKLTGHIDEFQF-DSLENIYLN 440
Query: 312 KNQIHGTIPSSLFQLCG-------------TIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
N++HG IPSS+F+L + ++F L+NL LDLSNN LL T+SG
Sbjct: 441 MNELHGPIPSSIFKLVNLRYLYLSSNNLSEVLETNKFGNLRNLIELDLSNNMLL-LTTSG 499
Query: 359 NIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418
N + LP++ L SN +S S+ + G +L L+LS N ++
Sbjct: 500 NSN--SILPNIESLDLSNNKISGVWSW---------------NMGNDTLWYLNLSYNSIS 542
Query: 419 HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478
+ PWKNI LDL +N +QG + PP ST F VS+NKLSG+I IC SS++ L L
Sbjct: 543 GFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEISSLICRASSMEILDL 602
Query: 479 SHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538
S NNLSG +P CLGNF+ L L+L+ N G+I TF + I+ D N N+ +G +PR
Sbjct: 603 SDNNLSGRLPHCLGNFSKYLSVLNLRRNRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVPR 662
Query: 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRI 598
SL C KLEV+++GNN INDTFP WLG+L L++L+LRSN F+G + S F +LRI
Sbjct: 663 SLIICRKLEVLDLGNNKINDTFPHWLGTLSKLQVLVLRSNSFHGHIRHSKIKSPFMSLRI 722
Query: 599 IDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQL 654
IDL+ N+F+ LP S++A+ NV+E +YMG+ YY +S+ V +KG + +
Sbjct: 723 IDLAHNDFEGDLPELYLRSLKAIMNVNEGNMTRKYMGNNYYQDSIMVTIKGLEIEF 778
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 312/721 (43%), Positives = 404/721 (56%), Gaps = 91/721 (12%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD VTG+VI LDL SCSWL GTI N+TLF L HLQ LNLAFNNF GS IS FGR
Sbjct: 87 CDWVTGHVIELDL--SCSWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSS 144
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLT-IEQRTFDLLASNLTKLSLLHLGS 120
LT+LN S F G + EISHLS L L LS + T FD L NLTKL LHLG
Sbjct: 145 LTHLNLCDSEFSGPISPEISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGG 204
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
++S I P LLN +S + LDL + G FPD LP L VL L N L+G P+
Sbjct: 205 ISISSIFPKFLLNWAS-LVSLDLLDGALHGRFPDHDIHLPKLEVLDLRWNNGLSGTFPQF 263
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNL--------- 231
+ ++ L EL LS +FSGE+P SIGNL L+ + + C F GSIP+S GNL
Sbjct: 264 SENNSLTELYLSSKNFSGELPASIGNLKSLKILVLHNCGFSGSIPSSIGNLKSLMVLAMP 323
Query: 232 -----------------------------SKATEIL-------------FASNHLTGQLP 249
K ++++ ASN+ +GQLP
Sbjct: 324 GCEFSGSIPASLGNLTQIIALHLDRNHFSGKISKVINFFNNFRNLISLGLASNNFSGQLP 383
Query: 250 HHVSGLLYLTNL---DLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLE 306
+ L L +L D F N G +PSWL+T+PSLV ++L+ NKLTG I FQ +SLE
Sbjct: 384 PSIGNLTNLQDLYFSDNF-NMFNGTIPSWLYTMPSLVQLDLSHNKLTGHIGEFQF-DSLE 441
Query: 307 EVHLEKNQIHGTIPSSLFQL-------------CGTIRFDQFSKLKNLQFLDLSNNNLLS 353
+ L N++HG+IP S+F+L G + F KL+NL LDLSNN +LS
Sbjct: 442 YIDLSMNELHGSIPGSIFKLINLRYLFLSSNNFSGVLETSNFGKLRNLTSLDLSNN-MLS 500
Query: 354 FTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413
T+S D K LP + L SN N+S S+ + G +L L+LS
Sbjct: 501 LTTSD--DSKSMLPYIESLDLSNNNISGIWSW---------------NMGKNTLQYLNLS 543
Query: 414 NNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSL 473
N ++ + PWKN+ LDL +N +QG + PP ST F VS+NKLSG+I C SS+
Sbjct: 544 YNLISGFEMLPWKNLYILDLHSNLLQGPLPTPPNSTFFFSVSHNKLSGEILSLFCKASSM 603
Query: 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFE 533
+ L LS+NNLSG +P CLGNF+ L L+L N G I TF + I++ D N N+ E
Sbjct: 604 RILDLSNNNLSGMLPLCLGNFSKYLSVLNLGRNRFHGIIPQTFLKGNAIRNLDFNGNQLE 663
Query: 534 GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSF 593
G LPRSL C KLEV+++GNN INDTFP WLG+LP L++L+LRSN F+G + S F
Sbjct: 664 GLLPRSLIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKIKSPF 723
Query: 594 QALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQ 653
+LRIIDL+ N+F+ LP S++A NVDE +YMG +YY +SV V +KG + +
Sbjct: 724 MSLRIIDLAYNDFEGDLPEMYLRSLKATMNVDEGNMTRKYMGDSYYQDSVMVTIKGLEIE 783
Query: 654 L 654
Sbjct: 784 F 784
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 311/717 (43%), Positives = 403/717 (56%), Gaps = 86/717 (11%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD VTG+VI LDL SCSWL GTI N+TLF L H+Q LNLAFNNF GS IS FGR
Sbjct: 85 CDWVTGHVIELDL--SCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSS 142
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLT-IEQRTFDLLASNLTKLSLLHLGS 120
LT+LN S S F GL+ EISHLS L L LS T F+ L NLTKL LHLG
Sbjct: 143 LTHLNLSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGG 202
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
++S + P SLLN S++ L LS + G FPD LP L VL L N L+G P+
Sbjct: 203 ISISSVFPNSLLN-RSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRF 261
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE---- 236
N ++ L EL LS +FSGE+P SIGNL L+T+D++ C F GSIP S NL++ T
Sbjct: 262 NENNSLTELYLSSKNFSGELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLN 321
Query: 237 --------------------ILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPS-- 274
I ++NH +GQ P + L L LD N L+G +PS
Sbjct: 322 GNHFSGKIPNIFNNLRNLISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHV 381
Query: 275 ------------------------WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHL 310
WL+TL SLV ++L NKLTG I FQ +SLE + L
Sbjct: 382 NEFLFSSLSYVYLGYNLFNGIIPSWLYTLLSLVVLHLGHNKLTGHIGEFQF-DSLEMIDL 440
Query: 311 EKNQIHGTIPSSLFQLC-------------GTIRFDQFSKLKNLQFLDLSNNNLLSFTSS 357
N++HG IPSS+F+L G + F KL+NL L LSNN +LS T+S
Sbjct: 441 SMNELHGPIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNN-MLSLTTS 499
Query: 358 GNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417
N SNC + + S ++ KI G S + K +L L+LS N +
Sbjct: 500 SN---------------SNCILPKIESIDLSNNKISGVWSWNMGK--DTLWYLNLSYNSI 542
Query: 418 THIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLS 477
+ + PWKN+ LDL +N +QG++ PP ST F V +NKLSG I P IC +SS++ L
Sbjct: 543 SGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVLD 602
Query: 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLP 537
LS NNLSG +P CLGNF+ L L+L+ N G I +F + I++ D N N+ EG +P
Sbjct: 603 LSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVP 662
Query: 538 RSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALR 597
RSL C KLEV+N+GNN INDTFP WLG+LP L++L+LRSN F+G + S F +LR
Sbjct: 663 RSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLR 722
Query: 598 IIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQL 654
IIDL+ N+F+ LP S++ NVDE +YMG YY++SV V +KG + +
Sbjct: 723 IIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEF 779
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 310/717 (43%), Positives = 402/717 (56%), Gaps = 86/717 (11%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD VTG+VI LDL SCSWL GTI N+TLF L H+Q LNLAFNNF GS IS FGR
Sbjct: 86 CDWVTGHVIELDL--SCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSS 143
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLT-IEQRTFDLLASNLTKLSLLHLGS 120
LT+LN S S F GL+ EISHLS L L LS T F+ L NLTKL LHLG
Sbjct: 144 LTHLNLSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGG 203
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
++S + P SLLN S++ L LS + G FPD LP L VL L N L+G P+
Sbjct: 204 ISISSVFPNSLLN-RSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRF 262
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE---- 236
N ++ L EL L +FSGE+P SIGNL L+T+D++ C F GSIP S NL++ T
Sbjct: 263 NENNSLTELYLLSKNFSGELPASIGNLKSLQTLDLSNCEFSGSIPASLENLTQITSLNLN 322
Query: 237 --------------------ILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPS-- 274
I ++NH +GQ P + L L LD N L+G +PS
Sbjct: 323 GNHFSGKIPNIFNNLRNLISIGLSNNHFSGQFPPSIGNLTNLYYLDFSYNQLEGVIPSHV 382
Query: 275 ------------------------WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHL 310
WL+TL SLV ++L NKLTG I FQ +SLE + L
Sbjct: 383 NEFLFSSLSYVYLGYNLFNGIIPSWLYTLLSLVVLHLGHNKLTGHIGEFQF-DSLEMIDL 441
Query: 311 EKNQIHGTIPSSLFQLC-------------GTIRFDQFSKLKNLQFLDLSNNNLLSFTSS 357
N++HG IPSS+F+L G + F KL+NL L LSNN +LS T+S
Sbjct: 442 SMNELHGPIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNN-MLSLTTS 500
Query: 358 GNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417
N SNC + + S ++ KI G S + K +L L+LS N +
Sbjct: 501 SN---------------SNCILPKIESIDLSNNKISGVWSWNMGK--DTLWYLNLSYNSI 543
Query: 418 THIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLS 477
+ + PWKN+ LDL +N +QG++ PP ST F V +NKLSG I P IC +SS++ L
Sbjct: 544 SGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVLD 603
Query: 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLP 537
LS NNLSG +P CLGNF+ L L+L+ N G I +F + I++ D N N+ EG +P
Sbjct: 604 LSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVP 663
Query: 538 RSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALR 597
RSL C KLEV+N+GNN INDTFP WLG+LP L++L+LRSN F+G + S F +LR
Sbjct: 664 RSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLR 723
Query: 598 IIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQL 654
IIDL+ N+F+ LP S++ NVDE +YMG YY++SV V +KG + +
Sbjct: 724 IIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEF 780
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493544|ref|XP_002267509.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 308/709 (43%), Positives = 405/709 (57%), Gaps = 84/709 (11%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD VTG++IGLDL SCSWL G I NSTLF HL+ LNLA N+F GS +S FGR
Sbjct: 85 CDWVTGHIIGLDL--SCSWLFGIIHSNSTLFLFPHLRRLNLASNDFSGSSVSVGFGRFSS 142
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRV-LTIEQRTFDLLASNLTKLSLLHLGS 120
LT+LN S S F GL+ SEISHLS L L LS F+ L NLTKL LHL
Sbjct: 143 LTHLNLSDSGFSGLISSEISHLSNLVSLDLSWNSDAEFAPHGFNSLVQNLTKLQKLHLRG 202
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
++S + P SLLN S++ LDLS + G FPD P L VL L GN L+G P+
Sbjct: 203 ISISSVFPDSLLN-RSSLISLDLSSCGLHGRFPDHDIHFPKLEVLDLQGNNDLSGNFPRF 261
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKAT----- 235
+ ++ L EL LS +FSGE+P SIGNL L+T+ I+ C F GSIP S NL++ T
Sbjct: 262 SENNSLMELYLSSKNFSGELPASIGNLKSLQTLYISNCEFSGSIPASLENLTQITSLNLD 321
Query: 236 EILFAS-------------------NHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPS-- 274
E LF+ N+ +GQLP + L L L+L+ N L+G +PS
Sbjct: 322 ENLFSGKIPNVFSNLRNLISLHLHGNNFSGQLPSSIGNLTNLQGLNLYDNQLEGVIPSFV 381
Query: 275 ----------------------WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312
WL+ LPSLV + L NKLTG I FQS +SLE + L+
Sbjct: 382 NGFLSLSYVDLGYNLFNGIIPSWLYALPSLVVLYLDHNKLTGHIGEFQS-DSLELICLKM 440
Query: 313 NQIHGTIPSSLFQLC-------------GTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGN 359
N++HG IPSS+F+L G + F KL+NL LDLSNN L S TSS
Sbjct: 441 NKLHGPIPSSIFKLVNLRYLHLSSNNLSGVLETSNFGKLRNLTSLDLSNNMLSSITSS-- 498
Query: 360 IDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419
+ LPS+ +L FSN N+S S+ + G +L L+LS N ++
Sbjct: 499 -NSNSILPSIQRLDFSNNNISGVWSW---------------NMGKNTLQYLNLSYNSISG 542
Query: 420 IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479
+ PW+N+ TLDL +N +QG + P ST F VS+NKLSG+I IC SS++ LS
Sbjct: 543 FEMLPWENLYTLDLHSNLLQGPLPTLPNSTFFFSVSHNKLSGEISSLICKASSMRIFDLS 602
Query: 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539
+NNLSG +P CLGNF+ L L+L+ N G I TF + I++ D N N+ EG +PRS
Sbjct: 603 NNNLSGVLPHCLGNFSKDLFVLNLRRNQFHGIIPQTFLKGNAIRNLDFNDNQLEGPVPRS 662
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRII 599
L C KLEV+++GNN INDTFP WLG+LP L++L+LRSN F+G + +S F +LRII
Sbjct: 663 LIICRKLEVLDLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGRSKIKSPFMSLRII 722
Query: 600 DLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMK 648
DL+ N+F+ LP S++A+ N+DE +YMG YY +S+ V +K
Sbjct: 723 DLAHNDFEGDLPEMYLRSLKAIMNIDEGNMTRKYMGEEYYQDSIVVTIK 771
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 303/727 (41%), Positives = 412/727 (56%), Gaps = 92/727 (12%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
C VTG+VI LDL SCS LRG + NS+LF LSHL+ LNLAFN F S I PEFG
Sbjct: 18 CHGVTGHVIALDL--SCSGLRGNLSSNSSLFHLSHLRRLNLAFNYFNRSSIPPEFGMFSS 75
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGS 120
LT+LN S + F G VP+EISHLSKL L LS L +E ++ NLT + + L
Sbjct: 76 LTHLNLSSTWFSGQVPTEISHLSKLISLDLSLNEPLILEAPAMKMIVQNLTLVREIFLDY 135
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
N+S + SL+NLSS++T L L+ +QG FP+ IF LPNL++L L N L G LP
Sbjct: 136 INMSSVDLGSLMNLSSSLTSLSLNLCGLQGQFPENIFHLPNLQLLSLLLNSDLYGRLPVS 195
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
NWSS L L L + FSG +P IGNL ++ +D+ C F GS+P S GNL + ++ +
Sbjct: 196 NWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLGNCAFYGSVPASLGNLQQLNQLDLS 255
Query: 241 SNHLTGQ------------------------------------------------LPHHV 252
+N+ TGQ LP H+
Sbjct: 256 NNNWTGQIPDVFGNLSKLNSLSLQVGNFSGMLPSSVFNLTELLRLDLSQNQLEGTLPDHI 315
Query: 253 SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312
GL +T LDL N L G +PS LF LPSLV NL N LTG E+
Sbjct: 316 CGLDNVTYLDLSYNLLSGTIPSCLFGLPSLVWFNLNNNHLTG------------ELGEHC 363
Query: 313 NQIHGTIPSSLFQLCGTIRFDQ-------------FSKLKNLQFLDLSNNNLLSFTSSGN 359
N+I+G IP S+ +L FD FS +KNL LDLS+N+L T N
Sbjct: 364 NKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNMKNLWGLDLSHNSLSVVT---N 420
Query: 360 IDIKYSLPSLLKLSFSNCNVSEFPSFLR----------NSEKIHGRISKH-DSKGWKSLI 408
+ + P KL+ S+CN+ EFP FL+ + +IHG I K +KG +SL
Sbjct: 421 NNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHGEIPKWLSAKGMQSLQ 480
Query: 409 DLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC 468
LDLS+NFLT + P +++ LDL +N +Q + P S + L++NNKL+G+IPP+IC
Sbjct: 481 YLDLSHNFLTIVNELP-PSLQYLDLTSNLLQQPFPILPQSMYILLIANNKLTGEIPPWIC 539
Query: 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528
++++ + ++LS+N+LSG IP CLGNF+T+L L+L++NS G I +F + I+S DLN
Sbjct: 540 NITTFQIINLSNNSLSGNIPQCLGNFSTELSVLNLRSNSFHGTIPGSFTEGNKIRSLDLN 599
Query: 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSI 588
N+ EGSLP SLA C LEV+++GNN IND+FP WL +LP L++L+LRSNR +G +
Sbjct: 600 GNELEGSLPLSLANCKMLEVLDLGNNYINDSFPLWLQTLPKLQVLVLRSNRLHGSIGNPT 659
Query: 589 TTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD-EQATRLQYMGHAYYDESVTVAM 647
F +LRIIDLS NEF LP + + +AMK VD E +Y+G YY +S+ + M
Sbjct: 660 AISPFSSLRIIDLSHNEFIGLLPTQYIANFQAMKKVDGEVKATPKYIGEIYYQDSIVLTM 719
Query: 648 KGHDFQL 654
KG + +
Sbjct: 720 KGTEIPM 726
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 291/692 (42%), Positives = 391/692 (56%), Gaps = 46/692 (6%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD TG+VIGL L SC L G+I+ +STLF L HLQ L+L+ N+F S I G+L
Sbjct: 91 CDRETGHVIGLHLASSC--LYGSINSSSTLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSR 148
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCR-VLTIEQRTFDLLASNLTKLSLLHLGS 120
L L+ SFS F G +PSE+ LSKL L LS L +++ L NLT L LHL
Sbjct: 149 LRSLDLSFSGFSGQIPSELLALSKLVFLDLSANPKLQLQKPGLRNLVQNLTHLKKLHLSQ 208
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
N+S P+ L +LSS + + G FP +IF LP+L+ L + N+ L YLP+
Sbjct: 209 VNISSTIPYELASLSSLTSLFL-GECGLHGEFPMKIFQLPSLQYLTVRDNLDLISYLPEF 267
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
+SPL+ LDL+ + FSGE+P SIG L L +DI+ CNF GS+P+S G+L++ + +
Sbjct: 268 QETSPLKMLDLAGTSFSGELPTSIGRLGSLTELDISSCNFTGSVPSSLGHLTQLYYLDLS 327
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-GF 299
+NH +GQ+P ++ L L L L N SWL L + L L G I
Sbjct: 328 NNHFSGQIPSSMANLTQLIYLSLSWNDFNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSL 387
Query: 300 QSPNSLEEVHLEKNQIHGTIPSSLFQLC-------------GTIRFDQFSKLKNLQFLDL 346
+ + L + L NQ+ G IPSSLF+L GT+ SKLKNL +L L
Sbjct: 388 VNMSQLNILSLSDNQLSGQIPSSLFELVNLQGLYLLSNYLNGTVELQLLSKLKNLIYLQL 447
Query: 347 SNNNL--LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSE----------KIHG 394
S+N L LS+T + +LP L +CN++EFP FL+N KIHG
Sbjct: 448 SDNRLSFLSYTRT-----NATLPKFKHLGLGSCNLTEFPDFLQNQHELEIITLSENKIHG 502
Query: 395 RISK---HDSKGWKSLIDLDLSNNFLTHIALHP----WKNIRTLDLRNNKIQGSILVPPP 447
I K + SK ++L+ L+LS NFLT P W + TL L +N +QG + VPPP
Sbjct: 503 PIPKWVWNISK--ETLVTLELSENFLTGFDQRPFVLPWSKLHTLRLDSNMLQGPLPVPPP 560
Query: 448 STEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507
ST +LVS NKL+G+I P IC+++SL+ L LS NNLSG IP CL NF+ L L L +NS
Sbjct: 561 STVEYLVSGNKLTGEISPLICNMTSLELLDLSSNNLSGRIPQCLANFSRSLFVLDLGSNS 620
Query: 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSL 567
L+G I + + N+ DL N+F+G +PRSL C LE + +GNN IND FP WLG+L
Sbjct: 621 LDGPIPEICTVSHNLNVIDLGDNQFQGQIPRSLVNCTMLEHLVLGNNKINDIFPFWLGAL 680
Query: 568 PLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQ 627
P L++LILRSNRF+G + T F F LRIIDLS NEF LP F + +AMK D
Sbjct: 681 PQLQVLILRSNRFHGAIGSWHTNFRFPKLRIIDLSDNEFIGDLPSEYFQNWDAMKLTD-I 739
Query: 628 ATRLQYMG-HAYYDESVTVAMKGHDFQLYMLN 658
A+ L+YM D V + G+ + + M N
Sbjct: 740 ASGLRYMQISPMIDLKNNVMITGYMYSMTMTN 771
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493403|ref|XP_003616990.1| Receptor-like protein kinase [Medicago truncatula] gi|355518325|gb|AES99948.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 302/754 (40%), Positives = 403/754 (53%), Gaps = 121/754 (16%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD+++ +VIGLDL SCS L G + NST+F+L HLQ LNLAFNNF GS + L
Sbjct: 81 CDSMSDHVIGLDL--SCSNLNGELHPNSTIFQLRHLQQLNLAFNNFSGSLLHVSIDDLVN 138
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRV-----LTIEQRTFDLLASNLTKLSLL 116
LT+LN S + GG +PS ISHLSKL L LS L + T+ L N T L L
Sbjct: 139 LTHLNLSHCSLGGNIPSTISHLSKLVSLDLSSYYDWHMGLKLNPLTWKKLIHNATNLREL 198
Query: 117 HLGSTNLSLIKPFSL---LNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHL 173
LG N+S I+ SL NLSS++ L L T +QGN I LPNL+ L L N +L
Sbjct: 199 SLGCVNMSSIRASSLSMLKNLSSSLVSLGLGETGLQGNLSSDILSLPNLQTLDLSSNKYL 258
Query: 174 TGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSK 233
+ LPK NWS+PLR LDLS + FSGEIPYSIG L L +D+ CNF G IP S GNL++
Sbjct: 259 SSQLPKSNWSTPLRYLDLSRTPFSGEIPYSIGQLKSLTQLDLEMCNFDGLIPPSLGNLTQ 318
Query: 234 ATEILFASNHLTGQLPHHVSGLLYLTNLDL------------------------FGNSLQ 269
T + F SN+L G++P +S L +LT DL GN+L
Sbjct: 319 LTSLFFQSNNLKGEIPSSLSKLTHLTYFDLQYNNFSGSIPNVFENLIKLEYLGFSGNNLS 378
Query: 270 GKVPSWLFTLPSLVSVNLAWNKLTGPI--------------------DGFQSP-----NS 304
G VPS LF L L ++L NKL GPI +G P S
Sbjct: 379 GLVPSSLFNLTELSHLDLTNNKLVGPIPTEITKHSKLYLLALANNMLNGAIPPWCYSLTS 438
Query: 305 LEEVHLEKNQIHGTI----------------------PSSLFQ-------------LCGT 329
L E+ L NQ+ G+I P+S+++ L G
Sbjct: 439 LVELDLNDNQLTGSIGEFSTYSLIYLFLSNNNIKGDFPNSIYKLQNLFDLGLSSTNLSGV 498
Query: 330 IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNS 389
+ F QFS K L FLDLS+N+LLS +D LP+L L S+ N+S FP FL +
Sbjct: 499 VDFHQFSNCKKLFFLDLSHNSLLSINIESRVD--SILPNLGILYLSSSNISSFPKFLAQN 556
Query: 390 EKIHGRISKHDSKGWKSLIDLDLSNN--------FLTHIALHPWKNIRTLDLRNNKIQGS 441
+ +L++LDLS N + LH W++I+ +DL NK+QG
Sbjct: 557 Q---------------NLVELDLSKNKIQGKVPKWFHEKLLHTWRDIQHVDLSFNKLQGD 601
Query: 442 ILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITL 501
+ +P FL+SNN +G I +C+ SSL L+L+HNNL+G IP CLG F + L L
Sbjct: 602 LPIPRYGIYYFLLSNNNFTGNIDFSLCNASSLNVLNLAHNNLTGMIPQCLGTFPS-LSVL 660
Query: 502 HLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561
++ N+L GHI TF + ++ LN N+ EG LP+SLA C KLEV+++G+N + DTFP
Sbjct: 661 DMQMNNLYGHIPRTFSKGNAFETIKLNGNRLEGPLPQSLAHCTKLEVLDLGDNNVEDTFP 720
Query: 562 CWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAM 621
WL +L L++L LRSN+ +G + S T F LRI D+S N F LP + + M
Sbjct: 721 NWLETLQELQVLSLRSNKLHGAITCSSTKHPFPKLRIFDVSNNNFIGPLPTSCIKNFQGM 780
Query: 622 KNVDEQATRLQYMGHA-YYDESVTVAMKGHDFQL 654
NV++ T LQYMG + YY++SV V +KG +L
Sbjct: 781 MNVNDNNTGLQYMGKSNYYNDSVVVVVKGLSMEL 814
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773180|emb|CAN78183.1| hypothetical protein VITISV_024119 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 294/715 (41%), Positives = 385/715 (53%), Gaps = 116/715 (16%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
C+ VT VIGLDL SCS L GTI NS+LF L HL+ LNLAFN+F S IS +FG+ +
Sbjct: 71 CNRVTSLVIGLDL--SCSGLYGTIHSNSSLFLLPHLRRLNLAFNDFNKSSISAKFGQFRR 128
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRV-LTIEQRTFDLLASNLTKLSLLHLGS 120
+T+LN SFS F G++ EISHLS L L LS L +E +F L NLTKL LHL
Sbjct: 129 MTHLNLSFSGFSGVIAPEISHLSNLVSLDLSIYSGLGLETSSFIALTQNLTKLQKLHLRG 188
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
N+S I P SLLNLSS + +DLS ++ G FPD LPNL+VL L GN L+G PK
Sbjct: 189 INVSSILPISLLNLSSLKS-MDLSSCQLHGRFPDDDLQLPNLKVLKLKGNHDLSGNFPKF 247
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLS-------- 232
N S+ + LDLS ++FSGE+P SI L LE++D+++CNF GSIP G L+
Sbjct: 248 NESNSILLLDLSSTNFSGELPSSISILKSLESLDLSHCNFSGSIPLVLGKLTQITYLDLS 307
Query: 233 ----------------KATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ------- 269
K + + +SN GQ + L L+ LDL N L+
Sbjct: 308 RNQFDGEISNVFNRFRKVSVLDISSNSFRGQFIASLDNLTELSFLDLSNNKLEGVIPSHV 367
Query: 270 -----------------GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312
G +PSWLF+LPSL+ ++L+ NKL G ID FQSP SLE + L
Sbjct: 368 KELSSLSSVHLSNNLFNGTIPSWLFSLPSLIELDLSHNKLNGHIDEFQSP-SLESIDLSN 426
Query: 313 NQIHGTIPSSLFQLC-------------GTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGN 359
N++ G +PSS+F+L G + D F L+NL +LDLS N L T S
Sbjct: 427 NELDGPVPSSIFELVNLTYLQLSSNNLGGIVETDMFMNLENLVYLDLSYNIL---TLSNY 483
Query: 360 IDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419
+LPSL L S+C++SEFP FL + E
Sbjct: 484 NHSNCALPSLETLLLSSCDISEFPRFLCSQEL---------------------------- 515
Query: 420 IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479
+ LDL NNKI G + P + V G +P IC +S ++ L S
Sbjct: 516 --------LAFLDLSNNKIYGQL--PKWAWNV---------GPLPSLICEMSYIEVLDFS 556
Query: 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539
+NNLSG IP CLGNF+ L L+ N L G I TF + I++ D N N+ EG L RS
Sbjct: 557 NNNLSGLIPQCLGNFSKSFSVLDLRMNQLYGTIPKTFSKGNLIRNLDFNGNQLEGPLLRS 616
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRII 599
L C +L+V+++GNN INDTFP WL +LP L++LILRSNRF+G + S F F LRI+
Sbjct: 617 LINCRRLQVLDLGNNRINDTFPHWLETLPELQVLILRSNRFHGHVRGSNFQFPFPKLRIM 676
Query: 600 DLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQL 654
DLSRN F L + + +AM N E L++MG Y +S+ V +KG DF+
Sbjct: 677 DLSRNGFSASLSKIYLKNFKAMMNATEDKMELKFMGEYSYRDSIMVTIKGFDFEF 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 683 | ||||||
| TAIR|locus:2085537 | 894 | RLP34 "AT3G11010" [Arabidopsis | 0.464 | 0.354 | 0.329 | 4.6e-62 | |
| TAIR|locus:2825762 | 994 | RLP6 "AT1G45616" [Arabidopsis | 0.874 | 0.600 | 0.317 | 1e-57 | |
| TAIR|locus:2173777 | 792 | RLP54 "receptor like protein 5 | 0.680 | 0.587 | 0.323 | 1.1e-57 | |
| TAIR|locus:2074633 | 943 | RLP35 "AT3G11080" [Arabidopsis | 0.913 | 0.661 | 0.300 | 2.1e-57 | |
| TAIR|locus:2205005 | 1019 | RLP7 "AT1G47890" [Arabidopsis | 0.898 | 0.602 | 0.300 | 9.6e-57 | |
| TAIR|locus:2119430 | 741 | RLP47 "receptor like protein 4 | 0.729 | 0.672 | 0.317 | 2.5e-56 | |
| TAIR|locus:2129246 | 891 | RLP50 "receptor like protein 5 | 0.890 | 0.682 | 0.291 | 7.2e-56 | |
| TAIR|locus:2180587 | 811 | RLP52 "receptor like protein 5 | 0.734 | 0.618 | 0.300 | 1.1e-54 | |
| TAIR|locus:2119445 | 719 | AT4G13820 [Arabidopsis thalian | 0.421 | 0.400 | 0.338 | 6.3e-51 | |
| TAIR|locus:2144392 | 957 | RLP53 "receptor like protein 5 | 0.893 | 0.637 | 0.295 | 3.6e-50 |
| TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 4.6e-62, Sum P(2) = 4.6e-62
Identities = 108/328 (32%), Positives = 167/328 (50%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
C+ +G VI L+L SCS L G NS++ L L +L+ + N+F G +I+ L
Sbjct: 27 CNAKSGEVIELNL--SCSSLHGRFHSNSSIRNLHFLTTLDRSHNDFEG-QITSSIENLSH 83
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDXXXXXXXXXXXXXXXXT 121
LT L+ S++ F G + + I +LS+LT L LS + +
Sbjct: 84 LTSLDLSYNRFSGQILNSIGNLSRLTSLDLSFNQFSGQ---IPSSIGNLSHLTFLGLSGN 140
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
P S+ NLS +T L LSG R G FP I L NL L+L N + +G +P
Sbjct: 141 RFFGQIPSSIGNLSH-LTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKY-SGQIPSSI 198
Query: 182 WS-SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
+ S L L LS+++F GEIP S GNL L +D+++ G+ P NL+ + + +
Sbjct: 199 GNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVVSLS 258
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID--G 298
+N TG LP +++ L L N+ G PS+LF +PSL + L+ N+L G ++
Sbjct: 259 NNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKGTLEFGN 318
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQL 326
SP++L+ +++ N G IPSS+ +L
Sbjct: 319 ISSPSNLQYLNIGSNNFIGPIPSSISKL 346
|
|
| TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.0e-57, P = 1.0e-57
Identities = 209/659 (31%), Positives = 298/659 (45%)
Query: 31 LFRLSHLQSLNLAFN-NFLGSRIS---PEFGRLKELTYLN-----PSFSNFGGLVPSEIS 81
L +L++L SL+L+ + + S +S P F L L ++N S + +P E S
Sbjct: 168 LLQLTNLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIEFS 227
Query: 82 HLSKLTHLGLS-CRVLTIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSLLNLSSTMTD 140
++ L L L C +L R + NL P L N +++
Sbjct: 228 YMWSLRSLTLKGCNLLG---RFPNSVLLIPNLESISLDHNLNLEGSLPNFLRN--NSLLK 282
Query: 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWS-SPLRELDLSLSDFSGE 199
L + T G P+ I L +L L L + +G +P S S L L LS ++F GE
Sbjct: 283 LSIYNTSFSGTIPNSISNLKHLTSLKLQQSA-FSGRIPSSLRSLSHLSNLVLSENNFVGE 341
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
IP S+ NL L D++ N G+ P+S NL++ I SNH TG LP +S L+
Sbjct: 342 IPSSVSNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTIS---QLS 398
Query: 260 NLDLFG---NSLQGKVPSWLFTLPSLVSVNLAWNKL--TGPIDGFQSPNSLEEVHLEKNQ 314
NL+ F NS G +PS LF + SL ++ L++N+L T I ++L+ + L+ N
Sbjct: 399 NLEFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLLLDNNN 458
Query: 315 IHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDIKYSLPSLLKLSF 374
+ + D F LK D ++S L L
Sbjct: 459 FKAS----------QVDLDVFLSLKRLVSLALSGIPLSTTNITS--DSEFS-SHLEYLEL 505
Query: 375 SNCNVSEFPSFLRNSEKIHG-RISKHDSKG------WK--SLIDLDLSNNFLTHI----- 420
S CN+ EFP F+RN + +S ++ KG W+ L +DLSNN L
Sbjct: 506 SGCNIIEFPEFIRNQRNLSSIDLSNNNIKGQVPNWLWRLPELSTVDLSNNSLIGFNGSLK 565
Query: 421 ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXXX 480
AL K I LDL +N QG + +PP + FL S N +G IPP IC
Sbjct: 566 ALSGSK-IVMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSN 624
Query: 481 XXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL 540
G IP CL + L L+L+NNSL+G + + F NA + S D++ N EG LP SL
Sbjct: 625 NNLHGLIPRCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASL 684
Query: 541 AKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCK-SITTFSFQALRII 599
A C LE++NV +N INDTFP W RSN F G L F F LRI
Sbjct: 685 AGCSALEILNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRIT 744
Query: 600 DLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMG----HAYYDESVTVAMKGHDFQL 654
D+S N+F LP F + A + + T LQY+G + YY S+ + KG ++
Sbjct: 745 DVSHNDFVGTLPSDYFMNWTA---ISKSETELQYIGDPEDYGYYT-SLVLMNKGVSMEM 799
|
|
| TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 161/498 (32%), Positives = 239/498 (47%)
Query: 186 LRELDLSLSDF-SGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHL 244
LR LDLS + F S IP G L +LE++D++ F+G +P+S NLS+ T + + N L
Sbjct: 116 LRYLDLSENHFDSSPIPSGFGRLTYLESLDLSKNGFIGEVPSSISNLSRLTNLDLSYNKL 175
Query: 245 TGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG--FQSP 302
TG +P+ + L L N+DL N G +PS+LFT+P LVS+NL N L+ P++ + +
Sbjct: 176 TGGIPN-LHSLTLLENIDLSYNKFSGAIPSYLFTMPFLVSLNLRQNHLSDPLENINYSAT 234
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFD-QFSKLKXXXXXXXXXXXXXXXXXXXXID 361
+ L + + N + I + +L I+ D F K
Sbjct: 235 SKLLILDMAYNLMSHRILEPISKLANLIQIDLSFQKTPYTFNFDFLLFKSLVRLDLSGNS 294
Query: 362 IKY---SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR-ISKHDSKG------WK--SLID 409
+ +L L S+CN++EFP F+++ +++ IS + KG W S++
Sbjct: 295 VSVVGTGSENLTHLDLSSCNITEFPMFIKDLQRLWWLDISNNRIKGKVPELLWTLPSMLH 354
Query: 410 LDLSNNFLTHIALHPW----KNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPP 465
++LS N + P +I LDL +N +GS + PP + SNN +G IP
Sbjct: 355 VNLSRNSFDSLEGTPKIILNSSISELDLSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPL 414
Query: 466 YICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525
C GTIP CL N + L L L NNSL G + D E+ +
Sbjct: 415 IFCKRYRLSLLDLSNNNFSGTIPRCLTNVSLGLEALKLSNNSLTGRLPD-IED--RLVLL 471
Query: 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLC 585
D+ N+ G LPRSL C L+ +NV N INDTFP W RSNRF+GP+
Sbjct: 472 DVGHNQISGKLPRSLVNCTTLKFLNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPIS 531
Query: 586 KSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA-MKNVDEQATRLQYMG--HAYYDE- 641
+ SF ALRIID+SRN F LP+ F + A + N + +Y G H+ Y+
Sbjct: 532 SPEVSLSFTALRIIDISRNSFNGSLPQNYFANWSAPLVNTPQGYRWPEYTGDEHSKYETP 591
Query: 642 -----SVTVAMKGHDFQL 654
S+ + +KG +L
Sbjct: 592 LWSYPSIHLRIKGRSIEL 609
|
|
| TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 2.1e-57, P = 2.1e-57
Identities = 206/685 (30%), Positives = 301/685 (43%)
Query: 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKE 61
CD +G VI LDL SCSWL G+ NS+LFRL +L+ L+L N+ L I G L
Sbjct: 94 CDTKSGEVIELDL--SCSWLYGSFHSNSSLFRLQNLRVLDLTQND-LDGEIPSSIGNLSH 150
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDXXXXXXXXXXXXXXXXT 121
LT L+ S++ F GL+PS I +LS+LT L LS + +
Sbjct: 151 LTSLHLSYNQFLGLIPSSIENLSRLTSLHLSSNQFSGQ---IPSSIGNLSHLTSLELSSN 207
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
S P S+ NLS+ +T L L G P I L L LYL N + G +P
Sbjct: 208 QFSGQIPSSIGNLSN-LTFLSLPSNDFFGQIPSSIGNLARLTYLYLSYN-NFVGEIPSSF 265
Query: 182 WS-SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
+ + L L + + SG +P S+ NL L + +++ F G+IP + LS + +
Sbjct: 266 GNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQFTGTIPNNISLLSNLMDFEAS 325
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPS-LVSVNLAWNKLTGPIDGF 299
+N TG LP + + L LDL N L G + + PS L + + N G I
Sbjct: 326 NNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTI--- 382
Query: 300 QSPNSLEE-VHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXX--- 355
P SL V+L + S L C + F FS LK
Sbjct: 383 --PRSLSRFVNLTLFDL-----SHLNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLND 435
Query: 356 ------XXXXIDIKYSL-------------PS--LLKLSFSNCNVSEFPSFLRNSEKIHG 394
+DI +L PS + L S C +++FP LR ++
Sbjct: 436 ILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITDFPEILRTQHELGF 495
Query: 395 R-ISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL 453
+S + KG L N F +++ + + + + ++K G V PS
Sbjct: 496 LDVSNNKIKGQVPGWLWTLPNLFYLNLSNNTFISFES----SSKKHGLSSVRKPSMIHLF 551
Query: 454 VSNNKLSGQIPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHI- 512
SNN +G+IP +IC G+IP C+ + L L+L+ N+L G +
Sbjct: 552 ASNNNFTGKIPSFICGLRSLNTLDLSENNYNGSIPRCMEKLKSTLFVLNLRQNNLSGGLP 611
Query: 513 HDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXX 572
FE+ ++S D+ N G LPRSL + LEV+NV +N INDTFP W
Sbjct: 612 KHIFES---LRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTFPFWLSSLSKLQV 668
Query: 573 XXXRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNV--DEQATR 630
RSN F+GP+ ++ +F LRIID+S N F LP F AM ++ +E +
Sbjct: 669 LVLRSNAFHGPIHEA----TFPELRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQSN 724
Query: 631 LQYMGHA-YYDESVTVAMKGHDFQL 654
+YMG YY +S+ + KG +L
Sbjct: 725 EKYMGSGLYYQDSMVLMNKGLAMEL 749
|
|
| TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 9.6e-57, Sum P(2) = 9.6e-57
Identities = 202/673 (30%), Positives = 303/673 (45%)
Query: 3 DNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSR----IS----- 53
D +TG + LDL S S L G I N L +L+ L SL+L+ ++F G +S
Sbjct: 164 DKLTG-LERLDL--SQSSLSGQIPIN--LLQLTKLVSLDLSSSDFFGDESFHYLSIDKSF 218
Query: 54 -PEFGR-LKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTIEQRTFDXXXXXX 110
P R L+ L L+ S+ +P E S++ L L L+ C + F
Sbjct: 219 LPLLARNLRNLRELDMSYVKISSEIPEEFSNIRSLRSLNLNGCNLFG----EFPSSILLI 274
Query: 111 XXXXXXXXXXTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGN 170
N +L + + ++++ L + T G PD I L NL L L +
Sbjct: 275 PNLQSIDLG-NNPNLRGNLPVFHENNSLLKLTILYTSFSGAIPDSISSLKNLTSLTLSVS 333
Query: 171 IHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTG 229
+ +G +P S L L LS ++ GEIP SIGNL L + G++P +
Sbjct: 334 -YFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPATLS 392
Query: 230 NLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAW 289
NL+K I +SN TG LP +S L L N G + S L +PSL ++L++
Sbjct: 393 NLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHLSY 452
Query: 290 NKLT---GPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXX 346
N+L G + F PN LE ++ P L + FS LK
Sbjct: 453 NQLNDLVGIENIFMLPN-LETFYIYHYNYTKVRPLDL---------NVFSSLKQLGTLYI 502
Query: 347 XXXXXXXXXXXXXIDIKYSLPSLLK-LSFSNCNVSEFPSFLRNSEKIHGR-ISKHDSKG- 403
+I PS L+ LS +CN+++FP F+R + +S + KG
Sbjct: 503 SRIPISTT------NITSDFPSNLEYLSLRSCNITDFPEFIRKGRNLQILDLSNNKIKGQ 556
Query: 404 -----WK--SLIDLDLSNNFLT--HIALH--PWKNIRTLDLRNNKIQGSILVPPPSTEVF 452
W+ +L +DLSNN L+ H+++ P + ++DL +N QG + +P S F
Sbjct: 557 VPDWLWRMPTLNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKSLRYF 616
Query: 453 LVSNNKLSGQIPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHI 512
SNN +G+IP IC G++P CL + L L L+NNSL G +
Sbjct: 617 SGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSL 676
Query: 513 HDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXX 572
+ F NA+ ++S D++ N+ EG LP SL C LEV+NVG+N IND FP
Sbjct: 677 PEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNSLQKLQV 736
Query: 573 XXXRSNRFYGPLCK-SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRL 631
SN+F+G L F F L+IID+S N+F LP F + AM + +
Sbjct: 737 LVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKDNNIEP 796
Query: 632 QYMGH-AYYDESV 643
+Y+ + + Y S+
Sbjct: 797 EYIQNPSVYGSSL 809
|
|
| TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 177/557 (31%), Positives = 264/557 (47%)
Query: 135 SSTMTDLDLSGTRIQGNFPDQ--IFLLPNLRVLYLCGNIHLTGYLPKCNWS-SPLRELDL 191
+ + +LDL + + G +F L +L+ L L G+ HL+G LP + L+ L L
Sbjct: 23 TGVVVELDLQYSHLNGPLRSNSSLFRLQHLQKLVL-GSNHLSGILPDSIGNLKRLKVLVL 81
Query: 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILF----------AS 241
+ G+IP S+GNL +L +D++Y +F P S GNL++ T++L
Sbjct: 82 VNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGD 141
Query: 242 NHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP--IDGF 299
N L G LP ++S L L D+ GNS G +PS LF +PSL+ ++L N +GP I
Sbjct: 142 NQLKGMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSGPFEIGNI 201
Query: 300 QSPNSLEEVHLEKNQIHGTIPS-SLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXX 358
SP++L+ +++ +N + I S+F ++ + S +
Sbjct: 202 SSPSNLQLLNIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINLK----------------- 244
Query: 359 XIDIKYSLPSLLK-LSFSNCNVSEFPSFLRNSEKI-HGRISKHDSKG----WK-SLIDL- 410
I SLPS ++ L +CN+SEFP FLRN + + IS + +G W SL +L
Sbjct: 245 -ISSTVSLPSPIEYLGLLSCNISEFPKFLRNQTSLEYLDISANQIEGQVPEWLWSLPELR 303
Query: 411 --DLSNNFLTHI-----ALHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQ 462
++S+N + + + LD+ +N Q L+P S SNN+ SG+
Sbjct: 304 YVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGE 363
Query: 463 IPPYICXXXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522
IP IC G+IP C N L LHL+NN+L G I + ++
Sbjct: 364 IPKTICELDNLRILVLSNNNFSGSIPRCFENL--HLYVLHLRNNNLSG-IFPEEAISHHL 420
Query: 523 QSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYG 582
QSFD+ N F G LP+SL C +E +NV +N INDTFP W RSN FYG
Sbjct: 421 QSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYG 480
Query: 583 PLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNV-DEQATRLQY----MGHA 637
P+ + SF LRI D+S N F LP F M +V D +QY +
Sbjct: 481 PIFSPGDSLSFSRLRIFDISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRD 540
Query: 638 YYDESVTVAMKGHDFQL 654
+Y +SV + KG +L
Sbjct: 541 FYHKSVALINKGLKMEL 557
|
|
| TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.2e-56, Sum P(2) = 7.2e-56
Identities = 195/670 (29%), Positives = 286/670 (42%)
Query: 18 CSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVP 77
CSW G I + + L N N L S S RL+ L L+ S+++ +P
Sbjct: 67 CSW--GGISCDPKTGVVVELDLGNSDLNGRLRSNSS--LFRLQHLQSLDLSYNDLSCTLP 122
Query: 78 SEISHLSKLTHLGL-SCRVLTIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSLLNLSS 136
+ L L L C + + T L S+ NL
Sbjct: 123 DSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLSYNDDLTGEILD---SMGNLKH 179
Query: 137 TMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC--NWSSPLRELDLSLS 194
L L+ + G P + L L L L N + TG LP N S LR L+L
Sbjct: 180 LRV-LSLTSCKFTGKIPSSLGNLTYLTDLDLSWN-YFTGELPDSMGNLKS-LRVLNLHRC 236
Query: 195 DFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTG-------------NLSKATEILFAS 241
+F G+IP S+G+L L +DI+ F P S NLS T + +S
Sbjct: 237 NFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSSLTNVDLSS 296
Query: 242 NHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP--IDGF 299
N LP ++S L L D+ GNS G +PS LF LPSL+ ++L N +GP I
Sbjct: 297 NQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSGPLKIGNI 356
Query: 300 QSPNSLEEVHLEKNQIHGTIPSSLFQLCG----TIRFDQFSKLKXXXXXXXXXXXXXXXX 355
SP++L+E+++ +N I+G IP S+ +L G ++ F +
Sbjct: 357 SSPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDL 416
Query: 356 XXXXIDIKYS--LPS-LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDL 412
++I S LPS ++ L S+CN+S+FP FL N SL LD+
Sbjct: 417 SGINLNISSSHHLPSHMMHLILSSCNISQFPKFLENQT---------------SLYHLDI 461
Query: 413 SNNFLT-HIALHPWK--NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICX 469
S N + + W+ +R +++ N G + + P F+ S+NK SG+IP +C
Sbjct: 462 SANQIEGQVPEWLWRLPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPRAVCE 521
Query: 470 XXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529
G+IPPC L LHL+NNSL G I + + ++S D+
Sbjct: 522 IGTLVLSNNNFS---GSIPPCFEISNKTLSILHLRNNSLSGVIPEESLHGY-LRSLDVGS 577
Query: 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSIT 589
N+ G P+SL C L+ +NV N INDTFP W RSN F+GP+
Sbjct: 578 NRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRSNEFHGPIFSPGD 637
Query: 590 TFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKN-VD--EQATRLQYMG--HAYYDESVT 644
+ SF LR D+S N F LP F M + VD + +G + +SV
Sbjct: 638 SLSFSKLRFFDISENRFSGVLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQESFHKSVV 697
Query: 645 VAMKGHDFQL 654
+ +KG + +L
Sbjct: 698 LTIKGLNMEL 707
|
|
| TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 504 (182.5 bits), Expect = 1.1e-54, Sum P(2) = 1.1e-54
Identities = 160/533 (30%), Positives = 249/533 (46%)
Query: 128 PFSLLNLSSTMTDLDLSGTRIQGNFPDQIF-LLPNLRVLYLCGNIHLTGYLPK-CNWSSP 185
P L N + + LDLS G+ PD I L P L+ L L N G +PK S
Sbjct: 104 PTVLYNCTK-LQYLDLSQNLFNGSLPDDINRLAPKLKYLDLAAN-SFAGDIPKNIGRISK 161
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCN-FMG-SIPTSTGNLSKATEILFASNH 243
L+ L+L +S++ G P IG+L LE + + + F +PT G L K + +
Sbjct: 162 LKVLNLYMSEYDGTFPSEIGDLSELEELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMN 221
Query: 244 LTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSP 302
L G++ V + L ++DL N+L G++P LF L +L + L N LTG I S
Sbjct: 222 LIGEISAVVFENMTDLKHVDLSVNNLTGRIPDVLFGLKNLTELYLFANDLTGEIPKSISA 281
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQF-SKLKXXXXXXXXXXXXXXXXXXXXID 361
+L + L N ++G+IP S+ L F ++L
Sbjct: 282 KNLVHLDLSANNLNGSIPESIGNLTNLELLYLFVNELTGEIPRAIGKLPELKELKLFTNK 341
Query: 362 IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI- 420
+ +P+ ++ F +S+ F + ++ G++ ++ G K + SNN I
Sbjct: 342 LTGEIPA--EIGF----ISKLERFEVSENQLTGKLPENLCHGGKLQSVIVYSNNLTGEIP 395
Query: 421 -ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICXXXXXXXXXXX 479
+L + + ++ L+NN GS+ + +T SNN +G+IP +IC
Sbjct: 396 ESLGDCETLSSVLLQNNGFSGSVTISN-NTR----SNNNFTGKIPSFICELHSLILLDLS 450
Query: 480 XXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539
G+IP C+ N +T L L+L N L G I + +++++S D+ N+ G LPRS
Sbjct: 451 TNKFNGSIPRCIANLST-LEVLNLGKNHLSGSIPENI--STSVKSIDIGHNQLAGKLPRS 507
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSITTFSFQALRII 599
L + LEV+NV +N INDTFP W RSN F+G SI F LRII
Sbjct: 508 LVRISSLEVLNVESNKINDTFPFWLDSMQQLQVLVLRSNAFHG----SINQNGFSKLRII 563
Query: 600 DLSRNEFKDFLPRR---NFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKG 649
D+S N F LP N+T+M ++ +++Q YM YY +S+ V +KG
Sbjct: 564 DISGNHFNGTLPLDFFVNWTAMFSLGKIEDQYMGTNYMRTNYYSDSIVVMIKG 616
|
|
| TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 105/310 (33%), Positives = 149/310 (48%)
Query: 365 SLPSLL-KLSFSNCNVSEFPSFLRNSEKIHGR-ISKHDSKG----WK-SLIDL---DLSN 414
SLPS + L S+CN+ EFP+FL N ++ IS + G W SL +L ++S
Sbjct: 371 SLPSPMGTLILSSCNIPEFPNFLENQTTLYYLDISANKIGGQVPQWLWSLPELQYVNISQ 430
Query: 415 NFLTHI-----ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICX 469
N + + + LD+ +N Q + P ST +FL S+N+ SG+IP IC
Sbjct: 431 NSFSGFEGPADVIQRCGELLMLDISSNTFQDPFPLLPNSTTIFLGSDNRFSGEIPKTICK 490
Query: 470 XXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASN-IQSFDLN 528
G+IP C F T L LHL+NN+L G + E+ S+ ++S D+
Sbjct: 491 LVSLDTLVLSNNNFNGSIPRCFEKFNTTLSVLHLRNNNLSGEFPE--ESISDHLRSLDVG 548
Query: 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSI 588
N+ G LP+SL C +LE +NV +N+IND FP W RSN F+GP+
Sbjct: 549 RNRLSGELPKSLINCTRLEFLNVEDNIINDKFPFWLRMLPKLQIFVLRSNEFHGPISSLG 608
Query: 589 TTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKN----VDEQATRLQYMGHAYYDESVT 644
+ SF LRI D+S N F L F AM + VD +R Y SVT
Sbjct: 609 DSLSFPKLRIFDISENRFNGVLRSDFFAGWSAMSSAVDIVDIMPSRYAGRDSGNYYNSVT 668
Query: 645 VAMKGHDFQL 654
+ +KG +L
Sbjct: 669 MTVKGSIIEL 678
|
|
| TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 198/669 (29%), Positives = 291/669 (43%)
Query: 12 LDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSN 71
LDL S + +G I S++ LSHL L+L+ N+F G +I G L LTYLN +
Sbjct: 126 LDL--SFNDFKGQI--TSSIENLSHLTYLDLSSNHFSG-QILNSIGNLSRLTYLNLFDNQ 180
Query: 72 FGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDXXXXXXXXXXXXXXXXTNLSLIKPFSL 131
F G PS I +LS LT L LS + F S P S+
Sbjct: 181 FSGQAPSSICNLSHLTFLDLSYNRFFGQ---FPSSIGGLSHLTTLSLFSNKFSGQIPSSI 237
Query: 132 LNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWS-SPLRELD 190
NLS+ +T LDLS G P I L L L L N + G +P + + L L
Sbjct: 238 GNLSN-LTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSN-NFVGEIPSSFGNLNQLTRLY 295
Query: 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPH 250
+ + SG P + NL L + ++ F G++P + +LS + + N TG P
Sbjct: 296 VDDNKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPS 355
Query: 251 HVSGLLYLTNLDLFGNSLQGKVPSWLFTLPS-LVSVNLAWNKLTGPIDGFQSPN-SLEEV 308
+ + LT + L GN L+G + + PS L +++ N GPI S L +
Sbjct: 356 FLFTIPSLTYIRLNGNQLKGTLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRL 415
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKXXXXXXXXXXXXXXXXXXXXIDI------ 362
+ G + S+F ++ S L +D+
Sbjct: 416 DISHLNTQGPVDFSIFSHLKSLLDLNISHLNTTTRIDLNYFLSYFKRLLL-LDLSGNHVS 474
Query: 363 ---KYSL---PSLL--KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSN 414
K S+ PS L L S C ++EFP F+R ++ G+ LD+SN
Sbjct: 475 ATNKSSVSDPPSQLIQSLYLSGCGITEFPEFVRTQHEL----------GF-----LDISN 519
Query: 415 NFLT-HIALHPWKN--IRTLDLRNNKIQG--SILVPPPSTEVFLVSNNKLSGQIPPYICX 469
N + + W+ + ++L NN + G P PS L SNN G+IP +IC
Sbjct: 520 NKIKGQVPDWLWRLPILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSFICG 579
Query: 470 XXXXXXXXXXXXXXXGTIPPCLGNFTTQLITLHLKNNSLEGHI-HDTFENASNIQSFDLN 528
G+IP C+G+ + L L+L+ N L G + FE ++S D+
Sbjct: 580 LRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEI---LRSLDVG 636
Query: 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWXXXXXXXXXXXXRSNRFYGPLCKSI 588
N+ G LPRSL+ LEV+NV +N INDTFP W RSN F+GP+ ++
Sbjct: 637 HNQLVGKLPRSLSFFSTLEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHEA- 695
Query: 589 TTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNV--DEQATRLQYMGHA-YYDESVTV 645
+F LRIID+S N F LP F AM ++ +E + +YMG YY +S+ +
Sbjct: 696 ---TFPELRIIDISHNRFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSGLYYQDSMVL 752
Query: 646 AMKGHDFQL 654
KG +L
Sbjct: 753 MNKGVAMEL 761
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 683 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-47 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-27 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-27 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-21 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.001 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.003 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 3e-47
Identities = 176/576 (30%), Positives = 257/576 (44%), Gaps = 66/576 (11%)
Query: 1 ICDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLK 60
C+N + V+ +DL G + G I +S +FRL ++Q++NL+ N G F
Sbjct: 64 TCNNSS-RVVSIDLSGKN--ISGKI--SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS 118
Query: 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGS 120
L YLN S +NF G +P + L L LS +L+ E + + L +L LG
Sbjct: 119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE---IPNDIGSFSSLKVLDLGG 173
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
L P SL NL+S + L L+ ++ G P ++ + +L+ +YL GY
Sbjct: 174 NVLVGKIPNSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYL-------GY---- 221
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
++ SGEIPY IG L L +D+ Y N G IP+S GNL +
Sbjct: 222 -------------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGF 299
N L+G +P + L L +LDL NSL G++P + L +L ++L N TG I
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328
Query: 300 QSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL-----SF 354
S L+ + L N+ G IP +L K NL LDLS NNL
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNL------------GKHNNLTVLDLSTNNLTGEIPEGL 376
Query: 355 TSSGN----IDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
SSGN I SL + S C NS G + +K + L
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS--FSGELPSEFTK-LPLVYFL 433
Query: 411 DLS-NNFLTHIALHPWK--NIRTLDLRNNKIQGSI--LVPPPSTEVFLVSNNKLSGQIPP 465
D+S NN I W +++ L L NK G + E +S N+ SG +P
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493
Query: 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525
+ SLS L L LS N LSG IP L + +L++L L +N L G I +F +
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSS-CKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552
Query: 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561
DL+ N+ G +P++L L VN+ +N ++ + P
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 3e-27
Identities = 108/360 (30%), Positives = 165/360 (45%), Gaps = 63/360 (17%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317
+ ++DL G ++ GK+ S +F LP + ++NL+ N+L+GPI
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPI--------------------- 109
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
P +F ++R+ L+LSNNN G S+P+L L SN
Sbjct: 110 --PDDIFTTSSSLRY-----------LNLSNNNFTGSIPRG------SIPNLETLDLSNN 150
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-HI--ALHPWKNIRTLDLR 434
+S G I D + SL LDL N L I +L ++ L L
Sbjct: 151 MLS-------------GEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196
Query: 435 NNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCL 491
+N++ G I L S + + N LSG+IP I L+SL +L L +NNL+G IP L
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256
Query: 492 GNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNV 551
GN L L L N L G I + + + S DL+ N G +P + + LE++++
Sbjct: 257 GNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315
Query: 552 GNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611
+N P L SLP L++L L SN+F G + K++ + L ++DLS N +P
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLTGEIP 373
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-27
Identities = 129/428 (30%), Positives = 182/428 (42%), Gaps = 53/428 (12%)
Query: 216 TYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275
C + G N S+ I + +++G++ + L Y+ ++L N L G +P
Sbjct: 56 DVCLWQGITCN---NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112
Query: 276 LFTLP-SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQ 334
+FT SL +NL+ N TG I PN LE + L N + G IP+ +
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPN-LETLDLSNNMLSGEIPNDI---------GS 162
Query: 335 FSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSF----SNCNVSEFPSFLRNSE 390
FS +L+ LDL N L+ I SL +L L F SN V + P L
Sbjct: 163 FS---SLKVLDLGGNVLVG-------KIPNSLTNLTSLEFLTLASNQLVGQIPREL---- 208
Query: 391 KIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS-- 448
+ S W L +LS I ++ LDL N + G I P S
Sbjct: 209 ------GQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPI---PSSLG 257
Query: 449 ----TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504
+ + NKLSG IPP I SL L L LS N+LSG IP + L LHL
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLF 316
Query: 505 NNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL 564
+N+ G I + +Q L NKF G +P++L K L V+++ N + P L
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376
Query: 565 GSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNV 624
S L LIL SN G + KS+ ++LR + L N F LP FT + + +
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGA--CRSLRRVRLQDNSFSGELP-SEFTKLPLVYFL 433
Query: 625 DEQATRLQ 632
D LQ
Sbjct: 434 DISNNNLQ 441
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 4e-21
Identities = 98/317 (30%), Positives = 157/317 (49%), Gaps = 13/317 (4%)
Query: 8 NVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNP 67
+I LDL S + L G I + + +L +L+ L+L NNF G +I L L L
Sbjct: 285 KLISLDL--SDNSLSGEIPE--LVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQL 339
Query: 68 SFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIK 127
+ F G +P + + LT L LS LT E + NL KL L S +L
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLEGEI 396
Query: 128 PFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP-L 186
P SL S + + L G P + LP + L + N +L G + W P L
Sbjct: 397 PKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSL 454
Query: 187 RELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTG 246
+ L L+ + F G +P S G+ LE +D++ F G++P G+LS+ ++ + N L+G
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513
Query: 247 QLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSL 305
++P +S L +LDL N L G++P+ +P L ++L+ N+L+G I + SL
Sbjct: 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573
Query: 306 EEVHLEKNQIHGTIPSS 322
+V++ N +HG++PS+
Sbjct: 574 VQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 25/114 (21%)
Query: 456 NNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDT 515
N L G IP I L L+ ++LS N++ G IPP LG+ T+
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS------------------- 467
Query: 516 FENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPL 569
++ DL+ N F GS+P SL + L ++N+ N ++ P LG L
Sbjct: 468 ------LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 170 NIHLTGYLPKCNWSS--PLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
N L G++P + S L+ ++LS + G IP S+G++ LE +D++Y +F GSIP S
Sbjct: 427 NQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLL 256
G L+ + N L+G++P + G L
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALGGRL 514
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 25/111 (22%)
Query: 422 LHPWKN-------------IRTLDLRNNKIQGSILVPPPSTEVFL-------VSNNKLSG 461
HPW I L L N ++G I P+ L +S N + G
Sbjct: 401 QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI----PNDISKLRHLQSINLSGNSIRG 456
Query: 462 QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHI 512
IPP + S++SL+ L LS+N+ +G+IP LG T+ L L+L NSL G +
Sbjct: 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS-LRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSP 302
L G +P+ +S L +L +++L GNS++G +P L ++ SL ++L++N G I +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 303 NSLEEVHLEKNQIHGTIPSSL 323
SL ++L N + G +P++L
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 29/82 (35%), Positives = 41/82 (50%)
Query: 501 LHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTF 560
L L N L G I + ++QS +L+ N G++P SL LEV+++ N N +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 561 PCWLGSLPLLKILILRSNRFYG 582
P LG L L+IL L N G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSF 69
+GLD G LRG I + + +L HLQS+NL+ N + I P G + L L+ S+
Sbjct: 423 LGLDNQG----LRGFIPN--DISKLRHLQSINLS-GNSIRGNIPPSLGSITSLEVLDLSY 475
Query: 70 SNFGGLVPSEISHLSKLTHLGL 91
++F G +P + L+ L L L
Sbjct: 476 NSFNGSIPESLGQLTSLRILNL 497
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 400 DSKGWKSLID-LDLSNNFLTHIALHPW---KNIRTLDLRNNKIQGSILVPP-----PSTE 450
DS K ID L L N L + +++++++L N I+G+I PP S E
Sbjct: 412 DSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNI--PPSLGSITSLE 469
Query: 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG 492
V +S N +G IP + L+SL+ L+L+ N+LSG +P LG
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 522 IQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581
I L+ G +P ++K L+ +N+ N I P LGS+ L++L L N F
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 582 GPLCKSITTFSFQALRIIDLSRNEFKDFLP 611
G + +S+ + +LRI++L+ N +P
Sbjct: 480 GSIPESLGQLT--SLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 70/310 (22%), Positives = 109/310 (35%), Gaps = 47/310 (15%)
Query: 323 LFQLCGTIRFDQ-FSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSE 381
+L T R + KL LQ L L N L + PSL +L S
Sbjct: 6 KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR 65
Query: 382 FPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGS 441
P L++ + G KG L +LDLS+N L +++
Sbjct: 66 IPRGLQSL--LQGLT-----KGCG-LQELDLSDNALGPDGCGVLESLLR----------- 106
Query: 442 ILVPPPSTEVFLVSNNKLSGQIPPYIC-----SLSSLKYLSLSHNNLSGTIPPCLGN--- 493
S + ++NN L + + +L+ L L N L G L
Sbjct: 107 ----SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162
Query: 494 FTTQLITLHLKNNSLEG----HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVK---- 545
L L+L NN + + + + N++ DLN N +LA+ +
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222
Query: 546 LEVVNVGNNMINDTFPCWLGS-----LPLLKILILRSNRFYGPLCKSITTF--SFQALRI 598
LEV+N+G+N + D L S L L L N K + ++L
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282
Query: 599 IDLSRNEFKD 608
+DL N+F +
Sbjct: 283 LDLRGNKFGE 292
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
L +L L NN L F+ N++ DL+ N P + + L +++ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 115 LLHLGSTNLS--LIK---PFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCG 169
L HL S NLS I+ P SL +++S + LDLS G+ P+ + L +LR+L L G
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499
Query: 170 NIHLTGYLPKCNWSSPLRELDLSLSDFSG 198
N L+G +P L + +D +G
Sbjct: 500 N-SLSGRVPAALGGRLLHRASFNFTDNAG 527
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.003
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 22/187 (11%)
Query: 338 LKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397
L NL+ LDLS N+L +L +L L S +S+ P + +
Sbjct: 162 LPNLKNLDLSFNDLSDLPKL-----LSNLSNLNNLDLSGNKISDLPPEIELLSALE---- 212
Query: 398 KHDSKGWKSLIDLDLSNNFLTHI--ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVS 455
+LDLSNN + + +L KN+ L+L NNK++ + + +
Sbjct: 213 -----------ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLD 261
Query: 456 NNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDT 515
+ + SL++L+ L LS N+LS +P + L+L +
Sbjct: 262 LSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLN 321
Query: 516 FENASNI 522
+N
Sbjct: 322 SILLNNN 328
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 683 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.87 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.85 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.66 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.56 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.56 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.27 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.18 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.14 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.14 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.09 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.09 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.07 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.06 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.06 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.05 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.04 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.95 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.9 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.9 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.89 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.88 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.87 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.85 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.69 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.49 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.38 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.38 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.21 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.15 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.14 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.13 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.11 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.0 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.95 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.93 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.9 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.88 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.81 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.69 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.63 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.6 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.3 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.26 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.61 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.52 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.15 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.61 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.53 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 93.98 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 93.74 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 93.59 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 93.59 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.94 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.96 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.28 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.98 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.98 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 83.89 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 82.71 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 81.12 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=512.58 Aligned_cols=529 Identities=31% Similarity=0.472 Sum_probs=306.8
Q ss_pred CCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcc-cCCCCCCCEEeCCCCCCCCCCCccCcCCC
Q 043978 6 TGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLS 84 (683)
Q Consensus 6 ~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~ 84 (683)
+++|+.|||++ +.+++.++. ++..+++|++|+|++|.+.+. +|.. +..+++|++|++++|.+.+.+|. +.++
T Consensus 68 ~~~v~~L~L~~--~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 68 SSRVVSIDLSG--KNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CCcEEEEEecC--CCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 34666666666 666655544 566666666666666666543 4443 33666666666666666655553 3456
Q ss_pred CCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcE
Q 043978 85 KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRV 164 (683)
Q Consensus 85 ~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 164 (683)
+|++|++++|.+. ..+|..++++++|++|++++|.+.+..|..+.++ ++|++|++++|.+.+..|..+..+++|++
T Consensus 141 ~L~~L~Ls~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNMLS---GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCccc---ccCChHHhcCCCCCEEECccCcccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 6666666666554 3444555666666666666666665556666666 66666666666666666666666666666
Q ss_pred EEccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc
Q 043978 165 LYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 165 L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 243 (683)
|++++| .+.+..+ .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 217 L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 666666 4443333 45555566666666665555555555566666666666665555555555555566666666555
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEEECCCCcCcccCCcc
Q 043978 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIPSS 322 (683)
Q Consensus 244 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~ 322 (683)
+.+..|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.. ..+..+++|+.|++++|.+.+.+|.
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~- 374 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE- 374 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh-
Confidence 55555555555555666666655555555555555555555555555554322 2233445555555555555544443
Q ss_pred chhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCccc
Q 043978 323 LFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSK 402 (683)
Q Consensus 323 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~ 402 (683)
.+..+++|+.|++++|.+.. .+|..+ .
T Consensus 375 -----------~~~~~~~L~~L~l~~n~l~~---------------------------~~p~~~---------------~ 401 (968)
T PLN00113 375 -----------GLCSSGNLFKLILFSNSLEG---------------------------EIPKSL---------------G 401 (968)
T ss_pred -----------hHhCcCCCCEEECcCCEecc---------------------------cCCHHH---------------h
Confidence 23334445555555554321 122111 3
Q ss_pred CCCcCcEEECCCCcccccCCC---CCCCceEEeCCCCCCCccCCC---CCCCCcEEEccCCcccCCCCccccCCCCCCEE
Q 043978 403 GWKSLIDLDLSNNFLTHIALH---PWKNIRTLDLRNNKIQGSILV---PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYL 476 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 476 (683)
.+++|+.|++++|.+++..+. .++.|+.|++++|.+++..+. .+++|+.|++++|.+.+..|..+ ..++|+.|
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 444555555555554433221 334455555555554443221 34555666666666655555544 34667777
Q ss_pred EcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 477 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
++++|++.+.+|..+..+. +|+.|++++|++.+..|..+.++++|+.|++++|.+++..|..|..+++|++|++++|++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred ECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence 7777777666666665544 677777777777666666677777777777777777766677777777777777777777
Q ss_pred CccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCc
Q 043978 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNE 605 (683)
Q Consensus 557 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 605 (683)
.+.+|..+..+++|+.|++++|++.+.+|... .+..+....+.+|+
T Consensus 560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~---~~~~~~~~~~~~n~ 605 (968)
T PLN00113 560 SGEIPKNLGNVESLVQVNISHNHLHGSLPSTG---AFLAINASAVAGNI 605 (968)
T ss_pred cccCChhHhcCcccCEEeccCCcceeeCCCcc---hhcccChhhhcCCc
Confidence 66667666677777777777777766665332 22233334445554
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=495.49 Aligned_cols=527 Identities=29% Similarity=0.440 Sum_probs=343.3
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccC-cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEI-SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~-~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
+++.|+|++|.+.+. .+..|..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+. +.+|. ..+++|+
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~---~~~p~--~~l~~L~ 143 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT---GSIPR--GSIPNLE 143 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc---cccCc--cccCCCC
Confidence 455566655555443 44455555666666666655554444333 35555555555555544 11221 2345555
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSL 193 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~ 193 (683)
+|++++|.+.+..|..++.+ ++|++|++++|.+.+..|..+.++++|++|++++| .+.+..+ .+..+++|+.|++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccCChHHhcC-CCCCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcC
Confidence 55555555554445555555 55555555555555555555555555555555555 3333333 444445555555555
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
|.+.+.+|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 55544445455555555555555555444444445555555555555555444444444444555555555554444444
Q ss_pred ccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 353 (683)
..+..++ +|+.|++++|.+.+.+|. .+..+++|+.|++++|.+..
T Consensus 302 ~~~~~l~-----------------------~L~~L~l~~n~~~~~~~~------------~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 302 ELVIQLQ-----------------------NLEILHLFSNNFTGKIPV------------ALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred hhHcCCC-----------------------CCcEEECCCCccCCcCCh------------hHhcCCCCCEEECcCCCCcC
Confidence 4444444 455555555544443333 34445555555555555321
Q ss_pred cccccccccccCCCCccEEEcccCCCC-CcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC---CCCCce
Q 043978 354 FTSSGNIDIKYSLPSLLKLSFSNCNVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH---PWKNIR 429 (683)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~ 429 (683)
..+ ..+..+++|+.|++++|.+. .+|.++ ..+++|+.|++++|.+.+..+. .+++|+
T Consensus 347 ~~p----~~l~~~~~L~~L~Ls~n~l~~~~p~~~---------------~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 347 EIP----KNLGKHNNLTVLDLSTNNLTGEIPEGL---------------CSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred cCC----hHHhCCCCCcEEECCCCeeEeeCChhH---------------hCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 100 11224455555555555543 233322 5567899999999998876543 678999
Q ss_pred EEeCCCCCCCccCCC---CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC
Q 043978 430 TLDLRNNKIQGSILV---PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN 506 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 506 (683)
.|++++|++++..+. .++.|+.|++++|.+.+.++..+..+++|+.|++++|.+.+.+|..+. . ++|+.|++++|
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-~~L~~L~ls~n 485 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-KRLENLDLSRN 485 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-ccceEEECcCC
Confidence 999999999876543 678999999999999999999899999999999999999888887653 3 48999999999
Q ss_pred cccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCC
Q 043978 507 SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586 (683)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 586 (683)
++.+..|..|.++++|+.|++++|++.+..|..+..+++|++|++++|.+++.+|..|..+++|+.|++++|++.+.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred CccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccce
Q 043978 587 SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATR 630 (683)
Q Consensus 587 ~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~ 630 (683)
.+..++.|+++++++|++.+.+|.. +.+..+......+|+
T Consensus 566 --~l~~l~~L~~l~ls~N~l~~~~p~~--~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 566 --NLGNVESLVQVNISHNHLHGSLPST--GAFLAINASAVAGNI 605 (968)
T ss_pred --hHhcCcccCEEeccCCcceeeCCCc--chhcccChhhhcCCc
Confidence 4577899999999999999999953 223333444445554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=309.82 Aligned_cols=357 Identities=23% Similarity=0.276 Sum_probs=185.5
Q ss_pred CEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCC
Q 043978 211 ETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWN 290 (683)
Q Consensus 211 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 290 (683)
+.|++++|++....+..|.++++|+++++..|.++ .+|.......+++.|++.+|.|+....+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 34555555555444444555555555555555544 33333333334555555555554444444444455555555555
Q ss_pred cccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCcc
Q 043978 291 KLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370 (683)
Q Consensus 291 ~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~ 370 (683)
.|+. +....|..-.++++|++++|.|+.+.. +.+..+.+|.
T Consensus 160 ~is~-----------------------------------i~~~sfp~~~ni~~L~La~N~It~l~~----~~F~~lnsL~ 200 (873)
T KOG4194|consen 160 LISE-----------------------------------IPKPSFPAKVNIKKLNLASNRITTLET----GHFDSLNSLL 200 (873)
T ss_pred hhhc-----------------------------------ccCCCCCCCCCceEEeecccccccccc----ccccccchhe
Confidence 4443 222244444455555555555544422 2233444555
Q ss_pred EEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCccccc---CCCCCCCceEEeCCCCCCC---ccCCC
Q 043978 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILV 444 (683)
Q Consensus 371 ~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~l~~n~l~---~~~~~ 444 (683)
.|.++.|+++.+|... |+.++.|+.|++..|++... .+.++++|+.|.+..|.|. +..|.
T Consensus 201 tlkLsrNrittLp~r~--------------Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRS--------------FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred eeecccCcccccCHHH--------------hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 5555555555555432 24566666666666665533 3345555566666555443 34444
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
.+.++++|++..|++...-.+++.++++|+.|++|+|.|...-++.|. ++++|++|+|++|+|+...++.|..+..|++
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhh
Confidence 555555555555555555555566666666666666666533333333 2335666666666666555556666666666
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCc---cccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeC
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC---WLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDL 601 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 601 (683)
|.|++|.+...-..+|..+.+|++|||++|.+...+.+ .|..+++|+.|.+.||++... ++ ..+..++.|++|||
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~k-rAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PK-RAFSGLEALEHLDL 423 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-ch-hhhccCcccceecC
Confidence 66666666555555556666666666666655443222 344556666666666655422 21 33455555666666
Q ss_pred CCCcCCCCCcHHHHhcchhhccccc
Q 043978 602 SRNEFKDFLPRRNFTSMEAMKNVDE 626 (683)
Q Consensus 602 s~n~~~~~~p~~~~~~~~~L~~l~l 626 (683)
.+|.|.. +..++|..+ .|+.|.+
T Consensus 424 ~~NaiaS-Iq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 424 GDNAIAS-IQPNAFEPM-ELKELVM 446 (873)
T ss_pred CCCccee-ecccccccc-hhhhhhh
Confidence 6666553 333455555 5555544
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=307.66 Aligned_cols=383 Identities=25% Similarity=0.255 Sum_probs=225.7
Q ss_pred CEEEcCCccCCcCChhhhh-cCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECC
Q 043978 114 SLLHLGSTNLSLIKPFSLL-NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~-~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 192 (683)
+.|+++++.+..+....+. -+|+.-+.||+++|++...-+..|.++++|+.+++..| .++..+.......+++.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeee
Confidence 3455555555443322222 23456667888888888777777778888888888777 554432233334557888888
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 272 (683)
+|.++..-.+.+..++.|+.||++.|.|...-...|..-.++++|++++|.|+....+.|..+.+|..|.++.|.++...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp 213 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP 213 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence 88777666667777888888888888887665666777777888888888888777777888888888888888887655
Q ss_pred CccccCCCCCcEEEccCCcccCc-CCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCc
Q 043978 273 PSWLFTLPSLVSVNLAWNKLTGP-IDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351 (683)
Q Consensus 273 ~~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 351 (683)
+..|..+++|+.|+|..|+|... .-.|.++++|+.|.+..|.|. .++.+.|..+.++++|+++.|++
T Consensus 214 ~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~------------kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 214 QRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS------------KLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred HHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc------------cccCcceeeecccceeecccchh
Confidence 66666688888888887777642 334446666666666666665 34444566666666666666665
Q ss_pred cccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCC---CCCc
Q 043978 352 LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHP---WKNI 428 (683)
Q Consensus 352 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L 428 (683)
..+... .. .++++|+.|++|+|.|..+.... +++|
T Consensus 282 ~~vn~g----~l--------------------------------------fgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 282 QAVNEG----WL--------------------------------------FGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhhhcc----cc--------------------------------------cccchhhhhccchhhhheeecchhhhcccc
Confidence 444321 12 34444444444444444433322 2334
Q ss_pred eEEeCCCCCCCcc---CCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC--hhhhhccCcccEEEC
Q 043978 429 RTLDLRNNKIQGS---ILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP--PCLGNFTTQLITLHL 503 (683)
Q Consensus 429 ~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~--~~~~~~~~~L~~L~l 503 (683)
+.|++++|+|+.. .+..+..|++|++++|.+...-..+|.++++|++|||++|.+...+- ...+...++|+.|++
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 4444444433321 11123344555555555554444455555555555555555543221 112222335555555
Q ss_pred CCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
.+|++..+...+|.++.+|+.|||.+|.+..+.|.+|..+ .|++|.+.
T Consensus 400 ~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 400 TGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 5555555555555555555555555555555555555555 55555553
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=313.34 Aligned_cols=267 Identities=26% Similarity=0.299 Sum_probs=233.5
Q ss_pred cccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCC
Q 043978 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKL 113 (683)
Q Consensus 34 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L 113 (683)
-..+..|++++|.+.. +.+.+.++..|.+|++.+|+.... |.+++.+..++.+++++|.+. .+|..+..+.+|
T Consensus 44 qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls----~lp~~i~s~~~l 116 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS----ELPEQIGSLISL 116 (565)
T ss_pred hcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh----hccHHHhhhhhh
Confidence 3457889999998754 456789999999999999998755 778999999999999999875 667778899999
Q ss_pred CEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCC
Q 043978 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 193 (683)
+++++++|.+... +..++.+ -.+..++..+|+++ ..|+++..+.+|..+++.+| ......+....++.|++|++..
T Consensus 117 ~~l~~s~n~~~el-~~~i~~~-~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 117 VKLDCSSNELKEL-PDSIGRL-LDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhccccceeec-CchHHHH-hhhhhhhccccccc-cCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence 9999999998877 5677888 88999999999998 67888999999999999999 7777777555588999999999
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
|.+. .+|..++.+.+|+.|++..|++. ..| .|..|..|++++++.|++.....+....++++..||+++|+++ ..|
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCc
Confidence 8887 78999999999999999999997 566 8999999999999999998544455568999999999999999 899
Q ss_pred ccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~ 316 (683)
+.+..+.+|+.||+++|.+++.+..++++ .|+.|.+.+|++.
T Consensus 269 de~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 99999999999999999999988888888 9999999999986
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=310.56 Aligned_cols=489 Identities=26% Similarity=0.326 Sum_probs=298.2
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCc
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLR 163 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 163 (683)
..|+.+.+++|.+.. +...+.++..|..|++.+|.+... |.+++.+ ..++.++.++|+++ .+|+.+..+.+|+
T Consensus 45 v~l~~lils~N~l~~----l~~dl~nL~~l~vl~~~~n~l~~l-p~aig~l-~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV----LREDLKNLACLTVLNVHDNKLSQL-PAAIGEL-EALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCchhh----ccHhhhcccceeEEEeccchhhhC-CHHHHHH-HHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 345666666665542 222345666666666666666555 4455566 66666666666666 4566666666666
Q ss_pred EEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc
Q 043978 164 VLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 243 (683)
+++.+.| .+. ..++.++.+..++.++..+|++. ..|..+..+.++..+++.+|+
T Consensus 118 ~l~~s~n-~~~------------------------el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 118 KLDCSSN-ELK------------------------ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred hhhcccc-cee------------------------ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc
Confidence 6666555 333 34444555555555555555554 445555555555555555555
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccc
Q 043978 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSL 323 (683)
Q Consensus 244 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 323 (683)
+....|..+. ++.|++||...|-+. .+|..++.+.+|+.|++..|++.. .+.|.+++.|++++++.|+|.
T Consensus 172 l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lPef~gcs~L~Elh~g~N~i~------- 241 (565)
T KOG0472|consen 172 LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LPEFPGCSLLKELHVGENQIE------- 241 (565)
T ss_pred hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CCCCCccHHHHHHHhcccHHH-------
Confidence 5543333333 556666666666555 455556666666666666666653 335556666666666666654
Q ss_pred hhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccC
Q 043978 324 FQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKG 403 (683)
Q Consensus 324 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~ 403 (683)
.++.+...+++++..||+.+|++.++|+. ..-+.+|+.||+++|.|+.+|..+ ++
T Consensus 242 -----~lpae~~~~L~~l~vLDLRdNklke~Pde-----~clLrsL~rLDlSNN~is~Lp~sL---------------gn 296 (565)
T KOG0472|consen 242 -----MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-----ICLLRSLERLDLSNNDISSLPYSL---------------GN 296 (565)
T ss_pred -----hhHHHHhcccccceeeeccccccccCchH-----HHHhhhhhhhcccCCccccCCccc---------------cc
Confidence 22222344566666666666665555432 223555666666666666555432 33
Q ss_pred CCcCcEEECCCCcccccCCC--------CCCCceE----EeCCCCCC---C-c----cCC---CCCCCCcEEEccCCccc
Q 043978 404 WKSLIDLDLSNNFLTHIALH--------PWKNIRT----LDLRNNKI---Q-G----SIL---VPPPSTEVFLVSNNKLS 460 (683)
Q Consensus 404 ~~~L~~L~l~~n~~~~~~~~--------~~~~L~~----L~l~~n~l---~-~----~~~---~~~~~L~~L~l~~n~i~ 460 (683)
+ .|+.|.+.+|.+..+.-. .++.|+. =.++..+- + . ..+ ....+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 3 555566666655433100 0011111 00111000 0 0 000 12345677777777777
Q ss_pred CCCCccccCCC--CCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCch
Q 043978 461 GQIPPYICSLS--SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538 (683)
Q Consensus 461 ~~~~~~l~~l~--~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 538 (683)
....+.|..-+ -.+..++++|++. ++|..+.....-.+.+.+++|.+. .+|..++.+++|..|++++|.+. .+|.
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcch
Confidence 44434444332 2778889999987 888877766544455666666664 67778888899999999999887 6788
Q ss_pred hhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 539 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
.+..+..|+.|+++.|++. ..|..+..+..++++-.++|++....+ .....+.+|.+||+.+|.+. .+| -.+++|
T Consensus 453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~--~~l~nm~nL~tLDL~nNdlq-~IP-p~Lgnm 527 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDP--SGLKNMRNLTTLDLQNNDLQ-QIP-PILGNM 527 (565)
T ss_pred hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccCh--HHhhhhhhcceeccCCCchh-hCC-hhhccc
Confidence 8888888999999999887 678877777888888888888876544 34577888999999999997 567 368999
Q ss_pred hhhcccccccceeeeccccceeeEEEEEEeccEEEEee
Q 043978 619 EAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQLYM 656 (683)
Q Consensus 619 ~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (683)
.+|+++++.+|+|+ +++..+.++|+.+.+.+
T Consensus 528 tnL~hLeL~gNpfr-------~Pr~~iLmkgT~aiL~y 558 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR-------QPRHQILMKGTAAILSY 558 (565)
T ss_pred cceeEEEecCCccC-------CCHHHHhccChHHHHHH
Confidence 99999999988775 35566777777655444
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=314.53 Aligned_cols=502 Identities=25% Similarity=0.288 Sum_probs=300.4
Q ss_pred EeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcC
Q 043978 65 LNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144 (683)
Q Consensus 65 L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~ 144 (683)
+|.+++.+.- +|..+..-..++.|+++.|.+...+ + ..+.+.-+|+.|++++|.+... |..+..+ ..|+.|+++
T Consensus 3 vd~s~~~l~~-ip~~i~~~~~~~~ln~~~N~~l~~p--l-~~~~~~v~L~~l~lsnn~~~~f-p~~it~l-~~L~~ln~s 76 (1081)
T KOG0618|consen 3 VDASDEQLEL-IPEQILNNEALQILNLRRNSLLSRP--L-EFVEKRVKLKSLDLSNNQISSF-PIQITLL-SHLRQLNLS 76 (1081)
T ss_pred cccccccCcc-cchhhccHHHHHhhhccccccccCc--h-HHhhheeeeEEeeccccccccC-CchhhhH-HHHhhcccc
Confidence 5666666653 4555555555888888888654222 2 2245555688888888777665 6667777 778888888
Q ss_pred CCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccC
Q 043978 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSI 224 (683)
Q Consensus 145 ~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 224 (683)
.|.|. ..|.....+.+|+++.|.+| ........+..+++|++|++++|.+. .+|..+..+..++.+..++|.....
T Consensus 77 ~n~i~-~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~- 152 (1081)
T KOG0618|consen 77 RNYIR-SVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR- 152 (1081)
T ss_pred hhhHh-hCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh-
Confidence 88777 45667777778888888777 55444446666777777777777766 5666777777777777777622211
Q ss_pred CCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCC
Q 043978 225 PTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNS 304 (683)
Q Consensus 225 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~ 304 (683)
++... ++.+++..|.+.+.++..+..+.. .|++++|.+. . ..+..+++|+.+....|++..... .-++
T Consensus 153 ---lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~---~g~~ 220 (1081)
T KOG0618|consen 153 ---LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEI---SGPS 220 (1081)
T ss_pred ---hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEe---cCcc
Confidence 22222 666666666666666655555555 5777777665 1 224456666666666666543211 2356
Q ss_pred CcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcCh
Q 043978 305 LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS 384 (683)
Q Consensus 305 L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~ 384 (683)
++.|+.++|.++...+ -..-.+|+.++++.|++..++ +....+++|+.+....|.+..+|.
T Consensus 221 l~~L~a~~n~l~~~~~--------------~p~p~nl~~~dis~n~l~~lp-----~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDV--------------HPVPLNLQYLDISHNNLSNLP-----EWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred hheeeeccCcceeecc--------------ccccccceeeecchhhhhcch-----HHHHhcccceEecccchhHHhhHH
Confidence 6677777776652111 122345667777777665554 123356667777777776666655
Q ss_pred hhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC--CCCCceEEeCCCCCCCccCCC----CCCCCcEEEccCCc
Q 043978 385 FLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH--PWKNIRTLDLRNNKIQGSILV----PPPSTEVFLVSNNK 458 (683)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~ 458 (683)
.+ ...++|+.+.+..|.+..+++. .+..|++|++..|++...... ....+..|+.+.|.
T Consensus 282 ri---------------~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 282 RI---------------SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred HH---------------hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 43 3345666667777766666443 466677777777766543221 12224455555555
Q ss_pred ccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCch
Q 043978 459 LSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538 (683)
Q Consensus 459 i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 538 (683)
+.....-.=...+.|+.|.+.+|.+++..-+.+..+. +|+.|+|++|++...+...+.++..|+.|+||+|+++ .+|.
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~ 424 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPD 424 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhH
Confidence 5432211122344566666677766655444454444 6777777777766666666666667777777777766 4566
Q ss_pred hhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 539 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
+...+..|++|..-+|.+. ..| .+..+++|+.+|++.|+++...- ......++|++||+++|.-. ......|..+
T Consensus 425 tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l--~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l 499 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL--PEALPSPNLKYLDLSGNTRL-VFDHKTLKVL 499 (1081)
T ss_pred HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh--hhhCCCcccceeeccCCccc-ccchhhhHHh
Confidence 6666777777777666665 455 46666777777777776653321 11122256777777777643 3444555555
Q ss_pred hhhcccccccc
Q 043978 619 EAMKNVDEQAT 629 (683)
Q Consensus 619 ~~L~~l~l~~n 629 (683)
..+..++..-+
T Consensus 500 ~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 500 KSLSQMDITLN 510 (1081)
T ss_pred hhhhheecccC
Confidence 55555554433
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=308.37 Aligned_cols=504 Identities=24% Similarity=0.269 Sum_probs=352.4
Q ss_pred EECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeC
Q 043978 12 LDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGL 91 (683)
Q Consensus 12 L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~l 91 (683)
+|.++ ...+ .++. .+.....+..|+++.|.+.... .+++.+..+|+.||+++|.+.. .|..+..+.+|+.|++
T Consensus 3 vd~s~--~~l~-~ip~--~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASD--EQLE-LIPE--QILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNL 75 (1081)
T ss_pred ccccc--ccCc-ccch--hhccHHHHHhhhccccccccCc-hHHhhheeeeEEeecccccccc-CCchhhhHHHHhhccc
Confidence 45555 5544 3444 4555566999999999765432 3456667779999999998864 4788999999999999
Q ss_pred CCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCC
Q 043978 92 SCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNI 171 (683)
Q Consensus 92 s~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 171 (683)
+.|.+. .+|....++.+|+++.|.+|.+... |..+..+ ++|++|++++|.+. .+|..+..+..+..+..++|
T Consensus 76 s~n~i~----~vp~s~~~~~~l~~lnL~~n~l~~l-P~~~~~l-knl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N- 147 (1081)
T KOG0618|consen 76 SRNYIR----SVPSSCSNMRNLQYLNLKNNRLQSL-PASISEL-KNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNN- 147 (1081)
T ss_pred chhhHh----hCchhhhhhhcchhheeccchhhcC-chhHHhh-hcccccccchhccC-CCchhHHhhhHHHHHhhhcc-
Confidence 999886 5566778899999999998887766 7788888 99999999999888 67888888888888888887
Q ss_pred CCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCcc
Q 043978 172 HLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHH 251 (683)
Q Consensus 172 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 251 (683)
........ .. ++.+++..+.+.+.++..+..+.. .+++.+|.+. ...+..+++|+.+....|++....
T Consensus 148 ~~~~~lg~---~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--- 215 (1081)
T KOG0618|consen 148 EKIQRLGQ---TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--- 215 (1081)
T ss_pred hhhhhhcc---cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---
Confidence 22222221 11 677777777777777766666665 6888888765 234556777777777777665321
Q ss_pred ccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCccc
Q 043978 252 VSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331 (683)
Q Consensus 252 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~ 331 (683)
-.-++++.|+.++|.++...+. ..-.+|+.+++++|+++..+.++..+.+|+.+.+.+|.++ .+|.
T Consensus 216 -~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~---------- 281 (1081)
T KOG0618|consen 216 -ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPL---------- 281 (1081)
T ss_pred -ecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHH----------
Confidence 1235677777777776632221 2234677777777777665555556667777777777664 3443
Q ss_pred ccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEE
Q 043978 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLD 411 (683)
Q Consensus 332 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 411 (683)
.+....+|+.|.+..|.+..++. ....+++|++|++..|.+..+|+-+.. -.
T Consensus 282 --ri~~~~~L~~l~~~~nel~yip~-----~le~~~sL~tLdL~~N~L~~lp~~~l~--------------v~------- 333 (1081)
T KOG0618|consen 282 --RISRITSLVSLSAAYNELEYIPP-----FLEGLKSLRTLDLQSNNLPSLPDNFLA--------------VL------- 333 (1081)
T ss_pred --HHhhhhhHHHHHhhhhhhhhCCC-----cccccceeeeeeehhccccccchHHHh--------------hh-------
Confidence 33445566666666666555532 122455666666666666555542211 00
Q ss_pred CCCCcccccCCCCCCCceEEeCCCCCCCccCC---CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC
Q 043978 412 LSNNFLTHIALHPWKNIRTLDLRNNKIQGSIL---VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP 488 (683)
Q Consensus 412 l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 488 (683)
...++.++.+.|++..... ...+.|+.|++.+|.+++...+.+.+.++|+.|+|++|++. .+|
T Consensus 334 -------------~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fp 399 (1081)
T KOG0618|consen 334 -------------NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFP 399 (1081)
T ss_pred -------------hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCC
Confidence 1123444444444432221 14567899999999999988889999999999999999998 888
Q ss_pred hhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccC-CccccCC
Q 043978 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTF-PCWLGSL 567 (683)
Q Consensus 489 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l 567 (683)
.......+.|+.|+||||+++.. |+....++.|++|...+|++. ..| .+..++.|+.+|+|.|+++... |... .-
T Consensus 400 as~~~kle~LeeL~LSGNkL~~L-p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~ 475 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTL-PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PS 475 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhh-hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CC
Confidence 87666666999999999999854 588889999999999999998 777 7999999999999999997643 3222 22
Q ss_pred CCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCC
Q 043978 568 PLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604 (683)
Q Consensus 568 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 604 (683)
++|++||++||.-.... ...+..+..+...++.-+
T Consensus 476 p~LkyLdlSGN~~l~~d--~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRLVFD--HKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccceeeccCCcccccc--hhhhHHhhhhhheecccC
Confidence 89999999999853221 123344556666666666
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-32 Score=273.06 Aligned_cols=182 Identities=24% Similarity=0.327 Sum_probs=143.8
Q ss_pred CCCCcEEEccCCccc-CCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLS-GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
+++|++|.+++.+-+ ..+|..+.++.+|..+|+|.|.+. .+|.++..+. +|+.|+||+|+|+.. ......-.+|++
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~iteL-~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKITEL-NMTEGEWENLET 272 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCceeee-eccHHHHhhhhh
Confidence 344455555554422 357788888999999999999998 8999999887 899999999998854 223334467999
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc-CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT-FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
|++|.|+++ .+|.++..+++|+.|++.+|+++-. +|.+++.+.+|+++..++|.+.- .| ..++.+..|+.|.+++
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VP--EglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VP--EGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-Cc--hhhhhhHHHHHhcccc
Confidence 999999998 7899999999999999999987643 78889999999999999998863 33 4668889999999999
Q ss_pred CcCCCCCcHHHHhcchhhcccccccceeeeccc
Q 043978 604 NEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGH 636 (683)
Q Consensus 604 n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~~~~ 636 (683)
|++. .+| +...-++.|..+|+..|+--...+
T Consensus 349 NrLi-TLP-eaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 349 NRLI-TLP-EAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccee-ech-hhhhhcCCcceeeccCCcCccCCC
Confidence 9997 688 557778999999998887555443
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-31 Score=266.26 Aligned_cols=365 Identities=25% Similarity=0.302 Sum_probs=295.9
Q ss_pred cccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCC
Q 043978 32 FRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLT 111 (683)
Q Consensus 32 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~ 111 (683)
+-++-+|-.|+++|.+++..+|.....+++++.|.|....+.. +|+.++.+.+|++|.+++|++.. +...++.++
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~----vhGELs~Lp 78 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLIS----VHGELSDLP 78 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHh----hhhhhccch
Confidence 3456688899999999977789999999999999999888764 58999999999999999998763 333457889
Q ss_pred CCCEEEcCCccCCc-CChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEE
Q 043978 112 KLSLLHLGSTNLSL-IKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLREL 189 (683)
Q Consensus 112 ~L~~L~L~~n~l~~-~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L 189 (683)
.||.+.+..|++.. -.|..+.++ ..|..||||+|++. +.|..+...+++-+|++++| .+...+. .+.++..|-.|
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhHHHhhhccccccCCCCchhccc-ccceeeecchhhhh-hcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhh
Confidence 99999999888733 236778888 99999999999998 68999999999999999998 4443333 67788889999
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcccc-ccCCccccCCCCCCEEEccCCcC
Q 043978 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT-GQLPHHVSGLLYLTNLDLFGNSL 268 (683)
Q Consensus 190 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l 268 (683)
+|++|.+. .+|..+..+..|++|++++|.+...-...+..+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 99999988 78889999999999999999877544455667888899999886543 46788899999999999999999
Q ss_pred cccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCC
Q 043978 269 QGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSN 348 (683)
Q Consensus 269 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 348 (683)
. .+|+.+..+++|+.|+|++|+|+........+.+|++|+++.|+++ .+|+ ++..++.|+.|.+.+
T Consensus 235 p-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~------------avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 235 P-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD------------AVCKLTKLTKLYANN 300 (1255)
T ss_pred C-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH------------HHhhhHHHHHHHhcc
Confidence 9 8999999999999999999999987766677889999999999998 6666 677789999999999
Q ss_pred CCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC--CCCC
Q 043978 349 NNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL--HPWK 426 (683)
Q Consensus 349 n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~ 426 (683)
|++. -.|.-.....+..|+.+..++|.+.-+|+.+ ..|..|+.|.++.|.+...+. .-++
T Consensus 301 NkL~---FeGiPSGIGKL~~Levf~aanN~LElVPEgl---------------cRC~kL~kL~L~~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 301 NKLT---FEGIPSGIGKLIQLEVFHAANNKLELVPEGL---------------CRCVKLQKLKLDHNRLITLPEAIHLLP 362 (1255)
T ss_pred Cccc---ccCCccchhhhhhhHHHHhhccccccCchhh---------------hhhHHHHHhcccccceeechhhhhhcC
Confidence 9843 2333344557778888888888888777765 667778888888877665543 2456
Q ss_pred CceEEeCCCCC
Q 043978 427 NIRTLDLRNNK 437 (683)
Q Consensus 427 ~L~~L~l~~n~ 437 (683)
.|+.||++.|+
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 66666666664
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-22 Score=229.97 Aligned_cols=335 Identities=20% Similarity=0.234 Sum_probs=252.4
Q ss_pred CccccCCCCCCEEEccCCcc------cccCCCCCCCCC-CCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 201 PYSIGNLLFLETVDITYCNF------MGSIPTSTGNLS-KATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 201 ~~~~~~l~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
+.+|.++++|+.|.+..+.. ...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 34678888898888865532 224566666654 6899999888776 456656 4688999999999887 567
Q ss_pred ccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCC-cc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN-LL 352 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~ 352 (683)
..+..+++|+.|+++++.....++.+..+++|+.|++++|.....+|. .+..+++|+.|++++|. ++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~------------si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS------------SIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch------------hhhccCCCCEEeCCCCCCcC
Confidence 777888999999998876555556677888999999998876666666 56778899999998864 44
Q ss_pred ccccccccccccCCCCccEEEcccCC-CCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC-CCCCceE
Q 043978 353 SFTSSGNIDIKYSLPSLLKLSFSNCN-VSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH-PWKNIRT 430 (683)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~~~-l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~ 430 (683)
.++. ...+++|+.|++++|. +..+|. ..++|+.|++++|.+..++.. .+++|+.
T Consensus 696 ~Lp~------~i~l~sL~~L~Lsgc~~L~~~p~------------------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 696 ILPT------GINLKSLYRLNLSGCSRLKSFPD------------------ISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred ccCC------cCCCCCCCEEeCCCCCCcccccc------------------ccCCcCeeecCCCcccccccccccccccc
Confidence 4432 2267889999999884 333332 235788899999988776543 5678888
Q ss_pred EeCCCCCCC----------ccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccE
Q 043978 431 LDLRNNKIQ----------GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLIT 500 (683)
Q Consensus 431 L~l~~n~l~----------~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~ 500 (683)
|++.++... ......+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... . .++|+.
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~ 829 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N-LESLES 829 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCE
Confidence 888764321 1112346789999999998888899999999999999999986555788765 3 459999
Q ss_pred EECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcC
Q 043978 501 LHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 501 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 580 (683)
|++++|......|.. .++|+.|++++|.++ .+|..+..+++|++|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 999998654344432 468999999999998 6788899999999999999654446777788899999999999974
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=227.95 Aligned_cols=336 Identities=19% Similarity=0.136 Sum_probs=232.5
Q ss_pred CCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCC-----CCCCcccCCCC-CCCEEeCCCCCCCCCCCcc
Q 043978 6 TGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLG-----SRISPEFGRLK-ELTYLNPSFSNFGGLVPSE 79 (683)
Q Consensus 6 ~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-----~~~~~~~~~l~-~L~~L~Ls~~~~~~~~~~~ 79 (683)
+.+|+.+.+.. ..+........+|..+++|++|.+..+.... ..+|..|..++ +|+.|.+.++.+... |..
T Consensus 531 ~~~v~~i~l~~--~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~l-P~~ 607 (1153)
T PLN03210 531 TKKVLGITLDI--DEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCM-PSN 607 (1153)
T ss_pred cceeeEEEecc--CccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCC-CCc
Confidence 55677665544 3333222233478999999999997654211 22566677764 699999999988655 666
Q ss_pred CcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCC
Q 043978 80 ISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLL 159 (683)
Q Consensus 80 ~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l 159 (683)
| ...+|++|+++++.+. .++..+..+++|+.|+++++......| .+..+ ++|++|++++|.....+|..+..+
T Consensus 608 f-~~~~L~~L~L~~s~l~----~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l-~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 608 F-RPENLVKLQMQGSKLE----KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMA-TNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred C-CccCCcEEECcCcccc----ccccccccCCCCCEEECCCCCCcCcCC-ccccC-CcccEEEecCCCCccccchhhhcc
Confidence 6 5789999999999876 344456789999999999876444434 47777 999999999987777889999999
Q ss_pred CCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeec
Q 043978 160 PNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILF 239 (683)
Q Consensus 160 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 239 (683)
++|+.|++++|..+. .+|....+++|+.|++++|.....+|.. ..+|+.|+++++.+. .+|..+ .+++|++|.+
T Consensus 681 ~~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 681 NKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred CCCCEEeCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence 999999999984444 4453337889999999998765555543 457889999998876 456554 5778888888
Q ss_pred cCccccc-------cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCC
Q 043978 240 ASNHLTG-------QLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312 (683)
Q Consensus 240 ~~n~l~~-------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~ 312 (683)
.++.... ..+......++|+.|++++|.....+|..++.+++|+.|++++|.....++....+++|+.|++++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~ 834 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG 834 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence 7643221 111122334678888888887666778888888888888888775433333333677778888877
Q ss_pred CcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccC
Q 043978 313 NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377 (683)
Q Consensus 313 n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 377 (683)
|.....+|. ..++|+.|++++|.++.+|. ....+++|+.|++++|
T Consensus 835 c~~L~~~p~---------------~~~nL~~L~Ls~n~i~~iP~-----si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 835 CSRLRTFPD---------------ISTNISDLNLSRTGIEEVPW-----WIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCccccccc---------------cccccCEeECCCCCCccChH-----HHhcCCCCCEEECCCC
Confidence 754433332 12467777777777665542 2335667777777765
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-24 Score=206.06 Aligned_cols=285 Identities=21% Similarity=0.154 Sum_probs=163.8
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCC-CcCccccCCHHHHHccCCCCCE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~-n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
-..++|..|.|+.+ -+.+|+.+++||.||||+|.|+.+.|.+|.++++|..|-+-+ |+++.... ..|.++..|+.
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---~~F~gL~slqr 144 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK---GAFGGLSSLQR 144 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh---hHhhhHHHHHH
Confidence 45677777777665 456677777777777777777777777777777766665544 66653222 22566777777
Q ss_pred EEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCc
Q 043978 116 LHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSD 195 (683)
Q Consensus 116 L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~ 195 (683)
|.+.-|++.-+..+.|..+ +++..|.+..|.+.......+..+..++.+.+..| .+.. ..+++.+... +
T Consensus 145 LllNan~i~Cir~~al~dL-~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n-p~ic----dCnL~wla~~-~---- 213 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDL-PSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN-PFIC----DCNLPWLADD-L---- 213 (498)
T ss_pred HhcChhhhcchhHHHHHHh-hhcchhcccchhhhhhccccccchhccchHhhhcC-cccc----ccccchhhhH-H----
Confidence 7777777777766777777 77777777777766443346666777777766665 2111 1111111110 0
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCCCCCCC-CCCCeeeccCccccccCC-ccccCCCCCCEEEccCCcCcccCC
Q 043978 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNL-SKATEILFASNHLTGQLP-HHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 196 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
...|..++......-..+.+.++....+..|... ..+.+=-.+.+...+..| ..|..+++|++|++++|+++.+-+
T Consensus 214 --a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 214 --AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred --hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0112222222223333333333332222222211 111111111222222222 456777777777777777777777
Q ss_pred ccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCC
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN 350 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 350 (683)
.+|.+...+++|.|..|++.... ..|.++..|+.|+|.+|+|+ .+...+|..+.+|.+|.+-.|.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it------------~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT------------TVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE------------EEecccccccceeeeeehccCc
Confidence 77777777777777777776533 23446777777777777776 3333466677777777776665
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.9e-21 Score=204.80 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=22.2
Q ss_pred CEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCc
Q 043978 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 259 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~ 316 (683)
..|+++.+.++ .+|..+. ++|+.|++.+|+++..+. .+++|++|++++|+++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT 255 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccC
Confidence 34444444444 3343332 244444444444443221 1244444444444444
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-24 Score=200.03 Aligned_cols=277 Identities=19% Similarity=0.156 Sum_probs=182.5
Q ss_pred CCCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCC-CCCCCCCCccCcCC
Q 043978 5 VTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSF-SNFGGLVPSEISHL 83 (683)
Q Consensus 5 ~~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~-~~~~~~~~~~~~~l 83 (683)
.+...+.++|.. +.|+ .+++ .+|..+++||.||||+|.|+.+ -|+.|..++.|..|-+.+ |+|+.+....|.++
T Consensus 65 LP~~tveirLdq--N~I~-~iP~-~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL 139 (498)
T KOG4237|consen 65 LPPETVEIRLDQ--NQIS-SIPP-GAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGL 139 (498)
T ss_pred CCCcceEEEecc--CCcc-cCCh-hhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence 356788899988 8887 3443 5999999999999999999887 788999999988877666 89999988999999
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCC------------
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN------------ 151 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~------------ 151 (683)
..|+.|.+.-|.+. -.....+..+++|..|.+..|.+..+...+|..+ ..++.+.+..|.+...
T Consensus 140 ~slqrLllNan~i~---Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 140 SSLQRLLLNANHIN---CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred HHHHHHhcChhhhc---chhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCccccccccchhhhHHhh
Confidence 99999999988877 3445568899999999999999988877788888 9999999988863211
Q ss_pred CCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEE--EC-CCCcCccccC-ccccCCCCCCEEEccCCcccccCCCC
Q 043978 152 FPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL--DL-SLSDFSGEIP-YSIGNLLFLETVDITYCNFMGSIPTS 227 (683)
Q Consensus 152 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L--~L-~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 227 (683)
.|..++......-..+.+. ......+ -.....++.+ .+ +.+......| ..|..+++|+.|++++|+++..-+.+
T Consensus 216 ~~ietsgarc~~p~rl~~~-Ri~q~~a-~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYK-RINQEDA-RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred chhhcccceecchHHHHHH-Hhcccch-hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 1111111111111111111 1111000 0000011111 11 1111111222 24566666666666666666666666
Q ss_pred CCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcc
Q 043978 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 228 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 292 (683)
|.....+++|.+..|++.......|.++..|+.|++.+|+|+...|.+|..+..|.+|.+-.|.+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666666666666666655556666666666666666666666666666666666666665544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=203.49 Aligned_cols=262 Identities=25% Similarity=0.303 Sum_probs=132.4
Q ss_pred CeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCc
Q 043978 235 TEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 235 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~ 314 (683)
..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|+.|++++|+++..+. ..++|+.|++++|.
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC---cccccceeeccCCc
Confidence 34444444444 2333332 24555555555554 2332 13455555555555553321 12455555555555
Q ss_pred CcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhcccccc
Q 043978 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHG 394 (683)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~ 394 (683)
+. .+|. ..++|+.|++++|+++.++. .+++|+.|++++|++..+|..
T Consensus 274 L~-~Lp~---------------lp~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS~N~L~~Lp~l--------- 320 (788)
T PRK15387 274 LT-HLPA---------------LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASLPAL--------- 320 (788)
T ss_pred hh-hhhh---------------chhhcCEEECcCCccccccc--------cccccceeECCCCccccCCCC---------
Confidence 54 1221 11345555666665544432 134556666666555554421
Q ss_pred ccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCC
Q 043978 395 RISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLK 474 (683)
Q Consensus 395 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 474 (683)
...|+.|++++|.++.++. ...+|+.|++++|++++. +..+++|+.|++++|.+.. +|.. ..+|+
T Consensus 321 ---------p~~L~~L~Ls~N~L~~LP~-lp~~Lq~LdLS~N~Ls~L-P~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~ 385 (788)
T PRK15387 321 ---------PSELCKLWAYNNQLTSLPT-LPSGLQELSVSDNQLASL-PTLPSELYKLWAYNNRLTS-LPAL---PSGLK 385 (788)
T ss_pred ---------cccccccccccCccccccc-cccccceEecCCCccCCC-CCCCcccceehhhcccccc-Cccc---ccccc
Confidence 1234555555555554332 123456666666665532 2234455556666665553 3332 23566
Q ss_pred EEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 475 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
.|++++|++. .+|.. +++|+.|++++|+++++ |.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus 386 ~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 386 ELIVSGNRLT-SLPVL----PSELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred eEEecCCccc-CCCCc----ccCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 6666666665 45432 23566666666666643 322 235666666666666 45666666666666777666
Q ss_pred cCCccCCccc
Q 043978 555 MINDTFPCWL 564 (683)
Q Consensus 555 ~l~~~~~~~l 564 (683)
++++..+..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 6665544444
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-19 Score=195.63 Aligned_cols=141 Identities=21% Similarity=0.327 Sum_probs=68.6
Q ss_pred cCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC
Q 043978 406 SLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~ 485 (683)
+|+.|++++|+++.++....++|+.|++++|.++......+++|+.|++++|.++. +|..+. ++|+.|++++|++.
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT- 359 (754)
T ss_pred CCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-
Confidence 34444554444444332222344445555554443222233445555555555543 333332 45666666666665
Q ss_pred CCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhh----hcCCCCcEEEccCCcCC
Q 043978 486 TIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL----AKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 486 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~ 557 (683)
.+|..+. ++|+.|++++|+++..+ ..+. ..|+.|++++|+++ .+|..+ ..++.+..|++.+|++.
T Consensus 360 ~LP~~lp---~~L~~LdLs~N~Lt~LP-~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 360 VLPETLP---PTITTLDVSRNALTNLP-ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCChhhc---CCcCEEECCCCcCCCCC-HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4554332 35666666666665432 2222 24666666666665 333322 22355666666666654
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=190.63 Aligned_cols=249 Identities=23% Similarity=0.296 Sum_probs=160.7
Q ss_pred CCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCc
Q 043978 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEF 382 (683)
Q Consensus 303 ~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 382 (683)
.+...|+++++.++ .+|. .+ .+.|+.|++++|+++.++.. .+++|+.|++++|.++.+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~------------~I--p~~L~~L~Ls~N~LtsLP~~-------l~~nL~~L~Ls~N~LtsL 235 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPA------------CI--PEQITTLILDNNELKSLPEN-------LQGNIKTLYANSNQLTSI 235 (754)
T ss_pred cCceEEEeCCCCcC-cCCc------------cc--ccCCcEEEecCCCCCcCChh-------hccCCCEEECCCCccccC
Confidence 45678888888777 3443 12 24688888888887776532 235788888888888777
Q ss_pred ChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCC
Q 043978 383 PSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQ 462 (683)
Q Consensus 383 p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~ 462 (683)
|..+ .++|+.|++++|.+..++.....+|+.|++++|+++......+++|+.|++++|++..
T Consensus 236 P~~l-----------------~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~- 297 (754)
T PRK15370 236 PATL-----------------PDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT- 297 (754)
T ss_pred Chhh-----------------hccccEEECcCCccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCcccc-
Confidence 6532 2467888888888876654444578888888887775333344577777777777774
Q ss_pred CCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhc
Q 043978 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542 (683)
Q Consensus 463 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 542 (683)
+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+ |..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred Ccccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCccccC-Chhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 343332 36777777777776 4554432 3777777777777653 33332 57777777777776 4555443
Q ss_pred CCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCc--cccCCCCCcEEeCCCCcCC
Q 043978 543 CVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSI--TTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 543 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~ls~n~~~ 607 (683)
++|++|++++|.++. +|..+. .+|+.|++++|++.. +|... ....++.+..+++.+|+++
T Consensus 367 -~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 -PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 467777777777763 444443 357777777777763 23211 1223466777777777775
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-18 Score=176.55 Aligned_cols=130 Identities=20% Similarity=0.121 Sum_probs=62.2
Q ss_pred eeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CCccCcCCCCCCEEeCCCCcCcc---ccCCHHHHHccCCC
Q 043978 40 LNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGL----VPSEISHLSKLTHLGLSCRVLTI---EQRTFDLLASNLTK 112 (683)
Q Consensus 40 L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~ls~n~~~~---~~~~~~~~~~~l~~ 112 (683)
|+|.++.+++......+..+.+|++|+++++.++.. ++..+...++|++++++++.+.. ....++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444444333333444445555555555554322 23333444555555555544321 00122334455666
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCC---ccEEEcCCCcCCCC----CCccCCCC-CCCcEEEccCC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSST---MTDLDLSGTRIQGN----FPDQIFLL-PNLRVLYLCGN 170 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~---L~~L~l~~n~i~~~----~~~~l~~l-~~L~~L~l~~n 170 (683)
|++|++++|.+....+..+..+ .. |++|++++|++.+. +...+..+ ++|+.|++++|
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l-~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n 147 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESL-LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN 147 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHH-hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC
Confidence 6666666666654444444444 33 66666666665521 11223344 55555555555
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-18 Score=173.25 Aligned_cols=203 Identities=22% Similarity=0.232 Sum_probs=131.4
Q ss_pred EEECCCCCCCcc-eeecCCCcccccccCCeeeCCCCCCCCC---CCCcccCCCCCCCEEeCCCCCCCC------CCCccC
Q 043978 11 GLDLHGSCSWLR-GTIDDNSTLFRLSHLQSLNLAFNNFLGS---RISPEFGRLKELTYLNPSFSNFGG------LVPSEI 80 (683)
Q Consensus 11 ~L~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~Ls~~~~~~------~~~~~~ 80 (683)
.|+|.+ ..++ ..+.. .+..+++|+.|+++++.+... .++..+...+.+++++++++.+.+ .++..+
T Consensus 2 ~l~L~~--~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l 77 (319)
T cd00116 2 QLSLKG--ELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77 (319)
T ss_pred cccccc--CcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH
Confidence 466766 6665 33444 567888899999999987432 134456777889999999988763 234567
Q ss_pred cCCCCCCEEeCCCCcCccccCCHHHHHccC---CCCCEEEcCCccCCcCC----hhhhhcCcCCccEEEcCCCcCCCC--
Q 043978 81 SHLSKLTHLGLSCRVLTIEQRTFDLLASNL---TKLSLLHLGSTNLSLIK----PFSLLNLSSTMTDLDLSGTRIQGN-- 151 (683)
Q Consensus 81 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~----~~~l~~l~~~L~~L~l~~n~i~~~-- 151 (683)
.++++|++|++++|.+.. ..+..+..+ ++|++|++++|.+++.. ...+..++++|++|++++|.+++.
T Consensus 78 ~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 78 TKGCGLQELDLSDNALGP---DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HhcCceeEEEccCCCCCh---hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 788999999999998762 233333344 45999999999887432 223444447899999999998843
Q ss_pred --CCccCCCCCCCcEEEccCCCCCccc-C----CCCCCCCCCCEEECCCCcCccc----cCccccCCCCCCEEEccCCcc
Q 043978 152 --FPDQIFLLPNLRVLYLCGNIHLTGY-L----PKCNWSSPLRELDLSLSDFSGE----IPYSIGNLLFLETVDITYCNF 220 (683)
Q Consensus 152 --~~~~l~~l~~L~~L~l~~n~~~~~~-~----~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~ 220 (683)
++..+..+++|++|++++| .+.+. . ..+...++|++|++++|.+.+. +...+..+++|++|++++|.+
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 155 EALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 2334556677888888877 44321 0 1233345666666666665422 222344455566666665554
Q ss_pred c
Q 043978 221 M 221 (683)
Q Consensus 221 ~ 221 (683)
.
T Consensus 234 ~ 234 (319)
T cd00116 234 T 234 (319)
T ss_pred c
Confidence 4
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-16 Score=133.24 Aligned_cols=159 Identities=27% Similarity=0.437 Sum_probs=129.7
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
.+..++.|.+++|+++ ..|..+..+.+|+.|++++|++. .+|..+..++ +|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~-klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLP-KLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhch-hhhheecchhhhh-cCccccCCCchhhh
Confidence 3556778888888888 56777888888999999999987 7888888876 8899999888886 67888888999999
Q ss_pred EEcCCCccc-ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 525 FDLNCNKFE-GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 525 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
||+++|.+. ..+|+.|..++.|+.|++++|.+. .+|..++.+++|+.|.+++|.+.. +| ...+.+..|++|.+.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lp--keig~lt~lrelhiqg 182 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LP--KEIGDLTRLRELHIQG 182 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-Cc--HHHHHHHHHHHHhccc
Confidence 999988876 357888888888999999999886 677788889999999999988763 33 3456788888899999
Q ss_pred CcCCCCCcH
Q 043978 604 NEFKDFLPR 612 (683)
Q Consensus 604 n~~~~~~p~ 612 (683)
|+++ ++|.
T Consensus 183 nrl~-vlpp 190 (264)
T KOG0617|consen 183 NRLT-VLPP 190 (264)
T ss_pred ceee-ecCh
Confidence 9988 5664
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-17 Score=137.26 Aligned_cols=158 Identities=25% Similarity=0.392 Sum_probs=117.4
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc-cccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-HIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 524 (683)
+.+|+.|++++|++. ..|..++.++.|+.|+++-|++. .+|.+|..++ .|+.||+++|++.+ ..|..|-.++.|+.
T Consensus 55 l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhhhhhccccccccccCCcchhHHHHHHH
Confidence 334444555555555 57778888889999999888887 7888888876 89999999888764 46778888888999
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCC
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 604 (683)
|++++|.+. .+|...+++++|+.|.+.+|.+. .+|..++.+++|+.|++.+|+++...|+-....-..+=+...+.+|
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~N 209 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEEN 209 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhC
Confidence 999999987 77888899999999999999887 5888888999999999999998755442211111112234455667
Q ss_pred cCCC
Q 043978 605 EFKD 608 (683)
Q Consensus 605 ~~~~ 608 (683)
++..
T Consensus 210 Pwv~ 213 (264)
T KOG0617|consen 210 PWVN 213 (264)
T ss_pred CCCC
Confidence 6653
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-14 Score=139.00 Aligned_cols=193 Identities=27% Similarity=0.373 Sum_probs=148.4
Q ss_pred cEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCC
Q 043978 450 EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529 (683)
Q Consensus 450 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 529 (683)
...+++.|++. .+|..++.+..|+.+.+.+|.+. .+|.++..+. .|+.|+++.|+++.. |..+..++ |+.|-+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~-~lt~l~ls~NqlS~l-p~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE-ALTFLDLSSNQLSHL-PDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh-HHHHhhhccchhhcC-ChhhhcCc-ceeEEEec
Confidence 34455555555 67777888888888888888887 7888888776 888889988888744 44444444 88889999
Q ss_pred CcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCC
Q 043978 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 530 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 609 (683)
|+++ .+|..++...+|..||.+.|.+. .+|..++.+.+|+.|.++.|++....+ .+..+ .|..||+|.|++. .
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~---El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPE---ELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCH---HHhCC-ceeeeecccCcee-e
Confidence 9987 67878888889999999999987 567778889999999999999875433 22333 4788999999998 7
Q ss_pred CcHHHHhcchhhcccccccceeeeccccceeeEEEEEEeccEEEEeeeeeeEE
Q 043978 610 LPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESVTVAMKGHDFQLYMLNLDQI 662 (683)
Q Consensus 610 ~p~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (683)
+| -.|.+|..|+.+.|.+|+++.- ..++++||.-..|.|+...+-
T Consensus 226 iP-v~fr~m~~Lq~l~LenNPLqSP-------PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LP-VDFRKMRHLQVLQLENNPLQSP-------PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cc-hhhhhhhhheeeeeccCCCCCC-------hHHHHhccceeeeeeecchhc
Confidence 88 6799999999999999988553 446778888777777754443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-12 Score=124.26 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=47.3
Q ss_pred CCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCcccCCCCcc-----ccC
Q 043978 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGPLCKSIT-----TFS 592 (683)
Q Consensus 519 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~ 592 (683)
+++|+.|++..|............+..|++|||++|++.+... ...+.++.|+.|+++.|.+...-. ... ...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~-~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAE-PDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcC-CCccchhhhcc
Confidence 4444455554442211222223334445555555555443221 123345555555555555432210 000 123
Q ss_pred CCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 593 FQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 593 l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
+++|++|+++.|+|.+.---.....+++|+++....|++.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 4556666666666643222222333444455554444443
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-11 Score=109.47 Aligned_cols=124 Identities=21% Similarity=0.258 Sum_probs=37.7
Q ss_pred cccEEECCCCccccccccccc-CCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc-cCCCCCCEEE
Q 043978 497 QLITLHLKNNSLEGHIHDTFE-NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL-GSLPLLKILI 574 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ 574 (683)
++++|+|++|+|+.+ +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.|++.. +.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence 455555555555433 2232 345556666666665532 23555566666666666665432 223 2456666666
Q ss_pred ccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc--HHHHhcchhhccccc
Q 043978 575 LRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP--RRNFTSMEAMKNVDE 626 (683)
Q Consensus 575 l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p--~~~~~~~~~L~~l~l 626 (683)
+++|++.... .-..+..+++|+.|++.+|++...-. ...+..+++|+.||-
T Consensus 95 L~~N~I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6666654322 12334456667777777777653211 235667778887774
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-11 Score=104.54 Aligned_cols=79 Identities=28% Similarity=0.267 Sum_probs=23.3
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccC-chhhhcCCCCcEEEccCCcCCccCC---ccccCCCCCCE
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSL-PRSLAKCVKLEVVNVGNNMINDTFP---CWLGSLPLLKI 572 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~ 572 (683)
.|++|++++|+|+...+.....+++|+.|++++|++.... -..+..+++|++|++.+|++++..- ..+..+|+|+.
T Consensus 65 ~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 65 RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 4444444444444332211123444444444444443221 1334455555555555555543211 12334555655
Q ss_pred EEc
Q 043978 573 LIL 575 (683)
Q Consensus 573 L~l 575 (683)
||-
T Consensus 145 LD~ 147 (175)
T PF14580_consen 145 LDG 147 (175)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-12 Score=120.63 Aligned_cols=226 Identities=23% Similarity=0.217 Sum_probs=121.4
Q ss_pred cccccccCCeeeCCCCCCCCCC---CCcccCCCCCCCEEeCCCCCCCCC----CCc-------cCcCCCCCCEEeCCCCc
Q 043978 30 TLFRLSHLQSLNLAFNNFLGSR---ISPEFGRLKELTYLNPSFSNFGGL----VPS-------EISHLSKLTHLGLSCRV 95 (683)
Q Consensus 30 ~l~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~----~~~-------~~~~l~~L~~L~ls~n~ 95 (683)
.+..+..++.++||+|.+.... +...+.+.++|+..++|+- ++|. +|. ++..+++|++||||.|.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3446677888888888874321 2234666778888888753 2222 232 33456678888888776
Q ss_pred Ccccc-CCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCc
Q 043978 96 LTIEQ-RTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLT 174 (683)
Q Consensus 96 ~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 174 (683)
+.... ..+...++++..|++|.|.+|.+.......++. .|.+|.. ....+.-++|+++...+| ++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~~---------~kk~~~~~~Lrv~i~~rN-rle 170 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELAV---------NKKAASKPKLRVFICGRN-RLE 170 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHHH---------HhccCCCcceEEEEeecc-ccc
Confidence 65221 244555677777777777777665544333332 2222220 012233456666666666 332
Q ss_pred ccCC-----CCCCCCCCCEEECCCCcCcc----ccCccccCCCCCCEEEccCCccccc----CCCCCCCCCCCCeeeccC
Q 043978 175 GYLP-----KCNWSSPLRELDLSLSDFSG----EIPYSIGNLLFLETVDITYCNFMGS----IPTSTGNLSKATEILFAS 241 (683)
Q Consensus 175 ~~~~-----~~~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~ 241 (683)
.... .+..++.|+.+.++.|.+.. .+...+..+++|+.||+.+|.++.. +...++.+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2111 34445566666666665532 1223456677777777777766532 233344455666666666
Q ss_pred ccccccCCccc-----cCCCCCCEEEccCCcCc
Q 043978 242 NHLTGQLPHHV-----SGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 242 n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~ 269 (683)
|.+......++ ...++|+.|.+.+|.|+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 65544332222 12345555555555544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-11 Score=119.54 Aligned_cols=209 Identities=22% Similarity=0.201 Sum_probs=104.7
Q ss_pred CCCCCEEeCCCCCCCCCCC-ccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCC
Q 043978 59 LKELTYLNPSFSNFGGLVP-SEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST 137 (683)
Q Consensus 59 l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 137 (683)
+++|+.+.|.++.+..... .....|++++.||||.|-+..- ..+...+..+++|+.|+++.|.+..-.........+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4455555555544432211 2334455555555555533211 1222334455555555555555433222222222255
Q ss_pred ccEEEcCCCcCCCC-CCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccC--ccccCCCCCCEEE
Q 043978 138 MTDLDLSGTRIQGN-FPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIP--YSIGNLLFLETVD 214 (683)
Q Consensus 138 L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~ 214 (683)
|+.|.+++|.++.. +...+..+|+|+.|+++.|...........-++.|+.|+|++|.+.. .+ .....++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 66666666655521 11123355666666666652111111133344556666666666542 22 3445666677777
Q ss_pred ccCCcccccC-CCC-----CCCCCCCCeeeccCcccccc-CCccccCCCCCCEEEccCCcCc
Q 043978 215 ITYCNFMGSI-PTS-----TGNLSKATEILFASNHLTGQ-LPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 215 l~~~~~~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++.+.+...- |+. ...+++|+.|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7666665421 222 23467778888877777432 2234556677777777777765
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-11 Score=112.72 Aligned_cols=198 Identities=20% Similarity=0.130 Sum_probs=113.6
Q ss_pred cCCCcCcEEECCCCcccccCC--CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCc---ccCCCCccccCCCCCCEE
Q 043978 402 KGWKSLIDLDLSNNFLTHIAL--HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNK---LSGQIPPYICSLSSLKYL 476 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~---i~~~~~~~l~~l~~L~~L 476 (683)
..+.+|..+.++.|.-..+.- ..-+.|.++......+.... ...|.-...+..... ..|........++.|+++
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccc-cccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 455677777777775433311 12244666655554433211 111111111111110 111112223345667788
Q ss_pred EcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 477 ~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
|+|+|.|+ .+..++.-. +.++.|++++|.|..+ +.+..+++|+.||||+|.++. ..+.=..+-+.++|.++.|.+
T Consensus 290 DLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 290 DLSGNLIT-QIDESVKLA-PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred cccccchh-hhhhhhhhc-cceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhH
Confidence 88888776 565555433 4778888888877654 336667778888888887763 333334566677778888777
Q ss_pred CccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 557 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
.+. .+++.+-+|..||+++|+|..... ....+++|.|+++.+.+|++.+
T Consensus 365 E~L--SGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 365 ETL--SGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhh--hhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccc
Confidence 543 446677777778888887754322 2355677777777777777774
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.8e-12 Score=125.83 Aligned_cols=171 Identities=29% Similarity=0.383 Sum_probs=83.9
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC--CCCCceEEeCCCCCCCccCC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH--PWKNIRTLDLRNNKIQGSIL 443 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~~~ 443 (683)
+.--...+++.|++.++|..+ ..|-.|+.+.+..|.+..++.. .+..|..+|++.|++.....
T Consensus 74 ltdt~~aDlsrNR~~elp~~~---------------~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~ 138 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEA---------------CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD 138 (722)
T ss_pred ccchhhhhccccccccCchHH---------------HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh
Confidence 333445556666665555432 3344455555555555544332 44555556666665542221
Q ss_pred C-CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCc
Q 043978 444 V-PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522 (683)
Q Consensus 444 ~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 522 (683)
. ..--|+.|-+++|+++ .+|..++..+.|..|+.+.|.+. .+|..+..+. +|+.|.++.|++...+++ +. .-.|
T Consensus 139 ~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~~lp~E-l~-~LpL 213 (722)
T KOG0532|consen 139 GLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLEDLPEE-LC-SLPL 213 (722)
T ss_pred hhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhhhCCHH-Hh-CCce
Confidence 1 1122344444444444 34444555555555555555554 4555554444 555555555555433222 22 2235
Q ss_pred cEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 523 QSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 523 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
..||+++|+++ .+|-.|..+..|++|-|.+|++.
T Consensus 214 i~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 214 IRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 55555555554 44555555555555555555554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=117.96 Aligned_cols=86 Identities=29% Similarity=0.470 Sum_probs=41.2
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
..|++|.+++|++. ..+..+.... ++..+.+.+|++... +..+..+++++.|++++|+++...+ +..+.+++.|+
T Consensus 209 ~~L~~l~~~~N~~~-~~~~~~~~~~-~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 209 SALEELDLSNNSII-ELLSSLSNLK-NLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhcCCcce-ecchhhhhcc-cccccccCCceeeec-cchhccccccceecccccccccccc--ccccCccCEEe
Confidence 33555555555332 3333344333 455555555554421 3344445555555555555553322 55555555555
Q ss_pred ccCCcCCccCC
Q 043978 551 VGNNMINDTFP 561 (683)
Q Consensus 551 l~~n~l~~~~~ 561 (683)
+++|.+....+
T Consensus 284 ~s~n~~~~~~~ 294 (394)
T COG4886 284 LSGNSLSNALP 294 (394)
T ss_pred ccCccccccch
Confidence 55555554433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=119.12 Aligned_cols=176 Identities=35% Similarity=0.469 Sum_probs=93.9
Q ss_pred CcCcEEECCCCcccccCCC--CCC-CceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCC
Q 043978 405 KSLIDLDLSNNFLTHIALH--PWK-NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~--~~~-~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n 481 (683)
+.++.+++.+|.++.+... ... +|+.|++++|.+.. +|..+..++.|+.|++++|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~----------------------l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES----------------------LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh----------------------hhhhhhccccccccccCCc
Confidence 5566666666666665443 221 56666666655553 3344555566666666666
Q ss_pred cCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC
Q 043978 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561 (683)
Q Consensus 482 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 561 (683)
++. .+|....... .|+.|++++|++.... ........|+++++++|+.. ..+..+..+.++..+.+.+|++.. .+
T Consensus 174 ~l~-~l~~~~~~~~-~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLS-NLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred hhh-hhhhhhhhhh-hhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence 665 4444332222 5666666666665332 22233344666666666433 334455555666666666666543 24
Q ss_pred ccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 562 CWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
..++.++++++|++++|.++...+ ...+..++.+|+++|.+....|
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~----~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS----LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccccccc----ccccCccCEEeccCccccccch
Confidence 445556666666666666553321 3455566666666666654443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-12 Score=119.98 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=16.6
Q ss_pred CCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcC
Q 043978 520 SNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 556 (683)
++|+.|.+.+|.++.. +..+....+.|..|+|++|++
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4455555555544421 112233344555555555555
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-11 Score=110.76 Aligned_cols=137 Identities=23% Similarity=0.267 Sum_probs=104.1
Q ss_pred CCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEE
Q 043978 229 GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEV 308 (683)
Q Consensus 229 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L 308 (683)
.....|+++++++|.|+ .+.++..-.|.++.|++++|.+... ..+..+++|+.||+++|.++....+-..+-+++.|
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34567888999998887 4455667778899999999988733 23777899999999999887655555578889999
Q ss_pred ECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChh
Q 043978 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385 (683)
Q Consensus 309 ~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~ 385 (683)
.+++|.+.. ...+..+-+|..||+++|+|+.+.. ......+|.|+.+.+.+|.+..+|+.
T Consensus 358 ~La~N~iE~--------------LSGL~KLYSLvnLDl~~N~Ie~lde---V~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 358 KLAQNKIET--------------LSGLRKLYSLVNLDLSSNQIEELDE---VNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred ehhhhhHhh--------------hhhhHhhhhheeccccccchhhHHH---hcccccccHHHHHhhcCCCccccchH
Confidence 999998761 1135667788999999999777633 24456889999999999988877653
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=118.29 Aligned_cols=107 Identities=26% Similarity=0.464 Sum_probs=59.9
Q ss_pred CCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 473 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
++.|+|++|.+.+.+|..+..+. +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 45555566555555555555443 55556665555555555555555555555555555555555555555555555555
Q ss_pred CCcCCccCCccccCC-CCCCEEEccCCcC
Q 043978 553 NNMINDTFPCWLGSL-PLLKILILRSNRF 580 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~l 580 (683)
+|.+++.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 555555555554432 3444555555543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-09 Score=115.75 Aligned_cols=114 Identities=27% Similarity=0.376 Sum_probs=79.5
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++.+.+|.... .....+..+++++|+..+-.|
T Consensus 499 ~N~l~g~iP~~l~-~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHh-hccccCceEEecCCccccCCC
Confidence 7777776664321 122345667777776655444
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-09 Score=79.62 Aligned_cols=59 Identities=32% Similarity=0.461 Sum_probs=29.5
Q ss_pred CccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCc
Q 043978 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 521 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
+|+.|++++|+++...+..|..+++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34455555555544444445555555555555555544444445555555555555544
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-10 Score=121.38 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=36.4
Q ss_pred ccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc---CCcc-ccCCCCCCEE
Q 043978 498 LITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT---FPCW-LGSLPLLKIL 573 (683)
Q Consensus 498 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~-l~~l~~L~~L 573 (683)
|+.+++++|++.... ..+..+..+..|++.+|++... ..+...+.+..+....|.+... .... ....+.++..
T Consensus 234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 455555555544221 3344445555555555555422 1233344455555555544321 1111 2344555555
Q ss_pred EccCCcCc
Q 043978 574 ILRSNRFY 581 (683)
Q Consensus 574 ~l~~n~l~ 581 (683)
.+.+|++.
T Consensus 311 ~~~~~~~~ 318 (414)
T KOG0531|consen 311 TLELNPIR 318 (414)
T ss_pred ccccCccc
Confidence 55555554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-10 Score=123.54 Aligned_cols=317 Identities=22% Similarity=0.163 Sum_probs=177.6
Q ss_pred cEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCC--CCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCC
Q 043978 8 NVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNN--FLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSK 85 (683)
Q Consensus 8 ~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 85 (683)
.++++.+-+ +.+.. +.. -..++.|++|-+.+|. +... ..+.|..++.|++|||++|.-.+.+|..++.+-+
T Consensus 524 ~~rr~s~~~--~~~~~-~~~---~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 524 SVRRMSLMN--NKIEH-IAG---SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred heeEEEEec--cchhh-ccC---CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 455565555 44431 221 2344578888888775 3332 3345788888888888887766778888888888
Q ss_pred CCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCC--CCCCccCCCCCCCc
Q 043978 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ--GNFPDQIFLLPNLR 163 (683)
Q Consensus 86 L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~--~~~~~~l~~l~~L~ 163 (683)
||+|++++..+. .+|..++++++|.+|++..+.-....+.....+ ++|++|.+...... ...-..+..+.+|+
T Consensus 597 LryL~L~~t~I~----~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L-~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 597 LRYLDLSDTGIS----HLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL-QSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhcccccCCCcc----ccchHHHHHHhhheeccccccccccccchhhhc-ccccEEEeeccccccchhhHHhhhcccchh
Confidence 888888888775 677778888888888888766544446666667 88888888665422 11223345556666
Q ss_pred EEEccCCCCCcccCCCCCCCCCCC----EEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCC------CCC
Q 043978 164 VLYLCGNIHLTGYLPKCNWSSPLR----ELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGN------LSK 233 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~~~~L~----~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~ 233 (683)
.+..... .. .....+.....|+ .+.+.++... ..+..+..+.+|+.|.+.++.+.......... +++
T Consensus 672 ~ls~~~~-s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 672 NLSITIS-SV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hheeecc-hh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 6655433 11 1111222222222 3332222222 44556777888888888888776433322211 223
Q ss_pred CCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCc--CCCCCCCCCCcEEECC
Q 043978 234 ATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP--IDGFQSPNSLEEVHLE 311 (683)
Q Consensus 234 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~L~ 311 (683)
+..+.+.++... ..+.+..-.++|+.|.+..+.....+......+..+..+.+..+.+... ......++.+..+.+.
T Consensus 749 l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 749 LSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred HHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 333333333322 2233334557888888888876655555555555565555555544432 2222333444333333
Q ss_pred CCcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 312 KNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 312 ~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
.-.+.....+. ......+|.+.++.+.++
T Consensus 828 ~~~l~~~~ve~---------~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 828 FLKLEELIVEE---------CPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred ccchhheehhc---------CcccccCccccccceecc
Confidence 32221100000 012455777777777775
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=79.19 Aligned_cols=60 Identities=28% Similarity=0.463 Sum_probs=49.5
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
+|++|++++|+++.+.+++|.++++|+.|++++|.++...|.+|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 678888888888877778888888888888888888877777888888888888888865
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-09 Score=121.16 Aligned_cols=271 Identities=20% Similarity=0.223 Sum_probs=176.0
Q ss_pred ccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCC--CCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccC
Q 043978 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSN--FGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNL 110 (683)
Q Consensus 33 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l 110 (683)
.....|...+-+|.+... +. -...++|++|-+.+|. +..+.++.|..++.|++||+++|.-- ..+|..++++
T Consensus 521 ~~~~~rr~s~~~~~~~~~--~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l---~~LP~~I~~L 594 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI--AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL---SKLPSSIGEL 594 (889)
T ss_pred chhheeEEEEeccchhhc--cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc---CcCChHHhhh
Confidence 345678888877776433 22 2344579999888886 56565666889999999999987543 6789999999
Q ss_pred CCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCccc---CCCCCCCCCCC
Q 043978 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGY---LPKCNWSSPLR 187 (683)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~ 187 (683)
-+||+|+++++.+... |..+.++ ..|.+|++..+.-...+|.....+++|++|.+... ..... ...+..+.+|+
T Consensus 595 i~LryL~L~~t~I~~L-P~~l~~L-k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s-~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHL-PSGLGNL-KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS-ALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhhcccccCCCcccc-chHHHHH-HhhheeccccccccccccchhhhcccccEEEeecc-ccccchhhHHhhhcccchh
Confidence 9999999999999866 8899999 99999999988766566777778999999999765 21111 11445556666
Q ss_pred EEECCCCcCccccCccccCCCCCC----EEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccC------CCC
Q 043978 188 ELDLSLSDFSGEIPYSIGNLLFLE----TVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSG------LLY 257 (683)
Q Consensus 188 ~L~L~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~ 257 (683)
.+....... .+...+..++.|. .+.+.++.. ...+..+..+.+|+.|.+.++.+......+... +++
T Consensus 672 ~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~ 748 (889)
T KOG4658|consen 672 NLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPN 748 (889)
T ss_pred hheeecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHH
Confidence 665543332 1111222333333 222222222 245667788999999999999886543333221 223
Q ss_pred CCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC-cCCCCCCCCCCcEEECCCCcCc
Q 043978 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 258 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~L~~L~L~~n~i~ 316 (683)
+..+.+.++... ..+.+....++|+.|.+..+.... .++....+..++++.+..+.+.
T Consensus 749 l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 749 LSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred HHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 333334444322 233334457899999999987655 3444345555665555555554
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-10 Score=118.27 Aligned_cols=200 Identities=24% Similarity=0.249 Sum_probs=123.3
Q ss_pred CCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccCC-CCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcC
Q 043978 403 GWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSIL-VPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLS 479 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls 479 (683)
.+++|+.|++++|.|+.+. ...++.|+.|++++|.|....- ..+..|+.+++++|.+....+ . ...+.+++.++++
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLG 194 (414)
T ss_pred hhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence 3444444444444444442 2233445555555555543221 125555666666666654433 2 5677888889999
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCC--ccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASN--IQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
+|.+.. + ..+.... .+..+++..|.++...+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|.+.
T Consensus 195 ~n~i~~-i-~~~~~~~-~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 195 GNSIRE-I-EGLDLLK-KLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred CCchhc-c-cchHHHH-HHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 998862 2 2222222 55566888888775422 222333 899999999987 34466778888999999999887
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCCC--ccccCCCCCcEEeCCCCcCCCCCc
Q 043978 558 DTFPCWLGSLPLLKILILRSNRFYGPLCKS--ITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
.. ..+...+.+..+....|++....... ......+.++.+.+..|++....+
T Consensus 269 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 269 NL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 54 33567788888888888876332111 124566788889999998876554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-09 Score=112.73 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=101.2
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc-ccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW-LGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l 575 (683)
.|.+.+.++|.+.. ...++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.++. +|.. ...+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence 57778888888873 345667778999999999999854 378889999999999999974 4442 22444 999999
Q ss_pred cCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccccee
Q 043978 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRL 631 (683)
Q Consensus 576 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~ 631 (683)
++|.++.. ....++.+|+.||+++|-+.+.-.-..+..+..|+.|.+.+|++
T Consensus 240 rnN~l~tL----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99998754 34578899999999999998876666788889999999999987
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-09 Score=100.89 Aligned_cols=178 Identities=18% Similarity=0.082 Sum_probs=84.6
Q ss_pred CCCEEeCCCCCCCCC-CCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCcc-CCcCChh-hhhcCcCC
Q 043978 61 ELTYLNPSFSNFGGL-VPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTN-LSLIKPF-SLLNLSST 137 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~~ 137 (683)
.|++||||...++.. .-..++.|.+|+.|.+.++.+. ..+...+++-.+|+.|+++.+. ++..... .+..+ +.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc-s~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC-SR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---cHHHHHHhccccceeeccccccccchhHHHHHHHhh-hh
Confidence 355555555444322 1122344555555555555443 3344444555555555555432 2222111 12333 55
Q ss_pred ccEEEcCCCcCCCCCCcc-CC-CCCCCcEEEccCCCCCcc--cCC-CCCCCCCCCEEECCCCc-CccccCccccCCCCCC
Q 043978 138 MTDLDLSGTRIQGNFPDQ-IF-LLPNLRVLYLCGNIHLTG--YLP-KCNWSSPLRELDLSLSD-FSGEIPYSIGNLLFLE 211 (683)
Q Consensus 138 L~~L~l~~n~i~~~~~~~-l~-~l~~L~~L~l~~n~~~~~--~~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~ 211 (683)
|.+|++++|......-.. +. --++|..|+++|+...-. .+. -...+++|..|||++|. ++......|.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 555555555443221111 11 123555566655521111 111 23456666677776654 2323334566777888
Q ss_pred EEEccCCccc-ccCCCCCCCCCCCCeeeccCc
Q 043978 212 TVDITYCNFM-GSIPTSTGNLSKATEILFASN 242 (683)
Q Consensus 212 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n 242 (683)
+|.++.|... ....-.+...+.|.+|++.++
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 8888777532 111223466778888887775
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-09 Score=98.10 Aligned_cols=182 Identities=25% Similarity=0.220 Sum_probs=134.5
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCC-cCccccCCHHHHHccCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCR-VLTIEQRTFDLLASNLTKL 113 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n-~~~~~~~~~~~~~~~l~~L 113 (683)
..|++||||...++...+-..++.+.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+ .++ ..++.-.+.+|+.|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--ENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--hhHHHHHHHhhhhH
Confidence 358999999888765445556788899999999999998888888999999999999976 333 23445567899999
Q ss_pred CEEEcCCccCCcCC-hhhhhcCcCCccEEEcCCCcCC--C-CCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCE
Q 043978 114 SLLHLGSTNLSLIK-PFSLLNLSSTMTDLDLSGTRIQ--G-NFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRE 188 (683)
Q Consensus 114 ~~L~L~~n~l~~~~-~~~l~~l~~~L~~L~l~~n~i~--~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 188 (683)
..|+++.|.+.... --.+....+.|+.|+++++.-. . .+..-..++++|.+||+++|..+..... .+.+++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 99999998765432 2344555688999999988422 1 1112235789999999999855443322 6778889999
Q ss_pred EECCCCcCccccCc---cccCCCCCCEEEccCCcc
Q 043978 189 LDLSLSDFSGEIPY---SIGNLLFLETVDITYCNF 220 (683)
Q Consensus 189 L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~ 220 (683)
|.++.|... .|. .+...|.|.+|++.++--
T Consensus 343 lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 343 LSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 999988742 343 456788999999987643
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-08 Score=105.98 Aligned_cols=180 Identities=22% Similarity=0.260 Sum_probs=122.8
Q ss_pred CCCCCCCceEEeCCCCCCCccCC--CCCCCCcEEEccCCccc----------CCCCccccCCCCCCEEEcCCCcCCCCCC
Q 043978 421 ALHPWKNIRTLDLRNNKIQGSIL--VPPPSTEVFLVSNNKLS----------GQIPPYICSLSSLKYLSLSHNNLSGTIP 488 (683)
Q Consensus 421 ~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~i~----------~~~~~~l~~l~~L~~L~Ls~n~i~~~~~ 488 (683)
....|.+|+.|.++++.+....- ..-..|++|.-. +... +.+...+ ....|.+.+.++|.+. .+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-hHH
Confidence 34478899999999998864110 011223333211 1110 1111111 1235788889999987 555
Q ss_pred hhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCC
Q 043978 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLP 568 (683)
Q Consensus 489 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 568 (683)
.++.- .+.|+.|+|++|+++.. +.+..++.|+.|||++|.+.....-....|. |..|.+++|.++.. .++.++.
T Consensus 181 ~SLql-l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 181 ESLQL-LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHH-HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 55543 44899999999999866 4788899999999999999844333444554 99999999998754 4578999
Q ss_pred CCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 569 LLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 569 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|+.||+++|-+.+... -..+..+..|+.|+|.+|++-+ -|
T Consensus 255 sL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl~c-~p 295 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPLCC-AP 295 (1096)
T ss_pred hhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcccc-CH
Confidence 99999999999875432 1234567789999999999973 45
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-07 Score=87.35 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=18.9
Q ss_pred CCCCCeeeccCccccc--cCCccccCCCCCCEEEccCCcCc
Q 043978 231 LSKATEILFASNHLTG--QLPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 231 l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++.++.+++.+|.+++ .+...+.++|.|+.|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3455555555555543 12223344555555555555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-07 Score=86.34 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=88.7
Q ss_pred cccccCCeeeCCCCCCCCCC---CCcccCCCCCCCEEeCCCCCCCCC-----------CCccCcCCCCCCEEeCCCCcCc
Q 043978 32 FRLSHLQSLNLAFNNFLGSR---ISPEFGRLKELTYLNPSFSNFGGL-----------VPSEISHLSKLTHLGLSCRVLT 97 (683)
Q Consensus 32 ~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~-----------~~~~~~~l~~L~~L~ls~n~~~ 97 (683)
..+..+..++||||.|.... +...+.+-++|+..++++- +++. +..++.+|++|+..++|.|.+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34566677777777664321 1223444556666666542 1221 1123445666666666666554
Q ss_pred ccc-CCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCccc
Q 043978 98 IEQ-RTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGY 176 (683)
Q Consensus 98 ~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 176 (683)
... ..+...+++.+.|++|.+++|.+..+....+++ .|.+|- . -....+-|.|++.....|....+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk---al~~la--~-------nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK---ALFHLA--Y-------NKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH---HHHHHH--H-------HhhhccCCCceEEEeccchhccCc
Confidence 211 122334455555666666555544332222221 011110 0 011223445555555555211111
Q ss_pred CC----CCCCCCCCCEEECCCCcCccc-----cCccccCCCCCCEEEccCCccccc----CCCCCCCCCCCCeeeccCcc
Q 043978 177 LP----KCNWSSPLRELDLSLSDFSGE-----IPYSIGNLLFLETVDITYCNFMGS----IPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 177 ~~----~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~ 243 (683)
.. .+.....|+.+.+..|.|... +...+..+++|+.||+.+|.++.. +...+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 11 122224556666666555421 111234556666666666655421 12223334445555555554
Q ss_pred cc
Q 043978 244 LT 245 (683)
Q Consensus 244 l~ 245 (683)
++
T Consensus 254 ls 255 (388)
T COG5238 254 LS 255 (388)
T ss_pred hc
Confidence 44
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.2e-06 Score=73.86 Aligned_cols=130 Identities=22% Similarity=0.214 Sum_probs=87.9
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++.+.++. . ...+.........+||++|.+... +.|..++.|.+|.+++|+|+.+.|.--..++.|..|.+.+
T Consensus 22 ~e~~LR~lkip-~-ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-V-IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-c-hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 45555555553 1 122333445677888888888644 5677888899999999999887777666678889999999
Q ss_pred CcCCccC-CccccCCCCCCEEEccCCcCcccC-CCCccccCCCCCcEEeCCCCcCC
Q 043978 554 NMINDTF-PCWLGSLPLLKILILRSNRFYGPL-CKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 554 n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
|.|.... -.-+..+|+|++|.+-+|+..... ........+|+|+.||.+.=.-.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 8776431 123567888889988888875321 11234456788888887665443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.9e-08 Score=95.79 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=18.0
Q ss_pred CCCCcEEEccCCcccC--cCCCCCCCCCCcEEECCCCc
Q 043978 279 LPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 279 l~~L~~L~L~~n~i~~--~~~~~~~~~~L~~L~L~~n~ 314 (683)
+..|+.+.+++++... ....+..+++|+.+++.+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 4455555665555432 22223345566666655554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-08 Score=96.34 Aligned_cols=298 Identities=17% Similarity=0.096 Sum_probs=184.1
Q ss_pred CcEEEEECCCCCCCccee-ecCCCcccccccCCeeeCCCCC-CCCCCCCcccCCCCCCCEEeCCCCC-CCCCCCc-cCcC
Q 043978 7 GNVIGLDLHGSCSWLRGT-IDDNSTLFRLSHLQSLNLAFNN-FLGSRISPEFGRLKELTYLNPSFSN-FGGLVPS-EISH 82 (683)
Q Consensus 7 ~~v~~L~L~~~~~~~~~~-~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~Ls~~~-~~~~~~~-~~~~ 82 (683)
+.++.|.++| |-.+... +.. .-..++++++|++.++. +++......-..+++|++|++..|. ++...-. ....
T Consensus 138 g~lk~LSlrG-~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRG-CRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccc-cccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 6788899998 3333221 122 33479999999999886 3333222334567899999998854 4433222 3357
Q ss_pred CCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhc---CcCCccEEEcCCCc-CCCCCC-ccCC
Q 043978 83 LSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLN---LSSTMTDLDLSGTR-IQGNFP-DQIF 157 (683)
Q Consensus 83 l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~~L~~L~l~~n~-i~~~~~-~~l~ 157 (683)
+++|+++++|.+.-. .+.++.....+++.++.+.+.+|.- ...+.+.. ...-+.++++.+|. +++.-. ..-.
T Consensus 215 C~kL~~lNlSwc~qi-~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQI-SGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred hhhHHHhhhccCchh-hcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 899999999987432 2355666778888888887777532 22233322 12446667766663 332211 1123
Q ss_pred CCCCCcEEEccCCCCCcccCC--CCCCCCCCCEEECCCCcC-ccccCcc-ccCCCCCCEEEccCCccccc--CCCCCCCC
Q 043978 158 LLPNLRVLYLCGNIHLTGYLP--KCNWSSPLRELDLSLSDF-SGEIPYS-IGNLLFLETVDITYCNFMGS--IPTSTGNL 231 (683)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~~~~-~~~~~~~-~~~l~~L~~L~l~~~~~~~~--~~~~~~~l 231 (683)
.+..|++|+.+++...++..- --.++.+|+.+.++.|+- +..-... -.+++.|+.+++..+..... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 577889999888744332211 234568899999988873 2221112 24778899999988765422 22223468
Q ss_pred CCCCeeeccCccccccC-----CccccCCCCCCEEEccCCcCc-ccCCccccCCCCCcEEEccCCcccC--cCCCCC-CC
Q 043978 232 SKATEILFASNHLTGQL-----PHHVSGLLYLTNLDLFGNSLQ-GKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQ-SP 302 (683)
Q Consensus 232 ~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~-~~ 302 (683)
+.|+.+.+++|...... ...-..+..|..+.++++... +..-+.+..+++|+.+++.+++-.. .+..+. ++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 89999999988653222 222345778999999999754 4555667778999999999886432 222232 55
Q ss_pred CCCcEEEC
Q 043978 303 NSLEEVHL 310 (683)
Q Consensus 303 ~~L~~L~L 310 (683)
++++...+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 65555443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-07 Score=84.22 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCccEEEcCCCccccc-CchhhhcCCCCcEEEccCCcCCccCC--ccccCCCCCCEEEccCCcCc
Q 043978 520 SNIQSFDLNCNKFEGS-LPRSLAKCVKLEVVNVGNNMINDTFP--CWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~ 581 (683)
+++..+.+..|++... ....+..++.+-.|+|+.|+|.+ +. +.+..+++|..|.++++++.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~ids-wasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDS-WASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhccccccc-HHHHHHHcCCchhheeeccCCccc
Confidence 4455555555544321 11233444444455555555532 11 13445555555555555554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-06 Score=80.78 Aligned_cols=233 Identities=20% Similarity=0.194 Sum_probs=152.0
Q ss_pred CCCcCcEEECCCCcccccCCC-------CCCCceEEeCCCCCCCcc-------------CCCCCCCCcEEEccCCcccCC
Q 043978 403 GWKSLIDLDLSNNFLTHIALH-------PWKNIRTLDLRNNKIQGS-------------ILVPPPSTEVFLVSNNKLSGQ 462 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~~~-------~~~~L~~L~l~~n~l~~~-------------~~~~~~~L~~L~l~~n~i~~~ 462 (683)
.+..++.+++|+|.+...... .-.+|+..+++.--.... ....||.++..++|+|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 467899999999988765332 345677777665432211 123688999999999988866
Q ss_pred CCc----cccCCCCCCEEEcCCCcCCC----CCChhhhhc--------cCcccEEECCCCcccccc----cccccCCCCc
Q 043978 463 IPP----YICSLSSLKYLSLSHNNLSG----TIPPCLGNF--------TTQLITLHLKNNSLEGHI----HDTFENASNI 522 (683)
Q Consensus 463 ~~~----~l~~l~~L~~L~Ls~n~i~~----~~~~~~~~~--------~~~L~~L~l~~n~l~~~~----~~~~~~l~~L 522 (683)
.|+ .++.-+.|++|.+++|.+.. .+...++.+ .+.|++.....|++.... ...|..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 664 35667789999999987751 122222221 247888888888876432 2334445688
Q ss_pred cEEEcCCCcccccC-----chhhhcCCCCcEEEccCCcCCccC----CccccCCCCCCEEEccCCcCcccCCCC----cc
Q 043978 523 QSFDLNCNKFEGSL-----PRSLAKCVKLEVVNVGNNMINDTF----PCWLGSLPLLKILILRSNRFYGPLCKS----IT 589 (683)
Q Consensus 523 ~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~ 589 (683)
+.+.+.+|.|.... -..+..+.+|+.||+.+|-++-.. ...+..-+.|+.|.+.+|-++..-..+ +.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 88888888876321 124566788999999999776432 223334466888888888876432211 11
Q ss_pred ccCCCCCcEEeCCCCcCCCC------CcHHHHhcchhhcccccccceeeecc
Q 043978 590 TFSFQALRIIDLSRNEFKDF------LPRRNFTSMEAMKNVDEQATRLQYMG 635 (683)
Q Consensus 590 ~~~l~~L~~L~ls~n~~~~~------~p~~~~~~~~~L~~l~l~~n~~~~~~ 635 (683)
-...|+|+.|-..+|.+.+- +|...-..++-|..+...+|++....
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 22467888888888887643 23333356788888888888886654
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-07 Score=75.12 Aligned_cols=87 Identities=23% Similarity=0.321 Sum_probs=47.8
Q ss_pred cCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc
Q 043978 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE 547 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 547 (683)
.....|+..+|++|.+. .+|..+....+..+.|++++|+|++. |..+..++.|+.|+++.|++. ..|..+..+.+|-
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 33445555566666665 55555555444556666666665533 333555556666666666555 4455555555555
Q ss_pred EEEccCCcCC
Q 043978 548 VVNVGNNMIN 557 (683)
Q Consensus 548 ~L~l~~n~l~ 557 (683)
.|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 5555555554
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.3e-07 Score=73.66 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCccc
Q 043978 472 SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFE 533 (683)
Q Consensus 472 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 533 (683)
.++.|++++|.+. .+|..+..++ .|+.|+++.|.+... |..+..+.++-.|+..+|...
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~-aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMP-ALRSLNLRFNPLNAE-PRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhH-HhhhcccccCccccc-hHHHHHHHhHHHhcCCCCccc
Confidence 3444444444444 3444444333 444444444444322 222222444444444444443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=76.93 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=17.7
Q ss_pred CCccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 520 SNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
++|+.|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 45666666666654 3333333 36666666655
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=69.28 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=54.5
Q ss_pred cEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccc-cccccCCCCccEEEcC
Q 043978 450 EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHI-HDTFENASNIQSFDLN 528 (683)
Q Consensus 450 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~ 528 (683)
..+++++|.+... +.|..++.|.+|.+.+|+|+ .+.+.+..+.++|..|.+.+|.|.... -+-+..++.|+.|.+-
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3444444444422 34555666666777777666 455555555556666666666654321 1234455666666666
Q ss_pred CCcccccCc---hhhhcCCCCcEEEccCC
Q 043978 529 CNKFEGSLP---RSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 529 ~n~l~~~~~---~~l~~l~~L~~L~l~~n 554 (683)
+|+++..-- ..+..+++|++||.+.=
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 666552211 23455566666665443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-05 Score=53.21 Aligned_cols=34 Identities=41% Similarity=0.571 Sum_probs=13.2
Q ss_pred CcEEEccCCcCCccCCccccCCCCCCEEEccCCcC
Q 043978 546 LEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 546 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 580 (683)
|++|++++|+|++ +|..++++++|++|++++|++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCC
Confidence 4444444444442 222344444444444444443
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.7e-05 Score=76.19 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=82.8
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC-cccccccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN-SLEGHIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 524 (683)
+.+++.|++++|.+.. +|. -..+|++|.+++|.-...+|..+ +++|+.|++++| .+.. .| .+|+.
T Consensus 51 ~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s-LP------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG-LP------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc-cc------cccce
Confidence 5778899999997774 442 23469999998865444667544 358999999988 5542 22 35788
Q ss_pred EEcCCCcccc--cCchhhhcCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEe
Q 043978 525 FDLNCNKFEG--SLPRSLAKCVKLEVVNVGNNMINDT--FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIID 600 (683)
Q Consensus 525 L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 600 (683)
|+++++.... .+|. +|+.|.+.+++.... .|.. -.++|++|++++|.... .|. .-..+|+.|+
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~----~LP~SLk~L~ 183 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPE----KLPESLQSIT 183 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCccc-Ccc----cccccCcEEE
Confidence 8887766431 2222 567777754331111 1111 12689999999988652 221 1125788888
Q ss_pred CCCCc
Q 043978 601 LSRNE 605 (683)
Q Consensus 601 ls~n~ 605 (683)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 88773
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.75 E-value=3e-05 Score=51.52 Aligned_cols=38 Identities=37% Similarity=0.607 Sum_probs=26.8
Q ss_pred CCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 520 SNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 520 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
++|++|++++|+++. +|..++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 467788888888874 45567788888888888887775
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.9e-05 Score=86.61 Aligned_cols=106 Identities=25% Similarity=0.300 Sum_probs=66.9
Q ss_pred CCCCEEeCCCCCCCCC-CCccC-cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCC
Q 043978 60 KELTYLNPSFSNFGGL-VPSEI-SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST 137 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~-~~~~~-~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 137 (683)
.+|++|++++...... -|..+ ..+|.|++|.+++..+.. ..|.....++++|+.||+|+++++.. ..++.+ ++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L-kn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTNISNL--SGISRL-KN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCCccCc--HHHhcc-cc
Confidence 4677777777543211 22233 346778877777755442 33566667777777777777777766 566677 77
Q ss_pred ccEEEcCCCcCCC-CCCccCCCCCCCcEEEccCC
Q 043978 138 MTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGN 170 (683)
Q Consensus 138 L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n 170 (683)
|++|.+.+=.+.. ..-..+.++++|++||+|..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 7777776655543 11235667777777777765
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.4e-05 Score=87.73 Aligned_cols=136 Identities=17% Similarity=0.241 Sum_probs=93.1
Q ss_pred CCCCEEEcCCCcC-CCCCChhhhhccCcccEEECCCCccccc-ccccccCCCCccEEEcCCCcccccCchhhhcCCCCcE
Q 043978 471 SSLKYLSLSHNNL-SGTIPPCLGNFTTQLITLHLKNNSLEGH-IHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEV 548 (683)
Q Consensus 471 ~~L~~L~Ls~n~i-~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 548 (683)
.+|++|++++... ....|..++...|+|+.|.+++-.+... ....+.++++|..||+|+..++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4678888877643 2244555666677888888888766432 334566778889999998888744 67888888888
Q ss_pred EEccCCcCCc-cCCccccCCCCCCEEEccCCcCcccCCC----CccccCCCCCcEEeCCCCcCCC
Q 043978 549 VNVGNNMIND-TFPCWLGSLPLLKILILRSNRFYGPLCK----SITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 549 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
|.+.+=.+.. ..-..+.+|++|+.||+|.-+....... ......+|.|+.||.|+..+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 8887776653 1222455788899999988875432200 0122358899999999888764
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=61.98 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=49.4
Q ss_pred CcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 496 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
++|+.+.+.. .+..+...+|.++++|+.+++.++ +......+|..+++|+.+.+.+ .+.......|..+++|+.+++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 3566666553 344455566666666666666664 5445555666666677777754 333344455666666766666
Q ss_pred cCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhh
Q 043978 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAM 621 (683)
Q Consensus 576 ~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L 621 (683)
..+ +..... ..+... .|+.+.+.. .+. .++...|.++++|
T Consensus 89 ~~~-~~~i~~--~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGS--SSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHT--TTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred Ccc-ccEEch--hhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 554 321111 233444 666666665 333 3566677766655
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=61.62 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=35.5
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+.+|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+....+++.+.+.+ .+.......|..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 33444444432 233233344555555555555443 32 33333333333455555543 3333333444445555555
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
++..+ +.......|.++ +|+.+.+..
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55443 333333444444 455555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00018 Score=66.82 Aligned_cols=80 Identities=28% Similarity=0.307 Sum_probs=38.3
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCC--cccccCchhhhcCCCCcEEEccCCcCCccCCcc---ccCCCCCC
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN--KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW---LGSLPLLK 571 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~ 571 (683)
.|+.|.+.+..++.. ..|..+++|+.|.++.| .+.+.++.....+++|++|++++|++.. +.. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchh
Confidence 455555555554432 33444555666666666 3333333333444556666666665543 111 22334444
Q ss_pred EEEccCCcC
Q 043978 572 ILILRSNRF 580 (683)
Q Consensus 572 ~L~l~~n~l 580 (683)
.|++.+|.-
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555555543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00011 Score=68.12 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=45.3
Q ss_pred cCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCC-hhhhhcC
Q 043978 56 FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIK-PFSLLNL 134 (683)
Q Consensus 56 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l 134 (683)
...+..|+.|++.+..++.. ..|-.+++|++|++|.|..... ..++..+.++++|+++++++|.+..+. ...+..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 34445555555555554443 3445566666666666622211 334444455566666666666554321 1233444
Q ss_pred cCCccEEEcCCCcCC
Q 043978 135 SSTMTDLDLSGTRIQ 149 (683)
Q Consensus 135 ~~~L~~L~l~~n~i~ 149 (683)
++|..|++..|..+
T Consensus 116 -~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 116 -ENLKSLDLFNCSVT 129 (260)
T ss_pred -cchhhhhcccCCcc
Confidence 55556666555544
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=1.7e-05 Score=73.53 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=47.6
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l 575 (683)
+.+.|+..+|.++++ .....++.|+.|.|+=|+++... .|..|++|++|+|..|.|.+... ..+.++|+|+.|+|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666543 33445666666666666665432 36666667777776666654321 13446666777777
Q ss_pred cCCcCcc
Q 043978 576 RSNRFYG 582 (683)
Q Consensus 576 ~~n~l~~ 582 (683)
..|+-.+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 6666543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.00012 Score=79.23 Aligned_cols=60 Identities=33% Similarity=0.354 Sum_probs=25.5
Q ss_pred CCccEEEcCCCc-CCCCCCccCC-CCCCCcEEEccCCCCCccc-C-CCCCCCCCCCEEECCCCc
Q 043978 136 STMTDLDLSGTR-IQGNFPDQIF-LLPNLRVLYLCGNIHLTGY-L-PKCNWSSPLRELDLSLSD 195 (683)
Q Consensus 136 ~~L~~L~l~~n~-i~~~~~~~l~-~l~~L~~L~l~~n~~~~~~-~-~~~~~~~~L~~L~L~~~~ 195 (683)
++|+.|+++++. +++..-..+. .+++|++|.+.+|..+++. + .....++.|++|++++|.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 555555555554 3332222222 2455555554444211111 1 123334455555555554
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00031 Score=76.12 Aligned_cols=238 Identities=21% Similarity=0.098 Sum_probs=111.2
Q ss_pred CCCCCCEEeCCCCCCCCC--CCccCcCCCCCCEEeCCCC--cCccccCCHHHHHccCCCCCEEEcCCcc-CCcCChhhhh
Q 043978 58 RLKELTYLNPSFSNFGGL--VPSEISHLSKLTHLGLSCR--VLTIEQRTFDLLASNLTKLSLLHLGSTN-LSLIKPFSLL 132 (683)
Q Consensus 58 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~ls~n--~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~ 132 (683)
.++.|+.|.+.++.-... .......+++|+.|+++++ ...............+++|+.|+++++. +++..-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666542222 1234455677777777652 1111111122344556777777777666 5555555555
Q ss_pred cCcCCccEEEcCCCc-CCCCCC-ccCCCCCCCcEEEccCCCCCccc-CC-CCCCCCCCCEEECCCCcCccccCccccCCC
Q 043978 133 NLSSTMTDLDLSGTR-IQGNFP-DQIFLLPNLRVLYLCGNIHLTGY-LP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLL 208 (683)
Q Consensus 133 ~l~~~L~~L~l~~n~-i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 208 (683)
...++|++|.+.+|. +++..- .....++.|++|++++|..++.. .. ....+++++.+.+....- ++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 533677777766665 443222 22345667777777777443221 11 223345555544332211 33
Q ss_pred CCCEEEccCCccc---ccCCCCCCCCCCCCeeeccCccccccC-CccccCCCCCCEEEccCCcCcccCCccccCCCCCcE
Q 043978 209 FLETVDITYCNFM---GSIPTSTGNLSKATEILFASNHLTGQL-PHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVS 284 (683)
Q Consensus 209 ~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 284 (683)
.++.+.+..+... .........+++++.+.+..+...... ...+.+++.|. ..+... ......++.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~ 405 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLRV 405 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccce
Confidence 3444443332221 111223445666666666665533222 13334444441 111111 111122667
Q ss_pred EEccCCcccCcC--CCCC-CCCCCcEEECCCCcC
Q 043978 285 VNLAWNKLTGPI--DGFQ-SPNSLEEVHLEKNQI 315 (683)
Q Consensus 285 L~L~~n~i~~~~--~~~~-~~~~L~~L~L~~n~i 315 (683)
|+++.+...... .... ....++.+++.++..
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCccc
Confidence 777766543211 1111 145566666666654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.0017 Score=60.71 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=80.0
Q ss_pred CCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcE
Q 043978 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRI 598 (683)
Q Consensus 519 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 598 (683)
+.+.+.|++.+|.+.++ .....++.|++|.||-|.|+..-| |..+++|+.|+|+.|.|.... +-.-+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sld-EL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLD-ELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHH-HHHHHhcCchhhh
Confidence 55788999999999864 346789999999999999986544 789999999999999986432 2234568899999
Q ss_pred EeCCCCcCCCCCcH----HHHhcchhhcccc
Q 043978 599 IDLSRNEFKDFLPR----RNFTSMEAMKNVD 625 (683)
Q Consensus 599 L~ls~n~~~~~~p~----~~~~~~~~L~~l~ 625 (683)
|.|..|+-.+.-+. ..+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998766553 2455567777776
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.00032 Score=73.79 Aligned_cols=61 Identities=26% Similarity=0.237 Sum_probs=32.2
Q ss_pred ccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC-------C-CCCceEEeCCCCCCC
Q 043978 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH-------P-WKNIRTLDLRNNKIQ 439 (683)
Q Consensus 369 L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-------~-~~~L~~L~l~~n~l~ 439 (683)
+..+.+.+|.+..-.... +... ....+.|..|++++|.+.+.... . -..++.|++..|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~---------l~~~-l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~ 157 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEE---------LAQA-LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLT 157 (478)
T ss_pred HHHhhhhhCccccchHHH---------HHHH-hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccc
Confidence 777777777776433211 1111 14556677777777777643211 1 133455555555554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.015 Score=31.86 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=4.9
Q ss_pred CcEEEccCCcCC
Q 043978 546 LEVVNVGNNMIN 557 (683)
Q Consensus 546 L~~L~l~~n~l~ 557 (683)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.027 Score=30.88 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=9.6
Q ss_pred ccEEEcCCCcccccCchhhh
Q 043978 522 IQSFDLNCNKFEGSLPRSLA 541 (683)
Q Consensus 522 L~~L~L~~n~l~~~~~~~l~ 541 (683)
|+.||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555555555555 3343343
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.0004 Score=73.04 Aligned_cols=189 Identities=20% Similarity=0.199 Sum_probs=102.0
Q ss_pred CCCCcEEEccCCcccCC----CCccccCCCC-CCEEEcCCCcCCCC----CChhhhhccCcccEEECCCCccccc----c
Q 043978 446 PPSTEVFLVSNNKLSGQ----IPPYICSLSS-LKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKNNSLEGH----I 512 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~----~~~~l~~l~~-L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~ 512 (683)
..++++|.+++|.++.. ....+...++ +..|++..|.+.+. +.+.+......++.++++.|.|++. .
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34455555555555421 1123444555 66788888888643 2233333324678889999988764 3
Q ss_pred cccccCCCCccEEEcCCCcccccCc----hhhhcCCCCcEEEccCCcCCccCCcc-------------------------
Q 043978 513 HDTFENASNIQSFDLNCNKFEGSLP----RSLAKCVKLEVVNVGNNMINDTFPCW------------------------- 563 (683)
Q Consensus 513 ~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------- 563 (683)
......++.++.+.+++|++..... ..+.....+..+-+.++......+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEE 362 (478)
T ss_pred HHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHH
Confidence 3455667788899999888864322 23334455666677655443322110
Q ss_pred --------ccC-CCCCCEEEccCCcCcccC--CCCccccCCCCCcEEeCCCCcCCCCCcHHHH----hcchhhccccccc
Q 043978 564 --------LGS-LPLLKILILRSNRFYGPL--CKSITTFSFQALRIIDLSRNEFKDFLPRRNF----TSMEAMKNVDEQA 628 (683)
Q Consensus 564 --------l~~-l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~----~~~~~L~~l~l~~ 628 (683)
..+ -+.+..+++..+.+.+.. .........+.+.+++++.|.....-+...+ .+. .+..+.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~ 441 (478)
T KOG4308|consen 363 GLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSR 441 (478)
T ss_pred HHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhcc
Confidence 011 112444444444432211 0112334456777888888877544332222 233 567777777
Q ss_pred ceeeecc
Q 043978 629 TRLQYMG 635 (683)
Q Consensus 629 n~~~~~~ 635 (683)
|++++.+
T Consensus 442 ~~~~~~~ 448 (478)
T KOG4308|consen 442 NPITALG 448 (478)
T ss_pred Chhhhcc
Confidence 7776655
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.07 Score=30.64 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 593 FQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 593 l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
+++|++|++++|+|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 57777764
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.07 Score=30.64 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 593 FQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 593 l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
+++|++|++++|+|+ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 57777764
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.07 Score=27.07 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=5.1
Q ss_pred CccEEEcccCCCCC
Q 043978 368 SLLKLSFSNCNVSE 381 (683)
Q Consensus 368 ~L~~L~l~~~~l~~ 381 (683)
+|+.|++++|++++
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.015 Score=52.07 Aligned_cols=83 Identities=18% Similarity=0.121 Sum_probs=47.9
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCC-ChhhhhccCcccEEECCCC-cccccccccccCCCCccEEE
Q 043978 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTI-PPCLGNFTTQLITLHLKNN-SLEGHIHDTFENASNIQSFD 526 (683)
Q Consensus 449 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 526 (683)
++.++-+++.|....-+.+..+++++.|.+.+|.-.+.. -..+....++|+.|++++| +|++..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344555555555444455667777777777777643211 1122333457777777777 56655555566666666666
Q ss_pred cCCCc
Q 043978 527 LNCNK 531 (683)
Q Consensus 527 L~~n~ 531 (683)
+.+=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 65544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.055 Score=48.59 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=16.8
Q ss_pred CccEEEcCCCcccccCchhhhcCCCCcEEEccCC
Q 043978 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554 (683)
Q Consensus 521 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 554 (683)
.++.+|.++..+....-+-+.++++++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3455555555554444444444555555555544
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.36 Score=27.61 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=5.6
Q ss_pred CccEEEcCCCccc
Q 043978 521 NIQSFDLNCNKFE 533 (683)
Q Consensus 521 ~L~~L~L~~n~l~ 533 (683)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.36 Score=27.61 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=5.6
Q ss_pred CccEEEcCCCccc
Q 043978 521 NIQSFDLNCNKFE 533 (683)
Q Consensus 521 ~L~~L~L~~n~l~ 533 (683)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=83.89 E-value=0.31 Score=27.29 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=2.9
Q ss_pred cEEEccCCc
Q 043978 547 EVVNVGNNM 555 (683)
Q Consensus 547 ~~L~l~~n~ 555 (683)
++|++++|.
T Consensus 5 ~~L~l~~n~ 13 (24)
T PF13516_consen 5 ETLDLSNNQ 13 (24)
T ss_dssp SEEE-TSSB
T ss_pred CEEEccCCc
Confidence 333333333
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.71 E-value=0.045 Score=50.11 Aligned_cols=85 Identities=18% Similarity=0.210 Sum_probs=43.0
Q ss_pred cCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc
Q 043978 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE 547 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 547 (683)
......+.||++.|++. .+...+.-.. .|..|+++.|++. ..|..+.....+..+++..|..+ ..|.++...+.++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 33445555666665554 2333333222 4555555555554 34445555555555555555554 4455555555555
Q ss_pred EEEccCCcC
Q 043978 548 VVNVGNNMI 556 (683)
Q Consensus 548 ~L~l~~n~l 556 (683)
++++-.|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555554
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.12 E-value=0.057 Score=49.43 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=62.2
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
..+.||++.|++.. ....|+-++.|..|+++.|++. ..|..+.....+..+++..|... ..|..+...+.++.+++.
T Consensus 43 r~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 67788888887653 2345666778888888888886 66777888778888888877776 577778888888888888
Q ss_pred CCcCc
Q 043978 577 SNRFY 581 (683)
Q Consensus 577 ~n~l~ 581 (683)
+|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 683 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 7e-15 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 6e-10 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-14 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 6e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-09 | ||
| 3zyj_A | 440 | Netring1 In Complex With Ngl1 Length = 440 | 2e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 343 bits (882), Expect = e-108
Identities = 147/622 (23%), Positives = 239/622 (38%), Gaps = 123/622 (19%)
Query: 2 CDNVTGNVIGLDLHGSC-SWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLK 60
C + V +DL + + +S+L L+ L+SL L+ ++ GS F
Sbjct: 47 CRD--DKVTSIDLSSKPLNVGFSAV--SSSLLSLTGLESLFLSNSHINGS--VSGFKCSA 100
Query: 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGS 120
LT L+ S ++ G V + S + + L L++ S
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTS-------------------------LGSCSGLKFLNVSS 135
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL---LPNLRVLYLCGNIHLTGYL 177
L S +++ LDLS I G L L+ L + GN ++G +
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN-KISGDV 194
Query: 178 PKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEI 237
+ L LD+S ++FS IP +G+ L+ +DI+ G + ++ +
Sbjct: 195 DVSRCVN-LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
Query: 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTGPI 296
+SN G +P L L L L N G++P +L +L ++L+ N G +
Sbjct: 253 NISSNQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 297 -DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFT 355
F S + LE + L N G +P K++ L+ LDLS N
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTL-----------LKMRGLKVLDLSFNE----- 354
Query: 356 SSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415
G + + + SL+ LDLS+N
Sbjct: 355 ------------------------------------FSGELPESLTNLSASLLTLDLSSN 378
Query: 416 FLT-----HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSL 470
+ ++ +P ++ L L NN +G+IPP + +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYL---------------------QNNGFTGKIPPTLSNC 417
Query: 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530
S L L LS N LSGTIP LG+ + +L L L N LEG I +++ L+ N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT 590
G +P L+ C L +++ NN + P W+G L L IL L +N F G + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 591 FSFQALRIIDLSRNEFKDFLPR 612
+L +DL+ N F +P
Sbjct: 537 CR--SLIWLDLNTNLFNGTIPA 556
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 2e-89
Identities = 156/590 (26%), Positives = 243/590 (41%), Gaps = 83/590 (14%)
Query: 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLG 90
+ R +L+ L+++ NNF P G L +L+ S + G IS ++L L
Sbjct: 196 VSRCVNLEFLDVSSNNFSTG--IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 91 LSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG 150
+S + L L L L + P L T+T LDLSG G
Sbjct: 254 ISSNQFV-----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 151 NFPDQIFLLPNLRVLYLCGNIHLTGYLPK---CNWSSPLRELDLSLSDFSGEIPYSIGNL 207
P L L L N + +G LP L+ LDLS ++FSGE+P S+ NL
Sbjct: 309 AVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRG-LKVLDLSFNEFSGELPESLTNL 366
Query: 208 LF-LETVDITYCNFMGSIPTSTGNLSKA--TEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
L T+D++ NF G I + K E+ +N TG++P +S L +L L
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIPSSL 323
N L G +PS L +L L + L N L G I +LE + L+ N + G IPS L
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Query: 324 FQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFP 383
S NL ++ LSNN L +G I P
Sbjct: 487 ------------SNCTNLNWISLSNNRL-----TGEI----------------------P 507
Query: 384 SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-HI--ALHPWKNIRTLDLRNNKIQG 440
++ ++L L LSNN + +I L +++ LDL N G
Sbjct: 508 KWIGRL---------------ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 441 SILVPPPS--TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN--NLSGTIPPCLGNFTT 496
+I P + + ++ N ++G+ YI + K + N G L +T
Sbjct: 553 TI---PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
++ + GH TF+N ++ D++ N G +P+ + L ++N+G+N I
Sbjct: 610 -RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEF 606
+ + P +G L L IL L SN+ G + ++++ + L IDLS N
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM--LTEIDLSNNNL 716
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 1e-56
Identities = 112/476 (23%), Positives = 180/476 (37%), Gaps = 82/476 (17%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLS-KL 86
S L+SL L+ NNF G + + +++ L L+ SF+ F G +P +++LS L
Sbjct: 312 PFFGSCSLLESLALSSNNFSGE-LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370
Query: 87 THLGLSCRVLT--IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
L LS + I +L + L L+L + + P +L N S + L LS
Sbjct: 371 LTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLS 426
Query: 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK--CNWSSPLRELDLSLSDFSGEIPY 202
+ G P + L LR L L N L G +P+ + L L L +D +GEIP
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKT-LETLILDFNDLTGEIPS 484
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLD 262
+ N L + ++ G IP G L + ++N +G +P + L LD
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544
Query: 263 LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSS 322
L N G +P+ +F ++ N K I + G
Sbjct: 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC-HGAGNLLEFQGIRSEQ 603
Query: 323 LFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEF 382
L +L ++++ G+
Sbjct: 604 LN------------RLSTRNPCNITSRVY-----GGHT---------------------- 624
Query: 383 PSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-HI--ALHPWKNIRTLDLRNNKIQ 439
N S++ LD+S N L+ +I + + L+L +N I
Sbjct: 625 SPTFDN---------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 440 GSILVPPPST-------EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP 488
GSI P + +S+NKL G+IP + +L+ L + LS+NNLSG IP
Sbjct: 670 GSI----PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 7e-42
Identities = 84/373 (22%), Positives = 135/373 (36%), Gaps = 80/373 (21%)
Query: 258 LTNLDLFGNSLQ---GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQ 314
+T++DL L V S L +L L S+ L+ + + G + GF+ SL + L +N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSF 374
+ G + + L+FL++S+N L G + L SL L
Sbjct: 112 LSGPVTT----------LTSLGSCSGLKFLNVSSNTL---DFPGKVSGGLKLNSLEVLDL 158
Query: 375 SNCNVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-HIALHPWKNIRTLD 432
S ++S S+ L L +S N ++ + + N+ LD
Sbjct: 159 SANSISGANVVGWVLSDGC------------GELKHLAISGNKISGDVDVSRCVNLEFLD 206
Query: 433 LRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG 492
+ +N I P++ S+L++L +S N LSG +
Sbjct: 207 VSSNNFSTGI----------------------PFLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 493 NFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552
T +L L++ +N G I ++Q L NKF G +P L+
Sbjct: 245 TCT-ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS----------- 290
Query: 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR 612
G+ L L L N FYG + S L + LS N F LP
Sbjct: 291 ------------GACDTLTGLDLSGNHFYGAVPPFF--GSCSLLESLALSSNNFSGELPM 336
Query: 613 RNFTSMEAMKNVD 625
M +K +D
Sbjct: 337 DTLLKMRGLKVLD 349
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 231 bits (590), Expect = 1e-66
Identities = 124/620 (20%), Positives = 216/620 (34%), Gaps = 69/620 (11%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS- 92
+++ LNL N + F R +LT L+ F+ L P L L L L
Sbjct: 24 PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 93 CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNF 152
+ + +TF + T L+ LHL S ++ IK + + + LDLS +
Sbjct: 83 NELSQLSDKTF----AFCTNLTELHLMSNSIQKIKNNPFVKQKN-LITLDLSHNGLSSTK 137
Query: 153 PDQIFLLPNLRVLYLCGN--IHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFL 210
L NL+ L L N L +S L++L+LS + P + L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197
Query: 211 ETVDITYCNFMGSIPTSTG---NLSKATEILFASNHLTGQLPHHVSGLLY--LTNLDLFG 265
+ + S+ + + +++ L+ GL + LT LDL
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHG------- 317
N+L LP L L +N + ++ ++L+++
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317
Query: 318 -TIPSSLFQLCGTIRF-------------DQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
I FQ + + F+ L NL++L LSN+ T + +
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Query: 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--- 420
+ L L+ + +S+ S L LDL N +
Sbjct: 378 LAHSPLHILNLTKNKISKIES--------------DAFSWLGHLEVLDLGLNEIGQELTG 423
Query: 421 -ALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSG--QIPPYICSLSSLK 474
+NI + L NK PS + ++ L P L +L
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483
Query: 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE--------GHIHDTFENASNIQSFD 526
L LS+NN++ L +L L L++N+L G + S++ +
Sbjct: 484 ILDLSNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 527 LNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586
L N F+ +L+++++G N +N + LK L L+ N + K
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-VEK 601
Query: 587 SITTFSFQALRIIDLSRNEF 606
+ +F+ L +D+ N F
Sbjct: 602 KVFGPAFRNLTELDMRFNPF 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 2e-55
Identities = 113/583 (19%), Positives = 194/583 (33%), Gaps = 61/583 (10%)
Query: 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCG 169
T +++L+L L + + S +T LD+ I P+ LP L+VL L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQ-LTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 170 NIHLTGYLPKC-NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST 228
N L+ K + + L EL L + L T+D+++ + +
Sbjct: 83 N-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 229 GNLSKATEILFASNHLTGQLPHHVS--GLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVN 286
L E+L ++N + + L L+L N ++ P + L +
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 287 LAWNKLTGPIDG----FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQ 342
L +L + + S+ + L +Q+ T ++ L T NL
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT----------NLT 251
Query: 343 FLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSK 402
LDLS NNL + D LP L N+ S H
Sbjct: 252 MLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHLFS--------------HSLH 293
Query: 403 GWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQG---SILVPPPSTEVFLVSNNKL 459
G ++ L+L +F + + E + +N +
Sbjct: 294 GLFNVRYLNLKRSFTK------------QSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 460 SGQIPPYICSLSSLKYLSLSHNNLSGTIPP---CLGNFTTQLITLHLKNNSLEGHIHDTF 516
G L +LKYLSLS++ S + + L L+L N + D F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401
Query: 517 ENASNIQSFDLNCNKFEGSLPRS-LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575
+++ DL N+ L + + + N +P L+ L+L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMG 635
R + L I+DLS N + + +E ++ +D Q L +
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLW 520
Query: 636 HAYYDESVTVAMKGHDFQLYMLNLDQ---IYIPNQESPGLAEL 675
+KG L++LNL+ IP + L EL
Sbjct: 521 KHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFEL 562
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 7e-51
Identities = 100/528 (18%), Positives = 174/528 (32%), Gaps = 57/528 (10%)
Query: 28 NSTLFRLSHLQSLNLAFNNFLG-SRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
T +L +LQ L L+ N + L L S + P + +L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197
Query: 87 THLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST-MTDLDLSG 145
L L+ L L T + L L ++ LS + L L T +T LDLS
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 146 TRIQGNFPDQIFLLPNLRVLYLCGN---------IHLTGYLPKCNWSSPLRELDLSLSDF 196
+ D LP L +L N +H + N + +SL+
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317
Query: 197 SGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVS--- 253
+S L LE +++ + G L + +++ + + + +
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Query: 254 -GLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG--FQSPNSLEEVHL 310
L L+L N + L L ++L N++ + G ++ ++ E++L
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370
N+ +S F+ + +LQ L L L + SS + L +L
Sbjct: 438 SYNKYLQLTRNS------------FALVPSLQRLMLRRVALKNVDSSPSP--FQPLRNLT 483
Query: 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRT 430
L SN N++ +G + L LDL +N L + H
Sbjct: 484 ILDLSNNNIANIND--------------DMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 431 LDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC 490
L+ + + +N L LK + L NNL+
Sbjct: 530 YFLKGL----------SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 491 LGNFTTQLITLHLKNNSLEGHIHDTFENA-SNIQSFDLNCNKFEGSLP 537
N L +L+L+ N + F A N+ D+ N F+ +
Sbjct: 580 FNNQV-SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 3e-45
Identities = 90/485 (18%), Positives = 164/485 (33%), Gaps = 56/485 (11%)
Query: 161 NLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNF 220
+ V LT +P + + + L+L+ + + L ++D+ +
Sbjct: 5 SHEVADCSHL-KLTQ-VPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 221 MGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLP 280
P L + N L+ + LT L L NS+Q +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 281 SLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGT---------- 329
+L++++L+ N L+ G +L+E+ L N+I L +
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 330 ----IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385
F + L L L+N L + + + ++ + S+ LS SN +S +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQG-- 440
K W +L LDLS N L + + + L N IQ
Sbjct: 241 TFLGLK------------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 441 ----------SILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC 490
L S +S L L L++L++ N++ G
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348
Query: 491 LGNFTTQLITLHLKNN--SLEGHIHDTFEN--ASNIQSFDLNCNKFEGSLPRSLAKCVKL 546
L L L N+ SL ++TF + S + +L NK + + L
Sbjct: 349 FTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407
Query: 547 EVVNVGNNMINDTFPCW-LGSLPLLKILILRSNRFYGPLCKSITTFS-FQALRIIDLSRN 604
EV+++G N I L + + L N++ + +F+ +L+ + L R
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL---TRNSFALVPSLQRLMLRRV 464
Query: 605 EFKDF 609
K+
Sbjct: 465 ALKNV 469
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 1/186 (0%)
Query: 427 NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT 486
+ D + K+ P + V +++N+L S L L + N +S
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64
Query: 487 IPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546
P L L+L++N L TF +N+ L N + K L
Sbjct: 65 EPELCQKLP-MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 547 EVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEF 606
+++ +N ++ T L L+ L+L +N+ + + F+ +L+ ++LS N+
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Query: 607 KDFLPR 612
K+F P
Sbjct: 184 KEFSPG 189
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 12/141 (8%)
Query: 27 DNSTLFRLSHLQSLNLAFNNF-------LGSRISPEFGRLKELTYLNPSFSNFGGLVPSE 79
++ L L L+ L+L NN L L LN + F +
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555
Query: 80 ISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138
L +L + L + T+ F +N L L+L ++ ++ +
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVF----NNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611
Query: 139 TDLDLSGTRIQGNFPDQIFLL 159
T+LD+ + +
Sbjct: 612 TELDMRFNPFDCTCESIAWFV 632
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 217 bits (555), Expect = 5e-62
Identities = 89/599 (14%), Positives = 178/599 (29%), Gaps = 69/599 (11%)
Query: 30 TLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNF-GGLVPSEISHLSKLTH 88
+L + L+L G + G+L EL L +S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 89 LGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPF-SLLNLSSTMTDLDLSGTR 147
++ Q+TF L+ + K ++ T +
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 148 IQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL 207
I + L LR Y+ + + + NL
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNS-PFVAENI----CEAWENENSEYAQQYKTEDLKWDNL 248
Query: 208 LFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT--------GQLPHHVSGLLYLT 259
L V++ C + +PT L + I A N Q +
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 260 NLDLFGNSLQ-GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGT 318
+ + N+L+ V + L + L + +N+L G + F S L ++L NQI
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE- 367
Query: 319 IPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCN 378
IP++ + ++ L ++N L + + S+ + + FS
Sbjct: 368 IPANFCGF-----------TEQVENLSFAHNKLKYIPNIFDAK---SVSVMSAIDFSYNE 413
Query: 379 VSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRN 435
+ +N + + K ++ ++LSNN ++ + +++L
Sbjct: 414 IGSVDG--KNFDPLDPTPFK-----GINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 436 NKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495
N + + N L + L + L N L+
Sbjct: 467 NMLTE-------------IPKNSLKD-ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512
Query: 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLN------CNKFEGSLPRSLAKCVKLEVV 549
L+ + L NS N+S ++ F + N+ P + C L +
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571
Query: 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608
+G+N I P + +L ++ N + + + L ++ +D
Sbjct: 572 QIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYV--CPYIEAGMYMLFYDKTQD 625
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 3e-53
Identities = 83/596 (13%), Positives = 171/596 (28%), Gaps = 112/596 (18%)
Query: 55 EFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLA-SNLTKL 113
+T L+ G VP I L++L L L + +R F S
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 114 SLLHLGSTNLSLIKPFSLLNLS-STMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIH 172
+ S + ++ Q + + + N +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-N 194
Query: 173 LTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLS 232
+T + ++ L L + F+
Sbjct: 195 ITF------------------------VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230
Query: 233 KATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKL 292
L LT+++++ K+P++L LP + +N+A N+
Sbjct: 231 -----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285
Query: 293 TGPIDGFQSPN---------SLEEVHLEKNQI-HGTIPSSLFQLCGTIRFDQFSKLKNLQ 342
++ +++ N + + +S K+K L
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS------------LQKMKKLG 333
Query: 343 FLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSK 402
L+ N L G + S L L+ + ++E P+
Sbjct: 334 MLECLYNQL-----EGKLPAFGSEIKLASLNLAYNQITEIPANFCGF------------- 375
Query: 403 GWKSLIDLDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNK 458
+ + +L ++N L +I + +D N+I K
Sbjct: 376 -TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD--------------GK 420
Query: 459 LSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-------H 511
+ P ++ ++LS+N +S + L +++L N L
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLTEIPKNSLKD 479
Query: 512 IHDTFENASNIQSFDLNCNKFEGSLPRSLA--KCVKLEVVNVGNNMINDTFPCWLGSLPL 569
++ F+N + S DL NK L L +++ N + FP +
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLNSST 537
Query: 570 LKILILR------SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSME 619
LK +R NR + IT +L + + N+ + + + ++
Sbjct: 538 LKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSNDIRK-VNEKITPNIS 590
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-40
Identities = 69/504 (13%), Positives = 133/504 (26%), Gaps = 106/504 (21%)
Query: 132 LNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDL 191
LN + +T L L G G PD I L L VL L +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH-GEKV---------------- 119
Query: 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTG--NLSKATEILFASNHLTGQLP 249
+ P I + E ++ + + S + S+ +
Sbjct: 120 ---NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176
Query: 250 HHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVH 309
L T + N++ V + L L + + + E +
Sbjct: 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI----CEAWENEN 231
Query: 310 LEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSL 369
E Q + T + LK+L +++ N L+ LP+
Sbjct: 232 SEYAQQYKTEDLK------------WDNLKDLTDVEVYNCPNLT-----------KLPT- 267
Query: 370 LKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIR 429
+ ++++ N
Sbjct: 268 ---FLKAL---------------------------PEMQLINVACNRGISGEQLKDDWQA 297
Query: 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKL-SGQIPPYICSLSSLKYLSLSHNNLSGTIP 488
D + ++ + N L + + + + L L +N L G
Sbjct: 298 LADAPVGE----------KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KL 346
Query: 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLA--KCVKL 546
P G+ +L +L+L N + + +++ NK + +P +
Sbjct: 347 PAFGSEI-KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404
Query: 547 EVVNVGNNMINDTFPCWLGSLPL-------LKILILRSNRFYGPLCKSITTFSFQALRII 599
++ N I L + + L +N+ + +T S L I
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP--LSSI 462
Query: 600 DLSRNEFKDFLPRRNFTSMEAMKN 623
+L N + E KN
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKN 486
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-32
Identities = 58/448 (12%), Positives = 133/448 (29%), Gaps = 56/448 (12%)
Query: 188 ELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQ 247
+ + LS + I + + ++ + G N + E+ + Q
Sbjct: 17 IVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQ 72
Query: 248 LPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPN---- 303
++ +T L L G G+VP + L L + L + F
Sbjct: 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132
Query: 304 -SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI-D 361
S E+ + T F DL + + S +I
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDP---------------REDFSDLIKDCINSDPQQKSIKK 177
Query: 362 IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA 421
++ + N++ + L + N+ A
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVMR---------------LTKLRQFYMGNSPFV--A 220
Query: 422 LHPWKNIRTLDLRNNKIQGSILVPP---PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478
+ + + + + + V N ++P ++ +L ++ +++
Sbjct: 221 ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280
Query: 479 SHNNLSG--TIPPCLGNFT-----TQLITLHLKNNSL-EGHIHDTFENASNIQSFDLNCN 530
+ N + ++ +++ N+L + + + + + N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Query: 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT 590
+ EG LP + +KL +N+ N I + + G ++ L N+ +
Sbjct: 341 QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDA 398
Query: 591 FSFQALRIIDLSRNEFKDFLPRRNFTSM 618
S + ID S NE + +NF +
Sbjct: 399 KSVSVMSAIDFSYNEIGS-VDGKNFDPL 425
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-27
Identities = 52/359 (14%), Positives = 105/359 (29%), Gaps = 46/359 (12%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTH 88
+ +Q + + +NN + ++K+L L ++ G +P KL
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357
Query: 89 LGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLI-KPFSLLNLSSTMTDLDLSGT 146
L L+ ++ I ++ L L I F ++S M+ +D S
Sbjct: 358 LNLAYNQITEIPANFC----GFTEQVENLSFAHNKLKYIPNIFDAKSVSV-MSAIDFSYN 412
Query: 147 RIQG-------NFPDQIFLLPNLRVLYLCGNIHLTGYLPK-CNWSSPLRELDLS------ 192
I F N+ + L N ++ + + + SPL ++L
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTE 471
Query: 193 -LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPT-STGNLSKATEILFASNHLTGQLPH 250
+ + + N L ++D+ + L I + N + P
Sbjct: 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT 530
Query: 251 HVSGLLYLT------NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNS 304
L D GN + P + PSL + + N + + +
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPN 588
Query: 305 LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
+ + ++ N S + L + +DIK
Sbjct: 589 ISVLDIKDNPNISIDLSYVC------------PYIEAGMYMLFYDKTQDIRGCDALDIK 635
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 6e-60
Identities = 105/561 (18%), Positives = 184/561 (32%), Gaps = 62/561 (11%)
Query: 97 TIEQRTFDLLASNLTK--------LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRI 148
+ T+ + N K L L L + +S + + LDLS I
Sbjct: 6 VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEI 64
Query: 149 QGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC-NWSSPLRELDLSLSDFSGEIPYSIGNL 207
Q L +L L L GN + + S L++L ++ + + IG+L
Sbjct: 65 QTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 208 LFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTN----LD 262
L+ +++ + +P NL+ + +SN + + L + LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 263 LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI--DGFQSPNSLEEVHLEKNQ------ 314
L N + + F L + L N + + Q LE L +
Sbjct: 184 LSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 315 IHGTIPSSLFQLC---------------GTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGN 359
+ S+L LC D F+ L N+ L + +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302
Query: 360 IDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKI-----HGRISKHDSKGWKSLIDLDLSN 414
L NC +FP+ S K + + SL LDLS
Sbjct: 303 ------NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356
Query: 415 NFLTHIALHPW-----KNIRTLDLRNNKIQGSI--LVPPPSTEVFLVSNNKLSGQIPPYI 467
N L+ +++ LDL N + + E ++ L +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 468 -CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHI-HDTFENASNIQSF 525
SL +L YL +SH + + L L + NS + + D F N+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585
DL+ + E P + L+V+N+ +N L L++L N
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 586 KSITTFSFQALRIIDLSRNEF 606
+ + F +L ++L++N+F
Sbjct: 536 QELQHF-PSSLAFLNLTQNDF 555
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 7e-53
Identities = 94/516 (18%), Positives = 177/516 (34%), Gaps = 42/516 (8%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK--CNWSSPLRELD 190
NL + +LDLS ++ F P L+VL L + + S L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH-LSTLI 82
Query: 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTG-QLP 249
L+ + + L L+ + N G+L E+ A N + +LP
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 250 HHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSL----VSVNLAWNKLTGPIDGFQSPNSL 305
+ S L L +LDL N +Q + L L + +S++L+ N + G L
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202
Query: 306 EEVHLEKNQIHGTIPSSLFQ----------------LCGTIRFDQFSKLKNLQFLDLSNN 349
++ L N + + Q G + S L+ L L +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 350 NLLSFTSSGN--IDIKYSLPSLLKLSFSNCNVSEFPSF-----LRNSEKIHGRISKHDSK 402
L + ID+ L ++ S + + F ++ E ++ + + +
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL 322
Query: 403 GWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPP-----PSTEVFLVSN 456
KSL L ++N + + ++ LDL N + S + +S
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 457 NKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTF 516
N + + L L++L H+NL + LI L + + + F
Sbjct: 383 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 517 ENASNIQSFDLNCNKFEGSL-PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575
S+++ + N F+ + P + L +++ + P SL L++L +
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611
N F+ +L+++D S N
Sbjct: 502 SHNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKK 535
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 1e-44
Identities = 87/493 (17%), Positives = 158/493 (32%), Gaps = 48/493 (9%)
Query: 158 LLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITY 217
++PN+ C ++ +P N + LDLS + YS + L+ +D++
Sbjct: 6 VVPNITYQ--CMELNFY-KIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61
Query: 218 CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277
C + +LS + ++ N + SGL L L +L +
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121
Query: 278 TLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCG------- 328
L +L +N+A N + + F + +LE + L N+I + L L
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 329 ---------TIRFDQFSKLKNLQFLDLSNNNL------LSFTSSGNIDIKY--------- 364
I+ F ++ L L L NN +++
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240
Query: 365 -SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-AL 422
+L K + F + ++ L + + +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 423 HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN 482
+ L+L N K + S + ++NK L SL++L LS N
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNG 358
Query: 483 LS--GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS- 539
LS G TT L L L N + + F ++ D + + S
Sbjct: 359 LSFKGCCSQSDFG-TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRII 599
L +++ + F L L++L + N F I T + L +
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFL 475
Query: 600 DLSRNEFKDFLPR 612
DLS+ + + P
Sbjct: 476 DLSQCQLEQLSPT 488
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-43
Identities = 87/529 (16%), Positives = 160/529 (30%), Gaps = 68/529 (12%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
+N + L L+ LN+A N ++ F L L +L+ S + + +++ L ++
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 87 THLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT 146
L LS + A +L L L + SL + + + + L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 147 RIQGNF---PDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL----DLSLSDFSGE 199
+ L L L + + L SL + E
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
+ +++ C F +L + G L L
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLE 350
Query: 260 NLDLFGNSLQ--GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317
LDL N L G F SL ++L++N + F LE + + + +
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
S+F L+NL +LD+S+ + I L SL L +
Sbjct: 411 MSEFSVFL-----------SLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGN 455
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLR 434
+ ++L LDLS L + A + +++ L++
Sbjct: 456 S-------------FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM- 501
Query: 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF 494
S+N L+SL+ L S N++ + L +F
Sbjct: 502 --------------------SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541
Query: 495 TTQLITLHLKNNSLEG--HIHDTFENASNIQSFDLNCNKFEGSLPRSLA 541
+ L L+L N + + + + + E + P
Sbjct: 542 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 212 bits (541), Expect = 8e-59
Identities = 95/597 (15%), Positives = 177/597 (29%), Gaps = 71/597 (11%)
Query: 30 TLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNF-GGLVPSEISHLSKLTH 88
L + L+LA G + G+L EL L+ + L+
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376
Query: 89 LGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLN-LSSTMTDLDLSGTR 147
R+ ++ F L LL +KP + +S T + R
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436
Query: 148 IQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL 207
I I L L+++Y + T + + + + S NL
Sbjct: 437 ITF-ISKAIQRLTKLQIIYFANS-PFTYDNI----AVDWEDANSDYAKQYENEELSWSNL 490
Query: 208 LFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTG---------QLPHHVSGLLYL 258
L V++ C M +P +L + + A N +L +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Query: 259 TNLDLFGNSLQG-KVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317
+ N+L+ + L + L ++ NK+ ++ F + L ++ L+ NQI
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-LEAFGTNVKLTDLKLDYNQIE- 608
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
IP ++ L S+N L + N S+ + + FS
Sbjct: 609 EIPEDFCAF-----------TDQVEGLGFSHNKLKYIPNIFNAK---SVYVMGSVDFSYN 654
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLR 434
+ + D + + LS N + I T+ L
Sbjct: 655 KIGSEGRNI---------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705
Query: 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF 494
NN + + N L + L + L N L+
Sbjct: 706 NNLMTS-------------IPENSLKP-KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751
Query: 495 TTQLITLHLKNNSLEGHIHDTFENASNIQSFDL------NCNKFEGSLPRSLAKCVKLEV 548
L + + N N+S +++F + N+ P + C L
Sbjct: 752 LPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810
Query: 549 VNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNE 605
+ +G+N I L P L IL + N S+ + + ++ + +
Sbjct: 811 LQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 3e-53
Identities = 93/595 (15%), Positives = 173/595 (29%), Gaps = 102/595 (17%)
Query: 46 NFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDL 105
+ G + + +T L+ + G VP I L++L L T+ R F
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 106 LASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVL 165
+ + + L+ + DL I N ++ + +
Sbjct: 369 ---EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRI 423
Query: 166 YLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIP 225
L +L++ I +I L L+ + F
Sbjct: 424 SLKDTQIG------------------NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465
Query: 226 TSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSV 285
S L LT+++L+ ++P +L+ LP L S+
Sbjct: 466 AVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520
Query: 286 NLAWNKLTGPIDGFQSPN----------SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQF 335
N+A N+ ++ ++ N + P+S
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASAS----------L 569
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR 395
K+ L LD +N + + G L L + E P
Sbjct: 570 QKMVKLGLLDCVHNKVRHLEAFGT------NVKLTDLKLDYNQIEEIPEDF--------- 614
Query: 396 ISKHDSKGWKSLIDLDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQGSILVPPPSTEV 451
+ L S+N L +I + ++D NKI S +
Sbjct: 615 -----CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 452 FL--------VSNNKLSGQIPPYICSLSSLKYLSLSHNNLS-------GTIPPCLGNFTT 496
+ +S N++ + S + + LS+N ++ N T
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN-TY 728
Query: 497 QLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN----- 550
L T+ L+ N L + + D++ N F S P +L+
Sbjct: 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQR 787
Query: 551 -VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604
N I +P + + P L L + SN + + L I+D++ N
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-----RKVDEKLTPQLYILDIADN 837
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 3e-37
Identities = 69/533 (12%), Positives = 149/533 (27%), Gaps = 69/533 (12%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192
N + ++ + D L L N S +
Sbjct: 249 NKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNKE 307
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLP--- 249
L + + + N + + + G +P + G L++ + F ++ T
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367
Query: 250 ----------------------HHVSGLLYLTNLDLFGNSLQ-----GKVPSWLFTLPSL 282
+ L DL +++ +
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKD 427
Query: 283 VSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLC-------GTIRFDQF 335
+ N++T Q L+ ++ + + ++ +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR 395
S LK+L ++L N ++ + Y LP L L+ + + ++
Sbjct: 488 SNLKDLTDVELYNCPNMT-QLPDFL---YDLPELQSLNIACNRGISAAQLKADWTRLADD 543
Query: 396 ISKHDSKGWKSLIDLDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQG-SILVPPPSTE 450
+ + N L +L + LD +NK++
Sbjct: 544 ED-----TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLT 598
Query: 451 VFLVSNNKLSGQIPPYICS-LSSLKYLSLSHNNLSGTIPPCLGNFT-TQLITLHLKNNSL 508
+ N++ +IP C+ ++ L SHN L IP + + ++ N +
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656
Query: 509 EGHIHDTFE-----NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND----- 558
+ N + L+ N+ + A + + + NN++
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 559 --TFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609
+ LL + LR N+ L + L +D+S N F F
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSF 768
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-36
Identities = 67/530 (12%), Positives = 140/530 (26%), Gaps = 136/530 (25%)
Query: 29 STLFRLSHLQSLNLAFNNF------------------LGSRISPEFGRLKELTYLNPSFS 70
+ RL+ LQ + A + F + LK+LT +
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501
Query: 71 NFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFS 130
+P + L +L L ++C + + L T L
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIAC--------------NRGISAAQLKADWTRL----ADD 543
Query: 131 LLNLSSTMTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL 189
+ + ++ + + L +L N +
Sbjct: 544 EDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVR--------------- 586
Query: 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFAS-NHLTGQL 248
+ + G + L + + Y IP + E L S N L +
Sbjct: 587 ---------HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I 634
Query: 249 PHHVS--GLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLE 306
P+ + + + ++D N + + + ++ +N
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN------------------AS 676
Query: 307 EVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS- 365
V L N+I F+ + + LSNN + S + +
Sbjct: 677 TVTLSYNEIQKFPTEL------------FATGSPISTIILSNNLMTSIPENSLKPKDGNY 724
Query: 366 --LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--A 421
L + ++ R + L ++D+S N +
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRAT-------------TLPYLSNMDVSYNCFSSFPTQ 771
Query: 422 LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481
++ +R+ + N++ Q P I + SL L + N
Sbjct: 772 PLNSSQLKAFGIRHQRD---------------AEGNRILRQWPTGITTCPSLIQLQIGSN 816
Query: 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNK 531
++ + L QL L + +N + + L +K
Sbjct: 817 DIR-KVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-25
Identities = 58/429 (13%), Positives = 108/429 (25%), Gaps = 96/429 (22%)
Query: 212 TVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGK 271
+ + N + T + A G++P + L L L +S
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV- 361
Query: 272 VPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
+ + K++I
Sbjct: 362 ----------------------SGRLFGDEELTPDMSEERKHRIRMHYKK---------- 389
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEK 391
+ L DL + + I ++S +
Sbjct: 390 -MFLDYDQRLNLSDLLQDAINRNPEMKPI------KKDSRISLKDTQ------------- 429
Query: 392 IHGRISKHDSKGWKSLIDLDLSNNFLTHI--ALHPWKNIRTLDLRNNKIQGSILVPPPST 449
+ N +T I A+ ++ + N+
Sbjct: 430 ------------------IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN--IAVDW 469
Query: 450 EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509
E K +L L + L + +P L + +L +L++ N
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNRGI 528
Query: 510 G---------HIHDTFENASNIQSFDLNCNKFEG-SLPRSLAKCVKLEVVNVGNNMINDT 559
+ D + IQ F + N E SL K VKL +++ +N +
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H 587
Query: 560 FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ---ALRIIDLSRNEFKDFLPRRNFT 616
G+ L L L N+ + I + + S N+ K N
Sbjct: 588 LEA-FGTNVKLTDLKLDYNQI-----EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641
Query: 617 SMEAMKNVD 625
S+ M +VD
Sbjct: 642 SVYVMGSVD 650
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-15
Identities = 38/285 (13%), Positives = 73/285 (25%), Gaps = 29/285 (10%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPEFGR-LKELTYLNPSFSNFGGLVPS-EISHLSKL 86
L L L +N I +F ++ L S + + + +
Sbjct: 589 EAFGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646
Query: 87 THLGLSCRVLT--IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
+ S + + + S + L + S ++ + LS
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP-ISTIILS 705
Query: 145 GTRIQ-------GNFPDQIFLLPNLRVLYLCGNIHLTG---YLPKCNWSSPLRELDLSLS 194
+ L + L N LT L +D+S +
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPY-LSNMDVSYN 763
Query: 195 DFSGEIPYSIGNLLFLETVDITYC------NFMGSIPTSTGNLSKATEILFASNHLTGQL 248
FS P N L+ I + + PT ++ SN + +
Sbjct: 764 CFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-V 821
Query: 249 PHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT 293
+ L LD+ N + + L ++K
Sbjct: 822 DEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 4e-58
Identities = 95/564 (16%), Positives = 183/564 (32%), Gaps = 53/564 (9%)
Query: 34 LSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS 92
+ + L +FN I F RL LT+L+ + + +L L L+
Sbjct: 32 PNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89
Query: 93 -CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
++ + + S L L T +S I L N + + L L I
Sbjct: 90 ANPLIFMAETAL----SGPKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSNHISSI 144
Query: 152 FPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP-LRELDLSLSD-FSGEIPYSIGNLLF 209
+ F L+VL N + + S L L+L+ I +
Sbjct: 145 KLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203
Query: 210 LETVDITYCNFMGSIPTSTGN--LSKATEILFASNHLTGQLPHHVSGL--LYLTNLDLFG 265
++++ + I N + F P GL + + +++L
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263
Query: 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQ 325
+ + L ++L L+ G ++L+++ L N+ S
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS--- 320
Query: 326 LCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385
S +L L + N +G ++ +L +L +L S+ ++
Sbjct: 321 ---------ASNFPSLTHLSIKGNTKRLELGTGCLE---NLENLRELDLSHDDIETSD-- 366
Query: 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWK---NIRTLDLRNNKIQG-- 440
+ L L+LS N + +K + LDL +++
Sbjct: 367 ----------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 441 --SILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT--T 496
S +V +S++ L L +L++L+L N+ +
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
+L L L L F + + DL+ N+ S +L+ + +N+ +N I
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535
Query: 557 NDTFPCWLGSLPLLKILILRSNRF 580
+ P L L + + LR N
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 1e-41
Identities = 73/454 (16%), Positives = 148/454 (32%), Gaps = 44/454 (9%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
L+ S + + L+ L +D+T C + + + ++ +N L
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNS 304
+SG L +L + L +L S+ L N ++
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 305 LEEVHLEKNQIHGTIPSSLFQLCG-------------TIRFDQFSKLKNLQFLDLSNNNL 351
L+ + + N IH + L Q L+
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 352 LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLD 411
L G ++ SL +F + + + + S+ ++
Sbjct: 215 LLVIFKGL--KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM------------SVESIN 260
Query: 412 LSNNFLTHI---ALHPWKNIRTLDLRNNKIQG--SILVPPPSTEVFLVSNNKLSGQIPPY 466
L ++ +I H + ++ LDL + S LV + + ++S NK
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE--GHIHDTFENASNIQS 524
+ SL +LS+ N + L L L ++ +E + N S++QS
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Query: 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC-WLGSLPLLKILILRSNRFYGP 583
+L+ N+ + +C +LE++++ + +L LLK+L L +
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--- 437
Query: 584 LCKSITTFSFQ---ALRIIDLSRNEFKDFLPRRN 614
+ F AL+ ++L N F ++
Sbjct: 438 --DISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-40
Identities = 78/488 (15%), Positives = 167/488 (34%), Gaps = 54/488 (11%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLT 87
+ L L+ L S I K L L ++ + + KL
Sbjct: 99 TALSGPKALKHLFFIQTGI--SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156
Query: 88 HLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT 146
L + + + S+L + + L L + S+ L+ GT
Sbjct: 157 VLDFQNNAIHYLSKEDM----SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 147 RIQGNFPDQIFL--LPNLRVLYLCGNI--HLTGYLPKCNWSSPLRELDLSLSDFSGEIPY 202
+ + + +L + ++ + + + ++L F
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLD 262
+ L+ +D+T + +P+ LS +++ ++N S LT+L
Sbjct: 273 TFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 263 LFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG---PIDGFQSPNSLEEVHLEKNQIHGT 318
+ GN+ + ++ + L +L ++L+ + + ++ + L+ ++L N+ +
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-S 390
Query: 319 IPSSLF--------------QLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKY 364
+ + F +L F L L+ L+LS++ L + +
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS----SEQLFD 446
Query: 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---A 421
LP+L L+ + + NS + L L LS L+ I A
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNS-----------LQTLGRLEILVLSFCDLSSIDQHA 495
Query: 422 LHPWKNIRTLDLRNNKIQG---SILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478
K + +DL +N++ L + L ++N +S +P + LS + ++L
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL-ASNHISIILPSLLPILSQQRTINL 554
Query: 479 SHNNLSGT 486
N L T
Sbjct: 555 RQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-27
Identities = 79/495 (15%), Positives = 142/495 (28%), Gaps = 95/495 (19%)
Query: 1 ICDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLG-SRISPEFGRL 59
I + + L+ + I + L + S E
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLG 119
+ +N F + + S L L L+ L+ L+ L L L
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL----VGLSTLKKLVLS 309
Query: 120 STNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLP 178
+ + S N S +T L + G + L NLR L L + +
Sbjct: 310 ANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIE---- 363
Query: 179 KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEIL 238
S + NL L++++++Y + + + +
Sbjct: 364 -----------------TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 239 FASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--- 294
A L + L L L+L + L LP+L +NL N
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466
Query: 295 -PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
+ Q+ LE + L + + F+ LK + +DLS+N L S
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHA------------FTSLKMMNHVDLSHNRLTS 514
Query: 354 FTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413
+ + S+ I L+L+
Sbjct: 515 SSIE---------------ALSHL----------------------------KGIYLNLA 531
Query: 414 NNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC-S 469
+N ++ I L RT++LR N + + + N + +C +
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE--WYKENMQKLEDTEDTLCEN 589
Query: 470 LSSLKYLSLSHNNLS 484
L+ + LS LS
Sbjct: 590 PPLLRGVRLSDVTLS 604
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 1e-53
Identities = 93/568 (16%), Positives = 175/568 (30%), Gaps = 64/568 (11%)
Query: 35 SHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS- 92
S ++++L+FN + F EL +L+ S + L L++L L+
Sbjct: 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89
Query: 93 CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG-N 151
+ + +F S LT L L T L+ ++ F + L + + L+++ I
Sbjct: 90 NPIQSFSPGSF----SGLTSLENLVAVETKLASLESFPIGQLIT-LKKLNVAHNFIHSCK 144
Query: 152 FPDQIFLLPNLRVLYLCGN----IHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL 207
P L NL + L N I + LD+SL+ I
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG 203
Query: 208 LFLETVDITYCNFMGSIPTSTGNLSKATEIL-------FASNHLTGQLPHHVSGL--LYL 258
+ L + + +I + + +L P + GL + +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263
Query: 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGT 318
L + L ++ +++LA + ++ + + + + Q+
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLKQF 322
Query: 319 IPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCN 378
L L+ L L+ N LPSL L S
Sbjct: 323 ---------------PTLDLPFLKSLTLTMNKGSISFKKVA------LPSLSYLDLSRNA 361
Query: 379 VSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--ALHPWKNIRTLDLRNN 436
+S + G SL LDLS N + + ++ LD +++
Sbjct: 362 LSFSGCCS------------YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS 409
Query: 437 KIQG----SILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG 492
++ S + +S L+SL L ++ N+ +
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 493 NFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552
TT L L L LE F+ +Q +++ N + L ++
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 553 NNMINDTFPCWLGSLPLLKILILRSNRF 580
N I + L L +N
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 4e-47
Identities = 82/546 (15%), Positives = 179/546 (32%), Gaps = 48/546 (8%)
Query: 97 TIEQRTFDLLASNLTK--------LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRI 148
+ T+ + L+K + L L ++K +S N S + LDLS I
Sbjct: 10 VVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEI 68
Query: 149 QGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC-NWSSPLRELDLSLSDFSGEIPYSIGNL 207
+ L +L L L GN + + P + + L L + + + IG L
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 208 LFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTN----LD 262
+ L+ +++ + +P NL+ + + N++ + + L LD
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 263 LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI--DGFQSPNSLEEVHLEKNQIHGTIP 320
+ N + + F L + L N + I Q+ L L +
Sbjct: 188 MSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246
Query: 321 SSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS 380
+F+ L ++ + F+ +I + L ++ +S + ++
Sbjct: 247 LEIFEP------SIMEGLCDVTIDEFRLTYTNDFSD--DIVKFHCLANVSAMSLAGVSIK 298
Query: 381 EFPSF-----LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLR 434
++ I ++ + + L L L+ N + ++ LDL
Sbjct: 299 YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLS 358
Query: 435 NNKIQGSI-----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPP 489
N + S + S +S N + L L++L H+ L
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEF 417
Query: 490 CLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS-LAKCVKLEV 548
+L+ L + + + F +++ + + N F+ + + A L
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 549 VNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ---ALRIIDLSRNE 605
+++ + +L L++L + N + + + +L +D S N
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL-----LFLDSSHYNQLYSLSTLDCSFNR 532
Query: 606 FKDFLP 611
+
Sbjct: 533 IETSKG 538
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-38
Identities = 83/476 (17%), Positives = 152/476 (31%), Gaps = 42/476 (8%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
+ +DLS + YS N L+ +D++ C + L + ++ N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPN 303
P SGL L NL L + L +L +N+A N + F +
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCG----------------TIRFDQFSKLKNLQFLDLS 347
+L V L N I + L L I+ F + L L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLR 212
Query: 348 NNNLLSFTSSGNIDIKYSLP--SLLKLSFSNCNVSEFPS-------------FLRNSEKI 392
N S + L L+ F + E R +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 393 HGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEV 451
++ + L+ + ++ + ++L + +++ + P +
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332
Query: 452 FLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF-TTQLITLHLKNNSLEG 510
++ NK S I +L SL YL LS N LS + + T L L L N
Sbjct: 333 LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI- 389
Query: 511 HIHDTFENASNIQSFDLNCNKFEGSLPRS-LAKCVKLEVVNVGNNMINDTFPCWLGSLPL 569
+ F +Q D + + S KL +++ F L
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 570 LKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
L L + N F ++ + L +DLS+ + + + F ++ ++ ++
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFA-NTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLN 503
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-35
Identities = 79/497 (15%), Positives = 149/497 (29%), Gaps = 77/497 (15%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGL-VPSEISHLSKL 86
+ L+ L++L + + G+L L LN + + +P+ S+L+ L
Sbjct: 98 GSFSGLTSLENLVAVETKL--ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 87 THLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
H+ LS + TI L N L + + I+ + + + +L L G
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK--LHELTLRG 213
Query: 146 TRIQGNFPDQIFL-LPNLRVLYLCGNI--------HLTGYLPKCNWSSPLRELDLSLSDF 196
N L L V L + + + E L+ ++
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273
Query: 197 SGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT----------- 245
+ L + + + + K + L
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331
Query: 246 --------GQLPHHVSGLLYLTNLDLFGNSLQGKVPS--WLFTLPSLVSVNLAWNKLTGP 295
G + L L+ LDL N+L SL ++L++N
Sbjct: 332 SLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391
Query: 296 IDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFT 355
F L+ + + + + S F L+ L +LD+S N
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAF-----------LSLEKLLYLDISYTNTKIDF 440
Query: 356 SSGNIDIKYSLPSLLKLSFSNCNVSEF--PSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413
I L SL L + + + + N+ +L LDLS
Sbjct: 441 D----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANT---------------TNLTFLDLS 481
Query: 414 NNFLTHI---ALHPWKNIRTLDLRNNKIQG---SILVPPPSTEVFLVSNNKLSGQIPPYI 467
L I ++ L++ +N + S S S N++
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541
Query: 468 CSLSSLKYLSLSHNNLS 484
SL + +L++N+++
Sbjct: 542 HFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 62/336 (18%), Positives = 103/336 (30%), Gaps = 30/336 (8%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISH 82
I + S + L + F L ++ ++ + + L ++
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPK 305
Query: 83 LSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142
K L + L +L L L L S+ L +++ LD
Sbjct: 306 HFKWQSLSIIRCQLK------QFPTLDLPFLKSLTLTMNKGSISFKKVAL---PSLSYLD 356
Query: 143 LSGTRIQ--GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEI 200
LS + G +LR L L N L+ LD S
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 201 PYS-IGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYL 258
+S +L L +DI+Y N L+ + A N +V + L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475
Query: 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHG 317
T LDL L+ TL L +N++ N L + SL + N+I
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
+ K+L F +L+NN++
Sbjct: 536 SKGIL------------QHFPKSLAFFNLTNNSVAC 559
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 4e-46
Identities = 120/608 (19%), Positives = 221/608 (36%), Gaps = 68/608 (11%)
Query: 34 LSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-SHLSKLTHLGL 91
L+ + L L+FN ++ F L++L L + E +L L L L
Sbjct: 23 LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80
Query: 92 S-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLS--LIKPFSLLNLSSTMTDLDLSGTRI 148
++ + F L L L L LS ++K NL + +T LDLS +I
Sbjct: 81 GSSKIYFLHPDAF----QGLFHLFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKNQI 135
Query: 149 QGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL 207
+ + F L +L+ + N + + + PL+ LS + YS ++
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSN-QIF-LVCEHELE-PLQGKTLSFFSLAANSLYSRVSV 192
Query: 208 LFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNS 267
+ + ++ + + S + F SN ++ + ++ ++
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNF-SNAISKSQAFSLILAHHIMGAGFGFHN 251
Query: 268 LQGKVPSWLFT---LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSL 323
++ F S+ ++L+ + F++ L+ ++L N+I+
Sbjct: 252 IK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN------- 303
Query: 324 FQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFP 383
I + F L NLQ L+LS N L S Y LP + + +++
Sbjct: 304 -----KIADEAFYGLDNLQVLNLSYNLLGELYS----SNFYGLPKVAYIDLQKNHIAI-- 352
Query: 384 SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSIL 443
I K + L LDL +N LT I H +I + L NK+ ++
Sbjct: 353 ------------IQDQTFKFLEKLQTLDLRDNALTTI--HFIPSIPDIFLSGNKLV-TLP 397
Query: 444 VPPPSTEVFLVSNNKLSG-QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLH 502
+ + +S N+L I ++ + L+ L L+ N S + L L
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 503 LKNNSLEGHIH-----DTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557
L N L+ D FE S++Q LN N P + L +++ +N +
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Query: 558 DTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTS 617
L L+IL + N+ + F +L ++D++ N+F F +
Sbjct: 518 VLSHNDL--PANLEILDISRNQL-----LAPNPDVFVSLSVLDITHNKFICECELSTFIN 570
Query: 618 MEAMKNVD 625
NV
Sbjct: 571 WLNHTNVT 578
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-30
Identities = 79/474 (16%), Positives = 154/474 (32%), Gaps = 40/474 (8%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHL 244
L LS + S L L+ +++ +I NL + S+ +
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
Query: 245 TGQLPHHVSGLLYLTNLDLFGNSLQGKV--PSWLFTLPSLVSVNLAWNKLT--GPIDGFQ 300
P GL +L L L+ L V + L +L ++L+ N++ F
Sbjct: 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145
Query: 301 SPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360
NSL+ + NQI L L + K L F L+ N+L S S
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPL----------QGKTLSFFSLAANSLYSRVSVDWG 195
Query: 361 DIKYSLP--SLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418
L L S + + ++ + ++ + +
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI--SKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 419 HIALH-----PWKNIRTLDLRNNKI---QGSILVPPPSTEVFLVSNNKLSGQIPPYI-CS 469
+ ++R LDL + + + +V ++ NK++ +I
Sbjct: 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYG 312
Query: 470 LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529
L +L+ L+LS+N L + ++ + L+ N + TF+ +Q+ DL
Sbjct: 313 LDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSIT 589
N ++ + + + N + L ++ L NR L
Sbjct: 372 NALT-----TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLEN-LDILYF 421
Query: 590 TFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDESV 643
L+I+ L++N F + + +++ + LQ V
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 2e-39
Identities = 99/563 (17%), Positives = 178/563 (31%), Gaps = 80/563 (14%)
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGS 120
L+ SF+ L +L L LS C + TIE + +L+ LS L L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTG 85
Query: 121 TNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC 180
+ + + LSS + L T + I L L+ L + N +
Sbjct: 86 NPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQ------ 137
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240
S ++P NL LE +D++ T L +
Sbjct: 138 ----------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----- 176
Query: 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI--DG 298
L +LDL N + + F L + L N + +
Sbjct: 177 ---------------LLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
Q LE L + L NL + L +
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLE------KFDKSALEGLCNLTIEEFRLAYL-DYYLDD 273
Query: 359 NIDIKYSLPSLLKLSFSNCNVSEFPSF-----LRNSEKIHGRISKHDSKGWKSLIDLDLS 413
ID+ L ++ S + + F ++ E ++ + + + KSL L +
Sbjct: 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 414 NNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVP-----PPSTEVFLVSNNKLSGQIPPYI 467
+N + + ++ LDL N + S + +S N + +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392
Query: 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL 527
L L++L H+NL + LI L + + + F S+++ +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 528 NCNKFEGSLPR-SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586
N F+ + + L +++ + P SL L++L + SN+ K
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-----K 507
Query: 587 SITTFSFQ---ALRIIDLSRNEF 606
S+ F +L+ I L N +
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPW 530
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 4e-39
Identities = 104/549 (18%), Positives = 179/549 (32%), Gaps = 77/549 (14%)
Query: 35 SHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS- 92
++L+L+FN + F EL L+ S + LS L+ L L+
Sbjct: 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 93 CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ-GN 151
+ ++ F L+ L L TNL+ ++ F + +L + + +L+++ IQ
Sbjct: 86 NPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFK 140
Query: 152 FPDQIFLLPNLRVLYLCGN----IHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL 207
P+ L NL L L N I+ T LDLSL+ + I
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 208 LFLETVDITYCNFMGSIPTSTGNLSKATEIL-------FASNHLTGQLPHHVSGL--LYL 258
+ L + + ++ + E+ +L + GL L +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 259 TNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQI 315
L LF L ++ S +L + LE V+ + Q
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319
Query: 316 HGTIPSSLFQL----CGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLK 371
SL +L L +L+FLDLS N L D + SL
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD--FGTTSLKY 377
Query: 372 LSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI----ALHPWKN 427
L S V S + L LD ++ L + +N
Sbjct: 378 LDLSFNGVITMSSNFLGL---------------EQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICS-LSSLKYLSLSHNNLSGT 486
+ LD+ + + I + LSSL+ L ++ N+
Sbjct: 423 LIYLDISHTHTRV----------------------AFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 487 IPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS-LAKCVK 545
P + L L L LE F + S++Q ++ N+ + S+P +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTS 519
Query: 546 LEVVNVGNN 554
L+ + + N
Sbjct: 520 LQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 1e-36
Identities = 101/536 (18%), Positives = 174/536 (32%), Gaps = 69/536 (12%)
Query: 28 NSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
+ + F LQ L+L+ I + L L+ L + + L S LS L
Sbjct: 45 SYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 87 THLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
L + ++E +L L L++ + K + + + LDLS
Sbjct: 103 QKLVAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 146 TRIQGNFPDQIFLLPNLRV----LYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIP 201
+IQ + + +L + + L L N + P L +L L + S +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 202 -YSIGNLLFLETVDITYCNFMGS---IPTSTGNLSKATEILFASNHLTG------QLPHH 251
I L LE + F L + L +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277
Query: 252 VSGLLYLTNLDLFGNSLQGKVP-SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHL 310
+ L +++ L +++ S+ F L VN + + SL+ +
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-----TLKLKSLKRLTF 332
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370
N+ L +L+FLDLS N L D + SL
Sbjct: 333 TSNKGGNAFS--------------EVDLPSLEFLDLSRNGLSFKGCCSQSD--FGTTSLK 376
Query: 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI----ALHPWK 426
L S V S + L LD ++ L + +
Sbjct: 377 YLDLSFNGVITMSSNFLGL---------------EQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 427 NIRTLDLRNNKIQG---SILVPPPSTEVFLVSNNKLSGQIPPYI-CSLSSLKYLSLSHNN 482
N+ LD+ + + I S EV ++ N P I L +L +L LS
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538
L + P N + L L++ +N L+ F+ +++Q L+ N ++ S PR
Sbjct: 482 LE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 7e-30
Identities = 89/477 (18%), Positives = 159/477 (33%), Gaps = 43/477 (9%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
+ LDLS + YS + L+ +D++ C + +LS + ++ N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT--GPIDGFQSPN 303
SGL L L +L + L +L +N+A N + + F +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCG----------------TIRFDQFSKLKNLQFLDLS 347
+LE + L N+I + L L I+ F ++ L L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLR 208
Query: 348 NNNLLSFTSSGNIDIKYSLPSL---LKLSFSNCNVSEFPSF----LRNSEKIHGRISKHD 400
NN I L L + N+ +F L N R++ D
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 401 SKGWK---------SLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTE 450
++ L + + + + L+L N K + S +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG-TIPPCLGNFTTQLITLHLKNNSLE 509
++NK L SL++L LS N LS TT L L L N +
Sbjct: 329 RLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRS-LAKCVKLEVVNVGNNMINDTFPCWLGSLP 568
+ F ++ D + + S L +++ + F L
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 569 LLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
L++L + N F I T + L +DLS+ + + L F S+ +++ ++
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLN 500
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 74/320 (23%)
Query: 186 LRELDLSLSDFSGE--IPYSIGNLLFLETVDITYCN-FMGSIPTSTGNLSKATEILFASN 242
+ LDLS + IP S+ NL +L + I N +G IP + L++ +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 243 HLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI--DGFQ 300
+++G +P +S + L LD N+L G +P + +LP+LV + N+++G I
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 301 SPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360
+ + +N++ G IP + L NL F+DLS N L G+
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL-------------NLAFVDLSRNML-----EGDA 213
Query: 361 DIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT-H 419
F + K+ + L+ N L
Sbjct: 214 ------SV----LFGSD---------------------------KNTQKIHLAKNSLAFD 236
Query: 420 I-ALHPWKNIRTLDLRNNKIQGSILVPPPST------EVFLVSNNKLSGQIPPYICSLSS 472
+ + KN+ LDLRNN+I G++ P VS N L G+IP +L
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR 292
Query: 473 LKYLSLSHNN-LSGT-IPPC 490
+ ++N L G+ +P C
Sbjct: 293 FDVSAYANNKCLCGSPLPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 75/300 (25%), Positives = 109/300 (36%), Gaps = 61/300 (20%)
Query: 1 ICDNVT--GNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGR 58
+CD T V LDL G L S+L L +L L + N L I P +
Sbjct: 42 LCDTDTQTYRVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 59 LKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHL 118
L +L YL + +N G +P +S + L
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVT------------------------------ 129
Query: 119 GSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP 178
LD S + G P I LPNL + GN ++G +P
Sbjct: 130 ----------------------LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIP 166
Query: 179 KC--NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE 236
++S + +S + +G+IP + NL L VD++ G G+ +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 237 ILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI 296
I A N L L V L LDL N + G +P L L L S+N+++N L G I
Sbjct: 226 IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 9e-36
Identities = 69/289 (23%), Positives = 105/289 (36%), Gaps = 57/289 (19%)
Query: 333 DQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS---LPSLLKLSFSNCNVSEFPSFLRNS 389
D ++ + LDLS NL I S LP L L N
Sbjct: 44 DTDTQTYRVNNLDLSGLNL-----PKPYPIPSSLANLPYLNFLYIGGIN----------- 87
Query: 390 EKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPST 449
+ G I ++ L + L + + + G+I P
Sbjct: 88 -NLVGPIPP-------AIAKL---------------TQLHYLYITHTNVSGAI----PDF 120
Query: 450 -------EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLH 502
S N LSG +PP I SL +L ++ N +SG IP G+F+ ++
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 503 LKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC 562
+ N L G I TF N N+ DL+ N EG + +++ N +
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238
Query: 563 WLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611
+G L L LR+NR YG L + +T F L +++S N +P
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIP 285
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 29/134 (21%)
Query: 500 TLHLKNNSLEGHIHDTFENASNIQSFDLNCNK---------------------------F 532
T N + G + DT + + DL+
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 533 EGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFS 592
G +P ++AK +L + + + ++ P +L + L L N G L SI S
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SS 147
Query: 593 FQALRIIDLSRNEF 606
L I N
Sbjct: 148 LPNLVGITFDGNRI 161
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 1e-36
Identities = 98/524 (18%), Positives = 179/524 (34%), Gaps = 64/524 (12%)
Query: 34 LSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS 92
+ ++SL+L+FN + I L L S + L L HL LS
Sbjct: 25 TAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 93 -CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
+ ++ F L+ L L+L + SL + + L +
Sbjct: 83 DNHLSSLSSSWFG----PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 152 FPDQIFL-LPNLRVLYLCGNIHLTGYLPKC-NWSSPLRELDLS---LSDFSGEIPYSIGN 206
F L +L L + L Y + + L L + + +
Sbjct: 139 IRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 207 LLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT----GQLPHHVSGLLYLTNLD 262
+ +LE D F S S ++ F + LT +L + +L L+ ++
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 263 LFGNSLQG------KVPSWLFTLPSLVSVNLAWNKLTG------PIDGFQSPNSLEEVHL 310
+L G + L + +V + + + ++ + +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370
E +++ +P S Q LK+L+FLDLS N ++ + + PSL
Sbjct: 318 ENSKVF-LVPCSFSQ-----------HLKSLEFLDLSENLMVEEYLKNSACKG-AWPSLQ 364
Query: 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--ALHPWKNI 428
L S ++ + K+L LD+S N + + + +
Sbjct: 365 TLVLSQNHLRSMQK------------TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412
Query: 429 RTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP 488
R L+L + I+ P + EV VSNN L L L+ L +S N L T+P
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLP 467
Query: 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKF 532
L+ + + N L+ F+ +++Q L+ N +
Sbjct: 468 DAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-31
Identities = 83/511 (16%), Positives = 191/511 (37%), Gaps = 48/511 (9%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK--CNWSSPLRELD 190
L++ M LDLS +I + NL+VL L + + + L LD
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RIN-TIEGDAFYSLGSLEHLD 80
Query: 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST--GNLSKATEILFASNHLTGQL 248
LS + S G L L+ +++ N ++ ++ NL+ + + ++
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139
Query: 249 PHHV-SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLE 306
+GL L L++ SL+ L ++ + + L ++ ++ +S+
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199
Query: 307 EVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSL 366
+ L + S ++ L + L + + + + +
Sbjct: 200 YLELRDTNLARFQFSP---------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250
Query: 367 PSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALH 423
L ++ F +C ++ F + + + K ++ ++ L + +L +
Sbjct: 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV---TIRRLHIPQFYLFYDLSTVYS 307
Query: 424 PWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQIPPY---ICSLSSLKYLS 477
+ ++ + + N+K+ S S E +S N + + + SL+ L
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Query: 478 LSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGS 535
LS N+L ++ L +L + N+ + D+ + ++ +L+
Sbjct: 368 LSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-V 424
Query: 536 LPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSF-Q 594
+ + + LEV++V NN ++ LP L+ L + N+ K++ S
Sbjct: 425 VKTCIPQ--TLEVLDVSNNNLDSFSL----FLPRLQELYISRNKL-----KTLPDASLFP 473
Query: 595 ALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
L ++ +SRN+ K +P F + +++ +
Sbjct: 474 VLLVMKISRNQLK-SVPDGIFDRLTSLQKIW 503
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 8e-24
Identities = 71/413 (17%), Positives = 140/413 (33%), Gaps = 34/413 (8%)
Query: 212 TVDITYCNFMGSIPTSTGNLSKATEILFAS-NHLTGQLPHHVSGLLYLTNLDLFGNSLQG 270
D +F SIP+ L+ A + L S N +T + L L L + +
Sbjct: 9 VCDGRSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 271 KVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGT 329
++L SL ++L+ N L+ F +SL+ ++L N T+ +
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSL----- 118
Query: 330 IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS----F 385
F L NLQ L + N S + L SL +L ++ + S
Sbjct: 119 -----FPNLTNLQTLRIGNVETFSEIRRIDFA---GLTSLNELEIKALSLRNYQSQSLKS 170
Query: 386 LRNSEKIH------GRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQ 439
+R+ + + + + S+ L+L + L P + + K+
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL-PVDEVSSPMKKLA 229
Query: 440 GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLI 499
V + L+ + ++ +L L + + S + T +
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289
Query: 500 TLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT 559
LH+ L + + ++ + +K LE +++ N++ +
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 560 FPCW---LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609
+ G+ P L+ L+L N + + L +D+SRN F
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 28/276 (10%)
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHD 400
D + + S S ++ L S ++ I D
Sbjct: 7 SGVCDGRSRSFTSIPSG-------LTAAMKSLDLSFNKITY--------------IGHGD 45
Query: 401 SKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLV 454
+ +L L L ++ + I A + ++ LDL +N + S P S + +
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
Query: 455 SNNKLSG-QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIH 513
N + +L++L+ L + + I T L L +K SL +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 514 DTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKIL 573
+ ++ +I L+ ++ L + + + + + L + +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 574 ILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609
+ R +S I++LS EF D
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 6e-13
Identities = 57/305 (18%), Positives = 112/305 (36%), Gaps = 24/305 (7%)
Query: 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLG 90
+ +FN L ++ L E+ + + + + G PSE +S+L +
Sbjct: 227 KLAFRGSVLTDESFNELL--KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284
Query: 91 -LSCRVLTIEQRTFDLLA----SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
++ R L I Q S L K+ + + ++ + L+ +L S + LDLS
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS-LEFLDLSE 343
Query: 146 TRIQGNFPDQ---IFLLPNLRVLYLCGN--IHLTGYLPKCNWSSPLRELDLSLSDFSGEI 200
+ + P+L+ L L N + L LD+S + F +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402
Query: 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTN 260
P S + ++++ + + T + ++N+L L L
Sbjct: 403 PDSCQWPEKMRFLNLSS-TGIRVVKT--CIPQTLEVLDVSNNNLD-SFS---LFLPRLQE 455
Query: 261 LDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTI 319
L + N L+ +P P L+ + ++ N+L P F SL+++ L N +
Sbjct: 456 LYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513
Query: 320 PSSLF 324
P +
Sbjct: 514 PRIDY 518
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 7/159 (4%)
Query: 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL 527
S + + + +IP T + +L L N + H +N+Q L
Sbjct: 2 LSCDASGVCDGRSRSFT-SIPS---GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57
Query: 528 NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG-PLCK 586
++ + LE +++ +N ++ W G L LK L L N + +
Sbjct: 58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 587 SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
+ L+ + + E + R +F + ++ ++
Sbjct: 118 LFPNLT--NLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-32
Identities = 93/477 (19%), Positives = 166/477 (34%), Gaps = 84/477 (17%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
+ L + LG TN++ + L +T L I+ D + L NL +
Sbjct: 21 TALAEKMKTVLGKTNVTDTVSQTDL---DQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
N LT P N + L ++ ++ + + P + NL L + + P
Sbjct: 76 SNN-QLTDITPLKNLTK-LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPL- 130
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNL 287
NL+ + +SN ++ +SGL L L GN + P L L +L +++
Sbjct: 131 -KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDI 184
Query: 288 AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLS 347
+ NK++ I +LE + NQI P L NL L L+
Sbjct: 185 SSNKVSD-ISVLAKLTNLESLIATNNQISDITP--------------LGILTNLDELSLN 229
Query: 348 NNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSL 407
N L + + L +L L +N +S G L
Sbjct: 230 GNQLKDIGTLAS------LTNLTDLDLANNQISNLAPL----------------SGLTKL 267
Query: 408 IDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPY 466
+L L N +++I L + L+L N+++
Sbjct: 268 TELKLGANQISNISPLAGLTALTNLELNENQLED-----------------------ISP 304
Query: 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFD 526
I +L +L YL+L NN+S P + + T +L L NN + + N +NI
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSDV--SSLANLTNINWLS 359
Query: 527 LNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583
N+ P LA ++ + + + + + ++ + + + P
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP 414
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 101/521 (19%), Positives = 179/521 (34%), Gaps = 75/521 (14%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
I+ T L+ L N + L ++T L G + +L+
Sbjct: 14 INQIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQ--ADRLGIKSIDGVEYLN 68
Query: 85 KLTHLGLSCRVLTIEQRTFDLLA-SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
LT + S LT D+ NLTKL + + + ++ I P + L + +T L L
Sbjct: 69 NLTQINFSNNQLT------DITPLKNLTKLVDILMNNNQIADITPLANL---TNLTGLTL 119
Query: 144 SGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS--LSDFSGEIP 201
+I D + L NL L L N ++ +S L++L ++D
Sbjct: 120 FNNQITD--IDPLKNLTNLNRLELSSN-TISDISALSGLTS-LQQLSFGNQVTDLK---- 171
Query: 202 YSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNL 261
+ NL LE +DI+ S + L+ ++ +N ++ P + L L L
Sbjct: 172 -PLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226
Query: 262 DLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPS 321
L GN L+ L +L +L ++LA N+++ + L E+ L NQI P
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISP- 282
Query: 322 SLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSE 381
+ L L L+L+ N L + N L +L L+ N+S+
Sbjct: 283 -------------LAGLTALTNLELNENQLEDISPISN------LKNLTYLTLYFNNISD 323
Query: 382 FPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQG 440
L L NN ++ + +L NI L +N+I
Sbjct: 324 ISPV----------------SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD 367
Query: 441 SI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLI 499
L +++ + Y +++ + N I P +
Sbjct: 368 LTPLANLTRITQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYT 424
Query: 500 TLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL 540
+ N ++ S + F G++ + L
Sbjct: 425 EPDITWNLPSYTNEVSYTF-SQPVTIGKGTTTFSGTVTQPL 464
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-30
Identities = 86/418 (20%), Positives = 166/418 (39%), Gaps = 50/418 (11%)
Query: 210 LETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269
L + IT + I T T L++ + + ++T + + L +T L ++
Sbjct: 3 LGSATITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59
Query: 270 GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGT 329
+ L +L +N + N+LT I ++ L ++ + NQI P
Sbjct: 60 S--IDGVEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADITP--------- 107
Query: 330 IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF--LR 387
+ L NL L L NN + N L +L +L S+ +S+ + L
Sbjct: 108 -----LANLTNLTGLTLFNNQITDIDPLKN------LTNLNRLELSSNTISDISALSGLT 156
Query: 388 NSEK--IHGRISKHDS-KGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSI- 442
+ ++ +++ +L LD+S+N ++ I L N+ +L NN+I
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 216
Query: 443 LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLH 502
L + + ++ N+L + SL++L L L++N +S P L T +L L
Sbjct: 217 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLT-KLTELK 271
Query: 503 LKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC 562
L N + + + + +LN N+ E P ++ L + + N I+D P
Sbjct: 272 LGANQISNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326
Query: 563 WLGSLPLLKILILRSNRFYGPLCKSITTFS-FQALRIIDLSRNEFKDFLPRRNFTSME 619
+ SL L+ L +N+ +++ + + + N+ D P N T +
Sbjct: 327 -VSSLTKLQRLFFYNNKV-----SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT 378
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 8e-14
Identities = 65/335 (19%), Positives = 115/335 (34%), Gaps = 62/335 (18%)
Query: 20 WLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSE 79
+ D L L+ L+ L+++ N S IS +L L L + + + +
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKV--SDISV-LAKLTNLESLIATNNQISDI--TP 216
Query: 80 ISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138
+ L+ L L L+ ++ I ++LT L+ L L + +S + P S L + +
Sbjct: 217 LGILTNLDELSLNGNQLKDIGT------LASLTNLTDLDLANNQISNLAPLSGL---TKL 267
Query: 139 TDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSG 198
T+L L +I P + L L L L N L D S
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNEN---------------------QLEDISP 304
Query: 199 EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYL 258
I NL L + + + N P S +L+K + F +N ++ ++ L +
Sbjct: 305 -----ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNI 355
Query: 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGT 318
L N + P L L + + L T +++ S+ KN
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN--TVKNVTGAL 411
Query: 319 IPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
I + S + D++ N
Sbjct: 412 IAPA-----------TISDGGSYTEPDITWNLPSY 435
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-31
Identities = 98/546 (17%), Positives = 187/546 (34%), Gaps = 104/546 (19%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
+ LQ +N + + E +K T ++S + P ++ L
Sbjct: 10 NTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR- 66
Query: 94 RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP 153
D L +L L +LG ++L P +L S L S + P
Sbjct: 67 ----------DCLDRQAHELELNNLGLSSL----PELPPHLES----LVASCNSLT-ELP 107
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETV 213
+ L +L V L+ P L L +S + ++P + N FL+ +
Sbjct: 108 ELPQSLKSLLVDNNNLK-ALSDLPPL------LEYLGVSNNQLE-KLP-ELQNSSFLKII 158
Query: 214 DITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273
D+ N + +P +L I +N L +LP + L +LT + NSL+ K+P
Sbjct: 159 DV-DNNSLKKLPDLPPSL---EFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP 211
Query: 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFD 333
+L S+ N L + Q+ L ++ + N + T+P
Sbjct: 212 DLPLSLESI---VAGNNILEE-LPELQNLPFLTTIYADNNLLK-TLPDLP---------- 256
Query: 334 QFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIH 393
+L+ L++ +N L SL L S S
Sbjct: 257 -----PSLEALNVRDNYLTDLPEL--------PQSLTFLDVSENIFSGLSELP------- 296
Query: 394 GRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL 453
+L L+ S+N + + ++ L++ NNK+ + PP E +
Sbjct: 297 -----------PNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLI-ELPALPPRLERLI 343
Query: 454 VSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIH 513
S N L+ ++P +LK L + +N L P + + L + ++ +
Sbjct: 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPES----VEDLRMNSH-----LA 389
Query: 514 DTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKIL 573
+ E N++ + N P +E + + + + D + + L+
Sbjct: 390 EVPELPQNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDD 445
Query: 574 ILRSNR 579
+ +
Sbjct: 446 VFEHHH 451
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 8e-24
Identities = 66/418 (15%), Positives = 125/418 (29%), Gaps = 76/418 (18%)
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
I + FL+ + + + +P N+ TE A + P +
Sbjct: 3 INPRNVSNTFLQEPLR-HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTI 319
L + + L L+ + P LE + N + +
Sbjct: 62 VSRLRDCLDR-----------QAHELELNNLGLS---SLPELPPHLESLVASCNSLT-EL 106
Query: 320 PSSLFQL----CGTIRFDQFSKL-KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSF 374
P L S L L++L +SNN L N L +
Sbjct: 107 PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN------SSFLKIIDV 160
Query: 375 SNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDL 433
N ++ + P + L + NN L + L + +
Sbjct: 161 DNNSLKKLPDLPPS------------------LEFIAAGNNQLEELPELQNLPFLTAIYA 202
Query: 434 RNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGN 493
NN ++ + P S E + NN L P + +L L + +N L T+P +
Sbjct: 203 DNNSLK-KLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS 258
Query: 494 FTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553
L L++++N L + + ++ + + + + P L +N +
Sbjct: 259 ----LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASS 306
Query: 554 NMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF--SFQALRIIDLSRNEFKDF 609
N I P L+ L + +N+ + L + S N +
Sbjct: 307 NEIRS----LCDLPPSLEELNVSNNK--------LIELPALPPRLERLIASFNHLAEV 352
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 4e-23
Identities = 73/408 (17%), Positives = 135/408 (33%), Gaps = 87/408 (21%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYC------------NFMGSIPTSTGNLSK 233
E + S++ P G + + C + S+P +L
Sbjct: 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL-- 93
Query: 234 ATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT 293
++ + N LT +LP L L + +L P L + ++ N+L
Sbjct: 94 -ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLE 144
Query: 294 GPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
+ Q+ + L+ + ++ N + +P +L+F+ NN L
Sbjct: 145 K-LPELQNSSFLKIIDVDNNSLK-KLPDL---------------PPSLEFIAAGNNQLEE 187
Query: 354 FTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413
N LP L + N ++ + P + L +
Sbjct: 188 LPELQN------LPFLTAIYADNNSLKKLPDLPLS------------------LESIVAG 223
Query: 414 NNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSS 472
NN L + L + T+ NN ++ ++ PPS E V +N L+ +P SL+
Sbjct: 224 NNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTF 281
Query: 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKF 532
L + LS P L L+ +N I + +++ +++ NK
Sbjct: 282 LDVSENIFSGLSELPP--------NLYYLNASSN----EIRSLCDLPPSLEELNVSNNKL 329
Query: 533 EGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
LP +LE + N + P + LK L + N
Sbjct: 330 I-ELPALPP---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPL 369
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 3e-22
Identities = 88/492 (17%), Positives = 168/492 (34%), Gaps = 87/492 (17%)
Query: 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGL------------VPS 78
+ A++ + + P G +E+ +P
Sbjct: 30 AENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88
Query: 79 EISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138
HL L SC LT L +L L + + LS +L +
Sbjct: 89 LPPHL---ESLVASCNSLT----ELPELPQSLKSLLVDNNNLKALS--------DLPPLL 133
Query: 139 TDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSG 198
L +S +++ P+ + L+++ + N L LP S L + +
Sbjct: 134 EYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNN-SLK-KLPDLPPS--LEFIAAGNNQLE- 186
Query: 199 EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYL 258
E+P + NL FL + N + +P +L I+ +N L + L +L
Sbjct: 187 ELP-ELQNLPFLTAIYADN-NSLKKLPDLPLSL---ESIVAGNNILE--ELPELQNLPFL 239
Query: 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGT 318
T + N L+ +P PSL ++N+ N LT + QS L+ + +
Sbjct: 240 TTIYADNNLLK-TLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS-E 294
Query: 319 IPSSLFQLCGTIRFDQFSKL----KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSF 374
+P +L+ L ++ L +L+ L++SNN L+ + P L +L
Sbjct: 295 LPPNLYYL--NASSNEIRSLCDLPPSLEELNVSNNKLIELPA--------LPPRLERLIA 344
Query: 375 SNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLR 434
S +++E P +N L L + N L P ++ L +
Sbjct: 345 SFNHLAEVPELPQN------------------LKQLHVEYNPLREFPDIPE-SVEDLRMN 385
Query: 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF 494
++ + P + + V N L + P S++ L ++ +
Sbjct: 386 SH--LAEVPELPQNLKQLHVETNPLR-EFPD---IPESVEDLRMNSERVV-DPYEFAHET 438
Query: 495 TTQLITLHLKNN 506
T +L +++
Sbjct: 439 TDKLEDDVFEHH 450
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-21
Identities = 84/451 (18%), Positives = 159/451 (35%), Gaps = 87/451 (19%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
HL+SL + N+ + + LK L N + L P L +LG+S
Sbjct: 90 PPHLESLVASCNSL--TELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSN 140
Query: 94 RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP 153
L L N + L ++ + + +L + P +L + +++ P
Sbjct: 141 NQLE----KLPEL-QNSSFLKIIDVDNNSLKKL-PDLPPSL----EFIAAGNNQLE-ELP 189
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETV 213
+ + LP L +Y N L LP S L + + E+P + NL FL T+
Sbjct: 190 E-LQNLPFLTAIYADNN-SLK-KLPDLPLS--LESIVAGNNILE-ELP-ELQNLPFLTTI 242
Query: 214 DITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273
N + ++P +L + N+LT LP L +L + + L
Sbjct: 243 YA-DNNLLKTLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSE--- 294
Query: 274 SWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFD 333
P+L +N + N++ D P SLEE+++ N++ +P+
Sbjct: 295 ----LPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLI-ELPALP---------- 336
Query: 334 QFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIH 393
L+ L S N+L +L +L + EFP +
Sbjct: 337 -----PRLERLIASFNHLAEVPEL--------PQNLKQLHVEYNPLREFPDIPES----- 378
Query: 394 GRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL 453
+ DL ++++ L +N++ L + N ++ P S E
Sbjct: 379 -------------VEDLRMNSHLAEVPEL--PQNLKQLHVETNPLR-EFPDIPESVEDLR 422
Query: 454 VSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484
+++ ++ + L+ H++
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 71/393 (18%), Positives = 126/393 (32%), Gaps = 91/393 (23%)
Query: 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLG 90
L S L+ +++ N+ ++ L+ + N E+ +L LT +
Sbjct: 149 LQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEEL-----PELQNLPFLTAIY 201
Query: 91 LSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG 150
L L L + G+ L + L +T + ++
Sbjct: 202 ADNNSLKK-------LPDLPLSLESIVAGNNILEELPELQNL---PFLTTIYADNNLLK- 250
Query: 151 NFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFL 210
PD L P+L L + N +LT LP+ S L LD+S + FS + NL +L
Sbjct: 251 TLPD---LPPSLEALNVRDN-YLTD-LPELPQS--LTFLDVSENIFS-GLSELPPNLYYL 302
Query: 211 ETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQG 270
N + S+ +L E+ ++N L +LP L L N L
Sbjct: 303 NASS----NEIRSLCDLPPSL---EELNVSNNKLI-ELPALPPR---LERLIASFNHLA- 350
Query: 271 KVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTI 330
+P L P +L+++H+E N + P +
Sbjct: 351 -------EVPEL-------------------PQNLKQLHVEYNPLR-EFPDIPESVEDLR 383
Query: 331 RFDQFSKL----KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFL 386
+++ +NL+ L + N L F S+ L ++ V + F
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFPD--------IPESVEDLRMNSERVVDPYEFA 435
Query: 387 RNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419
+ L D ++ H
Sbjct: 436 HETT--------------DKLEDDVFEHHHHHH 454
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 48/288 (16%), Positives = 89/288 (30%), Gaps = 67/288 (23%)
Query: 30 TLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89
L L L ++ N + L+ L + ++ P L+ L
Sbjct: 232 ELQNLPFLTTIYADNNLL--KTLPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVS 285
Query: 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ 149
L+ L NL L+ +L +L ++ +L++S ++
Sbjct: 286 ENIFSGLSE-------LPPNLYYLNASSNEIRSLC--------DLPPSLEELNVSNNKLI 330
Query: 150 GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLF 209
P L P L L N HL E+P NL
Sbjct: 331 -ELPA---LPPRLERLIASFN-HLA------------------------EVPELPQNLKQ 361
Query: 210 LETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269
L N + P ++ L ++HL ++P L L + N L+
Sbjct: 362 LH----VEYNPLREFPDIPESVED----LRMNSHLA-EVPELPQN---LKQLHVETNPLR 409
Query: 270 GKVPSWLFTLPSLVSVNLAWNKLTGPID-GFQSPNSLEEVHLEKNQIH 316
+ P ++ L + ++ P + ++ + LE+ E + H
Sbjct: 410 -EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 3e-31
Identities = 79/387 (20%), Positives = 151/387 (39%), Gaps = 53/387 (13%)
Query: 227 STGNLSKATEILFASNHLTGQLPHHVSGL--LYLTN---LDLFGNSLQGKVPSWLFT-LP 280
+ + + +F H+ Q G + L N + ++++ K+P+ L
Sbjct: 11 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 69
Query: 281 SLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339
+ +NL ++ F ++++++++ N I +P +FQ +
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ-----------NVP 117
Query: 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKH 399
L L L N+L S I ++ P L LS SN N+ RI
Sbjct: 118 LLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLE--------------RIEDD 159
Query: 400 DSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKL 459
+ SL +L LS+N LTH+ L ++ ++ N + S L P + E S+N +
Sbjct: 160 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL--STLAIPIAVEELDASHNSI 217
Query: 460 SGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENA 519
+ + + L L L HNNL T L N+ L+ + L N LE ++ F
Sbjct: 218 N-VVRGPV--NVELTILKLQHNNL--TDTAWLLNYP-GLVEVDLSYNELEKIMYHPFVKM 271
Query: 520 SNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNR 579
++ ++ N+ +L L+V+++ +N + L+ L L N
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNS 329
Query: 580 FYGPLCKSITTFSFQALRIIDLSRNEF 606
++ + L+ + LS N++
Sbjct: 330 I-----VTLKLSTHHTLKNLTLSHNDW 351
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 66/330 (20%), Positives = 117/330 (35%), Gaps = 31/330 (9%)
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
I ++ V I L+ + F ++ + + +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGT 318
L+L ++ ++ + + +N + P FQ+ L + LE+N + +
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131
Query: 319 IPSSLFQLCG-------------TIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
+P +F I D F +LQ L LS+N L S
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL------- 184
Query: 366 LPSLLKLSFSNCNVSEFP--SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-AL 422
+PSL + S +S + + H I+ L L L +N LT L
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 244
Query: 423 HPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479
+ + +DL N+++ V E +SNN+L + Y + +LK L LS
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303
Query: 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509
HN+L + F +L L+L +NS+
Sbjct: 304 HNHLL-HVERNQPQF-DRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 67/423 (15%), Positives = 133/423 (31%), Gaps = 77/423 (18%)
Query: 28 NSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLT 87
+S L +++ E L + S L + + ++
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 88 HLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT 146
L L+ ++ I+ F + + L++G + + P N+ +T L L
Sbjct: 73 LLNLNDLQIEEIDTYAF----AYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERN 127
Query: 147 RIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIG 205
+ + P IF P L L + N L ++ +
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNN--------------NLERIE----------DDTFQ 162
Query: 206 NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFG 265
L+ + ++ N + + + + N L+ ++ + + LD
Sbjct: 163 ATTSLQNLQLSS-NRLTHVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 214
Query: 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQ 325
NS+ V + L + L N LT + L EV L N++
Sbjct: 215 NSIN-VVRGPVNV--ELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE--------- 261
Query: 326 LCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385
I + F K++ L+ L +SNN L++ G +P+L L S+ ++
Sbjct: 262 ---KIMYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHNHLLHVERN 313
Query: 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVP 445
L +L L +N + + L ++ L L +N + L
Sbjct: 314 QPQF---------------DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 358
Query: 446 PPS 448
Sbjct: 359 LFR 361
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 6e-19
Identities = 58/366 (15%), Positives = 114/366 (31%), Gaps = 72/366 (19%)
Query: 248 LPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLE 306
+ ++ ++ + + TL + V + + P S +E
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 307 EVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSL 366
++L QI I F+ +Q L + N + + ++
Sbjct: 73 LLNLNDLQIE------------EIDTYAFAYAHTIQKLYMGFNAIRYLPP----HVFQNV 116
Query: 367 PSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALH 423
P L L ++S P + L L +SNN L I
Sbjct: 117 PLLTVLVLERNDLSSLPRGI--------------FHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 424 PWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483
+++ L L +N++ L PS VS N LS + +++ L SHN++
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSI 217
Query: 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKC 543
+ + +L L L++N+L ++
Sbjct: 218 N-VVRG---PVNVELTILKLQHNNL-----------TDTAWL---------------LNY 247
Query: 544 VKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603
L V++ N + + L+ L + +NR ++ L+++DLS
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL---NLYGQPIPTLKVLDLSH 304
Query: 604 NEFKDF 609
N
Sbjct: 305 NHLLHV 310
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 4e-17
Identities = 58/303 (19%), Positives = 104/303 (34%), Gaps = 30/303 (9%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
D +Q L + FN + P F + LT L ++ L + K
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142
Query: 86 LTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
LT L +S + IE TF T L L L S L+ + + +L ++S
Sbjct: 143 LTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNRLTHVDLSLIPSL----FHANVS 194
Query: 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSI 204
+ + + + L N + + + L L L ++ + + +
Sbjct: 195 YNLLS-----TLAIPIAVEELDASHN-SIN-VVRG-PVNVELTILKLQHNNLT-DTA-WL 244
Query: 205 GNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263
N L VD++Y N + I + + + ++N L L + + L LDL
Sbjct: 245 LNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302
Query: 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSS 322
N L V L ++ L N + + +L+ + L N +
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRA 358
Query: 323 LFQ 325
LF+
Sbjct: 359 LFR 361
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 14/147 (9%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHL 83
+ D + L L ++L++N +I F +++ L L S + L +
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294
Query: 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
L L LS L + +L L+L ++ +K + L + L L
Sbjct: 295 PTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKN----LTL 346
Query: 144 SGTRIQGNFPDQIFLLPNLRVLYLCGN 170
S N L N+ +
Sbjct: 347 SHNDWDCN--SLRALFRNVARPAVDDA 371
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 68/404 (16%), Positives = 144/404 (35%), Gaps = 78/404 (19%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
++L + L +++ + L ++T L ++G ++ I L NL L L
Sbjct: 19 ADLAEGIRAVLQKASVTDVVTQEEL---ESITKLVVAGEKVAS--IQGIEYLTNLEYLNL 73
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
GN ++D S + NL+ L + I + ++
Sbjct: 74 NGN---------------------QITDIS-----PLSNLVKLTNLYIGTNKI--TDISA 105
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNL 287
NL+ E+ ++++ ++ L + +L+L N S L + L + +
Sbjct: 106 LQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTV 162
Query: 288 AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLS 347
+K+ + + L + L NQI P + L +L +
Sbjct: 163 TESKVKD-VTPIANLTDLYSLSLNYNQIEDISP--------------LASLTSLHYFTAY 207
Query: 348 NNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSL 407
N + T N + L L N +++ L
Sbjct: 208 VNQITDITPVAN------MTRLNSLKIGNNKITDLSPL----------------ANLSQL 245
Query: 408 IDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSGQIPP 465
L++ N ++ I A+ ++ L++ +N+I S+L ++NN+L +
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME 305
Query: 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509
I L++L L LS N+++ P L + +++ + N ++
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASL-SKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-30
Identities = 72/382 (18%), Positives = 133/382 (34%), Gaps = 59/382 (15%)
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNL- 261
+L + + + L T+++ A + + G+ YLTNL
Sbjct: 17 PDADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA-----SIQGIEYLTNLE 69
Query: 262 --DLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTI 319
+L GN + P L L L ++ + NK+T I Q+ +L E++L ++ I
Sbjct: 70 YLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDNISDIS 126
Query: 320 PSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNV 379
P + L + L+L N+ LS ++ ++ L L+ + V
Sbjct: 127 P--------------LANLTKMYSLNLGANHNLS-----DLSPLSNMTGLNYLTVTESKV 167
Query: 380 SEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKI 438
+ L L L+ N + I L ++ N+I
Sbjct: 168 KDVTPI----------------ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI 211
Query: 439 QGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQ 497
+ + NNK++ P + +LS L +L + N +S + + T +
Sbjct: 212 TDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLT-K 266
Query: 498 LITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557
L L++ +N + N S + S LN N+ + L + + N I
Sbjct: 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 558 DTFPCWLGSLPLLKILILRSNR 579
D P L SL + +
Sbjct: 325 DIRP--LASLSKMDSADFANQV 344
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 70/418 (16%), Positives = 133/418 (31%), Gaps = 86/418 (20%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
I+ L+ L + L+ +T L + + I +L+
Sbjct: 12 INQIFPDADLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKVASI--QGIEYLT 66
Query: 85 KLTHLGLSCRVLTIEQRTFDLLA-SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
L +L L+ +T D+ SNL KL+ L++G+ ++ I L + + +L L
Sbjct: 67 NLEYLNLNGNQIT------DISPLSNLVKLTNLYIGTNKITDISALQNL---TNLRELYL 117
Query: 144 SGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYS 203
+ I + L + L L N +L+
Sbjct: 118 NEDNISD--ISPLANLTKMYSLNLGANHNLS-------------------------DLSP 150
Query: 204 IGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263
+ N+ L + +T P NL+ + N + ++ L L
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTA 206
Query: 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSL 323
+ N + P + + L S+ + NK+T + + + L + + NQI
Sbjct: 207 YVNQITDITP--VANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQISD------ 257
Query: 324 FQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEF- 382
+ L L+ L++ +N + + N L L L +N +
Sbjct: 258 --------INAVKDLTKLKMLNVGSNQISDISVLNN------LSQLNSLFLNNNQLGNED 303
Query: 383 PSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQ 439
+ +L L LS N +T I L + + D N I+
Sbjct: 304 MEVIGG---------------LTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-25
Identities = 57/364 (15%), Positives = 122/364 (33%), Gaps = 77/364 (21%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317
L + P L + L +T + + S+ ++ + ++
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVA- 57
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
+I L NL++L+L+ N + + N L L L
Sbjct: 58 SIQG-------------IEYLTNLEYLNLNGNQITDISPLSN------LVKLTNLYIGTN 98
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNN 436
+++ + + +L +L L+ + ++ I L + +L+L N
Sbjct: 99 KITDISAL----------------QNLTNLRELYLNEDNISDISPLANLTKMYSLNLGAN 142
Query: 437 KIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496
+ +++ L YL+++ + + P + N T
Sbjct: 143 HNLS----------------------DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT- 177
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
L +L L N +E + +++ F N+ P +A +L + +GNN I
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233
Query: 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFS-FQALRIIDLSRNEFKDFLPRRNF 615
D P L +L L L + +N+ I L+++++ N+ D N
Sbjct: 234 TDLSP--LANLSQLTWLEIGTNQI-----SDINAVKDLTKLKMLNVGSNQISDISVLNNL 286
Query: 616 TSME 619
+ +
Sbjct: 287 SQLN 290
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 57/372 (15%), Positives = 115/372 (30%), Gaps = 59/372 (15%)
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLD 262
+ E + + + H + +
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIET 62
Query: 263 LFGNSLQGKVPSWL--FTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIP 320
G +L+ L T P V++ L L D + L+ + ++ + +P
Sbjct: 63 RTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELP 120
Query: 321 SSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSS-GNIDIKYSLPSLLKLSFSNCNV 379
++ Q L+ L L+ N L + +S + L L +LS C
Sbjct: 121 DTMQQF------------AGLETLTLARNPLRALPASIAS------LNRLRELSIRACPE 162
Query: 380 -SEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--ALHPWKNIRTLDLRNN 436
+E P L +++ + + +G +L L L + + ++ +N+++L +RN+
Sbjct: 163 LTELPEPLASTD------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216
Query: 437 KIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496
+ + P I L L+ L L PP G
Sbjct: 217 PLS----------------------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA- 253
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
L L LK+ S + + ++ DL LP +A+ ++ V ++
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
Query: 557 NDTFPCWLGSLP 568
+ P
Sbjct: 314 AQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 49/349 (14%), Positives = 107/349 (30%), Gaps = 55/349 (15%)
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSL 305
G HH NL G++ L + + + N+
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNAD---RNRWHSAWRQANSNNP 58
Query: 306 EEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSS-GNIDIKY 364
+ + L L+L + L F
Sbjct: 59 QIETRTGRALK-ATADLLEDA----------TQPGRVALELRSVPLPQFPDQAFR----- 102
Query: 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--AL 422
L L ++ + E P ++ + L L L+ N L + ++
Sbjct: 103 -LSHLQHMTIDAAGLMELPDTMQQ---------------FAGLETLTLARNPLRALPASI 146
Query: 423 HPWKNIRTLDLR-NNKIQ------GSILVPPPST-----EVFLVSNNKLSGQIPPYICSL 470
+R L +R ++ S + + + +P I +L
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205
Query: 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL-NC 529
+LK L + ++ LS + P + + +L L L+ + + F + ++ L +C
Sbjct: 206 QNLKSLKIRNSPLS-ALGPAIHHL-PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSN 578
+ +LP + + +LE +++ + P + LP I+++ +
Sbjct: 264 SNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 7e-21
Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 27/263 (10%)
Query: 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS 92
+L L + + RL L ++ + L P + + L L L+
Sbjct: 79 TQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLA 135
Query: 93 CRVLTIEQRTFDLLAS--NLTKLSLLHLGSTNL---------SLIKPFSLLNLSSTMTDL 141
L L AS +L +L L + + S L + + L
Sbjct: 136 RNPLRA------LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN-LQSL 188
Query: 142 DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK--CNWSSPLRELDLSLSDFSGE 199
L T I+ + P I L NL+ L + + L+ L + L ELDL
Sbjct: 189 RLEWTGIR-SLPASIANLQNLKSLKIRNS-PLSA-LGPAIHHLPK-LEELDLRGCTALRN 244
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
P G L+ + + C+ + ++P L++ ++ +LP ++ L
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Query: 260 NLDLFGNSLQGKVPSWLFTLPSL 282
+ + + P+
Sbjct: 305 IILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 63/444 (14%), Positives = 116/444 (26%), Gaps = 135/444 (30%)
Query: 54 PEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKL 113
L S +S + + + Q +N
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQ-------ANSNNP 58
Query: 114 SLLHLGSTNLSLIKPFSLLNLSST-MTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIH 172
+ L L + + L+L + FPDQ F L +L+ + +
Sbjct: 59 QIETRTGRALKAT-ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAA-G 115
Query: 173 LTGYLPK--CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGN 230
L LP ++ L L L+ + +P SI +L L + I C + +P +
Sbjct: 116 LM-ELPDTMQQFAG-LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 231 LSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWN 290
GL+ L +L L ++ +P+ + L +L S+ + +
Sbjct: 173 TD---------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216
Query: 291 KLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN 350
L+ + ++ L L+ LDL
Sbjct: 217 PLS------------------------ALGPAI------------HHLPKLEELDLRGCT 240
Query: 351 LLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
L + P F L L
Sbjct: 241 ALR-----------NYPP----IFGGR---------------------------APLKRL 258
Query: 411 DLSN-NFLTHI--ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYI 467
L + + L + +H + LDLR LS ++P I
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGC--------------------VNLS-RLPSLI 297
Query: 468 CSLSSLKYLSLSHNNLSGTIPPCL 491
L + + + +L +
Sbjct: 298 AQLPANCIILVP-PHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 48/323 (14%), Positives = 97/323 (30%), Gaps = 56/323 (17%)
Query: 304 SLEEVHLEKNQIHGTIPSSLFQL-----CGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
E ++ + + L Q R+ + N + + ++
Sbjct: 13 GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72
Query: 359 NIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418
++ + P + L + + +FP L + + L
Sbjct: 73 DLLEDATQPGRVALELRSVPLPQFPDQAFR---------------LSHLQHMTIDAAGLM 117
Query: 419 HI--ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYL 476
+ + + + TL L N ++ +P I SL+ L+ L
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR----------------------ALPASIASLNRLREL 155
Query: 477 SLSHNNLSGTIPPCLGNFT--------TQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528
S+ +P L + L +L L+ + + + N N++S +
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214
Query: 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSI 588
+ +L ++ KLE +++ +P G LK LIL+ L I
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273
Query: 589 TTFSFQALRIIDLSRNEFKDFLP 611
L +DL LP
Sbjct: 274 H--RLTQLEKLDLRGCVNLSRLP 294
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 35/152 (23%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 23 GTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISH 82
+ D + L +LQSL L + + L+ L L S L I H
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLSAL-GPAIHH 227
Query: 83 LSKLTHLGLS-CRVLTIEQRTFDLLAS--NLTKLSLLHLGSTNLSLIKPFSLLNLSSTMT 139
L KL L L C L + L L L + L P + L+ +
Sbjct: 228 LPKLEELDLRGCTALR------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LE 280
Query: 140 DLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNI 171
LDL G P I LP ++ + ++
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-26
Identities = 64/356 (17%), Positives = 115/356 (32%), Gaps = 64/356 (17%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
LDL N ++ + P L + L N ++ F + +L + L N++
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
I F+ L NL LD+S N ++ + L +L L +
Sbjct: 94 ------------LIPLGVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGD 137
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDL 433
++ IS G SL L L LT I AL + L L
Sbjct: 138 NDLVY--------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Query: 434 RNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGN 493
R+ I + + L LK L +SH T+ P
Sbjct: 184 RHLNINA-------------IRDYSFKR--------LYRLKVLEISHWPYLDTMTPNC-L 221
Query: 494 FTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553
+ L +L + + +L + + ++ +L+ N L + ++L+ + +
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 554 NMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ---ALRIIDLSRNEF 606
+ P L L++L + N+ ++ F L + L N
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQL-----TTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 9e-25
Identities = 77/381 (20%), Positives = 132/381 (34%), Gaps = 82/381 (21%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192
+ + LDL RI+ D+ P+L L L N + ++
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--------------IVSAVE-- 72
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHH 251
P + NL L T+ + N + IP LS T++ + N + L +
Sbjct: 73 --------PGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123
Query: 252 VSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHL 310
L L +L++ N L L SL + L LT P + + L + L
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370
I+ IR F +L L+ L++S+ L + + +L
Sbjct: 184 RHLNIN------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY----GLNLT 227
Query: 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKN 427
LS ++CN++ P + L L+LS N ++ I LH
Sbjct: 228 SLSITHCNLTAVPY--------------LAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273
Query: 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTI 487
++ + L ++ V G L+ L+ L++S N L+ T+
Sbjct: 274 LQEIQLVGGQLAV-------------VEPYAFRG--------LNYLRVLNVSGNQLT-TL 311
Query: 488 PPCLGNFTTQLITLHLKNNSL 508
+ + L TL L +N L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 66/298 (22%), Positives = 118/298 (39%), Gaps = 20/298 (6%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
+ HL+ L L N S + P F L L L + + + LS
Sbjct: 48 NQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 86 LTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
LT L +S +++ + F +L L L +G +L I + L+S + L L
Sbjct: 106 LTKLDISENKIVILLDYMF----QDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLE 160
Query: 145 GTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWS--SPLRELDLSLSDFSGEIP 201
+ + P + L L VL L ++ + ++ L+ L++S + +
Sbjct: 161 KCNLT-SIPTEALSHLHGLIVLRLRHL-NIN-AIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 202 YSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHVSGLLYLTN 260
+ L L ++ IT+CN ++P +L + + N ++ + LL L
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276
Query: 261 LDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
+ L G L V + F L L +N++ N+LT F S +LE + L+ N +
Sbjct: 277 IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 76/386 (19%), Positives = 117/386 (30%), Gaps = 92/386 (23%)
Query: 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLG 119
E L+ + L E + L L L+ V +E F +NL L L L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLR 88
Query: 120 STNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLP 178
S L LI LS+ +T LD+S +I D +F L NL+ L + N
Sbjct: 89 SNRLKLIPLGVFTGLSN-LTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN-------- 138
Query: 179 KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEI 237
L + + L LE + + CN SIPT +L +
Sbjct: 139 ------DLVYIS----------HRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181
Query: 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PI 296
++ + L L L++ + +L S+++ LT P
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 297 DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTS 356
+ L ++L N I TI +L LQ + L L
Sbjct: 242 LAVRHLVYLRFLNLSYNPIS------------TIEGSMLHELLRLQEIQLVGGQLAVVE- 288
Query: 357 SGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416
+F L L++S N
Sbjct: 289 --------------PYAFRGL---------------------------NYLRVLNVSGNQ 307
Query: 417 LTHI---ALHPWKNIRTLDLRNNKIQ 439
LT + H N+ TL L +N +
Sbjct: 308 LTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-22
Identities = 55/348 (15%), Positives = 125/348 (35%), Gaps = 66/348 (18%)
Query: 284 SVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQF 343
+V + +G P + L KN+I T+ D+F+ +L+
Sbjct: 15 AVLCHRKRFVAVPEGI--PTETRLLDLGKNRIK------------TLNQDEFASFPHLEE 60
Query: 344 LDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKG 403
L+L+ N + + +L +L L + + P + G
Sbjct: 61 LELNENIVSAVEP----GAFNNLFNLRTLGLRSNRLKLIPLGVF--------------TG 102
Query: 404 WKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLS 460
+L LD+S N + + N+++L++ +N + +S+ S
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-------------YISHRAFS 149
Query: 461 GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENAS 520
G L+SL+ L+L NL+ +IP + LI L L++ ++ +F+
Sbjct: 150 G--------LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200
Query: 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
++ +++ + ++ + + L +++ + + + L L+ L L N
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Query: 581 YGPLCKSITTFSFQ---ALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
+I L+ I L + + F + ++ ++
Sbjct: 261 -----STIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLN 302
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-26
Identities = 75/412 (18%), Positives = 138/412 (33%), Gaps = 35/412 (8%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHL 244
++ + + + L + V + M +P + + + + +
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN-STMRKLPAALLDSFRQVELLNLNDLQI 87
Query: 245 TGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSP 302
+ + + L + N+++ +P +F +P L + L N L+ P F +
Sbjct: 88 EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDI 362
L + + N + I FQ +LQ L LS+N L S
Sbjct: 147 PKLTTLSMSNNNLE-RIEDDTFQ-----------ATTSLQNLQLSSNRLTHVDLS----- 189
Query: 363 KYSLPSLLKLSFSNCNVSEFP--SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI 420
+PSL + S +S + + H I+ L L L +N LT
Sbjct: 190 --LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247
Query: 421 -ALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYL 476
L + + +DL N+++ V E +SNN+L + Y + +LK L
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306
Query: 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENAS--NIQSFDLNCNKFEG 534
LSHN+L + F +L L+L +NS+ T + D +CN
Sbjct: 307 DLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 364
Query: 535 SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586
V + + + C S +L+ + K
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK 416
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 67/423 (15%), Positives = 133/423 (31%), Gaps = 77/423 (18%)
Query: 28 NSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLT 87
+S L +++ E L + S L + + ++
Sbjct: 20 DSNLQYDCVFYDVHIDMQTQDVYF-GFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 88 HLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT 146
L L+ ++ I+ F + + L++G + + P N+ +T L L
Sbjct: 79 LLNLNDLQIEEIDTYAF----AYAHTIQKLYMGFNAIRYLPPHVFQNVPL-LTVLVLERN 133
Query: 147 RIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIG 205
+ + P IF P L L + N L ++ +
Sbjct: 134 DLS-SLPRGIFHNTPKLTTLSMSNN--------------NLERIE----------DDTFQ 168
Query: 206 NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFG 265
L+ + ++ N + + + + N L+ ++ + + LD
Sbjct: 169 ATTSLQNLQLSS-NRLTHVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASH 220
Query: 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQ 325
NS+ V + L + L N LT + L EV L N++
Sbjct: 221 NSIN-VVRGPVN--VELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE--------- 267
Query: 326 LCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385
I + F K++ L+ L +SNN L++ G +P+L L S+ ++
Sbjct: 268 ---KIMYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHNHLLHVERN 319
Query: 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVP 445
L +L L +N + + L ++ L L +N + L
Sbjct: 320 QPQF---------------DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 364
Query: 446 PPS 448
Sbjct: 365 LFR 367
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 4e-16
Identities = 71/421 (16%), Positives = 137/421 (32%), Gaps = 49/421 (11%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
D +Q L + FN + P F + LT L ++ L + K
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 86 LTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
LT L +S + IE TF T L L L S L+ + + +L ++S
Sbjct: 149 LTTLSMSNNNLERIEDDTF----QATTSLQNLQLSSNRLTHVDLSLIPSL----FHANVS 200
Query: 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSI 204
+ + + + L N + + L L L ++ + + +
Sbjct: 201 YNLLS-----TLAIPIAVEELDASHN-SIN-VVRGPVNVE-LTILKLQHNNLT-DTA-WL 250
Query: 205 GNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263
N L VD++Y N + I + + + ++N L L + + L LDL
Sbjct: 251 LNYPGLVEVDLSY-NELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 308
Query: 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSS 322
N L V L ++ L N + + +L+ + L N +
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRA 364
Query: 323 LFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEF 382
LF+ + D + + + + K S L
Sbjct: 365 LFR-----------NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDR---LLQYIAL 410
Query: 383 PSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI 442
S + ++ GR S D ++ + ++++T P + L+ N+++ +
Sbjct: 411 TSVVEKVQRAQGRCSATD-----TINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEV 465
Query: 443 L 443
Sbjct: 466 Q 466
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 54/337 (16%), Positives = 106/337 (31%), Gaps = 25/337 (7%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHL 83
+ D + L L ++L++N +I F +++ L L S +N + +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYIS-NNRLVALNLYGQPI 300
Query: 84 SKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142
L L LS +L +E+ +L L+L ++ +K + L + L
Sbjct: 301 PTLKVLDLSHNHLLHVERNQP-----QFDRLENLYLDHNSIVTLKLSTHHTLKN----LT 351
Query: 143 LSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPY 202
LS N L N+ + + +E D D +
Sbjct: 352 LSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQY-I 408
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLD 262
++ +++ C+ +I + T+ QL V L
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEV-NELRAEVQQ 467
Query: 263 LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSS 322
L +Q + L L + + NL +L S N + K + + +
Sbjct: 468 LTNEQIQQE--QLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET 525
Query: 323 LFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGN 359
+ R + +K K + L+ N L +
Sbjct: 526 QAR-----RTEADAKQKETEDLEQENIALEKQLDNKR 557
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 62/364 (17%), Positives = 115/364 (31%), Gaps = 55/364 (15%)
Query: 223 SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSL 282
+I N ++ + L L + LDL GN L + L L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 283 VSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQ 342
+NL+ N L +D +S ++L + L N + + +++
Sbjct: 61 ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-----------------ELLVGPSIE 102
Query: 343 FLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSK 402
L +NNN+ + S + +N ++ D
Sbjct: 103 TLHAANNNISRVSCS-------RGQGKKNIYLANNKITMLRD--------------LDEG 141
Query: 403 GWKSLIDLDLSNNFLTHIA----LHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNN 457
+ LDL N + + + L+L+ N I V + +S+N
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201
Query: 458 KLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE-GHIHDTF 516
KL+ + P S + + ++SL +N L I L L L+ N G + D F
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS-QNLEHFDLRGNGFHCGTLRDFF 258
Query: 517 ENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576
+Q+ K +C + + G D L + +++ L
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQN--EEECTVPTLGHYGAYCCED-----LPAPFADRLIALG 311
Query: 577 SNRF 580
+
Sbjct: 312 HHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 54/332 (16%), Positives = 105/332 (31%), Gaps = 68/332 (20%)
Query: 279 LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSK 337
+ + L QS +++E+ L N + I +
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS------------QISAADLAP 56
Query: 338 LKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397
L+ L+LS+N L + L +L L +N V E
Sbjct: 57 FTKLELLNLSSNVLYETLDLES------LSTLRTLDLNNNYVQELLVG------------ 98
Query: 398 KHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNN 457
S+ L +NN ++ ++ + + + L NNKI
Sbjct: 99 -------PSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT------------------ 133
Query: 458 KLSGQIPPY-ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTF 516
+ S ++YL L N + L + L L+L+ N +
Sbjct: 134 ----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Query: 517 ENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576
+ +++ DL+ NK + + +++ NN + L L+ LR
Sbjct: 190 --FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245
Query: 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608
N F+ C ++ F + R+ +++ K
Sbjct: 246 GNGFH---CGTLRDFFSKNQRVQTVAKQTVKK 274
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 57/339 (16%), Positives = 110/339 (32%), Gaps = 37/339 (10%)
Query: 52 ISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNL 110
I + S+ + S + L LS + I +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL----APF 57
Query: 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGN 170
TKL LL+L S L L ST+ LDL+ +Q ++ + P++ L+ N
Sbjct: 58 TKLELLNLSSNVLYETLDLESL---STLRTLDLNNNYVQ-----ELLVGPSIETLHAANN 109
Query: 171 IHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-- 228
+++ + + + L+ + + G ++ +D+ N + ++ +
Sbjct: 110 -NIS-RVSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELA 165
Query: 229 GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288
+ + N + + V L LDL N L + + + ++L
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222
Query: 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSN 348
NKL + +LE L N H FSK + +Q +
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-----------FSKNQRVQTVAKQT 271
Query: 349 NNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLR 387
L +G + + ++P+L C P R
Sbjct: 272 VKKL----TGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 38/262 (14%), Positives = 81/262 (30%), Gaps = 21/262 (8%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
+ L + L+ LNL+ N + + L L L+ + + E+ +
Sbjct: 50 SAADLAPFTKLELLNLSSNVL---YETLDLESLSTLRTLDLNNNYV-----QELLVGPSI 101
Query: 87 THLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT 146
L + ++ + S ++L + +++++ S + LDL
Sbjct: 102 ETLHAANNNIS------RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLN 154
Query: 147 RIQG-NFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIG 205
I NF + L L L N + + ++ L+ LDLS + + +
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQ 211
Query: 206 NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT-GQLPHHVSGLLYLTNLDLF 264
+ + + + N + I + N G L S + +
Sbjct: 212 SAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Query: 265 GNSLQGKVPSWLFTLPSLVSVN 286
T+P+L
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYG 292
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 14/163 (8%)
Query: 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522
I + + K ++ ++L L + L L N L + +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 523 QSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582
+ +L+ N L L +++ NN + + L P ++ L +N
Sbjct: 61 ELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNI-- 111
Query: 583 PLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
++ Q + I L+ N+ L + ++ +D
Sbjct: 112 ---SRVSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLD 150
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 6e-08
Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 19/179 (10%)
Query: 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN 506
++ V+++ L + S ++K L LS N LS I T+L L+L +N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68
Query: 507 SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGS 566
L D E+ S +++ DLN N + L +E ++ NN I+
Sbjct: 69 VLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSR 118
Query: 567 LPLLKILILRSNRFYGPLCKSITTFSF---QALRIIDLSRNEFKDFLPRRNFTSMEAMK 622
K + L +N+ + ++ +DL NE S + ++
Sbjct: 119 GQGKKNIYLANNKI-----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 64/435 (14%), Positives = 135/435 (31%), Gaps = 69/435 (15%)
Query: 204 IGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263
N + +T + ++ + + E+ + N L+ ++ L L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSL 323
N L L +L +L +++L N + S+E +H N I + S
Sbjct: 66 SSNVLYE-TLD-LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS-RVSCSR 118
Query: 324 FQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFP 383
Q + + L+NN + + + L +
Sbjct: 119 GQ--------------GKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVN 160
Query: 384 SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSI 442
+ +L L+L NF+ + + ++TLDL +NK+
Sbjct: 161 -------------FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA--- 204
Query: 443 LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLH 502
+ P S + + ++SL +N L I L L
Sbjct: 205 -------------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS-QNLEHFD 243
Query: 503 LKNNSLE-GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561
L+ N G + D F +Q+ + + ++ +C + + G D
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQT--VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 562 CWLGSLPLLKILILRSNRFYGPLCKSIT--TFSFQALRIIDLSRNEFKDFLPRRNFTSME 619
+ L LK G + + + R ID + +++ + + +
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT-VIDQVTLRKQ 360
Query: 620 AMKNVDEQATRLQYM 634
A ++++ L
Sbjct: 361 AKITLEQKKKALDEQ 375
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 57/477 (11%), Positives = 134/477 (28%), Gaps = 88/477 (18%)
Query: 56 FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLS 114
+ S+ + S + L LS + I + TKL
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL----APFTKLE 61
Query: 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLT 174
LL+L S L L ST+ LDL+ +Q ++ + P++ L+ N +++
Sbjct: 62 LLNLSSNVLYETLDLESL---STLRTLDLNNNYVQ-----ELLVGPSIETLHAANN-NIS 112
Query: 175 GYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKA 234
+ + + L+ + + G ++ +D+ N + ++
Sbjct: 113 -RVSCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVN--------- 160
Query: 235 TEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG 294
L L +L+L N + V + L +++L+ NKL
Sbjct: 161 ------FAELAASSDT-------LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAF 205
Query: 295 PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSF 354
FQS + + L N++ I + +NL+ DL N
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLV-LIEKA------------LRFSQNLEHFDLRGNGFHC- 251
Query: 355 TSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSN 414
++ ++ + +++ + +
Sbjct: 252 -----GTLRDFFSKNQRVQTVAKQTVK-------------KLTGQNEEECTVPTLGHYGA 293
Query: 415 NFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLK 474
+ + L + + + ++ + + + +
Sbjct: 294 YCCEDLPAPFADRLIALKRKEHALLS-------------GQGSETER-LECERENQARQR 339
Query: 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNK 531
+ T+ + ITL K +L+ + + + +
Sbjct: 340 EIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 59/343 (17%), Positives = 115/343 (33%), Gaps = 42/343 (12%)
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
Q+ N + + + + N++ LDLS N L ++
Sbjct: 6 KQNGNRYKIEKVTDSSLK------------QALASLRQSAWNVKELDLSGNPLSQISA-- 51
Query: 359 NIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418
L L+ S+ + E + +L LDL+NN++
Sbjct: 52 --ADLAPFTKLELLNLSSNVLYETLDL----------------ESLSTLRTLDLNNNYVQ 93
Query: 419 HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478
+ + P +I TL NN I + ++NNK++ S ++YL L
Sbjct: 94 ELLVGP--SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 479 SHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538
N + L + L L+L+ N + + +++ DL+ NK +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGP 208
Query: 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRI 598
+ +++ NN + L L+ LR N F+ C ++ F + R+
Sbjct: 209 EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH---CGTLRDFFSKNQRV 264
Query: 599 IDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMGHAYYDE 641
+++ K L +N A + + + D
Sbjct: 265 QTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 1e-21
Identities = 66/489 (13%), Positives = 145/489 (29%), Gaps = 59/489 (12%)
Query: 132 LNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP-LRELD 190
N + ++ + ++ N++ L L GN L+ L L+
Sbjct: 7 QNGNRY-KIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLN 64
Query: 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPH 250
LS + E + +L L T+D+ N++ + + A+N+++ ++
Sbjct: 65 LSSNVLY-ETL-DLESLSTLRTLDLNN-NYVQELL----VGPSIETLHAANNNIS-RVS- 115
Query: 251 HVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEV 308
S N+ L N + + ++L N++ + S ++LE +
Sbjct: 116 -CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
+L+ N I+ + + L+ LDLS+N L S
Sbjct: 175 NLQYNFIY-DVKGQVV-------------FAKLKTLDLSSNKLAFMGPEFQ-----SAAG 215
Query: 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL----HP 424
+ +S N + LR ++L DL N L
Sbjct: 216 VTWISLRNNKLVLIEKALRF---------------SQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 425 WKNIRTLDLRNNK-IQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483
+ ++T+ + K + G + P+ L +LK + +
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320
Query: 484 SGTIPPCLGNFT---TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL 540
G+ L + + I + + + +
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380
Query: 541 AKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIID 600
+L+ + + L++L R Y + + A+R D
Sbjct: 381 RAHAELD-GTLQQAVGQIELQHATEEQSPLQLLRAIVKR-YEEMYVEQQSVQNNAIRDWD 438
Query: 601 LSRNEFKDF 609
+ +++
Sbjct: 439 MYQHKETQL 447
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 9e-18
Identities = 51/419 (12%), Positives = 105/419 (25%), Gaps = 77/419 (18%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
S +++ L+L+ N S+IS +L LN S + ++ LS
Sbjct: 26 LASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYET--LDLESLST 81
Query: 86 LTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
L L L+ V + + LH + N+S + ++ L+
Sbjct: 82 LRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSCSRGQGK----KNIYLA 128
Query: 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSI 204
+I ++ L L N + ++
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLN--------------EIDTVN---------FAELA 165
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264
+ LE +++ Y NF+ + +K + +SN L + +T + L
Sbjct: 166 ASSDTLEHLNLQY-NFIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222
Query: 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLF 324
N L + L +L +L N + + K +
Sbjct: 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-------- 273
Query: 325 QLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNID-IKYSLPSLLKLSFSNCNVSEFP 383
+ + + I LS
Sbjct: 274 ----KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329
Query: 384 SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ 439
N + ++D + + TL+ + +
Sbjct: 330 CERENQAR---------------QREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 43/330 (13%), Positives = 98/330 (29%), Gaps = 26/330 (7%)
Query: 29 STLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTH 88
L +++L+ A NN SR+S R + + + + L + S++ +
Sbjct: 93 QELLVGPSIETLHAANNNI--SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 89 LGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTR 147
L L + T+ ++ L L+L + +K + + + LDLS +
Sbjct: 149 LDLKLNEIDTVNFAELA---ASSDTLEHLNLQYNFIYDVKGQVVF---AKLKTLDLSSNK 202
Query: 148 IQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP-LRELDLSLSDFS-GEIPYSIG 205
+ + + + L N L + K S L DL + F G +
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNN-KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259
Query: 206 NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLF 264
++TV + + + + LP L+ L +
Sbjct: 260 KNQRVQTVA---KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHA 316
Query: 265 GNSLQG----KVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTI 319
S QG ++ ++ + + + +K +
Sbjct: 317 LLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQ 375
Query: 320 PSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349
S+ + + + ++ +
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQIELQHATEE 405
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 35/352 (9%), Positives = 84/352 (23%), Gaps = 35/352 (9%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHL 83
T++ L+ LNL +N + + +L L+ S + + E
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFI--YDVKGQVV-FAKLKTLDLSSNKLAFM-GPEFQSA 213
Query: 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
+ +T + L L + ++ L L + + + +
Sbjct: 214 AGVTWISLRNNKLVLIEKAL----RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 144 SG-TRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPY 202
++ G ++ + C + + LS
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG------- 322
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLD 262
+ + N ++ EI + L+
Sbjct: 323 ----------------SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366
Query: 263 LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLE-EVHLEKNQIHGTIPS 321
+L +V + L + + L+ + K +
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQ 426
Query: 322 SLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLS 373
Q +D + L N L ++ + + +L +L
Sbjct: 427 QSVQNNAIRDWDMYQ--HKETQLAEENARLKKLNGEADLALASANATLQELV 476
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 512 IHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLK 571
IH+ +N + + + + + +L ++ +++ N ++ L L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 572 ILILRSNRFYGPLCKSITTFS-FQALRIIDLSRNEFKDF 609
+L L SN LR +DL+ N ++
Sbjct: 62 LLNLSSNVL-----YETLDLESLSTLRTLDLNNNYVQEL 95
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 8e-25
Identities = 91/497 (18%), Positives = 172/497 (34%), Gaps = 60/497 (12%)
Query: 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCR 94
LN++ N + + + L +L L S + L S +L +L LS
Sbjct: 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 95 VLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPD 154
L + L L L + S + L LS T ++ +
Sbjct: 80 KLV------KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133
Query: 155 QIFLLPNLRVLYLCGNIHLTGYLP---KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE 211
I L +VL + G + P + + L + + +F + S+ + LE
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Query: 212 TVDITY------CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLY---LTNLD 262
+I C++ SI K + + + T + L++ +
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253
Query: 263 LFGNSLQGKVPSWLF-----TLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIH 316
+ LQG++ F +L +L + + P ++ +++ + +
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT- 312
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
+ LC SK+ LD SNN L T N L L L
Sbjct: 313 ----RMVHMLC-------PSKISPFLHLDFSNNLLTD-TVFENCG---HLTELETLILQM 357
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW----KNIRTLD 432
+ E + KSL LD+S N +++ K++ +L+
Sbjct: 358 NQLKELSK------------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 433 LRNNKIQGSIL-VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCL 491
+ +N + +I PP +V + +NK+ IP + L +L+ L+++ N L ++P +
Sbjct: 406 MSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463
Query: 492 GNFTTQLITLHLKNNSL 508
+ T L + L N
Sbjct: 464 FDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 8e-25
Identities = 96/527 (18%), Positives = 177/527 (33%), Gaps = 73/527 (13%)
Query: 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHL 118
++ T LN S + L S+I LSKL L +S R+ ++ F +L L L
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK----FNQELEYLDL 76
Query: 119 GSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGN-IHLTGY 176
L I +NL LDLS + F + L+ L L + +
Sbjct: 77 SHNKLVKISCHPTVNL----KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV 132
Query: 177 LPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE 236
LP + + L L + E P + + I T
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL----------HIVFPTNKEFHFIL 182
Query: 237 ILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI 296
+ +L ++ +L F + L + + +L ++ WN I
Sbjct: 183 DVSVKTVANLEL-SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR-I 240
Query: 297 DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTS 356
++ + ++ G + F + LK L + ++ S
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDY-------SGTSLKALSIHQVVSDVFGFPQS 293
Query: 357 SGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416
I +S ++ + S + + S + LD SNN
Sbjct: 294 --YIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS----------------PFLHLDFSNNL 335
Query: 417 LTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSL 473
LT + TL L+ N+++ + E+ + SL
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLK-EL---SKIAEMTT---------------QMKSL 376
Query: 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFE 533
+ L +S N++S ++T L++L++ +N L I I+ DL+ NK +
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434
Query: 534 GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
S+P+ + K L+ +NV +N + L L+ + L +N +
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 7e-17
Identities = 69/420 (16%), Positives = 145/420 (34%), Gaps = 31/420 (7%)
Query: 223 SIPTSTGNLSKATEIL-FASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPS 281
+P +LS+ T IL + N+++ + L L L + N +Q S
Sbjct: 14 HVPK---DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE 70
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
L ++L+ NKL + L+ + L N +P F +
Sbjct: 71 LEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFD-ALPICKE----------FGNMSQ 116
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHD 400
L+FL LS +L ++ L L E + +
Sbjct: 117 LKFLGLSTTHL----EKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172
Query: 401 SKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKL 459
+ LD+S + ++ L K + + + + + L P ++N +
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
Query: 460 SGQIPPYI---CSLSSLKYLSLSHNNLSGTI----PPCLGNFTTQLITLHLKNNSLEGHI 512
+ I +++ Y S+S+ L G + G L + ++
Sbjct: 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292
Query: 513 HDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKI 572
+E SN+ + + +K ++ NN++ DT G L L+
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Query: 573 LILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632
LIL+ N+ + T ++L+ +D+S+N + + + +++ +++ + L
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 92/493 (18%), Positives = 170/493 (34%), Gaps = 49/493 (9%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP----KCNWSSPLRE 188
+LS T L++S I + I L LR+L + N + YL K N L
Sbjct: 18 DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQ-YLDISVFKFNQE--LEY 73
Query: 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST--GNLSKATEILFASNHLTG 246
LDLS + + NL L+ N ++P GN+S+ + ++ HL
Sbjct: 74 LDLSHNKLVKISCHPTVNLKHLD----LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129
Query: 247 QLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLE 306
++ L L + G + K L + +L T F S++
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187
Query: 307 EVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL-LSFTSSGNIDIKYS 365
+ ++ C N + +L+ NN+ ++ S I
Sbjct: 188 T--VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN---FLTHIAL 422
++ S SN + F R + K+L + ++ F
Sbjct: 246 HTTVWYFSISNVKLQGQLDF---------RDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 423 HPWKNIRTLDLRNNKIQGSILVPP---PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479
+ N+ + + + ++ P SNN L+ + L+ L+ L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 480 HNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHD-TFENASNIQSFDLNCNKFEGSL 536
N L + T L L + NS+ ++ S +++ N ++
Sbjct: 357 MNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 537 PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQA- 595
R L +++V+++ +N I + P + L L+ L + SN+ KS+ F
Sbjct: 416 FRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-----KSVPDGIFDRL 467
Query: 596 --LRIIDLSRNEF 606
L+ I L N +
Sbjct: 468 TSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 60/379 (15%), Positives = 121/379 (31%), Gaps = 41/379 (10%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHL 83
+ +S L+ L L L L L + + L
Sbjct: 104 ALPICKEFGNMSQLKFLGL-STTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGL 160
Query: 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNL-------SLIKPFSLLNLSS 136
L T ++ F L S T +L + + + L +
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220
Query: 137 TMTDLDLSGTRIQGNFPDQIF-LLPNLRVLYL-CGNIHLTGYLPKCNWSSPLRELD-LSL 193
+++L L+ N +I L+ + V Y N+ L G L ++ L LS+
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280
Query: 194 SDFSGEIPYSIGNLLFLETVDITY----CNFMGSIPTST-GNLSKATEILFASNHLTGQL 248
++ + ++ ++ + + +S + F++N LT +
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340
Query: 249 PHHVSGLLYLTNLDLFGNSLQ--GKVPSWLFTLPSLVSVNLAWNKLT--GPIDGFQSPNS 304
+ L L L L N L+ K+ + SL ++++ N ++ S
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 305 LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKY 364
L +++ N + TI L ++ LDL +N + S
Sbjct: 401 LLSLNMSSNILTDTIFRCL--------------PPRIKVLDLHSNKIKSIPKQ-----VV 441
Query: 365 SLPSLLKLSFSNCNVSEFP 383
L +L +L+ ++ + P
Sbjct: 442 KLEALQELNVASNQLKSVP 460
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 41/187 (21%), Positives = 76/187 (40%), Gaps = 14/187 (7%)
Query: 430 TLDLRNNKIQGSILVP---PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT 486
+D N + VP T + +S N +S I SLS L+ L +SHN +
Sbjct: 4 LVDRSKNGLIH---VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59
Query: 487 IPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS--LAKCV 544
+ + F +L L L +N L + N++ DL+ N F+ +LP
Sbjct: 60 LDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115
Query: 545 KLEVVNVGNNMINDTFPCWLGSLPLLKI-LILRSNRFYGPLCKSITTFSFQALRIIDLSR 603
+L+ + + + + + L + K+ L+L + + F+ ++L I+ +
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175
Query: 604 NEFKDFL 610
EF L
Sbjct: 176 KEFHFIL 182
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 51/265 (19%), Positives = 87/265 (32%), Gaps = 40/265 (15%)
Query: 12 LDLHGSCSWLRGTIDDNSTLFRLSHLQSLNL--AFNNFLGSRISPEFGRLKELTYLNPSF 69
S L+G +D + + L++L++ ++ G S + + N +
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309
Query: 70 SNFGGLVPSEISHLSKLTHLGLSCRVLT-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKP 128
S + S +S HL S +LT +LT+L L L L +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG----HLTELETLILQMNQLKELSK 365
Query: 129 FSLL--NLSSTMTDLDLSGTRIQGNFPDQIF-LLPNLRVLYLCGNIHLTGYLPKCNWSSP 185
+ + + S LD+S + + +L L + N LT + +C
Sbjct: 366 IAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLPPR- 422
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
++ LDL N + SIP L E+ ASN L
Sbjct: 423 IKVLDLH-------------------------SNKIKSIPKQVVKLEALQELNVASNQLK 457
Query: 246 GQLPHHV-SGLLYLTNLDLFGNSLQ 269
+P + L L + L N
Sbjct: 458 -SVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 1e-24
Identities = 76/397 (19%), Positives = 136/397 (34%), Gaps = 61/397 (15%)
Query: 177 LPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE 236
+ C ++ L++ S + +P + + T+ I N + S+P L
Sbjct: 34 MRAC-LNNGNAVLNVGESGLT-TLPDCLPAHI--TTLVI-PDNNLTSLPALPPEL---RT 85
Query: 237 ILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-P 295
+ + N LT LP GLL L+ L L + + N+LT P
Sbjct: 86 LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTSLP 137
Query: 296 IDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCG-TIRFDQFSKL----KNLQFLDLSNNN 350
P L+E+ + NQ+ ++P+ +LC +Q + L LQ L +S+N
Sbjct: 138 ----VLPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192
Query: 351 LLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
L S + L KL N ++ P+ L +L
Sbjct: 193 LASLPTL--------PSELYKLWAYNNRLTSLPALPSG------------------LKEL 226
Query: 411 DLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSL 470
+S N LT + + P ++ L + N++ S+ + P V N+L+ ++P + L
Sbjct: 227 IVSGNRLTSLPVLP-SELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHL 283
Query: 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530
SS ++L N LS T + + +
Sbjct: 284 SSETTVNLEGNPLS-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH--LAAAD 340
Query: 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSL 567
+ A + + +N D F +L L
Sbjct: 341 WLVPAREGEPAPADRWHMFGQEDN--ADAFSLFLDRL 375
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 1e-21
Identities = 60/348 (17%), Positives = 108/348 (31%), Gaps = 75/348 (21%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
L++ + L +P L + ++ + N LT P P L + + NQ+
Sbjct: 42 NAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
++P L L +L L KL
Sbjct: 95 -SLPVLP------------PGLLELSIFSNPLTHL-----------PALPSGLCKLWIFG 130
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNN 436
++ P L +L +S+N L + P + L NN
Sbjct: 131 NQLTSLPVLPPG------------------LQELSVSDNQLASLPALPS-ELCKLWAYNN 171
Query: 437 KIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496
++ S+ + P + VS+N+L+ +P S L L +N L+ ++P
Sbjct: 172 QLT-SLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALPSG--- 222
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556
L L + N L S ++ ++ N+ SLP + + L +V N +
Sbjct: 223 -LKELIVSGNRLT----SLPVLPSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQL 273
Query: 557 NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604
P L L + L N T + + +
Sbjct: 274 T-RLPESLIHLSSETTVNLEGNPL-----SERTLQALREITSAPGYSG 315
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 66/354 (18%), Positives = 115/354 (32%), Gaps = 47/354 (13%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
L++L ++ N + + L EL+ + ++ L S L L +
Sbjct: 80 PPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFG 130
Query: 94 RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP 153
LT + +L L +LS+ +L P L L ++ + P
Sbjct: 131 NQLT----SLPVLPPGLQELSVSDNQLASL----PALPSEL----CKLWAYNNQLT-SLP 177
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPK--CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE 211
L L+ L + N L LP L + L+ +P L L
Sbjct: 178 M---LPSGLQELSVSDN-QLA-SLPTLPSELYK-LWAYNNRLT----SLPALPSGLKEL- 226
Query: 212 TVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGK 271
I N + S+P L E++ + N LT LP SGL +L ++ N L +
Sbjct: 227 ---IVSGNRLTSLPVLPSEL---KELMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-R 275
Query: 272 VPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
+P L L S +VNL N L+ + + +S + +
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335
Query: 332 FDQFSKLKNLQFLDLSN-NNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS 384
L + + + + F N D L + + + F +
Sbjct: 336 LAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKA 389
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 71/300 (23%), Positives = 115/300 (38%), Gaps = 65/300 (21%)
Query: 217 YCNFMG--SIPTSTGNLSKATEILF-ASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273
C G +P + T L N++ L +L L L NS++ ++
Sbjct: 60 VCTRRGLSEVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE 115
Query: 274 SWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
F L SL ++ L N LT P F+ + L E+ L N I +IPS F
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN------ 168
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEK 391
++ +L LDL L + S G + L +L L+ CN+ + P+
Sbjct: 169 -----RVPSLMRLDLGELKKLEYISEGAFE---GLFNLKYLNLGMCNIKDMPNLTPLV-- 218
Query: 392 IHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPS 448
L +L++S N I + H +++ L + N+++
Sbjct: 219 --------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-------- 256
Query: 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508
+ N G L+SL L+L+HNNLS ++P L L+ LHL +N
Sbjct: 257 -----IERNAFDG--------LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 50/280 (17%)
Query: 76 VPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNL 134
VP I S +L L + I+ TF +L L +L LG ++ I+ + L
Sbjct: 69 VPQGIP--SNTRYLNLMENNIQMIQADTF----RHLHHLEVLQLGRNSIRQIEVGAFNGL 122
Query: 135 SSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193
+S + L+L + P F L LR L+L N P+ +
Sbjct: 123 AS-LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNN--------------PIESIP--- 163
Query: 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV 252
Y+ + L +D+ + I L + ++ +P+ +
Sbjct: 164 -------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-L 214
Query: 253 SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLE 311
+ L+ L L++ GN P L SL + + ++++ + F SL E++L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274
Query: 312 KNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351
N + ++ D F+ L+ L L L +N
Sbjct: 275 HNNLS------------SLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 57/284 (20%), Positives = 93/284 (32%), Gaps = 45/284 (15%)
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDI 362
N +V + + +P + N ++L+L NN+ + D
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGIP--------------SNTRYLNLMENNIQMIQA----DT 94
Query: 363 KYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-- 420
L L L ++ + I G SL L+L +N+LT I
Sbjct: 95 FRHLHHLEVLQLGRNSIRQ--------------IEVGAFNGLASLNTLELFDNWLTVIPS 140
Query: 421 -ALHPWKNIRTLDLRNNKI---QGSILVPPPS-TEVFLVSNNKLSGQIPPYI-CSLSSLK 474
A +R L LRNN I PS + L KL I L +LK
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLK 199
Query: 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEG 534
YL+L N+ +P L L + N +F S+++ + ++
Sbjct: 200 YLNLGMCNIK-DMPNLTP--LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 535 SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSN 578
+ L +N+ +N ++ L L L L N
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 56/250 (22%), Positives = 85/250 (34%), Gaps = 44/250 (17%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
T L HL+ L L N+ +I F L L L + + +LSK
Sbjct: 91 QADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148
Query: 86 LTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTN-LSLIKPFSLLNLSSTMTDLDL 143
L L L + +I F + + L L LG L I + L + + L+L
Sbjct: 149 LRELWLRNNPIESIPSYAF----NRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNL 203
Query: 144 SGTRIQ--GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIP 201
I+ N L L L + GN E+ P
Sbjct: 204 GMCNIKDMPNLTP----LVGLEELEMSGN--------------HFPEIR----------P 235
Query: 202 YSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV-SGLLYLT 259
S L L+ + + + + I + L+ E+ A N+L+ LPH + + L YL
Sbjct: 236 GSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLV 293
Query: 260 NLDLFGNSLQ 269
L L N
Sbjct: 294 ELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 13/162 (8%)
Query: 465 PYICS-LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523
P +CS + + + LS +P + L+L N+++ DTF + +++
Sbjct: 47 PSVCSCSNQFSKVVCTRRGLS-EVPQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLE 102
Query: 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583
L N + L + + +N + L L+ L LR+N
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI--- 159
Query: 584 LCKSITTFSFQ---ALRIIDLSRNEFKDFLPRRNFTSMEAMK 622
+SI +++F +L +DL + +++ F + +K
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 69/402 (17%), Positives = 129/402 (32%), Gaps = 65/402 (16%)
Query: 223 SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFT-LPS 281
+P + + N + S L L L + + + + F L S
Sbjct: 27 ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
L+ + L +N+ F +LE + L + + G + + F L +
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA----------VLSGNFFKPLTS 130
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS------------FLRN 388
L+ L L +NN+ + ++ L + V LR
Sbjct: 131 LEMLVLRDNNIKKIQPASFFL---NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 389 SEKIHGRISKHDSKGWK--------SLIDLDLSNNFLTHI------ALHPWKNIRTLDLR 434
S ++++ K S+ LDLS N I++L L
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 435 NNKIQGSILV---------------PPPSTEVFLVSNNKLSGQIPPYICS-LSSLKYLSL 478
N+ GS + +S +K+ + + S + L+ L+L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306
Query: 479 SHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR 538
+ N ++ I T L+ L+L N L FEN ++ DL+ N +
Sbjct: 307 AQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 539 SLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
S L+ + + N + L L+ + L +N +
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 4e-22
Identities = 71/376 (18%), Positives = 130/376 (34%), Gaps = 53/376 (14%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
+ ++ RL LQ L + G I F L L L ++ F L + L+
Sbjct: 46 NETSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104
Query: 86 LTHLGLSC---RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142
L L L+ + F LT L +L L N+ I+P S LD
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFK----PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160
Query: 143 LSGTRIQGNFPDQIFL---LPNLRVLYLCGNIHLTGYLPKCNWSSP--------LRELDL 191
L+ +++ + ++ L + +L L W + LDL
Sbjct: 161 LTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219
Query: 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTG--NLSKATEILFASNHLTGQLP 249
S + F + + + + + ++ +S G N F +G
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG--- 276
Query: 250 HHVSGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEE 307
+ DL + + + +F+ L + LA N++ + F L +
Sbjct: 277 --------VKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 308 VHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLP 367
++L +N + G+I S +F+ L L+ LDLS N++ + LP
Sbjct: 328 LNLSQNFL-GSIDSRMFE-----------NLDKLEVLDLSYNHIRALGD----QSFLGLP 371
Query: 368 SLLKLSFSNCNVSEFP 383
+L +L+ + P
Sbjct: 372 NLKELALDTNQLKSVP 387
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 1e-16
Identities = 78/435 (17%), Positives = 145/435 (33%), Gaps = 67/435 (15%)
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL--TIEQRTFDLLASNLTKLSLLHLG 119
+ Y++ S ++ L + S L L L + + I TF L+ L +L L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR----GLSSLIILKLD 87
Query: 120 STNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNF-PDQIFL-LPNLRVLYLCGNIHLTGYL 177
++ + L++ + L L+ + G F L +L +L L N ++
Sbjct: 88 YNQFLQLETGAFNGLAN-LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQ 145
Query: 178 PKCNWSS--PLRELDLS---LSDFSGEIPYSIGNL----LFLETVDITYCNFMGSIPTST 228
P + + LDL+ + E + L L ++ + N
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 229 GN---LSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSV 285
GN + T + + N + + T + S + S
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265
Query: 286 NLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345
N + L + ++ L K++I + S+F +L+ L
Sbjct: 266 NFTFKGLE--------ASGVKTCDLSKSKIF-ALLKSVFS-----------HFTDLEQLT 305
Query: 346 LSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWK 405
L+ N + + + L LLKL+ S + S + +
Sbjct: 306 LAQNEINKIDD----NAFWGLTHLLKLNLSQNFLGSIDSRM--------------FENLD 347
Query: 406 SLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQ 462
L LDLS N + + + N++ L L N+++ S+ P L S K+
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SV---PDGIFDRLTSLQKIWLH 403
Query: 463 IPPYICSLSSLKYLS 477
P+ CS + YLS
Sbjct: 404 TNPWDCSCPRIDYLS 418
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 56/335 (16%), Positives = 115/335 (34%), Gaps = 77/335 (22%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHL 83
I S + L+L FN + +
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNK---------------------------------VKSI 169
Query: 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
+ L + T+ L+ ++L + L K + +S +T LDL
Sbjct: 170 CEEDLLNFQGKHFTL---------LRLSSITLQDMNEYWLGWEKCGNPFKNTS-ITTLDL 219
Query: 144 SGTRIQGNFPDQIFLLPN---LRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEI 200
SG + + + F ++ L L + ++ N+ P L
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG--- 276
Query: 201 PYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV-SGLLYL 258
++T D++ + + ++ S + + ++ A N + ++ + GL +L
Sbjct: 277 ---------VKTCDLSK-SKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325
Query: 259 TNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
L+L N L + S +F L L ++L++N + F +L+E+ L+ NQ+
Sbjct: 326 LKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351
++P + F +L +LQ + L N
Sbjct: 385 -SVPDGI-----------FDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 44/227 (19%), Positives = 79/227 (34%), Gaps = 17/227 (7%)
Query: 411 DLSNNFLTHIALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQIPPYI 467
N L + P ++ +DL N I + + V I
Sbjct: 16 ICINRGLHQVPELPA-HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74
Query: 468 C-SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHI--HDTFENASNIQS 524
LSSL L L +N + N L L L +L+G + + F+ ++++
Sbjct: 75 FRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 525 FDLNCNKFEGSLPRSL-AKCVKLEVVNVGNNMI----NDTF----PCWLGSLPLLKILIL 575
L N + P S + V+++ N + + L L I +
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 576 RSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMK 622
N ++ K F ++ +DLS N FK+ + +R F ++ K
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 12/191 (6%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
P +S N ++ L L++L + I + LI L L
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSL--PRSLAKCVKLEVVNVGNNMINDTFP-C 562
N F +N++ L +G++ LE++ + +N I P
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 563 WLGSLPLLKILILRSNR--------FYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRN 614
+ ++ +L L N+ K T ++ + D++ + N
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL-GWEKCGN 207
Query: 615 FTSMEAMKNVD 625
++ +D
Sbjct: 208 PFKNTSITTLD 218
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 52/314 (16%), Positives = 96/314 (30%), Gaps = 59/314 (18%)
Query: 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKH 399
++ ++DLS N++ + L L L I +
Sbjct: 31 HVNYVDLSLNSIAELNETSF----SRLQDLQFLKVEQQ-------------TPGLVIRNN 73
Query: 400 DSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSIL-----VPPPSTEV 451
+G SLI L L N + A + N+ L L + G++L P S E+
Sbjct: 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133
Query: 452 FLVSNNKLSGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFT-TQLITLHLKNNSL- 508
++ +N + P ++ L L+ N + L NF L L + +L
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193
Query: 509 -------EGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK-------------CVKLEV 548
++I + DL+ N F+ S+ +
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 549 VNVGNNMINDTFPCWLGSLPL--LKILILRSNRFYGPLCKSITTFSFQ---ALRIIDLSR 603
+ G+ D L +K L ++ ++ F L + L++
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-----FALLKSVFSHFTDLEQLTLAQ 308
Query: 604 NEFKDFLPRRNFTS 617
NE + F
Sbjct: 309 NEINK-IDDNAFWG 321
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 22/170 (12%)
Query: 17 SCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELT----YLNPSFSNF 72
+ + F+ + + +L+L+ N F S F + L+ S++
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 73 GGLVPSEISHLSKLTHLGLSCRVLT-----------IEQRTFDLLASNLTKLSLLHLGST 121
+ T GL + + + F + T L L L
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS----HFTDLEQLTLAQN 309
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGN 170
++ I + L+ + L+LS + + ++F L L VL L N
Sbjct: 310 EINKIDDNAFWGLTH-LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYN 357
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 5e-22
Identities = 62/331 (18%), Positives = 105/331 (31%), Gaps = 63/331 (19%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
LDL N + L +L ++ L NK++ F LE ++L KNQ+
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
+P + K LQ L + N + + L ++ +
Sbjct: 114 -ELPEKMP--------------KTLQELRVHENEITKVRK----SVFNGLNQMIVVELGT 154
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNN 436
+ I +G K L + +++ +T I ++ L L N
Sbjct: 155 NPLKSSG------------IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 202
Query: 437 KIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496
KI V L G L++L L LS N++S + T
Sbjct: 203 KITK-------------VDAASLKG--------LNNLAKLGLSFNSIS-AVDNGSLANTP 240
Query: 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEG------SLPRSLAKCVKLEVVN 550
L LHL NN L + + IQ L+ N P K V+
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299
Query: 551 VGNNMINDTF--PCWLGSLPLLKILILRSNR 579
+ +N + P + + + L + +
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 67/316 (21%), Positives = 119/316 (37%), Gaps = 49/316 (15%)
Query: 217 YCNFMG--SIPTSTGNLSKATEIL-FASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273
C+ +G +P +L T +L +N +T L L L L N + K+
Sbjct: 37 QCSDLGLEKVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KIS 92
Query: 274 SWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
F L L + L+ N+L P ++ L+E+ + +N+I + S+F
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVF------- 141
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK--YSLPSLLKLSFSNCNVSEFPSFL-RN 388
+ L + ++L N L S I+ + L + ++ N++ P L +
Sbjct: 142 ----NGLNQMIVVELGTNPL----KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193
Query: 389 SEKIH------GRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ 439
++H ++ KG +L L LS N ++ + +L ++R L L NNK+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 440 G--SILVPPPSTEVFLVSNNKLSG------QIPPYICSLSSLKYLSLSHNNLSGT-IPPC 490
L +V + NN +S P Y +S +SL N + I P
Sbjct: 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 491 LGNFTTQLITLHLKNN 506
+ L N
Sbjct: 314 TFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 62/319 (19%), Positives = 101/319 (31%), Gaps = 44/319 (13%)
Query: 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHL 118
+ L+ + + + +L L L L ++ I F + L KL L+L
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYL 107
Query: 119 GSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYL 177
L + L +L + I +F L + V+ L N
Sbjct: 108 SKNQLKELPEKMPKTL----QELRVHENEIT-KVRKSVFNGLNQMIVVELGTN------- 155
Query: 178 PKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEI 237
PL+ + F G + L + I N +IP G TE+
Sbjct: 156 -------PLKSSGIENGAFQG--------MKKLSYIRIADTNIT-TIPQ--GLPPSLTEL 197
Query: 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID 297
N +T + GL L L L NS+ L P L ++L NKL
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 298 GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSS 357
G ++ V+L N I I S+ F G +K + + L +N + +
Sbjct: 258 GLADHKYIQVVYLHNNNIS-AIGSNDFCPPGY-----NTKKASYSGVSLFSNPVQYWEIQ 311
Query: 358 GNIDIKYSLPSLLKLSFSN 376
+ + N
Sbjct: 312 P--STFRCVYVRAAVQLGN 328
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 58/298 (19%), Positives = 101/298 (33%), Gaps = 35/298 (11%)
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
+ LDL NN + +L +L L N +S+ IS
Sbjct: 52 PDTALLDLQNNKITEIKDGDFK----NLKNLHTLILINNKISK--------------ISP 93
Query: 399 HDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKI---QGSILVPPPSTEVFLVS 455
L L LS N L + K ++ L + N+I + S+ V +
Sbjct: 94 GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153
Query: 456 NNKL-SGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIH 513
N L S I + L Y+ ++ N++ TIP G + L LHL N + +
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS-LTELHLDGNKIT-KVD 208
Query: 514 D-TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKI 572
+ + +N+ L+ N SLA L +++ NN + P L +++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQV 267
Query: 573 LILRSNRF----YGPLCKSITTFSFQALRIIDLSRNEFKDF-LPRRNFTSMEAMKNVD 625
+ L +N C + + L N + + + F + V
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 62/327 (18%), Positives = 110/327 (33%), Gaps = 67/327 (20%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192
+L LDL +I L NL L L N ++ +S
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KIS---------------KIS 92
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV 252
F+ L+ LE + ++ N + +P E+ N +T
Sbjct: 93 PGAFAP--------LVKLERLYLSK-NQLKELPEKM--PKTLQELRVHENEITKVRKSVF 141
Query: 253 SGLLYLTNLDLFGNSLQ-GKVPSWLFT-LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHL 310
+GL + ++L N L+ + + F + L + +A +T G P SL E+HL
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHL 199
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370
+ N+I + L NL L LS N++ + + + P L
Sbjct: 200 DGNKIT------------KVDAASLKGLNNLAKLGLSFNSISAVDN----GSLANTPHLR 243
Query: 371 KLSFSNCNVSEFPSFLRNSEKI------HGRISK---------HDSKGWKSLIDLDLSNN 415
+L +N + + P L + + I + IS + S + L +N
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303
Query: 416 FLTHIALHPW-----KNIRTLDLRNNK 437
+ + + P + L N K
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 8e-15
Identities = 55/334 (16%), Positives = 104/334 (31%), Gaps = 83/334 (24%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
+ L +L +L L N S+ISP +F+ L KL
Sbjct: 68 KDGDFKNLKNLHTLILINNKI--SKISPG------------AFAP-----------LVKL 102
Query: 87 THLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
L LS ++ + ++ L L + ++ ++ L+ M ++L
Sbjct: 103 ERLYLSKNQLKELPEKMP-------KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGT 154
Query: 146 TRIQ-GNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYS 203
++ + F + L + + ++T +P+ S L EL L
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADT-NIT-TIPQGLPPS-LTELHLD----------- 200
Query: 204 IGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLD 262
GN + + ++ L+ ++ + N ++ ++ +L L
Sbjct: 201 -GNKI-------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246
Query: 263 LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT-------GPIDGFQSPNSLEEVHLEKNQI 315
L N L KVP L + V L N ++ P S V L N +
Sbjct: 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Query: 316 HGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349
I+ F + + L N
Sbjct: 306 QYW----------EIQPSTFRCVYVRAAVQLGNY 329
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 2e-21
Identities = 68/401 (16%), Positives = 125/401 (31%), Gaps = 51/401 (12%)
Query: 236 EILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP 295
+ A+ + L LT+LD +S+ + L L + N +T
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITT- 78
Query: 296 IDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFT 355
+D +L + + N++ + + L L +L+ N L
Sbjct: 79 LD-LSQNTNLTYLACDSNKLT-NLD--------------VTPLTKLTYLNCDTNKLTKLD 122
Query: 356 SSGNIDIKYSLPSLLKLSFSNCNVSEFP-SFLRNSEKIH----GRISKHDSKGWKSLIDL 410
S P L L+ + ++E S ++ +I+K D L L
Sbjct: 123 VSQ-------NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175
Query: 411 DLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSL 470
D S N +T + + K + L+ N I L S+NKL+ +I + L
Sbjct: 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT-EID--VTPL 232
Query: 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530
+ L Y S N L+ + ++L TLH L + N Q
Sbjct: 233 TQLTYFDCSVNPLT-ELDVSTL---SKLTTLHCIQTDLL-----EIDLTHNTQLIYFQAE 283
Query: 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT 590
+ +L +++ I + L P L L L + +
Sbjct: 284 GCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTEL-----TELDV 335
Query: 591 FSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRL 631
L+ + +DF ++ + Q +
Sbjct: 336 SHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITM 376
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 3e-19
Identities = 71/411 (17%), Positives = 131/411 (31%), Gaps = 41/411 (9%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
N I L L T LD + I I L L L
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATL----TSLDCHNSSITD--MTGIEKLTGLTKLIC 71
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
N ++T L ++ L L + + + + L L ++ N + + S
Sbjct: 72 TSN-NIT-TLDLSQNTN-LTYLACDSNKLT-NLD--VTPLTKLTYLNCDT-NKLTKLDVS 124
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNL 287
T + A N LT ++ VS LT LD N K+ + L +++
Sbjct: 125 --QNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDC 177
Query: 288 AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQL----CGTIRFDQ--FSKLKNL 341
++NK+T +D L ++ + N I + QL C + + + + L L
Sbjct: 178 SFNKITE-LD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQL 235
Query: 342 QFLDLSNNNLLSFTSSGNIDIKY---SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
+ D S N L S + LL++ ++ + + I +
Sbjct: 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK-----IKE 290
Query: 399 HDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNK 458
D L LD +T + L + L L N ++ + + N
Sbjct: 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAH 350
Query: 459 LSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509
+ + + +L + T+P T +T+ + + L+
Sbjct: 351 IQ-DFSS-VGKIPALNNNFEAEGQTI-TMPK--ETLTNNSLTIAVSPDLLD 396
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 4e-20
Identities = 61/301 (20%), Positives = 102/301 (33%), Gaps = 62/301 (20%)
Query: 217 YCNFMG--SIPTSTGNLSKATEILF-ASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGK-V 272
CN G S+PT + + L SN L L LT L L N L K
Sbjct: 13 RCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 273 PSWLFT-LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
S SL ++L++N + F LE + + + + S+F
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL------ 123
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEK 391
L+NL +LD+S+ + + I L SL L + + E
Sbjct: 124 -----SLRNLIYLDISHTHTRVAFN----GIFNGLSSLEVLKMAGNSFQEN--------- 165
Query: 392 IHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPS 448
++L LDLS L + A + +++ L++ +N
Sbjct: 166 ----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--------- 212
Query: 449 TEVFLVSNNKLSGQIPPYICS-LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507
+ + L+SL+ L S N++ + L +F + L L+L N
Sbjct: 213 -------------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Query: 508 L 508
Sbjct: 260 F 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 58/285 (20%), Positives = 89/285 (31%), Gaps = 57/285 (20%)
Query: 302 PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNID 361
P+S + LE N++ ++ F KL L L LS+N L D
Sbjct: 27 PSSATRLELESNKLQ------------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 362 IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI- 420
SL L S V S E L LD ++ L +
Sbjct: 75 FG--TTSLKYLDLSFNGVITMSSNFLGLE---------------QLEHLDFQHSNLKQMS 117
Query: 421 ---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICS-LSSLKYL 476
+N+ LD+ + + I + LSSL+ L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTR----------------------VAFNGIFNGLSSLEVL 155
Query: 477 SLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSL 536
++ N+ P + L L L LE F + S++Q +++ N F
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 537 PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLP-LLKILILRSNRF 580
L+V++ N I + L P L L L N F
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 6e-16
Identities = 58/297 (19%), Positives = 114/297 (38%), Gaps = 32/297 (10%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWS--SPLRELD 190
+ S+ T L+L ++Q L L L L N + + L+ LD
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLP 249
LS + + + L LE +D + N S +L + + H
Sbjct: 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAF 142
Query: 250 HHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLE 306
+ + +GL L L + GNS Q +FT L +L ++L+ +L F S +SL+
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 307 EVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSL 366
+++ N ++ + L +LQ LD S N++++ SL
Sbjct: 203 VLNMSHNNFF------------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250
Query: 367 PSLLKLSFS----NCNVSEFPSFLRNSEKIHGRISK------HDSKGWKSLIDLDLS 413
+ L L+ + C F ++++ ++ + + D +G ++ L+++
Sbjct: 251 -AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG-MPVLSLNIT 305
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 60/291 (20%), Positives = 95/291 (32%), Gaps = 66/291 (22%)
Query: 35 SHLQSLNLAFNNFLGSRISP-EFGRLKELTYLNPSFSN--FGGLVPSEISHLSKLTHLGL 91
S L L N + F +L +LT L+ S + F G + L +L L
Sbjct: 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 92 SCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
S + F L +L L +NL + FS+ + LD+S T +
Sbjct: 86 SFNGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 140
Query: 152 FPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSP-LRELDLSLSDFSGEIPYSIGNLLF 209
+ IF L +L VL + GN +LP L LDLS
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS----------------- 183
Query: 210 LETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSL 268
L QL + L L L++ N+
Sbjct: 184 -------------------------------QCQLE-QLSPTAFNSLSSLQVLNMSHNNF 211
Query: 269 QGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQS-PNSLEEVHLEKNQIH 316
+ ++ + L SL ++ + N + Q P+SL ++L +N
Sbjct: 212 F-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 18/224 (8%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
+ +L+ L L+L+ N + L YL+ SF+ + S L +
Sbjct: 44 PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQ 102
Query: 86 LTHLGLS-CRVLTI-EQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
L HL + + E F +L L L + T+ + LSS + L +
Sbjct: 103 LEHLDFQHSNLKQMSEFSVF----LSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKM 157
Query: 144 SGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKC---NWSSPLRELDLSLSDFSGE 199
+G Q NF IF L NL L L L L + SS L+ L++S ++F
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQC-QLE-QLSPTAFNSLSS-LQVLNMSHNNFFSL 214
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASN 242
+ L L+ +D + N + + + + L +
Sbjct: 215 DTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQ 257
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 13/152 (8%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-S 81
+ + S L +L L+++ + F L L L + ++F +I +
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172
Query: 82 HLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140
L LT L LS C++ + F+ +L+ L +L++ N + F L+S +
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNNFFSLDTFPYKCLNS-LQV 227
Query: 141 LDLSGTRIQGNFPDQIF--LLPNLRVLYLCGN 170
LD S I Q +L L L N
Sbjct: 228 LDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 16/170 (9%)
Query: 455 SNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGH--I 512
++ L+ +P I SS L L N L T QL L L +N L
Sbjct: 15 NSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCC 70
Query: 513 HDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC-WLGSLPLLK 571
+ ++++ DL+ N ++ + +LE ++ ++ + SL L
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 572 ILILRSNRFYGPLCKSITTFSFQ---ALRIIDLSRNEFKDFLPRRNFTSM 618
L + + F +L ++ ++ N F++ FT +
Sbjct: 130 YLDISHTHT-----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 8e-20
Identities = 57/332 (17%), Positives = 96/332 (28%), Gaps = 66/332 (19%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
T LDL N + L L ++ L NK++ F L+++++ KN +
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
IP +L +L L + +N + + L ++ +
Sbjct: 116 -EIPPNLP--------------SSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGG 156
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNN 436
+ G L L +S LT I + + L L +N
Sbjct: 157 NPLENSG------------FEPGAFDG-LKLNYLRISEAKLTGIPKDLPETLNELHLDHN 203
Query: 437 KIQGSILVPPPSTEVFLVSNNKLSGQIPPYICS-LSSLKYLSLSHNNLSGTIPPCLGNFT 495
KIQ I S L L L HN + I +F
Sbjct: 204 KIQ----------------------AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFL 240
Query: 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEG------SLPRSLAKCVKLEVV 549
L LHL NN L + + +Q L+ N K +
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299
Query: 550 NVGNNMINDTF--PCWLGSLPLLKILILRSNR 579
++ NN + P + + + +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 65/319 (20%), Positives = 106/319 (33%), Gaps = 45/319 (14%)
Query: 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHL 118
+ T L+ ++ L + L L L L ++ I ++ F S L KL L++
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF----SPLRKLQKLYI 109
Query: 119 GSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYL 177
+L I P +L +L + RI+ P +F L N+ + + GN
Sbjct: 110 SKNHLVEIPPNLPSSL----VELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGN------- 157
Query: 178 PKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEI 237
PL F G L L + I+ + IP E+
Sbjct: 158 -------PLENSGFEPGAFDG---------LKLNYLRISE-AKLTGIPK--DLPETLNEL 198
Query: 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID 297
N + + L L L N ++ L LP+L ++L NKL+
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 298 GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSS 357
G L+ V+L N I + + F G K + L NN + +
Sbjct: 259 GLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGF-----GVKRAYYNGISLFNNPVPYWEVQ 312
Query: 358 GNIDIKYSLPSLLKLSFSN 376
+ L + F N
Sbjct: 313 P--ATFRCVTDRLAIQFGN 329
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 59/333 (17%), Positives = 95/333 (28%), Gaps = 82/333 (24%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
L HL +L L N S+I + +FS L KL
Sbjct: 70 RKDDFKGLQHLYALVLVNNKI--SKIHEK------------AFSP-----------LRKL 104
Query: 87 THLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
L +S ++ I + L L + + + L + M +++ G
Sbjct: 105 QKLYISKNHLVEIPPNLP-------SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGG 156
Query: 146 TRIQ-GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSI 204
++ F F L L + LT +PK + L EL L
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEA-KLT-GIPKDLPET-LNELHLDH----------- 202
Query: 205 GNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263
N + +I SK + N + +S L L L L
Sbjct: 203 --------------NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLT-------GPIDGFQSPNSLEEVHLEKNQIH 316
N L +VP+ L L L V L N +T P+ + L N +
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349
++ F + + + N
Sbjct: 308 ----------YWEVQPATFRCVTDRLAIQFGNY 330
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 89.9 bits (223), Expect = 5e-19
Identities = 84/494 (17%), Positives = 168/494 (34%), Gaps = 60/494 (12%)
Query: 35 SHLQSLNLAFNNFLGSRISP-EFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
++L+L+ N+ S + + L EL L S + L L +L +S
Sbjct: 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109
Query: 94 RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP 153
L ++ + L L L + ++ + +T L LS + +
Sbjct: 110 NRLQ------NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSD---FSGEIPYSIGNLLFL 210
+ L +L + H+ G + L L FS ++ S+ L L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 211 ETVDITY----CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLY---LTNLDL 263
+ +I C + + + + T + + + + L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 264 FGNSLQGKVPSWLFT-----LPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHG 317
+ ++ ++ FT L SL+ ++ + + + L +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP- 342
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
+ +C + FL+ + N + +L L L
Sbjct: 343 ----FIHMVC-------PPSPSSFTFLNFTQNVFTD-SVFQGCS---TLKRLQTLILQRN 387
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA---LHPW-KNIRTLDL 433
L+N K+ SL LD+S N L A W ++I L+L
Sbjct: 388 G-------LKNFFKVALMTKN-----MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 434 RNNKIQGSILVP-PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG 492
+N + GS+ PP +V + NN++ IP + L +L+ L+++ N L ++P +
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF 493
Query: 493 NFTTQLITLHLKNN 506
+ T L + L +N
Sbjct: 494 DRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 4e-17
Identities = 95/508 (18%), Positives = 168/508 (33%), Gaps = 80/508 (15%)
Query: 33 RLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGL 91
LS L+ L L+ N + F ++L YL+ S + + ++ L HL L
Sbjct: 74 FLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDL 128
Query: 92 SCRVLTI--EQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ 149
S + + F NLTKL+ L L + + + +L + LDL I+
Sbjct: 129 SFNDFDVLPVCKEFG----NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184
Query: 150 GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLF 209
G + + + N VL+L + + + + L L LS + E + L
Sbjct: 185 GGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243
Query: 210 LETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269
T T N +T S F + L + NL + +
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE---------YLNIYNLTITERIDR 294
Query: 270 GKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLFQLCG 328
+ L SL+ ++ + + + L + + +C
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-----FIHMVC- 348
Query: 329 TIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRN 388
+ FL+ + N + +L L L L+N
Sbjct: 349 ------PPSPSSFTFLNFTQNVFTD-SVFQGCS---TLKRLQTLILQRNG-------LKN 391
Query: 389 SEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA---LHPW-KNIRTLDLRNNKIQGSILV 444
K+ SL LD+S N L A W ++I L+L +N + GS
Sbjct: 392 FFKVALMTKN-----MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS--- 443
Query: 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504
VF C +K L L +N + +IP + + L L++
Sbjct: 444 ------VF--------------RCLPPKVKVLDLHNNRIM-SIPKDVTHLQ-ALQELNVA 481
Query: 505 NNSLEGHIHDTFENASNIQSFDLNCNKF 532
+N L+ F+ +++Q L+ N +
Sbjct: 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 97/494 (19%), Positives = 161/494 (32%), Gaps = 53/494 (10%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP----KCNWSSPLRE 188
+L L LS I I L LRVL L N + L N L
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIR-SLDFHVFLFNQD--LEY 104
Query: 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST--GNLSKATEILFASNHLT- 245
LD+S + I + L +D+ N +P GNL+K T + ++
Sbjct: 105 LDVSHNRLQ-NIS--CCPMASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSL 305
L L LDL ++G L + V + + S N+L
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNAL 220
Query: 306 EEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
+ L +++ L + + L N+ + S +
Sbjct: 221 GHLQLSNIKLNDENCQRL--MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP- 277
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW 425
+ L+ N ++E + KSL+ + N +
Sbjct: 278 ---VEYLNIYNLTITERIDR---------EEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 426 K---NIRTLDLRNNKIQGSILVPPP----STEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478
+ L + I + P S + N + + +L L+ L L
Sbjct: 326 SVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 479 SHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDT-FENASNIQSFDLNCNKFEGS 535
N L + L TL + NSL H +D A +I +L+ N GS
Sbjct: 385 QRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 536 LPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ- 594
+ R L K++V+++ NN I + P + L L+ L + SN+ KS+ F
Sbjct: 444 VFRCLPP--KVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQL-----KSVPDGVFDR 495
Query: 595 --ALRIIDLSRNEF 606
+L+ I L N +
Sbjct: 496 LTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 7e-12
Identities = 60/406 (14%), Positives = 120/406 (29%), Gaps = 49/406 (12%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
L L NS+ + L L + L+ N++ F LE + + N++
Sbjct: 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
I + +L+ LDLS N+ +L L L S
Sbjct: 114 -NIS--------------CCPMASLRHLDLSFNDFDVLPVCKEFG---NLTKLTFLGLSA 155
Query: 377 CNVSEFP-SFLRNSEKIHGRISKHDSKGWKSLID-LDLSNNFLTHIALHPWKNIR----- 429
+ + + + + L + N + H+ HP
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 430 ------TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICS-------------L 470
L L N K+ + L L +I +
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 471 SSLKYLSLSHNNLSGTIPPCLGNFTT----QLITLHLKNNSLEGHIHDTFENASNIQSFD 526
++YL++ + ++ I ++ L+ H+KN + + +
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 527 LNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586
L+ + +N N+ D+ +L L+ LIL+ N
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 587 SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632
++ T + +L +D+S N R E++ ++ + L
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 44/342 (12%), Positives = 104/342 (30%), Gaps = 28/342 (8%)
Query: 19 SWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPS 78
++ +T +L S + +L + + + +
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS- 243
Query: 79 EISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138
E++ L ++ L T + + L++ + ++ S T
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303
Query: 139 TD----LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKC-NWSSPLRELDLSL 193
+ + + + + L + C S L+ +
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS-DTPFIHMVCPPSPSSFTFLNFTQ 362
Query: 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVS 253
+ F+ + L L+T+ + N + + + + L L H
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLIL-QRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAY 420
Query: 254 GLLY-----LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEV 308
+ L+L N L G V L P + ++L N++ +L+E+
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQEL 478
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN 350
++ NQ+ ++P +F +L +LQ++ L +N
Sbjct: 479 NVASNQLK-SVPDGVFD-----------RLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 56/291 (19%), Positives = 96/291 (32%), Gaps = 45/291 (15%)
Query: 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS--FLRNSEKIHGRIS 397
+ L LS N++ +I L L L S+ + FL N
Sbjct: 53 RTKALSLSQNSISEL-RMPDIS---FLSELRVLRLSHNRIRSLDFHVFLFN--------- 99
Query: 398 KHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL---- 453
+ L LD+S+N L +I+ P ++R LDL N + P + F
Sbjct: 100 -------QDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFD-VL----PVCKEFGNLTK 147
Query: 454 -----VSNNKLSGQIPPYICSLS-SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507
+S K + L S L L ++ G L T ++ L NS
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 508 LEGHIHDTFENAS---NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL 564
L + NA + + LN + + ++NV I T+ C +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 565 GSLPLLKI-----LILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFL 610
L + + + + T+S AL+ + + + + FL
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 3e-18
Identities = 66/295 (22%), Positives = 110/295 (37%), Gaps = 82/295 (27%)
Query: 219 NFMGSIPTST-GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277
N + I ++ +L + + NH+ +GL L L+LF N L
Sbjct: 74 NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-------- 125
Query: 278 TLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSK 337
T+P+ F + L+E+ L N I +IPS F++
Sbjct: 126 TIPN---------------GAFVYLSKLKELWLRNNPIE-SIPSYA-----------FNR 158
Query: 338 LKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397
+ +L+ LDL LS+ S G + L +L L+ + CN+ E P+
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFE---GLSNLRYLNLAMCNLREIPNLTPLI-------- 207
Query: 398 KHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLV 454
L +LDLS N L+ I + +++ L + ++IQ
Sbjct: 208 --------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ--------------- 244
Query: 455 SNNKLSGQIPPY-ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508
I +L SL ++L+HNNL+ +P L L +HL +N
Sbjct: 245 -------VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 5e-18
Identities = 64/307 (20%), Positives = 109/307 (35%), Gaps = 66/307 (21%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
+ + +L+ +VP + + +NL N++ ++ F+ LE + L +N I
Sbjct: 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
TI F+ L NL L+L +N L + + L L +L N
Sbjct: 102 ------------TIEIGAFNGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRN 145
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS-NNFLTHI---ALHPWKNIRTLD 432
+ PS+ SL LDL L++I A N+R L+
Sbjct: 146 NPIESIPSYA--------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191
Query: 433 LRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG 492
L + E+ P + L L L LS N+LS I P G
Sbjct: 192 LAMCNL----------REI-------------PNLTPLIKLDELDLSGNHLS-AIRP--G 225
Query: 493 NFT--TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550
+F L L + + ++ + F+N ++ +L N LE ++
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
Query: 551 VGNNMIN 557
+ +N N
Sbjct: 286 LHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 5e-15
Identities = 65/241 (26%), Positives = 99/241 (41%), Gaps = 18/241 (7%)
Query: 35 SHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS- 92
++ + LNL N I F L+ L L S ++ + + L+ L L L
Sbjct: 64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 93 CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT-RIQGN 151
R+ TI F L+KL L L + + I ++ + S + LDL R+
Sbjct: 122 NRLTTIPNGAF----VYLSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRLS-Y 175
Query: 152 FPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFL 210
+ F L NLR L L +L +P L ELDLS + S P S L+ L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMC-NLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 211 ETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSL 268
+ + + + + I + NL EI A N+LT LPH + + L +L + L N
Sbjct: 234 QKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
Query: 269 Q 269
Sbjct: 292 N 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 59/311 (18%), Positives = 102/311 (32%), Gaps = 89/311 (28%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP-LRELDL 191
+S+ L+L +IQ + L +L +L L N H+ L L+L
Sbjct: 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLEL 119
Query: 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHH 251
N LT
Sbjct: 120 F------------------------------------------------DNRLTTIPNGA 131
Query: 252 VSGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLA-WNKLTG-PIDGFQSPNSLEEV 308
L L L L N ++ +PS+ F +PSL ++L +L+ F+ ++L +
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
+L + IP+ + L L LDLS N+ LS G+ L
Sbjct: 191 NLAMCNLR-EIPN-------------LTPLIKLDELDLSGNH-LSAIRPGSFQ---GLMH 232
Query: 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPW 425
L KL + I ++ +SL++++L++N LT + P
Sbjct: 233 LQKLWMIQSQIQV--------------IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 426 KNIRTLDLRNN 436
++ + L +N
Sbjct: 279 HHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 38/148 (25%), Positives = 54/148 (36%), Gaps = 14/148 (9%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-SHLS 84
N LS L+ L L N I F R+ L L+ + LS
Sbjct: 128 PNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 85 KLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
L +L L+ C + I + L KL L L +LS I+P S L + L +
Sbjct: 186 NLRYLNLAMCNLREIP--NL----TPLIKLDELDLSGNHLSAIRPGSFQGLMH-LQKLWM 238
Query: 144 SGTRIQGNFPDQIFL-LPNLRVLYLCGN 170
++IQ F L +L + L N
Sbjct: 239 IQSQIQ-VIERNAFDNLQSLVEINLAHN 265
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86
LS+L+ LNLA N I P L +L L+ S ++ + P L L
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNL--REI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233
Query: 87 THLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
L + ++ IE+ F NL L ++L NL+L+ L + + L
Sbjct: 234 QKLWMIQSQIQVIERNAF----DNLQSLVEINLAHNNLTLLPHDLFTPLHH-LERIHLHH 288
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 5e-18
Identities = 53/313 (16%), Positives = 100/313 (31%), Gaps = 52/313 (16%)
Query: 283 VSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNL 341
+S N +N ++G D F + + E+ L S L + +
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGEN-RNEAVSLLKE----------CLINQF 61
Query: 342 QFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDS 401
L L+ NL S + P + L + + P +
Sbjct: 62 SELQLNRLNLSSLPDNL-------PPQITVLEITQNALISLPELPAS------------- 101
Query: 402 KGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSG 461
L LD +N L+ + P +++ LD+ NN++ + P E NN+L+
Sbjct: 102 -----LEYLDACDNRLSTLPELP-ASLKHLDVDNNQLT-MLPELPALLEYINADNNQLT- 153
Query: 462 QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG---HIHDTFEN 518
+P +SL+ LS+ +N L+ +P + L L + N LE +
Sbjct: 154 MLPE---LPTSLEVLSVRNNQLT-FLPELPES----LEALDVSTNLLESLPAVPVRNHHS 205
Query: 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSN 578
F N+ +P ++ + + +N ++ L
Sbjct: 206 EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264
Query: 579 RFYGPLCKSITTF 591
F + T
Sbjct: 265 YFSMSDGQQNTLH 277
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 8e-17
Identities = 53/305 (17%), Positives = 95/305 (31%), Gaps = 45/305 (14%)
Query: 223 SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWL--FTLP 280
SI N ++ F N ++G + S L G + + + S L +
Sbjct: 2 SIMLPINNNFSLSQNSF-YNTISGTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLIN 59
Query: 281 SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
+ L L+ D P + + + +N + ++P +
Sbjct: 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLPELP---------------AS 101
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS--- 397
L++LD +N L + SL L N ++ P E I+
Sbjct: 102 LEYLDACDNRLSTLPEL--------PASLKHLDVDNNQLTMLPELPALLEYIN--ADNNQ 151
Query: 398 -KHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQ------GSILVPPPSTE 450
+ SL L + NN LT + P +++ LD+ N ++ +
Sbjct: 152 LTMLPELPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLESLPAVPVRNHHSEETEI 210
Query: 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG 510
F N+++ IP I SL + L N LS + + T H
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSM 268
Query: 511 HIHDT 515
Sbjct: 269 SDGQQ 273
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 9e-12
Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 37/323 (11%)
Query: 34 LSHLQSLNLAFNNFLG--SRISPE-FGRLKELTYLNPSFSNFGGLVPS-EISHLSKLTHL 89
L + +L+ N+F S + F + N V + +++ + L
Sbjct: 5 LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64
Query: 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ 149
L+ L+ L + ++++L + L SL L +++ LD R+
Sbjct: 65 QLNRLNLS------SLPDNLPPQITVLEITQNALI-----SLPELPASLEYLDACDNRLS 113
Query: 150 GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLF 209
P+ L +L+ L + N LT LP+ L ++ + + +P +L
Sbjct: 114 -TLPE---LPASLKHLDVDNN-QLT-MLPELPAL--LEYINADNNQLT-MLPELPTSLEV 164
Query: 210 LETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTN----LDLFG 265
L N + +P +L + ++N L LP +
Sbjct: 165 LSV----RNNQLTFLPELPESL---EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRE 216
Query: 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQ 325
N + +P + +L ++ L N L+ I S + + +
Sbjct: 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275
Query: 326 LCGTIRFDQFSKLKNLQFLDLSN 348
L + + + D+S
Sbjct: 276 LHRPLADAVTAWFPENKQSDVSQ 298
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 5e-09
Identities = 44/258 (17%), Positives = 74/258 (28%), Gaps = 26/258 (10%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL------- 86
+ L+ L+ N S + LK L N + P + L +
Sbjct: 99 PASLEYLDACDNRL--STLPELPASLKHLDVDNNQLTML----PELPALLEYINADNNQL 152
Query: 87 THLGLSC---RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLI--KPFSLLNLSSTMTDL 141
T L VL++ L L L + + L + P + T
Sbjct: 153 TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFF 212
Query: 142 DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIP 201
RI + P+ I L + L N L+ + + S + D +
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDN-PLSS-RIRESLSQQTAQPDYHGPRIYFSMS 269
Query: 202 YSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNL 261
N L D F + + + A E +N + +S + N
Sbjct: 270 DGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFS-AFLDRLSDTVSARNT 328
Query: 262 DLFGNSLQGKVPSWLFTL 279
F +V +WL L
Sbjct: 329 SGFRE----QVAAWLEKL 342
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 5e-18
Identities = 63/373 (16%), Positives = 119/373 (31%), Gaps = 83/373 (22%)
Query: 218 CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277
CNF P + + L + + + +L F + ++ L
Sbjct: 15 CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRL- 73
Query: 278 TLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSK 337
++ + + L G + + L+E+ LE ++ GT P L +
Sbjct: 74 ---TVRAARIPSRILFGALR-VLGISGLQELTLENLEVTGTAPPPLLEA----------T 119
Query: 338 LKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397
+L L+L N + + + ++ P L LS + + F
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ----------- 168
Query: 398 KHDSKGWKSLIDLDLSNNFLT-------HIALHPWKNIRTLDLRNNKIQGSILVPPPSTE 450
+ + +L LDLS+N + + ++ L LRN +
Sbjct: 169 ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------------ 213
Query: 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG 510
SG + L+ L LSHN+L ++ +QL +L+L L+
Sbjct: 214 ------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266
Query: 511 HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570
+P+ L KL V+++ N ++ LP +
Sbjct: 267 ------------------------QVPKGLPA--KLSVLDLSYNRLDRNPSPD--ELPQV 298
Query: 571 KILILRSNRFYGP 583
L L+ N F
Sbjct: 299 GNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 5e-12
Identities = 54/316 (17%), Positives = 87/316 (27%), Gaps = 62/316 (19%)
Query: 321 SSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS 380
SS F G + + ++L++L + +I SL +L+ +
Sbjct: 25 SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDI---IKSLSLKRLTVRAARIP 81
Query: 381 E--FPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHP-----WKNIRTLDL 433
LR G L +L L N +T A P ++ L+L
Sbjct: 82 SRILFGALRVL-------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 434 RNNKIQGSILVPP-------PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT 486
RN P +V ++ + +L L LS N G
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188
Query: 487 IP----PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542
C F L L L+N + G A
Sbjct: 189 RGLISALCPLKFP-TLQVLALRNAGM---------------------ETPSGVCSALAAA 226
Query: 543 CVKLEVVNVGNNMINDTFPCWLGSLP-LLKILILRSNRFYGPLCKSITTFSFQALRIIDL 601
V+L+ +++ +N + D P L L L K + L ++DL
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-----KQVPKGLPAKLSVLDL 281
Query: 602 SRNEFKDFLPRRNFTS 617
S N
Sbjct: 282 SYNRLDRNPSPDELPQ 297
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 6e-12
Identities = 45/279 (16%), Positives = 83/279 (29%), Gaps = 23/279 (8%)
Query: 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLG 90
L +L + + LK LT + + +S L L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 91 LSCRVLT--IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRI 148
L +T + +L L+L ++ L + L ++
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 149 QGNFPDQIFLLPNLRVLYLCGN-----IHLTGYLPKCNWSSPLRELDLS---LSDFSGEI 200
+Q+ + P L L L N L L + + L+ L L + SG
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT-LQVLALRNAGMETPSGVC 220
Query: 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASN----HLTGQLPHHVSGLL 256
+ L+ +D+++ + + + + L S + LP
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK----- 275
Query: 257 YLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP 295
L+ LDL N L LP + +++L N
Sbjct: 276 -LSVLDLSYNRLDRNPSPD--ELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 63.8 bits (155), Expect = 4e-11
Identities = 56/321 (17%), Positives = 92/321 (28%), Gaps = 45/321 (14%)
Query: 41 NLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQ 100
+ AFN + + G L + ++I L L + +
Sbjct: 25 SSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRI 84
Query: 101 RTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST-MTDLDLSGTRIQGNFPD----Q 155
L ++ L L L + ++ P LL + + L+L Q
Sbjct: 85 LFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144
Query: 156 IFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDI 215
+L P L+VL + L + L LDLS + GE
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL------------- 191
Query: 216 TYCNFMGSIPTSTGNLSKATEILFASNHLT---GQLPHHVSGLLYLTNLDLFGNSLQGKV 272
+ + + G + + L LDL NSL+
Sbjct: 192 -------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244
Query: 273 PSWLFTLP-SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
+ P L S+NL++ L G P L + L N++ R
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKG--LPAKLSVLDLSYNRLD--------------R 288
Query: 332 FDQFSKLKNLQFLDLSNNNLL 352
+L + L L N L
Sbjct: 289 NPSPDELPQVGNLSLKGNPFL 309
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 35/211 (16%), Positives = 75/211 (35%), Gaps = 13/211 (6%)
Query: 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPY---ICSLSSLKYLSLSHNNLS 484
++ +D + Q + ++ S + V ++ +I + +S L+ L+L + ++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 485 GTIPPCLGNFT-TQLITLHLKNNSLEGHIHDTFE----NASNIQSFDLNCNKFEGSLPRS 539
GT PP L T L L+L+N S E ++ +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 540 LAKCVKLEVVNVGNNMINDTFPCW----LGSLPLLKILILRSNRFYG-PLCKSITTFSFQ 594
+ L +++ +N P L++L LR+ S +
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228
Query: 595 ALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
L+ +DLS N +D + + +++
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 56/302 (18%), Positives = 103/302 (34%), Gaps = 52/302 (17%)
Query: 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLG 119
+ L+ S + + S++ L L L+ + TIE+ +F +L L L L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLS 108
Query: 120 STNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIF-LLPNLRVLYLCGNIHLTGYLP 178
LS + LSS +T L+L G + +F L L++L + T
Sbjct: 109 YNYLSNLSSSWFKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT---- 163
Query: 179 KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEI 237
+ DF+G L FLE ++I + S + ++ + +
Sbjct: 164 -----------KIQRKDFAG--------LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHL 203
Query: 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGN--------SLQGKVPSWLFTLPSLVSVNLAW 289
+ L V + L+L L + L + +V +
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263
Query: 290 NKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349
L + + L E+ +NQ+ ++P +F +L +LQ + L N
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFD-----------RLTSLQKIWLHTN 311
Query: 350 NL 351
Sbjct: 312 PW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 7e-17
Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 45/290 (15%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
+ +LDL N + S L +L ++ L N + D F S SLE + L N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
+ SS F+ L +L FL+L N + + L L L
Sbjct: 114 -NLSSSWFK-----------PLSSLTFLNLLGNPYKTLGETSLFS---HLTKLQIL---- 154
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDL 433
+ N + +I + D G L +L++ + L +L +N+ L L
Sbjct: 155 --------RVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205
Query: 434 RNNKIQ----GSILVPPPSTEVFLVSN-------NKLSGQIPPYICSLSSLKYLSLSHNN 482
+ + V + L ++LS + + + + ++ +
Sbjct: 206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265
Query: 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKF 532
L + L + L+ L N L+ F+ +++Q L+ N +
Sbjct: 266 LF-QVMKLLNQ-ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 53/293 (18%), Positives = 104/293 (35%), Gaps = 56/293 (19%)
Query: 223 SIPTSTGNLSKATEILF-ASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-L 279
SIP+ L++A + L ++N +T + + + L L L N + + F+ L
Sbjct: 45 SIPS---GLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSL 99
Query: 280 PSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGT--------- 329
SL ++L++N L+ F+ +SL ++L N +SLF
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159
Query: 330 -----IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS 384
I+ F+ L L+ L++ ++L S+ ++ S+ ++ L
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLK---SIQNVSHLILHMKQHILLLE 215
Query: 385 FLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-----------ALHPWKNIRTLDL 433
+ S+ L+L + L +L R + +
Sbjct: 216 IFVDVTS--------------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 434 RNNKIQG--SILVPPPSTEVFLVSNNKLSGQIPPYIC-SLSSLKYLSLSHNNL 483
+ + +L S N+L +P I L+SL+ + L N
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 54/291 (18%), Positives = 95/291 (32%), Gaps = 53/291 (18%)
Query: 28 NSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNP-SFSNFGGLVPSEISHLSKL 86
NS L R +LQ+L L N + + SFS+ L L
Sbjct: 69 NSDLQRCVNLQALVLTSNG---------------INTIEEDSFSS-----------LGSL 102
Query: 87 THLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
HL LS + + F L+ L+ L+L + SL + + + L +
Sbjct: 103 EHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
Query: 146 TRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKC-NWSSPLRELDLSLSDFSGEIPYS 203
+ F L L L + + L Y PK + L L + +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217
Query: 204 IGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263
+ +E +++ T + S+ + S + N+ +
Sbjct: 218 VDVTSSVECLELRD------TDLDTFHFSELSTGETNS----------LIKKFTFRNVKI 261
Query: 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKN 313
SL +V L + L+ + + N+L P F SL+++ L N
Sbjct: 262 TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 32/243 (13%)
Query: 33 RLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-SHLSKLTHLG 90
L L+ L+L++N S +S F L LT+LN + + L + + SHL+KL L
Sbjct: 98 SLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155
Query: 91 LSCRVL--TIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRI 148
+ I+++ F LT L L + +++L +P SL ++ + ++ L L +
Sbjct: 156 VGNMDTFTKIQRKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQH 210
Query: 149 QGNFPDQIF-LLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL 207
+ + ++ L L T S+ S S+
Sbjct: 211 I-LLLEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSLIKK 253
Query: 208 LFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGN 266
V IT + + +S E+ F+ N L +P + L L + L N
Sbjct: 254 FTFRNVKITD-ESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311
Query: 267 SLQ 269
Sbjct: 312 PWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 45/298 (15%), Positives = 100/298 (33%), Gaps = 55/298 (18%)
Query: 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS--FLRNSEKIHGRIS 397
++ LDLSNN + ++ +L L ++ ++ F
Sbjct: 53 AVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSF------------ 96
Query: 398 KHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLV 454
SL LDLS N+L+++ P ++ L+L N +
Sbjct: 97 ----SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK--------------- 137
Query: 455 SNNKLSGQIPPYIC--SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHI 512
+ L+ L+ L + + + I T L L + + L+ +
Sbjct: 138 -------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 513 HDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLP---L 569
+ ++ N+ L+ + L + +E + + + ++ L + L
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 570 LKILILRSNRFYGPLCKSITTFSFQ--ALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
+K R+ + + Q L ++ SRN+ K +P F + +++ +
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 15/178 (8%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISH 82
T+ + S L+ LQ L + + ++I + F L L L S+ P +
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTF-TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Query: 83 LSKLTHLGLSCRVLT-IEQRTFDLLASNLTKLSL--LHLGSTNLSLIKP--FSLLNLSST 137
+ ++HL L + + + D+ S++ L L L + + S + + L T
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255
Query: 138 MTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPK---CNWSSPLRELDLS 192
++ ++ + + + L L N L +P +S L+++ L
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRN-QLKS-VPDGIFDRLTS-LQKIWLH 309
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 32/182 (17%), Positives = 69/182 (37%), Gaps = 5/182 (2%)
Query: 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG 510
+ ++ + S S +L+ +IP T + +L L NN +
Sbjct: 11 LGVIISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPS---GLTEAVKSLDLSNNRITY 66
Query: 511 HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570
+ + N+Q+ L N S + LE +++ N +++ W L L
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126
Query: 571 KILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATR 630
L L N + L ++ L+I+ + + + R++F + ++ ++ A+
Sbjct: 127 TFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185
Query: 631 LQ 632
LQ
Sbjct: 186 LQ 187
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 5e-17
Identities = 54/310 (17%), Positives = 91/310 (29%), Gaps = 90/310 (29%)
Query: 279 LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338
+ NL +T NS++++ + I L
Sbjct: 20 FAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK--------------SVQGIQYL 64
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
N+ L L+ N L N L +L L + + S
Sbjct: 65 PNVTKLFLNGNKLTDIKPLTN------LKNLGWLFLDENKIKDLSSL------------- 105
Query: 399 HDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNN 457
K K L L L +N ++ I L + +L L NNKI
Sbjct: 106 ---KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT------------------ 144
Query: 458 KLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE 517
++ + L+ L LSL N +S I P G T+L L+L N +
Sbjct: 145 DITV-----LSRLTKLDTLSLEDNQIS-DIVPLAGL--TKLQNLYLSKNHI--------- 187
Query: 518 NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRS 577
S+++ +LA L+V+ + + + +L + +
Sbjct: 188 --SDLR---------------ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230
Query: 578 NRFYGPLCKS 587
P S
Sbjct: 231 GSLVTPEIIS 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 4e-10
Identities = 44/298 (14%), Positives = 87/298 (29%), Gaps = 38/298 (12%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
+ D T L+ + + ++ + L +T L + + + +++L
Sbjct: 33 VTDAVTQNELNSIDQIIANNSDI--KSVQG-IQYLPNVTKLFLNGNKLTDI--KPLTNLK 87
Query: 85 KLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
L L L ++ + L +L KL L L +S I L + L L
Sbjct: 88 NLGWLFLDENKIKDLS----SL--KDLKKLKSLSLEHNGISDINGLVHL---PQLESLYL 138
Query: 144 SGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS---LSDFSGEI 200
+I + L L L L N ++ + + L+ L LS +SD
Sbjct: 139 GNNKITD--ITVLSRLTKLDTLSLEDN-QIS-DIVPLAGLTKLQNLYLSKNHISDLRA-- 192
Query: 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTN 260
+ L L+ +++ + NL + L P +S
Sbjct: 193 ---LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEK 247
Query: 261 LDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGT 318
++ + L + VS G + + +
Sbjct: 248 PNVKWH---------LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 55/304 (18%), Positives = 107/304 (35%), Gaps = 73/304 (24%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
+ +L +++ + LN ++ + + + I+ + I LPN+ L+L
Sbjct: 18 DAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 72
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLS---LSDFSGEIPYSIGNLLFLETVDITYCNFMGSI 224
GN LT P N + L L L + D S + +L L+++ + +
Sbjct: 73 NGN-KLTDIKPLTNLKN-LGWLFLDENKIKDLSS-----LKDLKKLKSLSLEHNGI---- 121
Query: 225 PTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVS 284
++I + + L L +L L N + + L L L +
Sbjct: 122 ----------SDI------------NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDT 157
Query: 285 VNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFL 344
++L N+++ I L+ ++L KN I + LKNL L
Sbjct: 158 LSLEDNQISD-IVPLAGLTKLQNLYLSKNHI--------------SDLRALAGLKNLDVL 202
Query: 345 DLSNN-----------NLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIH 393
+L + NL+ + N D P ++ S+ E P+ + +
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII----SDDGDYEKPNVKWHLPEFT 258
Query: 394 GRIS 397
+S
Sbjct: 259 NEVS 262
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 55/341 (16%), Positives = 103/341 (30%), Gaps = 58/341 (17%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
I + NL + + L + + + S+ + I +L
Sbjct: 11 IKQIFPDDAFAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNSDIKSV--QGIQYLP 65
Query: 85 KLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
+T L L+ ++ I+ +NL L L L + + L + L L
Sbjct: 66 NVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLSSLKDL---KKLKSLSL 116
Query: 144 SGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYS 203
I + LP L LYL N ++D +
Sbjct: 117 EHNGISDING--LVHLPQLESLYLGNN---------------------KITDITV----- 148
Query: 204 IGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNL-- 261
+ L L+T+ + N + I L+K + + NH++ + L L NL
Sbjct: 149 LSRLTKLDTLSLED-NQISDIV-PLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 201
Query: 262 -DLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIP 320
+LF K + L +V L + E+ +++ + T
Sbjct: 202 LELFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 260
Query: 321 SSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNID 361
S + K K ++ +T S ++D
Sbjct: 261 VSFIF----YQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 7e-16
Identities = 47/282 (16%), Positives = 83/282 (29%), Gaps = 47/282 (16%)
Query: 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHG 317
+ + ++PS L + + + KL F LE++ + +N +
Sbjct: 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
I + +F L L + + N L + + +LP+L L SN
Sbjct: 69 VIEADVFS-----------NLPKLHEIRIEKANNLLYINPEAFQ---NLPNLQYLLISNT 114
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS-NNFLTHIALHP----WKNIRTLD 432
+ P + + LD+ N + I + L
Sbjct: 115 GIKHLPDVHKIHS--------------LQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160
Query: 433 LRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQIPPYICS-LSSLKYLSLSHNNLSGTIP 488
L N IQ S E+ L NN L ++P + S L +S + ++P
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLP 218
Query: 489 PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530
+L N T E + L
Sbjct: 219 SYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 36/305 (11%), Positives = 81/305 (26%), Gaps = 79/305 (25%)
Query: 302 PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNID 361
P + E+ ++ I+ FS +L+ +++S N++L +
Sbjct: 29 PRNAIELRFVLTKLR------------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76
Query: 362 IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA 421
+LP L ++ N + ++ ++
Sbjct: 77 ---NLPKLHEIRIEKAN----------------NLLY-------------INPEAFQNL- 103
Query: 422 LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYI-CSLSSLKYLSLSH 480
N++ L + N I+ +P L +
Sbjct: 104 ----PNLQYLLISNTGIK----------------------HLPDVHKIHSLQKVLLDIQD 137
Query: 481 NNLSGTIPP-CLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539
N TI + + + L L N ++ + F + + N E
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197
Query: 540 LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRII 599
++++ I+ L +L L+ + + L AL
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL------EKLVALMEA 251
Query: 600 DLSRN 604
L+
Sbjct: 252 SLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 47/265 (17%)
Query: 35 SHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-SHLSKLTHLGLS 92
+ L I F +L + S ++ ++ +++ S+L KL + +
Sbjct: 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87
Query: 93 --CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG 150
+L I F NL L L + +T + + ++
Sbjct: 88 KANNLLYINPEAFQ----NLPNLQYLLISNTGIKHLPDVHKIH----------------- 126
Query: 151 NFPDQIFLLPNLRVLYLCGNIHLTGYLPK---CNWSSPLRELDLSLSDFSGEIPYSIGNL 207
+L + NI++ + + S L L+ + EI S N
Sbjct: 127 --------SLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176
Query: 208 LFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFG 265
L+ ++++ N + +P S + + + LP + L L +
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 235
Query: 266 NSLQGKVPSWLFTLPSLVSVNLAWN 290
K+P+ L L +L+ +L +
Sbjct: 236 LK---KLPT-LEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 34/265 (12%)
Query: 100 QRTFDLLASNLTK--------LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
R F S +T+ L T L +I+ + + +++S +
Sbjct: 11 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEV 69
Query: 152 FPDQIFL-LPNLRVLYLCGNIHLTGYLPK--CNWSSPLRELDLSLSDFSGEIPYSIGNLL 208
+F LP L + + +L Y+ L+ L +S + + L
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128
Query: 209 FLETVDITYCNFMGSIPTST-GNLSKATEIL-FASNHLTGQLPHHVSGLLYLTNLDLFGN 266
+DI + +I ++ LS + IL N + ++ + L L+L N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187
Query: 267 SLQGKVPSWLF-TLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLF 324
+ ++P+ +F V ++++ ++ P G ++ L + +P+
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT--- 241
Query: 325 QLCGTIRFDQFSKLKNLQFLDLSNN 349
KL L L+
Sbjct: 242 ----------LEKLVALMEASLTYP 256
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 47/281 (16%), Positives = 102/281 (36%), Gaps = 46/281 (16%)
Query: 230 NLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAW 289
L+ A +I +++T + + L +T L FG + + L +L+ + L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV--TTIEGVQYLNNLIGLELKD 72
Query: 290 NKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349
N++T + ++ + E+ L N + + L++++ LDL++
Sbjct: 73 NQITD-LAPLKNLTKITELELSGNPLK--------------NVSAIAGLQSIKTLDLTST 117
Query: 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLID 409
+ T L +L L ++ G +L
Sbjct: 118 QITDVTPLAG------LSNLQVLYLDLNQITNISPL----------------AGLTNLQY 155
Query: 410 LDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSGQIPPYI 467
L + N ++ + L + TL +NKI S L P+ + NN++S P +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--L 213
Query: 468 CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508
+ S+L ++L++ ++ P N + + +
Sbjct: 214 ANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 53/286 (18%), Positives = 110/286 (38%), Gaps = 47/286 (16%)
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
+ ++ K+ + T+ + L + L + I+
Sbjct: 20 NAIKIAAGKSNVTDTVT--------------QADLDGITTLSAFGTGV------TTIEGV 59
Query: 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-AL 422
L +L+ L + +++ K + +L+LS N L ++ A+
Sbjct: 60 QYLNNLIGLELKDNQITDLAPL----------------KNLTKITELELSGNPLKNVSAI 103
Query: 423 HPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481
++I+TLDL + +I + L + +V + N+++ I P + L++L+YLS+ +
Sbjct: 104 AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNA 161
Query: 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLA 541
+S + P L N + +L TL +N + + N+ L N+ P LA
Sbjct: 162 QVS-DLTP-LANLS-KLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LA 214
Query: 542 KCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKS 587
L +V + N I + + +L + ++ S P S
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 58/311 (18%), Positives = 110/311 (35%), Gaps = 50/311 (16%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
++ S+ + + +L + T+ +I L+ + N +T
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIE-GVQYLNNLIGLELKDNQIT 76
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSL 305
P + L +T L+L GN L K S + L S+ +++L ++T + ++L
Sbjct: 77 DLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD-VTPLAGLSNL 131
Query: 306 EEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
+ ++L+ NQI P + L NLQ+L + N + T N
Sbjct: 132 QVLYLDLNQITNISP--------------LAGLTNLQYLSIGNAQVSDLTPLAN------ 171
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI-ALHP 424
L L L + +S+ +LI++ L NN ++ + L
Sbjct: 172 LSKLTTLKADDNKISDISPL----------------ASLPNLIEVHLKNNQISDVSPLAN 215
Query: 425 WKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484
N+ + L N I P LV N + G I + + + NL+
Sbjct: 216 TSNLFIVTLTNQTITN----QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLT 271
Query: 485 GTIPPCLGNFT 495
+ + N +
Sbjct: 272 WNLTSFINNVS 282
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 6e-12
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 23/220 (10%)
Query: 405 KSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSGQ 462
+ I + + +T I TL + + + + +N+++
Sbjct: 19 ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-D 77
Query: 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD--TFENAS 520
+ P + +L+ + L LS N L + + + TL L + I D S
Sbjct: 78 LAP-LKNLTKITELELSGNPLK-NVSA-IAGLQ-SIKTLDLTST----QITDVTPLAGLS 129
Query: 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
N+Q L+ N+ P LA L+ +++GN ++D P L +L L L N+
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185
Query: 581 YGPLCKSITTFS-FQALRIIDLSRNEFKDFLPRRNFTSME 619
I+ + L + L N+ D P N +++
Sbjct: 186 -----SDISPLASLPNLIEVHLKNNQISDVSPLANTSNLF 220
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 56/281 (19%), Positives = 99/281 (35%), Gaps = 39/281 (13%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHL 83
I+ L++ + +N + L +T L+ + + + +L
Sbjct: 8 AINVIFPDPALANAIKIAAGKSNV--TDTVT-QADLDGITTLSAFGTGVTTI--EGVQYL 62
Query: 84 SKLTHLGLSCRVLTIEQRTFDLLA-SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142
+ L L L +T DL NLTK++ L L L + + L ++ LD
Sbjct: 63 NNLIGLELKDNQIT------DLAPLKNLTKITELELSGNPLKNVSAIAGL---QSIKTLD 113
Query: 143 LSGTRIQGNFPDQIFLLPNLRVLYLCGN----IHLTGYLPKCNWSSPLRELDLS---LSD 195
L+ T+I P + L NL+VLYL N I L L+ L + +SD
Sbjct: 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTN------LQYLSIGNAQVSD 165
Query: 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGL 255
+ + NL L T+ N + I +L E+ +N ++ P ++
Sbjct: 166 LTP-----LANLSKLTTLKADD-NKISDIS-PLASLPNLIEVHLKNNQISDVSP--LANT 216
Query: 256 LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI 296
L + L ++ + + L V P
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 48/308 (15%), Positives = 103/308 (33%), Gaps = 61/308 (19%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
L + G +N++ + L+ +T L GT + + + L NL L L
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQADLD---GITTLSAFGTGVTT--IEGVQYLNNLIGLEL 70
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
N ++D + + NL + ++++ ++
Sbjct: 71 KDN---------------------QITDLAP-----LKNLTKITELELSGNPL--KNVSA 102
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNL 287
L + S +T P ++GL L L L N + P L L +L +++
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 288 AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLS 347
+++ + + + L + + N+I + L NL + L
Sbjct: 159 GNAQVSD-LTPLANLSKLTTLKADDNKISD--------------ISPLASLPNLIEVHLK 203
Query: 348 NNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSL 407
NN + + N +L ++ +N ++ P F N+ + + +
Sbjct: 204 NNQISDVSPLAN------TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG---API 254
Query: 408 IDLDLSNN 415
+S+N
Sbjct: 255 APATISDN 262
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 38/236 (16%)
Query: 302 PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNID 361
P + + + L N+I + F +NL L L +N L +
Sbjct: 31 PAASQRIFLHGNRIS------------HVPAASFRACRNLTILWLHSNVLARIDA----A 74
Query: 362 IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI- 420
L L +L L ++ ++ + G L L L L +
Sbjct: 75 AFTGLALLEQLD------------LSDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 421 --ALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQIPPYI-CSLSSLK 474
++ L L++N +Q + + N++S +P L SL
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLD 180
Query: 475 YLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530
L L N ++ + P +L+TL+L N+L + +Q LN N
Sbjct: 181 RLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 8e-14
Identities = 44/244 (18%), Positives = 75/244 (30%), Gaps = 46/244 (18%)
Query: 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKH 399
Q + L N + + + +L L + ++ I
Sbjct: 33 ASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLAR--------------IDAA 74
Query: 400 DSKGWKSLIDLDLSNNF-LTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVS 455
G L LDLS+N L + H + TL L +Q
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---------------- 118
Query: 456 NNKLSGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD 514
++ P + L++L+YL L N L +P L L L N +
Sbjct: 119 ------ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Query: 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574
F ++ L+ N+ P + +L + + N ++ L L L+ L
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Query: 575 LRSN 578
L N
Sbjct: 232 LNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 52/267 (19%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192
+ + + L G RI NL +L+L N L +
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLA---------------RID 72
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHH 251
+ F+G L LE +D++ + S+ +T L + + L +L
Sbjct: 73 AAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPG 123
Query: 252 V-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEV 308
+ GL L L L N+LQ +P F L +L + L N+++ P F+ +SL+ +
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
L +N++ + F L L L L NNL + + + L +
Sbjct: 183 LLHQNRVA-HVHPHA-----------FRDLGRLMTLYLFANNLSALPT----EALAPLRA 226
Query: 369 LLKLSFSN------CNVSEFPSFLRNS 389
L L ++ C ++L+
Sbjct: 227 LQYLRLNDNPWVCDCRARPLWAWLQKF 253
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 56/281 (19%), Positives = 88/281 (31%), Gaps = 74/281 (26%)
Query: 76 VPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNL 134
VP I + + L R+ + +F L++L L S L+ I + L
Sbjct: 26 VPVGIP--AASQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTGL 79
Query: 135 SSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193
+ + LDLS + F L L L+L L
Sbjct: 80 AL-LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC---------------------GL 117
Query: 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV- 252
+ + + L +L L N L LP
Sbjct: 118 QELGPGLFRGLAALQYL-------------------YLQ--------DNALQ-ALPDDTF 149
Query: 253 SGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHL 310
L LT+L L GN + VP F L SL + L N++ F+ L ++L
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351
N + +P+ L+ LQ+L L++N
Sbjct: 209 FANNLS-ALPTEALA-----------PLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 52/244 (21%), Positives = 86/244 (35%), Gaps = 46/244 (18%)
Query: 35 SHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS- 92
+ Q + L N S + F + LT L + + + + L+ L L LS
Sbjct: 32 AASQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89
Query: 93 -CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
++ +++ TF L +L LHL L + P L++ + L L +Q
Sbjct: 90 NAQLRSVDPATFH----GLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQ-A 143
Query: 152 FPDQIFL-LPNLRVLYLCGNIHLTGYLPK---CNWSSPLRELDLSLSDFSGEIPYSIGNL 207
PD F L NL L+L GN ++ +P+ S L L L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGN-RIS-SVPERAFRGLHS-LDRLLLH--------------- 185
Query: 208 LFLETVDITYCNFMGSIPTST-GNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFG 265
N + + +L + + +N+L+ LP + L L L L
Sbjct: 186 ----------QNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234
Query: 266 NSLQ 269
N
Sbjct: 235 NPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 12/148 (8%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-SHLS 84
++ +L L L N +RI F L L L+ S + V L
Sbjct: 48 PAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 85 KLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
+L L L C + + F L L L+L L + + +L + +T L L
Sbjct: 106 RLHTLHLDRCGLQELGPGLFR----GLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFL 160
Query: 144 SGTRIQGNFPDQIFL-LPNLRVLYLCGN 170
G RI + P++ F L +L L L N
Sbjct: 161 HGNRIS-SVPERAFRGLHSLDRLLLHQN 187
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 10/147 (6%)
Query: 27 DNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSK 85
D + L+ L+ L+L+ N L + P F L L L+ L P L+
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQL-RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 86 LTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
L +L L + + TF +L L+ L L +S + + L S + L L
Sbjct: 131 LQYLYLQDNALQALPDDTFR----DLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLH 185
Query: 145 GTRIQGNFPDQIFL-LPNLRVLYLCGN 170
R+ + F L L LYL N
Sbjct: 186 QNRVA-HVHPHAFRDLGRLMTLYLFAN 211
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 40/234 (17%)
Query: 223 SIPTSTGNLSKATEILF-ASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-L 279
IP NL +T+ L + N L L + L LDL +Q + + L
Sbjct: 21 KIPD---NLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL 75
Query: 280 PSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338
L ++ L N + + F +SL+++ + + ++ + L
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPI-----------GHL 123
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFP----SFLRNSEKIHG 394
K L+ L++++N + SF +L +L L S+ + L ++
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFS---NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 395 RISKHDSK---------GWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNN 436
+ + L +L L N L + +++ + L N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 59/269 (21%), Positives = 96/269 (35%), Gaps = 66/269 (24%)
Query: 272 VPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTI 330
+P L S +++L++N L F S L+ + L + +I TI +
Sbjct: 22 IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY------ 72
Query: 331 RFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSE 390
L +L L L+ N + S L SL KL N++ +F
Sbjct: 73 -----QSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENFP---- 119
Query: 391 KIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW----KNIRTLDLRNNKIQGSILVPP 446
K+L +L++++N + L + N+ LDL +NKIQ SI
Sbjct: 120 ----------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SI---- 164
Query: 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKY----LSLSHNNLSGTIPPCLGNFT-TQLITL 501
L + L LS N ++ I P G F +L L
Sbjct: 165 -YCTDL---------------RVLHQMPLLNLSLDLSLNPMN-FIQP--GAFKEIRLKEL 205
Query: 502 HLKNNSLEGHIHDTFENASNIQSFDLNCN 530
L N L+ F+ +++Q L+ N
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 34/224 (15%)
Query: 410 LDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPY 466
LDLS N L H+ + + ++ LDL +IQ I
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ----------------------TIEDG 70
Query: 467 ICS-LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525
LS L L L+ N + ++ + + L L +L + + ++
Sbjct: 71 AYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 526 DLNCNKFEGSLPRS--LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583
++ N + S + LE +++ +N I + L L + +L L + P
Sbjct: 130 NVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 584 LCKSITTFSFQ--ALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625
+ I +F+ L+ + L N+ K +P F + +++ +
Sbjct: 189 M-NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIW 230
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 7e-08
Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 33/236 (13%)
Query: 35 SHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSC 93
++L+L+FN + F EL L+ S + LS L+ L L+
Sbjct: 28 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 94 -RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNF 152
+ ++ F L+ L L TNL+ ++ F + +L + +L+++ IQ
Sbjct: 86 NPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFK 140
Query: 153 PDQIFL-LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE 211
+ F L NL L L N + + +D + + L
Sbjct: 141 LPEYFSNLTNLEHLDLSSN-KIQ---------------SIYCTDLRV-----LHQMPLLN 179
Query: 212 TVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGN 266
N M I + E+ +N L +P + L L + L N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 34/164 (20%), Positives = 48/164 (29%), Gaps = 29/164 (17%)
Query: 33 RLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGL 91
LQ L+L+ I + L L+ L + + L S LS L L
Sbjct: 50 SFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 92 -SCRVLTIEQRTFDLLAS---------------------NLTKLSLLHLGSTNLSLIKPF 129
+ ++E L + NLT L L L S + I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 130 ---SLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGN 170
L + LDLS + F L+ L L N
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 9e-13
Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 6/156 (3%)
Query: 405 KSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSGQ 462
SL + L+N +T + + NI+ L + N + + + E + ++
Sbjct: 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103
Query: 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNI 522
P + L+SL L +SH+ +I + ++ ++ L N I + +
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAITDI-MPLKTLPEL 161
Query: 523 QSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558
+S ++ + + KL + + I
Sbjct: 162 KSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 29/169 (17%), Positives = 64/169 (37%), Gaps = 24/169 (14%)
Query: 186 LRELDLS---LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASN 242
L + L+ ++D +G I ++ + I + P S LS +
Sbjct: 46 LTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGK 98
Query: 243 HLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSP 302
+T ++SGL LT LD+ ++ + + + TLP + S++L++N I ++
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158
Query: 303 NSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351
L+ ++++ + +H L L + +
Sbjct: 159 PELKSLNIQFDGVHDYRG--------------IEDFPKLNQLYAFSQTI 193
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 21/184 (11%)
Query: 40 LNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTI 98
LN + I+ ++ LTY+ + N L + I + + L ++
Sbjct: 26 LNGLLGQSSTANITEA--QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNY 81
Query: 99 EQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL 158
S L+ L L + +++ K +L L+S +T LD+S + + +I
Sbjct: 82 NP------ISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINT 134
Query: 159 LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS---LSDFSGEIPYSIGNLLFLETVDI 215
LP + + L N +T +P L+ L++ + D+ G I + L +
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPE-LKSLNIQFDGVHDYRG-----IEDFPKLNQLYA 188
Query: 216 TYCN 219
Sbjct: 189 FSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 44/193 (22%)
Query: 227 STGNLSKATEILFASNHLTGQLPHHVSGLLYLTNL---DLFGNSLQGKVPSWLFTLPSLV 283
+ ++ T I A+ ++T ++G+ Y N+ + + + L +L
Sbjct: 39 TEAQMNSLTYITLANINVT-----DLTGIEYAHNIKDLTINNIHA--TNYNPISGLSNLE 91
Query: 284 SVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQ 342
+ + +T I SL + + + +I + + + L +
Sbjct: 92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI------------NTLPKVN 139
Query: 343 FLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSK 402
+DLS N ++ +I +LP L L+ V ++ +
Sbjct: 140 SIDLSYNGAIT-----DIMPLKTLPELKSLNIQFDGVHDYRGI----------------E 178
Query: 403 GWKSLIDLDLSNN 415
+ L L +
Sbjct: 179 DFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 20/151 (13%), Positives = 58/151 (38%), Gaps = 10/151 (6%)
Query: 470 LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529
++SL Y++L++ N++ + + L + N + + SN++ +
Sbjct: 43 MNSLTYITLANINVTDLTG--IEYAH-NIKDLTINNIHATNY--NPISGLSNLERLRIMG 97
Query: 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSIT 589
+L+ L ++++ ++ +D+ + +LP + + L N I
Sbjct: 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN----GAITDIM 153
Query: 590 TFS-FQALRIIDLSRNEFKDFLPRRNFTSME 619
L+ +++ + D+ +F +
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRGIEDFPKLN 184
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 12/128 (9%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
+ + + LS+L+ L + + +I L LT L+ S S + ++I+ L
Sbjct: 78 ATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 85 KLTHLGLS-CRVLTIEQRTFDLLA-SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142
K+ + LS +T D++ L +L L++ + + + + L
Sbjct: 137 KVNSIDLSYNGAIT------DIMPLKTLPELKSLNIQFDGVHDYRGIE--DFPK-LNQLY 187
Query: 143 LSGTRIQG 150
I G
Sbjct: 188 AFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 18/150 (12%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
+ D + + +++ L + + + +P L L L + +S L+
Sbjct: 56 VTDLTGIEYAHNIKDLTINNIHA--TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLT 112
Query: 85 KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTN-LSLIKPFS-LLNLSSTMTDLD 142
LT L +S T + L K++ + L ++ I P L L L+
Sbjct: 113 SLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIMPLKTLPEL----KSLN 165
Query: 143 LSGTRIQGNFPDQIFL--LPNLRVLYLCGN 170
+ + D + P L LY
Sbjct: 166 IQFDGVH----DYRGIEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 30/169 (17%), Positives = 59/169 (34%), Gaps = 12/169 (7%)
Query: 104 DLLASNLTKLSLLHLGSTNLSLIKPFSLL-NLSSTMTDLDLSGTRIQGNFPDQIFLLPNL 162
++ + + L+ + L + N++ + N+ DL ++ P I L NL
Sbjct: 37 NITEAQMNSLTYITLANINVTDLTGIEYAHNI----KDLTINNIHATNYNP--ISGLSNL 90
Query: 163 RVLYLCGNIHLTGYLPKCNWSSP-LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFM 221
L + G +T L LD+S S I I L + ++D++Y +
Sbjct: 91 ERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 222 GSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQG 270
I L + + + + + L L F ++ G
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 9e-13
Identities = 82/470 (17%), Positives = 151/470 (32%), Gaps = 90/470 (19%)
Query: 183 SSPLRELDLSLSDFSGE-IPYSIGNLLFLETVDITYCNF----MGSIPTSTGNLSKATEI 237
S ++ LD+ + S + L + V + C I ++ E+
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 238 LFASNHLTGQLPHHVSGLL-----YLTNLDLFGNSLQGK----VPSWLFTLPSLVSVNLA 288
SN L H V L + L L L G + S L TLP+L ++L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 289 WNKLTGP-----IDGFQSPNS-LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQ 342
N L +G P LE++ LE + L + + +
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--------LRAKPDFK 173
Query: 343 FLDLSNNNLLSFTSSGNIDI----KYSLPSLLKLSFSNCNVSE-----FPSFLRNSE--- 390
L +SNN++ +G + K S L L +C V+ + +
Sbjct: 174 ELTVSNNDI---NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230
Query: 391 -------KIHGRISKHDSKGWK----SLIDLDLSNNFLTHI-------ALHPWKNIRTLD 432
K+ G L L + +T L ++++ L
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290
Query: 433 LRNNKIQGS--------ILVPPPSTEVFLVSNNKLSGQIPPYICSL----SSLKYLSLSH 480
L N++ +L P E V + + + S+ L L +S+
Sbjct: 291 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Query: 481 NNLSGT----IPPCLGNFTTQLITLHLKNNSL--EG--HIHDTFENASNIQSFDLNCNKF 532
N L + LG + L L L + + + T +++ DL+ N
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Query: 533 EGSLPRSLAKCVK-----LEVVNVGNNMINDTFPCWLGSL----PLLKIL 573
+ L + V+ LE + + + ++ L +L P L+++
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 78/415 (18%), Positives = 130/415 (31%), Gaps = 86/415 (20%)
Query: 253 SGLLYLTNLDLFGNSLQGK----VPSWLFTLPSLVSVNLAWNKLTGP-----IDGFQSPN 303
L + L L + S L P+L +NL N+L + G Q+P+
Sbjct: 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84
Query: 304 -SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDI 362
++++ L+ + G L L LQ L LS+N L +G +
Sbjct: 85 CKIQKLSLQNCCLTGAGCGVLSST--------LRTLPTLQELHLSDNLL---GDAGLQLL 133
Query: 363 ----KYSLPSLLKLSFSNCNVSE-----FPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413
L KL C++S S LR +L +S
Sbjct: 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK---------------PDFKELTVS 178
Query: 414 NNFLTHIAL--------HPWKNIRTLDLRNNKIQ-------GSILVPPPSTEVFLVSNNK 458
NN + + + L L + + I+ S + +NK
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 459 LSGQIPPYIC-----SLSSLKYLSLSHNNLS----GTIPPCLGNFTTQLITLHLKNNSLE 509
L +C S L+ L + ++ G + L + L L L N L
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSLAGNELG 297
Query: 510 G----HIHDTFENA-SNIQSFDLNCNKFEG----SLPRSLAKCVKLEVVNVGNNMINDTF 560
+ +T ++S + F LA+ L + + NN + D
Sbjct: 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357
Query: 561 PCWLG-----SLPLLKILILRSNRFYGPLCKSITTF--SFQALRIIDLSRNEFKD 608
L +L++L L C S+ + +LR +DLS N D
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 53/314 (16%), Positives = 105/314 (33%), Gaps = 62/314 (19%)
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSE-----FPSFLRNSEKIH 393
++Q LD+ L + + ++ L + +C ++E S LR +
Sbjct: 3 LDIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN---- 55
Query: 394 GRISKHDSKGWKSLIDLDLSNNFLTHIAL--------HPWKNIRTLDLRNNKIQ------ 439
+L +L+L +N L + + P I+ L L+N +
Sbjct: 56 -----------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104
Query: 440 -GSILVPPPSTEVFLVSNNKLSGQIPPYICSL-----SSLKYLSLSHNNLSGTIPPCLGN 493
S L P+ + +S+N L +C L+ L L + +LS L +
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164
Query: 494 ---FTTQLITLHLKNNSLEG----HIHDTFE-NASNIQSFDLNCNKFE----GSLPRSLA 541
L + NN + + + + +++ L L +A
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224
Query: 542 KCVKLEVVNVGNNMINDTFPCWLGSLPL-----LKILILRSNRFYGPLCKSITTF--SFQ 594
L + +G+N + D L L L+ L + C + + +
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284
Query: 595 ALRIIDLSRNEFKD 608
+L+ + L+ NE D
Sbjct: 285 SLKELSLAGNELGD 298
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 77/462 (16%), Positives = 130/462 (28%), Gaps = 106/462 (22%)
Query: 34 LSHLQSLNLAFNNFLGSR----ISPEFGRLKELTYLNPSFSNFGGLVPSEISHL-----S 84
L Q + L L IS L LN + G + +
Sbjct: 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85
Query: 85 KLTHLGLSCRVLTIE--QRTFDLLASNLTKLSLLHLGSTNLSL--IKPFS--LLNLSSTM 138
K+ L L LT L + L LHL L ++ LL+ +
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144
Query: 139 TDLDLSGTRIQGNFPDQIFLL----PNLRVLYLCGN-------IHLTGYLPKCNWSSPLR 187
L L + + + + P+ + L + N L L L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ--LE 202
Query: 188 ELDLSLSDFSGEIPYSIGNLL----FLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243
L L + + + ++ L + +
Sbjct: 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV----------------GMAE 246
Query: 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGK----VPSWLFTLPSLVSVNLAWNKLTGP---- 295
L L H S L L ++ + K + L SL ++LA N+L
Sbjct: 247 LCPGLLHPSSR---LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 296 -IDGFQSPN-SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
+ P LE + ++ S + ++ + L L +SNN L
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL--------AQNRFLLELQISNNRL-- 353
Query: 354 FTSSGNIDI----KYSLPSLLKLSFSNCNVSE-----FPSFLRNSEKIHGRISKHDSKGW 404
+G ++ L L ++C+VS+ + L +
Sbjct: 354 -EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN--------------- 397
Query: 405 KSLIDLDLSNNFLTHIAL--------HPWKNIRTLDLRNNKI 438
SL +LDLSNN L + P + L L +
Sbjct: 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 58/219 (26%), Positives = 83/219 (37%), Gaps = 44/219 (20%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPS 281
IP T L SN L+ LP L L L L N LQ +P+ +F L +
Sbjct: 35 IPADTKKLD------LQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
L ++ + NKL PI F +L E+ L++NQ+ ++P +F L
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF-----------DSLTK 134
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHD 400
L +L L N L S G D L SL +L N + P +
Sbjct: 135 LTYLSLGYNELQSL-PKGVFD---KLTSLKELRLYNNQLKRVPEGAFD------------ 178
Query: 401 SKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNN 436
L L L NN L + A + ++ L L+ N
Sbjct: 179 --KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 59/277 (21%), Positives = 95/277 (34%), Gaps = 83/277 (29%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
++D L +PS + ++L NKL+ P F L ++L N++
Sbjct: 18 KNSVDCSSKKLTA-IPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
T+P+ +F +LKNL+ L +++N L + LP
Sbjct: 75 -TLPAGIF-----------KELKNLETLWVTDNKLQA------------LPI-------- 102
Query: 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDL 433
V + L L L N L + + L L
Sbjct: 103 -GVFDQLVNLAE---------------------LRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 434 RNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGN 493
N++Q S+ P VF L+SLK L L +N L +P +
Sbjct: 141 GYNELQ-SL---PKG--VF---------------DKLTSLKELRLYNNQLK-RVPEGAFD 178
Query: 494 FTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530
T+L TL L NN L+ F++ ++ L N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 406 SLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKL 459
L L L++N L + KN+ TL + +NK+Q + + + N+L
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 460 SGQIPPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTF 516
+PP + SL+ L YLSL +N L ++P G F T L L L NN L+ F
Sbjct: 122 K-SLPPRVFDSLTKLTYLSLGYNELQ-SLPK--GVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 517 ENASNIQSFDLNCNKFEGSLPR 538
+ + +++ L+ N+ + +P
Sbjct: 178 DKLTELKTLKLDNNQLK-RVPE 198
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 410 LDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPS--------TEVFLVSNNK 458
LDL +N L+ + A H +R L L +NK+Q ++ P +++ ++NK
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TL---PAGIFKELKNLETLWV-TDNK 96
Query: 459 LSGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDT 515
L +P + L +L L L N L ++PP F T+L L L N L+
Sbjct: 97 LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 516 FENASNIQSFDLNCNKFEGSLPRSL-AKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574
F+ ++++ L N+ + +P K +L+ + + NN + SL LK+L
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 575 LRSN 578
L+ N
Sbjct: 212 LQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 17/140 (12%)
Query: 37 LQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRV 95
+ L+L N S + + F RL +L L + + L L L L ++
Sbjct: 39 TKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 96 LT-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKP--F-SLLNLSSTMTDLDLSGTRIQGN 151
L + FD L L+ L L L + P F SL L T L L +Q +
Sbjct: 97 LQALPIGVFD----QLVNLAELRLDRNQLKSLPPRVFDSLTKL----TYLSLGYNELQ-S 147
Query: 152 FPDQIF-LLPNLRVLYLCGN 170
P +F L +L+ L L N
Sbjct: 148 LPKGVFDKLTSLKELRLYNN 167
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 52/245 (21%), Positives = 85/245 (34%), Gaps = 55/245 (22%)
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR 395
+L ++ + + L S+ ++ +N ++
Sbjct: 21 DAFAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNSDIKSVQGI---------- 64
Query: 396 ISKHDSKGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLV 454
+ ++ L L+ N LT I L KN+ L L NK+
Sbjct: 65 ------QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV---------------- 102
Query: 455 SNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD 514
LS + L LK LSL HN +S I L + QL +L+L NN + I
Sbjct: 103 --KDLSS-----LKDLKKLKSLSLEHNGIS-DING-LVHL-PQLESLYLGNNKIT-DI-T 150
Query: 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574
+ + + L N+ + LA KL+ + + N I+D L L L +L
Sbjct: 151 VLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 206
Query: 575 LRSNR 579
L S
Sbjct: 207 LFSQE 211
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 55/310 (17%), Positives = 91/310 (29%), Gaps = 90/310 (29%)
Query: 279 LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338
+ NL +T NS++++ + I L
Sbjct: 23 FAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIK--------------SVQGIQYL 67
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
N+ L L+ N L N L +L L V + S
Sbjct: 68 PNVTKLFLNGNKLTDIKPLAN------LKNLGWLFLDENKVKDLSSL------------- 108
Query: 399 HDSKGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNN 457
K K L L L +N ++ I L + +L L NNKI
Sbjct: 109 ---KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT------------------ 147
Query: 458 KLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE 517
++ + L+ L LSL N +S I P G T+L L+L N +
Sbjct: 148 DITV-----LSRLTKLDTLSLEDNQIS-DIVPLAGL--TKLQNLYLSKNHI--------- 190
Query: 518 NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRS 577
S++++ LA L+V+ + + + +L + +
Sbjct: 191 --SDLRA---------------LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233
Query: 578 NRFYGPLCKS 587
P S
Sbjct: 234 GSLVTPEIIS 243
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 46/301 (15%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
+ +L + + L ++ + + + S+ L T++ N LT
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIA-NNSDIKSV-QGIQYLPNVTKLFLNGNKLT 81
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSL 305
P ++ L L L L N ++ L L L S++L N ++ I+G L
Sbjct: 82 DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD-INGLVHLPQL 136
Query: 306 EEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
E ++L N+I S+L L L L +N +
Sbjct: 137 ESLYLGNNKIT--------------DITVLSRLTKLDTLSLEDNQISDIVPLAG------ 176
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW 425
L L L S ++S+ + G K+L L+L + + ++
Sbjct: 177 LTKLQNLYLSKNHISDLRAL----------------AGLKNLDVLELFSQECLNKPINHQ 220
Query: 426 KNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485
N+ + N GS++ P ++ + +P + +S + Y ++
Sbjct: 221 SNLVVPNTVKN-TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 279
Query: 486 T 486
Sbjct: 280 R 280
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 42/213 (19%), Positives = 76/213 (35%), Gaps = 23/213 (10%)
Query: 412 LSNNFLTHI-ALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSGQIPPYICS 469
+ I + + +L+ + S + + +N+ + + I
Sbjct: 9 TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG-IQY 66
Query: 470 LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD--TFENASNIQSFDL 527
L ++ L L+ N L+ I P L N L L L N + D + ++ ++S L
Sbjct: 67 LPNVTKLFLNGNKLT-DIKP-LANL-KNLGWLFLDEN----KVKDLSSLKDLKKLKSLSL 119
Query: 528 NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKS 587
N + L +LE + +GNN I D L L L L L N+
Sbjct: 120 EHNGIS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI-----SD 170
Query: 588 ITTFS-FQALRIIDLSRNEFKDFLPRRNFTSME 619
I + L+ + LS+N D +++
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLD 203
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 47/260 (18%), Positives = 93/260 (35%), Gaps = 58/260 (22%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
+ +L +++ + LN ++ + + + I+ I LPN+ L+L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQG--IQYLPNVTKLFL 75
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLS---LSDFSGEIPYSIGNLLFLETVDITYCNFMGSI 224
GN LT P N + L L L + D S + +L L+++ + +
Sbjct: 76 NGN-KLTDIKPLANLKN-LGWLFLDENKVKDLSS-----LKDLKKLKSLSLEHNGI---- 124
Query: 225 PTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVS 284
++I + + L L +L L N + + L L L +
Sbjct: 125 ----------SDI------------NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDT 160
Query: 285 VNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFL 344
++L N+++ I L+ ++L KN I + LKNL L
Sbjct: 161 LSLEDNQISD-IVPLAGLTKLQNLYLSKNHIS--------------DLRALAGLKNLDVL 205
Query: 345 DLSNNNLLSFTSSGNIDIKY 364
+L + L+ + ++
Sbjct: 206 ELFSQECLNKPINHQSNLVV 225
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 18/175 (10%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
P +E V + QI + + +L +++ + + + N
Sbjct: 2 PLGSETITV-PTPIK-QIFS-DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANN 55
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565
+ ++ + + N+ LN NK P LA L + + N + D L
Sbjct: 56 SDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LK 109
Query: 566 SLPLLKILILRSNRFYGPLCKSITTFS-FQALRIIDLSRNEFKDFLPRRNFTSME 619
L LK L L N I L + L N+ D T ++
Sbjct: 110 DLKKLKSLSLEHNGI-----SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 48/272 (17%), Positives = 83/272 (30%), Gaps = 29/272 (10%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
I + + NL + + L + + + S+ + I +L
Sbjct: 14 IKQIFSDDAFAETIKDNLKKKSV--TDAVT-QNELNSIDQIIANNSDIKSV--QGIQYLP 68
Query: 85 KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
+T L L+ LT L +NL L L L + + L + L L
Sbjct: 69 NVTKLFLNGNKLT---DIKPL--ANLKNLGWLFLDENKVKDLSSLKDL---KKLKSLSLE 120
Query: 145 GTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS---LSDFSGEIP 201
I + LP L LYL N +T + L L L +SD
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNN-KITDITVLSRLTK-LDTLSLEDNQISDIVP--- 173
Query: 202 YSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNL 261
+ L L+ + ++ N + + L + S + +H S L+ +
Sbjct: 174 --LAGLTKLQNLYLSK-NHISDLRALA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229
Query: 262 DLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT 293
SL P + N+ W+
Sbjct: 230 KNTDGSLV--TPEIISDDGDYEKPNVKWHLPE 259
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 54/255 (21%), Positives = 87/255 (34%), Gaps = 61/255 (23%)
Query: 279 LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338
+ S + VN LT P +HL +N + T +
Sbjct: 9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLL-YTFSLATL-----------MPY 54
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
L L+L L + + +LP L L S+ + P +
Sbjct: 55 TRLTQLNLDRAELTK------LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPA------- 101
Query: 399 HDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVS 455
L LD+S N LT + AL ++ L L+ N+++ ++ PP +
Sbjct: 102 --------LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TL---PPG--LLT-- 145
Query: 456 NNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDT 515
L+ LSL++NNL+ +P L N L TL L+ NSL
Sbjct: 146 -------------PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 516 FENASNIQSFDLNCN 530
F + + L+ N
Sbjct: 192 FGS-HLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 60/246 (24%), Positives = 83/246 (33%), Gaps = 49/246 (19%)
Query: 107 ASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLY 166
S + ++ NL+ + P +L T L LS + + L L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 167 LCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPT 226
L LT L L LDLS N + S+P
Sbjct: 62 LDRA-ELT-KLQVDGTLPVLGTLDLS-------------------------HNQLQSLPL 94
Query: 227 STGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVS 284
L T + + N LT LP GL L L L GN L+ +P L T P L
Sbjct: 95 LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEK 152
Query: 285 VNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQF 343
++LA N LT P +L+ + L++N ++ TIP F L F
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG------------SHLLPF 199
Query: 344 LDLSNN 349
L N
Sbjct: 200 AFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 180 CNWSSPLRELDLS---LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKAT 235
+ + E++ L+ ++P L N + + +T ++ T
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHL-------SENLLYTFSLATLMPYTRLT 58
Query: 236 EILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG- 294
++ LT +L L L LDL N LQ +P TLP+L +++++N+LT
Sbjct: 59 QLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 295 PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
P+ + L+E++L+ N++ T+P L + L+ L L+NNNL
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLL-----------TPTPKLEKLSLANNNLTE 162
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 29/202 (14%)
Query: 427 NIRTLDLRNNKIQGSILVP---PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483
+ ++ + +P P T + +S N L + + L L+L L
Sbjct: 11 SHLEVNCDKRNLTA---LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67
Query: 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL-AK 542
+ + L TL L +N L+ + + + D++ N+ SLP
Sbjct: 68 T-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 543 CVKLEVVNVGNNMI----NDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ---A 595
+L+ + + N + P L+ L L +N +
Sbjct: 123 LGELQELYLKGNELKTLPPGLL----TPTPKLEKLSLANNNL-----TELPAGLLNGLEN 173
Query: 596 LRIIDLSRNEFKDFLPRRNFTS 617
L + L N +P+ F S
Sbjct: 174 LDTLLLQENSLYT-IPKGFFGS 194
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 34/140 (24%), Positives = 46/140 (32%), Gaps = 12/140 (8%)
Query: 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS 92
+ L LNL G L L L+ S N +P L LT L +S
Sbjct: 53 PYTRLTQLNLDRAEL---TKLQVDGTLPVLGTLDLS-HNQLQSLPLLGQTLPALTVLDVS 108
Query: 93 CRVLT-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
LT + L +L L+L L + P L + L L+ +
Sbjct: 109 FNRLTSLPLGALR----GLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLT-E 162
Query: 152 FPDQIFL-LPNLRVLYLCGN 170
P + L NL L L N
Sbjct: 163 LPAGLLNGLENLDTLLLQEN 182
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 51/232 (21%), Positives = 75/232 (32%), Gaps = 62/232 (26%)
Query: 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGST 121
T L+ S + + + ++LT L L LT + + L L L L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDG----TLPVLGTLDLSHN 87
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLYLCGNIHLTGYLPKC 180
L + P L + T LD+S R+ + P L L+ LYL GN L
Sbjct: 88 QLQSL-PLLGQTLPAL-TVLDVSFNRLT-SLPLGALRGLGELQELYLKGN-ELK------ 137
Query: 181 NWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST-GNLSKATEILF 239
++P K ++
Sbjct: 138 ------------------------------------------TLPPGLLTPTPKLEKLSL 155
Query: 240 ASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWN 290
A+N+LT +LP + +GL L L L NSL +P F L L N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 89/532 (16%), Positives = 153/532 (28%), Gaps = 155/532 (29%)
Query: 46 NFLGSRIS-----PEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQ 100
FL S I P + + +++ +S L L R +E
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALLEL 147
Query: 101 RTFDLLASNLTKLSLLH--LGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIF- 157
R A N+ + LGS K + + ++Q +IF
Sbjct: 148 RP----AKNVL----IDGVLGSG-----K--------TWVALDVCLSYKVQCKMDFKIFW 186
Query: 158 -----------LLPNLRVLYLCGNIHLTG-YLPKCNWSSPLR----ELDLSLSDFSGEIP 201
+L L+ L + + + + SS ++ + L P
Sbjct: 187 LNLKNCNSPETVLEMLQKLLY----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 202 YSIGNLLFLETV---------DITYC------------NFMGSIPTS-------TGNLSK 233
Y LL L V +++ C +F+ + T+ + L+
Sbjct: 243 YENC-LLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 234 A-TEILFAS--NHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWN 290
+ L + LP V L + S++ + +W ++ +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWK------HVNCD 353
Query: 291 KLTGPIDGF---QSPNSLEEVH-----LEKNQIHGTIPSSLFQL--CGTIRFDQFSKLKN 340
KLT I+ P ++ + H IP+ L L I+ D +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AH--IPTILLSLIWFDVIKSDVMVVVNK 410
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSL-LKLSFSNCNVSEFPSFLRNSEKIHGRI--- 396
L L T S+PS+ L+L L N +H I
Sbjct: 411 LHKYSLVEKQPKEST--------ISIPSIYLELKVK----------LENEYALHRSIVDH 452
Query: 397 -SKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRT-----------LDLR--NNKIQGSI 442
+ + LI L F +HI H KNI LD R KI+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 443 LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF 494
S + N L Q+ Y Y+ + + + +F
Sbjct: 512 TAWNASGSI----LNTLQ-QLKFY------KPYICDNDPKYERLVNA-ILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 82/528 (15%), Positives = 156/528 (29%), Gaps = 161/528 (30%)
Query: 195 DF-SGEIPYSIGNLL------FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQ 247
DF +GE Y ++L F++ D + ++ EI +H+
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKD------VQDMPKSILSKEEI----DHIIMS 57
Query: 248 LPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLE 306
VSG L L + + F + ++ +N + L PI + P+ +
Sbjct: 58 -KDAVSGTLRL--FWTL--LSKQEEMVQKF-VEEVLRINYKF--LMSPIKTEQRQPSMMT 109
Query: 307 EVHLE-KNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
+++E +++++ +F R + KL+
Sbjct: 110 RMYIEQRDRLYNDNQ--VFAKYNVSRLQPYLKLRQ------------------------- 142
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGW-KS------LIDLDLSNNFLT 418
+LL+L NV I G G K+ + +
Sbjct: 143 --ALLELR-PAKNVL-----------IDGV------LGSGKTWVALDVCLSYKVQCKMDF 182
Query: 419 HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKY-LS 477
I W L+L+N ++L KL QI P S S +
Sbjct: 183 KIF---W-----LNLKNCNSPETVLEML----------QKLLYQIDPNWTSRSDHSSNIK 224
Query: 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC-------N 530
L +++ + +L+ N L + +NA +F+L+C
Sbjct: 225 LRIHSIQAEL--------RRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 531 KFEGSLPRSL--AKCVKLEVVNVGNNMINDT----FPCWLG----SLP------------ 568
K + L A + + + + D +L LP
Sbjct: 275 K---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 569 ----LLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAM-KN 623
++ + + + C +TT II+ S N + R+ F + +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTT-------IIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 624 VDEQATRLQ-YMGHAYYDESVTVAMKGHDFQLYMLNLDQ----IYIPN 666
L + + V K H + L + I IP+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPS 430
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 48/342 (14%), Positives = 103/342 (30%), Gaps = 66/342 (19%)
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
S+E L+ + I + + + +++ + LS N + G +
Sbjct: 5 SIEGKSLKLDAI---TTEDEKSVFAVLL-----EDDSVKEIVLSGNTI------GTEAAR 50
Query: 364 Y------SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417
+ S L FS+ + + ++ + L + LS+N
Sbjct: 51 WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC----PKLHTVRLSDNAF 106
Query: 418 THI-------ALHPWKNIRTLDLRNNKI--QGSILVPPPSTEVFLVSNNKLSGQIPPYIC 468
L + L L NN + Q + E+ + K +
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA-------- 158
Query: 469 SLSSLKYLSLSHNNLSG----TIPPCLGNFTTQLITLHLKNNSL-----EGHIHDTFENA 519
L+ + N L + L T+ + N + E + +
Sbjct: 159 --PPLRSIICGRNRLENGSMKEWAKTFQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYC 215
Query: 520 SNIQSFDLNCNKF--EG--SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSL------PL 569
++ DL N F G +L +L L + + + +++ +
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275
Query: 570 LKILILRSNRFYGPLCKSITTF---SFQALRIIDLSRNEFKD 608
L+ L L+ N +++ T L ++L+ N F +
Sbjct: 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 47/255 (18%), Positives = 80/255 (31%), Gaps = 51/255 (20%)
Query: 405 KSLIDLDLSNNFLTHI-------ALHPWKNIRTLDLRNNKIQ-------GSILVPPPSTE 450
S+ L + +T L +++ + L N I + E
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 451 VFLVSNN---KLSGQIPPYICSLS-------SLKYLSLSHNNLSGTIPPCLGNF---TTQ 497
+ S+ ++ +IP + L L + LS N T L +F T
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 498 LITLHLKNNSL-------------EGHIHDTFENASNIQSFDLNCNKFEG----SLPRSL 540
L L+L NN L E ++ +NA ++S N+ E ++
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 541 AKCVKLEVVNVGNNMINDTFPCW-----LGSLPLLKILILRSNRFYGPLCKSITTF--SF 593
L V + N I L LK+L L+ N F ++ S+
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 594 QALRIIDLSRNEFKD 608
LR + L+
Sbjct: 244 PNLRELGLNDCLLSA 258
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 50/284 (17%), Positives = 88/284 (30%), Gaps = 63/284 (22%)
Query: 258 LTNLDL---FGNSLQGKVP-------SWLFTLPSLVSVNLAWNKLTGPI------DGFQS 301
L + F ++ ++P L P L +V L+ N GP D
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSK 120
Query: 302 PNSLEEVHLEKNQIHGTIPSSLFQ-LCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360
LE ++L N + + + + L + L+ + N L +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL---ENGSMK 177
Query: 361 DIKYSL---PSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417
+ + L + + E I + + + L LDL +N
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIR--------PEGIEHLLLEG-LAYCQELKVLDLQDNTF 228
Query: 418 THI-------ALHPWKNIRTLDLRNNKI--QGSILVPPPSTEVFLVSNNKLSGQIPPYIC 468
TH+ AL W N+R L L + + +G+ V + F N
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV----VDAFSKLENI---------- 274
Query: 469 SLSSLKYLSLSHNNLSG----TIPPCLGNFTTQLITLHLKNNSL 508
L+ L L +N + T+ + L+ L L N
Sbjct: 275 ---GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 6e-10
Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 13/167 (7%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYI--CSLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITL 501
P T + +S+N LS ++ L++L L LSHN+L+ I F L L
Sbjct: 38 PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVPNLRYL 93
Query: 502 HLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI----N 557
L +N L F + ++ L N + +L+ + + N I
Sbjct: 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
Query: 558 DTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604
+ LP L +L L SN+ + + L N
Sbjct: 154 ELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 42/208 (20%)
Query: 211 ETVDITYCNFMG--SIPTSTGNLSKATEIL-FASNHLTGQLPHHV-SGLLYLTNLDLFGN 266
+ C+ ++P +L T +L + N+L+ + L L +L L N
Sbjct: 21 NILS---CSKQQLPNVPQ---SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74
Query: 267 SLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLF 324
L + S F +P+L ++L+ N L F +LE + L N I + + F
Sbjct: 75 HLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAF 132
Query: 325 QLCGTIR----------------FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
+ ++ +KL L LDLS+N L + LP+
Sbjct: 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL----KKLPLTDLQKLPA 188
Query: 369 LLKLSFS--------NCNVSEFPSFLRN 388
+K +C + + S +
Sbjct: 189 WVKNGLYLHNNPLECDCKLYQLFSHWQY 216
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 47/188 (25%), Positives = 69/188 (36%), Gaps = 38/188 (20%)
Query: 258 LTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQI 315
LDL N+L W T L +L S+ L+ N L + F +L + L N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 316 HGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFS 375
H T+ LF L+ L+ L L NN+++ + + L KL S
Sbjct: 101 H-TLDEFLFS-----------DLQALEVLLLYNNHIVVV-DRNAFE---DMAQLQKLYLS 144
Query: 376 NCNVSEFPS--FLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNI----- 428
+S FP D L+ LDLS+N L + L + +
Sbjct: 145 QNQISRFPVELI-------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Query: 429 RTLDLRNN 436
L L NN
Sbjct: 192 NGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 35 SHLQSLNLAFNNFLGSRISPE--FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS 92
S+ L+L+ NN SR+ E RL L L S ++ + + L +L LS
Sbjct: 39 SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 93 -CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN 151
+ T+++ F +L L +L L + ++ ++ + +++ + L LS +I
Sbjct: 97 SNHLHTLDEFLFS----DLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQIS-R 150
Query: 152 FPDQIFL----LPNLRVLYLCGN 170
FP ++ LP L +L L N
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSN 173
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 5e-09
Identities = 38/200 (19%), Positives = 60/200 (30%), Gaps = 55/200 (27%)
Query: 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS--FLRNSEKIHGRIS 397
LDLS+NNL + L +L L S+ +++ S F
Sbjct: 40 YTALLDLSHNNLSRLRAEW---TPTRLTNLHSLLLSHNHLNFISSEAF------------ 84
Query: 398 KHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLV 454
+L LDLS+N L + + + L L NN I
Sbjct: 85 ----VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--------------- 125
Query: 455 SNNKLSGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFT-----TQLITLHLKNNSL 508
+ ++ L+ L LS N +S P +L+ L L +N L
Sbjct: 126 -------VVDRNAFEDMAQLQKLYLSQNQIS-RFPV--ELIKDGNKLPKLMLLDLSSNKL 175
Query: 509 EGHIHDTFENASNIQSFDLN 528
+ + L
Sbjct: 176 KKLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 24 TIDDNSTLFRLSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISH 82
+ T RL++L SL L+ N+ + IS E F + L YL+ S ++ L S
Sbjct: 53 RLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110
Query: 83 LSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKP--FSLLNLSSTMT 139
L L L L ++ +++ F+ ++ +L L+L +S N +
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166
Query: 140 DLDLSGTRIQGNFPDQIFLLPNL--RVLYLCGN 170
LDLS +++ + LP LYL N
Sbjct: 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 47/244 (19%), Positives = 70/244 (28%), Gaps = 82/244 (33%)
Query: 272 VPSWLFTLPSLVSVNLAWNKLT--GPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGT 329
VP L ++L+ N L+ +L + L N ++ I S
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS-------- 81
Query: 330 IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNS 389
+ F + NL++LDLS+N+L + L L
Sbjct: 82 ---EAFVPVPNLRYLDLSSNHLHTLDEF-------LFSDLQALE---------------- 115
Query: 390 EKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPP 446
L L NN + + A ++ L L N+I P
Sbjct: 116 -------------------VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS---RFPV 153
Query: 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQL--ITLHLK 504
E+ N L L L LS N L +P L+L
Sbjct: 154 ---ELIKDGNK------------LPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLH 197
Query: 505 NNSL 508
NN L
Sbjct: 198 NNPL 201
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 23/133 (17%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPS 281
+P + TEI N + +P S L +DL N + ++ F L S
Sbjct: 30 LPETI------TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
L S+ L NK+T P F+ SL+ + L N+I+ +R D F L N
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN------------CLRVDAFQDLHN 129
Query: 341 LQFLDLSNNNLLS 353
L L L +N L +
Sbjct: 130 LNLLSLYDNKLQT 142
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 29/150 (19%)
Query: 410 LDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPY 466
+ L N + I A P+K +R +DL NN+I + P + F
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE---LAP---DAFQ------------- 77
Query: 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTFENASNIQS 524
L SL L L N ++ +P F L L L N + D F++ N+
Sbjct: 78 --GLRSLNSLVLYGNKIT-ELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554
L NK + + + ++ +++ N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 11/136 (8%)
Query: 38 QSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
+ L N I P F K+L ++ S + L P L L L L +
Sbjct: 35 TEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 97 T-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQ 155
T + + F+ L L LL L + ++ ++ + +L + + L L ++Q
Sbjct: 93 TELPKSLFE----GLFSLQLLLLNANKINCLRVDAFQDLHN-LNLLSLYDNKLQ-TIAKG 146
Query: 156 IF-LLPNLRVLYLCGN 170
F L ++ ++L N
Sbjct: 147 TFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 40/171 (23%)
Query: 272 VPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTI 330
+P+ L ++ + L N + P F L + L NQI + FQ
Sbjct: 26 IPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ----- 77
Query: 331 RFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFP--SFLRN 388
L++L L L N + + L SL L + ++ +F
Sbjct: 78 ------GLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVDAF--- 124
Query: 389 SEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNN 436
+ +L L L +N L I P + I+T+ L N
Sbjct: 125 -------------QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 31/156 (19%), Positives = 52/156 (33%), Gaps = 30/156 (19%)
Query: 427 NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPP-YICSLSSLKYLSLSHNNLSG 485
I + L N I+ IPP L+ + LS+N +S
Sbjct: 33 TITEIRLEQNTIK----------------------VIPPGAFSPYKKLRRIDLSNNQIS- 69
Query: 486 TIPPCLGNFT--TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR-SLAK 542
+ P F L +L L N + FE ++Q LN NK L +
Sbjct: 70 ELAP--DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQD 126
Query: 543 CVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSN 578
L ++++ +N + L ++ + L N
Sbjct: 127 LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 28/175 (16%)
Query: 335 FSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHG 394
+L +Q + N+N+ S +L +L S+ +S+
Sbjct: 37 QKELSGVQNFNGDNSNIQSLAGMQF------FTNLKELHLSHNQISDLSPL--------- 81
Query: 395 RISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFL 453
K L +L ++ N L ++ P + L L NN+++ L+ + E+
Sbjct: 82 -------KDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILS 134
Query: 454 VSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508
+ NNKL I + LS L+ L L N ++ ++ + L
Sbjct: 135 IRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTGGLTRL--KKVNWIDLTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 28/199 (14%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
I+ L++ NL + + + L + N SN L + + +
Sbjct: 9 INQVFPDPGLANAVKQNLGKQSV--TDLVS-QKELSGVQNFNGDNSNIQSL--AGMQFFT 63
Query: 85 KLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDL 143
L L LS ++ + +LTKL L + L + L + L L
Sbjct: 64 NLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKNLNGIPSACL----SRLFL 113
Query: 144 SGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS---LSDFSGEI 200
++ D + L NL +L + N L + S L LDL +++ G
Sbjct: 114 DNNELRD--TDSLIHLKNLEILSIRNN-KLKSIVMLGFLSK-LEVLDLHGNEITNTGG-- 167
Query: 201 PYSIGNLLFLETVDITYCN 219
+ L + +D+T
Sbjct: 168 ---LTRLKKVNWIDLTGQK 183
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 62/220 (28%)
Query: 402 KGWKSLIDLDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLS 460
G + + +L +T + + ++ + N+ IQ L+
Sbjct: 16 PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ------------------SLA 57
Query: 461 GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENAS 520
G + ++LK L LSHN +S + P L + T +L L + N L
Sbjct: 58 G-----MQFFTNLKELHLSHNQIS-DLSP-LKDLT-KLEELSVNRNRL-----------K 98
Query: 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
N+ L + + NN + DT L L L+IL +R+N+
Sbjct: 99 NLNGIPS----------------ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKL 140
Query: 581 YGPLCKSITTFS-FQALRIIDLSRNEFKDFLPRRNFTSME 619
KSI L ++DL NE + +
Sbjct: 141 -----KSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVN 175
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 1e-08
Identities = 46/338 (13%), Positives = 84/338 (24%), Gaps = 55/338 (16%)
Query: 184 SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243
S L ++ E + ++ + G L + S
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286
Query: 244 LTGQLPHHVSGLLYLTNLD---LFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQ 300
+ ++L +L L Q S L ++
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA 346
Query: 301 SPNSLEEVHLEKNQI--------HGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL 352
+ L L + L ++ L L L
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406
Query: 353 SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDL 412
F++ +D + S S + L L
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV------------------LHL 448
Query: 413 SNNFLTHIA-LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLS 471
++ LT + L + LDL +N+++ +PP + +L
Sbjct: 449 AHKDLTVLCHLEQLLLVTHLDLSHNRLR----------------------ALPPALAALR 486
Query: 472 SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509
L+ L S N L + + N +L L L NN L+
Sbjct: 487 CLEVLQASDNALE-NVDG-VANL-PRLQELLLCNNRLQ 521
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-07
Identities = 51/311 (16%), Positives = 103/311 (33%), Gaps = 31/311 (9%)
Query: 311 EKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLL 370
+ + P ++ GT+ ++++ N S ++ L
Sbjct: 255 ACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLP 314
Query: 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI--ALHPWKNI 428
+ +F K DS + L +LS T + L K +
Sbjct: 315 QHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKEL 374
Query: 429 RTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN----NLS 484
+ L+ N +I++ + + L L Y +L ++ + ++ +
Sbjct: 375 QELEPENKWCLLTIILLMRALDPLLYEKETLQ-----YFSTLKAVDPMRAAYLDDLRSKF 429
Query: 485 GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544
L + LHL + L H E + DL+ N+ +LP +LA
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALR 486
Query: 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFS-------FQALR 597
LEV+ +N + + + +LP L+ L+L +NR + + L
Sbjct: 487 CLEVLQASDNALENVDG--VANLPRLQELLLCNNR--------LQQSAAIQPLVSCPRLV 536
Query: 598 IIDLSRNEFKD 608
+++L N
Sbjct: 537 LLNLQGNSLCQ 547
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 53/341 (15%), Positives = 99/341 (29%), Gaps = 45/341 (13%)
Query: 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSG 145
H+ L++ + S + L L+ + + N S + DL
Sbjct: 247 CVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPA 306
Query: 146 TRIQGNFPDQ----IFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL--SDFSGE 199
+ P I+ + + + + L +LS+ S
Sbjct: 307 ASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQS 366
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
S L LE + + + + L E L + L P + L L
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426
Query: 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTI 319
+ L N + ++LA LT + + + + L N++ +
Sbjct: 427 SKFLLEN------SVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-AL 478
Query: 320 PSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNV 379
P +L + L+ L+ L S+N L + N LP L +L N +
Sbjct: 479 PPAL------------AALRCLEVLQASDNALENVDGVAN------LPRLQELLLCNNRL 520
Query: 380 SEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI 420
+ + L+ L+L N L
Sbjct: 521 QQSAAIQPLVSC-------------PRLVLLNLQGNSLCQE 548
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 7e-07
Identities = 41/269 (15%), Positives = 72/269 (26%), Gaps = 30/269 (11%)
Query: 122 NLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN 181
L + S + + L R + + L L T +
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEK-STVLQSELE 369
Query: 182 WSSPLRELDLSLSDFSGEI---PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEIL 238
L+EL+ I ++ LL+ + + P L
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429
Query: 239 FASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG 298
N + V L L L + L L + ++L+ N+L
Sbjct: 430 LLENSVLKMEYADV------RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRALPPA 481
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
+ LE + N + D + L LQ L L NN L +
Sbjct: 482 LAALRCLEVLQASDNAL--------------ENVDGVANLPRLQELLLCNNRLQQSAAIQ 527
Query: 359 NIDIKYSLPSLLKLSFSNCNVSEFPSFLR 387
+ S P L+ L+ ++ +
Sbjct: 528 PL---VSCPRLVLLNLQGNSLCQEEGIQE 553
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFT-LPSL 282
IP T L S L GL LT L+L N LQ + + +F L L
Sbjct: 33 IPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTEL 85
Query: 283 VSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNL 341
++ LA N+L P+ F L++++L NQ+ ++PS + F +L L
Sbjct: 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV-----------FDRLTKL 133
Query: 342 QFLDLSNNNLLS 353
+ L L+ N L S
Sbjct: 134 KELRLNTNQLQS 145
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 14/139 (10%)
Query: 410 LDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQI 463
LDL + L + + L+L N++Q + ++NN+L+ +
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98
Query: 464 PPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTFENAS 520
P + L+ L L L N L ++P G F T+L L L N L+ F+ +
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLK-SLPS--GVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155
Query: 521 NIQSFDLNCNKFEGSLPRS 539
N+Q+ L+ N+ + S+P
Sbjct: 156 NLQTLSLSTNQLQ-SVPHG 173
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 27/171 (15%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
P TE + + L+ L+ L +L+L +N L T+ + + T+L TL L N
Sbjct: 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLAN 92
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL-AKCVKLEVVNVGNNMINDTFPCWL 564
N L F++ + + L N+ + SLP + + KL+ + + N L
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTN--------QL 143
Query: 565 GSLP--------LLKILILRSNRFYGPLCKSITTFSF---QALRIIDLSRN 604
S+P L+ L L +N+ +S+ +F L+ I L N
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQL-----QSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 38 QSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVL 96
+ L+L + +S F L +LT+LN ++ L L++L LGL+ L
Sbjct: 38 EKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 97 T-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKP--F-SLLNLSSTMTDLDLSGTRIQGNF 152
+ FD +LT+L L+LG L + F L L +L L+ ++Q +
Sbjct: 96 ASLPLGVFD----HLTQLDKLYLGGNQLKSLPSGVFDRLTKL----KELRLNTNQLQ-SI 146
Query: 153 PDQIF-LLPNLRVLYLCGN 170
P F L NL+ L L N
Sbjct: 147 PAGAFDKLTNLQTLSLSTN 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 410 LDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQGSILVPP------PSTEVFLVSNNKL 459
L L+NN T + +R ++ NNKI + L+++N+L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNRL 93
Query: 460 SGQIPPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTF 516
+ + L SLK L L N ++ + +F + + L L +N + F
Sbjct: 94 EN-VQHKMFKGLESLKTLMLRSNRIT-CVGN--DSFIGLSSVRLLSLYDNQITTVAPGAF 149
Query: 517 ENASNIQSFDLNCN 530
+ ++ + +L N
Sbjct: 150 DTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 38 QSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLT 97
L L N F + F +L +L +N S + + S + + L+ L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 98 -IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQI 156
++ + F L L L L S ++ + S + LSS + L L +I
Sbjct: 95 NVQHKMFK----GLESLKTLMLRSNRITCVGNDSFIGLSS-VRLLSLYDNQIT-TVAPGA 148
Query: 157 F-LLPNLRVLYLCGN 170
F L +L L L N
Sbjct: 149 FDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPS 281
IP T E+ +N T + L L ++ N + + F
Sbjct: 30 IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
+ + L N+L F+ SL+ + L N+I + + D F L +
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGN-----------DSFIGLSS 130
Query: 341 LQFLDLSNNNLLS 353
++ L L +N + +
Sbjct: 131 VRLLSLYDNQITT 143
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 9e-07
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 230 NLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLFT-LPSLVSVNL 287
L + +I F++N +T + G + + L N L+ V +F L SL ++ L
Sbjct: 55 KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLML 112
Query: 288 AWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDL 346
N++T D F +S+ + L NQI T+ F L +L L+L
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA-----------FDTLHSLSTLNL 160
Query: 347 SNN 349
N
Sbjct: 161 LAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYIC--SLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITL 501
P T ++NN+ + + L L+ ++ S+N ++ I G F + + +
Sbjct: 31 PQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEI 86
Query: 502 HLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPR-SLAKCVKLEVVNVGNNMI---- 556
L +N LE H F+ ++++ L N+ + S + ++++ +N I
Sbjct: 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 557 NDTFPCWLGSLPLLKILILRSN 578
F +L L L L +N
Sbjct: 146 PGAF----DTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 30/172 (17%), Positives = 56/172 (32%), Gaps = 41/172 (23%)
Query: 272 VPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGT 329
+P + + L N+ T F+ L +++ N+I I F+
Sbjct: 26 IPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFE---- 78
Query: 330 IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFP--SFLR 387
+ + L++N L + + L SL L + ++ SF
Sbjct: 79 -------GASGVNEILLTSNRLENVQHK----MFKGLESLKTLMLRSNRITCVGNDSF-- 125
Query: 388 NSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNN 436
G S+ L L +N +T + A ++ TL+L N
Sbjct: 126 --------------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 5e-08
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 456 NNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIH 513
+ ++ +L L + + + + +L L + + L +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLR-FVA 72
Query: 514 -DTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN-DTFPCWL 564
D F + +L+ N E SL + + L+ + + N ++ WL
Sbjct: 73 PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWL 124
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 19/107 (17%)
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEK 391
+NL L + N L ++ L L L+ +
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLR---GLGELRNLTIVKSGLR----------- 69
Query: 392 IHGRISKHDSKGWKSLIDLDLSNNFLTHIALHP--WKNIRTLDLRNN 436
++ L L+LS N L ++ +++ L L N
Sbjct: 70 ---FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 7e-04
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 29/122 (23%)
Query: 22 RGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEIS 81
G +D L +L L + L +
Sbjct: 18 DGALDSLHHLPGAENLTELYIENQQHL-QHLELR------------DLRG---------- 54
Query: 82 HLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140
L +L +L + + + F +LS L+L L + ++ LS
Sbjct: 55 -LGELRNLTIVKSGLRFVAPDAF----HFTPRLSRLNLSFNALESLSWKTVQGLSLQELV 109
Query: 141 LD 142
L
Sbjct: 110 LS 111
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 59/377 (15%), Positives = 121/377 (32%), Gaps = 26/377 (6%)
Query: 12 LDLHGSCSWLRGTIDDNSTLFR-LSHLQSLNLA--FNNFLGSRISPEFGRLKELTYLNPS 68
LDL + S + L SLN++ + S + R L L +
Sbjct: 161 LDLRE-SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219
Query: 69 FSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKL-SLLHL-GSTNLSLI 126
+ + + + +L LG + + L+ L+ L L G +
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279
Query: 127 KPFSLLNLSSTMTDLDLSGTRIQGNFPDQIF-LLPNLRVLYLCGNIHLTGYLPKCNWSSP 185
++ ++ S +T L+LS +Q ++ P L+ L++ I G +
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
LREL + S+ P L +V C + S+ ++ A ++ + +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAA-LITIARNRP 397
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT--GPIDGFQSPN 303
+ + L L + + L ++L+ LT
Sbjct: 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAK 456
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
+E + + + C +L+ L++ + F +
Sbjct: 457 KMEMLSVAFAGDSDLGMHHVLSGC-----------DSLRKLEIRDCP---FGDKALLANA 502
Query: 364 YSLPSLLKLSFSNCNVS 380
L ++ L S+C+VS
Sbjct: 503 SKLETMRSLWMSSCSVS 519
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 72/547 (13%), Positives = 162/547 (29%), Gaps = 86/547 (15%)
Query: 75 LVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNL 134
+ I K+ + L + + +L+ G ++ +
Sbjct: 57 SPATVIRRFPKVRSVELKGK-------------PHFADFNLVPDGWGGYVYPWIEAMSSS 103
Query: 135 SSTMTDLDLSGTRIQGNFPDQIFLL-----PNLRVLYLCGNIHLTGY-----LPKCNWSS 184
+ + ++ L + D L N +VL L + C
Sbjct: 104 YTWLEEIRLKRMVV----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC---R 156
Query: 185 PLRELDLSLSDFSGEIPYSIGNLL----FLETVDITYCNFM---GSIPTSTGNLSKATEI 237
L+ELDL SD + + + L +++I+ ++ +
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216
Query: 238 LFASNHLTGQLPHHVSGLLYLTNLDLFG------NSLQGKVPSWLFTLPSLVSVNLAWNK 291
+L + L L G + + L L ++ W+
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276
Query: 292 LTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN 350
+ + + + L ++L + L +L + LQ L + +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATV---QSYDLVKL--------LCQCPKLQRLWVLDY- 324
Query: 351 LLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
+G + + L +L + +E+ +S L +
Sbjct: 325 ---IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG----CPKLESV 377
Query: 411 DLSNNFLTHIAL----HPWKNIRTLDLRNNKIQGSILVPPPSTEV---FLVSNNK----- 458
+T+ AL N+ L + + + ++ +V + K
Sbjct: 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL 437
Query: 459 -LSGQI----PPYICS-LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN-NSLEGH 511
LSG + YI + ++ LS++ S + + L L +++ +
Sbjct: 438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497
Query: 512 IHDTFENASNIQSFDL-NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570
+ ++S + +C+ G+ K KL V + D+ P S P+
Sbjct: 498 LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPE---SCPVE 554
Query: 571 KILILRS 577
++ I R+
Sbjct: 555 RVFIYRT 561
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 65/436 (14%), Positives = 127/436 (29%), Gaps = 75/436 (17%)
Query: 33 RLSHLQSLNLAFNNFLGSR-ISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSK----LT 87
+ + L L+ + ++ + L L+ S+ + +SH L
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187
Query: 88 HLGLSCRVLTIEQRTFDLLASNLTKLSLLHL-GSTNLSLIKPFSLLNLSSTMTDLDLSGT 146
L +SC + + L + L L L + L + +LL + + +L G
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA--TLLQRAPQLEELGTGGY 245
Query: 147 RIQGNFPDQIFL------LPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGE- 199
+ L LR L + + S L L+LS +
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305
Query: 200 IPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259
+ + L+ + + G L S L
Sbjct: 306 LVKLLCQCPKLQRLWVLDYI------EDAG------------------LEVLASTCKDLR 341
Query: 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQ--SPNSLEEV-----HLEK 312
L +F + P+ T LVSV++ KL + + + +L + ++ +
Sbjct: 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401
Query: 313 NQIHGTIPSSLFQLCGTIRFDQFSKL----KNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
++ P + L F + K+L+ L LS T I
Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL----LTDKVFEYIGTYAKK 457
Query: 369 LLKLSFSNCNVSE--FPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA----L 422
+ LS + S+ L SL L++ + A
Sbjct: 458 MEMLSVAFAGDSDLGMHHVLSGC---------------DSLRKLEIRDCPFGDKALLANA 502
Query: 423 HPWKNIRTLDLRNNKI 438
+ +R+L + + +
Sbjct: 503 SKLETMRSLWMSSCSV 518
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 37/321 (11%), Positives = 100/321 (31%), Gaps = 33/321 (10%)
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
+ + P+++ + +R + + +L + + + S
Sbjct: 47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106
Query: 369 LLKLSFSNCNVSE---------FPSF----LRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415
L ++ V++ F +F L + E + ++L +LDL +
Sbjct: 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166
Query: 416 FLTHIALHP-------WKNIRTLDLRN--NKIQGSILVP----PPSTEVFLVSNNKLSGQ 462
+ ++ H + ++ +L++ +++ S L P+ + ++ +
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226
Query: 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDT-----FE 517
+ + L+ L G L+ S +
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286
Query: 518 NASNIQSFDL-NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL- 575
S + + +L L + L +C KL+ + V + + + + L+ L +
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346
Query: 576 RSNRFYGPLCKSITTFSFQAL 596
S F ++T ++
Sbjct: 347 PSEPFVMEPNVALTEQGLVSV 367
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 32/277 (11%), Positives = 78/277 (28%), Gaps = 53/277 (19%)
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR 395
+ +NL+ LDL +++ + + SL+ L+ S + ++
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL-----------ASEVSFS 201
Query: 396 ISKHDSKGWKSLIDLDLSNNF----LTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEV 451
+ +L L L+ L + + L
Sbjct: 202 ALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA-PQLEELGTGG---------------Y 245
Query: 452 FLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL--E 509
+ + + L+ LS + + + P + + ++L TL+L ++
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL-PAVYSVCSRLTTLNLSYATVQSY 304
Query: 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW------ 563
+ +Q + + L + C L + V + P
Sbjct: 305 DLVK-LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363
Query: 564 ----LGSLPLLKILILRSNRFYGPLCKSITTFSFQAL 596
P L+ ++ C+ +T + +
Sbjct: 364 LVSVSMGCPKLESVLYF--------CRQMTNAALITI 392
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 5e-08
Identities = 44/261 (16%), Positives = 80/261 (30%), Gaps = 69/261 (26%)
Query: 258 LTNLDLFGNSLQGKVPSWLFT-LPSLVSVNLAWN-KLTG-PIDGFQSPNSLEEVHLEKNQ 314
L L L+ +PS F+ LP++ + ++ + L F + + + + + +
Sbjct: 33 TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSF 374
I D +L L+FL + N L F + YS L
Sbjct: 92 NLTYIDP-----------DALKELPLLKFLGIFNTGLKMFPDLTKV---YSTDIFFILEI 137
Query: 375 SNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNI----RT 430
++ N ++T I ++ ++ + T
Sbjct: 138 TD-------------------------------------NPYMTSIPVNAFQGLCNETLT 160
Query: 431 LDLRNNKI---QGSILVPPPSTEVFLVSNNKLSGQIPPYICS--LSSLKYLSLSHNNLSG 485
L L NN QG V+L N L+ I S L +S +++
Sbjct: 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT- 218
Query: 486 TIPPCLGNFTTQLITLHLKNN 506
+P L L +N
Sbjct: 219 ALPS--KGL-EHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 12/143 (8%)
Query: 34 LSHLQSLNLAFNNFLGSRISPE-FGRLKELTYLNPSFSNFGGLVPSEI-SHLSKLTHLGL 91
Q+L L + I F L ++ + S + S +LSK+TH+ +
Sbjct: 30 PPSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87
Query: 92 S-CRVLT-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ 149
R LT I+ L L L + +T L + + + + L+++
Sbjct: 88 RNTRNLTYIDPDALK----ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143
Query: 150 GNFPDQIF--LLPNLRVLYLCGN 170
+ P F L L L N
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNN 166
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 34/215 (15%)
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR 395
S + Q L L +L + S +LP++ ++ ++ + +
Sbjct: 28 SLPPSTQTLKLIETHLRTIPS----HAFSNLPNISRI------------YVSIDVTLQ-Q 70
Query: 396 ISKHDSKGWKSLIDLDLSNN-FLTHI---ALHPWKNIRTLDLRNNKIQ----GSILVPPP 447
+ H + +++ N LT+I AL ++ L + N ++ + +
Sbjct: 71 LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130
Query: 448 STEVFLVSNNKLSGQIPPYICS--LSSLKYLSLSHNNLSGTIPPCLGNFT-TQLITLHLK 504
+ +++N IP + L L +N + ++ F T+L ++L
Sbjct: 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG--YAFNGTKLDAVYLN 187
Query: 505 NNSLEGHIH-DTFENA-SNIQSFDLNCNKFEGSLP 537
N I D F S D++ +LP
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 41/232 (17%), Positives = 71/232 (30%), Gaps = 47/232 (20%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFL-LPNLRVLY 166
S L L T+L I + NL + ++ + +S F L + +
Sbjct: 28 SLPPSTQTLKLIETHLRTIPSHAFSNLPN-ISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86
Query: 167 LCGNIHLT-------GYLPKCNWSSPLRELDLS---LSDFSGEIPYSIGNLLFLETVDIT 216
+ +LT LP L+ L + L F + + ++IT
Sbjct: 87 IRNTRNLTYIDPDALKELPL------LKFLGIFNTGLKMFPDLT--KVYSTDIFFILEIT 138
Query: 217 YCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWL 276
+M SIP + A L + L L+ N V +
Sbjct: 139 DNPYMTSIPVN------------AFQGLCNETLT----------LKLYNNGFT-SVQGYA 175
Query: 277 FTLPSLVSVNLAWNKL--TGPIDGFQS-PNSLEEVHLEKNQIHGTIPSSLFQ 325
F L +V L NK D F + + + + + +PS +
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLE 226
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 58/186 (31%)
Query: 407 LIDLDLSNNFLTHI--ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIP 464
++L + + L K + L L N I+ K+S
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE------------------KISS--- 65
Query: 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524
+ + +L+ LSL N + I L L L + N +
Sbjct: 66 --LSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIA--------------- 106
Query: 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGP 583
G + K V L V+ + NN I + L +L L+ L+L N P
Sbjct: 107 ------SLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN----P 151
Query: 584 LCKSIT 589
L
Sbjct: 152 LYNDYK 157
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 248 LPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQS-PNSLE 306
+ +S L +L L N+++ K+ S L + +L ++L N + I+ + ++LE
Sbjct: 40 MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTLE 96
Query: 307 EVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSL 366
E+ + NQI KL NL+ L +SNN + ++ ID +L
Sbjct: 97 ELWISYNQIA--------------SLSGIEKLVNLRVLYMSNNKITNWGE---IDKLAAL 139
Query: 367 PSLLKLSFSN 376
L L +
Sbjct: 140 DKLEDLLLAG 149
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 49/313 (15%), Positives = 97/313 (30%), Gaps = 79/313 (25%)
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDI----KYSLPSLLKLSFSNCNVSE-----FPSFLRNS 389
+ LDLS NNL S +++ + S+ L+ S ++ L
Sbjct: 22 HGVTSLDLSLNNL---YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78
Query: 390 EKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL--------HPWKNIRTLDLRNNKIQ-- 439
++ L+LS NFL++ + I LDL N
Sbjct: 79 PA--------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124
Query: 440 -----GSILVPPPSTEVFL-VSNNKLSGQIPPYICSL-----SSLKYLSLSHNNLSGT-- 486
P++ L + N L + + + +++ L+L NNL+
Sbjct: 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184
Query: 487 --IPPCLGNFTTQLITLHLKNNSL--EG--HIHDTFE-NASNIQSFDLNCNKFEGS---- 535
+ L + + +L L N L + + F +++ S +L N G
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244
Query: 536 LPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQA 595
L L+ V + +++ + +L + Q
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL----GAAFPNI---------------QK 285
Query: 596 LRIIDLSRNEFKD 608
+ ++D + E
Sbjct: 286 IILVDKNGKEIHP 298
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 46/304 (15%), Positives = 100/304 (32%), Gaps = 69/304 (22%)
Query: 300 QSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGN 359
P+ + + L N ++ S +L + ++ L+LS N+L +
Sbjct: 19 SIPHGVTSLDLSLNNLY---SISTVELIQAFA----NTPASVTSLNLSGNSL---GFKNS 68
Query: 360 IDIKYSLPS----LLKLSFSNCN-----VSEFPSFLRNSEKIHGRISKHDSKGWKSLIDL 410
++ L + + L+ S E L ++ L
Sbjct: 69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPF--------------TITVL 114
Query: 411 DLSNNFLT-----HIA---LHPWKNIRTLDLRNNKIQ-------GSILVPPPST-EVFLV 454
DL N + + +I +L+LR N + IL P+ +
Sbjct: 115 DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174
Query: 455 SNNKLSGQIPPYICSL-----SSLKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKN 505
N L+ + + +S+ L LS N L + + +++L+L
Sbjct: 175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234
Query: 506 NSLEG----HIHDTFENASNIQSFDLNCNKFEG-------SLPRSLAKCVKLEVVNVGNN 554
N L G ++ ++ ++Q+ L+ + + +L + K+ +V+
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
Query: 555 MIND 558
I+
Sbjct: 295 EIHP 298
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 56/350 (16%), Positives = 112/350 (32%), Gaps = 70/350 (20%)
Query: 280 PSLVSVNLAWNKLTGP-----IDGFQSPN-SLEEVHLEKNQIHGTIPSSLFQLCGTIRFD 333
+ S++L+ N L I F + S+ ++L N + + +L +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQILA-- 76
Query: 334 QFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS----LLKLSFSNCNVSEFPSFLRNS 389
+ N+ L+LS N L + + ++ +L + + L + S
Sbjct: 77 --AIPANVTSLNLSGNFL---SYKSSDELVKTLAAIPFTITVLDLGWNDFSS-------- 123
Query: 390 EKIHGRISKHDSKGWKSLIDLDLSNNFLT-----HIA---LHPWKNIRTLDLRNNKIQ-- 439
K + S S+ L+L N L + N+ +L+LR N +
Sbjct: 124 -KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182
Query: 440 -----GSILVPPPST-EVFLVSNNKLSGQIPPYICSL-----SSLKYLSLSHNNLSGTIP 488
L P++ +S N L + + + + + L+L N L G
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242
Query: 489 PCLGNF---TTQLITLHLKNNSLEG-------HIHDTFENASNIQSFDLNCNKFEGSLPR 538
L L T++L + ++ + F N I D N + S
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302
Query: 539 SLAKCVK-----LEVVNVGNNMINDTFPCWLGSLPL-----LKILILRSN 578
++ ++ +V ++ N + L L+ I
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 41/293 (13%), Positives = 95/293 (32%), Gaps = 60/293 (20%)
Query: 257 YLTNLDLFGNSLQGKVPSWLFTL-----PSLVSVNLAWNKLTGP-----IDGFQSPN-SL 305
+T+L+L GNSL K L + ++ S+NL+ N L+ + + ++
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 306 EEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
+ L N S + + ++ L+L N+L + ++
Sbjct: 112 TVLDLGWNDFS---SKSSSEFKQAFS----NLPASITSLNLRGNDL---GIKSSDELIQI 161
Query: 366 LP----SLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA 421
L ++ L+ N++ ++K + S+ LDLS N L +
Sbjct: 162 LAAIPANVNSLNLRGNNLASKNCAE---------LAKFLASIPASVTSLDLSANLLGLKS 212
Query: 422 L--------HPWKNIRTLDLRNNKIQ-------GSILVPPPSTEVFLVSNNKLSGQ---- 462
++ +L+L N + + + + + +
Sbjct: 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272
Query: 463 ---IPPYICSLSSLKYLSLSHNNL--SGTIPPC--LGNFTTQLITLHLKNNSL 508
+ ++ + + + + S +IP + + + L N L
Sbjct: 273 CKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 9e-07
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
P + ++ + +N+++ P SL +LK L L N L +P + + TQL L L
Sbjct: 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554
N L F+ +++ + CNK LPR + + L + + N
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 22/132 (16%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF-TLPSL 282
IPT+ L N +T P L+ L L L N L +P +F +L L
Sbjct: 38 IPTNAQILY------LHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90
Query: 283 VSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNL 341
++L N+LT P F L+E+ + N++ +P +L +L
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG------------IERLTHL 137
Query: 342 QFLDLSNNNLLS 353
L L N L S
Sbjct: 138 THLALDQNQLKS 149
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 410 LDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQGSILVPP------PSTEVFLVSNNKLS 460
L L +N +T + N++ L L +N++ +P V + N+L+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA---LPVGVFDSLTQLTVLDLGTNQLT 101
Query: 461 GQIPPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENA 519
+P + L LK L + N L+ +P + T L L L N L+ H F+
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-HLTHLALDQNQLKSIPHGAFDRL 158
Query: 520 SNIQSFDLNCN 530
S++ L N
Sbjct: 159 SSLTHAYLFGN 169
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF-TLPSL 282
IP T L +N L L LT L L GN LQ +P+ +F L SL
Sbjct: 26 IPAQTTYLD------LETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78
Query: 283 VSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNL 341
+NL+ N+L P F L+E+ L NQ+ ++P +F KL L
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVF-----------DKLTQL 126
Query: 342 QFLDLSNNNLLS 353
+ L L N L S
Sbjct: 127 KDLRLYQNQLKS 138
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 410 LDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILVPPPSTEVFLVSNNKLSGQI 463
LDL N L + ++ L L NK+Q + S +S N+L +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 464 PPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNF--TTQLITLHLKNNSLEGHIHDTFENAS 520
P + L+ LK L+L+ N L ++P G F TQL L L N L+ F+ +
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQ-SLPD--GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 521 NIQSFDLNCN 530
++Q L+ N
Sbjct: 149 SLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
P T + N L L+SL L L N L ++P + N T L L+L
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLP 537
N L+ + F+ + ++ LN N+ + SLP
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLP 116
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 20/231 (8%)
Query: 1 ICDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLK 60
+ +VTG ++ + + F +Q ++L+ + S + +
Sbjct: 59 LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118
Query: 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKLSLLHLG 119
+L L+ + + ++ S L L LS C + + L S+ ++L L+L
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS--EFALQTLLSSCSRLDELNLS 176
Query: 120 S----TNLSLIKPFSLLNLSSTMTDLDLSG--TRIQGNFPDQIFL-LPNLRVLYLCGNIH 172
T + ++ ++S T+T L+LSG +Q + + PNL L L ++
Sbjct: 177 WCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234
Query: 173 LTGYLPKCNWSSP-LRELDLS----LSDFSGEIPYSIGNLLFLETVDITYC 218
L + + L+ L LS + + +G + L+T+ +
Sbjct: 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFGI 282
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 22/128 (17%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF-TLPSL 282
IP TE+ N T +P +S +LT +DL N + + + F + L
Sbjct: 29 IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80
Query: 283 VSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNL 341
+++ L++N+L P F SL + L N I +P F + L L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAF-----------NDLSAL 128
Query: 342 QFLDLSNN 349
L + N
Sbjct: 129 SHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 28/126 (22%), Positives = 43/126 (34%), Gaps = 30/126 (23%)
Query: 410 LDLSNNFLTHI--ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYI 467
L L N T + L +K++ +DL NN+I +
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS----------------------TLSNQS 73
Query: 468 C-SLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTFENASNIQS 524
+++ L L LS+N L IPP F L L L N + F + S +
Sbjct: 74 FSNMTQLLTLILSYNRLR-CIPP--RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Query: 525 FDLNCN 530
+ N
Sbjct: 131 LAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 38 QSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLT 97
L L N F + + E K LT ++ S + L S++++L L LS L
Sbjct: 34 TELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 98 -IEQRTFDLLASNLTKLSLLHLGSTNLSLI 126
I RTFD L L LL L ++S++
Sbjct: 92 CIPPRTFD----GLKSLRLLSLHGNDISVV 117
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 17/127 (13%)
Query: 258 LTNLDLFGNSLQ-GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316
+ L L + GK+ L ++ LT I N L+++ L N++
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANLPKLNKLKKLELSDNRVS 77
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
K NL L+LS N + I+ L +L L N
Sbjct: 78 ------------GGLEVLAEKCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSLDLFN 122
Query: 377 CNVSEFP 383
C V+
Sbjct: 123 CEVTNLN 129
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 37/144 (25%)
Query: 300 QSPNSLEEVHLEKNQI-HGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG 358
++P+ ++E+ L+ ++ G + + + L+FL N L S
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLT------------DEFEELEFLSTINVGLTS----- 56
Query: 359 NIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418
I L L KL S+ VS + ++ +L L+LS N +
Sbjct: 57 -IANLPKLNKLKKLELSDNRVS--------------GGLEVLAEKCPNLTHLNLSGNKIK 101
Query: 419 HIA----LHPWKNIRTLDLRNNKI 438
++ L +N+++LDL N ++
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEV 125
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 230 NLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLF-TLPSLVSVNL 287
L+ T ++ N L LP+ V L L L L N LQ +P +F L +L +NL
Sbjct: 83 ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNL 140
Query: 288 AWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDL 346
A N+L P F +L E+ L NQ+ ++P +F KL L+ L L
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF-----------DKLTQLKDLRL 188
Query: 347 SNNNLLS 353
N L S
Sbjct: 189 YQNQLKS 195
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 48/266 (18%), Positives = 93/266 (34%), Gaps = 70/266 (26%)
Query: 272 VPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR 331
P F + NL +T NS++++ + I ++
Sbjct: 13 FPDDAFA--ETIKANLKKKSVTD-AVTQNELNSIDQIIANNSDIK-SVQG---------- 58
Query: 332 FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEK 391
L N+++L L N L + + +L +L+
Sbjct: 59 ---IQYLPNVRYLALGGNKL------------HDISALKELT------------------ 85
Query: 392 IHGRISKHDSKGWKSLIDLDLSNNFLTHI---ALHPWKNIRTLDLRNNKIQ---GSILVP 445
+L L L+ N L + N++ L L N++Q +
Sbjct: 86 --------------NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 446 PPSTEVFLVSNNKLSGQIPPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504
+ +++N+L +P + L++L L LS+N L ++P + + TQL L L
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLY 189
Query: 505 NNSLEGHIHDTFENASNIQSFDLNCN 530
N L+ F+ +++Q L+ N
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 57/436 (13%), Positives = 123/436 (28%), Gaps = 52/436 (11%)
Query: 34 LSHLQSLNLAFNNFLGSRISPEF-GRLKELTYLN----PSFSNFGGLVPSEISHLSKLTH 88
L L+S++ + R +L L F+ G + S ++H K+
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDG--LLSIVTHCRKIKT 168
Query: 89 LGLS-CRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNL---SSTMTDLDLS 144
L + + + LA + T L +L+ T + I P L + ++ + +
Sbjct: 169 LLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228
Query: 145 GTRI--QGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPY 202
I F L L +I + + L L LS + +P
Sbjct: 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPI 287
Query: 203 SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQ-LPHHVSGLLYLTNL 261
+ +D+ Y + E+L N + + L L L
Sbjct: 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347
Query: 262 DLFGNSLQGKVPSWLFTL------------PSLVSVNLAWNKLT--GPIDGFQSPNSLEE 307
+ + + + + L + + + +T +L +
Sbjct: 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407
Query: 308 V-HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSL 366
+ ++ L ++ K L+ T G I
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSL----LIGCKKLRRFAFYLRQGG-LTDLGLSYIGQYS 462
Query: 367 PSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT----HIAL 422
P++ + S+ S+G +L L++ + A+
Sbjct: 463 PNVRWMLLGYVGESD-------------EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509
Query: 423 HPWKNIRTLDLRNNKI 438
++R L ++ +
Sbjct: 510 TKLPSLRYLWVQGYRA 525
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 69/568 (12%), Positives = 148/568 (26%), Gaps = 102/568 (17%)
Query: 51 RISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSK--LTHLGLSCRVLTIEQRTFDLLAS 108
R+S F L+ L + L+P +T + + R L ++
Sbjct: 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL----KSVHFRRM 122
Query: 109 NLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL- 167
++ L L L ++ L L I + ++ L +
Sbjct: 123 IVSDLDLDRLAKARADDLE---TLKLDKCSGFTTDGLLSIVTH-------CRKIKTLLME 172
Query: 168 -CGNIHLTG----YLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLL----FLETVDITYC 218
G L + N + L L+ +++F+ P + + L +V +
Sbjct: 173 ESSFSEKDGKWLHELAQHN--TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230
Query: 219 NFM--GSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWL 276
+ + NL + + + ++ L L L +P
Sbjct: 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE-MPILF 289
Query: 277 FTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFS 336
+ ++L + L L
Sbjct: 290 PFAAQIRKLDLLYALL--------------------------ETEDHCTL--------IQ 315
Query: 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRI 396
K NL+ L+ N G + L +L + + E G +
Sbjct: 316 KCPNLEVLETRN----VIGDRGLEVLAQYCKQLKRLRIERG------ADEQGMEDEEGLV 365
Query: 397 S----KHDSKGWKSLIDLDLSNNFLTHIAL----HPWKNIRTLDLRNNKIQGSILVPPPS 448
S ++G + L + + + +T+ +L KN+ L + I P
Sbjct: 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 449 TEVFLVSNN--------------KLSGQIPPYICSL-SSLKYLSLSHNNLSGTIPPCLGN 493
V + L+ YI +++++ L + S
Sbjct: 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485
Query: 494 FTTQLITLHLKNNSL-EGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK---CVKLEVV 549
L L ++ E I +++ + + + + +E++
Sbjct: 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545
Query: 550 NVGNNMINDTFPCWLGSLPLLKILILRS 577
+ IL S
Sbjct: 546 PSRRVPEVNQQGEIREMEHPAHILAYYS 573
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 17/129 (13%)
Query: 258 LTNLDLFGNSLQ-GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316
+ L L GK+ +L ++L L + L+++ L +N+I
Sbjct: 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIF 84
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376
G + KL NL L+LS N L ++ L L L N
Sbjct: 85 GGLDML------------AEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLDLFN 129
Query: 377 CNVSEFPSF 385
C V+ +
Sbjct: 130 CEVTNLNDY 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 259 TNLDLFGNSLQGKVPSWLF-TLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIH 316
T L L N L LF LP LV + L N+LTG + F+ + ++E+ L +N+I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 317 GTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353
I + +F L L+ L+L +N +
Sbjct: 92 -EISNKMF-----------LGLHQLKTLNLYDNQISC 116
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 32/128 (25%)
Query: 410 LDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPP 465
L L++N L I ++ L+L+ N++ G I P
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG----------------------IEP 71
Query: 466 YIC-SLSSLKYLSLSHNNLSGTIPPCLGNFT--TQLITLHLKNNSLEGHIHDTFENASNI 522
S ++ L L N + I F QL TL+L +N + + +FE+ +++
Sbjct: 72 NAFEGASHIQELQLGENKIK-EISN--KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128
Query: 523 QSFDLNCN 530
S +L N
Sbjct: 129 TSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 22/129 (17%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLF-TLPS 281
IP T TE+L N L + L +L L+L N L + F
Sbjct: 27 IPLHT------TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
+ + L NK+ F + L+ ++L NQI + F L +
Sbjct: 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSF-----------EHLNS 127
Query: 341 LQFLDLSNN 349
L L+L++N
Sbjct: 128 LTSLNLASN 136
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 405 KSLIDLDLSNNFLTHIA--LHPWKNIRTLDLRNNKIQG-SILVPPPSTEVFLVSNNKLSG 461
+LDL + I +D +N+I+ + LV+NN++
Sbjct: 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICR 78
Query: 462 QIPPYICSLSSLKYLSLSHNNLS--GTIPPCLGNFTTQLITLHLKNN 506
+L L L L++N+L G + P L + L L + N
Sbjct: 79 IGEGLDQALPDLTELILTNNSLVELGDLDP-LASL-KSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 29/159 (18%), Positives = 60/159 (37%), Gaps = 32/159 (20%)
Query: 296 IDGFQSPNSLEEVHLEKNQIHGT--IPSSLFQL-------CGTIRFDQFSKLKNLQFLDL 346
+ + E+ L +I + ++L Q + D F L+ L+ L +
Sbjct: 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLV 71
Query: 347 SNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKS 406
+NN + + +LP L +L +N ++ E L + + + KS
Sbjct: 72 NNNRI----CRIGEGLDQALPDLTELILTNNSLVE----LGDLDPL---------ASLKS 114
Query: 407 LIDLDLSNNFLTHIA------LHPWKNIRTLDLRNNKIQ 439
L L + N +T+ ++ +R LD + K++
Sbjct: 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 224 IPTSTGNLSKATEILFASNHLTGQLPHHV-SGLLYLTNLDLFGNSLQGKVPSWLF-TLPS 281
IP+S L SN L LPH V L LT L L N +Q +P +F L
Sbjct: 26 IPSSATRLE------LESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77
Query: 282 LVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKN 340
L + L NKL P F L+E+ L+ NQ+ ++P +F +L +
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIF-----------DRLTS 125
Query: 341 LQFLDLSNN 349
LQ + L N
Sbjct: 126 LQKIWLHTN 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 683 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.91 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.91 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.9 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.89 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.84 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.84 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.84 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.84 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.83 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.82 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.82 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.82 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.81 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.76 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.76 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.71 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.69 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.63 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.63 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.61 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.6 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.6 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.6 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.58 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.58 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.57 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.57 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.55 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.55 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.47 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.44 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.43 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.41 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.41 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.39 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.36 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.36 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.22 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.13 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.13 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.05 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.64 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.57 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.57 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.47 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.29 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.91 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.54 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.53 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.55 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.32 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-65 Score=583.27 Aligned_cols=579 Identities=27% Similarity=0.417 Sum_probs=493.6
Q ss_pred CCCCCCcEEEEECCCCCCCccee---ecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCc
Q 043978 2 CDNVTGNVIGLDLHGSCSWLRGT---IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPS 78 (683)
Q Consensus 2 c~~~~~~v~~L~L~~~~~~~~~~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~ 78 (683)
|+ +++|++|||++ ..+.|. +++ ++..+++|+.++++.+.+.. .++.|+++++|++|+|++|.+.+.+|.
T Consensus 47 C~--~~~v~~L~L~~--~~l~g~~~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (768)
T 3rgz_A 47 CR--DDKVTSIDLSS--KPLNVGFSAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTT 118 (768)
T ss_dssp EE--TTEEEEEECTT--SCCCEEHHHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGG
T ss_pred EC--CCcEEEEECCC--CCcCCccCccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCC
Confidence 55 68999999999 888887 776 88899999999999887632 457899999999999999999988887
Q ss_pred --cCcCCCCCCEEeCCCCcCccccCCHHHH-HccCCCCCEEEcCCccCCcCChhh---hhcCcCCccEEEcCCCcCCCCC
Q 043978 79 --EISHLSKLTHLGLSCRVLTIEQRTFDLL-ASNLTKLSLLHLGSTNLSLIKPFS---LLNLSSTMTDLDLSGTRIQGNF 152 (683)
Q Consensus 79 --~~~~l~~L~~L~ls~n~~~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~~L~~L~l~~n~i~~~~ 152 (683)
.++++++|++|++++|.+.. ..|.. +.++++|++|++++|.+++..+.. +.++ ++|++|++++|.+.+..
T Consensus 119 ~~~l~~l~~L~~L~Ls~n~l~~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 194 (768)
T 3rgz_A 119 LTSLGSCSGLKFLNVSSNTLDF---PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLAISGNKISGDV 194 (768)
T ss_dssp GGGGGGCTTCCEEECCSSEEEC---CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TTCCEEECCSSEEESCC
T ss_pred hHHHhCCCCCCEEECcCCccCC---cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC-CCCCEEECCCCcccccC
Confidence 89999999999999998762 22322 378999999999999999887776 7788 99999999999998765
Q ss_pred CccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCC
Q 043978 153 PDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLS 232 (683)
Q Consensus 153 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 232 (683)
+ +..+++|++|++++| .+.+.++.+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|.. .++
T Consensus 195 ~--~~~l~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~ 269 (768)
T 3rgz_A 195 D--VSRCVNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269 (768)
T ss_dssp B--CTTCTTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCT
T ss_pred C--cccCCcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccC
Confidence 4 388999999999999 77777777899999999999999999889999999999999999999998877765 889
Q ss_pred CCCeeeccCccccccCCccccCC-CCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCC-C-CCCCCCCcEEE
Q 043978 233 KATEILFASNHLTGQLPHHVSGL-LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-G-FQSPNSLEEVH 309 (683)
Q Consensus 233 ~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~-~~~~~~L~~L~ 309 (683)
+|++|++++|.+.+.+|..+... ++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++ . +..+++|++|+
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp TCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 99999999999998888888775 999999999999999999999999999999999999985443 3 66899999999
Q ss_pred CCCCcCcccCCccchhccCcccccccCCCC-CCCEEeCCCCCcccccccccccccc--CCCCccEEEcccCCCC-CcChh
Q 043978 310 LEKNQIHGTIPSSLFQLCGTIRFDQFSKLK-NLQFLDLSNNNLLSFTSSGNIDIKY--SLPSLLKLSFSNCNVS-EFPSF 385 (683)
Q Consensus 310 L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~~~~~~--~~~~L~~L~l~~~~l~-~~p~~ 385 (683)
+++|.+.+.+|.. +..++ +|+.|++++|.+..... .... .+++|++|++++|.+. .+|..
T Consensus 350 Ls~n~l~~~~p~~------------l~~l~~~L~~L~Ls~N~l~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 413 (768)
T 3rgz_A 350 LSFNEFSGELPES------------LTNLSASLLTLDLSSNNFSGPIL----PNLCQNPKNTLQELYLQNNGFTGKIPPT 413 (768)
T ss_dssp CCSSEEEECCCTT------------HHHHTTTCSEEECCSSEEEEECC----TTTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred CcCCccCccccHH------------HHhhhcCCcEEEccCCCcCCCcC----hhhhhcccCCccEEECCCCccccccCHH
Confidence 9999999888873 44455 89999999998653211 1122 3778999999999776 44443
Q ss_pred hhhccccccccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCCC---CCCCCcEEEccCCcc
Q 043978 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSILV---PPPSTEVFLVSNNKL 459 (683)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i 459 (683)
+ ..+++|+.|++++|.+++..+ ..+++|+.|++++|.+++..+. .+++|++|++++|.+
T Consensus 414 l---------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 414 L---------------SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp G---------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred H---------------hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 2 677889999999998886543 3678899999999998876554 578899999999999
Q ss_pred cCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchh
Q 043978 460 SGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRS 539 (683)
Q Consensus 460 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 539 (683)
.+.+|..+..+++|++|++++|++.+.+|..+..+. +|++|++++|++.+..|..+..+++|+.|++++|++++.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChH
Confidence 988899999999999999999999888888888766 8999999999999888889999999999999999888666654
Q ss_pred h----------------------------------------------------------------------hcCCCCcEE
Q 043978 540 L----------------------------------------------------------------------AKCVKLEVV 549 (683)
Q Consensus 540 l----------------------------------------------------------------------~~l~~L~~L 549 (683)
+ ..+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3 335678999
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccc
Q 043978 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQAT 629 (683)
Q Consensus 550 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n 629 (683)
++++|++++.+|..++.+++|+.|+|++|++++.+| ..+..+++|++||+++|+++|.+| ..|+.++.|+.+++++|
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP--DEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNN 714 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSS
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC--hHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999998887 456889999999999999999999 57899999999999999
Q ss_pred eee
Q 043978 630 RLQ 632 (683)
Q Consensus 630 ~~~ 632 (683)
+++
T Consensus 715 ~l~ 717 (768)
T 3rgz_A 715 NLS 717 (768)
T ss_dssp EEE
T ss_pred ccc
Confidence 885
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-63 Score=565.72 Aligned_cols=576 Identities=28% Similarity=0.368 Sum_probs=357.6
Q ss_pred cEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCccc-CCCCCCCEEeCCCCCCCCCCCcc---CcCC
Q 043978 8 NVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEF-GRLKELTYLNPSFSNFGGLVPSE---ISHL 83 (683)
Q Consensus 8 ~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~-~~l~~L~~L~Ls~~~~~~~~~~~---~~~l 83 (683)
++++|||++ +.+.+.++....+..+++|++|+|++|.+... .+..+ .++++|++|++++|.+++..|.. +.++
T Consensus 101 ~L~~L~Ls~--n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 101 SLTSLDLSR--NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp TCCEEECCS--SEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCEEECCC--CcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 455555555 55554444333455555555555555554433 23222 45555555555555555554444 4555
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCc
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLR 163 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 163 (683)
++|++|++++|.+.... + +..+++|++|++++|.+.+..+. +..+ ++|++|++++|.+++..|..+..+++|+
T Consensus 178 ~~L~~L~Ls~n~l~~~~---~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 178 GELKHLAISGNKISGDV---D--VSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp TTCCEEECCSSEEESCC---B--CTTCTTCCEEECCSSCCCSCCCB-CTTC-CSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred CCCCEEECCCCcccccC---C--cccCCcCCEEECcCCcCCCCCcc-cccC-CCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 55555555555544211 1 14555566666665555554443 5555 5566666666655555555555566666
Q ss_pred EEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCC-CCCCEEEccCCcccccCCCCCCCCCCCCeeeccCc
Q 043978 164 VLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNL-LFLETVDITYCNFMGSIPTSTGNLSKATEILFASN 242 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 242 (683)
+|++++| .+.+..+.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 251 ~L~Ls~n-~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 251 LLNISSN-QFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp EEECCSS-CCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCC-cccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 6666655 444444433 45556666666665555555555443 56666666666665555555666666666666666
Q ss_pred cccccCCcc-ccCCCCCCEEEccCCcCcccCCccccCCC-CCcEEEccCCcccCc-CCCCCC--CCCCcEEECCCCcCcc
Q 043978 243 HLTGQLPHH-VSGLLYLTNLDLFGNSLQGKVPSWLFTLP-SLVSVNLAWNKLTGP-IDGFQS--PNSLEEVHLEKNQIHG 317 (683)
Q Consensus 243 ~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~i~~~-~~~~~~--~~~L~~L~L~~n~i~~ 317 (683)
.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+. ++.+.. +++|++|++++|.+++
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 655444433 55566666666666665555555555554 566666666655542 222222 4556666666666655
Q ss_pred cCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCC-CcChhhhhcccccccc
Q 043978 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS-EFPSFLRNSEKIHGRI 396 (683)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~-~~p~~l~~~~~~~~~~ 396 (683)
.+|. .+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+. .+|..+
T Consensus 409 ~~p~------------~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~---------- 462 (768)
T 3rgz_A 409 KIPP------------TLSNCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQEL---------- 462 (768)
T ss_dssp ECCG------------GGGGCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCGGG----------
T ss_pred ccCH------------HHhcCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCHHH----------
Confidence 5544 45556666666666666542211 22345666666666666655 333322
Q ss_pred CCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCCC---CCCCCcEEEccCCcccCCCCccccCC
Q 043978 397 SKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSILV---PPPSTEVFLVSNNKLSGQIPPYICSL 470 (683)
Q Consensus 397 ~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l 470 (683)
..+++|+.|++++|.+++..+ ..+++|+.|++++|++++..+. .+++|++|++++|++.+.+|..+..+
T Consensus 463 -----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 463 -----MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp -----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred -----cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 456667777777777665432 2456677777777777655443 45667777777777776777777777
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccC---------------------------------------------cccEEECCC
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTT---------------------------------------------QLITLHLKN 505 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~---------------------------------------------~L~~L~l~~ 505 (683)
++|+.|++++|++.+.+|..++.... .+..++++.
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 77777777777776666666554320 111223334
Q ss_pred CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585 (683)
Q Consensus 506 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 585 (683)
|.+.+..|..|..+++|+.|++++|++++.+|..+..+++|++|++++|.+++.+|..|+.+++|++|+|++|++++.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 55555566677788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccce
Q 043978 586 KSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATR 630 (683)
Q Consensus 586 ~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~ 630 (683)
..+..++.|++||+++|+++|.+|.. ..+..+......+|+
T Consensus 698 --~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 698 --QAMSALTMLTEIDLSNNNLSGPIPEM--GQFETFPPAKFLNNP 738 (768)
T ss_dssp --GGGGGCCCCSEEECCSSEEEEECCSS--SSGGGSCGGGGCSCT
T ss_pred --hHHhCCCCCCEEECcCCcccccCCCc--hhhccCCHHHhcCCc
Confidence 45688999999999999999999953 234444555555664
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=503.21 Aligned_cols=588 Identities=21% Similarity=0.201 Sum_probs=479.3
Q ss_pred EEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEE
Q 043978 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89 (683)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 89 (683)
+.+|.++ ..++ .++. .+. +++++|+|++|.+.+. .+..|.++++|++|++++|.+.+..|.+|+++++|++|
T Consensus 7 ~~~~cs~--~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSH--LKLT-QVPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCS--SCCS-SCCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred CeeECCC--CCcc-cccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 4678887 6665 4554 343 7899999999998775 45679999999999999999999999999999999999
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccC
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCG 169 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~ 169 (683)
++++|.+...+. ..++++++|++|++++|.+.++.+..|+++ ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 79 ~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 79 NLQHNELSQLSD---KTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154 (680)
T ss_dssp ECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCSCTTTTC-TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS
T ss_pred ECCCCccCccCh---hhhccCCCCCEEECCCCccCccChhHcccc-CCCCEEECCCCcccccCchhhcccccCCEEEccC
Confidence 999998873222 246899999999999999999888889999 9999999999999988888899999999999999
Q ss_pred CCCCcccCC-C--CCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCC---CCCCCCCeeeccCcc
Q 043978 170 NIHLTGYLP-K--CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTST---GNLSKATEILFASNH 243 (683)
Q Consensus 170 n~~~~~~~~-~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~ 243 (683)
| .+.+..+ . ...+++|++|++++|.+.+..|..+..+++|+.+++.++.+.......+ ...++|+.|++++|.
T Consensus 155 n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 155 N-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp S-CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred C-cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 9 6665544 2 3356899999999999998888899999999999999887653221111 124789999999999
Q ss_pred ccccCCccccCCCC--CCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEEECCCCcCcccCC
Q 043978 244 LTGQLPHHVSGLLY--LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEVHLEKNQIHGTIP 320 (683)
Q Consensus 244 l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~L~~n~i~~~~~ 320 (683)
+.+..+.++..++. |++|++++|.+.+..+..+..+++|+.|++++|.+.+.. ..+..+++|++|++++|...+.++
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 99888888888755 999999999999888888999999999999999998754 456689999999999876554322
Q ss_pred ccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCC--CcChhhhhccccccccCC
Q 043978 321 SSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS--EFPSFLRNSEKIHGRISK 398 (683)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~--~~p~~l~~~~~~~~~~~~ 398 (683)
..- ...+....|..+++|++|++++|.+..++. ..+..+++|++|++++|.+. .++..
T Consensus 314 ~~~---lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~l~~~------------- 373 (680)
T 1ziw_A 314 LAS---LPKIDDFSFQWLKCLEHLNMEDNDIPGIKS----NMFTGLINLKYLSLSNSFTSLRTLTNE------------- 373 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCCBCCCCT----TTTTTCTTCCEEECTTCBSCCCEECTT-------------
T ss_pred ccc---ccccChhhcccCCCCCEEECCCCccCCCCh----hHhccccCCcEEECCCCchhhhhcchh-------------
Confidence 100 012333468889999999999999776543 34568899999999998643 33321
Q ss_pred Cccc--CCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccC----CCCCCCCcEEEccCCcccCCCCccccC
Q 043978 399 HDSK--GWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSI----LVPPPSTEVFLVSNNKLSGQIPPYICS 469 (683)
Q Consensus 399 ~~~~--~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l~~ 469 (683)
.+. ..++|+.|++++|.++++.+ ..+++|+.|++++|.+++.. +..+++|++|++++|.+.+..+..|..
T Consensus 374 -~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 452 (680)
T 1ziw_A 374 -TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452 (680)
T ss_dssp -TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTT
T ss_pred -hhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhc
Confidence 112 23689999999999988754 46788999999999987643 457899999999999999888899999
Q ss_pred CCCCCEEEcCCCcCC--CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCc--------hh
Q 043978 470 LSSLKYLSLSHNNLS--GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLP--------RS 539 (683)
Q Consensus 470 l~~L~~L~Ls~n~i~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~ 539 (683)
+++|+.|++++|.+. +.+|..+..+. +|+.|++++|++++..+..|.++++|+.|++++|++++..+ ..
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPFQPLR-NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred CcccccchhccccccccccCCcccccCC-CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence 999999999999885 46777777665 99999999999998888899999999999999999986422 24
Q ss_pred hhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHh-cc
Q 043978 540 LAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFT-SM 618 (683)
Q Consensus 540 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~-~~ 618 (683)
|..+++|++|++++|.+....+..|..+++|++|++++|++++..+ ..+..+++|+.|++++|++++ +|...|. .+
T Consensus 532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~ 608 (680)
T 1ziw_A 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA--SVFNNQVSLKSLNLQKNLITS-VEKKVFGPAF 608 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCCCB-CCHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH--hHhCCCCCCCEEECCCCcCCc-cChhHhcccc
Confidence 7889999999999999996666679999999999999999986543 345688999999999999996 5557777 88
Q ss_pred hhhcccccccceeeecc
Q 043978 619 EAMKNVDEQATRLQYMG 635 (683)
Q Consensus 619 ~~L~~l~l~~n~~~~~~ 635 (683)
++|+.+++++|++.--.
T Consensus 609 ~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCSEEECTTCCCCBCC
T ss_pred cccCEEEccCCCcccCC
Confidence 99999999999986543
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-56 Score=503.32 Aligned_cols=572 Identities=21% Similarity=0.195 Sum_probs=473.4
Q ss_pred CCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCC
Q 043978 6 TGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSK 85 (683)
Q Consensus 6 ~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 85 (683)
+.++++|+|++ +.+++..+. +|..+++|++|+|++|.+.+. .+..|+++++|++|++++|.++++.+.+|+++++
T Consensus 24 ~~~l~~L~Ls~--n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTH--NQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCS--SCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCC--CCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 46899999999 888865555 799999999999999998876 6788999999999999999999887788999999
Q ss_pred CCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCC--CCCCCc
Q 043978 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIF--LLPNLR 163 (683)
Q Consensus 86 L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~ 163 (683)
|++|++++|.+.... +..++++++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+. .+++|+
T Consensus 99 L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNSIQKIK---NNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp CSEEECCSSCCCCCC---SCTTTTCTTCCEEECCSSCCSCCCCCSSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCEEECCCCccCccC---hhHccccCCCCEEECCCCcccccCchhhccc-ccCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999999886332 2346899999999999999999888889899 9999999999999877666543 568999
Q ss_pred EEEccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccc---cCCCCCCEEEccCCcccccCCCCCCCCCC--CCee
Q 043978 164 VLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSI---GNLLFLETVDITYCNFMGSIPTSTGNLSK--ATEI 237 (683)
Q Consensus 164 ~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L 237 (683)
+|++++| .+.+..+ .+..+++|+.|+++++.+.......+ ...++|+.|++++|.+.+..+.++..++. |++|
T Consensus 175 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 9999999 6666555 67788999999999988754322221 13578999999999999988999988765 9999
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCc-----C-----CCCCCCCCCcE
Q 043978 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP-----I-----DGFQSPNSLEE 307 (683)
Q Consensus 238 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-----~-----~~~~~~~~L~~ 307 (683)
++++|.+.+..+..++.+++|++|++++|.+.+..|..+..+++|+.|++++|..... . ..+..+++|++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 9999999988889999999999999999999988899999999999999998754421 1 14568899999
Q ss_pred EECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc--ccccccccccccCCCCccEEEcccCCCCCcChh
Q 043978 308 VHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL--SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF 385 (683)
Q Consensus 308 L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~ 385 (683)
|++++|.+.+..+. .|..+++|++|++++|.+. .++.. .......++|+.|++++|++..++.
T Consensus 334 L~l~~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~~~~~~l~~~--~f~~~~~~~L~~L~L~~n~l~~~~~- 398 (680)
T 1ziw_A 334 LNMEDNDIPGIKSN------------MFTGLINLKYLSLSNSFTSLRTLTNE--TFVSLAHSPLHILNLTKNKISKIES- 398 (680)
T ss_dssp EECCSCCBCCCCTT------------TTTTCTTCCEEECTTCBSCCCEECTT--TTGGGTTSCCCEEECTTSCCCEECT-
T ss_pred EECCCCccCCCChh------------HhccccCCcEEECCCCchhhhhcchh--hhcccccCcCceEECCCCCCCeECh-
Confidence 99999999854444 6888999999999999742 22211 0111134689999999999876532
Q ss_pred hhhccccccccCCCcccCCCcCcEEECCCCccccc----CCCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCc
Q 043978 386 LRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHI----ALHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNK 458 (683)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~ 458 (683)
..+..+++|+.|++++|.+++. .+..+++|+.|++++|++.+. .+..+++|++|++++|.
T Consensus 399 -------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 399 -------------DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp -------------TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred -------------hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 1237789999999999998753 345789999999999998754 34578999999999999
Q ss_pred cc--CCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccc--------ccccCCCCccEEEcC
Q 043978 459 LS--GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIH--------DTFENASNIQSFDLN 528 (683)
Q Consensus 459 i~--~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L~ 528 (683)
+. +..|..+..+++|+.|++++|.+++..+..+..+ ++|++|++++|++++..+ ..|.++++|+.|+++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECC
Confidence 87 5678899999999999999999995444445555 499999999999987533 247889999999999
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCcccc-CCCCCcEEeCCCCcCC
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF-SFQALRIIDLSRNEFK 607 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~ls~n~~~ 607 (683)
+|+++...+..|..+++|++|++++|+++...+..|..+++|+.|++++|++++..+ ..+. .+++|+++++++|++.
T Consensus 545 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK--KVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH--HHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh--hHhcccccccCEEEccCCCcc
Confidence 999997666789999999999999999998777788999999999999999987644 2233 6789999999999999
Q ss_pred CCCcH-HHHhcc
Q 043978 608 DFLPR-RNFTSM 618 (683)
Q Consensus 608 ~~~p~-~~~~~~ 618 (683)
+.++. .+|..+
T Consensus 623 c~c~~~~~~~~~ 634 (680)
T 1ziw_A 623 CTCESIAWFVNW 634 (680)
T ss_dssp BCCCCCSSEECC
T ss_pred cCCccHHHHHHH
Confidence 87773 455443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=457.56 Aligned_cols=514 Identities=20% Similarity=0.183 Sum_probs=296.0
Q ss_pred CCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccE
Q 043978 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~ 140 (683)
++++|++++|.++++.|.+|+++++|++|++++|.+.. ..|..+.++++|++|++++|.+....+..|+.+ ++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW---IHEDTFQSQHRLDTLVLTANPLIFMAETALSGP-KALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC-TTCCE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce---eChhhccCccccCeeeCCCCcccccChhhhccc-ccccE
Confidence 45555555555555555555555555555555554431 112223455555555555555555555555555 56666
Q ss_pred EEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc-cCCCCCCCCCCCEEECCCCcCccccCccccCCCCCC--EEEccC
Q 043978 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG-YLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE--TVDITY 217 (683)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~--~L~l~~ 217 (683)
|++++|++++..+..+..+++|++|++++| .+.. ..+.+..+++|++|++++|.+.+..+..+..+++|+ .|++++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 666666555444455556666666666665 3333 223344456666666666666655555666666666 666666
Q ss_pred CcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCc-----ccCCccccCCC--CCcEEEccCC
Q 043978 218 CNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ-----GKVPSWLFTLP--SLVSVNLAWN 290 (683)
Q Consensus 218 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~--~L~~L~L~~n 290 (683)
|.+.+..+..+.. ..|+.|++++|.. .+..+..+.+++...+...... ...+..+..+. +|+.|++++|
T Consensus 189 n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 189 NDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred CccCccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 6666555544433 4566666666541 2222333333222222211111 11111222221 4566666666
Q ss_pred cccCcCCC-CCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCc
Q 043978 291 KLTGPIDG-FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSL 369 (683)
Q Consensus 291 ~i~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L 369 (683)
.+....+. +..+++|++|++++|.++ .+|. .+..+++|++|++++|.+..+.. ..+..+++|
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~------------~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L 327 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPS------------GLVGLSTLKKLVLSANKFENLCQ----ISASNFPSL 327 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS------------SCCSCTTCCEEECTTCCCSBGGG----GCGGGCTTC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCCh------------hhcccccCCEEECccCCcCcCch----hhhhccCcC
Confidence 66554333 445566666666666655 3443 34556666666666666544422 123355666
Q ss_pred cEEEcccCCCC-CcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-----CCCCCCceEEeCCCCCCCccC-
Q 043978 370 LKLSFSNCNVS-EFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-----LHPWKNIRTLDLRNNKIQGSI- 442 (683)
Q Consensus 370 ~~L~l~~~~l~-~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~l~~~~- 442 (683)
++|++++|.+. .+| ...+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+..
T Consensus 328 ~~L~l~~n~~~~~~~--------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 393 (606)
T 3t6q_A 328 THLSIKGNTKRLELG--------------TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393 (606)
T ss_dssp SEEECCSCSSCCBCC--------------SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred CEEECCCCCcccccc--------------hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence 66666666543 222 222255666666666666665542 235566666666666655432
Q ss_pred --CCCCCCCcEEEccCCcccCCCCc-cccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccc---ccccc
Q 043978 443 --LVPPPSTEVFLVSNNKLSGQIPP-YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGH---IHDTF 516 (683)
Q Consensus 443 --~~~~~~L~~L~l~~n~i~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~ 516 (683)
+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+. +|++|++++|++.+. .+..+
T Consensus 394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGG
T ss_pred HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhh
Confidence 23456666777777766655443 377777788888888777755555555544 788888888877653 22457
Q ss_pred cCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCC
Q 043978 517 ENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQAL 596 (683)
Q Consensus 517 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 596 (683)
..+++|+.|++++|++++..|..|..+++|++|++++|++++..|.++..+++| .|++++|++++..+ ..+..+++|
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~--~~~~~l~~L 549 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP--SLLPILSQQ 549 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG--GGHHHHHTS
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH--hhcccCCCC
Confidence 777788888888888777777777778888888888888877777777777888 88888888775544 334566777
Q ss_pred cEEeCCCCcCCCCCcHHHHhcc
Q 043978 597 RIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 597 ~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
+.|++++|++.+.++..+|..+
T Consensus 550 ~~L~l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 550 RTINLRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp SEEECTTCCEECSGGGHHHHHH
T ss_pred CEEeCCCCCccccCCcHHHHHH
Confidence 8888888888776665555433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-51 Score=451.76 Aligned_cols=508 Identities=18% Similarity=0.183 Sum_probs=353.7
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCE
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
++++|++++|.+++. .+..|+++++|++|++++|.+.++.|.+|+++++|++|++++|.+.. ..|..++++++|++
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF---MAETALSGPKALKH 109 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE---ECTTTTSSCTTCCE
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc---cChhhhcccccccE
Confidence 577888887777655 46677778888888888887777777777888888888888777652 22334677788888
Q ss_pred EEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCC--EEECC
Q 043978 116 LHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLR--ELDLS 192 (683)
Q Consensus 116 L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~--~L~L~ 192 (683)
|++++|.++...+..+..+ ++|++|++++|++.+.....+..+++|++|++++| .+....+ .+..+++|+ .|+++
T Consensus 110 L~L~~n~i~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQ-KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp EECTTSCCSCGGGSCCTTC-TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECT
T ss_pred eeccccCcccCCcchhccC-CcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecC
Confidence 8888877777666677777 77888888888777644344445777888888777 5554433 456666777 77777
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCe--eeccCc---cccccCCccccCCC--CCCEEEccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATE--ILFASN---HLTGQLPHHVSGLL--YLTNLDLFG 265 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~--L~l~~n---~l~~~~~~~l~~l~--~L~~L~l~~ 265 (683)
+|.+.+..|..+. ...|+.|++++|... +..+..+..++. +.+... ......+..+..+. +|++|++++
T Consensus 188 ~n~l~~~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 188 GNDIAGIEPGAFD-SAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp TCCCCEECTTTTT-TCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred CCccCccChhHhh-hccccccccCCchhH---HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 7777755554443 356777777776421 111222222211 111110 01111122222222 566777777
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 266 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
|.+.+..+..+..+++|+.|++++|.++..+..+..+++|++|++++|.+.+..|. .+..+++|++|+
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~ 331 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI------------SASNFPSLTHLS 331 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGG------------CGGGCTTCSEEE
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchh------------hhhccCcCCEEE
Confidence 77766666666667777777777777665555566667777777777766633332 455667777777
Q ss_pred CCCCCcc-ccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC--
Q 043978 346 LSNNNLL-SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-- 422 (683)
Q Consensus 346 l~~n~l~-~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-- 422 (683)
+++|.+. .++. ..+..+++|++|++++|.+..++.. + ..+..+++|+.|++++|.+.+..+
T Consensus 332 l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-----------~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 332 IKGNTKRLELGT----GCLENLENLRELDLSHDDIETSDCC-----------N-LQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp CCSCSSCCBCCS----STTTTCTTCCEEECCSSCCCEEEES-----------T-TTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CCCCCcccccch----hhhhccCcCCEEECCCCccccccCc-----------c-hhcccCCCCCEEECCCCcCCcCCHHH
Confidence 7777643 1211 2244667777777777766543210 1 112566777777777777766533
Q ss_pred -CCCCCceEEeCCCCCCCccC----CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCC---CChhhhhc
Q 043978 423 -HPWKNIRTLDLRNNKIQGSI----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT---IPPCLGNF 494 (683)
Q Consensus 423 -~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~---~~~~~~~~ 494 (683)
..+++|+.|++++|++++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 35677888888888776543 34678899999999999888889999999999999999999752 22445555
Q ss_pred cCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEE
Q 043978 495 TTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574 (683)
Q Consensus 495 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 574 (683)
. +|+.|++++|++++..+..|.++++|+.|++++|++++..|..+..+++| +|++++|.+++..|..+..+++|+.|+
T Consensus 476 ~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 476 G-RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp T-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred C-CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 4 99999999999999999999999999999999999999999999999999 999999999998888899999999999
Q ss_pred ccCCcCccc
Q 043978 575 LRSNRFYGP 583 (683)
Q Consensus 575 l~~n~l~~~ 583 (683)
+++|++...
T Consensus 554 l~~N~~~c~ 562 (606)
T 3t6q_A 554 LRQNPLDCT 562 (606)
T ss_dssp CTTCCEECS
T ss_pred CCCCCcccc
Confidence 999998754
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=448.54 Aligned_cols=513 Identities=20% Similarity=0.164 Sum_probs=309.0
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
++|++|+|++|.+.+. .+..|.++++|++|++++|.++++.|.+|.++++|++|++++|.+.. ..|..++++++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS---FSPGSFSGLTSLE 107 (606)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC---CCTTSSTTCTTCC
T ss_pred CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc---cChhhcCCcccCC
Confidence 4455555555555433 23345555555555555555555555555555555555555554431 1122344455555
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCC-CCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 193 (683)
+|++++|.+....+..++++ ++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 108 ~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n----------------------- 163 (606)
T 3vq2_A 108 NLVAVETKLASLESFPIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN----------------------- 163 (606)
T ss_dssp EEECTTSCCCCSSSSCCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-----------------------
T ss_pred EEEccCCccccccccccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-----------------------
Confidence 55555555544444444444 455555555555443 23444445555555555544
Q ss_pred CcCccccCccccCCCCCC----EEEccCCcccccCCCCCCCCCCCCeeeccCcccc-ccCCccccCCCCCCEEEccCCcC
Q 043978 194 SDFSGEIPYSIGNLLFLE----TVDITYCNFMGSIPTSTGNLSKATEILFASNHLT-GQLPHHVSGLLYLTNLDLFGNSL 268 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l 268 (683)
.+.+..+..+..+++|+ ++++++|.+.+..+..+... +|++|++++|.+. +..+..+.+++.++.+++..+.+
T Consensus 164 -~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 164 -YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp -CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred -cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 44443343343333322 45555555443333333322 4555555555443 23334444555555444433222
Q ss_pred cc------cCCccccCCC--CCcEEEc-cCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 269 QG------KVPSWLFTLP--SLVSVNL-AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 269 ~~------~~~~~l~~l~--~L~~L~L-~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
.. ..+..+..+. .++.+++ ..+.+.+..+.+..+++|+.|++++|.+. .+| .+..++
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-------------~l~~~~ 307 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-------------DVPKHF 307 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-------------CCCTTC
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-------------hccccc
Confidence 11 0001111111 2344444 33344443333445555555555555554 111 244555
Q ss_pred CCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccc
Q 043978 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419 (683)
Q Consensus 340 ~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 419 (683)
+|+.|++++|.+..++ .. .+++|+.|++++|....- + .+..+++|+.|++++|.+++
T Consensus 308 ~L~~L~l~~n~l~~lp------~~-~l~~L~~L~l~~n~~~~~-------------~---~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 308 KWQSLSIIRCQLKQFP------TL-DLPFLKSLTLTMNKGSIS-------------F---KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp CCSEEEEESCCCSSCC------CC-CCSSCCEEEEESCSSCEE-------------C---CCCCCTTCCEEECCSSCEEE
T ss_pred cCCEEEcccccCcccc------cC-CCCccceeeccCCcCccc-------------h---hhccCCCCCEEECcCCccCC
Confidence 5666666666543332 11 455666666665532210 0 11455666666666666654
Q ss_pred cC-----CCCCCCceEEeCCCCCCCcc--CCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhh
Q 043978 420 IA-----LHPWKNIRTLDLRNNKIQGS--ILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCL 491 (683)
Q Consensus 420 ~~-----~~~~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 491 (683)
.. +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 42 12556667777777766543 23457788888888888887776 688999999999999999987777777
Q ss_pred hhccCcccEEECCCCcccc-cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCC
Q 043978 492 GNFTTQLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570 (683)
Q Consensus 492 ~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 570 (683)
..+. +|++|++++|++.+ ..+..|..+++|+.|++++|++++..|..|..+++|++|++++|++++..|..|+.+++|
T Consensus 445 ~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 445 LGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred cCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 7665 99999999999987 478899999999999999999999999999999999999999999999889999999999
Q ss_pred CEEEccCCcCcccCCCCccccCCC-CCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 571 KILILRSNRFYGPLCKSITTFSFQ-ALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 571 ~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
++|++++|+++. +|.. +..++ +|++|++++|++.+.++..+|..+
T Consensus 524 ~~L~l~~N~l~~-~p~~--~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~ 569 (606)
T 3vq2_A 524 STLDCSFNRIET-SKGI--LQHFPKSLAFFNLTNNSVACICEHQKFLQW 569 (606)
T ss_dssp CEEECTTSCCCC-EESC--GGGSCTTCCEEECCSCCCCCSSTTHHHHTT
T ss_pred CEEECCCCcCcc-cCHh--HhhhcccCcEEEccCCCcccCCccHHHHHH
Confidence 999999999984 4432 56776 599999999999988887666554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=448.85 Aligned_cols=521 Identities=17% Similarity=0.172 Sum_probs=401.7
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLL 116 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L 116 (683)
-++++.+++.++. +|..+. ++|++|++++|.++++.+..|.++++|++|++++|.+.
T Consensus 13 ~~~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------- 69 (606)
T 3vq2_A 13 NITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE------------------- 69 (606)
T ss_dssp TTEEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------------
T ss_pred CCceEccCCCccc--CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-------------------
Confidence 3567777777654 454443 57888888888887777777777777777777776554
Q ss_pred EcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 117 HLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 117 ~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
++.+..|.++ ++|++|++++|++.+..|..++.+++|++|++++| .+....+ .+..+++|++|++++|.
T Consensus 70 --------~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 139 (606)
T 3vq2_A 70 --------TIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF 139 (606)
T ss_dssp --------EECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC
T ss_pred --------ccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc
Confidence 3333344444 44555555555554444445555555555555555 3333322 45555566666666666
Q ss_pred Ccc-ccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCC----eeeccCccccccCCccccCCCCCCEEEccCCcCc-
Q 043978 196 FSG-EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKAT----EILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ- 269 (683)
Q Consensus 196 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~- 269 (683)
+.+ .+|..+.++++|++|++++|.+.+..+..++.+++|+ ++++++|.+.+..+..+... +|++|++++|.+.
T Consensus 140 l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS 218 (606)
T ss_dssp CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCH
T ss_pred ccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccch
Confidence 654 4688999999999999999999988888888777665 89999999997777766655 8999999999886
Q ss_pred ccCCccccCCCCCcEEEccCCcccCc--CCC-----CCCC--CCCcEEEC-CCCcCcccCCccchhccCcccccccCCCC
Q 043978 270 GKVPSWLFTLPSLVSVNLAWNKLTGP--IDG-----FQSP--NSLEEVHL-EKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 270 ~~~~~~l~~l~~L~~L~L~~n~i~~~--~~~-----~~~~--~~L~~L~L-~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
+..|..+..++.++.+++..+.+... ... +..+ -.++.+++ ..+.+.+.+|. +..++
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-------------~~~l~ 285 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-------------FHCLA 285 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-------------CGGGT
T ss_pred hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-------------cccCC
Confidence 46777888999999998876544321 110 1111 14566777 55666654442 67789
Q ss_pred CCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC-ccc
Q 043978 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN-FLT 418 (683)
Q Consensus 340 ~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~ 418 (683)
+|+.|++++|.+..++ .+..+++|+.|++++|.+..+|. ..+++|+.|++++| .+.
T Consensus 286 ~L~~L~l~~~~~~~l~------~l~~~~~L~~L~l~~n~l~~lp~-----------------~~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLE------DVPKHFKWQSLSIIRCQLKQFPT-----------------LDLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp TCSEEEEESCCCCCCC------CCCTTCCCSEEEEESCCCSSCCC-----------------CCCSSCCEEEEESCSSCE
T ss_pred CCCEEEecCccchhhh------hccccccCCEEEcccccCccccc-----------------CCCCccceeeccCCcCcc
Confidence 9999999999977663 45578999999999999877663 26789999999999 444
Q ss_pred ccCCCCCCCceEEeCCCCCCCccC-----CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC-hhhh
Q 043978 419 HIALHPWKNIRTLDLRNNKIQGSI-----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP-PCLG 492 (683)
Q Consensus 419 ~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~ 492 (683)
......+++|+.|++++|.+++.. +..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+.
T Consensus 343 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 421 (606)
T 3vq2_A 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421 (606)
T ss_dssp ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT
T ss_pred chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh
Confidence 556668899999999999998652 2378999999999999985 55889999999999999999986666 3555
Q ss_pred hccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccc-cCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCC
Q 043978 493 NFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEG-SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLK 571 (683)
Q Consensus 493 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 571 (683)
.+ ++|++|++++|++.+..+..|.++++|+.|++++|++++ ..|..|..+++|++|++++|.+++..|.+|..+++|+
T Consensus 422 ~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 422 SL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 55 499999999999999999999999999999999999987 4788999999999999999999999999999999999
Q ss_pred EEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcch-hhcccccccceeee
Q 043978 572 ILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSME-AMKNVDEQATRLQY 633 (683)
Q Consensus 572 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~-~L~~l~l~~n~~~~ 633 (683)
+|++++|++.+..| ..+..+++|++||+++|+++ .+|.. |..++ +|+.+++++|++.-
T Consensus 501 ~L~Ls~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 501 LLNMSHNNLLFLDS--SHYNQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EEECCSSCCSCEEG--GGTTTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCC
T ss_pred EEECCCCcCCCcCH--HHccCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCccc
Confidence 99999999988765 45678999999999999999 67855 88886 59999999999864
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=460.91 Aligned_cols=524 Identities=21% Similarity=0.199 Sum_probs=277.5
Q ss_pred CcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCC
Q 043978 7 GNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKL 86 (683)
Q Consensus 7 ~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 86 (683)
.++++|||++ +.+++..+. +|..+++|++|+|++|.....-.+..|+++++|++|+|++|.+.+..|..|+++++|
T Consensus 24 ~~l~~LdLs~--N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSF--NYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEES--CCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CCcCEEECCC--CcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 4455555555 555443333 455555555555555533222113445555555555555555555555555555555
Q ss_pred CEEeCCCCcCccccCCHHH--HHccCCCCCEEEcCCccCCcCCh-hhhhcCcCCccEEEcCCCcCCCCCCccCCCC--CC
Q 043978 87 THLGLSCRVLTIEQRTFDL--LASNLTKLSLLHLGSTNLSLIKP-FSLLNLSSTMTDLDLSGTRIQGNFPDQIFLL--PN 161 (683)
Q Consensus 87 ~~L~ls~n~~~~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l--~~ 161 (683)
++|++++|.+.. ..+. .+.++++|++|++++|.+.+..+ ..|.++ ++|++|++++|.+.+..+..+..+ ++
T Consensus 100 ~~L~Ls~n~l~~---~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L-~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 100 FELRLYFCGLSD---AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL-NSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCEECTTCCCSS---CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC-SSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CEeeCcCCCCCc---ccccCccccccCCCCEEECCCCcccccccchhHhhC-CCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 555555554431 1111 13455555555555555544432 344555 555555555555554444444444 45
Q ss_pred CcEEEccCCCCCcccCC-CCCCCCC------CCEEECCCCcCccccCccccCC---CCCCEEEccCCcccccCCCCCCCC
Q 043978 162 LRVLYLCGNIHLTGYLP-KCNWSSP------LRELDLSLSDFSGEIPYSIGNL---LFLETVDITYCNFMGSIPTSTGNL 231 (683)
Q Consensus 162 L~~L~l~~n~~~~~~~~-~~~~~~~------L~~L~L~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~l 231 (683)
|+.|++++| .+.+..+ .+..+++ |+.|++++|.+.+..+..+... ..++.+.++.+.....
T Consensus 176 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------- 246 (844)
T 3j0a_A 176 LSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------- 246 (844)
T ss_dssp SCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------
T ss_pred cceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------
Confidence 555555555 3333222 2222222 4555555554444333333221 3344444432211100
Q ss_pred CCCCeeeccCccccccCCccccCC--CCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC-CCCCCCCCCcEE
Q 043978 232 SKATEILFASNHLTGQLPHHVSGL--LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNSLEEV 308 (683)
Q Consensus 232 ~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L 308 (683)
+..+.+.+.....+.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.... ..+..+++|++|
T Consensus 247 -------~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 247 -------FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp -------SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred -------ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 00111222222223332 45666666666666555555666666666666666665533 234456666666
Q ss_pred ECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhh
Q 043978 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRN 388 (683)
Q Consensus 309 ~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~ 388 (683)
++++|.+.+..|. .|..+++|+.|++++|.+..++. ..+..+++|+.|++++|.++.++
T Consensus 320 ~Ls~N~l~~~~~~------------~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~----- 378 (844)
T 3j0a_A 320 NLSYNLLGELYSS------------NFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIH----- 378 (844)
T ss_dssp EEESCCCSCCCSC------------SCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCCSCCCS-----
T ss_pred ECCCCCCCccCHH------------HhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCCCCccc-----
Confidence 6666666533333 45566666666666666544432 12345666666666666555432
Q ss_pred ccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCcccc
Q 043978 389 SEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC 468 (683)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 468 (683)
.+++|+.|++++|+++.++. ...+++.+++++|++++.. .+..+.
T Consensus 379 --------------~~~~L~~L~l~~N~l~~l~~-~~~~l~~L~ls~N~l~~l~--------------------~~~~~~ 423 (844)
T 3j0a_A 379 --------------FIPSIPDIFLSGNKLVTLPK-INLTANLIHLSENRLENLD--------------------ILYFLL 423 (844)
T ss_dssp --------------SCCSCSEEEEESCCCCCCCC-CCTTCCEEECCSCCCCSST--------------------THHHHT
T ss_pred --------------CCCCcchhccCCCCcccccc-cccccceeecccCccccCc--------------------hhhhhh
Confidence 13455566666655553322 1234445555555444211 112234
Q ss_pred CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc-----ccccccccCCCCccEEEcCCCcccccCchhhhcC
Q 043978 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE-----GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKC 543 (683)
Q Consensus 469 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 543 (683)
.+++|+.|++++|++.+..+.......++|+.|++++|.++ +..+..|.++++|+.|+|++|++++..|..|..+
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 56666666666666653322222222346777777777665 3334567777888888888888887777778888
Q ss_pred CCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhc
Q 043978 544 VKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTS 617 (683)
Q Consensus 544 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~ 617 (683)
++|++|++++|.+++..+..+. ++|+.|++++|++++..|. .+++|+.+++++|++.+.++..+|..
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~-----~~~~L~~l~l~~Np~~C~c~~~~f~~ 570 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD-----VFVSLSVLDITHNKFICECELSTFIN 570 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC-----CCSSCCEEEEEEECCCCSSSCCSHHH
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh-----HhCCcCEEEecCCCcccccccHHHHH
Confidence 8888888888888776666554 7788888888888766552 24577888888888877666444443
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=442.62 Aligned_cols=509 Identities=20% Similarity=0.223 Sum_probs=319.9
Q ss_pred CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCH-HHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCc
Q 043978 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTF-DLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L 138 (683)
++|++|+|++|.++++.|..|.++++|++|++++|... ..+ |..+.++++|++|++++|.+....|..|..+ ++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l-~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL-FHL 99 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC-SSC
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC-ccc
Confidence 45555666665555555555556666666666555322 111 2234555566666666666665556666666 666
Q ss_pred cEEEcCCCcCCCCCCcc--CCCCCCCcEEEccCCCCCcccCC--CCCCCCCCCEEECCCCcCccccCccccCC--CCCCE
Q 043978 139 TDLDLSGTRIQGNFPDQ--IFLLPNLRVLYLCGNIHLTGYLP--KCNWSSPLRELDLSLSDFSGEIPYSIGNL--LFLET 212 (683)
Q Consensus 139 ~~L~l~~n~i~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l--~~L~~ 212 (683)
++|++++|.+.+..+.. +..+++|++|++++| .+.+..+ .+..+++|++|++++|.+.+..+..+..+ ++|+.
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 66666666666544433 566666666666666 3333222 35555666666666666655555555555 66666
Q ss_pred EEccCCcccccCCCCCCCCCC------CCeeeccCccccccCCccccCC---CCCCEEEccCCcCcccCCccccCCCCCc
Q 043978 213 VDITYCNFMGSIPTSTGNLSK------ATEILFASNHLTGQLPHHVSGL---LYLTNLDLFGNSLQGKVPSWLFTLPSLV 283 (683)
Q Consensus 213 L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 283 (683)
|++++|.+.+..+..++.+++ |++|++++|.+.+..+..+... ..++.+.++.+......
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------- 247 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----------- 247 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----------
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc-----------
Confidence 666666666655555554443 6666666665555444444322 34555555433221100
Q ss_pred EEEccCCcccC-cCCCCC--CCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccccc
Q 043978 284 SVNLAWNKLTG-PIDGFQ--SPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360 (683)
Q Consensus 284 ~L~L~~n~i~~-~~~~~~--~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 360 (683)
..+.+.. ....+. ..++|++|++++|.+.+..+. .|..+++|+.|++++|.+..+..
T Consensus 248 ----~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~L~~n~i~~~~~---- 307 (844)
T 3j0a_A 248 ----GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR------------VFETLKDLKVLNLAYNKINKIAD---- 307 (844)
T ss_dssp ----SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC------------CSSSCCCCCEEEEESCCCCEECT----
T ss_pred ----cccccCCCChhhhhccccCCccEEECCCCcccccChh------------hhhcCCCCCEEECCCCcCCCCCh----
Confidence 0111111 111111 124566666666665533332 45556666666666666554432
Q ss_pred ccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCC
Q 043978 361 DIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNK 437 (683)
Q Consensus 361 ~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~ 437 (683)
..+..+++|++|++++|.+..++. ..+.++++|+.|++++|.+..+.. ..+++|+.|++++|.
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYS--------------SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCS--------------CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HHhcCCCCCCEEECCCCCCCccCH--------------HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 223456666666666666554321 112556667777777776665543 345677777777777
Q ss_pred CCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccc-cc
Q 043978 438 IQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD-TF 516 (683)
Q Consensus 438 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 516 (683)
+++... +++|+.|++++|++.. +|.. ..+++.|++++|.+.+.-...+....++|+.|++++|++++..+. .+
T Consensus 374 l~~i~~--~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 374 LTTIHF--IPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp SCCCSS--CCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred CCcccC--CCCcchhccCCCCccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 764332 6778888888888873 4433 467999999999998432222222345999999999999876443 56
Q ss_pred cCCCCccEEEcCCCccc-----ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCcccc
Q 043978 517 ENASNIQSFDLNCNKFE-----GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF 591 (683)
Q Consensus 517 ~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 591 (683)
..+++|+.|++++|.++ +..+..|..+++|++|++++|.+++..|..|..+++|+.|+|++|++++..+... .
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~ 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--P 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC--C
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh--h
Confidence 67899999999999997 3445678899999999999999999899999999999999999999987655322 2
Q ss_pred CCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 592 SFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 592 ~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
++|+.||+++|++++..| ..| ..|+.+++++|++.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~-~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNP-DVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp --SCCCEEEEEEECCCCCCS-CCC---SSCCEEEEEEECCC
T ss_pred --ccccEEECCCCcCCCCCh-hHh---CCcCEEEecCCCcc
Confidence 899999999999998877 334 57899999999875
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=405.19 Aligned_cols=482 Identities=20% Similarity=0.182 Sum_probs=336.9
Q ss_pred CCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEE
Q 043978 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVL 165 (683)
Q Consensus 86 L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 165 (683)
.++++.++..++..+..+ .+++++|++++|.++.+.+..|..+ ++|++|++++|++.+..+..+..+++|++|
T Consensus 9 ~~~~~c~~~~l~~ip~~l------~~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 81 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL------PFSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (570)
T ss_dssp TTEEECCSSCCSSCCSSS------CSSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CcEEEeCCCCccccCCCc------cccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEE
Confidence 455666666555333322 2578999999999988888888888 899999999999887777888899999999
Q ss_pred EccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCcc
Q 043978 166 YLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNH 243 (683)
Q Consensus 166 ~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~ 243 (683)
++++| .+....+ .+..+++|++|++++|.+....+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 82 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 82 ILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred eCcCC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 99998 6666554 78888999999999998886555578899999999999998876 468888889999999999999
Q ss_pred ccccCCccccCCCCC----CEEEccCCcCcccCCccccCCCCCcEEEccCCcccC--cCCCCCCCCCCc-----------
Q 043978 244 LTGQLPHHVSGLLYL----TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLE----------- 306 (683)
Q Consensus 244 l~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~~~L~----------- 306 (683)
+.+..+..++.+++| +++++++|.+.+..+..+... +|+.|++++|.... ....+..+..++
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 888777778777777 889999999887777766655 78899888874321 001111223332
Q ss_pred ---------------------EEECCCC-cCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccccccccc
Q 043978 307 ---------------------EVHLEKN-QIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKY 364 (683)
Q Consensus 307 ---------------------~L~L~~n-~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~ 364 (683)
.++++++ .+.+..| ..+..+++|+.|++++|.+..++. ...
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~------------~~~~~l~~L~~L~l~~~~l~~l~~-----~~~ 302 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII------------DLFNCLTNVSSFSLVSVTIERVKD-----FSY 302 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST------------TTTGGGTTCSEEEEESCEECSCCB-----CCS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhch------------hhhcCcCcccEEEecCccchhhhh-----hhc
Confidence 2333322 2222222 245566777777777777655432 223
Q ss_pred CCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC-CCCCCceEEeCCCCCCCccC-
Q 043978 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-HPWKNIRTLDLRNNKIQGSI- 442 (683)
Q Consensus 365 ~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~l~~~~- 442 (683)
.+ +|++|++++|.+..+|. ..+++|+.|++++|.+..... ..+++|+.|++++|.+++..
T Consensus 303 ~~-~L~~L~l~~n~~~~l~~-----------------~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 303 NF-GWQHLELVNCKFGQFPT-----------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp CC-CCSEEEEESCBCSSCCB-----------------CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cC-CccEEeeccCcccccCc-----------------ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 44 77777777777766554 345677777777776655433 45677777777777776432
Q ss_pred ----CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccC
Q 043978 443 ----LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFEN 518 (683)
Q Consensus 443 ----~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 518 (683)
+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+...+...++|++|++++|++.+..+..|.+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 23567777777777777754333 7777777777777777764444222223347777777777777777777777
Q ss_pred CCCccEEEcCCCccc-ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCc
Q 043978 519 ASNIQSFDLNCNKFE-GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALR 597 (683)
Q Consensus 519 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 597 (683)
+++|+.|++++|+++ +..|..+..+++|++|++++|.+++..|.+|..+++|++|++++|++++..+ ..+..+++|+
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~ 521 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD--GIFDRLTSLQ 521 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCC
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH--HHhhcccCCc
Confidence 777777777777776 3566777777777777777777777667777777777777777777766543 2345677777
Q ss_pred EEeCCCCcCCCCCcHHH
Q 043978 598 IIDLSRNEFKDFLPRRN 614 (683)
Q Consensus 598 ~L~ls~n~~~~~~p~~~ 614 (683)
+|++++|++++.+|..+
T Consensus 522 ~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 522 KIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECCSSCBCCCTTTTH
T ss_pred EEEecCCcccCCCcchH
Confidence 77777777777766433
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=399.33 Aligned_cols=478 Identities=18% Similarity=0.169 Sum_probs=246.7
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
++|++|++++|.+.+. .+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-------------------- 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-------------------- 84 (549)
T ss_dssp TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--------------------
T ss_pred CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC--------------------
Confidence 4455555555554433 2344555555555555555555554455555555555555554
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCC-CCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGN-FPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLS 192 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~ 192 (683)
.+++..+..|+.+ ++|++|++++|.+.+. .|..+..+++|++|++++|.......+ .+..+++|++|+++
T Consensus 85 -------~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 85 -------HLSSLSSSWFGPL-SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp -------CCCSCCHHHHTTC-TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred -------ccCccCHHHhccC-CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 4444444444444 5555555555554431 234445555555555555411222111 33334444444444
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccC---CccccCCCCCCEEEccCCcCc
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQL---PHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~ 269 (683)
+|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. ......+++|+.|++++|.+.
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 44444334444444444444444444332111111122334444444444433211 011123344555555555444
Q ss_pred ccCCc----cccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 270 GKVPS----WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 270 ~~~~~----~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
+..+. .+..+++|+.+++++|.+.+.... + ......+..+++|+.++
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~---------------------~--------~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDF---------------------N--------PSESDVVSELGKVETVT 287 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC---------------------C--------CCTTTCCCCCTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccc---------------------c--------ccchhhhhhhccccccc
Confidence 32221 122344445555554443321100 0 00011234455666666
Q ss_pred CCCCCccccccccccc-cccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC---
Q 043978 346 LSNNNLLSFTSSGNID-IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA--- 421 (683)
Q Consensus 346 l~~n~l~~l~~~~~~~-~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--- 421 (683)
+.++.+.......... .....++|+.|++++|.+..+|..+. ..+++|+.|++++|.+++..
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~--------------~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS--------------QHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH--------------HHCTTCCEEECCSSCCCHHHHHH
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH--------------hcCccccEEEccCCccccccccc
Confidence 6665533321110000 01134567777777777777665432 34677777777777766532
Q ss_pred ---CCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCC--ccccCCCCCCEEEcCCCcCCCCCChhhhhccC
Q 043978 422 ---LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIP--PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496 (683)
Q Consensus 422 ---~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 496 (683)
...+++|+.|++++|++++ ..+ ..+..+++|++|++++|+++ .+|..+....
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~---------------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~- 410 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRS---------------------MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE- 410 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCC---------------------HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT-
T ss_pred hhhhhccccCcEEEccCCcccc---------------------cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc-
Confidence 2345555566555555542 211 34666777777777777776 5666554443
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+|++|++++|++++..... .++|+.|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|+++
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp TCCEEECTTSCCSCCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred cccEEECCCCCcccccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 7777777777776433222 247788888888777532 46778888888888887 4554 3567888888888
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcH-HHHhcc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR-RNFTSM 618 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~-~~~~~~ 618 (683)
+|++++..+ ..+..+++|++|++++|++.+.+|. .++..+
T Consensus 482 ~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 482 RNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp SSCCCCCCT--TGGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCccCCcCH--HHHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 888876654 3356778888888888888887773 344333
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=398.21 Aligned_cols=488 Identities=20% Similarity=0.180 Sum_probs=303.1
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
+++++|++++|.+... .+..|.++++|++|++++|.++++.+.+|+++++|++|++++|.+.... +..+.++++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~ 103 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA---LGAFSGLSSLQ 103 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCC
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC---HhhhcCccccc
Confidence 4677888888777654 3556777788888888888777777777777788888888777765322 23356777777
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCC-CCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCC----CE
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQG-NFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPL----RE 188 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L----~~ 188 (683)
+|++++|.+....+..++.+ ++|++|++++|.+.+ .+|..+.++++|++|++++| .+....+ .+..+++| +.
T Consensus 104 ~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 104 KLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp EEECTTSCCCCSTTCSCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccCCCcccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhh
Confidence 77777777776655566777 777777777777765 35666777777777777776 4443332 34444444 56
Q ss_pred EECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCccc------cccCCccccCCC--CCC
Q 043978 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHL------TGQLPHHVSGLL--YLT 259 (683)
Q Consensus 189 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l------~~~~~~~l~~l~--~L~ 259 (683)
+++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+ .......+..+. .++
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 6666666665555444443 56666666553221 1122233334443333321111 111111111111 134
Q ss_pred EEEccCC-cCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCC
Q 043978 260 NLDLFGN-SLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338 (683)
Q Consensus 260 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l 338 (683)
.++++++ .+.+..+..+..+++|+.|++++|.+......+..+ +|++|++++|.+. .+|. ..+
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--------------~~l 324 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--------------LKL 324 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--------------CBC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--------------ccc
Confidence 4444444 344444555555555555555555555433333344 5555555555544 2221 234
Q ss_pred CCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCccc
Q 043978 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418 (683)
Q Consensus 339 ~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 418 (683)
++|+.|++++|.+.... ....+++|++|++++|.+...+.. +
T Consensus 325 ~~L~~L~l~~n~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~-----------~--------------------- 366 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAF------SEVDLPSLEFLDLSRNGLSFKGCC-----------S--------------------- 366 (570)
T ss_dssp SSCCEEEEESCBSCCBC------CCCBCTTCCEEECCSSCCBEEEEE-----------E---------------------
T ss_pred cccCEEeCcCCcccccc------ccccCCCCCEEeCcCCccCccccc-----------c---------------------
Confidence 44555555555432211 012344444444444444322100 0
Q ss_pred ccCCCCCCCceEEeCCCCCCCccC--CCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhhhhcc
Q 043978 419 HIALHPWKNIRTLDLRNNKIQGSI--LVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495 (683)
Q Consensus 419 ~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 495 (683)
..+..+++|+.|++++|.+.+.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+.
T Consensus 367 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 445 (570)
T 2z63_A 367 -QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445 (570)
T ss_dssp -HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred -ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence 00123445555555555444322 2345667777777777776555 5688899999999999999866776666665
Q ss_pred CcccEEECCCCccc-ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEE
Q 043978 496 TQLITLHLKNNSLE-GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574 (683)
Q Consensus 496 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 574 (683)
+|++|++++|++. +..|..|..+++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 446 -~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 446 -SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp -TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred -cCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence 9999999999987 56788999999999999999999988899999999999999999999988888899999999999
Q ss_pred ccCCcCcccCC
Q 043978 575 LRSNRFYGPLC 585 (683)
Q Consensus 575 l~~n~l~~~~~ 585 (683)
+++|++.+..+
T Consensus 525 l~~N~~~~~~~ 535 (570)
T 2z63_A 525 LHTNPWDCSCP 535 (570)
T ss_dssp CCSSCBCCCTT
T ss_pred ecCCcccCCCc
Confidence 99999987654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=397.73 Aligned_cols=491 Identities=17% Similarity=0.188 Sum_probs=310.2
Q ss_pred CCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEE
Q 043978 62 LTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDL 141 (683)
Q Consensus 62 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L 141 (683)
..+.+.+++.++.+ |..+. ++|++|++++|.++... +..+.++++|++|++++|.+.+..+..|..+ ++|++|
T Consensus 7 ~~~c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L 79 (549)
T 2z81_A 7 SGVCDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHL 79 (549)
T ss_dssp TSEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEEC---SSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEE
T ss_pred CceEECCCCccccc-cccCC--CCccEEECcCCccCccC---hhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEE
Confidence 33456677777655 33332 67777777777665322 2235667777777777777776666666666 677777
Q ss_pred EcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCccc
Q 043978 142 DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFM 221 (683)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 221 (683)
++++|++.+..+..++.+++|++|++++| .+... ..|..+.++++|++|++++|.+.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~----------------------~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTL----------------------GVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSS----------------------CSSCSCTTCTTCCEEEEEESSSC
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCC-ccccc----------------------chhhhhhccCCccEEECCCCccc
Confidence 77777776555555666666666666666 33321 12334444555555555555422
Q ss_pred ccC-CCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC----
Q 043978 222 GSI-PTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI---- 296 (683)
Q Consensus 222 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~---- 296 (683)
+.+ +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|++.+..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence 222 234555555555555555555555555555555666666655554222222234566666666666665421
Q ss_pred CCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccc--ccccccCCCCccEEEc
Q 043978 297 DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSG--NIDIKYSLPSLLKLSF 374 (683)
Q Consensus 297 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~~~~~~~~L~~L~l 374 (683)
+....+++|+.|++++|.+.+..+..+.. .+..+++|+.+++++|.+..+.... .......+++++.|++
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLK--------LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHG--------GGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred chhhhhhcccceeccccccchhHHHHHHH--------Hhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 11225677888888888776544443322 3456778888888888765542211 1122346677788888
Q ss_pred ccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEc
Q 043978 375 SNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLV 454 (683)
Q Consensus 375 ~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 454 (683)
.++.+.....+ ..++. .+...++|+.|++++|.++.++... +..+++|++|++
T Consensus 289 ~~~~i~~~~~~--------~~l~~-~~~~~~~L~~L~l~~n~l~~ip~~~------------------~~~l~~L~~L~L 341 (549)
T 2z81_A 289 RRLHIPQFYLF--------YDLST-VYSLLEKVKRITVENSKVFLVPCSF------------------SQHLKSLEFLDL 341 (549)
T ss_dssp ESCBCSCGGGS--------CCCCH-HHHHSTTCCEEEEESSCCCCCCHHH------------------HHHCTTCCEEEC
T ss_pred cccccchhhhc--------ccchh-hhhhcccceEEEeccCccccCCHHH------------------HhcCccccEEEc
Confidence 77765543211 00000 0122345666666665555433210 012445555555
Q ss_pred cCCcccCCCC---ccccCCCCCCEEEcCCCcCCCCCC---hhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 455 SNNKLSGQIP---PYICSLSSLKYLSLSHNNLSGTIP---PCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 455 ~~n~i~~~~~---~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
++|.+.+..| ..+..+++|++|++++|.++ .++ ..+..+ ++|++|++++|+++ ..|..+..+++|+.|+++
T Consensus 342 s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECT
T ss_pred cCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccEEECC
Confidence 5555554432 34678899999999999998 444 234554 49999999999998 467788899999999999
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+|++++ +|..+ .++|++|++++|.+++.. ..+++|++|++++|++. .+|. ...+++|++||+++|++++
T Consensus 419 ~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~---~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 419 STGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD---ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC---GGGCTTCCEEECCSSCCCC
T ss_pred CCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC---cccCccCCEEecCCCccCC
Confidence 999984 44443 268999999999998642 57899999999999998 4443 3568999999999999997
Q ss_pred CCcHHHHhcchhhcccccccceee
Q 043978 609 FLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 609 ~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
..| ..|..+++|+.+++++|++.
T Consensus 488 ~~~-~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 488 VPD-GIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCT-TGGGGCTTCCEEECCSSCBC
T ss_pred cCH-HHHhcCcccCEEEecCCCcc
Confidence 555 78999999999999999975
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=408.62 Aligned_cols=469 Identities=19% Similarity=0.257 Sum_probs=274.5
Q ss_pred CCCCCCcEEEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCC-----------CCCcccCCCCCCCEEeCCCC
Q 043978 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGS-----------RISPEFGRLKELTYLNPSFS 70 (683)
Q Consensus 2 c~~~~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-----------~~~~~~~~l~~L~~L~Ls~~ 70 (683)
|+. .++|+.|+|++ +.+.|.+++ ++.++++|++|+|++|.+... .+|... +..|+ ++++++
T Consensus 77 C~~-~~~V~~L~L~~--~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~ 148 (636)
T 4eco_A 77 LNS-NGRVTGLSLEG--FGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKT 148 (636)
T ss_dssp ECT-TCCEEEEECTT--SCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHH
T ss_pred EcC-CCCEEEEEecC--cccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHh
Confidence 654 37999999999 899999987 899999999999999864111 122221 33455 666666
Q ss_pred CCCCCCCccCcC-CCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcC--CccCCcCChhhhhcCcCCccEEEcCCCc
Q 043978 71 NFGGLVPSEISH-LSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLG--STNLSLIKPFSLLNLSSTMTDLDLSGTR 147 (683)
Q Consensus 71 ~~~~~~~~~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~~L~~L~l~~n~ 147 (683)
.+.+.+|..+.. +..+..+++....+.. .....++.+.+. .|.+++ .|..++++ ++|++|++++|.
T Consensus 149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l-~~L~~L~Ls~n~ 217 (636)
T 4eco_A 149 FVDYDPREDFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITF-VSKAVMRL-TKLRQFYMGNSP 217 (636)
T ss_dssp HTCCCGGGGSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEE-ECGGGGGC-TTCCEEEEESCC
T ss_pred hhccCchhhHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCcc-CCHHHhcc-cCCCEEECcCCc
Confidence 666555555442 1122222222111110 111222222232 356666 46677777 788888888888
Q ss_pred CCCC-----------------CCccCC--CCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc-Ccc-ccCcccc
Q 043978 148 IQGN-----------------FPDQIF--LLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD-FSG-EIPYSIG 205 (683)
Q Consensus 148 i~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~-~~~~~~~ 205 (683)
+++. +|..++ ++++|++|++++| .+.+.+| .+..+++|++|++++|. +++ .+|..+.
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHH
Confidence 7764 777777 7888888888877 5555555 67777777788887777 766 6777666
Q ss_pred CC------CCCCEEEccCCcccccCCC--CCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 043978 206 NL------LFLETVDITYCNFMGSIPT--STGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277 (683)
Q Consensus 206 ~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 277 (683)
.+ ++|++|++++|.+. .+|. .++.+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+.
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~ 373 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC 373 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh
Confidence 65 77888888888777 6676 77777778888887777776666 6777777777788777777 6677777
Q ss_pred CCCC-CcEEEccCCcccCcCCCCCC--CCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccc
Q 043978 278 TLPS-LVSVNLAWNKLTGPIDGFQS--PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSF 354 (683)
Q Consensus 278 ~l~~-L~~L~L~~n~i~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 354 (683)
.+++ |+.|++++|.++..+..+.. +++|++|++++|.+.+.+|.. +... .
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~------------l~~~-----------~---- 426 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN------------FDPL-----------D---- 426 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS------------SCTT-----------C----
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh------------hccc-----------c----
Confidence 7777 77777777777754444443 336777777777776655542 2200 0
Q ss_pred ccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCC
Q 043978 355 TSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLR 434 (683)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 434 (683)
.....+++|+.|++++|.+..+|..+ +..+++|+.|++++|.++.++...+..+
T Consensus 427 ------~~~~~~~~L~~L~Ls~N~l~~lp~~~--------------~~~l~~L~~L~Ls~N~l~~i~~~~~~~~------ 480 (636)
T 4eco_A 427 ------PTPFKGINVSSINLSNNQISKFPKEL--------------FSTGSPLSSINLMGNMLTEIPKNSLKDE------ 480 (636)
T ss_dssp ------SSCCCCCCEEEEECCSSCCCSCCTHH--------------HHTTCCCSEEECCSSCCSBCCSSSSEET------
T ss_pred ------cccccCCCCCEEECcCCccCcCCHHH--------------HccCCCCCEEECCCCCCCCcCHHHhccc------
Confidence 00002334444444444444444322 1334555555555555543322211100
Q ss_pred CCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhh--hccCcccEEECCCCcccccc
Q 043978 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLG--NFTTQLITLHLKNNSLEGHI 512 (683)
Q Consensus 435 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~ 512 (683)
...+.++++|+.|++++|.++ .+|..++ .+. +|+.|++++|++++ +
T Consensus 481 -----------------------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 481 -----------------------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-F 528 (636)
T ss_dssp -----------------------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-C
T ss_pred -----------------------------cccccccCCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-c
Confidence 001112224444444444444 3444433 222 44444444444443 3
Q ss_pred cccccCCCCccEEEc------CCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 513 HDTFENASNIQSFDL------NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 513 ~~~~~~l~~L~~L~L------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
|..+..+++|+.|++ ++|++.+..|..+..+++|++|++++|.+. .+|..+. ++|+.|++++|++.
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 334444444444444 456666666666666666666666666663 4455443 56666666666654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=386.23 Aligned_cols=471 Identities=17% Similarity=0.166 Sum_probs=276.1
Q ss_pred CEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEE
Q 043978 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLD 142 (683)
Q Consensus 63 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~ 142 (683)
++|++++|.++.+ |..+. ++|++|++++|.+. ...+..+.++++|++|++++|.+++..|..|..+ ++|++|+
T Consensus 3 ~~l~ls~n~l~~i-p~~~~--~~L~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-PKDLS--QKTTILNISQNYIS---ELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLD 75 (520)
T ss_dssp CEEECTTSCCSSC-CCSCC--TTCSEEECCSSCCC---CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEE
T ss_pred ceEecCCCCcccc-ccccc--ccccEEECCCCccc---ccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEEe
Confidence 4677777777754 44443 67777777777665 2233445666666666666666666555566666 6666666
Q ss_pred cCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCcc-ccCccccCCCCCCEEEccCCccc
Q 043978 143 LSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSG-EIPYSIGNLLFLETVDITYCNFM 221 (683)
Q Consensus 143 l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 221 (683)
+++|+++ .+|.. .+++|++|++++| .+.+ .+|..++.+++|++|++++|.+.
T Consensus 76 Ls~N~l~-~lp~~--~l~~L~~L~L~~N------------------------~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 76 LSHNKLV-KISCH--PTVNLKHLDLSFN------------------------AFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCSSCCC-EEECC--CCCCCSEEECCSS------------------------CCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred cCCCcee-ecCcc--ccCCccEEeccCC------------------------ccccccchhhhccCCcceEEEecCcccc
Confidence 6666655 23332 4555555555554 4433 23445555555555555555544
Q ss_pred ccCCCCCCCCCCC--CeeeccCccc--cccCCccccCCC-CCCEEEccCCcCcccCCc-cccCCCCCcEEEccCCc----
Q 043978 222 GSIPTSTGNLSKA--TEILFASNHL--TGQLPHHVSGLL-YLTNLDLFGNSLQGKVPS-WLFTLPSLVSVNLAWNK---- 291 (683)
Q Consensus 222 ~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~---- 291 (683)
+ ..+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 129 ~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 205 (520)
T 2z7x_B 129 K---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205 (520)
T ss_dssp G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT
T ss_pred h---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc
Confidence 3 223334444 5555555544 333444333332 122334444444332222 23344555555555543
Q ss_pred ---ccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc-ccccccccccccCCC
Q 043978 292 ---LTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL-SFTSSGNIDIKYSLP 367 (683)
Q Consensus 292 ---i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~~~~~ 367 (683)
+.+.++.+..+++|+.|++++|.+.+..+..+.. . ...++|++|++++|.+. .++..........++
T Consensus 206 ~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--------L-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH--------H-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred cceeecchhhhccccchhhccccccccCHHHHHHHHH--------H-hhhCcccEEEeecccccCccccchhhcccccCc
Confidence 2222223334445555555554443221111100 0 01234555555555543 221110000013455
Q ss_pred CccEEEcccCCCCCcC-hhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCC
Q 043978 368 SLLKLSFSNCNVSEFP-SFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPP 446 (683)
Q Consensus 368 ~L~~L~l~~~~l~~~p-~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 446 (683)
.|+.+++++|.+ .+| .++... ....+|+.|++++|.+..... +..+
T Consensus 277 ~L~~l~l~~n~~-~~p~~~~~~~------------~~~~~L~~L~l~~n~l~~~~~--------------------~~~l 323 (520)
T 2z7x_B 277 ALSIHQVVSDVF-GFPQSYIYEI------------FSNMNIKNFTVSGTRMVHMLC--------------------PSKI 323 (520)
T ss_dssp EEEEEEEEECCC-CSCTHHHHHH------------HHTCCCSEEEEESSCCCCCCC--------------------CSSC
T ss_pred eeEeccccccce-ecchhhhhcc------------cccCceeEEEcCCCccccccc--------------------hhhC
Confidence 555555555555 444 111100 011234455555444433221 1355
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC--CCChhhhhccCcccEEECCCCcccc-cccccccCCCCcc
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG--TIPPCLGNFTTQLITLHLKNNSLEG-HIHDTFENASNIQ 523 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~--~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~ 523 (683)
++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..+. +|++|++++|++.+ .....|..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCC
Confidence 666777777777777778889999999999999999984 3445566655 99999999999998 5555688999999
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
.|++++|++++..|..+. ++|++|++++|+++ .+|.++..+++|++|++++|++.. +|.. .+..+++|++|++++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccEEECcC
Confidence 999999999877766554 79999999999998 677777799999999999999985 4422 467889999999999
Q ss_pred CcCCCCCcHHHH-hcc
Q 043978 604 NEFKDFLPRRNF-TSM 618 (683)
Q Consensus 604 n~~~~~~p~~~~-~~~ 618 (683)
|++.+.++..+| ..+
T Consensus 478 N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 478 NPWDCSCPRIDYLSRW 493 (520)
T ss_dssp SCBCCCHHHHHHHHHH
T ss_pred CCCcccCCchHHHHHH
Confidence 999988886666 444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=378.82 Aligned_cols=512 Identities=21% Similarity=0.170 Sum_probs=352.8
Q ss_pred CCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccE
Q 043978 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~ 140 (683)
.+++|||++|.++++.+.+|.++++|++|++++|.++..+. ..+.++++|++|+|++|.++...+..|.++ ++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L-~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLALGAFSGL-SSLQK 128 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEECGGGGTTC-TTCCE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCCEEEccCCcCCCCCHHHhcCC-CCCCE
Confidence 56677777777766666667777777777777766653222 124666777777777777766666667777 77777
Q ss_pred EEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc-cCC-CCCCCCCCCEEECCCCcCccccCccccCCCC----CCEEE
Q 043978 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG-YLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLF----LETVD 214 (683)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~----L~~L~ 214 (683)
|++++|++++..+..++.+++|++|++++| .+.. ..+ .+..+++|++|++++|.+.+..+..+..+.+ ...++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 777777777655556677777777777777 4332 223 4556677777777777776655555554433 33577
Q ss_pred ccCCcccccCCCCCCCCCCCCeeeccCccccc-cCCccccCCCCCCEEEccCCcC------cccCCccccCCCCCcEEEc
Q 043978 215 ITYCNFMGSIPTSTGNLSKATEILFASNHLTG-QLPHHVSGLLYLTNLDLFGNSL------QGKVPSWLFTLPSLVSVNL 287 (683)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l------~~~~~~~l~~l~~L~~L~L 287 (683)
++.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+.. .......+.....+...++
T Consensus 208 ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 208 LSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp CTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred cccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 77777764444333 33445666666664332 2233455666666555543221 2222233334445555555
Q ss_pred cCCcccC----cCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccc
Q 043978 288 AWNKLTG----PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363 (683)
Q Consensus 288 ~~n~i~~----~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 363 (683)
..+.... ....+....+++.+.+.++.+... ..+.....++.|++.+|.+..++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--------------~~~~~~~~L~~L~l~~~~~~~~~~------- 345 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--------------KDFSYNFGWQHLELVNCKFGQFPT------- 345 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--------------GGGGSCCCCSEEEEESCEESSCCC-------
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc--------------cccccchhhhhhhcccccccCcCc-------
Confidence 4433221 233344566778888777766521 134556778888888887654422
Q ss_pred cCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC-----CCCCCceEEeCCCCCC
Q 043978 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-----HPWKNIRTLDLRNNKI 438 (683)
Q Consensus 364 ~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~L~~L~l~~n~l 438 (683)
..++.|+.+++..+.+...+.. ..+++|+.+++++|.+..... ....+++.++++.+.+
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~----------------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~ 409 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSE----------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCC----------------CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred ccchhhhhcccccccCCCCccc----------------ccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence 2567788888888766543332 567888999999888765422 2567888999988876
Q ss_pred Ccc--CCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcc-cccccc
Q 043978 439 QGS--ILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL-EGHIHD 514 (683)
Q Consensus 439 ~~~--~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~ 514 (683)
... .+..+++|+.++++.++.....+ ..+..+++++.+++++|.+.+..+..+.. .++|+.|++++|.+ ....|.
T Consensus 410 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~-~~~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 410 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECS
T ss_pred ccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc-chhhhhhhhhhcccccccCch
Confidence 643 34467889999999888765544 56888999999999999998555554444 45999999999974 456788
Q ss_pred cccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCC-
Q 043978 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSF- 593 (683)
Q Consensus 515 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l- 593 (683)
.|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|++++|++++..+. .+..+
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~l~~l~ 566 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFP 566 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS--CTTCCC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH--HHHhhh
Confidence 999999999999999999999999999999999999999999998888999999999999999999987663 34555
Q ss_pred CCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 594 QALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 594 ~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
++|++|++++|++.+.+.-.+|..|
T Consensus 567 ~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CcCCEEEeeCCCCcccCCcHHHHHH
Confidence 6899999999999998887777654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=397.71 Aligned_cols=465 Identities=21% Similarity=0.231 Sum_probs=321.6
Q ss_pred CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCcccc---------CCHHHHHccCCCCCEEEcCCccCCcCChhh
Q 043978 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQ---------RTFDLLASNLTKLSLLHLGSTNLSLIKPFS 130 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 130 (683)
.+++.|+|+++.+.+.+|.+++++++|++|++++|.+.... ..+|... +..|+ ++++.+.+.+..+..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47888999998888888888999999999999888652111 0222222 34455 666666666555554
Q ss_pred hhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEcc--CCCCCcccCCCCCCCCCCCEEECCCCcCccc---------
Q 043978 131 LLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLC--GNIHLTGYLPKCNWSSPLRELDLSLSDFSGE--------- 199 (683)
Q Consensus 131 l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~--~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--------- 199 (683)
+..+...+..+++....+.. .....++.+.+. .| .+++..+.+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n-~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccC-CCccCCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 44332333333333222211 011112222222 22 3444222556666666666666666653
Q ss_pred --------cCcccc--CCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc-ccc-cCCccccCC------CCCCEE
Q 043978 200 --------IPYSIG--NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH-LTG-QLPHHVSGL------LYLTNL 261 (683)
Q Consensus 200 --------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L 261 (683)
+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 888888 99999999999999988899999999999999999998 887 778777766 899999
Q ss_pred EccCCcCcccCCc--cccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 262 DLFGNSLQGKVPS--WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 262 ~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
++++|.++ .+|. .+..+++|+.|++++|.+.+.++.+..+++|++|++++|.+. .+|. .+..++
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~------------~l~~l~ 376 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPA------------NFCGFT 376 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCT------------TSEEEC
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccH------------hhhhhc
Confidence 99999998 7888 899999999999999999854557778889999999999887 6665 456677
Q ss_pred C-CCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCccc
Q 043978 340 N-LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLT 418 (683)
Q Consensus 340 ~-L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 418 (683)
+ |++|++++|.++.++.. +.. ..+++|+.|++++|.++
T Consensus 377 ~~L~~L~Ls~N~l~~lp~~-----~~~------------------------------------~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 377 EQVENLSFAHNKLKYIPNI-----FDA------------------------------------KSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp TTCCEEECCSSCCSSCCSC-----CCT------------------------------------TCSSCEEEEECCSSCTT
T ss_pred ccCcEEEccCCcCcccchh-----hhh------------------------------------cccCccCEEECcCCcCC
Confidence 7 88888888876544321 111 11223444444444443
Q ss_pred ccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC--
Q 043978 419 HIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT-- 496 (683)
Q Consensus 419 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-- 496 (683)
+..+..+... .......++|++|++++|.+....+..+..+++|++|++++|.+. .+|...+....
T Consensus 416 ~~~p~~l~~~-----------~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 416 SVDGKNFDPL-----------DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp TTTTCSSCTT-----------CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred Ccchhhhccc-----------ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 3222111100 000001234455555555555444455667899999999999998 78876655433
Q ss_pred -----cccEEECCCCccccccccccc--CCCCccEEEcCCCcccccCchhhhcCCCCcEEEc------cCCcCCccCCcc
Q 043978 497 -----QLITLHLKNNSLEGHIHDTFE--NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNV------GNNMINDTFPCW 563 (683)
Q Consensus 497 -----~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l------~~n~l~~~~~~~ 563 (683)
+|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|.+.+.+|.+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 8999999999999 4556665 89999999999999996 7888999999999999 567788889999
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+..+++|++|++++|++ +.+|... . ++|++||+++|++..
T Consensus 562 l~~l~~L~~L~Ls~N~l-~~ip~~~--~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDI-RKVNEKI--T--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC--C--TTCCEEECCSCTTCE
T ss_pred HhcCCCCCEEECCCCcC-CccCHhH--h--CcCCEEECcCCCCcc
Confidence 99999999999999999 5555432 2 799999999998874
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=397.00 Aligned_cols=447 Identities=19% Similarity=0.275 Sum_probs=274.1
Q ss_pred CCCCCCcEEEEECCCCCCCcceeecCCCcccccccCCeeeC-CCCCCCCCCCCcccCCCCC---CC-----EEe------
Q 043978 2 CDNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNL-AFNNFLGSRISPEFGRLKE---LT-----YLN------ 66 (683)
Q Consensus 2 c~~~~~~v~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L-s~n~~~~~~~~~~~~~l~~---L~-----~L~------ 66 (683)
|+. +++|+.|+|++ +.+.|.+++ ++.++++|++|+| ++|.+.+. .+ +..... +. .+.
T Consensus 319 C~~-~~~V~~L~Ls~--~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~--~~~~~~~~~l~~~~l~~lr~~~~~~ 390 (876)
T 4ecn_A 319 LDN-NGRVTGLSLAG--FGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RL--FGDEELTPDMSEERKHRIRMHYKKM 390 (876)
T ss_dssp ECT-TSCEEEEECTT--TCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TC--BTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred ecC-CCCEEEEECcc--CCCCCcCch--HHhccccceEeeeccccccccc-cc--ccccccccccchhHHHHHHHhhhhh
Confidence 543 58999999999 999999998 9999999999999 77765433 11 110000 00 000
Q ss_pred ---C-CCCCCCC-----------CCCccCcCCCCCCEEeCCC--CcCccccCCHHHHHccCCCCCEEEcCCccCCc----
Q 043978 67 ---P-SFSNFGG-----------LVPSEISHLSKLTHLGLSC--RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSL---- 125 (683)
Q Consensus 67 ---L-s~~~~~~-----------~~~~~~~~l~~L~~L~ls~--n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~---- 125 (683)
. ....+.+ ..+........++.+.+.. |.++ + +|..+.++++|++|++++|.+++
T Consensus 391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~---~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~ 466 (876)
T 4ecn_A 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT---F-ISKAIQRLTKLQIIYFANSPFTYDNIA 466 (876)
T ss_dssp HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEE---E-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCccc---c-hhHHHhcCCCCCEEECcCCcCCCCccc
Confidence 0 0000000 0000111122233333332 3443 1 55566777777777777777776
Q ss_pred -------------CChhhhh--cCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc-cCC--------CCC
Q 043978 126 -------------IKPFSLL--NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG-YLP--------KCN 181 (683)
Q Consensus 126 -------------~~~~~l~--~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~--------~~~ 181 (683)
..|..++ ++ ++|++|++++|.+.+.+|..+..+++|++|++++|..+.+ .+| .+.
T Consensus 467 ~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 467 VDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred ccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 2566665 78 8888888888888888888888888888888888832554 333 334
Q ss_pred CCCCCCEEECCCCcCccccCc--cccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCC-C
Q 043978 182 WSSPLRELDLSLSDFSGEIPY--SIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLY-L 258 (683)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L 258 (683)
.+++|+.|++++|.+. .+|. .+.++++|+.|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |
T Consensus 546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L 621 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQV 621 (876)
T ss_dssp TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTC
T ss_pred ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccC
Confidence 5568888888888888 7787 8888888888888888888 666 7888888888888888888 67777888888 8
Q ss_pred CEEEccCCcCcccCCccccCCCC--CcEEEccCCcccCcCCCCC------CCCCCcEEECCCCcCcccCCccchhccCcc
Q 043978 259 TNLDLFGNSLQGKVPSWLFTLPS--LVSVNLAWNKLTGPIDGFQ------SPNSLEEVHLEKNQIHGTIPSSLFQLCGTI 330 (683)
Q Consensus 259 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~~------~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~ 330 (683)
++|++++|.+. .+|..+..++. |+.|++++|.+.+.++.+. ..++|+.|++++|.+. .+|..
T Consensus 622 ~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~-------- 691 (876)
T 4ecn_A 622 EGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTE-------- 691 (876)
T ss_dssp CEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHH--------
T ss_pred CEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHH--------
Confidence 88888888888 67777666543 8888888888776444332 3447777777777776 44442
Q ss_pred cccccCCCCCCCEEeCCCCCcccccccccccc---ccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcC
Q 043978 331 RFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDI---KYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSL 407 (683)
Q Consensus 331 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~---~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L 407 (683)
.+..+++|+.|++++|.+..++....... ...+++|+.|++++|++..+|..+.. ..+++|
T Consensus 692 ---~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~-------------~~l~~L 755 (876)
T 4ecn_A 692 ---LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-------------TTLPYL 755 (876)
T ss_dssp ---HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST-------------TTCTTC
T ss_pred ---HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh-------------ccCCCc
Confidence 23466777777777777665543211110 11233666666666666655543210 144555
Q ss_pred cEEECCCCcccccCC--CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC
Q 043978 408 IDLDLSNNFLTHIAL--HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~ 485 (683)
+.|++++|.+++++. ..+++|+.|++++|+ ++++|.+.+.+|..+..+++|+.|++++|.+ +
T Consensus 756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~---------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR---------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp CEEECCSSCCSSCCCGGGGCTTCCEEECCCCB---------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred CEEEeCCCCCCccchhhhcCCCCCEEECCCCC---------------CcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence 555555555554321 133444444444443 2233444444444455555555555555555 2
Q ss_pred CCChhhhhccCcccEEECCCCcccc
Q 043978 486 TIPPCLGNFTTQLITLHLKNNSLEG 510 (683)
Q Consensus 486 ~~~~~~~~~~~~L~~L~l~~n~l~~ 510 (683)
.+|..+. ++|+.|++++|++..
T Consensus 820 ~Ip~~l~---~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 820 KVDEKLT---PQLYILDIADNPNIS 841 (876)
T ss_dssp BCCSCCC---SSSCEEECCSCTTCE
T ss_pred ccCHhhc---CCCCEEECCCCCCCc
Confidence 4444322 244444444444443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=390.47 Aligned_cols=441 Identities=19% Similarity=0.208 Sum_probs=279.8
Q ss_pred CCccEEEcCCCcCCCCCCccCCCCCCCcEEEc-cCCCCCcccCC-C----------------------------------
Q 043978 136 STMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL-CGNIHLTGYLP-K---------------------------------- 179 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l-~~n~~~~~~~~-~---------------------------------- 179 (683)
.+++.|+|+++.+.+.+|..++++++|++|++ ++| .+.+..+ .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 46777888888887777777888888888888 555 3333211 0
Q ss_pred ---------------C--CCCCCCCEEECCC--CcCccccCccccCCCCCCEEEccCCcccc-----------------c
Q 043978 180 ---------------C--NWSSPLRELDLSL--SDFSGEIPYSIGNLLFLETVDITYCNFMG-----------------S 223 (683)
Q Consensus 180 ---------------~--~~~~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~ 223 (683)
+ .....++.+.+.. |.+++ +|..+.++++|++|++++|.+.+ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 0111222222222 44554 66666677777777777776665 2
Q ss_pred CCCCCC--CCCCCCeeeccCccccccCCccccCCCCCCEEEccCCc-Ccc-cCCccccCCCCCcEEEccCCcccCcCCCC
Q 043978 224 IPTSTG--NLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNS-LQG-KVPSWLFTLPSLVSVNLAWNKLTGPIDGF 299 (683)
Q Consensus 224 ~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 299 (683)
+|..++ .+++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..+..++ ..+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------~~~ 544 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA----------------DDE 544 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH----------------HCT
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh----------------hcc
Confidence 555554 55555555555555555555555555555555555555 544 4444333222 011
Q ss_pred CCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCC
Q 043978 300 QSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNV 379 (683)
Q Consensus 300 ~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l 379 (683)
..+++|++|++++|.+. .+|.. ..+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+
T Consensus 545 ~~l~~L~~L~Ls~N~L~-~ip~~----------~~l~~L~~L~~L~Ls~N~l~~lp------~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 545 DTGPKIQIFYMGYNNLE-EFPAS----------ASLQKMVKLGLLDCVHNKVRHLE------AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp TTTTTCCEEECCSSCCC-BCCCH----------HHHTTCTTCCEEECTTSCCCBCC------CCCTTSEESEEECCSSCC
T ss_pred cccCCccEEEeeCCcCC-ccCCh----------hhhhcCCCCCEEECCCCCcccch------hhcCCCcceEEECcCCcc
Confidence 23334444455444444 33320 02344455555555555543321 233445555555555555
Q ss_pred CCcChhhhhccccccccCCCcccCCCc-CcEEECCCCcccccCCC--C--CCCceEEeCCCCCCCccCCC--------CC
Q 043978 380 SEFPSFLRNSEKIHGRISKHDSKGWKS-LIDLDLSNNFLTHIALH--P--WKNIRTLDLRNNKIQGSILV--------PP 446 (683)
Q Consensus 380 ~~~p~~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~--~--~~~L~~L~l~~n~l~~~~~~--------~~ 446 (683)
..+|..+ ..+++ |+.|++++|.++.++.. . .++|+.|++++|++.+..+. ..
T Consensus 608 ~~lp~~l---------------~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 608 EEIPEDF---------------CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SCCCTTS---------------CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred ccchHHH---------------hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 4444321 33444 55555555555543221 1 12366666666666553321 23
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC-------cccEEECCCCccccccccccc--
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT-------QLITLHLKNNSLEGHIHDTFE-- 517 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~-- 517 (683)
++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..++.... +|+.|++++|+++ .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 47888888888888443344568999999999999998 78877665432 8999999999998 4566665
Q ss_pred CCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC------CcCCccCCccccCCCCCCEEEccCCcCcccCCCCcccc
Q 043978 518 NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN------NMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTF 591 (683)
Q Consensus 518 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 591 (683)
.+++|+.|+|++|++++ +|..+..+++|+.|++++ |.+.+.+|.+|..+++|+.|+|++|++ +.+|...
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l--- 825 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--- 825 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC---
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh---
Confidence 89999999999999996 688899999999999976 788888999999999999999999999 5666432
Q ss_pred CCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeeecc
Q 043978 592 SFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYMG 635 (683)
Q Consensus 592 ~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~~~ 635 (683)
.++|+.||+++|++... +...|.....+..+.+.+|+.+.|.
T Consensus 826 -~~~L~~LdLs~N~l~~i-~~~~~~~~~~~~~~~L~~n~~~~I~ 867 (876)
T 4ecn_A 826 -TPQLYILDIADNPNISI-DVTSVCPYIEAGMYVLLYDKTQDIR 867 (876)
T ss_dssp -CSSSCEEECCSCTTCEE-ECGGGHHHHHTTCCEEECCTTSEEE
T ss_pred -cCCCCEEECCCCCCCcc-ChHHccccccchheeecCCCccccC
Confidence 26999999999999854 4466777777888888888776654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=376.13 Aligned_cols=511 Identities=18% Similarity=0.165 Sum_probs=369.1
Q ss_pred CEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEE
Q 043978 87 THLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLY 166 (683)
Q Consensus 87 ~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 166 (683)
++.+.++..++..+..+| +++++|+|++|.++.+.+.+|.++ ++|++|+|++|++++..+++|.++++|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp------~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp TEEECTTSCCSSCCSSSC------TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCCcCccCCCCC------cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEE
Confidence 455666655553333332 468888888888888877888888 8888888888888876677788888888888
Q ss_pred ccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCccc
Q 043978 167 LCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHL 244 (683)
Q Consensus 167 l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l 244 (683)
+++| .+....+ .+.++++|++|++++|.+.+..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|++
T Consensus 107 Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 107 LTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 8888 6665554 57788888888888888876666678888888888888888765 3466777788888888888888
Q ss_pred cccCCccccCCCC----CCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC--cCCCCCCCCCCcEEECCCCcCcc-
Q 043978 245 TGQLPHHVSGLLY----LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG--PIDGFQSPNSLEEVHLEKNQIHG- 317 (683)
Q Consensus 245 ~~~~~~~l~~l~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~~~~L~~L~L~~n~i~~- 317 (683)
.+..+..+..+.+ ...++++.|.+....+. ......++.+++.+|.... ....+..+..++...+..+....
T Consensus 186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 264 (635)
T 4g8a_A 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 264 (635)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred cccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc
Confidence 7777766655433 34677888887744443 3334456777777764331 11111233444433332111110
Q ss_pred -----cCCccchhc---------------cCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccC
Q 043978 318 -----TIPSSLFQL---------------CGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377 (683)
Q Consensus 318 -----~~~~~~~~~---------------~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~ 377 (683)
.....+... ........+..+.+++.+++.++.+..+. .+.....++.|++.+|
T Consensus 265 ~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~ 338 (635)
T 4g8a_A 265 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK------DFSYNFGWQHLELVNC 338 (635)
T ss_dssp CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG------GGGSCCCCSEEEEESC
T ss_pred cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc------ccccchhhhhhhcccc
Confidence 000000000 00001123445567777887777755442 2335667888888888
Q ss_pred CCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC-CCCCCceEEeCCCCCCCccCC-----CCCCCCcE
Q 043978 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL-HPWKNIRTLDLRNNKIQGSIL-----VPPPSTEV 451 (683)
Q Consensus 378 ~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~ 451 (683)
.+..++. ..++.|+.+++..|....... ..+++|+.+++++|.+..... ....++++
T Consensus 339 ~~~~~~~-----------------~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 401 (635)
T 4g8a_A 339 KFGQFPT-----------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY 401 (635)
T ss_dssp EESSCCC-----------------CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCE
T ss_pred cccCcCc-----------------ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhh
Confidence 7765543 456778888888887765533 367899999999998864322 25678999
Q ss_pred EEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCc
Q 043978 452 FLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNK 531 (683)
Q Consensus 452 L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 531 (683)
+++..+.+.. .+..+..+++|+.++++++......+...+....+++.+++++|.+....+..+..+++|+.|++++|.
T Consensus 402 L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 402 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp EECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred hhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 9999988874 455678899999999999887755555444445599999999999999999999999999999999998
Q ss_pred cc-ccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCC
Q 043978 532 FE-GSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFL 610 (683)
Q Consensus 532 l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 610 (683)
+. ...|..|..+++|++|++++|++++..|..|+++++|++|+|++|++++..+ ..+..+++|++||+++|++++..
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--FPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC--GGGTTCTTCCEEECTTSCCCBCC
T ss_pred cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh--hHHhCCCCCCEEECCCCcCCCCC
Confidence 54 4578889999999999999999999999999999999999999999987655 45678999999999999999766
Q ss_pred cHHHHhcc-hhhcccccccceeee
Q 043978 611 PRRNFTSM-EAMKNVDEQATRLQY 633 (683)
Q Consensus 611 p~~~~~~~-~~L~~l~l~~n~~~~ 633 (683)
| ..|..+ ++|+.+++++|++.-
T Consensus 559 ~-~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 559 K-QELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp S-SCTTCCCTTCCEEECTTCCBCC
T ss_pred H-HHHHhhhCcCCEEEeeCCCCcc
Confidence 6 677777 689999999999863
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=377.30 Aligned_cols=463 Identities=19% Similarity=0.179 Sum_probs=247.4
Q ss_pred EEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEE
Q 043978 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89 (683)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 89 (683)
+.||+++ +.++ .++. .+. ++|++|++++|.+.+. .+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 3 ~~l~ls~--n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSK--NGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTT--SCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCC--CCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 3566776 6665 3444 333 6677777777766544 34566777777777777777766666667777777777
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcC-ChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCC--cEEE
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLI-KPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNL--RVLY 166 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~ 166 (683)
++++|.++. +|.. .+++|++|++++|.+++. .|..++.+ ++|++|++++|.+.+ ..+..+++| ++|+
T Consensus 75 ~Ls~N~l~~----lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l-~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 75 DLSHNKLVK----ISCH--PTVNLKHLDLSFNAFDALPICKEFGNM-SQLKFLGLSTTHLEK---SSVLPIAHLNISKVL 144 (520)
T ss_dssp ECCSSCCCE----EECC--CCCCCSEEECCSSCCSSCCCCGGGGGC-TTCCEEEEEESSCCG---GGGGGGTTSCEEEEE
T ss_pred ecCCCceee----cCcc--ccCCccEEeccCCccccccchhhhccC-CcceEEEecCcccch---hhccccccceeeEEE
Confidence 777766652 2222 456666666666666553 34556665 666666666665553 233444444 5555
Q ss_pred ccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCC-CCCEEEccCCcccccCC-CCCCCCCCCCeeeccCcc-
Q 043978 167 LCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLL-FLETVDITYCNFMGSIP-TSTGNLSKATEILFASNH- 243 (683)
Q Consensus 167 l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~- 243 (683)
+++| .+.+ .+..|..+..+. ....+++++|.+.+..+ ..+..+++|+.+++++|.
T Consensus 145 l~~n-~l~~---------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 202 (520)
T 2z7x_B 145 LVLG-ETYG---------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE 202 (520)
T ss_dssp EEEC-TTTT---------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred eecc-cccc---------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence 5555 2200 223333333322 11123344444333222 233444555555555443
Q ss_pred ------ccccCCccccCCCCCCEEEccCCcCcccCCcccc---CCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCc
Q 043978 244 ------LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF---TLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 244 ------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~ 314 (683)
+.+.++ .+..+++|+.|++++|.+.+..+..+. ..++|+.|++++| .
T Consensus 203 ~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n-----------------------~ 258 (520)
T 2z7x_B 203 DNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV-----------------------K 258 (520)
T ss_dssp TTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE-----------------------E
T ss_pred ccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc-----------------------c
Confidence 222222 344445555555554444322111110 0223444444444 3
Q ss_pred CcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhcccccc
Q 043978 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHG 394 (683)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~ 394 (683)
+.+.+|..++.. ....+++|+.+++++|.+ .++... +......++|+.|++++|.+..++..
T Consensus 259 l~~~~p~~~~~~-------~~~~l~~L~~l~l~~n~~-~~p~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~--------- 320 (520)
T 2z7x_B 259 LQGQLDFRDFDY-------SGTSLKALSIHQVVSDVF-GFPQSY-IYEIFSNMNIKNFTVSGTRMVHMLCP--------- 320 (520)
T ss_dssp EESCCCCCCCCC-------CSCCCCEEEEEEEEECCC-CSCTHH-HHHHHHTCCCSEEEEESSCCCCCCCC---------
T ss_pred ccCccccchhhc-------ccccCceeEeccccccce-ecchhh-hhcccccCceeEEEcCCCccccccch---------
Confidence 333333311100 013444444555544443 221100 00000113455555555554432210
Q ss_pred ccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCC
Q 043978 395 RISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLS 471 (683)
Q Consensus 395 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~ 471 (683)
..+++|++|++++|.+++..+ ..+++|+.|++++|++++. +.+|..+..++
T Consensus 321 -------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-------------------~~~~~~~~~l~ 374 (520)
T 2z7x_B 321 -------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL-------------------SKIAEMTTQMK 374 (520)
T ss_dssp -------SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBH-------------------HHHHHHHTTCT
T ss_pred -------hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcc-------------------ccchHHHhhCC
Confidence 345666666666666655322 2334444444444444320 02345577778
Q ss_pred CCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEc
Q 043978 472 SLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNV 551 (683)
Q Consensus 472 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 551 (683)
+|++|++++|.+.+.+|...+...++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNV 451 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEEC
Confidence 8888888888887546665444445888888888888766665553 68888888888887 56766778888888888
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 552 GNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 552 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++|++++..+..|..+++|++|++++|++.+.
T Consensus 452 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 452 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 88888854333477888888888888887654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=364.62 Aligned_cols=447 Identities=22% Similarity=0.214 Sum_probs=253.4
Q ss_pred CCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEEC
Q 043978 112 KLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDL 191 (683)
Q Consensus 112 ~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 191 (683)
+|++|++++|.+++..+..|..+ ++|++|++++|++++..|+.+..+++|++|++++| .+.. ++.. .+++|++|++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~-lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQN-ISCC-PMASLRHLDL 128 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCE-ECSC-CCTTCSEEEC
T ss_pred CcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCc-cCcc-ccccCCEEEC
Confidence 34444444444444444445555 55555555555555444455555555555555555 3332 2211 4555555555
Q ss_pred CCCcCcc-ccCccccCCCCCCEEEccCCcccccCCCCCCCCCCC--CeeeccCccc--cccCCccccCCC-CCCEEEccC
Q 043978 192 SLSDFSG-EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKA--TEILFASNHL--TGQLPHHVSGLL-YLTNLDLFG 265 (683)
Q Consensus 192 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~l~~ 265 (683)
++|.+.+ ..|..|.++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..+..+..+. ..-.+++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 5555553 234566666666666666666653 233333444 6666666665 545555554433 111335555
Q ss_pred CcCcccCCc-cccCCCCCcEEEccCCcc-----cCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 266 NSLQGKVPS-WLFTLPSLVSVNLAWNKL-----TGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 266 n~l~~~~~~-~l~~l~~L~~L~L~~n~i-----~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
|.+.+.++. .+..+++|+.+++++|+. ....+.+..++.|+.++++++.+.+.....+. .....+
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~---------~~~~~~ 276 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF---------QFFWPR 276 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH---------HHHTTS
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH---------Hhhhcc
Confidence 554433332 223345555555555431 11111222334444444444433321100000 001112
Q ss_pred CCCEEeCCCCCcc-ccccccccccccCCCCccEEEcccCCCCCcCh-hhhhccccccccCCCcccCCCcCcEEECCCCcc
Q 043978 340 NLQFLDLSNNNLL-SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPS-FLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFL 417 (683)
Q Consensus 340 ~L~~L~l~~n~l~-~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 417 (683)
+|++|++++|.+. .++..........++.|+.+++..+.+ .+|. ++... .
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~------------~--------------- 328 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSV------------F--------------- 328 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHH------------H---------------
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhh------------h---------------
Confidence 4444444444432 111100000001222222222222222 2221 00000 0
Q ss_pred cccCCCCCCCceEEeCCCCCCCccCC-CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCC---hhhhh
Q 043978 418 THIALHPWKNIRTLDLRNNKIQGSIL-VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIP---PCLGN 493 (683)
Q Consensus 418 ~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~ 493 (683)
...+++.|++++|.+....+ ..+++|++|++++|.+.+..|..+..+++|++|++++|++. .++ ..+..
T Consensus 329 ------~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~ 401 (562)
T 3a79_B 329 ------AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKN 401 (562)
T ss_dssp ------HTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTT
T ss_pred ------ccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcC
Confidence 01335555555555544333 45677778888888888778889999999999999999998 444 34555
Q ss_pred ccCcccEEECCCCcccc-cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCE
Q 043978 494 FTTQLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKI 572 (683)
Q Consensus 494 ~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 572 (683)
+. +|++|++++|++++ ..+..|..+++|+.|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|++
T Consensus 402 l~-~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 402 MS-SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp CT-TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CC-CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 54 99999999999998 5556789999999999999999876655443 68999999999998 57776779999999
Q ss_pred EEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 573 LILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 573 L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
|++++|+++. +|.. .+..+++|++|++++|++.+.+|..+|
T Consensus 478 L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 478 LNVASNQLKS-VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp EECCSSCCCC-CCTT-STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred EECCCCCCCC-CCHH-HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 9999999985 4422 467899999999999999998886666
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=352.37 Aligned_cols=456 Identities=19% Similarity=0.197 Sum_probs=295.2
Q ss_pred CCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCE
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRE 188 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 188 (683)
+...++++++++.++.+ |..+ +++|++|++++|.+.+..+..+..+++|++|++++| .+.+..+ .+..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~~i-p~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV-PKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCSC-CTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCccC-CCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCE
Confidence 34447777877777765 3333 378888888888888766678888888888888887 5555544 5666777777
Q ss_pred EECCCCcCccccCccccCCCCCCEEEccCCcccc-cCCCCCCCCCCCCeeeccCccccccCCccccCCCCC--CEEEccC
Q 043978 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMG-SIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYL--TNLDLFG 265 (683)
Q Consensus 189 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~ 265 (683)
|++++|.+. .+|.. .+++|++|++++|.+.+ ..|..|+.+++|++|++++|.+.+.. +..+++| ++|++++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeec
Confidence 777777766 44544 66777777777776664 23456666666666666666665432 3333333 6666666
Q ss_pred CcC--cccCCccccCCC-CCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCC
Q 043978 266 NSL--QGKVPSWLFTLP-SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQ 342 (683)
Q Consensus 266 n~l--~~~~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~ 342 (683)
|.+ ++..|..+..+. ....+++++|.+.. .++. ..+..+++|+
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~-----------------------~~~~-----------~~~~~l~~L~ 224 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFS-----------------------VQVN-----------MSVNALGHLQ 224 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCC-----------------------CCCE-----------EEESSEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchh-----------------------hhhh-----------hcccccceEE
Confidence 666 555555554432 11133444444333 2221 1233444555
Q ss_pred EEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC
Q 043978 343 FLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL 422 (683)
Q Consensus 343 ~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 422 (683)
.+++++|....-...+....+..++.|+.++++++.+..-. +. .++.. ...++|++|++++|.+++..+
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~--------~~-~~~~~--~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC--------SV-KLFQF--FWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH--------HH-HHHHH--HTTSSEEEEEEEEEEECSCCC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH--------HH-HHHHh--hhcccccEEEEeccEeecccc
Confidence 55555543100000111112234445555555544433100 00 00000 112356666666666653322
Q ss_pred --------CCCCCceEEeCCCCCCCccCCC-------CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCC
Q 043978 423 --------HPWKNIRTLDLRNNKIQGSILV-------PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTI 487 (683)
Q Consensus 423 --------~~~~~L~~L~l~~n~l~~~~~~-------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~ 487 (683)
..++.|+.++++.+.+ ..+. ...++++|++++|.+.... ....+++|++|++++|.+.+.+
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTT
T ss_pred chhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccch
Confidence 2233344444444544 1110 1257999999999987432 2268899999999999999778
Q ss_pred ChhhhhccCcccEEECCCCccccc--ccccccCCCCccEEEcCCCcccccCc-hhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 488 PPCLGNFTTQLITLHLKNNSLEGH--IHDTFENASNIQSFDLNCNKFEGSLP-RSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 488 ~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
|..+..+. +|++|++++|++++. .+..|.++++|+.|++++|++++..| ..+..+++|++|++++|.+++..|..+
T Consensus 370 ~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 370 FQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 88777765 999999999999974 35679999999999999999997344 568899999999999999987766654
Q ss_pred cCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 565 GSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 565 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
. ++|++|++++|++.. +|. ....+++|++|++++|+++ .+|...|..+++|+.+++++|++.
T Consensus 449 ~--~~L~~L~L~~N~l~~-ip~--~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIMS-IPK--DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp C--TTCSEEECCSSCCCC-CCT--TTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBC
T ss_pred c--CcCCEEECCCCcCcc-cCh--hhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcC
Confidence 3 799999999999984 443 3348999999999999999 578667999999999999999985
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=339.09 Aligned_cols=415 Identities=21% Similarity=0.237 Sum_probs=204.0
Q ss_pred CCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEE
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL 189 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 189 (683)
.++|++|++++|.+ +..|.+++++ ++|++|++++|.+.+.+|..++.+++|+.+++.+| . ..++++|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c-~----------~~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENV-KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-L----------DRQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH-H----------HHTCSEE
T ss_pred cccchhhhcccCch-hhCChhHhcc-cchhhhhccCCcccccCCcccccchhcchhhhhhh-h----------ccCCCEE
Confidence 35566666666666 3345566666 66666666666666666666666666655444444 1 1235555
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCc
Q 043978 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 190 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++++|.+++ +|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+.+. +.. .++|++|++++|.++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC
Confidence 555555542 2321 2456666666665554 3332 25566666666655532 111 145666666666666
Q ss_pred ccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 270 GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 270 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
+ +| .+..+++|+.|++++|++++.... ..+|++|++++|.+++ +| .+..+++|+.|++++|
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-------------~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-------------ELQNLPFLTAIYADNN 205 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-------------CCTTCTTCCEEECCSS
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-------------cccCCCCCCEEECCCC
Confidence 3 44 366666666666666666543221 2466666666666653 22 2556666777777777
Q ss_pred CccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCce
Q 043978 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIR 429 (683)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 429 (683)
.+..++. ..++|++|++++|.+..+|.+ ..+++|+.|++++|++++++. .+++|+
T Consensus 206 ~l~~l~~--------~~~~L~~L~l~~n~l~~lp~~----------------~~l~~L~~L~l~~N~l~~l~~-~~~~L~ 260 (454)
T 1jl5_A 206 SLKKLPD--------LPLSLESIVAGNNILEELPEL----------------QNLPFLTTIYADNNLLKTLPD-LPPSLE 260 (454)
T ss_dssp CCSSCCC--------CCTTCCEEECCSSCCSSCCCC----------------TTCTTCCEEECCSSCCSSCCS-CCTTCC
T ss_pred cCCcCCC--------CcCcccEEECcCCcCCccccc----------------CCCCCCCEEECCCCcCCcccc-cccccC
Confidence 6554432 124677777777766655532 556677777777777665432 346677
Q ss_pred EEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc
Q 043978 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 509 (683)
.|++++|++++ .+..+++|++|++++|.+.+. +. ..++|+.|++++|.+. .++ ..+++|+.|++++|+++
T Consensus 261 ~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~-~i~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 261 ALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIR-SLC----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp EEECCSSCCSC-CCCCCTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCS-EEC----CCCTTCCEEECCSSCCS
T ss_pred EEECCCCcccc-cCcccCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCC-ccc----CCcCcCCEEECCCCccc
Confidence 77777777665 333456677777777776652 11 1256777777777776 233 22347777777777777
Q ss_pred ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc--cCCccccCCCCCCEEEccCCcCcccCCCC
Q 043978 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND--TFPCWLGSLPLLKILILRSNRFYGPLCKS 587 (683)
Q Consensus 510 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 587 (683)
+. |.. +++|+.|++++|++++ +|. .+++|++|++++|++++ .+|.+++. ++.|.+.+.+|.
T Consensus 331 ~l-p~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~- 393 (454)
T 1jl5_A 331 EL-PAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE- 393 (454)
T ss_dssp CC-CCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------
T ss_pred cc-ccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc-
Confidence 53 322 4677777777777773 444 35677788888877776 44544432 233555444432
Q ss_pred ccccCCCCCcEEeCCCCcCCC--CCcHHHHhcchhhccccccccee
Q 043978 588 ITTFSFQALRIIDLSRNEFKD--FLPRRNFTSMEAMKNVDEQATRL 631 (683)
Q Consensus 588 ~~~~~l~~L~~L~ls~n~~~~--~~p~~~~~~~~~L~~l~l~~n~~ 631 (683)
.+++|++||+++|++++ .+| ..++.+.+.++++
T Consensus 394 ----~~~~L~~L~ls~N~l~~~~~iP-------~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 394 ----LPQNLKQLHVETNPLREFPDIP-------ESVEDLRMNSERV 428 (454)
T ss_dssp ----------------------------------------------
T ss_pred ----ccCcCCEEECCCCcCCccccch-------hhHhheeCcCccc
Confidence 24677888888888876 455 2345555555543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=337.48 Aligned_cols=420 Identities=24% Similarity=0.294 Sum_probs=201.9
Q ss_pred ccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCC
Q 043978 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTK 112 (683)
Q Consensus 33 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~ 112 (683)
..++|++|++++|.+ +. +|..++++++|++|++++|.+.+.+|..++++.+|++++++.|. ..+
T Consensus 9 ~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~--------------~~~ 72 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL--------------DRQ 72 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH--------------HHT
T ss_pred ccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh--------------ccC
Confidence 467899999999988 33 78889999999999999998888888888888888776665442 156
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 192 (683)
+++|++++|.+++... .+++|++|++++|.+++ +|.. .++|++|++++| .+.+... + .++|++|+++
T Consensus 73 l~~L~l~~~~l~~lp~-----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n-~l~~l~~-~--~~~L~~L~L~ 139 (454)
T 1jl5_A 73 AHELELNNLGLSSLPE-----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNN-NLKALSD-L--PPLLEYLGVS 139 (454)
T ss_dssp CSEEECTTSCCSCCCS-----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSS-CCSCCCS-C--CTTCCEEECC
T ss_pred CCEEEecCCccccCCC-----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCC-ccCcccC-C--CCCCCEEECc
Confidence 7888888888776532 23788888888888885 5543 367888888777 4443211 1 1466677777
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 272 (683)
+|.+.+ +| .+..+++|++|++++|++.+ +|..+ .+|++|++++|.+.+ +| .++.+++|++|++++|.+++ +
T Consensus 140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-C
Confidence 666663 45 46666666666666666653 33322 355666666665554 23 35555555666665555552 2
Q ss_pred CccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc
Q 043978 273 PSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL 352 (683)
Q Consensus 273 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 352 (683)
|.. .++|+.|++++|.+.. ++.+..+++ |++|++++|++.
T Consensus 211 ~~~---~~~L~~L~l~~n~l~~-lp~~~~l~~------------------------------------L~~L~l~~N~l~ 250 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILEE-LPELQNLPF------------------------------------LTTIYADNNLLK 250 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSS-CCCCTTCTT------------------------------------CCEEECCSSCCS
T ss_pred CCC---cCcccEEECcCCcCCc-ccccCCCCC------------------------------------CCEEECCCCcCC
Confidence 221 1345555555554442 223344444 444444444443
Q ss_pred ccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEe
Q 043978 353 SFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLD 432 (683)
Q Consensus 353 ~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~ 432 (683)
.++. .+++|+.|++++|++..+|.. .++|+.|++++|.+++++. ..++|+.|+
T Consensus 251 ~l~~--------~~~~L~~L~l~~N~l~~l~~~------------------~~~L~~L~ls~N~l~~l~~-~~~~L~~L~ 303 (454)
T 1jl5_A 251 TLPD--------LPPSLEALNVRDNYLTDLPEL------------------PQSLTFLDVSENIFSGLSE-LPPNLYYLN 303 (454)
T ss_dssp SCCS--------CCTTCCEEECCSSCCSCCCCC------------------CTTCCEEECCSSCCSEESC-CCTTCCEEE
T ss_pred cccc--------cccccCEEECCCCcccccCcc------------------cCcCCEEECcCCccCcccC-cCCcCCEEE
Confidence 3321 124455555555544443321 1445555555555554321 124566666
Q ss_pred CCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc--
Q 043978 433 LRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-- 510 (683)
Q Consensus 433 l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-- 510 (683)
+++|++++. +..+++|++|++++|++.+ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++
T Consensus 304 l~~N~l~~i-~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 304 ASSNEIRSL-CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp CCSSCCSEE-CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCC
T ss_pred CcCCcCCcc-cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCC
Confidence 666665542 1223466666666666664 3332 467777777777776 5665 23477777777777776
Q ss_pred cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc--cCCccccCCCCCCEEEccCCcCcccC
Q 043978 511 HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND--TFPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 511 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
..|..+. .| +.|.+.+..|.. +++|++|++++|.+++ .+| ++++.|.+.+|.+.+..
T Consensus 374 ~ip~~l~------~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 374 DIPESVE------DL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPY 432 (454)
T ss_dssp CCCTTCC------EE--ECCC-------------------------------------------------------
T ss_pred CChHHHH------hh--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCcc
Confidence 3343332 22 234444444442 4678888888888875 333 34666777777776543
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=331.63 Aligned_cols=391 Identities=19% Similarity=0.136 Sum_probs=236.5
Q ss_pred CEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccC-C-CCCCCCCCCEEEC
Q 043978 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYL-P-KCNWSSPLRELDL 191 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~-~~~~~~~L~~L~L 191 (683)
+.++.+++.++.+ |. ++++|++|++++|.+++..|..+..+++|++|++++| .....+ + .+..+++|++|++
T Consensus 13 ~~~~c~~~~l~~l-p~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLHQV-PE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCSSC-CC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcccC-CC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeC
Confidence 3455565555554 22 3367788888888777666777777777777777777 443222 2 5666677777777
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCC--CCCCCCCCCeeeccCccccccCCcc-ccCCCCCCEEEccCCcC
Q 043978 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPT--STGNLSKATEILFASNHLTGQLPHH-VSGLLYLTNLDLFGNSL 268 (683)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l 268 (683)
++|.+.+..|..+.++++|++|++++|.+.+..+. .++.+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77776666666777777777777777776653322 3666667777777777666655544 56666777777777766
Q ss_pred cccCCccccCC--CCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeC
Q 043978 269 QGKVPSWLFTL--PSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDL 346 (683)
Q Consensus 269 ~~~~~~~l~~l--~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 346 (683)
.+..+..+..+ .+|+.|++++|.+....+.... ......+..+++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------------------~~~~~~~~~~~~L~~L~L 219 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------------------WEKCGNPFKNTSITTLDL 219 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------------------HHHHCCTTTTCEEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhcc---------------------------ccccccccccceeeeEec
Confidence 65555555443 4555555555555432211100 000012334455666666
Q ss_pred CCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCC
Q 043978 347 SNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWK 426 (683)
Q Consensus 347 ~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 426 (683)
++|.+......... .....++|+.|++++| .......
T Consensus 220 s~n~l~~~~~~~~~-~~~~~~~L~~L~l~~~--------------------------------------~~~~~~~---- 256 (455)
T 3v47_A 220 SGNGFKESMAKRFF-DAIAGTKIQSLILSNS--------------------------------------YNMGSSF---- 256 (455)
T ss_dssp TTSCCCHHHHHHHH-HHTTTCCEEEEECTTC--------------------------------------TTTSCCT----
T ss_pred CCCcccccchhhhh-ccccccceeeEeeccc--------------------------------------ccccccc----
Confidence 66654322110000 0001123333333333 2211100
Q ss_pred CceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCcccc--CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC
Q 043978 427 NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC--SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504 (683)
Q Consensus 427 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 504 (683)
..+.+ ....+..+. ..++|+.|++++|.+.+..|..+..+. +|++|+++
T Consensus 257 -------~~~~~---------------------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls 307 (455)
T 3v47_A 257 -------GHTNF---------------------KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLA 307 (455)
T ss_dssp -------TCCSS---------------------CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECT
T ss_pred -------chhhh---------------------ccCcccccccccccCceEEEecCccccccchhhcccCC-CCCEEECC
Confidence 00000 000111111 134677777777777655555555544 77777777
Q ss_pred CCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccC
Q 043978 505 NNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 505 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
+|++.+..+..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..|.+|..+++|++|++++|++.+..
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 77777777777878888888888888887777778888888888888888888777788888888888888888887643
Q ss_pred CCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 585 CKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 585 ~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+ ..+..+++|++|++++|++++.+|
T Consensus 388 ~--~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 388 D--GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp T--TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred H--hHhccCCcccEEEccCCCcccCCC
Confidence 3 234677888888888888888877
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=320.78 Aligned_cols=394 Identities=18% Similarity=0.172 Sum_probs=230.2
Q ss_pred CEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCC-cCChhhhhcCcCCccEE
Q 043978 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLS-LIKPFSLLNLSSTMTDL 141 (683)
Q Consensus 63 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~~L~~L 141 (683)
+.++.+++.++.+ |. + .++|++|++++|.+... .+..+.++++|++|++++|.+. .+.+..|..+ ++|++|
T Consensus 13 ~~~~c~~~~l~~l-p~-l--~~~l~~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQV-PE-L--PAHVNYVDLSLNSIAEL---NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIIL 84 (455)
T ss_dssp TEEECCSSCCSSC-CC-C--CTTCCEEECCSSCCCEE---CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEE
T ss_pred cccCcCCCCcccC-CC-C--CCccCEEEecCCccCcC---ChhHhccCccccEEECcCCcccceECccccccc-ccCCEE
Confidence 3455555555443 22 2 14556666655554421 1222344555555555555443 2223344444 455555
Q ss_pred EcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCcc--ccCCCCCCEEEccCCc
Q 043978 142 DLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYS--IGNLLFLETVDITYCN 219 (683)
Q Consensus 142 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 219 (683)
++++|++.+..|..+.. +++|++|++++|.+.+..+.. +..+++|++|++++|.
T Consensus 85 ~Ls~n~l~~~~~~~~~~------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNG------------------------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp ECTTCTTCEECTTTTTT------------------------CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred eCCCCccCccChhhccC------------------------cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc
Confidence 55555444444444444 455555555555554433322 5566666666666666
Q ss_pred ccccCCCC-CCCCCCCCeeeccCccccccCCccccCC--CCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcC
Q 043978 220 FMGSIPTS-TGNLSKATEILFASNHLTGQLPHHVSGL--LYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI 296 (683)
Q Consensus 220 ~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 296 (683)
+.+..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+..+.. ...
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~~ 205 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EKC 205 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HHH
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc---------------ccc
Confidence 66554544 5666666666666666666655555544 56777777777776443332210 011
Q ss_pred CCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEccc
Q 043978 297 DGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSN 376 (683)
Q Consensus 297 ~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~ 376 (683)
..+..+++|++|++++|.+.+..|..++. ....++|+.|++++|...... +..
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~------------------~~~ 258 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFD---------AIAGTKIQSLILSNSYNMGSS------------------FGH 258 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHH---------HTTTCCEEEEECTTCTTTSCC------------------TTC
T ss_pred ccccccceeeeEecCCCcccccchhhhhc---------cccccceeeEeeccccccccc------------------cch
Confidence 12233456666666666666554443322 123467777777777632210 000
Q ss_pred CCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccC
Q 043978 377 CNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSN 456 (683)
Q Consensus 377 ~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 456 (683)
+.+...... .+.++ . .++|++|++++
T Consensus 259 ~~~~~~~~~--------------~~~~~-------------------~---------------------~~~L~~L~l~~ 284 (455)
T 3v47_A 259 TNFKDPDNF--------------TFKGL-------------------E---------------------ASGVKTCDLSK 284 (455)
T ss_dssp CSSCCCCTT--------------TTGGG-------------------T---------------------TSCCCEEECCS
T ss_pred hhhccCccc--------------ccccc-------------------c---------------------ccCceEEEecC
Confidence 000000000 00000 0 12333444444
Q ss_pred CcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccC
Q 043978 457 NKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSL 536 (683)
Q Consensus 457 n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 536 (683)
|.+.+..|..+..+++|++|++++|.+.+..|..+..+. +|++|++++|++++..+..|.++++|+.|++++|++++..
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 444445666777888888888888888755555666554 8888888888888888888888888999999999888888
Q ss_pred chhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 537 PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585 (683)
Q Consensus 537 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 585 (683)
|..|..+++|++|++++|.+++..+..|..+++|++|++++|++.+..|
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888888899999999998887777777888899999999998876654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=318.96 Aligned_cols=399 Identities=18% Similarity=0.134 Sum_probs=233.4
Q ss_pred hhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCC
Q 043978 129 FSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLL 208 (683)
Q Consensus 129 ~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 208 (683)
..++.+ ++|++|++++|.+++. | .+..+++|++|++++| .+.+. + +..+++|++|++++|.+.+. + +..++
T Consensus 36 ~~~~~l-~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n-~l~~~-~-~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQL-ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSN-NITTL-D-LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEHHHH-TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSS-CCSCC-C-CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cChhHc-CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCC-cCCeE-c-cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 344555 5566666666655532 3 3555555555555555 33332 1 44445555555555555432 2 45555
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEcc
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 288 (683)
+|++|++++|.+.+. + ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 555555555555532 2 45555555555555555542 1445555555555555332222 24444555555555
Q ss_pred CCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCC
Q 043978 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368 (683)
Q Consensus 289 ~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~ 368 (683)
+|++++.. +..+++|++|++++|.+++. .+.. +++
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---------------~l~~----------------------------l~~ 213 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITKL---------------DLNQ----------------------------NIQ 213 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSCC---------------CCTT----------------------------CTT
T ss_pred CCccceec--cccCCCCCEEECcCCcCCee---------------cccc----------------------------CCC
Confidence 55544321 33444444444444444311 1333 444
Q ss_pred ccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCC
Q 043978 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS 448 (683)
Q Consensus 369 L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 448 (683)
|+.|++++|+++.+| . ..+++|+.|++++|.+++.++..+++|+.|++++|.+
T Consensus 214 L~~L~Ls~N~l~~ip-~----------------~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L---------- 266 (457)
T 3bz5_A 214 LTFLDCSSNKLTEID-V----------------TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL---------- 266 (457)
T ss_dssp CSEEECCSSCCSCCC-C----------------TTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC----------
T ss_pred CCEEECcCCcccccC-c----------------cccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC----------
Confidence 444444444444433 1 4455666666666666666555666666666666533
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 449 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
+.+++++|.+.+.+| +..+++|+.|++++|...+.+|.. . .+|+.|++++| ++|+.|+++
T Consensus 267 -~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-~~L~~L~l~~~-------------~~L~~L~L~ 326 (457)
T 3bz5_A 267 -LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---A-AGITELDLSQN-------------PKLVYLYLN 326 (457)
T ss_dssp -SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---T-CCCSCCCCTTC-------------TTCCEEECT
T ss_pred -CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---C-CcceEechhhc-------------ccCCEEECC
Confidence 455666666655554 467889999999999887666642 2 26666666554 689999999
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+|++++. + +..+++|++|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|+++|
T Consensus 327 ~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 327 NTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTI 388 (457)
T ss_dssp TCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEE
T ss_pred CCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------ceeeecCccccccCcEEE
Confidence 9999974 3 8899999999999999985 25677778999998764 355678889999999999
Q ss_pred CCcHHHHhcchhhcccccccceeeeccccce-eeEEEEEEeccEEEEeeeeeeE
Q 043978 609 FLPRRNFTSMEAMKNVDEQATRLQYMGHAYY-DESVTVAMKGHDFQLYMLNLDQ 661 (683)
Q Consensus 609 ~~p~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 661 (683)
.+|...+....++....-..+ ..| .....+.|||.+.++..+...+
T Consensus 389 ~ip~~~~~~~~~~~~~~~~~~-------~~y~~~~~~i~~k~~~~~~~~~~y~~ 435 (457)
T 3bz5_A 389 AVSPDLLDQFGNPMNIEPGDG-------GVYDQATNTITWENLSTDNPAVTYTF 435 (457)
T ss_dssp ECCTTCBCTTSCCCEEEESSS-------EEEETTTTEEEESSCCTTSCEECEEE
T ss_pred EcChhHhcccCceeeccCCCC-------ccccCCCCeeEEEeccCCCceEEEEE
Confidence 999776665555543322211 122 3344677887765544444333
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=302.78 Aligned_cols=346 Identities=23% Similarity=0.323 Sum_probs=198.1
Q ss_pred CCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCee
Q 043978 158 LLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEI 237 (683)
Q Consensus 158 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 237 (683)
.+++++.|+++++ .+.. ++.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ ++.+++|++|
T Consensus 44 ~l~~l~~L~l~~~-~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRL-GIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSS-CCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCC-CCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3567777777776 4433 3445566777777777777664332 6667777777777776664433 6666677777
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcc
Q 043978 238 LFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317 (683)
Q Consensus 238 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~ 317 (683)
++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|++++ .+... ..+..+++|++|++++|.+.+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhccCCCCCEEECcCCcCCC
Confidence 777666664322 6666666666666666653 22 355666666666642 22221 224455556666665555541
Q ss_pred cCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccC
Q 043978 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397 (683)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~ 397 (683)
. ..+..+++|+.|++++|.+..+.. ...+++|+.|++++|.+..++..
T Consensus 192 ~--------------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~l------------ 239 (466)
T 1o6v_A 192 I--------------SVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIGTL------------ 239 (466)
T ss_dssp C--------------GGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCGGG------------
T ss_pred C--------------hhhccCCCCCEEEecCCccccccc------ccccCCCCEEECCCCCcccchhh------------
Confidence 1 124445555555555555433321 22344555555555544433221
Q ss_pred CCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEE
Q 043978 398 KHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLS 477 (683)
Q Consensus 398 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 477 (683)
..+++|+.|++++|.+++... +..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 240 ----~~l~~L~~L~l~~n~l~~~~~--------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 240 ----ASLTNLTDLDLANNQISNLAP--------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp ----GGCTTCSEEECCSSCCCCCGG--------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred ----hcCCCCCEEECCCCccccchh--------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 333444444444444333211 1234445555555555553322 66677777777
Q ss_pred cCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 478 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
+++|++.+ ++. +..+ ++|+.|++++|++++..+ +..+++|+.|++++|++++. ..+..+++|++|++++|+++
T Consensus 294 L~~n~l~~-~~~-~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 294 LNENQLED-ISP-ISNL-KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCSSCCSC-CGG-GGGC-TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred cCCCcccC-chh-hcCC-CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 77777763 332 3433 377777777777766544 56677777777777777643 35667777777777777776
Q ss_pred ccCCccccCCCCCCEEEccCCcCcc
Q 043978 558 DTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+..| +..+++|+.|++++|++++
T Consensus 367 ~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccch--hhcCCCCCEEeccCCcccC
Confidence 6555 6677777777777777665
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=301.43 Aligned_cols=361 Identities=22% Similarity=0.201 Sum_probs=253.5
Q ss_pred cccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHcc
Q 043978 30 TLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASN 109 (683)
Q Consensus 30 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~ 109 (683)
++..+++|++|++++|.+.+. | .++.+++|++|++++|.++++ | ++.+++|++|++++|.++.. + +++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----D--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----C--CTT
T ss_pred ChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----e--cCC
Confidence 567888899999998888653 4 588888999999999988876 3 88888899999998887632 2 578
Q ss_pred CCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEE
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLREL 189 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 189 (683)
+++|++|++++|.+++. + +..+ ++|++|++++|++++. .++.+++|++|++++| ...+.+ .+..+++|+.|
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l-~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n-~~~~~~-~~~~l~~L~~L 175 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQN-PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLN-KKITKL-DVTPQTQLTTL 175 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTC-TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTC-SCCCCC-CCTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCC-CcCCEEECCCCcccee---ccccCCcCCEEECCCC-Cccccc-ccccCCcCCEE
Confidence 88888888888888876 2 6777 8888888888888863 3778888888888888 333333 46677788888
Q ss_pred ECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCc
Q 043978 190 DLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 190 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 269 (683)
++++|.+++ +| +..+++|+.|++++|.+.+. .++.+++|++|++++|++++ +| +..+++|++|++++|.++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 888888774 34 67778888888888877753 36777788888888887776 34 667777888888888777
Q ss_pred ccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 270 GKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 270 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
+.. +..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|
T Consensus 247 ~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--------------~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--------------AEGCRKIKELDVTHN 296 (457)
T ss_dssp CCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--------------CTTCTTCCCCCCTTC
T ss_pred CcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--------------ccccccCCEEECCCC
Confidence 532 345667777776654 35566677776554433 345677888888877
Q ss_pred CccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCce
Q 043978 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIR 429 (683)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 429 (683)
..... ++ ...++|+.|++ .++++|+.|++++|+++++.+..+++|+
T Consensus 297 ~~l~~-----l~--~~~~~L~~L~l---------------------------~~~~~L~~L~L~~N~l~~l~l~~l~~L~ 342 (457)
T 3bz5_A 297 TQLYL-----LD--CQAAGITELDL---------------------------SQNPKLVYLYLNNTELTELDVSHNTKLK 342 (457)
T ss_dssp TTCCE-----EE--CTTCCCSCCCC---------------------------TTCTTCCEEECTTCCCSCCCCTTCTTCS
T ss_pred cccce-----ec--cCCCcceEech---------------------------hhcccCCEEECCCCcccccccccCCcCc
Confidence 63211 01 12334444443 3346778888888888877666777788
Q ss_pred EEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhc
Q 043978 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNF 494 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 494 (683)
.|++++|++++ .+.|..|++++|.+.+. ..+..|..+++++|+++|.+|..+...
T Consensus 343 ~L~l~~N~l~~-----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 343 SLSCVNAHIQD-----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp EEECCSSCCCB-----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred EEECCCCCCCC-----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence 88888887775 34566666666666654 234456666777777776666655443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=300.59 Aligned_cols=346 Identities=25% Similarity=0.329 Sum_probs=283.6
Q ss_pred CCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEE
Q 043978 206 NLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSV 285 (683)
Q Consensus 206 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 285 (683)
.+++++.|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 46789999999998874 44 47889999999999999986544 8999999999999999986544 8899999999
Q ss_pred EccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccC
Q 043978 286 NLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365 (683)
Q Consensus 286 ~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~ 365 (683)
++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|+++ |.+..+ ..+..
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-------------~~~~l~~L~~L~l~-~~~~~~------~~~~~ 175 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-------------ALSGLTSLQQLSFG-NQVTDL------KPLAN 175 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-------------GGTTCTTCSEEEEE-ESCCCC------GGGTT
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-------------hhccCCcccEeecC-CcccCc------hhhcc
Confidence 999999887543 7789999999999998873 22 47889999999996 443333 23668
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCcc-CC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGS-IL 443 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~-~~ 443 (683)
+++|+.|++++|.+..++.. ..+++|+.|++++|.+++.. ...+++|+.|++++|.+++. .+
T Consensus 176 l~~L~~L~l~~n~l~~~~~l----------------~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISVL----------------AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGG----------------GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCCEEECcCCcCCCChhh----------------ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh
Confidence 99999999999998876543 77899999999999988774 34678999999999998764 23
Q ss_pred CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCcc
Q 043978 444 VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523 (683)
Q Consensus 444 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 523 (683)
..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+ ++. +..+ ++|+.|++++|++.+..+ +..+++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGL-TALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTC-TTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCC-CccCeEEcCCCcccCchh--hcCCCCCC
Confidence 467889999999999886544 8889999999999999884 444 5544 489999999999887654 77889999
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
.|++++|++++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLND 384 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG----GTTCTTCCEEECCC
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch----hhcCCCCCEEeccC
Confidence 99999999986655 78889999999999998865 468889999999999999887654 57788999999999
Q ss_pred CcCCCCCc
Q 043978 604 NEFKDFLP 611 (683)
Q Consensus 604 n~~~~~~p 611 (683)
|++++ .|
T Consensus 385 n~~~~-~p 391 (466)
T 1o6v_A 385 QAWTN-AP 391 (466)
T ss_dssp EEEEC-CC
T ss_pred CcccC-Cc
Confidence 99986 45
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=297.00 Aligned_cols=346 Identities=20% Similarity=0.189 Sum_probs=200.9
Q ss_pred CEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCC
Q 043978 187 RELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGN 266 (683)
Q Consensus 187 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 266 (683)
+.++.+++.+. .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555555444 3343332 35555666655555554555555555555555555555555555555555555555555
Q ss_pred cCcccCCccccCCCCCcEEEccCCcccCcCC-CCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 267 SLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 267 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
.++...+..|..+++|+.|++++|.+....+ .+..+++|++|++++|.+.+..+. .|..
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------~~~~-------- 150 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR------------AFSG-------- 150 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT------------SSTT--------
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh------------hccC--------
Confidence 5554333344445555555555555443221 222344444444444444321111 3333
Q ss_pred CCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCC
Q 043978 346 LSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW 425 (683)
Q Consensus 346 l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 425 (683)
+++|++|++++|.++.+|... +..+++|+.|++++|.+..+....
T Consensus 151 --------------------l~~L~~L~l~~n~l~~~~~~~--------------l~~l~~L~~L~l~~n~i~~~~~~~- 195 (477)
T 2id5_A 151 --------------------LNSLEQLTLEKCNLTSIPTEA--------------LSHLHGLIVLRLRHLNINAIRDYS- 195 (477)
T ss_dssp --------------------CTTCCEEEEESCCCSSCCHHH--------------HTTCTTCCEEEEESCCCCEECTTC-
T ss_pred --------------------CCCCCEEECCCCcCcccChhH--------------hcccCCCcEEeCCCCcCcEeChhh-
Confidence 444444444444444333211 134455555555555444332211
Q ss_pred CCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCC
Q 043978 426 KNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505 (683)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 505 (683)
+..+++|++|++++|...+.++.......+|+.|++++|.+. .+|...+...++|+.|++++
T Consensus 196 -----------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 196 -----------------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp -----------------SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCS
T ss_pred -----------------cccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCC
Confidence 112233344444444444344444445568999999999998 66654444445899999999
Q ss_pred CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLC 585 (683)
Q Consensus 506 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 585 (683)
|++++..+..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.....
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99988888889999999999999999998888889999999999999999988777788889999999999998864322
Q ss_pred CCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 586 KSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 586 ~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
. ..-......+++.++...+.-|
T Consensus 338 ~---~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 338 L---LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp G---HHHHTTTTSSCCTTCCCBEEES
T ss_pred h---HhHHhhhhccccCccCceeCCc
Confidence 1 1111223334555666655455
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=280.58 Aligned_cols=138 Identities=22% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
++|+.|++++|.+.+ . ..+..+. +|++|++++|++++..+..|..+++|+.|++++|++++ .|..+..+++|++|+
T Consensus 226 ~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-T-AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCC-C-GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCcc-c-HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEE
Confidence 456677777776653 2 3344443 77777777777777777777777788888888887774 355566777888888
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 551 VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 551 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
+++|++. .+|..+..+++|++|++++|++... ....+++|++|++++|++.+.....+|..+
T Consensus 302 L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 302 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363 (390)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-----CCCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred CCCCcce-ecCccccccCcCCEEECCCCcccee-----CchhhccCCEEEcCCCCccchhHHHHHHHH
Confidence 8888876 3555667778888888888887643 245677888888888888764433444433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=288.27 Aligned_cols=276 Identities=20% Similarity=0.194 Sum_probs=156.0
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
+++++|+|++|.+... .+..|.++++|++|++++|.+.++.|.+|.++++|++|++++|.+...+. ..+.++++|+
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL---GVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT---TSSTTCTTCC
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc---ccccCCCCCC
Confidence 4667777777766554 34566777777777777777776666677777777777777766552221 1245666666
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSL 193 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~ 193 (683)
+|++++|.+....+..|..+ ++|++|++++|.+.+..+..+..+++|++|++++| .+....+ .+..+++|+.|++++
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp EEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEES
T ss_pred EEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCC
Confidence 66666666666666666666 66666666666666555556666666666666666 4433322 344555555555555
Q ss_pred CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 043978 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP 273 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 273 (683)
|.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|.++...+..+..+++|++|++++|.+++..+
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 55554444455555555555555555444444444444455555555555554333445555555555555555554444
Q ss_pred ccccCCCCCcEEEccCCcccCc-CCCCCCCCCCcEEECCCCcCc
Q 043978 274 SWLFTLPSLVSVNLAWNKLTGP-IDGFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n~i~~~-~~~~~~~~~L~~L~L~~n~i~ 316 (683)
..+..+++|+.|++++|++... ...+..+++|++|++++|.++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 4445555555555555554442 222334444444444444444
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-32 Score=281.27 Aligned_cols=310 Identities=18% Similarity=0.171 Sum_probs=209.1
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEE
Q 043978 207 LLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVN 286 (683)
Q Consensus 207 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 286 (683)
+++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666666666666543333355566666666666666655555666666666666666666655555566666666666
Q ss_pred ccCCcccCcCCCC-CCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccC
Q 043978 287 LAWNKLTGPIDGF-QSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365 (683)
Q Consensus 287 L~~n~i~~~~~~~-~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~ 365 (683)
+++|.+...++.. ..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l-------------- 177 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD------------TFQATTSLQNLQLSSNRL-------------- 177 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT------------TTSSCTTCCEEECCSSCC--------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh------------hccCCCCCCEEECCCCcC--------------
Confidence 6666665444332 3555555555555555422222 344455555555555553
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVP 445 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 445 (683)
+.++. ..+++|+.+++++|.++.+.. .++|+.|++++|.+.......
T Consensus 178 --------------~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~--~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 178 --------------THVDL-----------------SLIPSLFHANVSYNLLSTLAI--PIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp --------------SBCCG-----------------GGCTTCSEEECCSSCCSEEEC--CSSCSEEECCSSCCCEEECCC
T ss_pred --------------Ccccc-----------------ccccccceeecccccccccCC--CCcceEEECCCCeeeeccccc
Confidence 33221 344556666666665554422 246777777777776655555
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+. +|+.|++++|++++. +..+..+++|+.|
T Consensus 225 ~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~-~~~~~~l~~L~~L 300 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLVAL-NLYGQPIPTLKVL 300 (390)
T ss_dssp CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECCSSCCCEE-ECSSSCCTTCCEE
T ss_pred cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccc-cCCEEECCCCcCccc-CcccCCCCCCCEE
Confidence 67788888888888754 6788899999999999999866677776665 899999999999864 4556778999999
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++++|+++ ..|..+..+++|++|++++|.+++. + +..+++|+.|++++|++...
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 99999998 5677788889999999999999764 3 67788999999999998643
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=270.72 Aligned_cols=130 Identities=18% Similarity=0.320 Sum_probs=85.8
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 546 (683)
+..+++|++|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~-~~~~-~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKIT-DLSP-LANLS-QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG-GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred hhcCCcCCEEEccCCccC-CCcc-hhcCC-CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 455666666666666665 3333 33333 677777777766653 3566677777777777777643 346777777
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 547 EVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 547 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|++++|.+.+..+..++.+++|++|++++|++++..+ ...+++|++||+++|+|+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence 777777777777777777777777777777777765433 456777778888877765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=271.28 Aligned_cols=169 Identities=24% Similarity=0.362 Sum_probs=125.9
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEc
Q 043978 448 STEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL 527 (683)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 527 (683)
+|++|++++|.+.+. + .+..+++|+.|++++|.+.+ ++. +..+ ++|++|++++|++++..+ +..+++|+.|++
T Consensus 178 ~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 250 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDI-S-PLASLTSLHYFTAYVNQITD-ITP-VANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEI 250 (347)
T ss_dssp TCSEEECTTSCCCCC-G-GGGGCTTCCEEECCSSCCCC-CGG-GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCEEEccCCccccc-c-cccCCCccceeecccCCCCC-Cch-hhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence 334444444444432 2 27778889999999998874 333 4444 489999999998886654 888899999999
Q ss_pred CCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 528 NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 528 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|+++
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM--EVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH--HHHHTCTTCSEEECCSSSCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh--hHhhccccCCEEEccCCccc
Confidence 99988753 4688889999999999988864 457888999999999998876544 34567889999999999998
Q ss_pred CCCcHHHHhcchhhcccccccceee
Q 043978 608 DFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 608 ~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
+..| +..++.|+.+++++|+++
T Consensus 325 ~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 325 DIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGG---GGGCTTCSEESSSCC---
T ss_pred cccC---hhhhhccceeehhhhccc
Confidence 6555 788889999999988764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=293.01 Aligned_cols=146 Identities=21% Similarity=0.215 Sum_probs=67.2
Q ss_pred ceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCc
Q 043978 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507 (683)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 507 (683)
|+.|++++|.+.......+++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..+..+. +|+.|++++|.
T Consensus 213 L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~ 289 (597)
T 3oja_B 213 VEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNR 289 (597)
T ss_dssp CSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSC
T ss_pred hheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCC
Confidence 4444444444432222222333334444444332 13455555555555555555544444444433 55555555555
Q ss_pred ccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+++. +..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. + +..+++|+.|++++|++.
T Consensus 290 l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 290 LVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 5442 333344455555555555554 3344445555555555555555432 1 334445555555555543
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-31 Score=288.02 Aligned_cols=110 Identities=14% Similarity=0.104 Sum_probs=54.3
Q ss_pred CCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEc
Q 043978 184 SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDL 263 (683)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 263 (683)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..+..|+++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34455555555544333333455555555555555555444445555555555555555555444444555555555555
Q ss_pred cCCcCcccCCccccCCCCCcEEEccCCccc
Q 043978 264 FGNSLQGKVPSWLFTLPSLVSVNLAWNKLT 293 (683)
Q Consensus 264 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 293 (683)
++|.+++..+..|..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 555554333333344444444444444443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=251.38 Aligned_cols=161 Identities=18% Similarity=0.235 Sum_probs=109.5
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
..+.++++|++|++++|.+. .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..++
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 34555666666666666665 4554433 3677777777777777677777777788888888877776666777777
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccc----cCCCCCcEEeCCCCcCCC-CCcHHHHhcch
Q 043978 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT----FSFQALRIIDLSRNEFKD-FLPRRNFTSME 619 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----~~l~~L~~L~ls~n~~~~-~~p~~~~~~~~ 619 (683)
+|++|++++|.++ .+|.++..+++|++|++++|++++..+..+.. ...+.|+.+++++|++.. .++...|..+.
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 8888888888776 56667777788888888888877554322211 124678888888888863 24446788888
Q ss_pred hhcccccccce
Q 043978 620 AMKNVDEQATR 630 (683)
Q Consensus 620 ~L~~l~l~~n~ 630 (683)
.++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 88888888874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=249.42 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEcc
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 288 (683)
+++.++++++.+. .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|+.|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3455555555444 3333331 455555555555555555556666666666666666665555556666666666666
Q ss_pred CCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcc
Q 043978 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL 352 (683)
Q Consensus 289 ~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 352 (683)
+|.+......+. ++|++|++++|.+.+..+ ..|..+++|+.|++++|.++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPK------------GVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCS------------GGGSSCSSCCEEECCSCCCB
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCH------------hHhCCCccCCEEECCCCccc
Confidence 666554333332 566777777776652221 24666777777777777654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=248.45 Aligned_cols=289 Identities=17% Similarity=0.115 Sum_probs=204.4
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCE
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
++++++++++.+.. +|..+. ++|++|++++|.++++.+..|.++++|++|++++|.+.. ..|..+.++++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---eCHHHhcCCCCCCE
Confidence 67777777776643 344333 467777777777777766677777777777777777652 22344567777777
Q ss_pred EEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcc--cCC-CCCCCCCCCEEECC
Q 043978 116 LHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTG--YLP-KCNWSSPLRELDLS 192 (683)
Q Consensus 116 L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~-~~~~~~~L~~L~L~ 192 (683)
|++++|.++.... .+. ++|++|++++|.+.+..+..+..+++|++|++++| .+.. ..+ .+..+++|++|+++
T Consensus 105 L~Ls~n~l~~l~~-~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 105 LYLSKNQLKELPE-KMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EECCSSCCSBCCS-SCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EECCCCcCCccCh-hhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECC
Confidence 7777777765532 222 67777888877777666666777778888888777 4432 222 56667778888888
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV 272 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 272 (683)
+|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 255 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SC
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cC
Confidence 87776 3454443 67888888888888777777888888888888888888777777888888888888888888 67
Q ss_pred CccccCCCCCcEEEccCCcccCcCCCCC-------CCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 273 PSWLFTLPSLVSVNLAWNKLTGPIDGFQ-------SPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 273 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~-------~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
|.++..+++|+.|++++|+++....... ....++.+++++|++... .+....|..+.+++.++
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~----------~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW----------EIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG----------GSCGGGGTTCCCGGGEE
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc----------ccCccccccccceeEEE
Confidence 7778888888888888888876443222 246788999999988631 12334788899999999
Q ss_pred CCCCC
Q 043978 346 LSNNN 350 (683)
Q Consensus 346 l~~n~ 350 (683)
+++|+
T Consensus 326 L~~N~ 330 (330)
T 1xku_A 326 LGNYK 330 (330)
T ss_dssp C----
T ss_pred ecccC
Confidence 99885
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=249.22 Aligned_cols=251 Identities=22% Similarity=0.267 Sum_probs=178.4
Q ss_pred ccCCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECC
Q 043978 334 QFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLS 413 (683)
Q Consensus 334 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 413 (683)
.|..+++|++|++++|.++.+.. ..+..+++|++|++++|.+..+|.. ..++|++|+++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~-----------------~~~~L~~L~l~ 131 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHE----KAFSPLRKLQKLYISKNHLVEIPPN-----------------LPSSLVELRIH 131 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECG----GGSTTCTTCCEEECCSSCCCSCCSS-----------------CCTTCCEEECC
T ss_pred HhhCCCCCcEEECCCCccCccCH----hHhhCcCCCCEEECCCCcCCccCcc-----------------ccccCCEEECC
Confidence 45555555666665555444321 1233455555555555555544431 11566677777
Q ss_pred CCcccccCC---CCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChh
Q 043978 414 NNFLTHIAL---HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC 490 (683)
Q Consensus 414 ~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~ 490 (683)
+|.++.++. ..+++|+.|++++|.++. .+..+..+..+ +|+.|++++|.+. .+|..
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~ 190 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------------SGFEPGAFDGL-KLNYLRISEAKLT-GIPKD 190 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBG-------------------GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCcccc-------------------CCCCcccccCC-ccCEEECcCCCCC-ccCcc
Confidence 666665532 244555555555554432 12456667777 8999999999998 57766
Q ss_pred hhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCC
Q 043978 491 LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLL 570 (683)
Q Consensus 491 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 570 (683)
+. ++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.++ .+|.++..+++|
T Consensus 191 ~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 191 LP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp SC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred cc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 54 48999999999999888889999999999999999999888888999999999999999998 678889999999
Q ss_pred CEEEccCCcCcccCCCCcccc----CCCCCcEEeCCCCcCCC-CCcHHHHhcchhhcccccccce
Q 043978 571 KILILRSNRFYGPLCKSITTF----SFQALRIIDLSRNEFKD-FLPRRNFTSMEAMKNVDEQATR 630 (683)
Q Consensus 571 ~~L~l~~n~l~~~~~~~~~~~----~l~~L~~L~ls~n~~~~-~~p~~~~~~~~~L~~l~l~~n~ 630 (683)
++|++++|++++..+..+... ..+.|+.|++++|++.. .++...|..++.|+.+++++|+
T Consensus 267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999986654332211 25779999999999972 2444789999999999998874
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=260.50 Aligned_cols=247 Identities=22% Similarity=0.297 Sum_probs=155.1
Q ss_pred cCCeeeCCCCCCCC--CCCCcccCCCCCCCEEeCCC-CCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCC
Q 043978 36 HLQSLNLAFNNFLG--SRISPEFGRLKELTYLNPSF-SNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTK 112 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~ 112 (683)
++++|+|++|.+.+ . +|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+. +.+|..+.++++
T Consensus 51 ~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGGGGGCTT
T ss_pred eEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHHHhCCCC
Confidence 44555555554443 2 344455555555555552 4444444555555555555555555444 222333445555
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCC-CCcEEEccCCCCCcccCC-CCCCCCCCCEEE
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLP-NLRVLYLCGNIHLTGYLP-KCNWSSPLRELD 190 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~ 190 (683)
|++|++++|.+++..|..+..+ ++|++|++++|++++.+|..+..++ +|++|++++| .+.+..+ .+..++ |++|+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEE
T ss_pred CCEEeCCCCccCCcCChHHhcC-CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEE
Confidence 5555555555554445555555 5555555555555555555555555 5566666655 4443333 344444 66777
Q ss_pred CCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcc
Q 043978 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQG 270 (683)
Q Consensus 191 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 270 (683)
+++|.+.+..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 777777766777778888888888888887755544 6777888888888888887888888888888888888888887
Q ss_pred cCCccccCCCCCcEEEccCCc
Q 043978 271 KVPSWLFTLPSLVSVNLAWNK 291 (683)
Q Consensus 271 ~~~~~l~~l~~L~~L~L~~n~ 291 (683)
.+|.. ..+++|+.+++++|+
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCC-ccccccChHHhcCCC
Confidence 77775 778888888888887
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-31 Score=287.43 Aligned_cols=393 Identities=20% Similarity=0.190 Sum_probs=221.8
Q ss_pred CCCEEECCCCcCccccCc-cccCCCCCCEEEccCCcccc----cCCCCCCCCCCCCeeeccCccccccCCccc-cCCC--
Q 043978 185 PLRELDLSLSDFSGEIPY-SIGNLLFLETVDITYCNFMG----SIPTSTGNLSKATEILFASNHLTGQLPHHV-SGLL-- 256 (683)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~-- 256 (683)
+|++|+++++.++..... .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455566665555432222 25566666666666666653 223445555666666666666654333222 2233
Q ss_pred --CCCEEEccCCcCcc----cCCccccCCCCCcEEEccCCcccCc-CC----C-CCCCCCCcEEECCCCcCcccCCccch
Q 043978 257 --YLTNLDLFGNSLQG----KVPSWLFTLPSLVSVNLAWNKLTGP-ID----G-FQSPNSLEEVHLEKNQIHGTIPSSLF 324 (683)
Q Consensus 257 --~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~-~~----~-~~~~~~L~~L~L~~n~i~~~~~~~~~ 324 (683)
+|++|++++|.+++ .++..+..+++|++|++++|.+... .. . ....++|++|++++|.+++..+..+.
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 57777777776663 3355666667777777777766531 11 1 11245677777777766643222111
Q ss_pred hccCcccccccCCCCCCCEEeCCCCCccccccccccccc-cCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccC
Q 043978 325 QLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK-YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKG 403 (683)
Q Consensus 325 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~-~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~ 403 (683)
. .+..+++|++|++++|.+............ ...++|++|++++|.++..+.. .++... ..
T Consensus 164 ~--------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---------~l~~~l-~~ 225 (461)
T 1z7x_W 164 S--------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR---------DLCGIV-AS 225 (461)
T ss_dssp H--------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH---------HHHHHH-HH
T ss_pred H--------HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH---------HHHHHH-Hh
Confidence 1 345567777777777775432111100000 0244666666666655531100 000000 34
Q ss_pred CCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCC----CCccccCCCCCCEEEcC
Q 043978 404 WKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQ----IPPYICSLSSLKYLSLS 479 (683)
Q Consensus 404 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~Ls 479 (683)
+++|++|++++|.+++..... +.......+++|++|++++|.++.. ++..+..+++|++|+++
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~-------------l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAE-------------LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHH-------------HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred CCCccEEeccCCcCChHHHHH-------------HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 455666666655554321000 0000011234455555555554432 45566778888899998
Q ss_pred CCcCCCCCChhhhhc----cCcccEEECCCCccccc----ccccccCCCCccEEEcCCCcccccCchhhhc-----CCCC
Q 043978 480 HNNLSGTIPPCLGNF----TTQLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGSLPRSLAK-----CVKL 546 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L 546 (683)
+|.+.+..+..+... .++|++|++++|.+++. .+..+..+++|+.|++++|++++..+..+.. .++|
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce
Confidence 888764333333322 24888999999888765 3556667788999999999887655554443 6789
Q ss_pred cEEEccCCcCCc----cCCccccCCCCCCEEEccCCcCcccCCCCc---cccCCCCCcEEeCCCCcCCC
Q 043978 547 EVVNVGNNMIND----TFPCWLGSLPLLKILILRSNRFYGPLCKSI---TTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 547 ~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~ls~n~~~~ 608 (683)
++|++++|.+++ .+|..+..+++|++|++++|++.+...... .......|+.|++.++.+..
T Consensus 373 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 999999998886 567777888899999999998764311000 01123468888888887764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-32 Score=290.41 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCC----hhhhhcCcCCccEEEcCCCcCC
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIK----PFSLLNLSSTMTDLDLSGTRIQ 149 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~~L~~L~l~~n~i~ 149 (683)
++|++|+++++.+... .+...+..+++|++|++++|.++... +..+..+ ++|++|++++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA--RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCHH--HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCH
T ss_pred ccceehhhhhcccCch--hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCC
Confidence 3456666666655421 23333555666666666666655321 3334444 55555555555554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-29 Score=251.26 Aligned_cols=248 Identities=27% Similarity=0.331 Sum_probs=199.8
Q ss_pred CCCCEEeCCCCCCCC--CCCccCcCCCCCCEEeCCC-CcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcC
Q 043978 60 KELTYLNPSFSNFGG--LVPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSS 136 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~ls~-n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 136 (683)
.++++|+++++.+.+ .+|..|.++++|++|++++ |.+. +.+|..+.++++|++|++++|.+++..|..+..+ +
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-K 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-T
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc---ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC-C
Confidence 589999999999998 7889999999999999995 7766 4556678899999999999999988878889998 9
Q ss_pred CccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCC-CCCEEECCCCcCccccCccccCCCCCCEEE
Q 043978 137 TMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSS-PLRELDLSLSDFSGEIPYSIGNLLFLETVD 214 (683)
Q Consensus 137 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 214 (683)
+|++|++++|.+.+..|..+..+++|++|++++| .+.+.++ .+..++ +|++|++++|.+.+..|..+..++ |++|+
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence 9999999999999888888889999999999988 6665555 666666 788888888888777777777776 88888
Q ss_pred ccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC
Q 043978 215 ITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG 294 (683)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 294 (683)
+++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|.++..+++|+.|++++|++++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 888888777777778888888888888887755554 6677788888888888877777777777777777777777776
Q ss_pred cCCCCCCCCCCcEEECCCCc
Q 043978 295 PIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 295 ~~~~~~~~~~L~~L~L~~n~ 314 (683)
.++....+++|+.+++++|+
T Consensus 283 ~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCSTTGGGSCGGGTCSSS
T ss_pred cCCCCccccccChHHhcCCC
Confidence 55555566667777777665
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-30 Score=281.88 Aligned_cols=411 Identities=12% Similarity=0.071 Sum_probs=210.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCccCcC-CC-CCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCCh----hhh
Q 043978 58 RLKELTYLNPSFSNFGGLVPSEISH-LS-KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKP----FSL 131 (683)
Q Consensus 58 ~l~~L~~L~Ls~~~~~~~~~~~~~~-l~-~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l 131 (683)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.. .....++....++++|++|++++|.+++... ..+
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4556666666665555443333433 22 266666655531 1122333444455555555555555443321 122
Q ss_pred hcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCC
Q 043978 132 LNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLE 211 (683)
Q Consensus 132 ~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 211 (683)
..+ ++|++|++++|.+.+.....+ ...+..+++|+.|++++|.+.+ ++..+..+++|+
T Consensus 189 ~~~-~~L~~L~L~~n~~~~~~~~~l--------------------~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~ 246 (592)
T 3ogk_B 189 QHN-TSLEVLNFYMTEFAKISPKDL--------------------ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLE 246 (592)
T ss_dssp HHC-CCCCEEECTTCCCSSCCHHHH--------------------HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCC
T ss_pred hcC-CCccEEEeeccCCCccCHHHH--------------------HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHH
Confidence 333 555555555555442111110 0022334555555555555542 455666667777
Q ss_pred EEEccCCccc---ccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCcEEEc
Q 043978 212 TVDITYCNFM---GSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVP-SWLFTLPSLVSVNL 287 (683)
Q Consensus 212 ~L~l~~~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L 287 (683)
+|+++..... ...+..+..+++|+.++++++.. ..++..+..+++|++|++++|.+++... ..+..+++|+.|++
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEec
Confidence 7776643222 22334556667777777766432 2455566667778888888777654332 33466778888888
Q ss_pred cCCcccC-cCCCC-CCCCCCcEEECCC-----------CcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccc
Q 043978 288 AWNKLTG-PIDGF-QSPNSLEEVHLEK-----------NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSF 354 (683)
Q Consensus 288 ~~n~i~~-~~~~~-~~~~~L~~L~L~~-----------n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 354 (683)
+ +.+.. ..+.+ ..+++|++|++++ +.+++.... .....+++|++|+++.+.++..
T Consensus 326 ~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 326 R-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-----------ALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp E-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH-----------HHHHHCTTCSEEEEEESCCCHH
T ss_pred c-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH-----------HHHhhCccCeEEEeecCCccHH
Confidence 7 33322 22222 2567788888883 344421111 1234578999999977774322
Q ss_pred ccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCC
Q 043978 355 TSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLR 434 (683)
Q Consensus 355 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 434 (683)
. .......+++|+.|+++++. ..|.+++.+..
T Consensus 394 ~---~~~l~~~~~~L~~L~l~~~~----------------------------------~~n~l~~~p~~----------- 425 (592)
T 3ogk_B 394 S---LESIGTYLKNLCDFRLVLLD----------------------------------REERITDLPLD----------- 425 (592)
T ss_dssp H---HHHHHHHCCSCCEEEEEECS----------------------------------CCSCCSSCCCH-----------
T ss_pred H---HHHHHhhCCCCcEEEEeecC----------------------------------CCccccCchHH-----------
Confidence 1 10111124444444443211 01111110000
Q ss_pred CCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc--CCCCCChhhhhccCcccEEECCCCccccc-
Q 043978 435 NNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN--LSGTIPPCLGNFTTQLITLHLKNNSLEGH- 511 (683)
Q Consensus 435 ~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~~~~~L~~L~l~~n~l~~~- 511 (683)
..++..+.++++|+.|++++|. +++..+..+....++|++|++++|++++.
T Consensus 426 --------------------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 426 --------------------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp --------------------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred --------------------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 0011224456677777776543 44333444444445677777777777653
Q ss_pred ccccccCCCCccEEEcCCCccccc-CchhhhcCCCCcEEEccCCcCCccCCcccc-CCCCCCEEEccCC
Q 043978 512 IHDTFENASNIQSFDLNCNKFEGS-LPRSLAKCVKLEVVNVGNNMINDTFPCWLG-SLPLLKILILRSN 578 (683)
Q Consensus 512 ~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n 578 (683)
.+..+.++++|+.|++++|++++. .+..+..+++|++|++++|++++.....+. .+|.+....+..+
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 334456677777777777776543 233345677777777777777654333332 5566665555544
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=227.95 Aligned_cols=227 Identities=20% Similarity=0.241 Sum_probs=169.0
Q ss_pred cCCCcCcEEECCCCcccccC-----CCCCCCceEEeCCCCCCCccC--CCCCCCCcEEEccCCcccCCCC-ccccCCCCC
Q 043978 402 KGWKSLIDLDLSNNFLTHIA-----LHPWKNIRTLDLRNNKIQGSI--LVPPPSTEVFLVSNNKLSGQIP-PYICSLSSL 473 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L 473 (683)
..+++|+.|++++|.++... ...+++|++|++++|.+++.. +..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence 44455555555555554321 113455666666666554321 2356777777777777776554 578889999
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc-cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG-HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
++|++++|.+.+..+..+..+. +|++|++++|.+.+ ..+..|..+++|+.|++++|++++..|..|..+++|++|+++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCCccchhhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 9999999999866666666555 99999999999986 578889999999999999999998888999999999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCC-CCCcEEeCCCCcCCCCCcHHHH-hcchhhcccccccce
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSF-QALRIIDLSRNEFKDFLPRRNF-TSMEAMKNVDEQATR 630 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~ls~n~~~~~~p~~~~-~~~~~L~~l~l~~n~ 630 (683)
+|.+++..+..+..+++|++|++++|++.+..+. .+..+ ++|++|++++|++.+..+...| ..+...+.+....+.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~ 285 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER 285 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGG
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccc
Confidence 9999988777889999999999999999877653 34566 4899999999999877664444 334555555554444
Q ss_pred e
Q 043978 631 L 631 (683)
Q Consensus 631 ~ 631 (683)
+
T Consensus 286 ~ 286 (306)
T 2z66_A 286 M 286 (306)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=220.72 Aligned_cols=248 Identities=20% Similarity=0.198 Sum_probs=154.4
Q ss_pred CeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEE
Q 043978 38 QSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLH 117 (683)
Q Consensus 38 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~ 117 (683)
+.++.+++.++. +|..+. ++|++|++++|.++.+.+..|.++++|++|++++|.+.... ..+..+..+++|++|+
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG-CCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE-EEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc-CcccccccccccCEEE
Confidence 456666666543 343332 47777788777777666666777777888888777665221 1123345677777777
Q ss_pred cCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCC-ccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 118 LGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP-DQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 118 L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
+++|.+... +..+..+ ++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+ .+..+++|++|++++|.
T Consensus 85 Ls~n~i~~l-~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 85 LSFNGVITM-SSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CCSCSEEEE-EEEEETC-TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCCccccC-hhhcCCC-CCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCc
Confidence 777777654 4456666 777778777777775443 45666777777777776 4444333 45556666666666666
Q ss_pred Ccc-ccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCc
Q 043978 196 FSG-EIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPS 274 (683)
Q Consensus 196 ~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 274 (683)
+.+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 554 3555666666666666666666655566666666666666666666655555566666666666666666655555
Q ss_pred cccCCC-CCcEEEccCCccc
Q 043978 275 WLFTLP-SLVSVNLAWNKLT 293 (683)
Q Consensus 275 ~l~~l~-~L~~L~L~~n~i~ 293 (683)
.+..++ +|+.|++++|.+.
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEE
T ss_pred HHHhhhccCCEEEccCCCee
Confidence 555553 5555555555554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=233.97 Aligned_cols=265 Identities=25% Similarity=0.309 Sum_probs=137.6
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEcc
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 288 (683)
.++.|+++++.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|+.|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4677777777766 4455443 566667776666663 332 3456666666666665 3333 44566666666
Q ss_pred CCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCCC
Q 043978 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368 (683)
Q Consensus 289 ~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~ 368 (683)
+|.++.... .+++|+.|++++|.+++ +|. .+++|++|++++|.+..++. .+++
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~---------------~l~~L~~L~Ls~N~l~~l~~--------~~~~ 162 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV---------------LPPGLQELSVSDNQLASLPA--------LPSE 162 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSC-CCC---------------CCTTCCEEECCSSCCSCCCC--------CCTT
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCc-CCC---------------CCCCCCEEECcCCcCCCcCC--------ccCC
Confidence 665554332 34455555555555541 221 12445555555554433321 1233
Q ss_pred ccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCC
Q 043978 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS 448 (683)
Q Consensus 369 L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 448 (683)
|+.|++++|.++.++ ..+++|+.|++++|.+++ ++..+++
T Consensus 163 --------------------------------------L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~l~~-l~~~~~~ 202 (622)
T 3g06_A 163 --------------------------------------LCKLWAYNNQLTSLP-MLPSGLQELSVSDNQLAS-LPTLPSE 202 (622)
T ss_dssp --------------------------------------CCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred --------------------------------------CCEEECCCCCCCCCc-ccCCCCcEEECCCCCCCC-CCCccch
Confidence 444444444444433 333444455555554443 1122344
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 449 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
|+.|++++|.+.. +|. .+++|+.|++++|.++ .+|. .+++|+.|++++|+++.+.. .+++|+.|+++
T Consensus 203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~-~lp~----~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls 269 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPM----LPSGLLSLSVY 269 (622)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred hhEEECcCCcccc-cCC---CCCCCCEEEccCCccC-cCCC----CCCcCcEEECCCCCCCcCCc----ccccCcEEeCC
Confidence 5555555555442 222 1355666666666665 3441 22356666666666654322 34566666666
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCccCCcccc
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 565 (683)
+|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 66666 4455566666666666666666655555444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-28 Score=270.51 Aligned_cols=142 Identities=11% Similarity=0.139 Sum_probs=83.9
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC----CCccccc-----ccccccCCCCccEEEcCCCc--cccc
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK----NNSLEGH-----IHDTFENASNIQSFDLNCNK--FEGS 535 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~ 535 (683)
...+++|++|+++.|.+++..+..+....++|+.|+++ .|.+++. .+..+.++++|+.|++++|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 34467777777766666654444555433467777775 4555542 23335567777777776543 4443
Q ss_pred Cchhhh-cCCCCcEEEccCCcCCcc-CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCC
Q 043978 536 LPRSLA-KCVKLEVVNVGNNMINDT-FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 536 ~~~~l~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~ 609 (683)
.+..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++... ......+++|++|++++|++++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI-AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH-HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH-HHHHHhcCccCeeECcCCcCCHH
Confidence 333333 367777777777777653 33445667777777777777643211 11223567777777777777643
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=230.34 Aligned_cols=282 Identities=16% Similarity=0.125 Sum_probs=211.2
Q ss_pred ccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccC
Q 043978 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNL 110 (683)
Q Consensus 31 l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l 110 (683)
-..++.....+.+++.++. +|..+. ++|++|++++|.++++.+..|.++++|++|++++|.+.... +..+.++
T Consensus 27 ~~~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l 99 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSL 99 (353)
T ss_dssp CCEECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTC
T ss_pred CCCCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---HhhcCCC
Confidence 3455666677888877754 454444 47888888888888777778888888888888888776322 2335778
Q ss_pred CCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCC-ccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCE
Q 043978 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFP-DQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRE 188 (683)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 188 (683)
++|++|++++|.++...+..+..+ ++|++|++++|++....+ ..+..+++|++|++++|..+....+ .+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTC-TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCC-ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 888888888888888766667888 888888888888885433 4677888888888888743444433 6777888888
Q ss_pred EECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccc---cCCCCCCEEEccC
Q 043978 189 LDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV---SGLLYLTNLDLFG 265 (683)
Q Consensus 189 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~ 265 (683)
|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+ .....++.+++++
T Consensus 179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred EECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 8888888887778888888888888888888764333334457888888888888876554433 3456788888888
Q ss_pred CcCcc----cCCccccCCCCCcEEEccCCcccCcCCCC-CCCCCCcEEECCCCcCcccCC
Q 043978 266 NSLQG----KVPSWLFTLPSLVSVNLAWNKLTGPIDGF-QSPNSLEEVHLEKNQIHGTIP 320 (683)
Q Consensus 266 n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-~~~~~L~~L~L~~n~i~~~~~ 320 (683)
+.+.+ .+|.++..+++|+.|++++|+++.....+ ..+++|++|++++|++.+..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 88774 35677888999999999999998766654 588999999999999886544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=233.75 Aligned_cols=261 Identities=21% Similarity=0.224 Sum_probs=138.7
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccC
Q 043978 257 YLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFS 336 (683)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~ 336 (683)
+++.|++++|.++ .+|..+. ++|+.|++++|.++.... .+++|++|++++|.++ .+|.
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--------------- 98 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--------------- 98 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC---------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC---------------
Confidence 4566666666665 4454443 566666666666654332 3456666666666655 2221
Q ss_pred CCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCc
Q 043978 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416 (683)
Q Consensus 337 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 416 (683)
.+++|++|++++|.+..++. .+++|+.|++++|.++.+|. .+++|+.|++++|.
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~lp~------------------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLPV------------------LPPGLQELSVSDNQ 152 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcCCC------------------CCCCCCEEECcCCc
Confidence 34666666666666555432 34566666666666665542 22556666666666
Q ss_pred ccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC
Q 043978 417 LTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496 (683)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 496 (683)
+++++. .+++|+.|++++|.+++.. .. +++|+.|++++|.+. .+|.. .+
T Consensus 153 l~~l~~-~~~~L~~L~L~~N~l~~l~-~~------------------------~~~L~~L~Ls~N~l~-~l~~~----~~ 201 (622)
T 3g06_A 153 LASLPA-LPSELCKLWAYNNQLTSLP-ML------------------------PSGLQELSVSDNQLA-SLPTL----PS 201 (622)
T ss_dssp CSCCCC-CCTTCCEEECCSSCCSCCC-CC------------------------CTTCCEEECCSSCCS-CCCCC----CT
T ss_pred CCCcCC-ccCCCCEEECCCCCCCCCc-cc------------------------CCCCcEEECCCCCCC-CCCCc----cc
Confidence 655432 3345555655555555322 33 445555555555554 33322 12
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+|+.|++++|.++... . .+++|+.|++++|.+++ +| ..+++|++|++++|.++. +|. .+++|+.|+++
T Consensus 202 ~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVY 269 (622)
T ss_dssp TCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred hhhEEECcCCcccccC-C---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCC
Confidence 5555555555555322 1 13455566666665553 23 334556666666666553 332 34556666666
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++. .+| ..+..+++|+.|++++|++++..|
T Consensus 270 ~N~L~-~lp--~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 270 RNQLT-RLP--ESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SSCCC-SCC--GGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCC-cCC--HHHhhccccCEEEecCCCCCCcCH
Confidence 66655 223 234455666666666666654433
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-26 Score=228.77 Aligned_cols=225 Identities=21% Similarity=0.235 Sum_probs=147.3
Q ss_pred cccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCC
Q 043978 34 LSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKL 113 (683)
Q Consensus 34 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L 113 (683)
.+++++|+|++|.+.. +|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+.++++|
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR----ALPASIASLNRL 152 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC----CCCGGGGGCTTC
T ss_pred ccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc----cCcHHHhcCcCC
Confidence 4678888888887752 5666777888888888888877 55777777888888888877765 345556777777
Q ss_pred CEEEcCCccCCcCChhhhhc---------CcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCC
Q 043978 114 SLLHLGSTNLSLIKPFSLLN---------LSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSS 184 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~---------l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 184 (683)
++|++++|.+.+..|..+.. + ++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-------------- 216 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-------------- 216 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS--------------
T ss_pred CEEECCCCCCccccChhHhhccchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC--------------
Confidence 77777776666555554433 4 55555555555555 44444555555555555544
Q ss_pred CCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEcc
Q 043978 185 PLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLF 264 (683)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 264 (683)
.+. .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 217 ----------~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 217 ----------PLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp ----------CCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred ----------CCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 444 244456666666666666666666666666666666666666666666666666666677777777
Q ss_pred CCcCcccCCccccCCCCCcEEEccCCcc
Q 043978 265 GNSLQGKVPSWLFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 265 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i 292 (683)
+|.+.+.+|..+..+++|+.+++..+.+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHH
Confidence 7666666676676777777776665544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-26 Score=232.24 Aligned_cols=251 Identities=18% Similarity=0.147 Sum_probs=129.2
Q ss_pred cCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCE
Q 043978 36 HLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSL 115 (683)
Q Consensus 36 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~ 115 (683)
+|++|++++|.+... .+..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ ...+..+.++++|++
T Consensus 53 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS---NLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS---SCCHHHHTTCTTCSE
T ss_pred cCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC---cCCHhHhCCCccCCE
Confidence 556666665555433 2234555566666666666555555555555666666666655554 111222455566666
Q ss_pred EEcCCccCCcCCh-hhhhcCcCCccEEEcCCC-cCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECC
Q 043978 116 LHLGSTNLSLIKP-FSLLNLSSTMTDLDLSGT-RIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLS 192 (683)
Q Consensus 116 L~L~~n~l~~~~~-~~l~~l~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~ 192 (683)
|++++|.+..... ..+..+ ++|++|++++| .+....+..+..+++|++|++++| .+.+..+ .+..+++|++|+++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEE
T ss_pred EECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCC
Confidence 6666655555433 345555 55666666555 344344445555566666666655 4444333 45555556666666
Q ss_pred CCcCccccCccccCCCCCCEEEccCCcccccCCCCCC---CCCCCCeeeccCccccc----cCCccccCCCCCCEEEccC
Q 043978 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTG---NLSKATEILFASNHLTG----QLPHHVSGLLYLTNLDLFG 265 (683)
Q Consensus 193 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~ 265 (683)
+|.+....+..+..+++|++|++++|.+.+..+..+. ....++.++++++.+.+ .+|..+..+++|++|++++
T Consensus 207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 5555422222233455566666666555543333222 23445555555554443 2344455555666666666
Q ss_pred CcCcccCCcc-ccCCCCCcEEEccCCccc
Q 043978 266 NSLQGKVPSW-LFTLPSLVSVNLAWNKLT 293 (683)
Q Consensus 266 n~l~~~~~~~-l~~l~~L~~L~L~~n~i~ 293 (683)
|.++ .+|.. +..+++|+.|++++|++.
T Consensus 287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6555 23333 355556666666665554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=216.06 Aligned_cols=221 Identities=18% Similarity=0.155 Sum_probs=134.4
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc-C
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN-L 483 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~-i 483 (683)
+.++.+++.++.++....++++.|++++|.+++.. +..+++|++|++++|.+.+..+..+.++++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 44555555555554444455666666666555433 2345566666666666665556666666666666666665 5
Q ss_pred CCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 484 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
....|..+..+. +|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++|.+++..+..
T Consensus 94 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 422244444433 6666666666666666666666666666666666666555555666666666666666666555555
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
|..+++|++|++++|++.+..+ ..+..+++|++|++++|++++ +|...|..+++|+.+++++|++.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHP--HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred hcCccccCEEECCCCcccccCH--hHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 6666666666666666665544 234556666666666666664 44455666666666666666664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=228.86 Aligned_cols=246 Identities=20% Similarity=0.182 Sum_probs=155.2
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLL 116 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L 116 (683)
.+.++.++..+.. +|..+. +++++|++++|.+.++.+..|.++++|++|++++|.+.... +..+.++++|++|
T Consensus 45 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~---~~~~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE---IGAFNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSS--CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC---GGGGTTCSSCCEE
T ss_pred CCEEEeCCCCcCc--CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC---hhhccCCccCCEE
Confidence 5667777766643 454444 57888888888888777777888888888888887765322 2345677777777
Q ss_pred EcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 117 HLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 117 ~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
++++|.++.+.+..|..+ ++|++|++++|.+....+..+..+++|++|++++|..+....+ .+..+++|++|++++|.
T Consensus 118 ~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp ECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred ECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 777777777766667777 7777777777777765556677777777777776533333322 45556666666666666
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCcc
Q 043978 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275 (683)
Q Consensus 196 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 275 (683)
+. .+| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..
T Consensus 197 l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 197 LR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp CS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred Cc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 55 333 3555556666666666655555555555555666666555555555555555555555555555555444444
Q ss_pred ccCCCCCcEEEccCCcc
Q 043978 276 LFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 276 l~~l~~L~~L~L~~n~i 292 (683)
+..+++|+.|++++|.+
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 45555555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=231.12 Aligned_cols=248 Identities=20% Similarity=0.172 Sum_probs=199.6
Q ss_pred CCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEE
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLL 116 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L 116 (683)
.+.++.++..+.. +|..+. +++++|++++|.++++.+..|.++++|++|++++|.+.... +..+.++++|++|
T Consensus 56 ~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L 128 (452)
T 3zyi_A 56 FSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE---VGAFNGLASLNTL 128 (452)
T ss_dssp SCEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEE
T ss_pred CcEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC---hhhccCcccCCEE
Confidence 4667777776643 454443 57888888888888888888888888888888888776332 2346788888888
Q ss_pred EcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCc
Q 043978 117 HLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSD 195 (683)
Q Consensus 117 ~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~ 195 (683)
++++|.++...+..|..+ ++|++|++++|++....+..+..+++|++|++++|..+....+ .+..+++|++|++++|.
T Consensus 129 ~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 888888888877778888 8889999988888876667788888999999888634444433 67788889999999988
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCcc
Q 043978 196 FSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSW 275 (683)
Q Consensus 196 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 275 (683)
+.+ +| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..
T Consensus 208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 874 33 5788889999999999998888888899999999999999998888888899999999999999998777777
Q ss_pred ccCCCCCcEEEccCCcccC
Q 043978 276 LFTLPSLVSVNLAWNKLTG 294 (683)
Q Consensus 276 l~~l~~L~~L~L~~n~i~~ 294 (683)
+..+++|+.|++++|.+..
T Consensus 286 ~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp STTCTTCCEEECCSSCEEC
T ss_pred hccccCCCEEEccCCCcCC
Confidence 8889999999999997754
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=216.04 Aligned_cols=220 Identities=20% Similarity=0.217 Sum_probs=154.2
Q ss_pred CcCcEEECCCCcccccC---CCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCc-ccCCCCccccCCCCCCEEE
Q 043978 405 KSLIDLDLSNNFLTHIA---LHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNK-LSGQIPPYICSLSSLKYLS 477 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~---~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~ 477 (683)
++++.|++++|.++.+. +..+++|++|++++|.+++. .+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 34555555555554443 22445555555555555543 23345666777777775 6655577788888888888
Q ss_pred cCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCC
Q 043978 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIN 557 (683)
Q Consensus 478 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 557 (683)
+++|.+.+..|..+..+. +|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.
T Consensus 112 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 888888754455555544 8888888888888777777888888888888888888776677888888888888888888
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccc
Q 043978 558 DTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQAT 629 (683)
Q Consensus 558 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n 629 (683)
+..|.+|..+++|+.|++++|++.+..+ ..+..+++|++|++++|++.+..+...+ +..++.+....+
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~ 258 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSS 258 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCH--HHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEEC
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCH--HHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccC
Confidence 8778888888888888888888876432 3356788888888888888876664433 233444444333
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=230.14 Aligned_cols=246 Identities=24% Similarity=0.187 Sum_probs=213.6
Q ss_pred EEEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEE
Q 043978 10 IGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL 89 (683)
Q Consensus 10 ~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 89 (683)
..++.++ ..++ .++. .+ .+++++|+|++|.+... .+..|.++++|++|++++|.+.++.+..|.++++|++|
T Consensus 46 ~~v~c~~--~~l~-~iP~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVR--KNLR-EVPD--GI--STNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL 117 (440)
T ss_dssp CEEECCS--CCCS-SCCS--CC--CTTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred CEEEeCC--CCcC-cCCC--CC--CCCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence 4556555 5554 3444 33 26899999999998766 56789999999999999999999989999999999999
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCC-cCCCCCCccCCCCCCCcEEEcc
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT-RIQGNFPDQIFLLPNLRVLYLC 168 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~l~ 168 (683)
++++|.++.... ..+..+++|++|++++|.+....+..|..+ ++|++|++++| .+....+..+..+++|++|+++
T Consensus 118 ~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 118 ELFDNRLTTIPN---GAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp ECCSSCCSSCCT---TTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred ECCCCcCCeeCH---hHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence 999998873332 346899999999999999999988899999 99999999995 4554445678999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccC
Q 043978 169 GNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQL 248 (683)
Q Consensus 169 ~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 248 (683)
+| .+. .++.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|+++...
T Consensus 194 ~n-~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 194 MC-NLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp TS-CCS-SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CC-cCc-cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 99 665 3467888999999999999999888999999999999999999999988999999999999999999999888
Q ss_pred CccccCCCCCCEEEccCCcCc
Q 043978 249 PHHVSGLLYLTNLDLFGNSLQ 269 (683)
Q Consensus 249 ~~~l~~l~~L~~L~l~~n~l~ 269 (683)
+..+..+++|+.|++++|.+.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 888999999999999999876
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=229.33 Aligned_cols=246 Identities=23% Similarity=0.253 Sum_probs=199.2
Q ss_pred CCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccE
Q 043978 61 ELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTD 140 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~ 140 (683)
..+.++.++..++.+ |..+. +++++|++++|.+.... +..+.++++|++|++++|.+..+.+..|..+ ++|++
T Consensus 55 ~~~~v~c~~~~l~~i-P~~~~--~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~ 127 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-PQGIP--SNTRYLNLMENNIQMIQ---ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL-ASLNT 127 (452)
T ss_dssp SSCEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCE
T ss_pred CCcEEEECCCCcCcc-CCCCC--CCccEEECcCCcCceEC---HHHcCCCCCCCEEECCCCccCCcChhhccCc-ccCCE
Confidence 456788888877755 44443 68899999998887432 3346888999999999999988888888888 89999
Q ss_pred EEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCcCcccc-CccccCCCCCCEEEccCC
Q 043978 141 LDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEI-PYSIGNLLFLETVDITYC 218 (683)
Q Consensus 141 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 218 (683)
|++++|+++...+..+..+++|++|++++| .+....+ .+..+++|+.|++++|...+.+ +..|..+++|++|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 999999998776777888999999999998 6665544 6788899999999885433344 446888999999999999
Q ss_pred cccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCC
Q 043978 219 NFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG 298 (683)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 298 (683)
.+.+. | .+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|+++...+.
T Consensus 207 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 207 NIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp CCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 88743 3 577888999999999999888888899999999999999999888888888899999999999988875544
Q ss_pred -CCCCCCCcEEECCCCcCc
Q 043978 299 -FQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 299 -~~~~~~L~~L~L~~n~i~ 316 (683)
+..+++|++|++++|++.
T Consensus 285 ~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SSTTCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEccCCCcC
Confidence 447889999999999875
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-25 Score=222.38 Aligned_cols=234 Identities=17% Similarity=0.131 Sum_probs=178.7
Q ss_pred CCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCc
Q 043978 59 LKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTM 138 (683)
Q Consensus 59 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L 138 (683)
..++++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+..+ |..+..+ ++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~----~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l-~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM----ELPDTMQQFAGLETLTLARNPLRAL-PASIASL-NRL 152 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC----CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGC-TTC
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc----chhHHHhccCCCCEEECCCCccccC-cHHHhcC-cCC
Confidence 357777788777776 34556666777777777777665 2333345666666666666666633 5556666 666
Q ss_pred cEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCC
Q 043978 139 TDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYC 218 (683)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 218 (683)
++|++++|.+.+.+|..+.. ..+. ..+..+++|++|++++|.+. .+|..+..+++|++|++++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred CEEECCCCCCccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 66666665555555543322 0000 12344778888888888888 78889999999999999999
Q ss_pred cccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC-cCC
Q 043978 219 NFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG-PID 297 (683)
Q Consensus 219 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~ 297 (683)
.+.+ +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+ .+.
T Consensus 217 ~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 217 PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 9984 66789999999999999999999999999999999999999999999999999999999999999998877 445
Q ss_pred CCCCCCCCcEEECCCCcCc
Q 043978 298 GFQSPNSLEEVHLEKNQIH 316 (683)
Q Consensus 298 ~~~~~~~L~~L~L~~n~i~ 316 (683)
.+..+++++.+++..+.+.
T Consensus 296 ~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 296 LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGSCTTCEEECCGGGSC
T ss_pred HHhhccCceEEeCCHHHHH
Confidence 5669999999999988765
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-26 Score=231.29 Aligned_cols=153 Identities=18% Similarity=0.131 Sum_probs=98.7
Q ss_pred CCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccc-cCCCCccEEEcCCCcccccCchhhhcCCCCcE
Q 043978 470 LSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTF-ENASNIQSFDLNCNKFEGSLPRSLAKCVKLEV 548 (683)
Q Consensus 470 l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 548 (683)
+++|++|++++|.+.+..+..+..+. +|++|++++|++++..+..+ ..+++|+.|++++|.+++. + ....+++|++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCE
Confidence 34566666666666533333333333 66677777776666555544 3567777777777777644 2 2334677777
Q ss_pred EEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccc
Q 043978 549 VNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 549 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~ 628 (683)
|++++|.+++. |..+..+++|+.|++++|++.. +| ..+..+++|+.|++++|++.+..+..++..++.|+.+++++
T Consensus 196 L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 196 LDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-EC--TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred EECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hh--hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777777753 3446777777788888777764 33 23466778888888888887333446788888888888874
Q ss_pred c
Q 043978 629 T 629 (683)
Q Consensus 629 n 629 (683)
+
T Consensus 272 ~ 272 (317)
T 3o53_A 272 V 272 (317)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-26 Score=229.28 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcE
Q 043978 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEV 548 (683)
Q Consensus 469 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 548 (683)
.+++|++|++++|.++ .++... . .++|++|++++|++++..+. |..+++|+.|++++|+++ .+|..+..+++|++
T Consensus 167 ~l~~L~~L~L~~N~l~-~~~~~~-~-l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIY-DVKGQV-V-FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp GTTTCCEEECTTSCCC-EEECCC-C-CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred ccCcCCEEECCCCcCc-cccccc-c-cccCCEEECCCCcCCcchhh-hcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 4566666666666665 233221 1 23666666666666654333 566666666666666666 34555666666677
Q ss_pred EEccCCcCC-ccCCccccCCCCCCEEEccCCc
Q 043978 549 VNVGNNMIN-DTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 549 L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
|++++|++. +..|.++..+++|+.+++++|.
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 777766666 4555666666666666666443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-25 Score=224.70 Aligned_cols=241 Identities=17% Similarity=0.143 Sum_probs=165.3
Q ss_pred CCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC-----------CCCCceEEeCC
Q 043978 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH-----------PWKNIRTLDLR 434 (683)
Q Consensus 366 ~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-----------~~~~L~~L~l~ 434 (683)
.++|+.|++++|.+ .+|..+. ..++.|++++|.++..... .+++|++|+++
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~-----------------~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 103 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFT-----------------DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHH-----------------HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCCceeEeeccccc-ccHHHHH-----------------HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEcc
Confidence 44566666666665 5554321 1155566666665432211 35667777777
Q ss_pred CCCCCccCC-----CCCCCCcEEEccCCcccCCCCccccCC-----CCCCEEEcCCCcCCCCCChhhhhccCcccEEECC
Q 043978 435 NNKIQGSIL-----VPPPSTEVFLVSNNKLSGQIPPYICSL-----SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504 (683)
Q Consensus 435 ~n~l~~~~~-----~~~~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 504 (683)
+|++++..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|++.+..|..+..+. +|++|+++
T Consensus 104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls 181 (312)
T 1wwl_A 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLS 181 (312)
T ss_dssp EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS-SCCEEECC
T ss_pred CCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC-CCCEEECC
Confidence 776664332 3567788888888888766 6666666 8888888888888755556666554 88888888
Q ss_pred CCccccc--cccc--ccCCCCccEEEcCCCcccc---cCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEcc
Q 043978 505 NNSLEGH--IHDT--FENASNIQSFDLNCNKFEG---SLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILR 576 (683)
Q Consensus 505 ~n~l~~~--~~~~--~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~ 576 (683)
+|++.+. .+.. +..+++|+.|++++|++++ .....+..+++|++|++++|.+.+..| ..+..+++|++|+++
T Consensus 182 ~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 8887654 2223 3778888888888888873 222445677888889998888887664 455677888899999
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeeec
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQYM 634 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~~ 634 (683)
+|+++ .+|... . ++|++||+++|++++. |. |..+++|+.+++++|+++..
T Consensus 262 ~N~l~-~ip~~~--~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 262 FTGLK-QVPKGL--P--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TSCCS-SCCSSC--C--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTTCC
T ss_pred CCccC-hhhhhc--c--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCCCC
Confidence 88887 444322 2 7888889999988864 64 78888888888888877543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=203.30 Aligned_cols=204 Identities=20% Similarity=0.213 Sum_probs=155.2
Q ss_pred CcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCC
Q 043978 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n 481 (683)
...+.++++++.++.++....++++.|++++|.+++.. +..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 35788999999988877665677888888888887544 346778888888888888666666778888888888888
Q ss_pred cCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC
Q 043978 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561 (683)
Q Consensus 482 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 561 (683)
.+. .+|...+...++|++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+
T Consensus 96 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 887 4444433333488888888888887777778888888888888888886666667888888888888888887666
Q ss_pred ccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 562 CWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
..|..+++|++|++++|++.+..+ ..+..+++|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPE--GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCH--HHhccccCCCEEEecCCCeeCCCc
Confidence 677788888888888888875433 234567788888888888876554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=231.24 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=79.1
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccccccc-CCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE-NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|+.|++++|.+.+..|..+..+. +|+.|++++|.+++..+..|. .+++|+.|++++|.+++..+ +..+++|++|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence 4455555555555433333333332 555555555555554444443 45555555555555554321 2235566666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccc
Q 043978 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQ 627 (683)
Q Consensus 550 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~ 627 (683)
++++|.+++..| .+..+++|+.|++++|.+.+. | ..+..+++|+.|++++|++.+..+..++..++.|+.+++.
T Consensus 197 ~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p--~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-E--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-C--TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-c--hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 666666654333 355566666666666666542 2 1234556666666666666522233566666666666664
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-27 Score=263.61 Aligned_cols=429 Identities=14% Similarity=0.120 Sum_probs=208.4
Q ss_pred cEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCccc--CC-C------------CCCCCCCCEEECCCCcCccccCcc
Q 043978 139 TDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGY--LP-K------------CNWSSPLRELDLSLSDFSGEIPYS 203 (683)
Q Consensus 139 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~-~------------~~~~~~L~~L~L~~~~~~~~~~~~ 203 (683)
+.++++.+... .....+..+++|++|+++++...... .+ . ...+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 46666655332 12234567889999999988433211 11 1 123556777777776665544444
Q ss_pred cc-CCCCCCEEEccCC-ccccc-CCCCCCCCCCCCeeeccCccccccCCcccc----CCCCCCEEEccCCc--Cccc-CC
Q 043978 204 IG-NLLFLETVDITYC-NFMGS-IPTSTGNLSKATEILFASNHLTGQLPHHVS----GLLYLTNLDLFGNS--LQGK-VP 273 (683)
Q Consensus 204 ~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----~l~~L~~L~l~~n~--l~~~-~~ 273 (683)
+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+.++. .+++|++|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 43 4667777777666 33321 222233566666666666665544433332 44566666666664 1110 11
Q ss_pred ccccCCCCCcEEEccCC-cccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEE-eCCCCCc
Q 043978 274 SWLFTLPSLVSVNLAWN-KLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFL-DLSNNNL 351 (683)
Q Consensus 274 ~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~l~~n~l 351 (683)
.....+++|+.|++++| .+.+....+..+++|++|+++.+... ..+..+. .+. ..+.++++|+.+ .+.+...
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~----~l~-~~l~~~~~L~~Ls~~~~~~~ 278 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-VRPDVYS----GLS-VALSGCKELRCLSGFWDAVP 278 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-CCHHHHH----HHH-HHHHTCTTCCEEECCBTCCG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-cchhhHH----HHH-HHHhcCCCcccccCCcccch
Confidence 11223466666666665 22221112224555666665444210 0000000 000 134455555555 2322221
Q ss_pred cccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCC----CCCC
Q 043978 352 LSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH----PWKN 427 (683)
Q Consensus 352 ~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~ 427 (683)
..+ ......+++|++|++++|.+..-. .......+++|+.|++++| ++..... .+++
T Consensus 279 ~~l-----~~~~~~~~~L~~L~L~~~~l~~~~-------------l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 279 AYL-----PAVYSVCSRLTTLNLSYATVQSYD-------------LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp GGG-----GGGHHHHTTCCEEECTTCCCCHHH-------------HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hhH-----HHHHHhhCCCCEEEccCCCCCHHH-------------HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111 011113455555555555433100 0000134455555555544 2211110 2344
Q ss_pred ceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccc-cCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC--
Q 043978 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYI-CSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK-- 504 (683)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~-- 504 (683)
|++|+++++.-.+ ....+.+++.....+ .++++|+.|.++.|.+++..+..+....++|+.|+++
T Consensus 340 L~~L~L~~~~~~g------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 340 LRELRVFPSEPFV------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp CCEEEEECSCTTC------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred CCEEEEecCcccc------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 4444442211000 001122221111112 2367777777766666644344444333477777777
Q ss_pred C----Cccccc-----ccccccCCCCccEEEcCCCcccccCchhhhc-CCCCcEEEccCCcCCccCCccc-cCCCCCCEE
Q 043978 505 N----NSLEGH-----IHDTFENASNIQSFDLNCNKFEGSLPRSLAK-CVKLEVVNVGNNMINDTFPCWL-GSLPLLKIL 573 (683)
Q Consensus 505 ~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 573 (683)
+ +.+++. .+..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ ..+++|+.|
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L 486 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKL 486 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEE
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEE
Confidence 3 344421 222355677788888866 555444444544 7778888888887766544444 467788888
Q ss_pred EccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 574 ILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 574 ~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++++|++++... ......+++|++|++++|+++
T Consensus 487 ~L~~n~~~~~~~-~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 487 EIRDCPFGDKAL-LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEESCSCCHHHH-HHTGGGGGGSSEEEEESSCCB
T ss_pred ECcCCCCcHHHH-HHHHHhCCCCCEEeeeCCCCC
Confidence 888887743211 112234677888888888774
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-27 Score=257.56 Aligned_cols=106 Identities=13% Similarity=0.011 Sum_probs=55.0
Q ss_pred CEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccC------------CHHHHHccCCCCCEEEcCCccCCcCChhh
Q 043978 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQR------------TFDLLASNLTKLSLLHLGSTNLSLIKPFS 130 (683)
Q Consensus 63 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 130 (683)
+.++++.+... .....+.++++|++|+++++....... .++.....+++|++|+++++.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555443321 122345667778888887764221100 12233455667777777766665554555
Q ss_pred hh-cCcCCccEEEcCCC-cCCCC-CCccCCCCCCCcEEEccCC
Q 043978 131 LL-NLSSTMTDLDLSGT-RIQGN-FPDQIFLLPNLRVLYLCGN 170 (683)
Q Consensus 131 l~-~l~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n 170 (683)
+. .+ ++|++|++++| .++.. ++.....+++|++|++++|
T Consensus 125 l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 166 (594)
T 2p1m_B 125 IAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES 166 (594)
T ss_dssp HHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC
Confidence 54 34 66666666666 33321 2222235566666666665
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=196.30 Aligned_cols=203 Identities=24% Similarity=0.289 Sum_probs=144.4
Q ss_pred CceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC
Q 043978 427 NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN 506 (683)
Q Consensus 427 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 506 (683)
..+.++++++.++......++++++|++++|++.+..+..|.++++|++|++++|.+. .+|...+...++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCC
Confidence 4567777777777655445667777777777777666667777777777777777776 555554433347777777777
Q ss_pred cccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCC
Q 043978 507 SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCK 586 (683)
Q Consensus 507 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 586 (683)
++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE- 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-
Confidence 7777666777777777777777777776666677777777777777777776665667777777777777777765433
Q ss_pred CccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeee
Q 043978 587 SITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQY 633 (683)
Q Consensus 587 ~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~ 633 (683)
..+..+++|++|++++|++++ +|...|..++.|+.+++++|++.-
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -hHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence 234566777777777777774 555667777777777777777643
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.9e-25 Score=221.95 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCCCCEEEcCCccCCcCChhhh--hcCcCCccEEEcCCCcCCC
Q 043978 110 LTKLSLLHLGSTNLSLIKPFSL--LNLSSTMTDLDLSGTRIQG 150 (683)
Q Consensus 110 l~~L~~L~L~~n~l~~~~~~~l--~~l~~~L~~L~l~~n~i~~ 150 (683)
+++|++|++++|.+++..|..+ ..+ ++|++|++++|++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 135 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWAT 135 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCS-CCCSEEEEESCBCSS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcC-CCccEEEccCCCCcc
Confidence 4444444444444444333332 333 444444444444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=198.78 Aligned_cols=208 Identities=22% Similarity=0.210 Sum_probs=161.2
Q ss_pred cCCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEc
Q 043978 402 KGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 478 (683)
..++++++++++++.++.++....+.++.|++++|.+++.. +..+++|++|++++|.+++..+ ...+++|++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 45566666666666666665554566667777777666432 3456777777777777775433 267889999999
Q ss_pred CCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 479 SHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 479 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
++|.+. .+|..+..+. +|++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++|+++.
T Consensus 85 s~N~l~-~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 999998 7887776665 89999999999998888889999999999999999998877888899999999999999987
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 559 TFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 559 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
..+..|..+++|+.|++++|++.. +| ......+.|+.+++++|++.+.....+|.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~-ip--~~~~~~~~L~~l~L~~Np~~C~c~~~~l~ 217 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYT-IP--KGFFGSHLLPFAFLHGNPWLCNCEILYFR 217 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-CC--TTTTTTCCCSEEECCSCCBCCSGGGHHHH
T ss_pred cCHHHhcCcCCCCEEECCCCcCCc-cC--hhhcccccCCeEEeCCCCccCcCccHHHH
Confidence 777778889999999999999984 33 34456778999999999998765544443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=201.29 Aligned_cols=220 Identities=22% Similarity=0.210 Sum_probs=160.8
Q ss_pred EEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccC---CC
Q 043978 371 KLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSI---LV 444 (683)
Q Consensus 371 ~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~---~~ 444 (683)
.++..+..+.++|.. -.++++.|++++|.++++.. ..+++|++|++++|.+++.. +.
T Consensus 11 ~~~c~~~~l~~ip~~-----------------l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-----------------LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73 (276)
T ss_dssp EEECTTSCCSSCCSS-----------------SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred eEEecCCCccccCCC-----------------CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHcc
Confidence 455666666666642 12468889999998887643 46678888888888887543 34
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccc-ccccccCCCCcc
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGH-IHDTFENASNIQ 523 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 523 (683)
.+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+. +|++|++++|++++. .|..|..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~ 152 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCC
Confidence 677888888888888877777788888888888888888743333455444 888888888888764 477788888888
Q ss_pred EEEcCCCcccccCchhhhcCCCCc----EEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEE
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLE----VVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRII 599 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 599 (683)
.|++++|++++..+..+..+++|+ +|++++|.+.+..+..+. ..+|+.|++++|++.+..+ ..+..+++|++|
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 229 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD--GIFDRLTSLQKI 229 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT--TTTTTCCSCCEE
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH--hHhcccccccEE
Confidence 888888888877777777666666 788888888765555444 3478888888888875533 334667888888
Q ss_pred eCCCCcCCCCCc
Q 043978 600 DLSRNEFKDFLP 611 (683)
Q Consensus 600 ~ls~n~~~~~~p 611 (683)
++++|++.+.+|
T Consensus 230 ~l~~N~~~c~c~ 241 (276)
T 2z62_A 230 WLHTNPWDCSCP 241 (276)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCcccccCC
Confidence 888888887666
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=221.11 Aligned_cols=239 Identities=22% Similarity=0.174 Sum_probs=202.7
Q ss_pred CCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC
Q 043978 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415 (683)
Q Consensus 336 ~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 415 (683)
..+++|+.|++++|.+..+++ ..+..+++|+.|++++|.+...+. +..+++|+.|++++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----------------l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD----------------LESLSTLRTLDLNNN 90 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE----------------CTTCTTCCEEECCSS
T ss_pred ccCCCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc----------------cccCCCCCEEEecCC
Confidence 455689999999999876643 356799999999999998875433 278899999999999
Q ss_pred cccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhcc
Q 043978 416 FLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495 (683)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 495 (683)
.+++++.. ++|+.|++++|.+++..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+....
T Consensus 91 ~l~~l~~~--~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 91 YVQELLVG--PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp EEEEEEEC--TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred cCCCCCCC--CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 99987643 8999999999999988888889999999999999998888999999999999999999977777776444
Q ss_pred CcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 496 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEEC
T ss_pred CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEc
Confidence 599999999999997743 4458999999999999996554 59999999999999999985 6777999999999999
Q ss_pred cCCcCc-ccCCCCccccCCCCCcEEeCC
Q 043978 576 RSNRFY-GPLCKSITTFSFQALRIIDLS 602 (683)
Q Consensus 576 ~~n~l~-~~~~~~~~~~~l~~L~~L~ls 602 (683)
++|++. +.+| ..+..++.|+.++++
T Consensus 245 ~~N~l~c~~~~--~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLR--DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHH--HHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchH--HHHHhCCCCcEEecc
Confidence 999987 3332 334567778877775
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=206.00 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=144.5
Q ss_pred CcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc
Q 043978 405 KSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN 482 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~ 482 (683)
++|+.|++++|.++... +..+++|+.|++++|.+++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 34444444444444332 223444444555554444321 2345666677777777776666778888888888888888
Q ss_pred CCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCc
Q 043978 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPC 562 (683)
Q Consensus 483 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 562 (683)
+.+..+..+..+. +|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+.
T Consensus 121 l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 121 LQSLPDGVFDKLT-NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp CCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCccCHHHhccCC-CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 8844333344444 888888888888887777788888899999999988877777788888899999999988887777
Q ss_pred cccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchh
Q 043978 563 WLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA 620 (683)
Q Consensus 563 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~ 620 (683)
.+..+++|+.|++++|++.+ .++.|+.++++.|.++|.+|. .++.+..
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~---------~~~~l~~l~~~~n~~~g~ip~-~~~~~~~ 247 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDC---------TCPGIRYLSEWINKHSGVVRN-SAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCC---------CTTTTHHHHHHHHHTGGGBBC-TTSCBCG
T ss_pred HHhCCcCCCEEEccCCCccc---------cCcHHHHHHHHHHhCCCcccC-cccccCC
Confidence 78888899999999888753 356788888888888888883 3444443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=195.84 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=176.6
Q ss_pred CCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEEC
Q 043978 424 PWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHL 503 (683)
Q Consensus 424 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 503 (683)
.++++++++++++.++......++.+++|++++|.+.+..+..|..+++|++|++++|.++ .++.. .. .++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~-l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GT-LPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SC-CTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CC-CCcCCEEEC
Confidence 5678999999999999877667889999999999999888889999999999999999998 45443 33 459999999
Q ss_pred CCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++|+++ ..|..+..+++|+.|++++|++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++...
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999998 4567889999999999999999988888999999999999999999988888889999999999999999865
Q ss_pred CCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeee
Q 043978 584 LCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQY 633 (683)
Q Consensus 584 ~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~ 633 (683)
.+ ..+..+++|++|++++|+++ .+|...| ....|+.+++++|++.-
T Consensus 164 ~~--~~~~~l~~L~~L~L~~N~l~-~ip~~~~-~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PA--GLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CT--TTTTTCTTCCEEECCSSCCC-CCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred CH--HHhcCcCCCCEEECCCCcCC-ccChhhc-ccccCCeEEeCCCCccC
Confidence 43 34567899999999999999 6886544 56689999999999853
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=190.05 Aligned_cols=203 Identities=25% Similarity=0.222 Sum_probs=145.0
Q ss_pred CCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEECCCCcCccccCccccCCCCCCEEE
Q 043978 136 STMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVD 214 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 214 (683)
++|++|++++|.+++..+..+..+++|++|++++| .+....+ .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 56677777777766555556666777777777776 4444443 566667777777777777766666777788888888
Q ss_pred ccCCcccccCCCCCCCCCCCCeeeccCcccccc-CCccccCCCCCCEEEccCCcCcccCCccccCCCCCc----EEEccC
Q 043978 215 ITYCNFMGSIPTSTGNLSKATEILFASNHLTGQ-LPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLV----SVNLAW 289 (683)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 289 (683)
+++|.+.+..+..++.+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 888877766666677788888888888887763 477788888888888888888766666666655555 788888
Q ss_pred CcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCc
Q 043978 290 NKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351 (683)
Q Consensus 290 n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 351 (683)
|.+....+......+|++|++++|.+++. |. ..+..+++|+.|++++|.+
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~-----------~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLKSV-PD-----------GIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCSCC-CT-----------TTTTTCCSCCEEECCSSCB
T ss_pred CcccccCccccCCCcccEEECCCCceeec-CH-----------hHhcccccccEEEccCCcc
Confidence 88877665555556788888888887732 22 2466778888888888874
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=186.32 Aligned_cols=177 Identities=20% Similarity=0.215 Sum_probs=137.4
Q ss_pred EEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc
Q 043978 430 TLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509 (683)
Q Consensus 430 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 509 (683)
.++++++.++......++.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+. +|++|++++|+++
T Consensus 18 ~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 96 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA 96 (251)
T ss_dssp EEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC
T ss_pred EEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCccc
Confidence 344444444433333345566666666666666777788889999999999998855555555554 8999999999998
Q ss_pred ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCcc
Q 043978 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSIT 589 (683)
Q Consensus 510 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 589 (683)
+..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|++.+..+ ..
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~ 174 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GA 174 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH--HH
Confidence 8888888889999999999999987777778889999999999999987777788889999999999999886544 34
Q ss_pred ccCCCCCcEEeCCCCcCCCC
Q 043978 590 TFSFQALRIIDLSRNEFKDF 609 (683)
Q Consensus 590 ~~~l~~L~~L~ls~n~~~~~ 609 (683)
+..+++|++|++++|++.+.
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTT
T ss_pred HhCCCCCCEEEeeCCceeCC
Confidence 56788999999999999876
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=194.57 Aligned_cols=228 Identities=18% Similarity=0.120 Sum_probs=148.0
Q ss_pred ccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCC
Q 043978 33 RLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTK 112 (683)
Q Consensus 33 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~ 112 (683)
.++++..+++..+.+.+. .....+++|+.|+++++.+... ..+..+++|++|++++|.+.. + ..+..+++
T Consensus 17 ~~~~l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~----~-~~l~~l~~ 86 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD----I-SALKELTN 86 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC----C-GGGTTCTT
T ss_pred hHHHHHHHHhcCcccccc---cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC----c-hhhcCCCC
Confidence 455566667766665332 2355677777888877777644 346777777777777776652 1 13567777
Q ss_pred CCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCCCCEEEC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSPLRELDL 191 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L 191 (683)
|++|++++|.+++..+..+..+ ++|++|++++|++++..+..+..+++|++|++++| .+....+ .+..+++|++|++
T Consensus 87 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 87 LTYLILTGNQLQSLPNGVFDKL-TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCccCccChhHhcCC-cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEEC
Confidence 7777777777777766667777 77777777777777665666677777777777777 5554443 3456666666666
Q ss_pred CCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 043978 192 SLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGK 271 (683)
Q Consensus 192 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 271 (683)
++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|+.++++.|.+.+.
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGG
T ss_pred CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCc
Confidence 6666665555556666677777777766666555556666666666666665542 234566666666666666
Q ss_pred CCccccCC
Q 043978 272 VPSWLFTL 279 (683)
Q Consensus 272 ~~~~l~~l 279 (683)
+|.+++.+
T Consensus 238 ip~~~~~~ 245 (272)
T 3rfs_A 238 VRNSAGSV 245 (272)
T ss_dssp BBCTTSCB
T ss_pred ccCccccc
Confidence 66555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-22 Score=210.76 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=113.4
Q ss_pred CCCCEEEcCCCcCCC-CCC---hhhhhccCcccEEECCCCcccc-----cccccccCCCCccEEEcCCCccc----ccCc
Q 043978 471 SSLKYLSLSHNNLSG-TIP---PCLGNFTTQLITLHLKNNSLEG-----HIHDTFENASNIQSFDLNCNKFE----GSLP 537 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~-~~~---~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~ 537 (683)
++|++|++++|++.. .++ ..+.... +|++|++++|+++. ..+..+..+++|+.|+|++|.++ ..+|
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 678888888887762 233 2344444 88888888888873 23447778889999999999885 4567
Q ss_pred hhhhcCCCCcEEEccCCcCCcc----CCcccc--CCCCCCEEEccCCcCcc----cCCCCccccCCCCCcEEeCCCCcCC
Q 043978 538 RSLAKCVKLEVVNVGNNMINDT----FPCWLG--SLPLLKILILRSNRFYG----PLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 538 ~~l~~l~~L~~L~l~~n~l~~~----~~~~l~--~l~~L~~L~l~~n~l~~----~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
..+..+++|++|++++|.+++. ++..+. .+++|++|++++|++.. .++. .....+++|++|++++|+++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT-VIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH-HHHHHCTTCCEEECTTSBSC
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH-HHHhcCCCceEEEccCCcCC
Confidence 7888899999999999998865 455663 38999999999999876 2331 11145789999999999999
Q ss_pred CCCc--HHHHhcchhhccccccc
Q 043978 608 DFLP--RRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 608 ~~~p--~~~~~~~~~L~~l~l~~ 628 (683)
+..| ......++.++..++..
T Consensus 317 ~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 317 EEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TTSHHHHHHHHHHHHHTCCEECC
T ss_pred cchhHHHHHHHHhhhcCcchhhh
Confidence 7765 45556667776665544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=187.70 Aligned_cols=191 Identities=23% Similarity=0.303 Sum_probs=109.7
Q ss_pred cCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcC
Q 043978 402 KGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls 479 (683)
..+++|+.|++++|.++.++ +..+++|+.|++++|.+++.. +..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 45677888888888777653 235667777777777666433 33455666666666665542 245556666666666
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
+|.+. .++. +..+. +|++|++++|++++..+ +..+++|+.|++++|++++. +. +..+++|++|++++|.+++.
T Consensus 116 ~n~l~-~~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQIT-DVTP-LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCC-CCGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCC-Cchh-hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 66665 2332 33333 56666666666654432 55556666666666666533 22 55566666666666666543
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 560 FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
.+ +..+++|+.|++++|++.+.. .+..+++|++|++++|+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG----GGTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCccc----cccCCCCCCEEEccCCeee
Confidence 32 555666666666666655432 1345566666666666665
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-20 Score=183.37 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=137.5
Q ss_pred CCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCc
Q 043978 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416 (683)
Q Consensus 337 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 416 (683)
.+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++.. ..+++|+.|++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~~----------------~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAPL----------------KNLTKITELELSGNP 96 (308)
T ss_dssp HHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGGG----------------TTCCSCCEEECCSCC
T ss_pred HcCCcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChhH----------------ccCCCCCEEEccCCc
Confidence 455666666666665443 2244556666666666655554431 445555555555555
Q ss_pred ccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccC
Q 043978 417 LTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTT 496 (683)
Q Consensus 417 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~ 496 (683)
+++.. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+. .++. +..+.
T Consensus 97 l~~~~--------------------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~-~~~~-l~~l~- 151 (308)
T 1h6u_A 97 LKNVS--------------------AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQIT-NISP-LAGLT- 151 (308)
T ss_dssp CSCCG--------------------GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCC-CCGG-GGGCT-
T ss_pred CCCch--------------------hhcCCCCCCEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-cCcc-ccCCC-
Confidence 54432 122455666666666666643 24888999999999999998 4444 55554
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 152 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 152 NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 99999999999987644 8899999999999999986543 8899999999999999987653 8899999999999
Q ss_pred CCcCcc
Q 043978 577 SNRFYG 582 (683)
Q Consensus 577 ~n~l~~ 582 (683)
+|++.+
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 999875
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-22 Score=204.96 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCEEEcCCCcCCCC----CChhhhhccCcccEEECCCCccccccc----ccccCCCCccEEEcCCCcccccCc------
Q 043978 472 SLKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKNNSLEGHIH----DTFENASNIQSFDLNCNKFEGSLP------ 537 (683)
Q Consensus 472 ~L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~------ 537 (683)
+|++|++++|.+.+. ++..+....++|++|++++|++++..+ ..+..+++|+.|++++|.+.+..+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 566666666655421 333444333356666666666654332 334555666666666666432222
Q ss_pred -hhhhcCCCCcEEEccCCcCCcc
Q 043978 538 -RSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 538 -~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
..+..+++|++||+++|.+.+.
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 2445555666666666666554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-20 Score=177.46 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=146.8
Q ss_pred CcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCC
Q 043978 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n 481 (683)
...+.++++++.++.++....+.++.|++++|.+++.. +..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34566677777666666555566777777777776543 345678888888888888888888999999999999999
Q ss_pred cCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC
Q 043978 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP 561 (683)
Q Consensus 482 ~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 561 (683)
.+. .+|...+...++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+
T Consensus 94 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 998 4554443334599999999999998888889999999999999999998777789999999999999999998888
Q ss_pred ccccCCCCCCEEEccCCcCccc
Q 043978 562 CWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
..|..+++|+.|++++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 8899999999999999998765
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-22 Score=208.79 Aligned_cols=233 Identities=18% Similarity=0.205 Sum_probs=169.8
Q ss_pred CCCcCcEEECCCCccccc-------CCCCCCCceEEeCCCCCCC---ccCC----------CCCCCCcEEEccCCcccC-
Q 043978 403 GWKSLIDLDLSNNFLTHI-------ALHPWKNIRTLDLRNNKIQ---GSIL----------VPPPSTEVFLVSNNKLSG- 461 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~-------~~~~~~~L~~L~l~~n~l~---~~~~----------~~~~~L~~L~l~~n~i~~- 461 (683)
.+++|+.|++++|.++.. .+..+++|+.|++++|.+. +..+ ..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 344555555555555442 1234555666666654332 2111 356777788888887776
Q ss_pred ---CCCccccCCCCCCEEEcCCCcCCCCCChhhhhcc------------CcccEEECCCCcccc-ccc---ccccCCCCc
Q 043978 462 ---QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT------------TQLITLHLKNNSLEG-HIH---DTFENASNI 522 (683)
Q Consensus 462 ---~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~------------~~L~~L~l~~n~l~~-~~~---~~~~~l~~L 522 (683)
.++..+..+++|++|++++|.+.+..+..+.... ++|++|++++|+++. ..+ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 3566788999999999999998643333333321 499999999999973 333 467788999
Q ss_pred cEEEcCCCcccc-----cCchhhhcCCCCcEEEccCCcCC----ccCCccccCCCCCCEEEccCCcCccc----CCCCcc
Q 043978 523 QSFDLNCNKFEG-----SLPRSLAKCVKLEVVNVGNNMIN----DTFPCWLGSLPLLKILILRSNRFYGP----LCKSIT 589 (683)
Q Consensus 523 ~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~ 589 (683)
+.|++++|+++. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|+|++|++.+. ++....
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999999973 33447889999999999999996 55778889999999999999998754 221111
Q ss_pred ccCCCCCcEEeCCCCcCCC----CCcHHHHhcchhhcccccccceeeecc
Q 043978 590 TFSFQALRIIDLSRNEFKD----FLPRRNFTSMEAMKNVDEQATRLQYMG 635 (683)
Q Consensus 590 ~~~l~~L~~L~ls~n~~~~----~~p~~~~~~~~~L~~l~l~~n~~~~~~ 635 (683)
...+++|++|++++|++++ .+|...+.++++|+.+++++|++...+
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 1348999999999999996 488776788999999999999987544
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=193.50 Aligned_cols=195 Identities=21% Similarity=0.233 Sum_probs=89.5
Q ss_pred CcCcEEECCCCcccccCC-----CCCCCceEEeCCCCCCCccCC-------CCCCCCcEEEccCCcccCCCCccccCCCC
Q 043978 405 KSLIDLDLSNNFLTHIAL-----HPWKNIRTLDLRNNKIQGSIL-------VPPPSTEVFLVSNNKLSGQIPPYICSLSS 472 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~ 472 (683)
++|++|++++|.+++..+ ..+++|++|++++|.+++..+ ..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666665554322 234455555555555553211 12445555555555555455555555555
Q ss_pred CCEEEcCCCcCCCC--CC--hhhhhccCcccEEECCCCcccccccc---cccCCCCccEEEcCCCcccccCchhhhcC--
Q 043978 473 LKYLSLSHNNLSGT--IP--PCLGNFTTQLITLHLKNNSLEGHIHD---TFENASNIQSFDLNCNKFEGSLPRSLAKC-- 543 (683)
Q Consensus 473 L~~L~Ls~n~i~~~--~~--~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-- 543 (683)
|++|++++|++.+. ++ ..+..+ ++|++|++++|+++..... .+..+++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554321 11 111122 2455555555555422111 23444555555555555554444444443
Q ss_pred -CCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 544 -VKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 544 -~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|++|++++|.++ .+|..+. ++|++|++++|++++. | .+..+++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~---~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P---QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C---CTTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c---hhhhCCCccEEECcCCCCC
Confidence 35555555555554 2333332 4555555555555432 1 1234445555555555544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.1e-21 Score=194.66 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=168.2
Q ss_pred CcCcEEECCCCcccccCCC--CCCCceEEeCCCCCCCcc----CCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEc
Q 043978 405 KSLIDLDLSNNFLTHIALH--PWKNIRTLDLRNNKIQGS----ILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSL 478 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~l~~~----~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 478 (683)
+.++.+++++|.+.+.... .+++|++|++++|.+++. ....+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 5566777777766655332 456777777777776542 2346778888888888877777778888999999999
Q ss_pred CCC-cCCCC-CChhhhhccCcccEEECCCC-ccccc-ccccccCCC-CccEEEcCCC--ccc-ccCchhhhcCCCCcEEE
Q 043978 479 SHN-NLSGT-IPPCLGNFTTQLITLHLKNN-SLEGH-IHDTFENAS-NIQSFDLNCN--KFE-GSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 479 s~n-~i~~~-~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~ 550 (683)
++| .+++. ++..+..+. +|++|++++| .+++. .+..+..++ +|+.|++++| .++ +..+..+..+++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 999 56532 454455554 8999999999 88764 466778888 9999999999 454 34567788899999999
Q ss_pred ccCCc-CCccCCccccCCCCCCEEEccCCc-CcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc-hhhcccccc
Q 043978 551 VGNNM-INDTFPCWLGSLPLLKILILRSNR-FYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM-EAMKNVDEQ 627 (683)
Q Consensus 551 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~-~~L~~l~l~ 627 (683)
+++|. +++..+..+..+++|+.|++++|. +.... ...+..+++|++|++++| ++...+..+ ..++.++++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~ 301 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--LLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN 301 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG--GGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH--HHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe
Confidence 99998 777777788899999999999996 22110 113567899999999998 344556666 458888899
Q ss_pred cceeeecccccee
Q 043978 628 ATRLQYMGHAYYD 640 (683)
Q Consensus 628 ~n~~~~~~~~~~~ 640 (683)
.|+++.+.+..+.
T Consensus 302 ~n~l~~~~~~~~~ 314 (336)
T 2ast_B 302 CSHFTTIARPTIG 314 (336)
T ss_dssp CCCSCCTTCSSCS
T ss_pred cccCccccCCccc
Confidence 9988776655543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.5e-20 Score=173.90 Aligned_cols=178 Identities=19% Similarity=0.204 Sum_probs=137.7
Q ss_pred EeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccc
Q 043978 431 LDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG 510 (683)
Q Consensus 431 L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 510 (683)
++.+++.++......++++++|++++|.+.+..+..+..+++|++|++++|++. .++...+...++|++|++++|++++
T Consensus 12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCc
Confidence 344444444333334455666666666666566667888999999999999998 5555443334489999999999998
Q ss_pred cccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccc
Q 043978 511 HIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITT 590 (683)
Q Consensus 511 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 590 (683)
..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------- 161 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------- 161 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------
Confidence 87788899999999999999999777777899999999999999998777777889999999999999875
Q ss_pred cCCCCCcEEeCCCCcCCCCCcHHHHhcch
Q 043978 591 FSFQALRIIDLSRNEFKDFLPRRNFTSME 619 (683)
Q Consensus 591 ~~l~~L~~L~ls~n~~~~~~p~~~~~~~~ 619 (683)
..++.|++|+++.|+++|.+|. .++.++
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~-~~~~l~ 189 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRN-SAGSVA 189 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBC-TTSSBC
T ss_pred cCCCCHHHHHHHHHhCCceeec-cCcccc
Confidence 3456889999999999999983 444443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-21 Score=199.03 Aligned_cols=257 Identities=16% Similarity=0.160 Sum_probs=121.6
Q ss_pred eeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCC----ccCcCCC-CCCEEeCCCCcCcccc-CCHHHHHccC-CC
Q 043978 40 LNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVP----SEISHLS-KLTHLGLSCRVLTIEQ-RTFDLLASNL-TK 112 (683)
Q Consensus 40 L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~-~L~~L~ls~n~~~~~~-~~~~~~~~~l-~~ 112 (683)
++++.|.+++. .|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.... ..+...+... ++
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45666665543 44444555557777777776666554 5555666 6666666666555221 1122222222 66
Q ss_pred CCEEEcCCccCCcCChhhhhc----CcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCC-CCCCC
Q 043978 113 LSLLHLGSTNLSLIKPFSLLN----LSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNW-SSPLR 187 (683)
Q Consensus 113 L~~L~L~~n~l~~~~~~~l~~----l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~L~ 187 (683)
|++|++++|.+++..+..+.. ++++|++|++++|.+++..+..+.. .+.. .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCcee
Confidence 666666666665555443322 2245666666666555433322211 0111 12344
Q ss_pred EEECCCCcCccc----cCccccCCC-CCCEEEccCCcccccCCCCC----CCC-CCCCeeeccCcccccc----CCcccc
Q 043978 188 ELDLSLSDFSGE----IPYSIGNLL-FLETVDITYCNFMGSIPTST----GNL-SKATEILFASNHLTGQ----LPHHVS 253 (683)
Q Consensus 188 ~L~L~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~l~ 253 (683)
+|++++|.+.+. ++..+..++ +|++|++++|.+.+..+..+ ..+ ++|++|++++|.+.+. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 444444444321 122223333 55555555555544333222 222 3555555555555442 222233
Q ss_pred C-CCCCCEEEccCCcCcccCC----ccccCCCCCcEEEccCCcccC--------cCCCCCCCCCCcEEECCCCcCcc
Q 043978 254 G-LLYLTNLDLFGNSLQGKVP----SWLFTLPSLVSVNLAWNKLTG--------PIDGFQSPNSLEEVHLEKNQIHG 317 (683)
Q Consensus 254 ~-l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~--------~~~~~~~~~~L~~L~L~~n~i~~ 317 (683)
. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+.. ....+..+++|++|++++|.+.+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3 2356666666666554332 223345556666666655221 11233345555555555555543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-21 Score=199.28 Aligned_cols=222 Identities=18% Similarity=0.150 Sum_probs=120.4
Q ss_pred CCeeeCCCCCCCCCCCCcccCCC--CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 37 LQSLNLAFNNFLGSRISPEFGRL--KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 37 L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
++.++++++.+. +..+..+ +++++|++++|.+.+..+. +.++++|++|++++|.+. ...++..+..+++|+
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~--~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE--VSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC--HHHHHHHHTTBCCCS
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC--HHHHHHHHhhCCCCC
Confidence 566777766542 3345555 6677777777776666444 445677777777776543 112555666677777
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCC-cCCCC-CCccCCCCCCCcEEEccCCCCCccc-CC-CCCCCC-CCCEE
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT-RIQGN-FPDQIFLLPNLRVLYLCGNIHLTGY-LP-KCNWSS-PLREL 189 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~l~~n~~~~~~-~~-~~~~~~-~L~~L 189 (683)
+|++++|.+++..+..++.+ ++|++|++++| .+++. ++..+..+++|++|++++|..+.+. ++ .+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 77777776665556666666 67777777766 45431 3344555666666666655222211 11 233444 55555
Q ss_pred ECCCC--cCc-cccCccccCCCCCCEEEccCCc-ccccCCCCCCCCCCCCeeeccCcc-ccccCCccccCCCCCCEEEcc
Q 043978 190 DLSLS--DFS-GEIPYSIGNLLFLETVDITYCN-FMGSIPTSTGNLSKATEILFASNH-LTGQLPHHVSGLLYLTNLDLF 264 (683)
Q Consensus 190 ~L~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~ 264 (683)
++++| .++ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 55555 232 2334444555556666665555 443444445555555555555553 211111234445555555555
Q ss_pred CC
Q 043978 265 GN 266 (683)
Q Consensus 265 ~n 266 (683)
+|
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 55
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=172.63 Aligned_cols=196 Identities=18% Similarity=0.141 Sum_probs=135.4
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc-ccccCCccccCCCCCCEEEccC-CcCcccCCccccCCCCCcEEE
Q 043978 209 FLETVDITYCNFMGSIPTSTGNLSKATEILFASNH-LTGQLPHHVSGLLYLTNLDLFG-NSLQGKVPSWLFTLPSLVSVN 286 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~ 286 (683)
++++|++++|++.+..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67777777777776666677777777777777775 6666666777777788888877 777766666777777788888
Q ss_pred ccCCcccCcCCCCCCCCCCc---EEECCCC-cCcccCCccchhccCcccccccCCCCCCC-EEeCCCCCccccccccccc
Q 043978 287 LAWNKLTGPIDGFQSPNSLE---EVHLEKN-QIHGTIPSSLFQLCGTIRFDQFSKLKNLQ-FLDLSNNNLLSFTSSGNID 361 (683)
Q Consensus 287 L~~n~i~~~~~~~~~~~~L~---~L~L~~n-~i~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~l~~~~~~~ 361 (683)
+++|+++... .+..+++|+ +|++++| .+.+ +....|..+++|+ .|++++|+++.++..
T Consensus 112 l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~------------i~~~~~~~l~~L~~~L~l~~n~l~~i~~~---- 174 (239)
T 2xwt_C 112 IFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTS------------IPVNAFQGLCNETLTLKLYNNGFTSVQGY---- 174 (239)
T ss_dssp EEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCE------------ECTTTTTTTBSSEEEEECCSCCCCEECTT----
T ss_pred CCCCCCcccc-ccccccccccccEEECCCCcchhh------------cCcccccchhcceeEEEcCCCCCcccCHh----
Confidence 8877777633 366666666 8888887 6662 2223567778888 888888887665431
Q ss_pred cccCCCCccEEEcccCC-CCCcChhhhhccccccccCCCcccCC-CcCcEEECCCCcccccCCCCCCCceEEeCCCC
Q 043978 362 IKYSLPSLLKLSFSNCN-VSEFPSFLRNSEKIHGRISKHDSKGW-KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNN 436 (683)
Q Consensus 362 ~~~~~~~L~~L~l~~~~-l~~~p~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n 436 (683)
.+.. ++|+.|++++|+ ++.+|.. .+.++ ++|+.|++++|.++.++...+++|+.|+++++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~--------------~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKD--------------AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTT--------------TTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHH--------------HhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 2222 677888888774 6655432 22556 77778888877777776666777777777665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=184.38 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=128.4
Q ss_pred CCccEEEcCCCcCCCCCCccC--CCCCCCcEEEccCCCCCcccCC-----CCCCCCCCCEEECCCCcCccccCccccCCC
Q 043978 136 STMTDLDLSGTRIQGNFPDQI--FLLPNLRVLYLCGNIHLTGYLP-----KCNWSSPLRELDLSLSDFSGEIPYSIGNLL 208 (683)
Q Consensus 136 ~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~ 208 (683)
++|++|++++|.+.+..|..+ ..+++|++|++++| .+.+..+ .+..+++|++|++++|.+.+..+..+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 445555555555555555544 55555566666555 3333221 223456666777777777666666777777
Q ss_pred CCCEEEccCCccccc----CCCCCCCCCCCCeeeccCccccccCC--c-cccCCCCCCEEEccCCcCcccCCccccCC--
Q 043978 209 FLETVDITYCNFMGS----IPTSTGNLSKATEILFASNHLTGQLP--H-HVSGLLYLTNLDLFGNSLQGKVPSWLFTL-- 279 (683)
Q Consensus 209 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l-- 279 (683)
+|++|++++|++.+. .+..++.+++|++|++++|.++.... . .++.+++|++|++++|.+.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 777777777776531 12334667778888888887753211 1 24667788888888888876666666655
Q ss_pred -CCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCccc
Q 043978 280 -PSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLS 353 (683)
Q Consensus 280 -~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 353 (683)
++|++|++++|+++..+..+. ++|++|++++|++++. | .+..+++|+.|++++|.++.
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~-------------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-P-------------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-C-------------CTTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-c-------------hhhhCCCccEEECcCCCCCC
Confidence 688888888888876544442 6888888888888732 2 24567888888888888643
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=173.59 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=59.9
Q ss_pred CCCCCCEEECCC-CcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCC---eeeccCc-cccccCCccccCCC
Q 043978 182 WSSPLRELDLSL-SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKAT---EILFASN-HLTGQLPHHVSGLL 256 (683)
Q Consensus 182 ~~~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~ 256 (683)
.+++|++|++++ |.+....+..|..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.+++
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence 333444444443 33433333344444455555555444443 332 44444444 5555555 44444444455555
Q ss_pred CCC-EEEccCCcCcccCCccccCCCCCcEEEccCCc-ccCcCC-CCCCC-CCCcEEECCCCcCc
Q 043978 257 YLT-NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNK-LTGPID-GFQSP-NSLEEVHLEKNQIH 316 (683)
Q Consensus 257 ~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~-~~~~~-~~L~~L~L~~n~i~ 316 (683)
+|+ +|++++|.++...+..+.. ++|+.|++++|+ ++...+ .+..+ ++|++|++++|+++
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 555 5555555554222222222 455555555553 444322 23344 55555555555554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=163.51 Aligned_cols=163 Identities=20% Similarity=0.143 Sum_probs=118.7
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 530 (683)
.+++++|.++. +|..+ .+.+++|++++|.+.+..+...+...++|+.|++++|++++..+..|.++++|+.|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44444444442 34433 2346778888888774434333333348888888888888777778888888888888888
Q ss_pred cccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCC
Q 043978 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFL 610 (683)
Q Consensus 531 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 610 (683)
++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP--GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT--TTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH--HHhcCCCCCCEEEecCcCCcCCC
Confidence 8887777778888888888888888888778888888888888888888877655 34567888888888888888777
Q ss_pred cHHHHhcc
Q 043978 611 PRRNFTSM 618 (683)
Q Consensus 611 p~~~~~~~ 618 (683)
+-.+|..+
T Consensus 170 ~l~~l~~~ 177 (220)
T 2v70_A 170 YLAWLGEW 177 (220)
T ss_dssp GGHHHHHH
T ss_pred chHHHHHH
Confidence 75555443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=183.09 Aligned_cols=189 Identities=22% Similarity=0.301 Sum_probs=134.6
Q ss_pred cCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCC
Q 043978 406 SLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSG 485 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~ 485 (683)
+++.|++++|.+++++...+++|+.|++++|.++... ..+++|++|++++|.+++ +|. +.. +|+.|++++|.+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 5666777776666655444566777777777776433 556777777777777776 555 544 88888888888874
Q ss_pred CCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcccc
Q 043978 486 TIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565 (683)
Q Consensus 486 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 565 (683)
+|. ..++|+.|++++|+++++ |. .+++|+.|++++|++++ +|. |. ++|++|++++|.|+ .+|. |.
T Consensus 135 -lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 135 -LPE----LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp -CCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred -CCC----cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 666 235888888888888864 33 56788899999998886 555 55 78899999999887 4555 54
Q ss_pred CCCCC-------CEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchh
Q 043978 566 SLPLL-------KILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEA 620 (683)
Q Consensus 566 ~l~~L-------~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~ 620 (683)
. +| +.|++++|+++. +| ..+..+++|+.|++++|++++.+| ..|..+..
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~~-lp--~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~ 255 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRITH-IP--ENILSLDPTCTIILEDNPLSSRIR-ESLSQQTA 255 (571)
T ss_dssp ----------CCEEEECCSSCCCC-CC--GGGGGSCTTEEEECCSSSCCHHHH-HHHHHHHH
T ss_pred H--hhhcccccceEEecCCCccee-cC--HHHhcCCCCCEEEeeCCcCCCcCH-HHHHHhhc
Confidence 3 66 899999998874 44 234568889999999999987766 44555544
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-18 Score=161.57 Aligned_cols=142 Identities=19% Similarity=0.197 Sum_probs=83.3
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
++++.|++++|.+.+..+..+..+ ++|+.|++++|++++..+..|.++++|+.|+|++|+++...+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTC-TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCC-CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 345555555555552222233333 2566666666666655566666666666666666666655555566666666666
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 551 VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 551 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
+++|.+.+..|..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+-.+|
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK--GTFSPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH--HHHhCCCCCCEEEeCCCCcCCCCccHHH
Confidence 66666666666666666666666666666665433 2344566667777777776655444444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=161.35 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=100.9
Q ss_pred eEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcc
Q 043978 429 RTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508 (683)
Q Consensus 429 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l 508 (683)
+.++++++.++......+++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+. +|++|++++|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCcC
Confidence 4566666666655444556677777777777666556666677777777777777644455555544 677777777777
Q ss_pred cccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 509 EGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 509 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+...+..|.++++|+.|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6666666666777777777777776666666777777777777777776666666666777777777777664
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-18 Score=161.65 Aligned_cols=152 Identities=19% Similarity=0.223 Sum_probs=118.7
Q ss_pred EeCCCCCCCccCCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccc
Q 043978 431 LDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509 (683)
Q Consensus 431 L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 509 (683)
+++++|.++......++.+++|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+. +|++|++++|+++
T Consensus 16 l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLE 94 (220)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC
T ss_pred eEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccC
Confidence 3444444433322233444555566666655533 4578899999999999999844444565554 8999999999999
Q ss_pred ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 510 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
+..+..|.++++|++|++++|++++..|..|..+++|++|++++|.+++..|..|..+++|+.|++++|++...
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 88888899999999999999999988889999999999999999999988888999999999999999998754
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=159.20 Aligned_cols=186 Identities=20% Similarity=0.225 Sum_probs=139.9
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCC
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 484 (683)
+.++.+++.++.++....+++++|++++|.+++.. +..+++|++|++++|++.+..+..|..+++|++|++++|.+.
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 34555555555555555556666666666665433 235677888888888888666677889999999999999998
Q ss_pred CCCChh-hhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 485 GTIPPC-LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 485 ~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
.+|.. +..+ ++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 90 -~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 90 -SLPNGVFDKL-TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp -CCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred -ccCHhHhcCc-cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 45544 4444 499999999999998888889999999999999999997777778999999999999997753
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCC
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 608 (683)
.+++|+.|+++.|++++.+|... +.++. ++..|...+
T Consensus 163 --~~~~l~~L~~~~n~~~g~ip~~~--~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHSGVVRNSA--GSVAP----DSAKCSGSG 199 (208)
T ss_dssp --CTTTTHHHHHHHHHCTTTBBCTT--SSBCT----TCSBBTTTC
T ss_pred --CCCCHHHHHHHHHhCCceeeccC--ccccC----CccccccCC
Confidence 46789999999999998887433 33333 455555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=174.26 Aligned_cols=180 Identities=20% Similarity=0.149 Sum_probs=146.1
Q ss_pred eEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCcccc-CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCc
Q 043978 429 RTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC-SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507 (683)
Q Consensus 429 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 507 (683)
+.++++++.++......++.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+. +|++|+|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCc
Confidence 5789999999876666677899999999999988777787 899999999999999844444565554 89999999999
Q ss_pred ccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc---cCCCCCCEEEccCCcCcccC
Q 043978 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL---GSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~~ 584 (683)
++...+..|.++++|+.|+|++|++++..|..|..+++|++|++++|.++...+..| ..+++|+.|+|++|++....
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 998888889999999999999999998888899999999999999999987555555 56899999999999987543
Q ss_pred CCCccccCCCC--CcEEeCCCCcCCCCCc
Q 043978 585 CKSITTFSFQA--LRIIDLSRNEFKDFLP 611 (683)
Q Consensus 585 ~~~~~~~~l~~--L~~L~ls~n~~~~~~p 611 (683)
+ ..+..++. ++.|++++|++.+...
T Consensus 180 ~--~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 180 L--TDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp H--HHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred H--HHhhhccHhhcceEEecCCCccCCcC
Confidence 2 23345555 4789999999987655
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=177.07 Aligned_cols=174 Identities=22% Similarity=0.211 Sum_probs=142.7
Q ss_pred CcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCC---C-CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCc
Q 043978 407 LIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSIL---V-PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNN 482 (683)
Q Consensus 407 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~ 482 (683)
-+.++++++.++.++....+.++.|++++|.+++... . .+++|++|++++|++.+..+..|.++++|++|+|++|+
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 3678999999988877666778999999999886443 3 67889999999999998888889999999999999999
Q ss_pred CCCCCCh-hhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhh---hcCCCCcEEEccCCcCCc
Q 043978 483 LSGTIPP-CLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL---AKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 483 i~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~ 558 (683)
+. .++. .+..+ ++|+.|+|++|++.+..+..|.++++|+.|+|++|++++..+..| ..+++|++|++++|.++.
T Consensus 100 l~-~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 100 LH-TLDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CC-EECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CC-cCCHHHhCCC-cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 98 4554 44444 499999999999998888899999999999999999986655555 568999999999999987
Q ss_pred cCCccccCCCC--CCEEEccCCcCcc
Q 043978 559 TFPCWLGSLPL--LKILILRSNRFYG 582 (683)
Q Consensus 559 ~~~~~l~~l~~--L~~L~l~~n~l~~ 582 (683)
..+..+..++. ++.|++++|++..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 66677777777 4889999998863
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=177.67 Aligned_cols=217 Identities=16% Similarity=0.060 Sum_probs=153.7
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCcccCCCC-ccccCCCCCCE-EEcCCCc
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNKLSGQIP-PYICSLSSLKY-LSLSHNN 482 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~i~~~~~-~~l~~l~~L~~-L~Ls~n~ 482 (683)
+.++.++++++.++..-.+++++|++++|+|+.. .+..+++|++|++++|++.+.++ .+|.+++++++ +.+++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 5678888888887765567888899988888754 34567888888888888765443 56778887765 5556677
Q ss_pred CCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCC-CcccccCchhhhcCC-CCcEEEccCCcCCccC
Q 043978 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC-NKFEGSLPRSLAKCV-KLEVVNVGNNMINDTF 560 (683)
Q Consensus 483 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~ 560 (683)
+. .++...+...++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.+.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 92 LL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp CC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 77 44433333334888888888888877776777777788888855 567666666677664 5888888888887544
Q ss_pred CccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccc
Q 043978 561 PCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 561 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~ 628 (683)
+..| ..++|+.|++++|...+.+|. ..+..+++|++||+++|+|+ .+|...|.+++.|+.++..+
T Consensus 171 ~~~f-~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 171 NSAF-NGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp TTSS-TTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTT
T ss_pred hhhc-cccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCC
Confidence 4444 456788888876444444442 34567888888888888887 57767777777777766543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=168.72 Aligned_cols=240 Identities=18% Similarity=0.190 Sum_probs=131.0
Q ss_pred CEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCC
Q 043978 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193 (683)
Q Consensus 114 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 193 (683)
++++.+++.++.+ |..+ ++++++|++++|+++...+.+|.++++|++|++++| .+...++
T Consensus 12 ~~v~C~~~~Lt~i-P~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~--------------- 71 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIE--------------- 71 (350)
T ss_dssp TEEEEESTTCCSC-CTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEEC---------------
T ss_pred CEEEecCCCCCcc-CcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccC---------------
Confidence 4566666666655 3322 356677777777766544455666666666666666 3222211
Q ss_pred CcCccccCccccCCCCCCE-EEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccC-CcCccc
Q 043978 194 SDFSGEIPYSIGNLLFLET-VDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFG-NSLQGK 271 (683)
Q Consensus 194 ~~~~~~~~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~ 271 (683)
+..|.+++++.+ +.+..|++....+..|..+++|++|++++|.+....+..+.....+..+++.+ +.+...
T Consensus 72 -------~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 72 -------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp -------TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred -------hhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 123444444443 33334455544455555555555555555555544444444445555666644 344433
Q ss_pred CCccccCCC-CCcEEEccCCcccCcCCCCCCCCCCcEEECCC-CcCcccCCccchhccCcccccccCCCCCCCEEeCCCC
Q 043978 272 VPSWLFTLP-SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK-NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349 (683)
Q Consensus 272 ~~~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 349 (683)
.+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++ .+|. +.|..+++|+.|++++|
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~-----------~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPN-----------DVFHGASGPVILDISRT 212 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCT-----------TTTTTEECCSEEECTTS
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCH-----------HHhccCcccchhhcCCC
Confidence 344444443 46667777777666555555556677777764 3343 3333 35667777777777777
Q ss_pred CccccccccccccccCCCCccEEEcccC-CCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC
Q 043978 350 NLLSFTSSGNIDIKYSLPSLLKLSFSNC-NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415 (683)
Q Consensus 350 ~l~~l~~~~~~~~~~~~~~L~~L~l~~~-~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 415 (683)
+++.++.. .+.+|+.|.+.++ .++.+|.. ..+++|+.++++++
T Consensus 213 ~l~~lp~~-------~~~~L~~L~~l~~~~l~~lP~l----------------~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 213 RIHSLPSY-------GLENLKKLRARSTYNLKKLPTL----------------EKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCCSS-------SCTTCCEEECTTCTTCCCCCCT----------------TTCCSCCEEECSCH
T ss_pred CcCccChh-------hhccchHhhhccCCCcCcCCCc----------------hhCcChhhCcCCCC
Confidence 77666432 2445566655444 34454432 55566666666543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=179.30 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=69.1
Q ss_pred CcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCC
Q 043978 407 LIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT 486 (683)
Q Consensus 407 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 486 (683)
|+.|++++|.++.++ ..+++|+.|++++|.+++... ...+|++|++++|.+++ +|. .+++|+.|++++|.++ .
T Consensus 82 L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~ 154 (571)
T 3cvr_A 82 ITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-M 154 (571)
T ss_dssp CSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-C
T ss_pred CCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-c
Confidence 444444444444333 333444444444444443211 22244444444444443 222 3445555555555554 2
Q ss_pred CChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC-------cEEEccCCcCCcc
Q 043978 487 IPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL-------EVVNVGNNMINDT 559 (683)
Q Consensus 487 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~ 559 (683)
+|. .+++|+.|++++|+++++ |. |. ++|+.|++++|+++ .+|. |.. +| ++|++++|.|+ .
T Consensus 155 lp~----~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~ 221 (571)
T 3cvr_A 155 LPE----LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-H 221 (571)
T ss_dssp CCC----CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-C
T ss_pred CCC----cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-e
Confidence 443 123455555555555442 22 33 45555555555554 2333 322 34 55555555554 2
Q ss_pred CCccccCCCCCCEEEccCCcCccc
Q 043978 560 FPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
+|..+..+++|+.|++++|++++.
T Consensus 222 lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 222 IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 444444455555555555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=165.37 Aligned_cols=194 Identities=22% Similarity=0.340 Sum_probs=136.0
Q ss_pred cCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcC
Q 043978 406 SLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i 483 (683)
.+..+.+..+.+++.. ...+++|+.|++++|.+.+.. ...+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444455555555542 235678899999998887542 2356788888888888876443 77788888888888887
Q ss_pred CCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 484 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
. .++. +..+. +|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+.+..+
T Consensus 103 ~-~~~~-l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 103 K-DLSS-LKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp C-CGGG-GTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred C-CChh-hccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 6 3443 54444 788888888887764 4577778888888888888754 567788888888888888876544
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
+..+++|+.|++++|++.+. + .+..+++|+.|++++|++.+ .|...+
T Consensus 174 l~~l~~L~~L~L~~N~i~~l-~---~l~~l~~L~~L~l~~n~i~~-~~~~~~ 220 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDL-R---ALAGLKNLDVLELFSQECLN-KPINHQ 220 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBC-G---GGTTCTTCSEEEEEEEEEEC-CCEECC
T ss_pred hcCCCccCEEECCCCcCCCC-h---hhccCCCCCEEECcCCcccC-Cccccc
Confidence 77788888888888887653 1 35677788888888888764 443333
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=157.86 Aligned_cols=137 Identities=18% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 550 (683)
++|++|++++|.+.+..|..+..+. +|+.|++++|++....+..|..+++|+.|++++|++++..+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 4455555555555433333333332 555555555555544445555666666666666666655555566666666666
Q ss_pred ccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 551 VGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 551 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|++.+..+
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeCCCccCCcc
Confidence 6666665 455556666666666666666654332 234556667777777777765544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=161.70 Aligned_cols=170 Identities=29% Similarity=0.348 Sum_probs=117.4
Q ss_pred CCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccCC
Q 043978 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSIL 443 (683)
Q Consensus 365 ~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 443 (683)
.+++|+.|++++|.+..++.. ..+++|+.|++++|.++++. +..+++|+.|++++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~----------------~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~------ 101 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGI----------------QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK------ 101 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTG----------------GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC------
T ss_pred hcCcccEEEccCCCcccChhH----------------hcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCc------
Confidence 345555555555555544332 44555666666666555443 2234444444444444
Q ss_pred CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCcc
Q 043978 444 VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523 (683)
Q Consensus 444 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 523 (683)
+.+ + ..+..+++|++|++++|.+.+ + ..+..+. +|+.|++++|++++. ..+..+++|+
T Consensus 102 ---------------l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 102 ---------------VKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLP-QLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp ---------------CCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ---------------CCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCC-CCCEEEccCCcCCcc--hhhccCCCCC
Confidence 332 1 347778888888888888873 4 3455554 889999999988865 5688889999
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
.|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++..
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99999999986544 88899999999999999864 3 48889999999999998864
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-17 Score=156.01 Aligned_cols=153 Identities=23% Similarity=0.288 Sum_probs=115.3
Q ss_pred ceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCc
Q 043978 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNS 507 (683)
Q Consensus 428 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 507 (683)
.+.++++++.++......+++|++|++++|.+.+..+..|..+++|++|++++|.+. .+|...+...++|+.|++++|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCc
Confidence 456777777777666666678888888888888777777888888888888888886 5554443333478888888888
Q ss_pred ccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 508 LEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 508 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|++..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 87777777778888888888888887 567777788888888888888876666667778888888888887754
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=160.21 Aligned_cols=126 Identities=25% Similarity=0.302 Sum_probs=95.7
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+++|++|++++|.+.+.. . +..+++|++|++++|++. .+|.... ++|+.|++++|++++. ..+..+++|+.|
T Consensus 62 l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L 133 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEIL 133 (263)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEE
Confidence 344444455555555333 2 778888999999999887 4554322 4899999999988865 358888999999
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++++|++++. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|++...
T Consensus 134 ~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 134 SIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999998854 3 688899999999999999876 5688889999999999988754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=152.87 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEE
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFD 526 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 526 (683)
+++++|++++|.+. .+| .+..+++|++|++++|.+. .+ ..+..+. +|++|++++|++++..+..|..+++|+.|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444444444444 333 4666777777777777654 22 3444443 777777777777766666677777777777
Q ss_pred cCCCcccccCchhhhcCCCCcEEEccCCc-CCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCc
Q 043978 527 LNCNKFEGSLPRSLAKCVKLEVVNVGNNM-INDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNE 605 (683)
Q Consensus 527 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~ 605 (683)
+++|++++..|..+..+++|++|++++|. +.+ +| .+..+++|++|++++|++.+.. .+..+++|++|++++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcc
Confidence 77777776666677777777777777776 543 33 4667777777777777765421 34566777777777777
Q ss_pred CC
Q 043978 606 FK 607 (683)
Q Consensus 606 ~~ 607 (683)
|.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 64
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-18 Score=183.20 Aligned_cols=170 Identities=25% Similarity=0.310 Sum_probs=115.8
Q ss_pred cCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcC
Q 043978 402 KGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479 (683)
Q Consensus 402 ~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls 479 (683)
..++.|+.|++++|.+..++ +..+++|+.|++++|.+++.. +..+++|+.|++++|.+.+. ..+..+++|+.|+|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLE 117 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECT
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEec
Confidence 45677888888888877663 346677888888888776543 33567777777777777642 256677777777777
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
+|.+.+ ++ .+..+. +|+.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.+.
T Consensus 118 ~N~l~~-l~-~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 118 HNGISD-IN-GLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TSCCCC-CG-GGGGCT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCC-Cc-cccCCC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 777763 32 344443 777777777777654 456677777777777777765444 67777777777777777653
Q ss_pred CCccccCCCCCCEEEccCCcCcc
Q 043978 560 FPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
..+..+++|+.|+|++|++.+
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEEC
T ss_pred --hHHccCCCCCEEEccCCcCcC
Confidence 346677777777777777654
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=153.11 Aligned_cols=154 Identities=12% Similarity=0.227 Sum_probs=132.9
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 546 (683)
...+++|+.|++++|.+. .+| .+..+. +|++|++++|.+... ..+..+++|+.|++++|++++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~-~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAH-NIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCT-TCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCC-CCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 366789999999999998 677 566665 999999999977643 478899999999999999998788889999999
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEccCCc-CcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccc
Q 043978 547 EVVNVGNNMINDTFPCWLGSLPLLKILILRSNR-FYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVD 625 (683)
Q Consensus 547 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~ 625 (683)
++|++++|.+++..+..+..+++|++|++++|+ +. .++ .+..+++|++|++++|++++ ++ .+..+++|+.++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~---~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM---PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG---GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH---hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEE
Confidence 999999999998888899999999999999998 54 333 46789999999999999986 44 588999999999
Q ss_pred cccceee
Q 043978 626 EQATRLQ 632 (683)
Q Consensus 626 l~~n~~~ 632 (683)
+++|++.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 9999863
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=158.76 Aligned_cols=175 Identities=22% Similarity=0.295 Sum_probs=136.6
Q ss_pred CCCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEEC
Q 043978 425 WKNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHL 503 (683)
Q Consensus 425 ~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l 503 (683)
+.++..++++++.+++.. ...+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++. +..+. +|+.|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~-~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLT-KLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCS-SCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCC-CCCEEEC
Confidence 456777888888887654 3367889999999999885 34 6888999999999999998 4555 55554 8999999
Q ss_pred CCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 504 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
++|++++..+ +.. ++|+.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++.+.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 9999887533 233 8899999999999853 3588899999999999999865 3 588899999999999998765
Q ss_pred CCCCccccCCCCCcEEeCCCCcCCCCCcHHHHh
Q 043978 584 LCKSITTFSFQALRIIDLSRNEFKDFLPRRNFT 616 (683)
Q Consensus 584 ~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~ 616 (683)
..+..+++|+.|++++|++.+. |...+.
T Consensus 166 ----~~l~~l~~L~~L~l~~N~~~~~-~~~~~~ 193 (263)
T 1xeu_A 166 ----GGLTRLKKVNWIDLTGQKCVNE-PVKYQP 193 (263)
T ss_dssp ----TTSTTCCCCCEEEEEEEEEECC-CEECCS
T ss_pred ----HHhccCCCCCEEeCCCCcccCC-cccccc
Confidence 3456788999999999998854 544443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=146.64 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=110.8
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccc-cccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD-TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
+.+++++|.+. .+|..+. .+|++|++++|++++..+. .|..+++|+.|++++|++++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888886 6776543 3788888888888877654 57888888888888888888878888888888999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhc
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTS 617 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~ 617 (683)
+|.+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++|++.+.++..+|..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~ 149 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFNCNCHLAWFAE 149 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH--HHhhcCCCCCEEEeCCCCccCcCcchHHHH
Confidence 888888888788888889999999998887665 345678888999999999988777555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=170.42 Aligned_cols=172 Identities=20% Similarity=0.210 Sum_probs=100.9
Q ss_pred ccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccC
Q 043978 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNL 110 (683)
Q Consensus 31 l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l 110 (683)
+..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+... + .+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l----~-~l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL----S-SLKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC--T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC----T-TSTTC
T ss_pred hhcCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC----h-hhccC
Confidence 45666777777777666432 2 46667777777777777666543 66677777777777665521 1 24566
Q ss_pred CCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEE
Q 043978 111 TKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELD 190 (683)
Q Consensus 111 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 190 (683)
++|++|++++|.+... ..+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++| .+.+..+ +..+++|+.|+
T Consensus 109 ~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred CCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEE
Confidence 6666666666666654 345555 6666666666666643 44556666666666665 4443333 44555555555
Q ss_pred CCCCcCccccCccccCCCCCCEEEccCCccc
Q 043978 191 LSLSDFSGEIPYSIGNLLFLETVDITYCNFM 221 (683)
Q Consensus 191 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 221 (683)
|++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 182 Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 182 LSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 555555432 23455555555555555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=157.51 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=50.3
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc-EEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE-VVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
+|+.+++++|+++.+...+|.++++|+.+++.+| ++.+.+.+|.+|++|+ .+++.+ .++.+.+..|.++++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 5555555555555555555555555555555554 4444445555555555 555555 444444445555555555555
Q ss_pred cCCcCcccCCCCccccCCCCCcEEe
Q 043978 576 RSNRFYGPLCKSITTFSFQALRIID 600 (683)
Q Consensus 576 ~~n~l~~~~~~~~~~~~l~~L~~L~ 600 (683)
++|.+....+ ..+..+++|+.++
T Consensus 305 ~~n~i~~I~~--~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGD--ELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECT--TTTCTTCCCCEEE
T ss_pred CCCccCccch--hhhcCCcchhhhc
Confidence 5555443322 2334455555443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=139.12 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=98.1
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++++|.+. .+|..+. ++|++|++++|+++. +|..|.++++|+.|++++|++++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46777777776 6665442 367777777777763 446777777788888888877777667777778888888888
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcc
Q 043978 554 NMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSM 618 (683)
Q Consensus 554 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~ 618 (683)
|.++...+..|..+++|++|++++|++....+ ..+..+++|+.|++++|++.+..+-.+|..+
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE--GAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT--TTTTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeCh--hhhhcCccccEEEeCCCCeecCCcCHHHHHH
Confidence 88777777777777888888888887775433 2345677888888888888766665555444
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=139.27 Aligned_cols=129 Identities=29% Similarity=0.325 Sum_probs=84.8
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChh-hhhccCcccEEECCCCcccccccccccCCCCccEEEcCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPC-LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNC 529 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 529 (683)
.++++++.+. .+|..+. .++++|++++|.+.+..+.. +..+ ++|++|++++|++++..+..|.++++|+.|++++
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccC-CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3444444443 3343332 26777777777776333322 3333 3777777777777776677777777777777777
Q ss_pred CcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCccc
Q 043978 530 NKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 530 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777776666677777777777777777777777777777777777777777644
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-18 Score=186.41 Aligned_cols=104 Identities=21% Similarity=0.288 Sum_probs=46.1
Q ss_pred CCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 473 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
|+.|++++|.++ .+|. +..+. +|+.|++++|+++ .+|..|.++++|+.|+|++|++++ +| .+..+++|++|+++
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCC-CCcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 444444444444 2333 33322 4444444444444 233344444444444444444443 23 44444444444444
Q ss_pred CCcCCccC-CccccCCCCCCEEEccCCcCcc
Q 043978 553 NNMINDTF-PCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 553 ~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+|.+++.. |..++.+++|+.|++++|++.+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 44444433 4444444444444444444443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-15 Score=134.29 Aligned_cols=133 Identities=19% Similarity=0.220 Sum_probs=113.4
Q ss_pred CCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 473 LKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 473 L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
.+.++++++.+. .+|..+. ++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 567888888887 6775543 489999999999998888888999999999999999997777778999999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|.+++..+..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD--GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCH--HHhcCCcccCEEEecCCCeeccCc
Confidence 999998777778899999999999999985543 334678999999999999998766
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=136.55 Aligned_cols=134 Identities=21% Similarity=0.149 Sum_probs=90.6
Q ss_pred CCCCEEEcCCCcCC-CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLS-GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|++|++++|.+. +.+|..+..+. +|+.|++++|.+++. ..|..+++|+.|++++|++++..|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777765 45665555444 777777777777655 567777777777777777776667777777777777
Q ss_pred EccCCcCCccC-CccccCCCCCCEEEccCCcCcccCCC-CccccCCCCCcEEeCCCCcCC
Q 043978 550 NVGNNMINDTF-PCWLGSLPLLKILILRSNRFYGPLCK-SITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 550 ~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++++|.+++.. +..+..+++|+.|++++|++.+..+. ...+..+++|++|++++|++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77777776542 25667777777777777777644220 013456677777777777776
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.7e-16 Score=155.13 Aligned_cols=101 Identities=14% Similarity=0.038 Sum_probs=50.5
Q ss_pred CCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCC-EEEccCCcCcccCCCCccccCCCCCc
Q 043978 519 ASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLK-ILILRSNRFYGPLCKSITTFSFQALR 597 (683)
Q Consensus 519 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~l~~L~ 597 (683)
+++|+.+++++|+++.+.+.+|.+|++|+++++.+| +..+.+.+|.++++|+ .+++.+ .+.... ...+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~--~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE--FGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC--TTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc--hhhhhCCccCC
Confidence 455555555555555444455555555555555554 4444444555555555 555554 333221 13344455555
Q ss_pred EEeCCCCcCCCCCcHHHHhcchhhccc
Q 043978 598 IIDLSRNEFKDFLPRRNFTSMEAMKNV 624 (683)
Q Consensus 598 ~L~ls~n~~~~~~p~~~~~~~~~L~~l 624 (683)
.+++++|.++ .++..+|.++++|+.+
T Consensus 301 ~l~l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 301 YVLATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred EEEeCCCccC-ccchhhhcCCcchhhh
Confidence 5555555554 3444455555555444
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-15 Score=135.06 Aligned_cols=127 Identities=24% Similarity=0.338 Sum_probs=101.2
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 530 (683)
.++++++.+. .+|..+ .++|++|++++|.+. .+|..+..+. +|+.|++++|++++..+..|.++++|+.|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4555555555 344433 257888888888887 7777776665 8888999888888888888888999999999999
Q ss_pred cccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 531 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9988888888889999999999999987666678888999999999998753
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=142.80 Aligned_cols=327 Identities=15% Similarity=0.136 Sum_probs=163.9
Q ss_pred CCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCC
Q 043978 180 CNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLT 259 (683)
Q Consensus 180 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 259 (683)
+.++.+|+.+.+..+ +......+|.+|++|+.+++..+ +......+|..+..|+.+.+..+ +......+|.++..++
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 334444444444321 33233344555555555555432 33333445555555555544432 2223333444443222
Q ss_pred EEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC
Q 043978 260 NLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK 339 (683)
Q Consensus 260 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~ 339 (683)
..+... .......+|..+++|+.+.+..+...-....|..+.+|+.+.+..+ +. .+...+|.++.
T Consensus 144 -~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~------------~I~~~~F~~~~ 208 (394)
T 4fs7_A 144 -ITIPEG-VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LK------------IIRDYCFAECI 208 (394)
T ss_dssp -EECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CC------------EECTTTTTTCT
T ss_pred -cccCcc-ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ce------------EeCchhhcccc
Confidence 222111 1113334455566666666654432222333445566666655544 22 22333566666
Q ss_pred CCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccc
Q 043978 340 NLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH 419 (683)
Q Consensus 340 ~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 419 (683)
.|+.+.+..+... +. +.......|+.+.+... +. .+....+.++..++.+.+..+...
T Consensus 209 ~L~~i~~~~~~~~-i~-----~~~~~~~~l~~i~ip~~-~~--------------~i~~~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 209 LLENMEFPNSLYY-LG-----DFALSKTGVKNIIIPDS-FT--------------ELGKSVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp TCCBCCCCTTCCE-EC-----TTTTTTCCCCEEEECTT-CC--------------EECSSTTTTCSSCCEEEECCTTCE-
T ss_pred ccceeecCCCceE-ee-----hhhcccCCCceEEECCC-ce--------------ecccccccccccceeEEcCCCcce-
Confidence 6666665554311 10 11223344555544322 11 122223344555555555443211
Q ss_pred cCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCccc
Q 043978 420 IALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLI 499 (683)
Q Consensus 420 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~ 499 (683)
+....+..+..++.+......+. ...|..+.+|+.+.+..+ +. .++...+..+.+|+
T Consensus 267 ------------------i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 267 ------------------IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLV 323 (394)
T ss_dssp ------------------ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCC
T ss_pred ------------------eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCC
Confidence 12233334444444444433322 245666777777777654 43 44444444444778
Q ss_pred EEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEE
Q 043978 500 TLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKIL 573 (683)
Q Consensus 500 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 573 (683)
.+++..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+|++|+.+++..+ +. .....|.++++|+.+
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7777643 66666778888888888888776 66677788888888888888765 22 234567777777764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=137.12 Aligned_cols=134 Identities=22% Similarity=0.258 Sum_probs=95.5
Q ss_pred CCCCcEEEccCCccc-CCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 446 PPSTEVFLVSNNKLS-GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
++++++|++++|.+. +.+|..+..+++|++|++++|.+.+ + ..+..+. +|++|++++|++++..+..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 355566666666655 4556667777788888888888763 3 4444443 7888888888887766677777788888
Q ss_pred EEcCCCcccccCc-hhhhcCCCCcEEEccCCcCCccCC---ccccCCCCCCEEEccCCcCcc
Q 043978 525 FDLNCNKFEGSLP-RSLAKCVKLEVVNVGNNMINDTFP---CWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 525 L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~ 582 (683)
|++++|++++..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888888875422 677788888888888888876544 367788888888888887753
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=133.38 Aligned_cols=129 Identities=22% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCCCEEEcCCCcCC-CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLS-GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|+.|++++|.+. +.+|..+..+. +|+.|++++|++++. ..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 34444333333 555555555555544 455566666666666666665456656666666666
Q ss_pred EccCCcCCcc-CCccccCCCCCCEEEccCCcCcccCCC-CccccCCCCCcEEeCC
Q 043978 550 NVGNNMINDT-FPCWLGSLPLLKILILRSNRFYGPLCK-SITTFSFQALRIIDLS 602 (683)
Q Consensus 550 ~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~ls 602 (683)
++++|.+++. .+..+..+++|++|++++|++.+..+. ...+..+++|++||++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666543 235566666666666666666543220 0124456666666665
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-16 Score=174.19 Aligned_cols=115 Identities=22% Similarity=0.286 Sum_probs=63.0
Q ss_pred CCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccE
Q 043978 445 PPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524 (683)
Q Consensus 445 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 524 (683)
.++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+. +|++|+|++|+|+ .+|..|..+++|+.
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS-NLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT-TCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC-CCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 3455555555555555 34444445555556666655555 5555554443 5556666655555 33555555555666
Q ss_pred EEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 525 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
|+|++|.++ .+|..|..+++|++|+|++|.+++.+|..+
T Consensus 298 L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 298 FYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 666555554 344445555556666666665555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-17 Score=177.98 Aligned_cols=189 Identities=22% Similarity=0.226 Sum_probs=96.2
Q ss_pred cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCcc-------------CCcCChhhhhcCcCCccEEE-cCCC
Q 043978 81 SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTN-------------LSLIKPFSLLNLSSTMTDLD-LSGT 146 (683)
Q Consensus 81 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~~L~~L~-l~~n 146 (683)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+ ++|+.|+ ++.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~----~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n 420 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST----VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAA 420 (567)
T ss_dssp STTTTSSSCCCCHHHHH----HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHH
T ss_pred ccCccceeccCChhhHH----hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhc
Confidence 44566666666666554 456666666666666665543 223334444444 4555554 3333
Q ss_pred cCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCC
Q 043978 147 RIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPT 226 (683)
Q Consensus 147 ~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 226 (683)
.+. .|+.+.+++| .+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|.
T Consensus 421 ~~~-----------~L~~l~l~~n-~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~ 480 (567)
T 1dce_A 421 YLD-----------DLRSKFLLEN-SVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP 480 (567)
T ss_dssp HHH-----------HHHHHHHHHH-HHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred ccc-----------hhhhhhhhcc-cccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch
Confidence 211 1222222222 1111100 125555555555553 343 555566666666666555 4455
Q ss_pred CCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccC-CccccCCCCCcEEEccCCcccCcC
Q 043978 227 STGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKV-PSWLFTLPSLVSVNLAWNKLTGPI 296 (683)
Q Consensus 227 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~ 296 (683)
.++.+++|+.|++++|.+++ +| .++.+++|++|++++|.+++.. |..+..+++|+.|++++|.+++.+
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 55555566666666655554 33 4555566666666666555443 555555555555555555555433
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-13 Score=141.35 Aligned_cols=310 Identities=14% Similarity=0.047 Sum_probs=157.9
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCC
Q 043978 201 PYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLP 280 (683)
Q Consensus 201 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 280 (683)
..+|.+|.+|+.+.+.. .++.....+|.++++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 34566666666666653 244444555666666666666543 33344445555555555544433 2223333333332
Q ss_pred CCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEeCCCCCcccccccccc
Q 043978 281 SLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNI 360 (683)
Q Consensus 281 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~ 360 (683)
.+......... .+...+|.++++|+.+.+.++. ..+..
T Consensus 141 ~~~~~~~~~~~-------------------------------------~i~~~aF~~c~~L~~i~l~~~~-~~I~~---- 178 (394)
T 4fs7_A 141 FKEITIPEGVT-------------------------------------VIGDEAFATCESLEYVSLPDSM-ETLHN---- 178 (394)
T ss_dssp CSEEECCTTCC-------------------------------------EECTTTTTTCTTCCEEECCTTC-CEECT----
T ss_pred ccccccCcccc-------------------------------------ccchhhhcccCCCcEEecCCcc-ceecc----
Confidence 22211111111 1122244555555555554332 11211
Q ss_pred ccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccc-cCCCCCCCceEEeCCCC--C
Q 043978 361 DIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTH-IALHPWKNIRTLDLRNN--K 437 (683)
Q Consensus 361 ~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~L~~L~l~~n--~ 437 (683)
..+..+++|+.+.+..+ ++. +....|.++..|+.+.+..+...- .......+|+.+.+... .
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~--------------I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~ 243 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKI--------------IRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTE 243 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCE--------------ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCE
T ss_pred ccccCCCCceEEEcCCC-ceE--------------eCchhhccccccceeecCCCceEeehhhcccCCCceEEECCCcee
Confidence 22334455555544332 211 222333555556655555442211 11123345666655443 2
Q ss_pred CCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccccccc
Q 043978 438 IQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE 517 (683)
Q Consensus 438 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 517 (683)
+....+..+..++.+.+..+... .....|..+..++......+.+ +...+....+|+.+.+..+ ++.+...+|.
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred cccccccccccceeEEcCCCcce-eeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhc
Confidence 33344556666666666655333 4455677777777776665433 2222333347777777554 5555666777
Q ss_pred CCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCC
Q 043978 518 NASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSN 578 (683)
Q Consensus 518 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 578 (683)
++++|+.+++.++ ++.+...+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 7777777777644 55566667777777777777655 55555566777777777776544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-16 Score=173.71 Aligned_cols=186 Identities=24% Similarity=0.223 Sum_probs=110.9
Q ss_pred CcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCC
Q 043978 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 484 (683)
+.++.|++.+|.+..... ..++.++++.+.+. .+++..|.+. ..+..+..++.|+.|+|++|.+.
T Consensus 173 ~~~~~l~L~~n~~~~~~~---~~l~~l~Ls~~~i~-----------~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~ 237 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ---ALLQHKKLSQYSID-----------EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF 237 (727)
T ss_dssp ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred CccceEEeeCCCCCcchh---hHhhcCccCccccc-----------Ccccccccee-cChhhhccCCCCcEEECCCCCCC
Confidence 456777777776665322 33455666666554 2344445555 56778899999999999999998
Q ss_pred CCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 485 GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 485 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
.+|..++.+. +|++|+|++|.++ .+|..|..+++|+.|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|
T Consensus 238 -~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 238 -NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp -CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred -CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 8888888766 9999999999998 66788999999999999999998 67889999999999999999997 678789
Q ss_pred cCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 565 GSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 565 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+.+++|++|+|++|++++.+|....... ..+..+++++|.+++.+|
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKS-VTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHH-HHHHHHHHHHCCCCCCCC
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcc-hhhhHHhhccCcccCcCc
Confidence 9999999999999999876653221111 111234555555555554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-15 Score=131.83 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=112.7
Q ss_pred CcccEEECCCCccc-ccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEE
Q 043978 496 TQLITLHLKNNSLE-GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILI 574 (683)
Q Consensus 496 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 574 (683)
++|+.|++++|.++ +..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 58999999999998 67778889999999999999999866 7799999999999999999987888888899999999
Q ss_pred ccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc--HHHHhcchhhccccccc
Q 043978 575 LRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP--RRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 575 l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p--~~~~~~~~~L~~l~l~~ 628 (683)
+++|++.+.. ....+..+++|++|++++|++++..+ ...|..+++|+.+++++
T Consensus 95 ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999997632 11356789999999999999986433 26899999999999863
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-13 Score=137.38 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=135.8
Q ss_pred CCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCcc
Q 043978 60 KELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMT 139 (683)
Q Consensus 60 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~ 139 (683)
..++.+.+.. .++.+...+|.++ +|+.+.+..+-..+....| .++ +|+.+.+.. .+..+...+|..+ ++|+
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF----~~~-~L~~i~lp~-~l~~I~~~aF~~c-~~L~ 183 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEGLKSIGDMAF----FNS-TVQEIVFPS-TLEQLKEDIFYYC-YNLK 183 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTTCCEECTTTT----TTC-CCCEEECCT-TCCEECSSTTTTC-TTCC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCCccEECHHhc----CCC-CceEEEeCC-CccEehHHHhhCc-ccCC
Confidence 3444444432 2333444444443 3555554444222222222 222 355555543 3444444455555 5555
Q ss_pred EEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCc
Q 043978 140 DLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCN 219 (683)
Q Consensus 140 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 219 (683)
.+++++|++.......+. +.+|+.+.+..+ ...-....+..+++|+.+++..+ +......+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 555555555433223333 355555555432 11111114555555555555543 23233334444 456666663 23
Q ss_pred ccccCCCCCCCCCCCCeeeccCcccc-----ccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccC
Q 043978 220 FMGSIPTSTGNLSKATEILFASNHLT-----GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTG 294 (683)
Q Consensus 220 ~~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 294 (683)
+......+|..+++|+.+.+.++.+. .....+|.++++|+.+++.+ .+......+|..+.+|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44444556666666666666655443 34556677777777777763 355555666777777777777554 333
Q ss_pred -cCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCC-CCCEEeCCCCCcccc
Q 043978 295 -PIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLK-NLQFLDLSNNNLLSF 354 (683)
Q Consensus 295 -~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l 354 (683)
....|.++ +|+.+++.+|.+. .+....|..++ .++.|.+..+.+...
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~------------~l~~~~F~~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPP------------QVFEKVWYGFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCC------------BCCCSSCCCSCTTCCEEEECGGGHHHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCc------------ccccccccCCCCCccEEEeCHHHHHHh
Confidence 23345566 7777777777655 22333566663 678888887765544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-14 Score=128.61 Aligned_cols=110 Identities=22% Similarity=0.302 Sum_probs=59.4
Q ss_pred CCCCEEEcCCCcCCCCCChh-hhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEE
Q 043978 471 SSLKYLSLSHNNLSGTIPPC-LGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVV 549 (683)
Q Consensus 471 ~~L~~L~Ls~n~i~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 549 (683)
++|++|++++|.+. .++.. +..+ ++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQ-SLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCccc-EeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 34555555555554 22222 2222 255555555555555444555555666666666666655544555566666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 550 NVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 550 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
++++|.+++..+..+..+++|++|++++|++.+
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666666655444445556666666666666543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=130.84 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=102.2
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
..+..+++|+.|++++|.+. .+|. +....++|+.|++++|.+++. ..|..+++|+.|++++|++++..+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 34567788999999999887 5553 555555899999999988875 6788888899999999998876666668888
Q ss_pred CCcEEEccCCcCCccCCc--cccCCCCCCEEEccCCcCcccCCCC--ccccCCCCCcEEeCCCCcCC
Q 043978 545 KLEVVNVGNNMINDTFPC--WLGSLPLLKILILRSNRFYGPLCKS--ITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~~~ 607 (683)
+|++|++++|.+.+ +|. .+..+++|+.|++++|++... +.. ..+..+++|+.||+++|.+.
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 89999999998864 444 677888888888888887643 210 02456677777777777664
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-12 Score=134.31 Aligned_cols=267 Identities=14% Similarity=0.159 Sum_probs=189.9
Q ss_pred cCCCCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCC
Q 043978 81 SHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLP 160 (683)
Q Consensus 81 ~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~ 160 (683)
..+..++.+.+..+--.+....| .++ +|+.+.+..+ +..+...+|.+. +|+.+.+.. .+......+|..++
T Consensus 110 ~~~~~l~~i~ip~~i~~I~~~aF----~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~ 180 (401)
T 4fdw_A 110 EILKGYNEIILPNSVKSIPKDAF----RNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCY 180 (401)
T ss_dssp EECSSCSEEECCTTCCEECTTTT----TTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCT
T ss_pred EecCCccEEEECCccCEehHhhc----ccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcc
Confidence 34577888888776444444443 454 6888888765 777777788774 588888876 56656667888888
Q ss_pred CCcEEEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeecc
Q 043978 161 NLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFA 240 (683)
Q Consensus 161 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 240 (683)
+|+.+++..| .+.........+.+|+.+.+..+ +......+|.++++|+.+++..+ +......+|.. .+|+.+.+.
T Consensus 181 ~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 181 NLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp TCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE
T ss_pred cCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC
Confidence 9999998877 55554443333678888888754 55556678888889999988764 55555667777 788888884
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCc-----ccCCccccCCCCCcEEEccCCcccC-cCCCCCCCCCCcEEECCCCc
Q 043978 241 SNHLTGQLPHHVSGLLYLTNLDLFGNSLQ-----GKVPSWLFTLPSLVSVNLAWNKLTG-PIDGFQSPNSLEEVHLEKNQ 314 (683)
Q Consensus 241 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~~~~~~L~~L~L~~n~ 314 (683)
+.+......+|.++++|+.+++.++.+. ...+.+|..+++|+.+++..+ +.. ....|.++.+|+.+.+..+
T Consensus 257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 257 -NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp -TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-
T ss_pred -CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-
Confidence 4566667778888889999988887664 456677888889999988843 554 3345668888999888655
Q ss_pred CcccCCccchhccCcccccccCCCCCCCEEeCCCCCccccccccccccccCCC-CccEEEcccCCCC
Q 043978 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLP-SLLKLSFSNCNVS 380 (683)
Q Consensus 315 i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~-~L~~L~l~~~~l~ 380 (683)
++ .+...+|.++ +|+.+++.+|.+..+.. ..+..++ .++.|.+..+.+.
T Consensus 334 l~------------~I~~~aF~~~-~L~~l~l~~n~~~~l~~----~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 334 VT------------QINFSAFNNT-GIKEVKVEGTTPPQVFE----KVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CC------------EECTTSSSSS-CCCEEEECCSSCCBCCC----SSCCCSCTTCCEEEECGGGHH
T ss_pred cc------------EEcHHhCCCC-CCCEEEEcCCCCccccc----ccccCCCCCccEEEeCHHHHH
Confidence 44 4455578888 89999998888666543 2344553 6788888776543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.8e-14 Score=127.00 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=90.3
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
++++++|++++|.+.. ++......++|++|++++|.+.+ + ..+..+. +|++|++++|++++..+..|..+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCC-CCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4445555555555553 33333333478888888888873 3 3444444 78888888888887666666788888888
Q ss_pred EcCCCcccccCch--hhhcCCCCcEEEccCCcCCccCCc----cccCCCCCCEEEccCCcCc
Q 043978 526 DLNCNKFEGSLPR--SLAKCVKLEVVNVGNNMINDTFPC----WLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 526 ~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~ 581 (683)
++++|+++. .|. .+..+++|++|++++|++.. .|. .+..+++|+.|++++|...
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888863 444 67888888888888888874 444 3778888888888888764
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-13 Score=120.83 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=47.6
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++++|.+. .+|..+. ++|+.|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 45555555554 3443332 2455555555555544444444444555555555544444444444444444444444
Q ss_pred CcCCccCCccccCCCCCCEEEccCCcC
Q 043978 554 NMINDTFPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 554 n~l~~~~~~~l~~l~~L~~L~l~~n~l 580 (683)
|.+++..+..|..+++|++|++++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 444433333344444444444444433
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-11 Score=125.38 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=65.1
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
.+|.++..|+.+.+.++.. .+....+..+++|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 3455555555555544322 2222222223356666654 3344455566666666666666543 4445556666666
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcC
Q 043978 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEF 606 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~ 606 (683)
+|+.+.+..+ ++.+...+|.++++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence 6666666543 444445566666666666666665321 1234455666666655544
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=118.18 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=96.4
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
+.+.+++++|+++.+.. .+ .++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 56899999999987543 33 3789999999999998889999999999999999999998888888999999999999
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++.+..+ ..+..+++|++|++++|++.+..+
T Consensus 87 ~N~l~~~~~--~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPR--GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCT--TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCH--HHhcCCCCCCEEEeCCCCCCCCch
Confidence 999987654 346788999999999999997665
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-13 Score=119.39 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=45.9
Q ss_pred CEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccC
Q 043978 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGN 553 (683)
Q Consensus 474 ~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 553 (683)
+.+++++|.+. .+|..+. ++|+.|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44555555554 4444332 2455555555555444444444444444444444444433333344444444444444
Q ss_pred CcCCccCCccccCCCCCCEEEccCCc
Q 043978 554 NMINDTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 554 n~l~~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
|.+....+..|..+++|++|++++|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 44443333233333444443333333
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-15 Score=139.69 Aligned_cols=112 Identities=28% Similarity=0.353 Sum_probs=62.4
Q ss_pred cccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCC
Q 043978 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVK 545 (683)
Q Consensus 466 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 545 (683)
.+..+++|++|++++|.+. .+| .+..+. +|+.|++++|+++. .|..+..+++|+.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~-~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CHHHHT-TCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-ccccCC-CCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 5556666666666666665 344 444443 66666666666653 33444445566666666666653 23 4555566
Q ss_pred CcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCccc
Q 043978 546 LEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 546 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
|++|++++|.+.+..+ ..+..+++|++|++++|++.+.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666666666654222 2455566666666666665443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=115.52 Aligned_cols=110 Identities=17% Similarity=0.086 Sum_probs=93.9
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
.-+.+++++|+++.++ ..+. ++|+.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 13 ~~~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3478999999997554 4343 789999999999998889999999999999999999998777778999999999999
Q ss_pred CCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCc
Q 043978 577 SNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLP 611 (683)
Q Consensus 577 ~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 611 (683)
+|++.+..+ ..+..+++|++|++++|++.+..+
T Consensus 90 ~N~l~~l~~--~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPR--GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCT--TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCH--HHhccccCCCEEEeCCCCcccccc
Confidence 999986543 346789999999999999986543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-15 Score=139.75 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=125.0
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCh------hhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhh
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPP------CLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSL 540 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 540 (683)
+.....++.++++.+.+.+.+|. .+..+. +|++|++++|++++. + .+..+++|+.|++++|.++ .+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchh
Confidence 44455666667777776665554 777766 999999999999874 4 8889999999999999998 567788
Q ss_pred hcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcH--------
Q 043978 541 AKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR-------- 612 (683)
Q Consensus 541 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~-------- 612 (683)
..+++|++|++++|.+++ +| .+..+++|++|++++|++....+ ...+..+++|++|++++|++.+.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 888999999999999986 44 58889999999999999975321 12456889999999999999866542
Q ss_pred -HHHhcchhhcccccccceee
Q 043978 613 -RNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 613 -~~~~~~~~L~~l~l~~n~~~ 632 (683)
..+..++.|+.++ +++++
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHhCCCcEEEC--CcccC
Confidence 3578888998887 55554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=119.09 Aligned_cols=108 Identities=14% Similarity=0.021 Sum_probs=52.0
Q ss_pred ccccCCC-CCCEEEccCCcccccCCCCCCCCCCCCeeeccCcc---ccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 043978 202 YSIGNLL-FLETVDITYCNFMGSIPTSTGNLSKATEILFASNH---LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLF 277 (683)
Q Consensus 202 ~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 277 (683)
.+|.++. .|+.+.+... ++.....+|.++++|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++.....+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3455553 4666666542 444445556666666666665442 33344445555555555555443 2223344445
Q ss_pred CCCCCcEEEccCCcccCcCCCCCCCCCCcEEECC
Q 043978 278 TLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLE 311 (683)
Q Consensus 278 ~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~ 311 (683)
.+.+|+.+.+..+...-....+..+..|+.+.+.
T Consensus 135 ~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred hhcccccccccceeeeecccceeccccccccccc
Confidence 5555555555433222122233344444444443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-13 Score=141.27 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=82.1
Q ss_pred CCCceEEeCCCCCCCccCC--------CCCCCCcEEEccCCcccCCCCcc-ccCCCCCCEEEcCCCcCCCCCChhhhh--
Q 043978 425 WKNIRTLDLRNNKIQGSIL--------VPPPSTEVFLVSNNKLSGQIPPY-ICSLSSLKYLSLSHNNLSGTIPPCLGN-- 493 (683)
Q Consensus 425 ~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~-- 493 (683)
.+.++.|++++|.++.... ..+++|++|++++|.++...... ...+++|+.|+|++|.+++.....+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567888888888764211 12356666666666665322211 122445666666666664322222211
Q ss_pred --ccCcccEEECCCCccccc----ccccccCCCCccEEEcCCCcccccC----chhhhcCCCCcEEEccCCcCCccC---
Q 043978 494 --FTTQLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGSL----PRSLAKCVKLEVVNVGNNMINDTF--- 560 (683)
Q Consensus 494 --~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~--- 560 (683)
..++|++|+|++|.++.. ++..+..+++|++|+|++|.+++.. +..+..+++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 123566666666666542 2233345566666666666655322 344455556666666666665432
Q ss_pred -CccccCCCCCCEEEccCCcCc
Q 043978 561 -PCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 561 -~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+..+...++|++|+|++|++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 222334456666666666654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-13 Score=137.33 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=94.4
Q ss_pred CcCcEEECCCCcccccCC--------CCCCCceEEeCCCCCCCccC----CCCCCCCcEEEccCCcccCCCCccc-----
Q 043978 405 KSLIDLDLSNNFLTHIAL--------HPWKNIRTLDLRNNKIQGSI----LVPPPSTEVFLVSNNKLSGQIPPYI----- 467 (683)
Q Consensus 405 ~~L~~L~l~~n~~~~~~~--------~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l----- 467 (683)
+.|+.|++++|.++.... ...++|+.|++++|.++... ...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567777777777665321 12356777777777775321 1134567777777777764333332
Q ss_pred cCCCCCCEEEcCCCcCCCC----CChhhhhccCcccEEECCCCcccccc----cccccCCCCccEEEcCCCccccc----
Q 043978 468 CSLSSLKYLSLSHNNLSGT----IPPCLGNFTTQLITLHLKNNSLEGHI----HDTFENASNIQSFDLNCNKFEGS---- 535 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~---- 535 (683)
...++|++|+|++|.+++. ++..+.... +|++|+|++|.+++.. +..+...++|+.|+|++|.+++.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356677777777776521 222233333 6777777777776532 44555666777777777777643
Q ss_pred CchhhhcCCCCcEEEccCCcCCccCCccc
Q 043978 536 LPRSLAKCVKLEVVNVGNNMINDTFPCWL 564 (683)
Q Consensus 536 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 564 (683)
++..+..+++|++|++++|.|++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 23344556777777777777765544333
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=121.54 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred EEEcCCC-cCCCCCChhhhhccCcccEEECCC-CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEcc
Q 043978 475 YLSLSHN-NLSGTIPPCLGNFTTQLITLHLKN-NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVG 552 (683)
Q Consensus 475 ~L~Ls~n-~i~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 552 (683)
.++++++ .++ .+|. +.... +|+.|+|++ |++++..+..|.++++|+.|+|++|++++..|..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566766 666 5666 54443 677777775 77776666677777777777777777776666677777777777777
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 553 NNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 553 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+|.++...+..|..++ |+.|++++|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777655555555544 677777776664
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-08 Score=105.77 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=38.0
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
.+|.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++.+...+|.++.+|+.+++..+ ++.+...+|.+|+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 44445555555555332 22 233322222334555555444444444445555555555555432 3333444455555
Q ss_pred CCcEEEcc
Q 043978 545 KLEVVNVG 552 (683)
Q Consensus 545 ~L~~L~l~ 552 (683)
+|+.+.+.
T Consensus 334 ~L~~i~ip 341 (379)
T 4h09_A 334 ALSTISYP 341 (379)
T ss_dssp TCCCCCCC
T ss_pred CCCEEEEC
Confidence 55554443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=118.01 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=72.7
Q ss_pred EEEccCC-cccCCCCccccCCCCCCEEEcCC-CcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcC
Q 043978 451 VFLVSNN-KLSGQIPPYICSLSSLKYLSLSH-NNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLN 528 (683)
Q Consensus 451 ~L~l~~n-~i~~~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 528 (683)
.++.+++ .+.. +|. +..+++|+.|+|++ |.+.+..+..+..+. +|+.|+|++|+|++..+..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4567776 6663 556 77777788888875 777733334444443 78888888888877777777778888888888
Q ss_pred CCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 529 CNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 529 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
+|++++..+..|..++ |+.|++++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888766555565555 8888888887763
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-08 Score=103.58 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=45.5
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCC
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 544 (683)
.++.++..|+.+.+..+ ++ .+....+....+|+.+.+..+ +..+...+|.++++|+.+.+.++.++.+...+|.+|+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 34445555555555433 22 232222222234444444322 3333344444455555555544444444444444555
Q ss_pred CCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 545 KLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 545 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
+|+.+.+..+ ++.+...+|.++++|+.+.+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5555444332 33233334444444444433
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.1e-09 Score=105.83 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=46.7
Q ss_pred CCCCCCEEEccCCcccccCCCCC---CCCCCCCeeeccCccccccC----CccccCCCCCCEEEccCCcCcccCCccccC
Q 043978 206 NLLFLETVDITYCNFMGSIPTST---GNLSKATEILFASNHLTGQL----PHHVSGLLYLTNLDLFGNSLQGKVPSWLFT 278 (683)
Q Consensus 206 ~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 278 (683)
.+++|++|++.+|.+....+..+ ..+++|++|+++.|.+.+.. +..+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35566666666665543211111 23567777777777666532 223345677888888887776544443433
Q ss_pred -CCCCcEEEccCCc
Q 043978 279 -LPSLVSVNLAWNK 291 (683)
Q Consensus 279 -l~~L~~L~L~~n~ 291 (683)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3556777665
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-08 Score=91.78 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=44.8
Q ss_pred cCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCcc----CCccccCCCCCCEEEc--cCCcCcccCCC
Q 043978 517 ENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDT----FPCWLGSLPLLKILIL--RSNRFYGPLCK 586 (683)
Q Consensus 517 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l--~~n~l~~~~~~ 586 (683)
...++|++|+|++|.+.+. +...+...++|++|+|++|.|.+. +...+...++|++|++ ++|.+...-..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555554421 123344445566666666665543 2334445556666666 55655421100
Q ss_pred --CccccCCCCCcEEeCCCCcCC
Q 043978 587 --SITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 587 --~~~~~~l~~L~~L~ls~n~~~ 607 (683)
...+...++|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 012233466777777777664
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-08 Score=101.76 Aligned_cols=158 Identities=12% Similarity=0.167 Sum_probs=87.6
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCccccccccccc--CCCCccEEEcCC--Ccccc-----c
Q 043978 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFE--NASNIQSFDLNC--NKFEG-----S 535 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~-----~ 535 (683)
..+..+|+|+.|++++|.-. .++. + . .++|+.|++..|.+.......+. .+++|+.|+|+. |...+ .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 44566777777777766311 2333 2 2 23777777777776544333332 567777777742 21110 0
Q ss_pred Cchhh--hcCCCCcEEEccCCcCCccCCcccc---CCCCCCEEEccCCcCcccCCCC--ccccCCCCCcEEeCCCCcCCC
Q 043978 536 LPRSL--AKCVKLEVVNVGNNMINDTFPCWLG---SLPLLKILILRSNRFYGPLCKS--ITTFSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 536 ~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~--~~~~~l~~L~~L~ls~n~~~~ 608 (683)
+...+ ..+++|++|++++|.+.+..+..+. .+++|++|+|+.|.+...-+.. ..+..+++|+.|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11122 2467888888888877654333232 4678888888888775421100 112356788888888887652
Q ss_pred CCcHHHHhcchh-h-cccccccce
Q 043978 609 FLPRRNFTSMEA-M-KNVDEQATR 630 (683)
Q Consensus 609 ~~p~~~~~~~~~-L-~~l~l~~n~ 630 (683)
.....+.. + ..+++++++
T Consensus 322 ----~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 322 ----EMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp ----HHHHHHHHHCCSEEECCSBC
T ss_pred ----HHHHHHHHHcCCEEEecCCc
Confidence 22333332 2 345555554
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-08 Score=89.57 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=82.8
Q ss_pred ccccCCCCCCEEEcCCC-cCCCC----CChhhhhccCcccEEECCCCccccc----ccccccCCCCccEEEcCCCccccc
Q 043978 465 PYICSLSSLKYLSLSHN-NLSGT----IPPCLGNFTTQLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGS 535 (683)
Q Consensus 465 ~~l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 535 (683)
..+...++|++|+|++| .+.+. +...+... ++|++|+|++|.+... +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 45667888999999988 77632 22233333 3789999999988754 234455667899999999988753
Q ss_pred ----CchhhhcCCCCcEEEc--cCCcCCccC----CccccCCCCCCEEEccCCcCc
Q 043978 536 ----LPRSLAKCVKLEVVNV--GNNMINDTF----PCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 536 ----~~~~l~~l~~L~~L~l--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+...+...++|++|++ ++|.+.+.. ...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3456777788999999 788887652 334556688999999988864
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-07 Score=90.93 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=47.9
Q ss_pred hcCCCCcEEEccCCcCCcc--CCccccCCCCCCEEEccCCcCcccCCCCccccCCC--CCcEEeCCCCcCCCCCcH----
Q 043978 541 AKCVKLEVVNVGNNMINDT--FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ--ALRIIDLSRNEFKDFLPR---- 612 (683)
Q Consensus 541 ~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~--~L~~L~ls~n~~~~~~p~---- 612 (683)
.++++|++|+|++|.+++. +|..++.+++|+.|+|++|++.+.. .+..+. .|++|++++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~----~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER----ELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG----GGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch----hhhhcccCCcceEEccCCcCccccCcchhH
Confidence 4456666666666666652 3344456666666666666665431 112222 677777777777655541
Q ss_pred --HHHhcchhhccccc
Q 043978 613 --RNFTSMEAMKNVDE 626 (683)
Q Consensus 613 --~~~~~~~~L~~l~l 626 (683)
..+..+++|+.||-
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 34666777777663
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-07 Score=81.93 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=55.7
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCc-ccccCchhhhcC----CCCcEEEccCCc-CCccCCccccCCCCC
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNK-FEGSLPRSLAKC----VKLEVVNVGNNM-INDTFPCWLGSLPLL 570 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~l~~L 570 (683)
.|+.||+++|.++......+.++++|+.|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 67777777777776655666777777777777775 654444445543 367777777773 766544456667777
Q ss_pred CEEEccCCc
Q 043978 571 KILILRSNR 579 (683)
Q Consensus 571 ~~L~l~~n~ 579 (683)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777775
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-07 Score=89.05 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=67.2
Q ss_pred EECCCCccccc---ccccccCCCCccEEEcCCCcccc--cCchhhhcCCCCcEEEccCCcCCccCCccccCCC--CCCEE
Q 043978 501 LHLKNNSLEGH---IHDTFENASNIQSFDLNCNKFEG--SLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLP--LLKIL 573 (683)
Q Consensus 501 L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L 573 (683)
++++.|+.... ......++++|+.|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 55666643321 22233567889999999999886 3446677889999999999988865 2344444 89999
Q ss_pred EccCCcCcccCCCC-----ccccCCCCCcEEeC
Q 043978 574 ILRSNRFYGPLCKS-----ITTFSFQALRIIDL 601 (683)
Q Consensus 574 ~l~~n~l~~~~~~~-----~~~~~l~~L~~L~l 601 (683)
++++|++.+..+.. .....+|+|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 99999987644321 12456788888763
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.1e-06 Score=75.77 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=15.1
Q ss_pred CCCEEEccCCc-CcccCCccccCCCCCcEEEccCC
Q 043978 257 YLTNLDLFGNS-LQGKVPSWLFTLPSLVSVNLAWN 290 (683)
Q Consensus 257 ~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n 290 (683)
+|++|++++|. +++..-..+..+++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34555555442 44333333444444444444444
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.3e-05 Score=69.53 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=56.8
Q ss_pred cccEEECCCC-ccccc----ccccccCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCcc----CCcc
Q 043978 497 QLITLHLKNN-SLEGH----IHDTFENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDT----FPCW 563 (683)
Q Consensus 497 ~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~ 563 (683)
.|++|+|++| +|... +.+++..-+.|+.|+|++|++.+. +...+...++|++|+|++|.|.+. +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4445555443 44321 223444445666666666665532 234455566677777777777654 2233
Q ss_pred ccCCCCCCEEEccCCcC---cccC--CCCccccCCCCCcEEeCCCCcC
Q 043978 564 LGSLPLLKILILRSNRF---YGPL--CKSITTFSFQALRIIDLSRNEF 606 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l---~~~~--~~~~~~~~l~~L~~L~ls~n~~ 606 (683)
+...+.|+.|+|++|.. .... .....+...+.|+.|+++.|.+
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 44556677777765432 1100 0011233456777788776654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=2.8e-05 Score=69.99 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=78.4
Q ss_pred cccCCCCCCEEEcCCC-cCCCC----CChhhhhccCcccEEECCCCcccccc----cccccCCCCccEEEcCCCccccc-
Q 043978 466 YICSLSSLKYLSLSHN-NLSGT----IPPCLGNFTTQLITLHLKNNSLEGHI----HDTFENASNIQSFDLNCNKFEGS- 535 (683)
Q Consensus 466 ~l~~l~~L~~L~Ls~n-~i~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~- 535 (683)
.+..-+.|++|+|++| .|.+. +-..+... ..|+.|+|++|+|.+.. .+++..-+.|+.|+|++|.+.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 4456678999999885 66521 22334433 38999999999987653 34455668899999999998743
Q ss_pred ---CchhhhcCCCCcEEEccCC---cCCcc----CCccccCCCCCCEEEccCCcC
Q 043978 536 ---LPRSLAKCVKLEVVNVGNN---MINDT----FPCWLGSLPLLKILILRSNRF 580 (683)
Q Consensus 536 ---~~~~l~~l~~L~~L~l~~n---~l~~~----~~~~l~~l~~L~~L~l~~n~l 580 (683)
+.+++..-+.|++|+|++| .+.+. +...+...+.|+.|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2345666778999999865 34432 334566778899999987764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0034 Score=52.61 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=15.0
Q ss_pred ccEEEcCCCcccccCchhhhcCCCCcEEEccCCcC
Q 043978 522 IQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMI 556 (683)
Q Consensus 522 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 556 (683)
|+.|+|++|+++...+..|..+++|++|+|++|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444433333444444444444444433
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0073 Score=50.51 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=33.2
Q ss_pred EEeCCCCCCC--ccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCC
Q 043978 430 TLDLRNNKIQ--GSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLS 484 (683)
Q Consensus 430 ~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~ 484 (683)
.++.+++.++ ......++++++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 333234455666666666666555666777777777777777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 683 | ||||
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 9e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 8e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.004 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 6e-04 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.002 |
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.7 bits (169), Expect = 2e-13
Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 21/286 (7%)
Query: 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCR 94
L+L N + +F LK L L + + P + L KL L LS
Sbjct: 31 PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 95 VLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMT-DLDLSGTRIQGNFP 153
L +L L L + ++ ++ L+ + +L + + G
Sbjct: 90 QLK------ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143
Query: 154 DQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETV 213
+ L + + T +P+ S L EL L + + S+ L L +
Sbjct: 144 GAFQGMKKLSYIRIADTNITT--IPQGLPPS-LTELHLDGNKITKVDAASLKGLNNLAKL 200
Query: 214 DITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQG--- 270
+++ + S N E+ +N L P ++ Y+ + L N++
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGS 259
Query: 271 ---KVPSWLFTLPSLVSVNLAWNKLTG---PIDGFQSPNSLEEVHL 310
P + S V+L N + F+ V L
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 4e-11
Identities = 58/339 (17%), Positives = 96/339 (28%), Gaps = 53/339 (15%)
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
C ++ L +PK + LDL + + NL L T+ + P +
Sbjct: 17 CSDLGLE-KVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNL 287
L K + + N L L L + ++ V + L + +
Sbjct: 75 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134
Query: 288 AWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLS 347
FQ L + + I TIP L +L L L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--------------PSLTELHLD 179
Query: 348 NNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSL 407
N + + + L +L KL S ++S + + L
Sbjct: 180 GNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--------------TPHL 221
Query: 408 IDLDLSNNFLTHIALHPWK--NIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPP 465
+L L+NN L + I+ + L NN I + P
Sbjct: 222 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS---------------AIGSNDFCPPG 266
Query: 466 YICSLSSLKYLSLSHNNLS-GTIPPCLGNFTTQLITLHL 503
Y +S +SL N + I P + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.3 bits (142), Expect = 4e-10
Identities = 52/312 (16%), Positives = 93/312 (29%), Gaps = 58/312 (18%)
Query: 302 PNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNID 361
P + L+ N+I F LKNL L L NN + +
Sbjct: 30 PPDTALLDLQNNKITEIKDGD------------FKNLKNLHTLILINNKISKISP----G 73
Query: 362 IKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA 421
L L +L S + E P + + + L + +
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPKT--------------LQELRVHENEITKVRKSV 119
Query: 422 LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHN 481
+ + ++L N K SG + L Y+ ++
Sbjct: 120 FNGLNQMIVVELGTN-------------------PLKSSGIENGAFQGMKKLSYIRIADT 160
Query: 482 NLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLA 541
N++ TIP L LHL N + + + +N+ L+ N SLA
Sbjct: 161 NIT-TIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 216
Query: 542 KCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF----YGPLCKSITTFSFQALR 597
L +++ NN + P L ++++ L +N C +
Sbjct: 217 NTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275
Query: 598 IIDLSRNEFKDF 609
+ L N + +
Sbjct: 276 GVSLFSNPVQYW 287
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.3 bits (129), Expect = 1e-08
Identities = 45/299 (15%), Positives = 81/299 (27%), Gaps = 42/299 (14%)
Query: 133 NLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLS 192
+L LDL +I L N L L L
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKN------------------------LHTLILI 63
Query: 193 LSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHV 252
+ S P + L+ LE + + N + +P + + + +
Sbjct: 64 NNKISKISPGAFAPLVKLERLYL-SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122
Query: 253 SGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312
+ + L G + L + +A +T G P SL E+HL+
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG 180
Query: 313 NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN-LLSFTSSGNIDIKY------S 365
N+I +SL L + + N L N +
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHP 424
+ + N N+S S + + S + L +N + + + P
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTK--------KASYSGVSLFSNPVQYWEIQP 291
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 49/276 (17%), Positives = 87/276 (31%), Gaps = 32/276 (11%)
Query: 14 LHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFG 73
L + + L L+ L L N L L+EL +
Sbjct: 60 LILINNKISKISPG--AFAPLVKLERLYL-SKNQLKELPEKMPKTLQELRVHENEITKVR 116
Query: 74 GLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLN 133
V + ++ + + + IE F + KLS + + TN++ I +
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAF----QGMKKLSYIRIADTNITTIPQGLPPS 172
Query: 134 LSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSL 193
L T+L L G +I + L NL L L N + LREL L+
Sbjct: 173 L----TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 194 SDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVS 253
+ ++P + + +++ V + N P + +
Sbjct: 229 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF------------------CPPGYNT 269
Query: 254 GLLYLTNLDLFGNSLQGK--VPSWLFTLPSLVSVNL 287
+ + LF N +Q PS + +V L
Sbjct: 270 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.8 bits (94), Expect = 4e-04
Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 5/142 (3%)
Query: 461 GQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENAS 520
G + P+ C L+ + S L +P + L L+NN + F+N
Sbjct: 1 GPVCPFRCQ-CHLRVVQCSDLGLE-KVPK---DLPPDTALLDLQNNKITEIKDGDFKNLK 55
Query: 521 NIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
N+ + L NK P + A VKLE + + N + + +L L++ +
Sbjct: 56 NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV 115
Query: 581 YGPLCKSITTFSFQALRIIDLS 602
+ + L L
Sbjct: 116 RKSVFNGLNQMIVVELGTNPLK 137
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.0 bits (157), Expect = 9e-12
Identities = 64/397 (16%), Positives = 118/397 (29%), Gaps = 53/397 (13%)
Query: 59 LKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHL 118
L E +N V + L ++T L + + D + L L+ ++
Sbjct: 21 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK----SIDGV-EYLNNLTQINF 73
Query: 119 GSTNLSLIKPFS-LLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYL 177
+ L+ I P L L + + + + L +
Sbjct: 74 SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 178 PKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGS---------IPTST 228
S D+S + + + + +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 229 GNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLA 288
L+ ++ +N ++ P + L L L GN L+ L +L +L ++LA
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 289 WNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIR--------FDQFSKLKN 340
N+++ L E+ L NQI P + + S LKN
Sbjct: 250 NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN 308
Query: 341 LQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHD 400
L +L L NN+ + + L L +L F+N VS+ S
Sbjct: 309 LTYLTLYFNNISDISPVSS------LTKLQRLFFANNKVSDVSSL--------------- 347
Query: 401 SKGWKSLIDLDLSNNFLTH-IALHPWKNIRTLDLRNN 436
++ L +N ++ L I L L +
Sbjct: 348 -ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 63.5 bits (153), Expect = 3e-11
Identities = 61/350 (17%), Positives = 115/350 (32%), Gaps = 25/350 (7%)
Query: 279 LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIP-SSLFQLCGTIRFDQFSK 337
L + ++ + IDG + N+L +++ NQ+ P +L +L + +
Sbjct: 43 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101
Query: 338 LKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRIS 397
+ L F + + L + N S L +
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161
Query: 398 KHDSKGWKSLIDL-------DLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI-LVPPPST 449
+ K L +L SN L N+ +L NN+I L +
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221
Query: 450 EVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLE 509
+ ++ N+L + SL++L L L++N +S P T+L L L N +
Sbjct: 222 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS 276
Query: 510 GHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPL 569
A + N + ++ L + + N I+D P + SL
Sbjct: 277 NISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330
Query: 570 LKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSME 619
L+ L +N+ + + + + N+ D P N T +
Sbjct: 331 LQRLFFANNKVSDVSSLA----NLTNINWLSAGHNQISDLTPLANLTRIT 376
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 62.3 bits (150), Expect = 7e-11
Identities = 59/358 (16%), Positives = 111/358 (31%), Gaps = 63/358 (17%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISH-- 82
I + L++L +N + N L +L + + + + P
Sbjct: 56 IKSIDGVEYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNL 112
Query: 83 -------------------------------LSKLTHLGLSCRVLTIEQRTFDLLASNLT 111
+S ++ L + + L
Sbjct: 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLA 172
Query: 112 KLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNI 171
L+ L + + + S+L + + L + +I P I NL L L GN
Sbjct: 173 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGN- 229
Query: 172 HLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNL 231
L + ++ L +LDL+ + S P + L L + + P + L
Sbjct: 230 QLKDIGTLASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GL 284
Query: 232 SKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNK 291
+ T + N L P L LT L L+ N++ P + +L L + A NK
Sbjct: 285 TALTNLELNENQLEDISPISN--LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340
Query: 292 LTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNN 349
++ + ++ + NQI P + L + L L++
Sbjct: 341 VSDV-SSLANLTNINWLSAGHNQISDLTP--------------LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.0 bits (118), Expect = 5e-07
Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 29/198 (14%)
Query: 12 LDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSN 71
L S I D + L L++L L+L N L LT L+ + +
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQ 252
Query: 72 FGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLA-----------------SNLTKLS 114
L P +S L+KLT L L ++ L A SNL L+
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310
Query: 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLT 174
L L N+S I P S L + + L + ++ + L N+ L N ++
Sbjct: 311 YLTLYFNNISDISPVSSL---TKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN-QIS 364
Query: 175 GYLPKCNWSSPLRELDLS 192
P N + + +L L+
Sbjct: 365 DLTPLANLTR-ITQLGLN 381
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 63.6 bits (153), Expect = 1e-11
Identities = 43/261 (16%), Positives = 80/261 (30%), Gaps = 9/261 (3%)
Query: 253 SGLLYLTNLDLFGNSLQGK--VPSWLFTLPSLVSVNLA--WNKLTGPIDGFQSPNSLEEV 308
+ + NLDL G +L +PS L LP L + + N + L +
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 309 HLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPS 368
++ + G IP L Q+ + D + ++ D +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL--PNLVGITFDGNRISGA 164
Query: 369 LLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWK-N 427
+ S + + RN + + + ++ + +
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 428 IRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTI 487
L + + + + NN++ G +P + L L L++S NNL G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 488 PPCLGNFTTQLITLHLKNNSL 508
P GN NN
Sbjct: 285 PQ-GGNLQR-FDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 49/288 (17%), Positives = 93/288 (32%), Gaps = 16/288 (5%)
Query: 66 NPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSL 125
+ + G++ + ++ +L LS L L +NL L+ L++G N +
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLV 90
Query: 126 IKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSP 185
+ + + L ++ T + G PD + + L L N P +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
L + + SG IP S G+ L T N + T + S ++
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL-SRNML 209
Query: 246 GQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPI-DGFQSPNS 304
+ G T + + +L ++L N++ G + G
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 305 LEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLL 352
L +++ N + G IP L+ +NN L
Sbjct: 270 LHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYANNKCL 304
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 54/266 (20%), Positives = 88/266 (33%), Gaps = 22/266 (8%)
Query: 3 DNVTGNVIGLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKEL 62
D T V LDL S L S+L L +L L + N L I P +L +L
Sbjct: 46 DTQTYRVNNLDL--SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 63 TYLNPSFSNFGGLVPSEISHLSKLTHLGLSC-------------------RVLTIEQRTF 103
YL + +N G +P +S + L L S + +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 104 DLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLR 163
+ S + L + + + + ++ + +F
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 164 VLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGS 223
L L K S L LDL + G +P + L FL ++++++ N G
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283
Query: 224 IPTSTGNLSKATEILFASNHLTGQLP 249
IP GNL + +A+N P
Sbjct: 284 IPQG-GNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 50.1 bits (118), Expect = 4e-07
Identities = 54/267 (20%), Positives = 83/267 (31%), Gaps = 8/267 (2%)
Query: 57 GRLKELTYLNPSFSNFGGL--VPSEISHLSKLTHLGLS-CRVLTIEQRTFDLLASNLTKL 113
+ + L+ S N +PS +++L L L + L + L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 114 SLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHL 173
+ + L+ T+ LD S + G P I LPNL + GN
Sbjct: 107 YI----THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 174 TGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSK 233
S L + L L VD++ G G+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 234 ATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLT 293
+I A N L L DL N + G +P L L L S+N+++N L
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGL-DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 294 GPIDGFQSPNSLEEVHLEKNQIHGTIP 320
G I + + N+ P
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 48/283 (16%), Positives = 84/283 (29%), Gaps = 26/283 (9%)
Query: 330 IRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNS 389
+ D ++ + LDLS NL I SL +L L+F ++
Sbjct: 41 VLCDTDTQTYRVNNLDLSGLNL-----PKPYPIPSSLANLPYLNFL---------YIGGI 86
Query: 390 EKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPP--- 446
+ G I L L +++ ++ I+TL + P
Sbjct: 87 NNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 447 ---PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHL 503
P+ N++SG IP S S L N P
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205
Query: 504 KNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563
+N + + + + L+K + +++ NN I T P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL--NGLDLRNNRIYGTLPQG 263
Query: 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEF 606
L L L L + N G + + + Q + + N+
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKC 303
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 45/277 (16%), Positives = 81/277 (29%), Gaps = 22/277 (7%)
Query: 76 VPSEISHLSKLTHLGLSCRVLT-IEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNL 134
VP I + L ++ + +F L++L L S L+ I + L
Sbjct: 26 VPVGIPAA--SQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTGL 79
Query: 135 SSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLS 194
+ +++ P L L L+L + L+ L L +
Sbjct: 80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 195 DFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSG 254
+ +L L + + + L +L N + PH
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 255 LLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQ 314
L L L LF N+L L L +L + L N L++ ++
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259
Query: 315 IHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNL 351
+ ++P L L+ N+L
Sbjct: 260 VPCSLPQR---------------LAGRDLKRLAANDL 281
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 3e-07
Identities = 38/239 (15%), Positives = 72/239 (30%), Gaps = 33/239 (13%)
Query: 405 KSLIDLDLSNNFLTHIALHPWKNIRTLDLRN-------NKIQGSILVPPPSTEVFLVSNN 457
+ + L N ++H+ ++ R L + + ++ L N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 458 KLSGQIPPYICSLSSLKYLSLSHN-----------------------NLSGTIPPCLGNF 494
+L P L L L L N +P
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 495 TTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNN 554
L L L N + F ++ L+ N+ P + +L + + N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 555 MINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRR 613
++ L L L+ L L N + C++ +++ L+ S +E LP+R
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAW--LQKFRGSSSEVPCSLPQR 267
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 50/327 (15%), Positives = 85/327 (25%), Gaps = 79/327 (24%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLT 245
+ + L + S S L + + + L+ ++ + N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 246 GQL-PHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG-FQSPN 303
+ P GL L L L LQ P L +L + L N L D F+
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
+L + L N+I + F L +L L L N +
Sbjct: 154 NLTHLFLHGNRISS------------VPERAFRGLHSLDRLLLHQNRVAHVHPH------ 195
Query: 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH 423
+F + N+ + L AL
Sbjct: 196 ---------AFRDLGRLMTLYLFANN------------------------LSALPTEALA 222
Query: 424 PWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483
P + ++ L L +N P + L+ S + +
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARP----------------------LWAWLQKFRGSSSEV 260
Query: 484 SGTIPPCLGNFTTQLITLHLKNNSLEG 510
++P L L N L+G
Sbjct: 261 PCSLPQRLAG----RDLKRLAANDLQG 283
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 36/202 (17%), Positives = 63/202 (31%), Gaps = 6/202 (2%)
Query: 406 SLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPP 465
S ++++ LT + K+ L L N + ++ L
Sbjct: 11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELT 68
Query: 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLH-LKNNSLEGHIHDTFENASNIQS 524
+ +L L + + L T +T+ + N L +Q
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPL 584
L N+ + P L KLE +++ NN + + L L L L+L+ N Y
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY--- 185
Query: 585 CKSITTFSFQALRIIDLSRNEF 606
F L L N +
Sbjct: 186 TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 38/230 (16%), Positives = 66/230 (28%), Gaps = 31/230 (13%)
Query: 279 LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338
+ S + VN LT P +HL +N ++ ++
Sbjct: 9 VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLAT------------LMPY 54
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
L L+L + +L L + + ++ S + +
Sbjct: 55 TRLTQLNLDRAE---------LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 399 HDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNK 458
S + + L L+ N + +L P P E ++NN
Sbjct: 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELK------TLPPGLLTPTPKLEKLSLANNN 159
Query: 459 LSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSL 508
L+ + L +L L L N+L TIP L L N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS-HLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 7/209 (3%)
Query: 108 SNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYL 167
S + ++ NL+ + P +L T L LS + + L L L
Sbjct: 7 SKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTS 227
+ + + P+ + +P L L +D+++ +
Sbjct: 63 DRAEL---TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 228 TGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNL 287
L + E+ N L P ++ L L L N+L L L +L ++ L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 288 AWNKLTGPIDGFQSPNSLEEVHLEKNQIH 316
N L GF + L L N
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.004
Identities = 41/229 (17%), Positives = 72/229 (31%), Gaps = 32/229 (13%)
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
S EV+ +K + +P L K+ L LS N L +F+ +
Sbjct: 11 SHLEVNCDKRNLT-ALPPDLP--------------KDTTILHLSENLLYTFSLA----TL 51
Query: 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH 423
L +L+ +++ +S + + L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-----------LGQTLP 100
Query: 424 PWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483
+ R + L + + N+L P + L+ LSL++NNL
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKF 532
+ L L TL L+ NSL I F + + L+ N +
Sbjct: 161 TELPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 37/275 (13%), Positives = 83/275 (30%), Gaps = 37/275 (13%)
Query: 259 TNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGT 318
LDL G +L V L + +++ + + P+ SP ++ + L + I +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 319 IPSSLFQLCGTIR-------------FDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYS 365
+ C ++ + +K NL L+LS + S + S
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSS 119
Query: 366 LPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW 425
L +L+ S C + I++ + G++ + + +
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179
Query: 426 KNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSH----- 480
++ + N + L + + + + +LK L +
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239
Query: 481 ----------------NNLSGTIPPCLGNFTTQLI 499
++ + P +GN Q I
Sbjct: 240 TLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 5/139 (3%)
Query: 429 RTLDLRNNKIQGSIL--VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGT 486
+TLDL + + + F + + + S ++++ LS++ + +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61
Query: 487 IPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL--NCNKFEGSLPRSLAKCV 544
+ + ++L L L+ L I +T SN+ +L E +L L+ C
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 545 KLEVVNVGNNMINDTFPCW 563
+L+ +N+
Sbjct: 122 RLDELNLSWCFDFTEKHVQ 140
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 6/209 (2%)
Query: 31 LFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHL- 89
F +Q ++L+ + S + + +L L+ + + ++ S L L
Sbjct: 42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
Query: 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQ 149
C + L + + L ++ ++S T+T L+LSG R
Sbjct: 102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 161
Query: 150 GNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCN----WSSPLRELDLS-LSDFSGEIPYSI 204
D L+ L C + L+ L LS D E +
Sbjct: 162 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221
Query: 205 GNLLFLETVDITYCNFMGSIPTSTGNLSK 233
G + L+T+ + G++ L
Sbjct: 222 GEIPTLKTLQVFGIVPDGTLQLLKEALPH 250
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 15/240 (6%)
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVS-----EFPSFLRNSEKIH 393
+ + + + + +S + + SN + S + +
Sbjct: 23 QGVIAFRCPRSFM-----DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77
Query: 394 GRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFL 453
+ +L N+ L + L L+ S L + F
Sbjct: 78 LEGLRLSDPIVNTL----AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133
Query: 454 VSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIH 513
+ + + +++ L N + + + + L+
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193
Query: 514 DTFENASNIQSFDL-NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKI 572
F + +Q L C L + L+ + V + + T +LP L+I
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 253
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 35/229 (15%), Positives = 67/229 (29%), Gaps = 22/229 (9%)
Query: 279 LPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL 338
L + + + + +T + + + + + + L
Sbjct: 18 LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTT--------------IEGVQYL 62
Query: 339 KNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISK 398
NL L+L +N + N+ L + ++ S
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122
Query: 399 HDSKGWKSLIDLDLSNNFLTHIAL--HPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSN 456
G +L L L N +T+I+ + L +
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 457 NKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
NK+S P + SL +L + L +N +S P L N + L + L N
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT-SNLFIVTLTN 226
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 3e-06
Identities = 56/465 (12%), Positives = 124/465 (26%), Gaps = 30/465 (6%)
Query: 132 LNLSSTMTDLDLSGTRIQGN-FPDQIFLLPNLRVLYLCGN-------IHLTGYLPKCNWS 183
L++ S LD+ + + + + LL +V+ L ++ L
Sbjct: 2 LDIQS----LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN--- 54
Query: 184 SPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNH 243
L EL+L ++ + + L + I + T G ++ +
Sbjct: 55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 114
Query: 244 LTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPN 303
L ++ G L L Q ++ SL + +
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174
Query: 304 SLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIK 363
++ + + + C S + S S + +
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234
Query: 364 YSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALH 423
+ + ++ + S LR I+ ++ S L+
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294
Query: 424 PWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNL 483
L G L + +S +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 354
Query: 484 SGTIPPCLGNF--TTQLITLHLKNNSLEG----HIHDTFENASNIQSFDLNCNKFEGSLP 537
+G C G + L L L + + + T +++ DL+ N +
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414
Query: 538 RSLAKCVK-----LEVVNVGNNMINDTFPCWLGSL----PLLKIL 573
L + V+ LE + + + ++ L +L P L+++
Sbjct: 415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 58/450 (12%), Positives = 114/450 (25%), Gaps = 20/450 (4%)
Query: 86 LTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLS---LIKPFSLLNLSSTMTDLD 142
+ L + C L+ + + L L + ++ L L+ S L ++ + +L+
Sbjct: 4 IQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 143 LSGTRIQGNFPDQIF-----LLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFS 197
L + + ++ L L N LTG S+ L S
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 198 GEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLY 257
+ G L E + C + + E L +
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317
+ + K L S + + S SL E+ L N++
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
+ L + + L +K + +L
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNK 437
+ + + + + L N R D +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ-ISNNRLEDAGVRE 359
Query: 438 IQGSILVPPPSTEVFLVSNNKLSGQIPPYICS----LSSLKYLSLSHNNLSGTIPPCLG- 492
+ + P V +++ +S + + SL+ L LS+N L L
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419
Query: 493 ---NFTTQLITLHLKNNSLEGHIHDTFENA 519
L L L + + D +
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.3 bits (104), Expect = 4e-06
Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 410 LDLSNNFLTHI-ALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYIC 468
L L++ LT + L + LDL +N+++ + ++ + + + +
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEG 510
+L L+ L L +N L + +L+ L+L+ NSL
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 261 LDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIP 320
L L L V L L + ++L+ N+L + LE + N +
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 321 SSLF-----------QLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSL 369
+ +L + L L+L N+ L + LPS+
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSV 119
Query: 370 LKL 372
+
Sbjct: 120 SSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 474 KYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFE 533
+ L L+H +L T+ L + L L +N L ++ + N E
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLL-LVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALE 56
Query: 534 GSLPRSLAKCVKLEVVNVGNNMINDT-FPCWLGSLPLLKILILRSNRF 580
+A +L+ + + NN + + L S P L +L L+ N
Sbjct: 57 N--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 8e-06
Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 1/136 (0%)
Query: 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
P + + + ++ +L L + + + +L L +
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLG 565
+ L D F + +L+ N E +++ E+V GN + WL
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 566 SLPLLKILILRSNRFY 581
+ + +
Sbjct: 126 RWEEEGLGGVPEQKLQ 141
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 2/117 (1%)
Query: 465 PYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQS 524
P C L + + L L+ +++
Sbjct: 2 PDACCPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 525 FDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581
+ + P + +L +N+ N ++ L+ L+L N +
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLH 116
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 58/344 (16%), Positives = 100/344 (29%), Gaps = 38/344 (11%)
Query: 100 QRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLL 159
R D L +L L +LG ++L P +L L S + P+ L
Sbjct: 30 SRLRDCLDRQAHELELNNLGLSSL----PELPPHL----ESLVASCNSLT-ELPELPQSL 80
Query: 160 --PNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITY 217
+ L L L S+ E L + S + N + D+
Sbjct: 81 KSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP 140
Query: 218 CNFMGSIPTSTGNLSKATEILFA-SNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWL 276
+ + + L + L L+ + + + L
Sbjct: 141 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 200
Query: 277 FTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFS 336
LP L ++ N L D S +L + S F F S
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260
Query: 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRI 396
+L + +++N + PSL +L+ SN + E P+
Sbjct: 261 ELPPNLYYLNASSNE-------IRSLCDLPPSLEELNVSNNKLIELPALPPR-------- 305
Query: 397 SKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQG 440
L L S N L + P +N++ L + N ++
Sbjct: 306 ----------LERLIASFNHLAEVPELP-QNLKQLHVEYNPLRE 338
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 49/321 (15%), Positives = 91/321 (28%), Gaps = 24/321 (7%)
Query: 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKAT-------EIL 238
EL+L+ S +P +L L + CN + +P +L +
Sbjct: 40 AHELELNNLGLS-SLPELPPHLESL----VASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 239 FASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDG 298
L + + + + L LP L ++
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154
Query: 299 FQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD----LSNNNLLSF 354
+L + + L + L+ L L L+ +
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214
Query: 355 TSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSN 414
D+ SL +L ++ E P L + S SN
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274
Query: 415 NFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLK 474
+ ++ L++ NNK+ + PP E + S N L+ ++P +LK
Sbjct: 275 EIRSLC--DLPPSLEELNVSNNKLI-ELPALPPRLERLIASFNHLA-EVPE---LPQNLK 327
Query: 475 YLSLSHNNLSGTIPPCLGNFT 495
L + +N L P +
Sbjct: 328 QLHVEYNPLR-EFPDIPESVE 347
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 10/96 (10%)
Query: 455 SNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD 514
N S +I SL+ L++S+N L +P L L N H+ +
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFN----HLAE 318
Query: 515 TFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVN 550
E N++ + N P L + +
Sbjct: 319 VPELPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.3 bits (87), Expect = 0.002
Identities = 47/328 (14%), Positives = 92/328 (28%), Gaps = 29/328 (8%)
Query: 258 LTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHG 317
L+L L +P P L S+ + N LT + + P SL+ + ++ N +
Sbjct: 40 AHELELNNLGLS-SLPELP---PHLESLVASCNSLT---ELPELPQSLKSLLVDNNNLKA 92
Query: 318 TIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNC 377
+ +Q KL LQ + S + + +
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 378 NVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNK 437
L I+ + L + L +N+ L
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 438 IQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLS-------------LSHNNLS 484
+P + ++ P + + +S L + N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 485 GTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCV 544
L + L L++ NN L + ++ + N +P
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPELPQ--- 324
Query: 545 KLEVVNVGNNMINDTFPCWLGSLPLLKI 572
L+ ++V N + FP S+ L++
Sbjct: 325 NLKQLHVEYNPLR-EFPDIPESVEDLRM 351
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 18/185 (9%)
Query: 168 CGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSI-GNLLFLETVDITYCNFMGSIPT 226
C L +P+ + EL L+ ++ + G L L +++ G P
Sbjct: 15 CTGRGLK-EIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 227 STGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVN 286
+ S E+ N + GL L L+L+ N + +P L SL S+N
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 287 LAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDL 346
LA N L + L PS + +++Q DL
Sbjct: 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV---------------RDVQIKDL 177
Query: 347 SNNNL 351
++
Sbjct: 178 PHSEF 182
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 37.1 bits (84), Expect = 0.003
Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 7/174 (4%)
Query: 410 LDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQI---PPY 466
+D + L I + L L +N++ LV Q+ P
Sbjct: 13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72
Query: 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFD 526
+S N I + QL TL+L +N + + +FE+ +++ S +
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 527 LNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRF 580
L N F + + + G + ++I L + F
Sbjct: 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS----KVRDVQIKDLPHSEF 182
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 0.001
Identities = 30/177 (16%), Positives = 60/177 (33%), Gaps = 17/177 (9%)
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSF-------LRN 388
++L ++ + +N+++ S LP++ KL + +++
Sbjct: 43 NELNSIDQIIANNSDIKSVQGIQY------LPNVTKLFLNGNKLTDIKPLANLKNLGWLF 96
Query: 389 SEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS 448
++ + K N L + +L L NNKI ++ +
Sbjct: 97 LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156
Query: 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505
L + I P + L+ L+ L LS N++S L L L L +
Sbjct: 157 KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRALAGL-KNLDVLELFS 209
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 4/141 (2%)
Query: 25 IDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84
I+ + + L+L I L + ++ S + L L
Sbjct: 8 IEQAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLR 63
Query: 85 KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLS 144
+L L ++ + D +LT+L L + L + P + L + + L
Sbjct: 64 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123
Query: 145 GTRIQGNFPDQIFLLPNLRVL 165
T + I+ +P +RVL
Sbjct: 124 VTNKKHYRLYVIYKVPQVRVL 144
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 16/167 (9%)
Query: 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGR 395
+ L + L + S L +L +++FSN +++ ++ +
Sbjct: 37 TDLDQVTTLQADRLGIKSIDGVEY------LNNLTQINFSNNQLTDITPLKNLTKLVDIL 90
Query: 396 ISKHDSKGWKSLIDLDLS-------NNFLTHIALHPWKNIRTLDLRNNKIQGSILVPPPS 448
++ + L +L N L N+ L+L +N I + +
Sbjct: 91 MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 150
Query: 449 TEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495
+ L ++ + P + +L++L+ L +S N +S L T
Sbjct: 151 SLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLT 194
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 683 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.92 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.86 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.65 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.64 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.54 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.53 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.51 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.5 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.48 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.47 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.43 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.41 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.28 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.27 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.27 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.19 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.36 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.35 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.85 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.77 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.3 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.07 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=2.5e-25 Score=229.51 Aligned_cols=125 Identities=24% Similarity=0.325 Sum_probs=72.9
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 546 (683)
+..+++|++|++++|++. .+++ +.... .++.+++++|++.+. ..+..+++++.|++++|++++.. .+..+++|
T Consensus 259 ~~~~~~L~~L~l~~~~l~-~~~~-~~~~~-~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L 331 (384)
T d2omza2 259 LSGLTKLTELKLGANQIS-NISP-LAGLT-ALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKL 331 (384)
T ss_dssp GTTCTTCSEEECCSSCCC-CCGG-GTTCT-TCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTC
T ss_pred ccccccCCEeeccCcccC-CCCc-ccccc-ccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCC
Confidence 455566666666666665 2322 33333 566666666666542 23555666666666666666432 25666666
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCC
Q 043978 547 EVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604 (683)
Q Consensus 547 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 604 (683)
++|++++|++++ ++ .++++++|++|++++|++++..| +..+++|+.|+|++|
T Consensus 332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~----l~~l~~L~~L~L~~N 383 (384)
T d2omza2 332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP----LANLTRITQLGLNDQ 383 (384)
T ss_dssp CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCCE
T ss_pred CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh----hccCCCCCEeeCCCC
Confidence 666666666654 22 46666666666666666654422 355666666666665
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=2.7e-25 Score=229.20 Aligned_cols=188 Identities=20% Similarity=0.317 Sum_probs=148.7
Q ss_pred CCCCceEEeCCCCCCCccCC-CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEE
Q 043978 424 PWKNIRTLDLRNNKIQGSIL-VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLH 502 (683)
Q Consensus 424 ~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ 502 (683)
.+++++.+++++|.+++..+ ..+++|++|++++|.+... +.+..+++|+.|++++|.+.+ ++. +... ++|+.|+
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-~~~~-~~L~~L~ 269 (384)
T d2omza2 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-LSGL-TKLTELK 269 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTTC-TTCSEEE
T ss_pred cccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCC-CCc-cccc-ccCCEee
Confidence 44555555666555554332 2456667777777776643 467889999999999999984 432 4444 4999999
Q ss_pred CCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcc
Q 043978 503 LKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYG 582 (683)
Q Consensus 503 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 582 (683)
+++|++.+.. .+..++.++.+++++|.+++ ...+..++++++|++++|++++..+ +..+++|++|++++|++++
T Consensus 270 l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~ 343 (384)
T d2omza2 270 LGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343 (384)
T ss_dssp CCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC
Confidence 9999998654 47789999999999999985 3458999999999999999987543 8899999999999999875
Q ss_pred cCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccc
Q 043978 583 PLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQAT 629 (683)
Q Consensus 583 ~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n 629 (683)
. + .+..+++|++|++++|++++..| |.++++|+.|++++|
T Consensus 344 l-~---~l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~~N 383 (384)
T d2omza2 344 V-S---SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383 (384)
T ss_dssp C-G---GGGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECCCE
T ss_pred C-h---hHcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCCCC
Confidence 3 2 46789999999999999997544 889999999999987
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.93 E-value=8.1e-27 Score=233.00 Aligned_cols=250 Identities=26% Similarity=0.335 Sum_probs=152.4
Q ss_pred cEEEEECCCCCCCcce--eecCCCcccccccCCeeeCCC-CCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCC
Q 043978 8 NVIGLDLHGSCSWLRG--TIDDNSTLFRLSHLQSLNLAF-NNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLS 84 (683)
Q Consensus 8 ~v~~L~L~~~~~~~~~--~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~ 84 (683)
||++|||++ +.+.+ .+++ .+.++++|++|+|++ |.+.+. +|..|+++++|++|++++|.+.+..+..+..+.
T Consensus 51 ~v~~L~L~~--~~l~g~~~lp~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~ 125 (313)
T d1ogqa_ 51 RVNNLDLSG--LNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CEEEEEEEC--CCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred EEEEEECCC--CCCCCCCCCCh--HHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchh
Confidence 666666666 55554 2344 566666666666664 455443 566666666666666666666666666666666
Q ss_pred CCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcE
Q 043978 85 KLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRV 164 (683)
Q Consensus 85 ~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 164 (683)
+|++++++.|.+. ..+|..+.++++++++++++|.+.+..|..+..+...++.+++++|++++..+..+..+.
T Consensus 126 ~L~~l~l~~N~~~---~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~---- 198 (313)
T d1ogqa_ 126 TLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---- 198 (313)
T ss_dssp TCCEEECCSSEEE---SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----
T ss_pred hhccccccccccc---ccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc----
Confidence 6666666665544 333444555555555555555555544555555523335555555555544444433332
Q ss_pred EEccCCCCCcccCCCCCCCCCCCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccc
Q 043978 165 LYLCGNIHLTGYLPKCNWSSPLRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHL 244 (683)
Q Consensus 165 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 244 (683)
...++++.+...+.+|..+..++.++.++++++.+.+.++ .++.+++|+.|++++|++
T Consensus 199 ---------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l 256 (313)
T d1ogqa_ 199 ---------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp ---------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCC
T ss_pred ---------------------cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCee
Confidence 3345555555555666666667777777777776664433 466667777777777777
Q ss_pred cccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcc
Q 043978 245 TGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKL 292 (683)
Q Consensus 245 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 292 (683)
++.+|..++++++|++|++++|.+++.+|. +..+++|+.+++++|+.
T Consensus 257 ~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred cccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 777777777777777777777777766664 45667777777777763
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.3e-23 Score=208.68 Aligned_cols=287 Identities=21% Similarity=0.260 Sum_probs=195.2
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCC-CCCCCCCCcEEECCCCcCcccCCccchhccCccccccc
Q 043978 257 YLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPID-GFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQF 335 (683)
Q Consensus 257 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~ 335 (683)
..+.++-++..++ .+|..+. ++++.|++++|+++...+ .|..+++|++|++++|.+....| ..|
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~------------~~f 75 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP------------GAF 75 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT------------TTT
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccch------------hhh
Confidence 3566777777776 4565543 467777777777766554 35566677777777776663222 256
Q ss_pred CCCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCC
Q 043978 336 SKLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNN 415 (683)
Q Consensus 336 ~~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 415 (683)
..+++|+.|++++|+++.++. ...+.++.|.+.+|.+..++.... .
T Consensus 76 ~~l~~L~~L~l~~n~l~~l~~-------~~~~~l~~L~~~~n~l~~l~~~~~--------------~------------- 121 (305)
T d1xkua_ 76 APLVKLERLYLSKNQLKELPE-------KMPKTLQELRVHENEITKVRKSVF--------------N------------- 121 (305)
T ss_dssp TTCTTCCEEECCSSCCSBCCS-------SCCTTCCEEECCSSCCCBBCHHHH--------------T-------------
T ss_pred hCCCccCEecccCCccCcCcc-------chhhhhhhhhccccchhhhhhhhh--------------h-------------
Confidence 666667777777666555532 123345555555555444333211 1
Q ss_pred cccccCCCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhcc
Q 043978 416 FLTHIALHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495 (683)
Q Consensus 416 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 495 (683)
.......++...|... .....+..+..+++|+.+++++|.+. .+|..+ .
T Consensus 122 --------~~~~~~~l~~~~n~~~-------------------~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~ 170 (305)
T d1xkua_ 122 --------GLNQMIVVELGTNPLK-------------------SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---P 170 (305)
T ss_dssp --------TCTTCCEEECCSSCCC-------------------GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---C
T ss_pred --------cccccccccccccccc-------------------ccCCCccccccccccCccccccCCcc-ccCccc---C
Confidence 1222333333333221 11234456788889999999999987 666554 3
Q ss_pred CcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 496 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
++|+.|++++|......+..|.+++.++.|++++|.+++..+..+.++++|++|++++|+++ .+|.+|..+++|++|++
T Consensus 171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~L 249 (305)
T d1xkua_ 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 249 (305)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEEC
Confidence 58999999999999888899999999999999999999888899999999999999999998 46778999999999999
Q ss_pred cCCcCcccCCCCc----cccCCCCCcEEeCCCCcCC-CCCcHHHHhcchhhccc
Q 043978 576 RSNRFYGPLCKSI----TTFSFQALRIIDLSRNEFK-DFLPRRNFTSMEAMKNV 624 (683)
Q Consensus 576 ~~n~l~~~~~~~~----~~~~l~~L~~L~ls~n~~~-~~~p~~~~~~~~~L~~l 624 (683)
++|+++......+ .....++|+.|++++|++. ..++..+|.-+.....+
T Consensus 250 s~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~~~ 303 (305)
T d1xkua_ 250 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303 (305)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGE
T ss_pred CCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCccc
Confidence 9999875432221 2345678999999999986 34565677665554444
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.92 E-value=3.1e-25 Score=221.42 Aligned_cols=248 Identities=27% Similarity=0.330 Sum_probs=182.2
Q ss_pred CCCEEeCCCCCCCCC--CCccCcCCCCCCEEeCCC-CcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCC
Q 043978 61 ELTYLNPSFSNFGGL--VPSEISHLSKLTHLGLSC-RVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSST 137 (683)
Q Consensus 61 ~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~ls~-n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 137 (683)
+++.|+|+++.+.+. +|..++++++|++|++++ |.+. +.+|..+.++++|++|++++|.+.+..+..+..+ +.
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~---g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~-~~ 126 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE---SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC-TT
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc---cccccccccccccchhhhccccccccccccccch-hh
Confidence 455566666655542 455666666666666654 4444 3445555666666666666666666666666666 67
Q ss_pred ccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCC-CCCCCCC-CCEEECCCCcCccccCccccCCCCCCEEEc
Q 043978 138 MTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLP-KCNWSSP-LRELDLSLSDFSGEIPYSIGNLLFLETVDI 215 (683)
Q Consensus 138 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~-L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 215 (683)
|+++++++|.+...+|..+..+++|+++++++| .+.+.+| .+..+.. ++.+++++|.+.+..|..+..+..+ .+++
T Consensus 127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n-~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l 204 (313)
T d1ogqa_ 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEEC
T ss_pred hcccccccccccccCchhhccCcccceeecccc-ccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 777777777766666677777777777777776 5554444 4444444 3777888888887777777776554 7999
Q ss_pred cCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCc
Q 043978 216 TYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGP 295 (683)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 295 (683)
..+...+..|..+..+++++.++++++.+.+.++ .+..+++|+.|++++|++++.+|.+++.+++|+.|++++|++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~ 283 (313)
T d1ogqa_ 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence 9999888888889999999999999999886554 578889999999999999989999999999999999999999876
Q ss_pred CCCCCCCCCCcEEECCCCcC
Q 043978 296 IDGFQSPNSLEEVHLEKNQI 315 (683)
Q Consensus 296 ~~~~~~~~~L~~L~L~~n~i 315 (683)
++.+..+++|+.+++++|+.
T Consensus 284 iP~~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 284 IPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSE
T ss_pred CCCcccCCCCCHHHhCCCcc
Confidence 77777788888888888873
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=2.2e-22 Score=199.76 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=50.4
Q ss_pred CCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCC
Q 043978 233 KATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEK 312 (683)
Q Consensus 233 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~ 312 (683)
++++|++++|+++...+.+|.++++|++|++++|.+....|..|..++.|+.|++++|+++.....+ ...++.|.+.+
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~ 109 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHE 109 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhccc
Confidence 3444444444444333334455555555555555555444444555555555555555554332221 23455566666
Q ss_pred CcCcccCCccchhccCcccccccCCCCCCCEEeCCCCC
Q 043978 313 NQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLDLSNNN 350 (683)
Q Consensus 313 n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 350 (683)
|.+.+ +....+.....+..++...|.
T Consensus 110 n~l~~------------l~~~~~~~~~~~~~l~~~~n~ 135 (305)
T d1xkua_ 110 NEITK------------VRKSVFNGLNQMIVVELGTNP 135 (305)
T ss_dssp SCCCB------------BCHHHHTTCTTCCEEECCSSC
T ss_pred cchhh------------hhhhhhhcccccccccccccc
Confidence 55542 111234455555666665554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9.9e-22 Score=192.58 Aligned_cols=207 Identities=21% Similarity=0.208 Sum_probs=141.2
Q ss_pred cCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCccCC---CCCCCCcEEEcc-CCcccCCCCccccCCCCCCEEEc
Q 043978 406 SLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGSIL---VPPPSTEVFLVS-NNKLSGQIPPYICSLSSLKYLSL 478 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~-~n~i~~~~~~~l~~l~~L~~L~L 478 (683)
.+++|++++|+++.++. ..+++|+.|++++|++..... ...+.++.+... .+.+....+..|.++++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 34555555555554432 234455555555555543222 234455555443 34455555677888888888888
Q ss_pred CCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCc
Q 043978 479 SHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMIND 558 (683)
Q Consensus 479 s~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 558 (683)
++|.+. .++...+....+|+.+++++|+++++.+.+|..+++|+.|++++|.+++..+.+|.++++|+++++++|.+++
T Consensus 113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~ 191 (284)
T d1ozna_ 113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (284)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence 888876 4444444444578888888888887777778888888888888888887777788888888888888888887
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHH
Q 043978 559 TFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNF 615 (683)
Q Consensus 559 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~ 615 (683)
..|.+|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+..+|
T Consensus 192 i~~~~f~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~L~~L~l~~N~l~C~C~~~~l 246 (284)
T d1ozna_ 192 VHPHAFRDLGRLMTLYLFANNLSALPT--EALAPLRALQYLRLNDNPWVCDCRARPL 246 (284)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCH--HHHTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred cChhHhhhhhhcccccccccccccccc--cccccccccCEEEecCCCCCCCccchHH
Confidence 778888888888888888888876543 3456777888888888888776664443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.3e-21 Score=188.75 Aligned_cols=222 Identities=17% Similarity=0.149 Sum_probs=191.3
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCccC---CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCC-CcC
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGSI---LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSH-NNL 483 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~-n~i 483 (683)
..++.++++++.++..-.+.+++|++++|++++.. +..+++|++|++++|.+....+..+..+..++.+.... +.+
T Consensus 14 ~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 45677777788776655578999999999998643 45788999999999999998888999999999998764 555
Q ss_pred CCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCcc
Q 043978 484 SGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCW 563 (683)
Q Consensus 484 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 563 (683)
....+..+..+ ++|++|++++|.+....+..+...++|+.+++++|++++..+..|..+++|++|++++|.+....+.+
T Consensus 94 ~~l~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~ 172 (284)
T d1ozna_ 94 RSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (284)
T ss_dssp CCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhccc-ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence 53334445544 49999999999998888889999999999999999999888889999999999999999999888899
Q ss_pred ccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceeee
Q 043978 564 LGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQY 633 (683)
Q Consensus 564 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~~ 633 (683)
|.++++|+++++++|++.+..| ..+..+++|++||+++|++.+ +|...|+.+.+|+++++++|++.-
T Consensus 173 f~~l~~L~~l~l~~N~l~~i~~--~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 173 FRGLHSLDRLLLHQNRVAHVHP--HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred hccccccchhhhhhccccccCh--hHhhhhhhccccccccccccc-ccccccccccccCEEEecCCCCCC
Confidence 9999999999999999997766 456788999999999999996 565889999999999999999863
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.4e-21 Score=185.63 Aligned_cols=208 Identities=22% Similarity=0.226 Sum_probs=157.5
Q ss_pred CCCcCcEEECCCCcccccCCCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcC
Q 043978 403 GWKSLIDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLS 479 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls 479 (683)
....+.+++.++++++.++..-.++++.|++++|++++. .+..+++|++|++++|+++.. +.+..+++|++|+++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLS 85 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECC
T ss_pred ccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--ccccccccccccccc
Confidence 334555566666666665433335567777777766543 234567777777777777643 235678899999999
Q ss_pred CCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCcc
Q 043978 480 HNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDT 559 (683)
Q Consensus 480 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 559 (683)
+|++. ..+..+..+. +|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++.
T Consensus 86 ~N~l~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~ 163 (266)
T d1p9ag_ 86 HNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (266)
T ss_dssp SSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred ccccc-cccccccccc-ccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence 99987 5566666555 899999999998888888888899999999999999877778888899999999999999888
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhc
Q 043978 560 FPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTS 617 (683)
Q Consensus 560 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~ 617 (683)
.+..|..+++|++|+|++|+++ .+|. .+..+++|+.|+|++|++.+...-.+|..
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~--~~~~~~~L~~L~L~~Np~~CdC~~~~l~~ 218 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLY-TIPK--GFFGSHLLPFAFLHGNPWLCNCEILYFRR 218 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCT--TTTTTCCCSEEECCSCCBCCSGGGHHHHH
T ss_pred CccccccccccceeecccCCCc-ccCh--hHCCCCCCCEEEecCCCCCCCcchHHHHH
Confidence 8888889999999999999987 4553 34678889999999999987655444544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.3e-21 Score=185.72 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=173.7
Q ss_pred CCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC
Q 043978 425 WKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504 (683)
Q Consensus 425 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 504 (683)
...+.+++.+++.++......++++++|++++|.+++..+..|.++++|++|++++|+++ .+|. +.. .++|++|+++
T Consensus 9 ~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~-l~~L~~L~Ls 85 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGT-LPVLGTLDLS 85 (266)
T ss_dssp STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSC-CTTCCEEECC
T ss_pred cCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccc-cccccccccc
Confidence 356677899999999754456678999999999999877788999999999999999998 5653 333 4599999999
Q ss_pred CCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccC
Q 043978 505 NNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 505 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
+|+++.. +..+.++++|+.|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++|+.+++++|++++..
T Consensus 86 ~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~ 164 (266)
T d1p9ag_ 86 HNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (266)
T ss_dssp SSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred ccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence 9999854 667889999999999999999888889999999999999999999888888889999999999999998765
Q ss_pred CCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhcccccccceee
Q 043978 585 CKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 585 ~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
+ ..+..+++|++||+++|+|+ .+|..+ ..++.|+.+++++|++.
T Consensus 165 ~--~~~~~l~~L~~L~Ls~N~L~-~lp~~~-~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 165 A--GLLNGLENLDTLLLQENSLY-TIPKGF-FGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp T--TTTTTCTTCCEEECCSSCCC-CCCTTT-TTTCCCSEEECCSCCBC
T ss_pred c--cccccccccceeecccCCCc-ccChhH-CCCCCCCEEEecCCCCC
Confidence 4 34578899999999999999 789654 46899999999999875
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=3.9e-17 Score=165.21 Aligned_cols=299 Identities=23% Similarity=0.261 Sum_probs=139.0
Q ss_pred ccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCCccCcCCCCCCEEeCCCCcCccccCCHHHHHccCCCCC
Q 043978 35 SHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGLVPSEISHLSKLTHLGLSCRVLTIEQRTFDLLASNLTKLS 114 (683)
Q Consensus 35 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~ 114 (683)
.++++|||+++.++. +|+. .++|++|++++|+++.+ |.. +.+|++|++++|.++
T Consensus 38 ~~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~l~~n~l~----------------- 91 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS--LPEL---PPHLESLVASCNSLTEL-PEL---PQSLKSLLVDNNNLK----------------- 91 (353)
T ss_dssp HTCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-----------------
T ss_pred cCCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCccc-ccc---hhhhhhhhhhhcccc-----------------
Confidence 357777777777643 4532 35677777777777644 433 345666666666544
Q ss_pred EEEcCCccCCcCChhhhhcCcCCccEEEcCCCcCCCCCCccCCCCCCCcEEEccCCCCCcccCCCCCCCCCCCEEECCCC
Q 043978 115 LLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGTRIQGNFPDQIFLLPNLRVLYLCGNIHLTGYLPKCNWSSPLRELDLSLS 194 (683)
Q Consensus 115 ~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~~ 194 (683)
.+ ..+++.|++|++++|.+.. +|. ++.+++|++|+++++ ....... ....+..+.+..+
T Consensus 92 ----------~l-----~~lp~~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~-~~~~~~~---~~~~l~~l~~~~~ 150 (353)
T d1jl5a_ 92 ----------AL-----SDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNN-SLKKLPD---LPPSLEFIAAGNN 150 (353)
T ss_dssp ----------CC-----CSCCTTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred ----------hh-----hhhcccccccccccccccc-ccc-hhhhccceeeccccc-ccccccc---ccccccchhhccc
Confidence 11 1122344555555554442 222 344455555555444 2221111 1223344444333
Q ss_pred cCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccCCcCcccCCc
Q 043978 195 DFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFGNSLQGKVPS 274 (683)
Q Consensus 195 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 274 (683)
... ....+..++.++.+++.++..... +. .....+.+...++.+. ..+ .+..++.|+.+++++|... ..+.
T Consensus 151 ~~~--~~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~ 221 (353)
T d1jl5a_ 151 QLE--ELPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD 221 (353)
T ss_dssp CCS--SCCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS
T ss_pred ccc--ccccccccccceeccccccccccc-cc---cccccccccccccccc-ccc-ccccccccccccccccccc-cccc
Confidence 322 122344455555555555544321 11 1122233333333332 122 2345566666666666544 2221
Q ss_pred cccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCC-CCCCEEeCCCCCccc
Q 043978 275 WLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKL-KNLQFLDLSNNNLLS 353 (683)
Q Consensus 275 ~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~ 353 (683)
...++..+.+..+.+..... ....+...++..+.+. .+..+ ......++..+.+..
T Consensus 222 ---~~~~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~-----------------~l~~l~~~~~~~~~~~~~~~~ 278 (353)
T d1jl5a_ 222 ---LPPSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFS-----------------GLSELPPNLYYLNASSNEIRS 278 (353)
T ss_dssp ---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-----------------EESCCCTTCCEEECCSSCCSE
T ss_pred ---cccccccccccccccccccc---cccccccccccccccc-----------------ccccccchhcccccccCcccc
Confidence 23455566666555443221 1234444555444433 11111 233445555555433
Q ss_pred cccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCCCCceEEeC
Q 043978 354 FTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPWKNIRTLDL 433 (683)
Q Consensus 354 l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l 433 (683)
++ ..+++|++|++++|+++.+|. .+++|+.|++++|+++.++. .+++|++|++
T Consensus 279 ~~--------~~~~~L~~L~Ls~N~l~~lp~------------------~~~~L~~L~L~~N~L~~l~~-~~~~L~~L~L 331 (353)
T d1jl5a_ 279 LC--------DLPPSLEELNVSNNKLIELPA------------------LPPRLERLIASFNHLAEVPE-LPQNLKQLHV 331 (353)
T ss_dssp EC--------CCCTTCCEEECCSSCCSCCCC------------------CCTTCCEEECCSSCCSCCCC-CCTTCCEEEC
T ss_pred cc--------ccCCCCCEEECCCCccCcccc------------------ccCCCCEEECCCCcCCcccc-ccCCCCEEEC
Confidence 31 134566666666666655542 23456666666666554432 2345555555
Q ss_pred CCCCCC
Q 043978 434 RNNKIQ 439 (683)
Q Consensus 434 ~~n~l~ 439 (683)
++|+++
T Consensus 332 ~~N~L~ 337 (353)
T d1jl5a_ 332 EYNPLR 337 (353)
T ss_dssp CSSCCS
T ss_pred cCCcCC
Confidence 555554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=1.6e-17 Score=168.01 Aligned_cols=298 Identities=24% Similarity=0.286 Sum_probs=145.4
Q ss_pred CCEEECCCCcCccccCccccCCCCCCEEEccCCcccccCCCCCCCCCCCCeeeccCccccccCCccccCCCCCCEEEccC
Q 043978 186 LRELDLSLSDFSGEIPYSIGNLLFLETVDITYCNFMGSIPTSTGNLSKATEILFASNHLTGQLPHHVSGLLYLTNLDLFG 265 (683)
Q Consensus 186 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 265 (683)
+++|+++++.++ .+|+. .++|++|++++|+++ .+|.. ..+|+.|++++|.++.. ++ + .+.|++|++++
T Consensus 40 l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~~ 107 (353)
T d1jl5a_ 40 AHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSN 107 (353)
T ss_dssp CSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCS
T ss_pred CCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--ccccccccccc
Confidence 445555555544 34432 244555555555555 33432 23455555555554421 11 1 12456666666
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcccCcCCCCCCCCCCcEEECCCCcCcccCCccchhccCcccccccCCCCCCCEEe
Q 043978 266 NSLQGKVPSWLFTLPSLVSVNLAWNKLTGPIDGFQSPNSLEEVHLEKNQIHGTIPSSLFQLCGTIRFDQFSKLKNLQFLD 345 (683)
Q Consensus 266 n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 345 (683)
|.+. .+|. ++.+++|+.|+++++.+...... ...+..+.+..+.... ...+..++.++.++
T Consensus 108 n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~--------------~~~l~~l~~l~~L~ 168 (353)
T d1jl5a_ 108 NQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE--------------LPELQNLPFLTAIY 168 (353)
T ss_dssp SCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS--------------CCCCTTCTTCCEEE
T ss_pred cccc-cccc-hhhhccceeeccccccccccccc---cccccchhhccccccc--------------cccccccccceecc
Confidence 6655 3332 34556666666665555432221 2344445544443321 11344455566666
Q ss_pred CCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccCCCCC
Q 043978 346 LSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIALHPW 425 (683)
Q Consensus 346 l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 425 (683)
+..|.....+. .....+.+...++.+..++.. ..++.++.+++++|.....
T Consensus 169 l~~n~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~----------------~~l~~L~~l~l~~n~~~~~----- 219 (353)
T d1jl5a_ 169 ADNNSLKKLPD--------LPLSLESIVAGNNILEELPEL----------------QNLPFLTTIYADNNLLKTL----- 219 (353)
T ss_dssp CCSSCCSSCCC--------CCTTCCEEECCSSCCSSCCCC----------------TTCTTCCEEECCSSCCSSC-----
T ss_pred ccccccccccc--------ccccccccccccccccccccc----------------ccccccccccccccccccc-----
Confidence 66655433211 112233344444333333221 3344555555555443332
Q ss_pred CCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCC
Q 043978 426 KNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKN 505 (683)
Q Consensus 426 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 505 (683)
+....++..+.+.++.+... + ...+.++..++..+.+. .++ .........++..
T Consensus 220 -----------------~~~~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~-~l~----~l~~~~~~~~~~~ 273 (353)
T d1jl5a_ 220 -----------------PDLPPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFS-GLS----ELPPNLYYLNASS 273 (353)
T ss_dssp -----------------CSCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-EES----CCCTTCCEEECCS
T ss_pred -----------------cccccccccccccccccccc-c---ccccccccccccccccc-ccc----cccchhccccccc
Confidence 22233334444444443321 1 12334555666555543 111 1222455666666
Q ss_pred CcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 506 NSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 506 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+.+.+. ...+++|++|++++|+++ .+|. .+++|+.|++++|+|+. +|. .+++|++|++++|++.
T Consensus 274 ~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~ 337 (353)
T d1jl5a_ 274 NEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR 337 (353)
T ss_dssp SCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred Cccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC
Confidence 666533 233567888888888777 3443 25677888888888774 443 2457888888888876
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6e-21 Score=201.27 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=89.7
Q ss_pred CCCCcEEEccCCcccCC----CCccccCCCCCCEEEcCCCcCCCCCCh----hhhhccCcccEEECCCCccccccc----
Q 043978 446 PPSTEVFLVSNNKLSGQ----IPPYICSLSSLKYLSLSHNNLSGTIPP----CLGNFTTQLITLHLKNNSLEGHIH---- 513 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~Ls~n~i~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~---- 513 (683)
...++.+++++|.+... ....+...+.++.+++++|.+.+.... .+......|+.+++++|.++....
T Consensus 254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~ 333 (460)
T d1z7xw1 254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 333 (460)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence 34445555555544321 112344566777777777776421111 112222367777777777665432
Q ss_pred ccccCCCCccEEEcCCCcccccC----chhhh-cCCCCcEEEccCCcCCcc----CCccccCCCCCCEEEccCCcCcccC
Q 043978 514 DTFENASNIQSFDLNCNKFEGSL----PRSLA-KCVKLEVVNVGNNMINDT----FPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 514 ~~~~~l~~L~~L~L~~n~l~~~~----~~~l~-~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
..+...++|++|+|++|++++.. +..+. ..+.|++|++++|.+++. ++..+..+++|++|+|++|+++...
T Consensus 334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g 413 (460)
T d1z7xw1 334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413 (460)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence 23344567777788777775422 22232 355677888888877653 3344556677888888887765321
Q ss_pred CCCc--cc-cCCCCCcEEeCCCCcCCC
Q 043978 585 CKSI--TT-FSFQALRIIDLSRNEFKD 608 (683)
Q Consensus 585 ~~~~--~~-~~l~~L~~L~ls~n~~~~ 608 (683)
.... .+ .....|+.|++.+|.+.+
T Consensus 414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 414 ILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 1000 01 122357888888887763
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=8.2e-20 Score=192.43 Aligned_cols=180 Identities=21% Similarity=0.181 Sum_probs=119.4
Q ss_pred CCCcCcEEECCCCccccc--------CCCCCCCceEEeCCCCCCCccCC-------CCCCCCcEEEccCCcccCCCCcc-
Q 043978 403 GWKSLIDLDLSNNFLTHI--------ALHPWKNIRTLDLRNNKIQGSIL-------VPPPSTEVFLVSNNKLSGQIPPY- 466 (683)
Q Consensus 403 ~~~~L~~L~l~~n~~~~~--------~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~i~~~~~~~- 466 (683)
..+.++.+++++|.+... .......++.+++++|.+..... ...+.++.+++++|.+.......
T Consensus 224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l 303 (460)
T d1z7xw1 224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303 (460)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 345677777777765432 12244667778888777653221 24567778888888775321111
Q ss_pred ----ccCCCCCCEEEcCCCcCCCCCChhhh---hccCcccEEECCCCcccccc----cccc-cCCCCccEEEcCCCcccc
Q 043978 467 ----ICSLSSLKYLSLSHNNLSGTIPPCLG---NFTTQLITLHLKNNSLEGHI----HDTF-ENASNIQSFDLNCNKFEG 534 (683)
Q Consensus 467 ----l~~l~~L~~L~Ls~n~i~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~L~~n~l~~ 534 (683)
......|+.+++++|.+.......+. ....+|++|+|++|++++.. +..+ ...+.|++|++++|.+++
T Consensus 304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 383 (460)
T d1z7xw1 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383 (460)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence 12346799999999988643222222 22248999999999987542 2333 346789999999999975
Q ss_pred c----CchhhhcCCCCcEEEccCCcCCccCCccc----c-CCCCCCEEEccCCcCcc
Q 043978 535 S----LPRSLAKCVKLEVVNVGNNMINDTFPCWL----G-SLPLLKILILRSNRFYG 582 (683)
Q Consensus 535 ~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~l~~n~l~~ 582 (683)
. ++..+..+++|++|++++|++++.....| . +...|+.|++.+|.+..
T Consensus 384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~ 440 (460)
T d1z7xw1 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440 (460)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence 3 34567788999999999999986533333 2 44579999999999863
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=6.6e-17 Score=151.93 Aligned_cols=186 Identities=25% Similarity=0.344 Sum_probs=102.0
Q ss_pred CCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCcccccC-CCCCCCceEEeCCCCCCCccCC
Q 043978 365 SLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNFLTHIA-LHPWKNIRTLDLRNNKIQGSIL 443 (683)
Q Consensus 365 ~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 443 (683)
.+.+|+.|++.+|.++.++.. ..+++|+.|++++|.++++. +..+++++.+++++|.++.
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~l----------------~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--- 99 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVTTIEGV----------------QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--- 99 (227)
T ss_dssp HHHTCCEEECTTSCCCCCTTG----------------GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC---
T ss_pred HcCCcCEEECCCCCCCcchhH----------------hcCCCCcEeecCCceeeccccccccccccccccccccccc---
Confidence 345556666666655554321 44556666666666555442 3344555555555544431
Q ss_pred CCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCcc
Q 043978 444 VPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQ 523 (683)
Q Consensus 444 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 523 (683)
+ ..+..+++|+.++++++...+ ++ .+... +.+..+.++++.+... ..+..+++|+
T Consensus 100 -------------------i-~~l~~l~~L~~l~l~~~~~~~-~~-~~~~~-~~~~~l~~~~~~~~~~--~~~~~~~~L~ 154 (227)
T d1h6ua2 100 -------------------V-SAIAGLQSIKTLDLTSTQITD-VT-PLAGL-SNLQVLYLDLNQITNI--SPLAGLTNLQ 154 (227)
T ss_dssp -------------------C-GGGTTCTTCCEEECTTSCCCC-CG-GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCC
T ss_pred -------------------c-ccccccccccccccccccccc-cc-hhccc-cchhhhhchhhhhchh--hhhccccccc
Confidence 1 235556666666666665542 21 22222 2566666666665433 2345566666
Q ss_pred EEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCC
Q 043978 524 SFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLS 602 (683)
Q Consensus 524 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls 602 (683)
.|++++|.+.+. ..+.++++|++|++++|++++. + .++++++|++|++++|++++.. .+..+++|++|+++
T Consensus 155 ~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~----~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 155 YLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLT 225 (227)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG----GGTTCTTCCEEEEE
T ss_pred cccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc----ccccCCCCCEEEee
Confidence 666666666532 2366666677777777666543 2 2566666777777777665432 24566667776665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1e-17 Score=152.83 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=81.4
Q ss_pred CCCcEEEccCCcccC-CCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 447 PSTEVFLVSNNKLSG-QIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+++++|++++|+|+. ..+..|.++++|+.|++++|.+....+..+... ++|++|++++|+++.+.+++|.++++|+.|
T Consensus 29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~-~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L 107 (192)
T d1w8aa_ 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc-cccceeeeccccccccCHHHHhCCCccccc
Confidence 344444444444433 233455666666666666666663333333333 366666666666666666666666666666
Q ss_pred EcCCCcccccCchhhhcCCCCcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCC
Q 043978 526 DLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRN 604 (683)
Q Consensus 526 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n 604 (683)
+|++|++++..+++|..+++|++|++++|.+..... .++. ..++.+.+..+.+....| ..+..++.+|++.|
T Consensus 108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~~c~~p-----~~l~~~~l~~L~~n 180 (192)
T d1w8aa_ 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAP-----SKVRDVQIKDLPHS 180 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSS-----TTTTTSBGGGSCTT
T ss_pred ccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCeEeCCC-----hhhcCCEeeecCHh
Confidence 666666666656666666666666666666543211 1111 123334444444433222 23344455556666
Q ss_pred cCCC
Q 043978 605 EFKD 608 (683)
Q Consensus 605 ~~~~ 608 (683)
++.+
T Consensus 181 ~l~C 184 (192)
T d1w8aa_ 181 EFKC 184 (192)
T ss_dssp TCCC
T ss_pred hCcC
Confidence 6554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1.1e-17 Score=152.65 Aligned_cols=172 Identities=24% Similarity=0.229 Sum_probs=114.5
Q ss_pred EEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCC
Q 043978 451 VFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCN 530 (683)
Q Consensus 451 ~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 530 (683)
.++.++++++ .+|..+. +++++|+|++|+|++.++...+...++|+.|++++|++....+..|..+++|++|++++|
T Consensus 12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 3444444444 3444442 567888888888865454444433347888888888887777778888888888888888
Q ss_pred cccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCC
Q 043978 531 KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFL 610 (683)
Q Consensus 531 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 610 (683)
+++...+.+|.++++|++|+|++|.|+.+.+++|..+++|++|+|++|++...... ..-...++...+..+.+++..
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~---~~~~~~l~~~~l~~~~~~c~~ 165 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL---AWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG---HHHHHHHHHHCCSGGGCBBCS
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch---HHHhhhhhhhcccCCCeEeCC
Confidence 88877777788888888888888888777777777888888888888877543211 111123555666777776655
Q ss_pred cHHHHhcchhhcccccccceee
Q 043978 611 PRRNFTSMEAMKNVDEQATRLQ 632 (683)
Q Consensus 611 p~~~~~~~~~L~~l~l~~n~~~ 632 (683)
| ..+..++.++++.|.++
T Consensus 166 p----~~l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 166 P----SKVRDVQIKDLPHSEFK 183 (192)
T ss_dssp S----TTTTTSBGGGSCTTTCC
T ss_pred C----hhhcCCEeeecCHhhCc
Confidence 5 23455666677766654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.5e-16 Score=149.43 Aligned_cols=187 Identities=24% Similarity=0.353 Sum_probs=119.7
Q ss_pred CCCCCCEEeCCCCCccccccccccccccCCCCccEEEcccCCCCCcChhhhhccccccccCCCcccCCCcCcEEECCCCc
Q 043978 337 KLKNLQFLDLSNNNLLSFTSSGNIDIKYSLPSLLKLSFSNCNVSEFPSFLRNSEKIHGRISKHDSKGWKSLIDLDLSNNF 416 (683)
Q Consensus 337 ~l~~L~~L~l~~n~l~~l~~~~~~~~~~~~~~L~~L~l~~~~l~~~p~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 416 (683)
.+.+|+.|++.+|.++++ +.+..+++|++|++++|.+..++.. ..+++++.+++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~l------~~l~~l~~L~~L~ls~n~i~~~~~l----------------~~l~~l~~l~~~~n~ 96 (227)
T d1h6ua2 39 DLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAPL----------------KNLTKITELELSGNP 96 (227)
T ss_dssp HHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGGG----------------TTCCSCCEEECCSCC
T ss_pred HcCCcCEEECCCCCCCcc------hhHhcCCCCcEeecCCceeeccccc----------------ccccccccccccccc
Confidence 345566666666655444 1233566666666666665544332 556667777777666
Q ss_pred ccccC-CCCCCCceEEeCCCCCCCccCCCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhcc
Q 043978 417 LTHIA-LHPWKNIRTLDLRNNKIQGSILVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFT 495 (683)
Q Consensus 417 ~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~ 495 (683)
++.+. +..+++|+.++++++...+. ..+...+.++.+.++.+.+... ..+...
T Consensus 97 ~~~i~~l~~l~~L~~l~l~~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~~~~--~~~~~~- 150 (227)
T d1h6ua2 97 LKNVSAIAGLQSIKTLDLTSTQITDV-----------------------TPLAGLSNLQVLYLDLNQITNI--SPLAGL- 150 (227)
T ss_dssp CSCCGGGTTCTTCCEEECTTSCCCCC-----------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGC-
T ss_pred cccccccccccccccccccccccccc-----------------------chhccccchhhhhchhhhhchh--hhhccc-
Confidence 66543 33555566666655544321 2345566777777777776522 223333
Q ss_pred CcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEc
Q 043978 496 TQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILIL 575 (683)
Q Consensus 496 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 575 (683)
++|+.|++++|.+.+. ..+.++++|+.|++++|++++. + .++.+++|++|++++|++++..| ++++++|++|++
T Consensus 151 ~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~l 224 (227)
T d1h6ua2 151 TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224 (227)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEE
T ss_pred cccccccccccccccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEe
Confidence 3788888888877644 3377888888888888888753 3 37888889999999998886533 788889998888
Q ss_pred cC
Q 043978 576 RS 577 (683)
Q Consensus 576 ~~ 577 (683)
++
T Consensus 225 sn 226 (227)
T d1h6ua2 225 TN 226 (227)
T ss_dssp EE
T ss_pred eC
Confidence 63
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.2e-16 Score=150.19 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=144.7
Q ss_pred cEEECCCCcccccCCCCCCCceEEeCCCCCCCcc---CCCCCCCCcEEEccCCcccCC-CCccccCCCCCCEEEcCC-Cc
Q 043978 408 IDLDLSNNFLTHIALHPWKNIRTLDLRNNKIQGS---ILVPPPSTEVFLVSNNKLSGQ-IPPYICSLSSLKYLSLSH-NN 482 (683)
Q Consensus 408 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~Ls~-n~ 482 (683)
+.++.++..++.++..-.+++++|++++|+++.. .+..+++|++|++++|.+... .+.+|.+++.++++.+.. |.
T Consensus 11 ~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~ 90 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90 (242)
T ss_dssp SEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred CEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence 5778888788877665556788888888888743 345677888888888877653 345677788888887754 45
Q ss_pred CCCCCChhhhhccCcccEEECCCCcccccccc-cccCCCCccEEEcCCCcccccCchhhhcCC-CCcEEEccCCcCCccC
Q 043978 483 LSGTIPPCLGNFTTQLITLHLKNNSLEGHIHD-TFENASNIQSFDLNCNKFEGSLPRSLAKCV-KLEVVNVGNNMINDTF 560 (683)
Q Consensus 483 i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~ 560 (683)
+....+..+..+ ++|+.+++++|++....+. .+..++.+..+..+++.+....+..|..++ .++.|++++|+++...
T Consensus 91 l~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~ 169 (242)
T d1xwdc1 91 LLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 169 (242)
T ss_dssp CCEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccccccccc-ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 553333333333 4888888888877654332 334456666667777777766666676654 6788888888887554
Q ss_pred CccccCCCCCCEE-EccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcHHHHhcchhhccccccc
Q 043978 561 PCWLGSLPLLKIL-ILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPRRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 561 ~~~l~~l~~L~~L-~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l~l~~ 628 (683)
+..+ ..++++.+ ++++|++....+ ..+..+++|++||+++|+++ .+|...|.+++.|+.+++.+
T Consensus 170 ~~~~-~~~~l~~~~~l~~n~l~~l~~--~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 170 NCAF-NGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp TTTT-TTCCEEEEECTTCTTCCCCCT--TTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSEES
T ss_pred cccc-cchhhhccccccccccccccH--HHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcCCC
Confidence 4444 34555444 566666664322 33566788888888888887 46667788888887777643
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=5.1e-16 Score=147.58 Aligned_cols=195 Identities=14% Similarity=0.099 Sum_probs=123.9
Q ss_pred cCcEEECCCCcccccCC---CCCCCceEEeCCCCCCCcc----CCCCCCCCcEEEccC-CcccCCCCccccCCCCCCEEE
Q 043978 406 SLIDLDLSNNFLTHIAL---HPWKNIRTLDLRNNKIQGS----ILVPPPSTEVFLVSN-NKLSGQIPPYICSLSSLKYLS 477 (683)
Q Consensus 406 ~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~l~~~----~~~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~ 477 (683)
++++|++++|.++.++. ..+++|++|++++|.+.+. .+..++.++++.+.. +.+....+..|.++++|++++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 45555555555544422 2445555555555554432 123456666666553 456666677788888899999
Q ss_pred cCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCC-CccEEEcCCCcccccCchhhhcCCCCcEE-EccCCc
Q 043978 478 LSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENAS-NIQSFDLNCNKFEGSLPRSLAKCVKLEVV-NVGNNM 555 (683)
Q Consensus 478 Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L-~l~~n~ 555 (683)
+++|.+....+.........+..+...++.+....+..|.+++ .++.|++++|+++...+..|. .++++++ ++++|.
T Consensus 110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~ 188 (242)
T d1xwdc1 110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNN 188 (242)
T ss_dssp EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTT
T ss_pred cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccc
Confidence 9888886332323333333566666677788777777777764 788889988888865555444 4555444 567778
Q ss_pred CCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCC
Q 043978 556 INDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSR 603 (683)
Q Consensus 556 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~ 603 (683)
++...+..|.++++|++|++++|+++...+ ..+..+++|+++++.+
T Consensus 189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 189 LEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYN 234 (242)
T ss_dssp CCCCCTTTTTTSCCCSEEECTTSCCCCCCS--SSCTTCCEEESSSEES
T ss_pred cccccHHHhcCCCCCCEEECCCCcCCccCH--HHHcCCcccccCcCCC
Confidence 876555668888999999999998874422 3455666666665543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.1e-15 Score=141.32 Aligned_cols=101 Identities=31% Similarity=0.367 Sum_probs=44.8
Q ss_pred ccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCC
Q 043978 467 ICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKL 546 (683)
Q Consensus 467 l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 546 (683)
+..+++|+.|++++|.+. .++ .+.... .++.+++++|.+++. ..+..+++|+.+++++|++++. + .+.++++|
T Consensus 108 l~~l~~L~~L~l~~~~~~-~~~-~l~~l~-~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L 180 (210)
T d1h6ta2 108 LKDLKKLKSLSLEHNGIS-DIN-GLVHLP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKL 180 (210)
T ss_dssp GTTCTTCCEEECTTSCCC-CCG-GGGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTC
T ss_pred cccccccccccccccccc-ccc-cccccc-ccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCC
Confidence 444455555555555443 222 222222 445555555544422 2233444555555555554432 1 24445555
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEcc
Q 043978 547 EVVNVGNNMINDTFPCWLGSLPLLKILILR 576 (683)
Q Consensus 547 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 576 (683)
++|++++|.+++. + .+.++++|++|+|+
T Consensus 181 ~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 181 QNLYLSKNHISDL-R-ALAGLKNLDVLELF 208 (210)
T ss_dssp CEEECCSSCCCBC-G-GGTTCTTCSEEEEE
T ss_pred CEEECCCCCCCCC-h-hhcCCCCCCEEEcc
Confidence 5555555554432 2 24445555555443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.6e-15 Score=140.07 Aligned_cols=163 Identities=24% Similarity=0.336 Sum_probs=121.4
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEc
Q 043978 448 STEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL 527 (683)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 527 (683)
++++|++++|.+... ..+..+++|++|++++|+++ .++. +..+ ++|+.|++++|++++.. .+..+++|+.|++
T Consensus 47 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~-~~~l-~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l 119 (210)
T d1h6ta2 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LANL-KNLGWLFLDENKVKDLS--SLKDLKKLKSLSL 119 (210)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTC-TTCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred CccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc-cccC-ccccccccccccccccc--ccccccccccccc
Confidence 334444444444432 24677888999999999887 3443 4444 48999999999887642 5788889999999
Q ss_pred CCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 528 NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 528 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|.+.. ...+..+++|+.+++++|.+++. ..+..+++|+++++++|++.+.. .+..+++|++|++++|+++
T Consensus 120 ~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~----~l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 120 EHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp TTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCC
T ss_pred ccccccc--ccccccccccccccccccccccc--ccccccccccccccccccccccc----cccCCCCCCEEECCCCCCC
Confidence 9998863 24588888999999999988753 45678899999999999887532 3567889999999999998
Q ss_pred CCCcHHHHhcchhhccccccc
Q 043978 608 DFLPRRNFTSMEAMKNVDEQA 628 (683)
Q Consensus 608 ~~~p~~~~~~~~~L~~l~l~~ 628 (683)
+ +| .|.++++|+.|++++
T Consensus 192 ~-l~--~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 D-LR--ALAGLKNLDVLELFS 209 (210)
T ss_dssp B-CG--GGTTCTTCSEEEEEE
T ss_pred C-Ch--hhcCCCCCCEEEccC
Confidence 4 56 488888999888764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=1.8e-15 Score=138.45 Aligned_cols=159 Identities=21% Similarity=0.330 Sum_probs=113.1
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEc
Q 043978 448 STEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDL 527 (683)
Q Consensus 448 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 527 (683)
++++|++++|.+... +.++.+++|++|++++|++++ +++ +..+. +|++|++++|.+.... .+.+++.|+.|++
T Consensus 41 ~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~-~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l 113 (199)
T d2omxa2 41 QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-ITP-LKNLT-KLVDILMNNNQIADIT--PLANLTNLTGLTL 113 (199)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-GTTCT-TCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred CCCEEECCCCCCCCc--cccccCCCcCcCccccccccC-ccc-ccCCc-cccccccccccccccc--ccccccccccccc
Confidence 333444444444422 346778888888888888873 443 55544 8888888888876543 4778888888888
Q ss_pred CCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCC
Q 043978 528 NCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFK 607 (683)
Q Consensus 528 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~ 607 (683)
++|..... ..+..+++|+.|++++|.+.. + ..+..+++|+.|++++|++++.. .+..+++|++|++++|+++
T Consensus 114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~----~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK----PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCC
T ss_pred cccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc----cccCCCCCCEEECCCCCCC
Confidence 88887643 347788889999999888864 2 35778888999999988887542 3567888999999999888
Q ss_pred CCCcHHHHhcchhhccc
Q 043978 608 DFLPRRNFTSMEAMKNV 624 (683)
Q Consensus 608 ~~~p~~~~~~~~~L~~l 624 (683)
+ +| .|+.+++|+.|
T Consensus 186 ~-i~--~l~~L~~L~~L 199 (199)
T d2omxa2 186 D-IS--VLAKLTNLESL 199 (199)
T ss_dssp C-CG--GGGGCTTCSEE
T ss_pred C-Cc--cccCCCCCCcC
Confidence 5 44 36677776653
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=1.8e-15 Score=138.41 Aligned_cols=159 Identities=23% Similarity=0.278 Sum_probs=110.7
Q ss_pred CCceEEeCCCCCCCccC-CCCCCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECC
Q 043978 426 KNIRTLDLRNNKIQGSI-LVPPPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLK 504 (683)
Q Consensus 426 ~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~ 504 (683)
+++++|++++|.++... ...+++|++|++++|++++.. .+.++++|++|++++|.+. .++ .+..+ +.|+.|+++
T Consensus 40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~-~~~-~l~~l-~~L~~L~l~ 114 (199)
T d2omxa2 40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA-DIT-PLANL-TNLTGLTLF 114 (199)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCG-GGTTC-TTCSEEECC
T ss_pred cCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--cccCCcccccccccccccc-ccc-ccccc-ccccccccc
Confidence 34444444444443311 123556666666666666432 3788888999999988886 454 35544 488999998
Q ss_pred CCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccC
Q 043978 505 NNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPL 584 (683)
Q Consensus 505 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 584 (683)
+|.+... ..+..+++|+.|++++|++.. . ..+..+++|++|++++|.+++.. .++++++|++|++++|+++..
T Consensus 115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i- 187 (199)
T d2omxa2 115 NNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI- 187 (199)
T ss_dssp SSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred ccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC-
Confidence 8887654 347788899999999998863 3 35888889999999999887643 378889999999999988653
Q ss_pred CCCccccCCCCCcEE
Q 043978 585 CKSITTFSFQALRII 599 (683)
Q Consensus 585 ~~~~~~~~l~~L~~L 599 (683)
+ .+..+++|++|
T Consensus 188 ~---~l~~L~~L~~L 199 (199)
T d2omxa2 188 S---VLAKLTNLESL 199 (199)
T ss_dssp G---GGGGCTTCSEE
T ss_pred c---cccCCCCCCcC
Confidence 2 34667777765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.9e-15 Score=128.08 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=86.4
Q ss_pred cccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCC
Q 043978 466 YICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVK 545 (683)
Q Consensus 466 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 545 (683)
.+.+...+++|+|++|+|+ .++..+..+ ++|+.|++++|+|+.. +.|..+++|++|++++|+++...+..+..+++
T Consensus 13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l-~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~ 88 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP-VIENLGATL-DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 88 (162)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGT-TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hccCcCcCcEEECCCCCCC-ccCcccccc-ccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence 3556677888888888887 566433333 4788888888888755 34777788888888888887666666677888
Q ss_pred CcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCcccCC-CCccccCCCCCcEEe
Q 043978 546 LEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGPLC-KSITTFSFQALRIID 600 (683)
Q Consensus 546 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~~L~~L~ 600 (683)
|++|++++|.+.+... ..+..+++|++|++++|++..... ....+..+|+|++||
T Consensus 89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 8888888888765321 346667777777777777643210 001233455555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=8.9e-16 Score=149.03 Aligned_cols=180 Identities=18% Similarity=0.151 Sum_probs=77.9
Q ss_pred CCCCEEeCCCCcCccccCCHHHHHccCCCCCEEEcCCccCCcCChhhhhcCcCCccEEEcCCC-cCCCCC-CccCCCCCC
Q 043978 84 SKLTHLGLSCRVLTIEQRTFDLLASNLTKLSLLHLGSTNLSLIKPFSLLNLSSTMTDLDLSGT-RIQGNF-PDQIFLLPN 161 (683)
Q Consensus 84 ~~L~~L~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~l~~n-~i~~~~-~~~l~~l~~ 161 (683)
.+|++||++++.+. ...+...+..+++|++|+++++.+++..+..++++ ++|++|++++| .+++.. ......+++
T Consensus 46 ~~L~~LdLs~~~i~--~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~Ls~c~~itd~~l~~l~~~~~~ 122 (284)
T d2astb2 46 FRVQHMDLSNSVIE--VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSR 122 (284)
T ss_dssp BCCCEEECTTCEEC--HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCEEECCCCccC--HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcC-CCCcCccccccccccccccchhhHHHHh
Confidence 34444554444332 12233334455555555555554444444444444 45555555553 222110 011123455
Q ss_pred CcEEEccCCCCCccc-CC-CC-CCCCCCCEEECCCCc--Ccc-ccCccccCCCCCCEEEccCCc-ccccCCCCCCCCCCC
Q 043978 162 LRVLYLCGNIHLTGY-LP-KC-NWSSPLRELDLSLSD--FSG-EIPYSIGNLLFLETVDITYCN-FMGSIPTSTGNLSKA 234 (683)
Q Consensus 162 L~~L~l~~n~~~~~~-~~-~~-~~~~~L~~L~L~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L 234 (683)
|++|++++|..+++. .. .+ ..+++|+.|+++++. ++. .+...+.++++|++|++++|. +++.....+..+++|
T Consensus 123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L 202 (284)
T d2astb2 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202 (284)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence 555555554222211 00 11 112445555555432 221 122223455666666666543 343344444455555
Q ss_pred CeeeccCc-cccccCCccccCCCCCCEEEccCC
Q 043978 235 TEILFASN-HLTGQLPHHVSGLLYLTNLDLFGN 266 (683)
Q Consensus 235 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n 266 (683)
++|++++| .+++.....++++++|++|+++++
T Consensus 203 ~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 55555553 333333334455555555555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.3e-15 Score=147.79 Aligned_cols=252 Identities=17% Similarity=0.116 Sum_probs=148.0
Q ss_pred EEECCCCCCCcceeecCCCcccccccCCeeeCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC-CCccCcCCCCCCEE
Q 043978 11 GLDLHGSCSWLRGTIDDNSTLFRLSHLQSLNLAFNNFLGSRISPEFGRLKELTYLNPSFSNFGGL-VPSEISHLSKLTHL 89 (683)
Q Consensus 11 ~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~-~~~~~~~l~~L~~L 89 (683)
.|||++ ..+..+... .+.. ..+..+.++....... ........+|++||++++.+... +...+.++++|++|
T Consensus 4 ~lDLs~--~~l~~~~l~--~l~~-~~~~~lrl~~~~~~~~--~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L 76 (284)
T d2astb2 4 TLDLTG--KNLHPDVTG--RLLS-QGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76 (284)
T ss_dssp EEECTT--CBCCHHHHH--HHHH-TTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred EEECCC--CCCCchHHH--HHHh-ccceEeeccccccccc--hhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence 678887 555432211 1111 2344555554443221 11233445788888887776544 34456778888888
Q ss_pred eCCCCcCccccCCHHHHHccCCCCCEEEcCCc-cCCcCChhhh-hcCcCCccEEEcCCCc-CCCC-CCccCC-CCCCCcE
Q 043978 90 GLSCRVLTIEQRTFDLLASNLTKLSLLHLGST-NLSLIKPFSL-LNLSSTMTDLDLSGTR-IQGN-FPDQIF-LLPNLRV 164 (683)
Q Consensus 90 ~ls~n~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~~L~~L~l~~n~-i~~~-~~~~l~-~l~~L~~ 164 (683)
+++++.+. ...+..+.++++|++|+++++ .+++.....+ ..+ ++|++|++++|. +++. ....+. ..++|+.
T Consensus 77 ~L~~~~l~---~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~-~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~ 152 (284)
T d2astb2 77 SLEGLRLS---DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 152 (284)
T ss_dssp ECTTCBCC---HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred cccccCCC---cHHHHHHhcCCCCcCccccccccccccccchhhHHH-Hhccccccccccccccccchhhhcccccccch
Confidence 88887654 344555677788888888875 4443322233 345 788888888763 3321 111222 3467888
Q ss_pred EEccCCC-CCcc-cCC-CCCCCCCCCEEECCCCc-CccccCccccCCCCCCEEEccCC-cccccCCCCCCCCCCCCeeec
Q 043978 165 LYLCGNI-HLTG-YLP-KCNWSSPLRELDLSLSD-FSGEIPYSIGNLLFLETVDITYC-NFMGSIPTSTGNLSKATEILF 239 (683)
Q Consensus 165 L~l~~n~-~~~~-~~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l 239 (683)
|+++++. .++. .+. ....+++|++|++++|. +++.....+.++++|++|++++| .+++.....++++++|+.|++
T Consensus 153 L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l 232 (284)
T d2astb2 153 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232 (284)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred hhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEee
Confidence 8887652 1211 111 23456788888888764 66666677888888999999886 466555566778889999998
Q ss_pred cCccccccCCcc-ccCCCCCCEEEccCCcCcccCCcccc
Q 043978 240 ASNHLTGQLPHH-VSGLLYLTNLDLFGNSLQGKVPSWLF 277 (683)
Q Consensus 240 ~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~ 277 (683)
+++ +.+..... ...+++|+ +..+.+++..+..++
T Consensus 233 ~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~ 267 (284)
T d2astb2 233 FGI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG 267 (284)
T ss_dssp TTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCS
T ss_pred eCC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccC
Confidence 887 33222222 23455554 456666655444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=6.7e-14 Score=116.17 Aligned_cols=118 Identities=24% Similarity=0.326 Sum_probs=57.0
Q ss_pred EEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCc
Q 043978 500 TLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNR 579 (683)
Q Consensus 500 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 579 (683)
.|++++|+++.. ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. | .+..+++|++|++++|+
T Consensus 2 ~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCSSC--CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCCCC--cccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence 445555555432 12445555555555555554 3344455555555555555555432 2 25555555555555555
Q ss_pred CcccCCCCccccCCCCCcEEeCCCCcCCCC--CcHHHHhcchhhcc
Q 043978 580 FYGPLCKSITTFSFQALRIIDLSRNEFKDF--LPRRNFTSMEAMKN 623 (683)
Q Consensus 580 l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~--~p~~~~~~~~~L~~ 623 (683)
+..... ...+..+++|++|++++|++++. .+...+..+++|+.
T Consensus 77 i~~~~~-~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~ 121 (124)
T d1dcea3 77 LQQSAA-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 121 (124)
T ss_dssp CCSSST-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred cCCCCC-chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcce
Confidence 543221 12334455555555555555421 22334444444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3e-14 Score=124.66 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=90.2
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEE
Q 043978 447 PSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFD 526 (683)
Q Consensus 447 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 526 (683)
.++++|++++|+|+ .++..+..+++|+.|++++|.+. .++ .+..+ ++|++|++++|+++...+..+..+++|+.|+
T Consensus 18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l-~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLL-RRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCC-SSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccC-cchhhhhcccccccCCCccccccccccccce
Confidence 34455555555555 34556677888888888888887 554 34444 4888899999988877777777888899999
Q ss_pred cCCCcccccCc-hhhhcCCCCcEEEccCCcCCccC---CccccCCCCCCEEE
Q 043978 527 LNCNKFEGSLP-RSLAKCVKLEVVNVGNNMINDTF---PCWLGSLPLLKILI 574 (683)
Q Consensus 527 L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~ 574 (683)
+++|+++.... ..+..+++|++|++++|+++... +..+..+|+|++||
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 99998875422 46788889999999999887532 12467788998886
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=1.7e-13 Score=113.72 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=38.4
Q ss_pred cccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCcEEEccCCcCCccC-CccccCCCCCCEEEc
Q 043978 497 QLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLEVVNVGNNMINDTF-PCWLGSLPLLKILIL 575 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l 575 (683)
+|++|++++|++++. |..|..+++|+.|++++|++++ .| .+..+++|++|++++|++.+.. ...+..+++|+.|++
T Consensus 21 ~L~~L~ls~N~l~~l-p~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l 97 (124)
T d1dcea3 21 LVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 97 (124)
T ss_dssp TCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCcc-hhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence 444444444444422 2334444555555555555542 22 2455555555555555554322 123445555555555
Q ss_pred cCCcCc
Q 043978 576 RSNRFY 581 (683)
Q Consensus 576 ~~n~l~ 581 (683)
++|++.
T Consensus 98 ~~N~i~ 103 (124)
T d1dcea3 98 QGNSLC 103 (124)
T ss_dssp TTSGGG
T ss_pred CCCcCC
Confidence 555554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.43 E-value=9.8e-15 Score=146.43 Aligned_cols=140 Identities=15% Similarity=0.196 Sum_probs=95.2
Q ss_pred cCCCCCCEEEcCCCcCCCCC----ChhhhhccCcccEEECCCCccccc-----ccccccCCCCccEEEcCCCccccc---
Q 043978 468 CSLSSLKYLSLSHNNLSGTI----PPCLGNFTTQLITLHLKNNSLEGH-----IHDTFENASNIQSFDLNCNKFEGS--- 535 (683)
Q Consensus 468 ~~l~~L~~L~Ls~n~i~~~~----~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~--- 535 (683)
...+.|+.+++++|.+.... ...+... +.|+.|++++|+++.. ....+..+++|+.|++++|+++..
T Consensus 155 ~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~ 233 (344)
T d2ca6a1 155 KNAPPLRSIICGRNRLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233 (344)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred ccCcccceeecccccccccccccccchhhhh-hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc
Confidence 34567888888888775321 1223333 3788888888887643 334567788899999999988643
Q ss_pred -CchhhhcCCCCcEEEccCCcCCccCCcc----cc--CCCCCCEEEccCCcCcccCCCC--ccc-cCCCCCcEEeCCCCc
Q 043978 536 -LPRSLAKCVKLEVVNVGNNMINDTFPCW----LG--SLPLLKILILRSNRFYGPLCKS--ITT-FSFQALRIIDLSRNE 605 (683)
Q Consensus 536 -~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~--~l~~L~~L~l~~n~l~~~~~~~--~~~-~~l~~L~~L~ls~n~ 605 (683)
+...+..+++|++|++++|.+.+..... +. ..+.|++|++++|++...-... ... ...+.|+.|++++|+
T Consensus 234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~ 313 (344)
T d2ca6a1 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313 (344)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence 3356778899999999999987653332 32 3467999999999875321100 111 246789999999999
Q ss_pred CCC
Q 043978 606 FKD 608 (683)
Q Consensus 606 ~~~ 608 (683)
+..
T Consensus 314 ~~~ 316 (344)
T d2ca6a1 314 FSE 316 (344)
T ss_dssp SCT
T ss_pred CCC
Confidence 974
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.41 E-value=2.5e-14 Score=143.35 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=43.6
Q ss_pred cccccccCCeeeCCCCCCCCCC---CCcccCCCCCCCEEeCCCCCCCCC----------CCccCcCCCCCCEEeCCCCcC
Q 043978 30 TLFRLSHLQSLNLAFNNFLGSR---ISPEFGRLKELTYLNPSFSNFGGL----------VPSEISHLSKLTHLGLSCRVL 96 (683)
Q Consensus 30 ~l~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~----------~~~~~~~l~~L~~L~ls~n~~ 96 (683)
++.....|+.|+|++|.+.... +...+...++|+.++++++..... +...+..+++|++|++++|.+
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 3445666666776666553220 122345556666666665543221 112233445555555555544
Q ss_pred cccc-CCHHHHHccCCCCCEEEcCCccC
Q 043978 97 TIEQ-RTFDLLASNLTKLSLLHLGSTNL 123 (683)
Q Consensus 97 ~~~~-~~~~~~~~~l~~L~~L~L~~n~l 123 (683)
.... ..+...+..+++|++|++++|.+
T Consensus 106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l 133 (344)
T d2ca6a1 106 GPTAQEPLIDFLSKHTPLEHLYLHNNGL 133 (344)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred ccccccchhhhhcccccchheecccccc
Confidence 3110 11233334445555555555444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.5e-11 Score=106.33 Aligned_cols=106 Identities=18% Similarity=0.054 Sum_probs=53.1
Q ss_pred ccCCCCccEEEcCCC-cccccCchhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCCccccCCC
Q 043978 516 FENASNIQSFDLNCN-KFEGSLPRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQ 594 (683)
Q Consensus 516 ~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 594 (683)
+.++++|++|++++| .++...+.+|.++++|+.|++++|+|+.+.+.+|..+++|++|+|++|++....+. .....
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~---~~~~~ 103 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK---TVQGL 103 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST---TTCSC
T ss_pred ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChh---hhccc
Confidence 444455555555433 24444445555555555555555555555555555555555555555555432221 12223
Q ss_pred CCcEEeCCCCcCCCCCcHHHHhcchhhccc
Q 043978 595 ALRIIDLSRNEFKDFLPRRNFTSMEAMKNV 624 (683)
Q Consensus 595 ~L~~L~ls~n~~~~~~p~~~~~~~~~L~~l 624 (683)
.|+.|+|++|++.+...-.+|..+......
T Consensus 104 ~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~ 133 (156)
T d2ifga3 104 SLQELVLSGNPLHCSCALRWLQRWEEEGLG 133 (156)
T ss_dssp CCCEEECCSSCCCCCGGGHHHHHHHHTTCS
T ss_pred cccccccCCCcccCCchHHHHHHHHHhccC
Confidence 466666666666544443444444333333
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.27 E-value=9.3e-14 Score=126.08 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=76.9
Q ss_pred CCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEEEcCCCcccccCchhhhc
Q 043978 463 IPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAK 542 (683)
Q Consensus 463 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 542 (683)
++..+..+++|++|++++|.|. .++ .+..+. +|+.|++++|+++.. +..+..+++|+.|++++|+++.. ..+..
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~-~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l~~N~i~~l--~~~~~ 113 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGME-NLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEK 113 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHT-TCCEEECCEEEECSC-SSHHHHHHHCCEEECSEEECCCH--HHHHH
T ss_pred hhhHHhcccccceeECcccCCC-Ccc-cccCCc-cccChhhcccccccc-ccccccccccccccccccccccc--ccccc
Confidence 3455677777788888877776 454 355544 777788877777643 33344445677788887777643 34677
Q ss_pred CCCCcEEEccCCcCCccCC-ccccCCCCCCEEEccCCcCccc
Q 043978 543 CVKLEVVNVGNNMINDTFP-CWLGSLPLLKILILRSNRFYGP 583 (683)
Q Consensus 543 l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 583 (683)
+++|++|++++|++++... ..+..+++|+.|++++|++...
T Consensus 114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 155 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred cccccccccccchhccccccccccCCCccceeecCCCccccC
Confidence 7778888888887765322 3567777888888888876543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.2e-11 Score=107.10 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=88.6
Q ss_pred CCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCC-cccccccccccCCCCccEEEcCCCcccccCchhhhcCCCCc
Q 043978 469 SLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNN-SLEGHIHDTFENASNIQSFDLNCNKFEGSLPRSLAKCVKLE 547 (683)
Q Consensus 469 ~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 547 (683)
.+...+.++.+++.+. ..|..+.... +|++|++++| .++.+.+.+|.++++|+.|++++|+++.+.+.+|..+++|+
T Consensus 6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~ 83 (156)
T d2ifga3 6 CPHGSSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (156)
T ss_dssp CCSSSSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CcCCCCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence 3445566788888777 5676666554 8899999766 48888888899999999999999999988888899999999
Q ss_pred EEEccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 043978 548 VVNVGNNMINDTFPCWLGSLPLLKILILRSNRFY 581 (683)
Q Consensus 548 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 581 (683)
+|+|++|+++...+..|..+ +|+.|+|++|++.
T Consensus 84 ~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~ 116 (156)
T d2ifga3 84 RLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116 (156)
T ss_dssp EEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred ceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence 99999999986666666544 6999999999874
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.19 E-value=4.4e-13 Score=121.53 Aligned_cols=123 Identities=22% Similarity=0.234 Sum_probs=92.2
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCEEEcCCCcCCCCCChhhhhccCcccEEECCCCcccccccccccCCCCccEE
Q 043978 446 PPSTEVFLVSNNKLSGQIPPYICSLSSLKYLSLSHNNLSGTIPPCLGNFTTQLITLHLKNNSLEGHIHDTFENASNIQSF 525 (683)
Q Consensus 446 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 525 (683)
+++|++|++++|+|.. + +.+.++++|+.|++++|.++ .+|..... .++|+.|++++|+++.. ..+..+++|+.|
T Consensus 47 L~~L~~L~Ls~n~I~~-i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L 120 (198)
T d1m9la_ 47 LKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIASL--SGIEKLVNLRVL 120 (198)
T ss_dssp TTTCCEEECSEEEESC-C-CCHHHHTTCCEEECCEEEEC-SCSSHHHH-HHHCCEEECSEEECCCH--HHHHHHHHSSEE
T ss_pred ccccceeECcccCCCC-c-ccccCCccccChhhcccccc-cccccccc-ccccccccccccccccc--cccccccccccc
Confidence 4556666666666664 3 35888999999999999998 67754443 34899999999999865 347788999999
Q ss_pred EcCCCcccccCc-hhhhcCCCCcEEEccCCcCCccCCcc----------ccCCCCCCEEE
Q 043978 526 DLNCNKFEGSLP-RSLAKCVKLEVVNVGNNMINDTFPCW----------LGSLPLLKILI 574 (683)
Q Consensus 526 ~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~ 574 (683)
++++|+++.... ..+..+++|++|++++|++....+.. +..+|+|+.||
T Consensus 121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 999999985432 56889999999999999887543332 34566666654
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.1e-08 Score=88.77 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=34.8
Q ss_pred hcCCCCcEEEccCCcCCccC--CccccCCCCCCEEEccCCcCcccCCCCccccCCCCCcEEeCCCCcCCCCCcH------
Q 043978 541 AKCVKLEVVNVGNNMINDTF--PCWLGSLPLLKILILRSNRFYGPLCKSITTFSFQALRIIDLSRNEFKDFLPR------ 612 (683)
Q Consensus 541 ~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~------ 612 (683)
..+++|++|++++|+|++.. +..++.+++|+.|++++|.+....+ ........|+.+++++|++.+....
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~--l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~ 139 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG--HHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchh--hhhhhccccceeecCCCCcCcCcccchhHHH
Confidence 34444444444444444321 1223344445555555554442211 1112223455555555555433221
Q ss_pred HHHhcchhhcccc
Q 043978 613 RNFTSMEAMKNVD 625 (683)
Q Consensus 613 ~~~~~~~~L~~l~ 625 (683)
..+..+++|+.||
T Consensus 140 ~i~~~~P~L~~LD 152 (162)
T d1koha1 140 AIRERFPKLLRLD 152 (162)
T ss_dssp HHHTTSTTCCEET
T ss_pred HHHHHCCCCCEEC
Confidence 2244455555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.1e-08 Score=88.73 Aligned_cols=86 Identities=19% Similarity=0.130 Sum_probs=44.8
Q ss_pred cccCCCCccEEEcCCCcccccC--chhhhcCCCCcEEEccCCcCCccCCccccCCCCCCEEEccCCcCcccCCCC-----
Q 043978 515 TFENASNIQSFDLNCNKFEGSL--PRSLAKCVKLEVVNVGNNMINDTFPCWLGSLPLLKILILRSNRFYGPLCKS----- 587 (683)
Q Consensus 515 ~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----- 587 (683)
.+..+++|++|++++|+++... +..+..+++|+.|++++|.|++..+-.+.....|+.|++++|++.......
T Consensus 60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~ 139 (162)
T d1koha1 60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139 (162)
T ss_dssp HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence 3344556666666666665432 234555666666666666666433322333445666666666665332211
Q ss_pred ccccCCCCCcEEe
Q 043978 588 ITTFSFQALRIID 600 (683)
Q Consensus 588 ~~~~~l~~L~~L~ 600 (683)
.....+|+|+.||
T Consensus 140 ~i~~~~P~L~~LD 152 (162)
T d1koha1 140 AIRERFPKLLRLD 152 (162)
T ss_dssp HHHTTSTTCCEET
T ss_pred HHHHHCCCCCEEC
Confidence 1123466666665
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.85 E-value=4e-06 Score=72.39 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=49.7
Q ss_pred cccCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCccC----CccccCCCCCCEEEccCCcCcccCC-
Q 043978 515 TFENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDTF----PCWLGSLPLLKILILRSNRFYGPLC- 585 (683)
Q Consensus 515 ~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~- 585 (683)
++...+.|++|++++|.+... +...+...++|++|++++|.+.+.. ...+...++|+.|++++|.+...-.
T Consensus 39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~ 118 (167)
T d1pgva_ 39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 118 (167)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence 344555666666666665422 2234455666777777777666432 2234556667777777665432100
Q ss_pred ----CCccccCCCCCcEEeCCCCc
Q 043978 586 ----KSITTFSFQALRIIDLSRNE 605 (683)
Q Consensus 586 ----~~~~~~~l~~L~~L~ls~n~ 605 (683)
....+...++|+.|+++.+.
T Consensus 119 ~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 119 VEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCccEeeCcCCC
Confidence 01122335677778776654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.77 E-value=9.1e-06 Score=70.08 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=47.3
Q ss_pred cccEEECCCCccccc----ccccccCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCcc-------CC
Q 043978 497 QLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDT-------FP 561 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~-------~~ 561 (683)
+|++|++++|.+... ....+...+.|+.|++++|.+++. +..++...++|++|++++|.+... +.
T Consensus 45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~ 124 (167)
T d1pgva_ 45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124 (167)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence 566666666666532 223344456677777777766532 123455566677777777654432 23
Q ss_pred ccccCCCCCCEEEccCCc
Q 043978 562 CWLGSLPLLKILILRSNR 579 (683)
Q Consensus 562 ~~l~~l~~L~~L~l~~n~ 579 (683)
..+...++|+.|+++.+.
T Consensus 125 ~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 125 MAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHCSSCCEEECCCCC
T ss_pred HHHHhCCCccEeeCcCCC
Confidence 334456777777776654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.30 E-value=4.2e-05 Score=65.75 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=39.2
Q ss_pred ccCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEccCCcCCcc----CCccccCCCCCCEEEcc--CCcCcccCC
Q 043978 516 FENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNVGNNMINDT----FPCWLGSLPLLKILILR--SNRFYGPLC 585 (683)
Q Consensus 516 ~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~--~n~l~~~~~ 585 (683)
+...+.|++|++++|.++.. +...+...++++.+++++|.+.+. +...+...++|+.++|+ +|.+.....
T Consensus 42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~ 121 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 121 (166)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence 33445555555555554322 112334445555555555555432 11233445555544433 333321100
Q ss_pred --CCccccCCCCCcEEeCCCCc
Q 043978 586 --KSITTFSFQALRIIDLSRNE 605 (683)
Q Consensus 586 --~~~~~~~l~~L~~L~ls~n~ 605 (683)
....+...+.|+.|+++.+.
T Consensus 122 ~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 122 MEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCcCEEeCcCCC
Confidence 00112245566666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.07 E-value=0.00011 Score=62.89 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=45.5
Q ss_pred cccEEECCCCccccc----ccccccCCCCccEEEcCCCccccc----CchhhhcCCCCcEEEc--cCCcCCcc----CCc
Q 043978 497 QLITLHLKNNSLEGH----IHDTFENASNIQSFDLNCNKFEGS----LPRSLAKCVKLEVVNV--GNNMINDT----FPC 562 (683)
Q Consensus 497 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l--~~n~l~~~----~~~ 562 (683)
.|++|++++|.++.. +...+...++++.+++++|.+... +...+...++|+.++| ++|.+.+. +..
T Consensus 47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~ 126 (166)
T d1io0a_ 47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 126 (166)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH
Confidence 566666666655433 223344456666666666665432 2245556666766555 34555442 333
Q ss_pred cccCCCCCCEEEccCCc
Q 043978 563 WLGSLPLLKILILRSNR 579 (683)
Q Consensus 563 ~l~~l~~L~~L~l~~n~ 579 (683)
.+...++|+.|+++.+.
T Consensus 127 ~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 127 MLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHCSSCCEEECCCSS
T ss_pred HHHhCCCcCEEeCcCCC
Confidence 44466777777776654
|