Citrus Sinensis ID: 044025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MVIQQKNPKLPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHcHH
Coil and Loop (DISEMBL)
mviqqknpklplsklkentldsnIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAIssatyggshEHIQFLVSqgyikplcdllvcsdqRIVTVCLNgnrklgmdnRVNVYTQMINEcdgldkienl
Flexible Loop (DISEMBL)
mviqqknpklplsklkentLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVClngnrklgmdnrVNVYTQMinecdgldkienl
Low Complexity Region (SEG)
MVIQQKNPKLPLSKLKENTLDSNIVVCMYTVIvaniilllvhllqhaeleIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL
Disordered region (IsUnstruct)
*******************LDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGL******
Disordered Region (DISOPRED)
*************KLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL
Disordered Region (DISEMBL)
MVIQQKNPKLPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL
Disordered Region (DISPRO)
*VIQQKNPKLPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVIQQKNPKLPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
O22478	527	Importin subunit alpha OS	N/A	no	0.767	0.187	0.618	2e-29
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.767	0.185	0.594	4e-28
Q96321	532	Importin subunit alpha-1	no	no	0.790	0.191	0.548	3e-27
Q71VM4	526	Importin subunit alpha-1a	no	no	0.767	0.188	0.596	2e-26
O04294	531	Importin subunit alpha-2	no	no	0.767	0.186	0.536	3e-24
Q76P29	516	Importin subunit alpha-B	yes	no	0.767	0.191	0.523	5e-20
O35345	536	Importin subunit alpha-7	yes	no	0.775	0.186	0.5	3e-18
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.775	0.186	0.5	3e-18
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.775	0.186	0.5	4e-18
O60684	536	Importin subunit alpha-7	yes	no	0.775	0.186	0.5	4e-18

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/110 (61%), Positives = 80/110 (72%), Gaps = 11/110 (10%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI A II  LV+LLQ+AE EIK EA WAIS+AT GG+H+ I+FLVSQG IKPLCDLLVC 
Sbjct: 366 VIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCP 425

Query: 90  DQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D RIVTVCL G          ++ LG    VNVY Q+I+E +GL+KIENL
Sbjct: 426 DPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENL 475

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.
Solanum lycopersicum (taxid: 4081)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 79/111 (71%), Gaps = 12/111 (10%)

Query: 30  TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI ANII  LVHLLQ AE +IK EA WAIS+AT GG+H+ I++LV+QG IKPLCDLLVC
Sbjct: 370 AVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVC 429

Query: 89  SDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
            D RIVTVCL G           + LG  + VN Y QMI++ +GL+KIENL
Sbjct: 430 PDPRIVTVCLEGLENILKVGEAEKNLGAGD-VNSYAQMIDDAEGLEKIENL 479

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 79/113 (69%), Gaps = 11/113 (9%)

Query: 28  MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86
           + TV+ AN+I  LV LLQ+AE +IK EA WAIS+AT GGSH+ I++LV QG IKPLCDLL
Sbjct: 362 IQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLL 421

Query: 87  VCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           VC D RI+TVCL G           + LG    +N Y Q+I++ +GL+KIENL
Sbjct: 422 VCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENL 474

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  117 bits (293), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/109 (59%), Positives = 81/109 (74%), Gaps = 10/109 (9%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI A II  LV+LLQ AE +IK EA WAIS+AT GGSH+ I++LVS+G IKPLCDLL+C 
Sbjct: 365 VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP 424

Query: 90  DQRIVTVCLNGNR---KLGMDNR------VNVYTQMINECDGLDKIENL 129
           D RIVTVCL G     K+G  ++      VNV++QMI+E +GL+KIENL
Sbjct: 425 DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 473

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  110 bits (274), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 73/110 (66%), Gaps = 11/110 (10%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI A II  LV +LQ AE E+K EA W IS+AT GG+H+ I+F+VSQG IKPLCDLL C 
Sbjct: 368 VIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCP 427

Query: 90  DQRIVTVCL----------NGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D ++VTVCL             + LG     N+Y QMI+E +GL+KIENL
Sbjct: 428 DLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENL 477

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 68/107 (63%), Gaps = 8/107 (7%)

Query: 31  VIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI ANII  LV+LL +AE EI KEA WAIS+AT  G+ + I FLVSQG +KPLCDLL  S
Sbjct: 361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query: 90  DQRIVTVCLNG-------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D RI+ V L G        +K      VN Y ++I + DGL KI +L
Sbjct: 421 DPRIINVALEGIENILVAGKKEAQVTGVNPYKKIIEDADGLGKIYDL 467

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 66/110 (60%), Gaps = 10/110 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI ANI  +L+ +LQ AE    KEA WAI++AT GG+ E I++LVS G IKPLCDLL  
Sbjct: 373 AVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTV 432

Query: 89  SDQRIVTVCLNGNR---KLGMDNR------VNVYTQMINECDGLDKIENL 129
            D +IV V LNG     +LG          VN Y  +I E  GLDKIE L
Sbjct: 433 MDSKIVQVALNGLENILRLGEQESKRSGSGVNPYCGLIEEAYGLDKIEFL 482

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 67/110 (60%), Gaps = 10/110 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI ANI  +L+ +LQ AE    KEA WAI++AT GG+ E I++LVS G IKPLCDLL  
Sbjct: 373 AVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTV 432

Query: 89  SDQRIVTVCLNGNR---KLG------MDNRVNVYTQMINECDGLDKIENL 129
            D +IV V LNG     +LG        + VN Y  +I E  GLDKIE L
Sbjct: 433 MDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFL 482

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 67/110 (60%), Gaps = 10/110 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI ANI  +L+ +LQ AE    KEA WAI++AT GG+ E I++LVS G IKPLCDLL  
Sbjct: 373 AVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTV 432

Query: 89  SDQRIVTVCLNGNR---KLG------MDNRVNVYTQMINECDGLDKIENL 129
            D +IV V LNG     +LG        + VN Y  +I E  GLDKIE L
Sbjct: 433 MDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFL 482

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 67/110 (60%), Gaps = 10/110 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI ANI  +L+ +LQ AE    KEA WAI++AT GG+ E I++LVS G IKPLCDLL  
Sbjct: 373 AVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTV 432

Query: 89  SDQRIVTVCLNGNR---KLG------MDNRVNVYTQMINECDGLDKIENL 129
            D +IV V LNG     +LG        + VN Y  +I E  GLDKIE L
Sbjct: 433 MDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFL 482

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
256016311	535	importin alpha [Citrus sinensis]	0.790	0.190	0.690	2e-35
255542930	450	importin alpha, putative [Ricinus commun	0.775	0.222	0.675	1e-33
224125002	537	predicted protein [Populus trichocarpa]	0.837	0.201	0.617	4e-32
449453998	537	PREDICTED: importin subunit alpha-1-like	0.790	0.189	0.628	8e-32
225450549	535	PREDICTED: importin subunit alpha-1 [Vit	0.775	0.186	0.630	2e-30
147818271	523	hypothetical protein VITISV_026717 [Viti	0.775	0.191	0.630	2e-30
13752560	535	importin alpha 1 [Capsicum annuum]	0.790	0.190	0.610	4e-30
297843718	538	hypothetical protein ARALYDRAFT_888168 [	0.806	0.193	0.591	5e-30
15217478	538	importin alpha isoform 4 [Arabidopsis th	0.775	0.185	0.603	1e-29
2959322	528	Importin alpha-like protein [Arabidopsis	0.775	0.189	0.603	2e-29

>gi|256016311|gb|ACU56981.1| importin alpha [Citrus sinensis]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 88/113 (77%), Gaps = 11/113 (9%)

Query: 28  MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86
           +  VI ANIIL LVHLLQHAE EIK EA WAIS+AT GGSH+ IQFLVSQG IKPLCDLL
Sbjct: 364 IQAVIEANIILPLVHLLQHAEFEIKKEAAWAISNATSGGSHQQIQFLVSQGCIKPLCDLL 423

Query: 87  VCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           VC D RIVTVCL G          ++++GM+N +NVY QMI+ECDGLDKIENL
Sbjct: 424 VCPDPRIVTVCLEGLENILKVGEADKEMGMNNGINVYAQMIDECDGLDKIENL 476

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542930|ref|XP_002512528.1| importin alpha, putative [Ricinus communis] gi|223548489|gb|EEF49980.1| importin alpha, putative [Ricinus communis]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 85/111 (76%), Gaps = 11/111 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI ANIIL LVHLLQHAE +IK EA WAIS+AT GGSHE IQFLV+QG IKPLCDLL+C
Sbjct: 286 AVIEANIILPLVHLLQHAEFDIKKEAAWAISNATSGGSHEQIQFLVNQGCIKPLCDLLIC 345

Query: 89  SDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
            D RIVTVCL G           +++GM+  VN+Y QMI+ECDGLDKIENL
Sbjct: 346 PDPRIVTVCLEGLENILKVGEAKKEMGMNGGVNLYAQMIDECDGLDKIENL 396

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125002|ref|XP_002319478.1| predicted protein [Populus trichocarpa] gi|222857854|gb|EEE95401.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 89/123 (72%), Gaps = 15/123 (12%)

Query: 22  SNIVVCMYT----VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ 76
           SNI     T    VI ANIIL LV+LLQHAE +IK EA WAIS+AT  GSHE IQFLVSQ
Sbjct: 357 SNITAGNRTQIQAVIEANIILPLVNLLQHAEFDIKKEAAWAISNATSAGSHEQIQFLVSQ 416

Query: 77  GYIKPLCDLLVCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKI 126
           G IKPLCDLL+C D RIVTVCL G          ++++G++  VN+Y QM++ECDGLDKI
Sbjct: 417 GCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNGGVNLYAQMVDECDGLDKI 476

Query: 127 ENL 129
           ENL
Sbjct: 477 ENL 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453998|ref|XP_004144743.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449490806|ref|XP_004158712.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/113 (62%), Positives = 84/113 (74%), Gaps = 11/113 (9%)

Query: 28  MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86
           +  VI ANIIL LVHLLQHAE +IK EA WAIS+AT GGSH+ IQFLV+QG IKPLCDLL
Sbjct: 365 IQAVIEANIILPLVHLLQHAEFDIKKEAGWAISNATSGGSHQQIQFLVTQGCIKPLCDLL 424

Query: 87  VCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
            C D RIVTVCL G          ++ +GM+  +N+Y Q I+EC+GLDKIENL
Sbjct: 425 TCPDPRIVTVCLEGLDNILKVGEADKDMGMNGGINIYAQAIDECEGLDKIENL 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450549|ref|XP_002281670.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296089795|emb|CBI39614.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 82/111 (73%), Gaps = 11/111 (9%)

Query: 28  MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86
           +  VI ANIIL LV+LLQHAE +IK EA W IS+AT GGSHE IQFLVSQG IKPLCDLL
Sbjct: 366 IQAVIEANIILPLVNLLQHAEFDIKKEAAWGISNATSGGSHEQIQFLVSQGCIKPLCDLL 425

Query: 87  VCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIE 127
           +C D RIVTVCL G          +++ G +  +N+Y QMI+ECDGLDKIE
Sbjct: 426 MCPDPRIVTVCLEGLENILKVGEADKESGKNGGINLYAQMIDECDGLDKIE 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818271|emb|CAN64716.1| hypothetical protein VITISV_026717 [Vitis vinifera]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 82/111 (73%), Gaps = 11/111 (9%)

Query: 28  MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86
           +  VI ANIIL LV+LLQHAE +IK EA W IS+AT GGSHE IQFLVSQG IKPLCDLL
Sbjct: 354 IQAVIEANIILPLVNLLQHAEFDIKKEAAWGISNATSGGSHEQIQFLVSQGCIKPLCDLL 413

Query: 87  VCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIE 127
           +C D RIVTVCL G          +++ G +  +N+Y QMI+ECDGLDKIE
Sbjct: 414 MCPDPRIVTVCLEGLENILKVGEADKESGKNGGINLYAQMIDECDGLDKIE 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13752560|gb|AAK38726.1|AF369706_1 importin alpha 1 [Capsicum annuum]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 84/113 (74%), Gaps = 11/113 (9%)

Query: 28  MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL 86
           +  VI ANIIL LVHLLQ+AE +IK EA WAIS+AT GGS+E I+FL SQG IKPLCDLL
Sbjct: 366 IQAVIEANIILPLVHLLQNAEFDIKKEAAWAISNATSGGSNEQIRFLASQGCIKPLCDLL 425

Query: 87  VCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           +C D RIVTVCL G          +++ G +  +N+Y QMI+EC+GLDKIENL
Sbjct: 426 ICPDPRIVTVCLEGLENILKVGEMDKETGANGGINLYAQMIDECEGLDKIENL 478

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843718|ref|XP_002889740.1| hypothetical protein ARALYDRAFT_888168 [Arabidopsis lyrata subsp. lyrata] gi|297335582|gb|EFH65999.1| hypothetical protein ARALYDRAFT_888168 [Arabidopsis lyrata subsp. lyrata]

 Score =  135 bits (341), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 11/115 (9%)

Query: 26  VCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84
           V +  V+ A IIL LVHLLQ+AE +IK EA WAIS+AT GGSHE IQ+LV+QG IKPLCD
Sbjct: 366 VQIEAVVAAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCD 425

Query: 85  LLVCSDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           LL+C D RIVTVCL G          ++++G++  VN+Y Q+I E DGLDK+ENL
Sbjct: 426 LLICPDPRIVTVCLEGLENILKVGEADKEMGLNGGVNLYAQIIEESDGLDKVENL 480

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217478|ref|NP_172398.1| importin alpha isoform 4 [Arabidopsis thaliana] gi|30681049|ref|NP_849623.1| importin alpha isoform 4 [Arabidopsis thaliana] gi|3249096|gb|AAC24079.1| Match to mRNA for importin alpha-like protein 4 (impa4) gb|Y14616 from A. thaliana. ESTs gb|N96440, gb|N37503, gb|N37498 and gb|T42198 come from this gene [Arabidopsis thaliana] gi|20259334|gb|AAM13992.1| putative importin alpha protein [Arabidopsis thaliana] gi|21436201|gb|AAM51388.1| putative importin alpha protein [Arabidopsis thaliana] gi|222422859|dbj|BAH19416.1| AT1G09270 [Arabidopsis thaliana] gi|332190300|gb|AEE28421.1| importin alpha isoform 4 [Arabidopsis thaliana] gi|332190301|gb|AEE28422.1| importin alpha isoform 4 [Arabidopsis thaliana]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 84/111 (75%), Gaps = 11/111 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            V+ A IIL LVHLLQ+AE +IK EA WAIS+AT GGSHE IQ+LV+QG IKPLCDLL+C
Sbjct: 371 AVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLIC 430

Query: 89  SDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
            D RIVTVCL G          ++++G+++ VN+Y Q+I E DGLDK+ENL
Sbjct: 431 PDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVENL 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2959322|emb|CAA74966.1| Importin alpha-like protein [Arabidopsis thaliana]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/111 (60%), Positives = 84/111 (75%), Gaps = 11/111 (9%)

Query: 30  TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            V+ A IIL LVHLLQ+AE +IK EA WAIS+AT GGSHE IQ+LV+QG IKPLCDLL+C
Sbjct: 361 AVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLIC 420

Query: 89  SDQRIVTVCLNG----------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
            D RIVTVCL G          ++++G+++ VN+Y Q+I E DGLDK+ENL
Sbjct: 421 PDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVENL 471

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.604	0.144	0.602	1.5e-22
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.604	0.146	0.556	1.3e-19
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.604	0.144	0.568	4.8e-19
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.604	0.146	0.534	1.6e-18
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.604	0.145	0.522	7.3e-18
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.410	0.100	0.584	7.6e-15
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.604	0.150	0.517	1.6e-14
UNIPROTKB|Q5ZJZ0	533	KPNA6 "Importin subunit alpha"	0.604	0.146	0.517	2.5e-13
MGI|MGI:1100836	536	Kpna6 "karyopherin (importin)	0.604	0.145	0.517	3.3e-13
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.604	0.151	0.494	3.9e-13

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 53/88 (60%), Positives = 67/88 (76%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNG----------N 101
             KEA WAIS+AT GGSHE IQ+LV+QG IKPLCDLL+C D RIVTVCL G          +
Sbjct:   394 KEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAD 453

Query:   102 RKLGMDNRVNVYTQMINECDGLDKIENL 129
             +++G+++ VN+Y Q+I E DGLDK+ENL
Sbjct:   454 KEMGLNSGVNLYAQIIEESDGLDKVENL 481

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 49/88 (55%), Positives = 61/88 (69%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNG----------N 101
             KEA WAIS+AT GGSH+ I++LV QG IKPLCDLLVC D RI+TVCL G           
Sbjct:   387 KEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAE 446

Query:   102 RKLGMDNRVNVYTQMINECDGLDKIENL 129
             + LG    +N Y Q+I++ +GL+KIENL
Sbjct:   447 KNLGHTGDMNYYAQLIDDAEGLEKIENL 474

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 4.8e-19, P = 4.8e-19
 Identities = 50/88 (56%), Positives = 59/88 (67%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNG----------N 101
             KEA WAIS+AT GG+H+ I+FLVSQG I+PLCDLL C D R+VTV L G           
Sbjct:   392 KEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENILKVGEAE 451

Query:   102 RKLGMDNRVNVYTQMINECDGLDKIENL 129
             + LG     N+Y QMI + DGLDKIENL
Sbjct:   452 KNLGNTGNDNLYAQMIEDADGLDKIENL 479

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNG----------N 101
             KEA W IS+AT GG+H+ I+F+VSQG IKPLCDLL C D ++VTVCL             
Sbjct:   390 KEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAE 449

Query:   102 RKLGMDNRVNVYTQMINECDGLDKIENL 129
             + LG     N+Y QMI+E +GL+KIENL
Sbjct:   450 KNLGHTGEDNLYAQMIDEAEGLEKIENL 477

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 7.3e-18, P = 7.3e-18
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL------- 104
             KEA WAIS+AT GGS + I+++V QG +KPLCDLLVC D RI+TVCL G   +       
Sbjct:   392 KEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAE 451

Query:   105 ---GMDNRVNVYTQMINECDGLDKIENL 129
                G    VN Y Q+I++ +GL+KIENL
Sbjct:   452 KVTGNTGDVNFYAQLIDDAEGLEKIENL 479

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL 104
             KEA WAI +A  GGS++ I FLV Q  IKPLCDLL CSD ++V VCL   +K+
Sbjct:   375 KEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEALKKI 427

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 44/85 (51%), Positives = 56/85 (65%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL---G-MD 107
             KEA WAIS+A+ GGS   I++LV Q  IK LCD+LVC D RI+ V L G   +   G +D
Sbjct:   385 KEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGEVD 444

Query:   108 NR---VNVYTQMINECDGLDKIENL 129
                  VN Y+QMI + +GL+KIENL
Sbjct:   445 KNLRDVNCYSQMIEDAEGLEKIENL 469

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

UNIPROTKB|Q5ZJZ0 KPNA6 "Importin subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 45/87 (51%), Positives = 55/87 (63%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMD- 107
             KEA WAI++AT GG+ E I++LV+ G IKPLCDLL   D +IV V LNG     +LG   
Sbjct:   394 KEAAWAITNATSGGTPEQIRYLVNLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 453

Query:   108 -NR----VNVYTQMINECDGLDKIENL 129
              N+    +N Y  MI E  GLDKIE L
Sbjct:   454 ANQSGTGINPYCSMIEEAYGLDKIEFL 480

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

MGI|MGI:1100836 Kpna6 "karyopherin (importin) alpha 6" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 45/87 (51%), Positives = 56/87 (64%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLG-MD 107
             KEA WAI++AT GG+ E I++LVS G IKPLCDLL   D +IV V LNG     +LG  +
Sbjct:   396 KEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 455

Query:   108 NR-----VNVYTQMINECDGLDKIENL 129
             ++     VN Y  +I E  GLDKIE L
Sbjct:   456 SKRSGSGVNPYCGLIEEAYGLDKIEFL 482

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0060135 "maternal process involved in female pregnancy" evidence=IMP

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 181 (68.8 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 42/85 (49%), Positives = 52/85 (61%)

Query:    52 KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNG-------NRKL 104
             KEA WAIS+AT  G+ + I FLVSQG +KPLCDLL  SD RI+ V L G        +K 
Sbjct:   383 KEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVSDPRIINVALEGIENILVAGKKE 442

Query:   105 GMDNRVNVYTQMINECDGLDKIENL 129
                  VN Y ++I + DGL KI +L
Sbjct:   443 AQVTGVNPYKKIIEDADGLGKIYDL 467

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-09
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-04

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 94.6 bits (235), Expect = 1e-23
 Identities = 50/111 (45%), Positives = 69/111 (62%), Gaps = 12/111 (10%)

Query: 31  VIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSH--EHIQFLVSQGYIKPLCDLLV 87
           VI AN+I  L+HLL  AE +I KEA WAIS+AT GG +  + I++LVSQG+IKPLCDLL 
Sbjct: 365 VIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424

Query: 88  CSDQRIVTVCLNGNR---KLGMDNR------VNVYTQMINECDGLDKIENL 129
             D +I+ V L+      K+G  +R      +N+Y   + +  G+D I  L
Sbjct: 425 VVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGL 475

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 31 VIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
          VI A  +  LV LL  ++  + +EA WA+S+ +  G++++IQ +V  G +  L  LL   
Sbjct: 3  VIQAGGLPALVSLLSSSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 90 DQRIVTVCL 98
          D+ +V   L
Sbjct: 62 DEEVVKAAL 70

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 30  TVIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            V+ A  +  LV LL+  + E+ K A WA+ +   G   ++   ++  G +  L +LL  
Sbjct: 44  AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLIVLEAGGVPKLVNLLDS 102

Query: 89  SDQRIVTVCLN 99
           S++ I      
Sbjct: 103 SNEDIQKNATG 113

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.84
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.73
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.65
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.51
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.42
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.34
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.32
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	99.02
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.01
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.69
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.57
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.52
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.51
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	98.45
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.45
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.26
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.23
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.06
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.06
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.04
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.93
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.86
KOG4199	461	consensus Uncharacterized conserved protein [Funct	97.8
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.69
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.68
KOG4199	461	consensus Uncharacterized conserved protein [Funct	97.58
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.55
KOG1048	717	consensus Neural adherens junction protein Plakoph	97.55
KOG1048	717	consensus Neural adherens junction protein Plakoph	97.5
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.27
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.24
PRK09687	280	putative lyase; Provisional	97.0
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.93
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.81
PRK09687	280	putative lyase; Provisional	96.64
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	96.61
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.51
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.4
KOG1293	678	consensus Proteins containing armadillo/beta-caten	96.18
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.16
KOG1293	678	consensus Proteins containing armadillo/beta-caten	96.02
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.84
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.83
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	95.65
KOG3678	832	consensus SARM protein (with sterile alpha and arm	95.62
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.52
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.5
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	95.43
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.2
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	95.18
KOG4646	173	consensus Uncharacterized conserved protein, conta	95.16
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.02
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	94.95
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	94.8
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	94.77
KOG3678	832	consensus SARM protein (with sterile alpha and arm	94.53
PF05536	543	Neurochondrin: Neurochondrin	94.38
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.09
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	94.04
PTZ00429	746	beta-adaptin; Provisional	93.97
COG5369	743	Uncharacterized conserved protein [Function unknow	93.94
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.6
KOG4646	173	consensus Uncharacterized conserved protein, conta	93.5
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	92.89
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	91.74
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	91.61
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	91.54
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	90.92
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.69
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	89.51
PF07923	293	N1221: N1221-like protein; InterPro: IPR012486 The	88.54
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	88.51
COG1413	335	FOG: HEAT repeat [Energy production and conversion	88.37
PF08045	257	CDC14: Cell division control protein 14, SIN compo	88.31
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	87.99
KOG4413	524	consensus 26S proteasome regulatory complex, subun	87.6
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	87.45
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	87.35
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	87.18
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	87.15
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.09
KOG1824	1233	consensus TATA-binding protein-interacting protein	87.06
TIGR02270	410	conserved hypothetical protein. Members are found	86.7
COG1413	335	FOG: HEAT repeat [Energy production and conversion	86.59
KOG2259	823	consensus Uncharacterized conserved protein [Funct	86.46
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	86.45
PTZ00429	746	beta-adaptin; Provisional	86.32
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.32
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	86.27
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	86.2
KOG3036	293	consensus Protein involved in cell differentiation	85.6
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	85.59
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	85.56
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	85.52
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	85.05
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	84.73
KOG2734	536	consensus Uncharacterized conserved protein [Funct	84.22
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	84.21
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	84.17
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	83.13
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	82.34
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	82.17
KOG4413	524	consensus 26S proteasome regulatory complex, subun	81.64
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	81.4
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	80.93
COG5369	743	Uncharacterized conserved protein [Function unknow	80.76
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	80.67
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	80.46
TIGR02270	410	conserved hypothetical protein. Members are found	80.33
PF08216	108	CTNNBL: Catenin-beta-like, Arm-motif containing nu	80.2

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3e-31  Score=214.84  Aligned_cols=114  Identities=48%  Similarity=0.720  Sum_probs=106.5

Q ss_pred             HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025           16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD   90 (129)
Q Consensus        16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d   90 (129)
                      .++|++|||++    |+|+|+++|++|.|+.+|+++|+++| ||+|||+|++.+|+++|+.||+++|+|++||++|.+.|
T Consensus       341 EAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D  420 (514)
T KOG0166|consen  341 EACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD  420 (514)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC
Confidence            35699999999    99999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccCC---CC---hHHHHHHHhccchhhhcCC
Q 044025           91 QRIVTVCLNGNRKLGMDN---RV---NVYTQMINECDGLDKIENL  129 (129)
Q Consensus        91 ~~~~~~aL~al~ni~~~~---~~---~~~~~~i~e~ggl~~le~L  129 (129)
                      .+++.++|+|++||.+.+   ..   ++++.+|+||||+++||.|
T Consensus       421 ~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~L  465 (514)
T KOG0166|consen  421 VKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENL  465 (514)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHh
Confidence            999999999999984411   11   8999999999999999976

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.95  E-value=7.1e-29  Score=192.83  Aligned_cols=121  Identities=43%  Similarity=0.650  Sum_probs=108.2

Q ss_pred             CCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC--HHHHHHHHhcCChH
Q 044025            8 PKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS--HEHIQFLVSQGYIK   80 (129)
Q Consensus         8 ~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~--~~~i~~lv~~g~i~   80 (129)
                      |++ .....+||++|||++    |||+|++++++|+|+++|++.++++| |||||++|++.||.  |++++||+++|+|+
T Consensus       339 ~ke-~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~Ik  417 (526)
T COG5064         339 PKE-NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIK  417 (526)
T ss_pred             hhh-hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchh
Confidence            455 233356799999999    99999999999999999999999999 99999999999974  89999999999999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhccc---------CCCChHHHHHHHhccchhhhcCC
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLGM---------DNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~~---------~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      |||++|...|.++++++|++++|+.+         +...|.|+.+++++||.|+|+.|
T Consensus       418 pLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~  475 (526)
T COG5064         418 PLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGL  475 (526)
T ss_pred             HHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHh
Confidence            99999999999999999999999844         33467899999999999999754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=9.1e-21  Score=154.08  Aligned_cols=120  Identities=29%  Similarity=0.355  Sum_probs=109.2

Q ss_pred             cccCCCCChHHHHHH-HHHHHhhH------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025            4 QQKNPKLPLSKLKEN-TLDSNIVV------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS   75 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~-w~lsNI~~------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~   75 (129)
                      ..+.++.+.+++|.+ |++||+|+      +...+  +.++|.|..++.+.|.++. +||||++|+++|++ +.++.+++
T Consensus       201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v--~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n-e~iq~vi~  277 (514)
T KOG0166|consen  201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVV--APILPALLRLLHSTDEEVLTDACWALSYLTDGSN-EKIQMVID  277 (514)
T ss_pred             HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHH
Confidence            345577778999987 99999999      56666  8899999999999999999 99999999999955 89999999


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           76 QGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        76 ~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      .|++|.|+++|.+..+.++.++|++++||  .+|++.+++.+.++|+++.|..
T Consensus       278 ~gvv~~LV~lL~~~~~~v~~PaLRaiGNI--vtG~d~QTq~vi~~~~L~~l~~  328 (514)
T KOG0166|consen  278 AGVVPRLVDLLGHSSPKVVTPALRAIGNI--VTGSDEQTQVVINSGALPVLSN  328 (514)
T ss_pred             ccchHHHHHHHcCCCcccccHHHhhccce--eeccHHHHHHHHhcChHHHHHH
Confidence            99999999999999999999999999999  5689999999999999998754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.73  E-value=3.8e-18  Score=133.22  Aligned_cols=112  Identities=25%  Similarity=0.326  Sum_probs=102.1

Q ss_pred             ChHHHHHH-HHHHHhhH------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025           11 PLSKLKEN-TLDSNIVV------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL   82 (129)
Q Consensus        11 ~~~~~r~~-w~lsNI~~------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l   82 (129)
                      -++++|++ |+|||+|+      .-+.+  +..+|.|..++.+.|+++- +||||+|++.+|.+ +.++.+++.|+-++|
T Consensus       214 ~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RL  290 (526)
T COG5064         214 HISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRL  290 (526)
T ss_pred             hHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHH
Confidence            36899998 89999999      34445  6789999999999999999 99999999999955 889999999999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           83 CDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        83 ~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      +++|.+++.+++.++|++++||  .+|++.+++.+.+||.|+.+.
T Consensus       291 vElLs~~sa~iqtPalR~vGNI--VTG~D~QTqviI~~G~L~a~~  333 (526)
T COG5064         291 VELLSHESAKIQTPALRSVGNI--VTGSDDQTQVIINCGALKAFR  333 (526)
T ss_pred             HHHhcCccccccCHHHHhhcCe--eecCccceehheecccHHHHH
Confidence            9999999999999999999999  568999999999999998764

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.65  E-value=7.2e-16  Score=140.34  Aligned_cols=120  Identities=13%  Similarity=0.071  Sum_probs=102.8

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      .+..+++..+..++|+|+|+++    +.+.++++|++|+++.+|++++++++ ||+|+|+|++.+++.+|..++++.|++
T Consensus       617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV  696 (2102)
T PLN03200        617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI  696 (2102)
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence            3444445566667799999999    78889999999999999999999999 999999999998888888899999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           80 KPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        80 ~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |+|+++|+++|.+++..++.+|.|+.+.   .+....+.+.|+++.|-
T Consensus       697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv  741 (2102)
T PLN03200        697 KPLIKLAKSSSIEVAEQAVCALANLLSD---PEVAAEALAEDIILPLT  741 (2102)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHH
Confidence            9999999999999999999999999752   22455566778887664

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.51  E-value=1.8e-13  Score=125.04  Aligned_cols=115  Identities=14%  Similarity=0.018  Sum_probs=100.6

Q ss_pred             CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025           10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD   84 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~   84 (129)
                      ....+...+|++++++.    .++.+++.|.+|.|+++|.+++..+| .|+|+++|++++ +.++...++++|+||+|++
T Consensus       417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~-ndenr~aIieaGaIP~LV~  495 (2102)
T PLN03200        417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDE-VDESKWAITAAGGIPPLVQ  495 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHH
Confidence            34455556799999997    78889999999999999999999999 999999999987 6577888999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           85 LLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        85 lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      +|.+++.++...+.|+|+|+..  +.++....+.++|+++.|-
T Consensus       496 LL~s~~~~iqeeAawAL~NLa~--~~~qir~iV~~aGAIppLV  536 (2102)
T PLN03200        496 LLETGSQKAKEDSATVLWNLCC--HSEDIRACVESAGAVPALL  536 (2102)
T ss_pred             HHcCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999963  4666677788999998753

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.42  E-value=3.3e-12  Score=84.27  Aligned_cols=99  Identities=20%  Similarity=0.230  Sum_probs=81.7

Q ss_pred             cCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025            6 KNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK   80 (129)
Q Consensus         6 ~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~   80 (129)
                      +.+.++......+|++.|++.    ..+.+++.|++|.+.++|++++++++ .|+|+++|++.+. +.....+++.|+++
T Consensus        16 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~   94 (120)
T cd00020          16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVP   94 (120)
T ss_pred             HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc-HHHHHHHHHCCChH
Confidence            333333333334479999997    45667788999999999999999999 9999999999974 45566778899999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .+..+|...+.++...+++++.|+.
T Consensus        95 ~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          95 KLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.34  E-value=1.6e-11  Score=80.93  Aligned_cols=95  Identities=29%  Similarity=0.436  Sum_probs=83.3

Q ss_pred             HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCC
Q 044025           30 TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDN  108 (129)
Q Consensus        30 ~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~  108 (129)
                      .+++.|++|.+++++.+++.++| .|+|++.|++.+ +++....+++.|++|.+.++|.+++++++..++++++|+..  
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~--   78 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA--   78 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--
Confidence            35678999999999999999999 999999999998 45777888899999999999999999999999999999964  


Q ss_pred             CChHHHHHHHhccchhhhc
Q 044025          109 RVNVYTQMINECDGLDKIE  127 (129)
Q Consensus       109 ~~~~~~~~i~e~ggl~~le  127 (129)
                      ........+.+.|+++.+.
T Consensus        79 ~~~~~~~~~~~~g~l~~l~   97 (120)
T cd00020          79 GPEDNKLIVLEAGGVPKLV   97 (120)
T ss_pred             CcHHHHHHHHHCCChHHHH
Confidence            4556677778888887764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=7.6e-12  Score=98.88  Aligned_cols=115  Identities=19%  Similarity=0.186  Sum_probs=99.7

Q ss_pred             CCChHHHHHHH-HHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC--ChHH
Q 044025            9 KLPLSKLKENT-LDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG--YIKP   81 (129)
Q Consensus         9 ~~~~~~~r~~w-~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g--~i~~   81 (129)
                      .......|++. +++|++.   .-+.++.+|.+|.|+.+++++|.++| .++-+++|++.+.  ...+.+++.+  ++|.
T Consensus       178 skdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~--~~Rk~Laqaep~lv~~  255 (550)
T KOG4224|consen  178 SKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR--RARKILAQAEPKLVPA  255 (550)
T ss_pred             cchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH--HHHHHHHhcccchHHH
Confidence            33455667887 9999998   55667899999999999999999999 9999999999863  5667888877  9999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           82 LCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        82 l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      |++++..+++++...+--|++|++.   +.+|...+.++|+++.+-+
T Consensus       256 Lv~Lmd~~s~kvkcqA~lALrnlas---dt~Yq~eiv~ag~lP~lv~  299 (550)
T KOG4224|consen  256 LVDLMDDGSDKVKCQAGLALRNLAS---DTEYQREIVEAGSLPLLVE  299 (550)
T ss_pred             HHHHHhCCChHHHHHHHHHHhhhcc---cchhhhHHHhcCCchHHHH
Confidence            9999999999999999999999973   6778888999999987654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=99.02  E-value=5.6e-10  Score=61.93  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=34.6

Q ss_pred             hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025           27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY   63 (129)
Q Consensus        27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~   63 (129)
                      +.+.++++|++|.|+++|+++++++| +|+|||+|++.
T Consensus         4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            57789999999999999999999999 99999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.8e-09  Score=85.56  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=90.2

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH---hHHHHHhhc--cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV---CMYTVIVAN--IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ   76 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~---qiq~vi~~g--~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~   76 (129)
                      +..++..++.+.-+...++|||+.   .-+.+..++  ++|.|++++.++++++| .|.-|+.|++++ + +-...++++
T Consensus       214 Vsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t-~Yq~eiv~a  291 (550)
T KOG4224|consen  214 VSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-T-EYQREIVEA  291 (550)
T ss_pred             hhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-c-hhhhHHHhc
Confidence            344555556666667779999998   444555677  99999999999999999 999999999997 4 445678999


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025           77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus        77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      |.+|.++.+|+++...++-....+|+|+.-+.. |  ...+.+.|.+..+
T Consensus       292 g~lP~lv~Llqs~~~plilasVaCIrnisihpl-N--e~lI~dagfl~pL  338 (550)
T KOG4224|consen  292 GSLPLLVELLQSPMGPLILASVACIRNISIHPL-N--EVLIADAGFLRPL  338 (550)
T ss_pred             CCchHHHHHHhCcchhHHHHHHHHHhhcccccC-c--ccceecccchhHH
Confidence            999999999998887787788889988742211 1  1235555555443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.69  E-value=3.1e-07  Score=78.49  Aligned_cols=110  Identities=18%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             HHHHHH-HHHHhhH--hHH-HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           14 KLKENT-LDSNIVV--CMY-TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        14 ~~r~~w-~lsNI~~--qiq-~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      .+|.+. .|.|++.  +++ .+.+.|+++.|+.+|++.+.++. -+.+.|.+++...  +.-..+.+.|++++|+.++.+
T Consensus       265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s  342 (708)
T PF05804_consen  265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPS  342 (708)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcC
Confidence            455565 8999999  444 35589999999999999999999 9999999999874  455677899999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      ++..++..+++.|.|+.   ++...+..|.++|+++++..
T Consensus       343 ~~~~l~~~aLrlL~NLS---fd~~~R~~mV~~GlIPkLv~  379 (708)
T PF05804_consen  343 ENEDLVNVALRLLFNLS---FDPELRSQMVSLGLIPKLVE  379 (708)
T ss_pred             CCHHHHHHHHHHHHHhC---cCHHHHHHHHHCCCcHHHHH
Confidence            99999999999999985   57888999999999998854

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.57  E-value=9.4e-07  Score=67.31  Aligned_cols=53  Identities=17%  Similarity=0.082  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhhH--hHHHHH-hhccHHHHHHHhccCChHHH-HHHHHHHHhccCC
Q 044025           13 SKLKENTLDSNIVV--CMYTVI-VANIILLLVHLLQHAELEIK-EATWAISSATYGG   65 (129)
Q Consensus        13 ~~~r~~w~lsNI~~--qiq~vi-~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~   65 (129)
                      ..-+..++++|.++  ..|.++ +.|.++.+..+|.++++.+| .|.|++.|++...
T Consensus        29 i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen   29 IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence            33334469999988  666666 68999999999999999999 9999999998763

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.52  E-value=2.3e-07  Score=51.22  Aligned_cols=40  Identities=30%  Similarity=0.316  Sum_probs=37.3

Q ss_pred             CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           66 SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        66 ~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ++++.+.+++.|++|+|+++|.+.|++++..++++|+|+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678899999999999999999999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.51  E-value=9.3e-07  Score=75.58  Aligned_cols=116  Identities=18%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             ccccCCCCChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            3 IQQKNPKLPLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         3 i~~~~~~~~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      +..+..+ +...+-. +++|.+++-   ....+.+.|++|.|..++.+++.+.+ .|..+|.|++.+.  +....+++.|
T Consensus       296 v~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~--~~R~~mV~~G  372 (708)
T PF05804_consen  296 VKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP--ELRSQMVSLG  372 (708)
T ss_pred             HHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH--HHHHHHHHCC
Confidence            3344333 3333333 468888887   55667789999999999999999999 9999999999874  5567889999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      ++|+|+.+|..  +.....++..+.++..   +++...++...++++.+
T Consensus       373 lIPkLv~LL~d--~~~~~val~iLy~LS~---dd~~r~~f~~TdcIp~L  416 (708)
T PF05804_consen  373 LIPKLVELLKD--PNFREVALKILYNLSM---DDEARSMFAYTDCIPQL  416 (708)
T ss_pred             CcHHHHHHhCC--CchHHHHHHHHHHhcc---CHhhHHHHhhcchHHHH
Confidence            99999999974  4455678888999863   55666777777777665

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=98.45  E-value=4.8e-07  Score=49.23  Aligned_cols=36  Identities=33%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025           28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY   63 (129)
Q Consensus        28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~   63 (129)
                      .+.+++.|++|.|++++++++.+++ +|+|+|+|++.
T Consensus         5 ~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            4567899999999999999999999 99999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.45  E-value=2e-06  Score=71.09  Aligned_cols=113  Identities=17%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             hHHHHHH-HHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025           12 LSKLKEN-TLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL   86 (129)
Q Consensus        12 ~~~~r~~-w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL   86 (129)
                      ...-+.+ -++++++.   ..+.+++.+.++.|..++.+.+..+| .+..++.+++.. +++...++.+.|+++.+...|
T Consensus       133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~~sgll~~ll~eL  211 (503)
T PF10508_consen  133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVVNSGLLDLLLKEL  211 (503)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHHhccHHHHHHHHh
Confidence            3334455 49999998   56678899999999999999888999 999999999987 678888889999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           87 VCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        87 ~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      ..+|.-+...+++.+..++.   ++.-.+.+.+.|++++|..
T Consensus       212 ~~dDiLvqlnalell~~La~---~~~g~~yL~~~gi~~~L~~  250 (503)
T PF10508_consen  212 DSDDILVQLNALELLSELAE---TPHGLQYLEQQGIFDKLSN  250 (503)
T ss_pred             cCccHHHHHHHHHHHHHHHc---ChhHHHHHHhCCHHHHHHH
Confidence            99888899999999999974   6666788999999998753

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.26  E-value=2.5e-06  Score=49.75  Aligned_cols=45  Identities=16%  Similarity=0.301  Sum_probs=37.3

Q ss_pred             HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHh
Q 044025           16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSA   61 (129)
Q Consensus        16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni   61 (129)
                      .++|+|++++.    ..+. .-..++|.|..+|++++.+|| .|+|+|+|+
T Consensus         6 ~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    6 AAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            45699999886    3333 447899999999999999999 999999985

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.23  E-value=3.3e-06  Score=49.23  Aligned_cols=54  Identities=20%  Similarity=0.253  Sum_probs=44.4

Q ss_pred             hHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           49 LEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        49 ~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      +.+| .|+|+|++++.+ .+++.+. ....++|.|..+|+.++++++..++++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~-~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEG-CPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTT-THHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcc-cHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689 999999998876 4455544 3457999999999988899999999999975

...

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.06  E-value=4.1e-05  Score=58.37  Aligned_cols=94  Identities=17%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             CCChHHHHHHHHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025            9 KLPLSKLKENTLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus         9 ~~~~~~~r~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      .++...+...-.|.|++.  ..+.++ ++.+|.++.+|..|+..+| .+.+++.|++..  ++..++++.+++.+.|+.+
T Consensus       107 lns~~Q~agLrlL~nLtv~~~~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n--p~~~~~Ll~~q~~~~~~~L  183 (254)
T PF04826_consen  107 LNSEVQLAGLRLLTNLTVTNDYHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN--PDMTRELLSAQVLSSFLSL  183 (254)
T ss_pred             CCCHHHHHHHHHHHccCCCcchhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhccC--HHHHHHHHhccchhHHHHH
Confidence            344444444459999988  555555 5689999999999999999 999999999985  5788999999999999999


Q ss_pred             cCCC-CHHHHHHHHHHHhhcc
Q 044025           86 LVCS-DQRIVTVCLNGNRKLG  105 (129)
Q Consensus        86 L~~~-d~~~~~~aL~al~ni~  105 (129)
                      ++.+ +..+...+|.-.+|+.
T Consensus       184 f~~~~~~~~l~~~l~~~~ni~  204 (254)
T PF04826_consen  184 FNSSESKENLLRVLTFFENIN  204 (254)
T ss_pred             HccCCccHHHHHHHHHHHHHH
Confidence            9874 5777888888888873

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.06  E-value=5.1e-05  Score=62.83  Aligned_cols=108  Identities=12%  Similarity=0.096  Sum_probs=92.2

Q ss_pred             HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025           16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD   90 (129)
Q Consensus        16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d   90 (129)
                      -.++.+.++..    ..+.+.+.+++|.++.++.++|..+. .|+-+|.+++..  +...+.+++.+.++.|.+++...+
T Consensus        96 l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~~  173 (503)
T PF10508_consen   96 LALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQSS  173 (503)
T ss_pred             HHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhccC
Confidence            34578888877    56777889999999999999999999 999999999985  256677889999999999998778


Q ss_pred             HHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           91 QRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        91 ~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      ..++..+++.+.++++  .+++....+.+.|.++++.
T Consensus       174 ~~vR~Rv~el~v~i~~--~S~~~~~~~~~sgll~~ll  208 (503)
T PF10508_consen  174 DIVRCRVYELLVEIAS--HSPEAAEAVVNSGLLDLLL  208 (503)
T ss_pred             HHHHHHHHHHHHHHHh--cCHHHHHHHHhccHHHHHH
Confidence            7888889999999864  5788889999999988865

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.00012  Score=57.71  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=74.9

Q ss_pred             hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH-HHHHHHHHHHhhc
Q 044025           27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ-RIVTVCLNGNRKL  104 (129)
Q Consensus        27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~-~~~~~aL~al~ni  104 (129)
                      ....++..|.++++...+++.+..+| -|+|+|+-++.. +|.--..+++.|.++.|...|.++++ .....||.|++.+
T Consensus       116 nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN-NP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissL  194 (342)
T KOG2160|consen  116 NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN-NPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSL  194 (342)
T ss_pred             hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence            34556777888888889999999999 999999999998 77766678899999999999987665 4558899999987


Q ss_pred             ccCCCChHHHHHHHhccchhhh
Q 044025          105 GMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus       105 ~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      .+  ...+....+...+|...|
T Consensus       195 IR--n~~~g~~~fl~~~G~~~L  214 (342)
T KOG2160|consen  195 IR--NNKPGQDEFLKLNGYQVL  214 (342)
T ss_pred             Hh--cCcHHHHHHHhcCCHHHH
Confidence            43  344444555555555443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.93  E-value=2.7e-05  Score=42.09  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=34.7

Q ss_pred             HHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           68 EHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        68 ~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ++..++++.|++|+|+.+|.+++++++..++++|+|+.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46678889999999999999999999999999999984

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.86  E-value=2.8e-05  Score=48.78  Aligned_cols=57  Identities=23%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             HHHHHHHh-ccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           37 ILLLVHLL-QHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        37 lp~L~~ll-~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +|.|++.| +++++.+| +|+++++++-   ++         .++|.|..++.++|+.++..++++++++.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP---------EAIPALIELLKDEDPMVRRAAARALGRIG   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            58899998 88899999 9999999542   22         25889999999999999999999999874

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=0.00027  Score=56.10  Aligned_cols=98  Identities=18%  Similarity=0.214  Sum_probs=80.1

Q ss_pred             hHHHHHhhccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCC--------HHHHHHHHhcCChHHHHhhcCC-CCHHHHH
Q 044025           27 CMYTVIVANIILLLVHLLQ-HAELEIK-EATWAISSATYGGS--------HEHIQFLVSQGYIKPLCDLLVC-SDQRIVT   95 (129)
Q Consensus        27 qiq~vi~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~--------~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~   95 (129)
                      .-|.+.+.+++|.+...|. ++..++- |++|+++-+....+        ..+.+.+++.|.+..|.+.|.. -||....
T Consensus       181 nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~  260 (461)
T KOG4199|consen  181 NRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLV  260 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHH
Confidence            3556779999999996655 4666676 99999999987532        3567788888999999999975 7788888


Q ss_pred             HHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           96 VCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        96 ~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      -..-+|+.++   ..+++|+.|.|.|||+.+-
T Consensus       261 ~l~~tl~~lA---Vr~E~C~~I~e~GGl~tl~  289 (461)
T KOG4199|consen  261 SLSTTLKALA---VRDEICKSIAESGGLDTLL  289 (461)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHccCHHHHH
Confidence            8888999886   3789999999999999764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.69  E-value=0.00025  Score=55.16  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=81.0

Q ss_pred             HHHHHhhH--hHHHH-HhhccHHHHHHHh-----c--cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025           19 TLDSNIVV--CMYTV-IVANIILLLVHLL-----Q--HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV   87 (129)
Q Consensus        19 w~lsNI~~--qiq~v-i~~g~lp~L~~ll-----~--~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~   87 (129)
                      .+++++.+  +.+.+ .++|.++.+.+++     .  ..+..++ +++.++=-++-.  ++-+..+.+.+++|.+++++.
T Consensus       172 ~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~L~~i~~  249 (312)
T PF03224_consen  172 QCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE--PEIAEELNKKYLIPLLADILK  249 (312)
T ss_dssp             HHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC--HHHHHHHhccchHHHHHHHHH
Confidence            58888888  55444 4899999999999     2  3466777 988888777764  467788889999999999996


Q ss_pred             -CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           88 -CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        88 -~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                       +...+++++++.++.|+... ..+.....+.++|+++.++.
T Consensus       250 ~~~KEKvvRv~la~l~Nl~~~-~~~~~~~~mv~~~~l~~l~~  290 (312)
T PF03224_consen  250 DSIKEKVVRVSLAILRNLLSK-APKSNIELMVLCGLLKTLQN  290 (312)
T ss_dssp             H--SHHHHHHHHHHHHHTTSS-SSTTHHHHHHHH-HHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHhc-cHHHHHHHHHHccHHHHHHH
Confidence             47899999999999999632 23337788899999887754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.68  E-value=0.00019  Score=44.92  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      .+......+++++++..       ..++|.|.++++++++.+| .|+|+++.+-   ++         .+++.|..++..
T Consensus        13 ~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---~~---------~~~~~L~~~l~~   73 (88)
T PF13646_consen   13 DPQVRAEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIG---DP---------EAIPALIKLLQD   73 (88)
T ss_dssp             SHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---HH---------HTHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CH---------HHHHHHHHHHcC
Confidence            34444445578887632       2468999999999999999 9999999872   22         277888888876


Q ss_pred             C-CHHHHHHHHHHHh
Q 044025           89 S-DQRIVTVCLNGNR  102 (129)
Q Consensus        89 ~-d~~~~~~aL~al~  102 (129)
                      + +..+...+.++|+
T Consensus        74 ~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   74 DDDEVVREAAAEALG   88 (88)
T ss_dssp             -SSHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhhcC
Confidence            4 4556777888774

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.00066  Score=53.97  Aligned_cols=111  Identities=19%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             HHHHHH-HHHHHhhH-------------hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025           13 SKLKEN-TLDSNIVV-------------CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQ   76 (129)
Q Consensus        13 ~~~r~~-w~lsNI~~-------------qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~   76 (129)
                      ...|++ |++.-+..             +.+.+...|++..|++.+.-+ |+++- +++-+++.++.. + +--+.+.+.
T Consensus       205 ~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~-E~C~~I~e~  282 (461)
T KOG4199|consen  205 RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-D-EICKSIAES  282 (461)
T ss_pred             HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-H-HHHHHHHHc
Confidence            466776 78877765             566777788999999999976 89999 999999999986 2 666777899


Q ss_pred             CChHHHHhhcCC-CCH---HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           77 GYIKPLCDLLVC-SDQ---RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        77 g~i~~l~~lL~~-~d~---~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      |.++.+..++.. ++.   .+.+.++..|+.++   |++.....|.+.||+++|..
T Consensus       283 GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA---G~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  283 GGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA---GSDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             cCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh---CCCchHHHHHHhcChHHHHH
Confidence            999999999976 333   35567777777776   57777889999999999864

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00014  Score=63.06  Aligned_cols=85  Identities=19%  Similarity=0.190  Sum_probs=69.6

Q ss_pred             hccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCCC
Q 044025           34 ANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRV  110 (129)
Q Consensus        34 ~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~  110 (129)
                      .-++|.|+.+|++. ++|++ .||.|++|++.- -|.-...+|+.++||.|+.=|. -+.-++.+++|+|++.|.+    
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev-lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR----  284 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEV-LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR----  284 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh-ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh----
Confidence            45789999999985 89999 999999999975 5666788999999999999554 4778899999999999853    


Q ss_pred             hHHHHHHHhccchh
Q 044025          111 NVYTQMINECDGLD  124 (129)
Q Consensus       111 ~~~~~~i~e~ggl~  124 (129)
                       .....+.++|+|.
T Consensus       285 -~H~~AiL~AG~l~  297 (1051)
T KOG0168|consen  285 -RHPKAILQAGALS  297 (1051)
T ss_pred             -hccHHHHhcccHH
Confidence             2233567777764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=97.55  E-value=0.00028  Score=60.37  Aligned_cols=90  Identities=17%  Similarity=0.240  Sum_probs=73.2

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHH
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVY  113 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~  113 (129)
                      =+|..+.+|.+.++.+| .|+.-+-.++.|.  ..++.-+ +.|-|+.|+.+|.+...+++..+..+++|+.....+..-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd--~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD--NKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhh--HHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            46888999999999999 9999999999984  3455555 679999999999999999999999999998533233223


Q ss_pred             HHHHHhccchhhhc
Q 044025          114 TQMINECDGLDKIE  127 (129)
Q Consensus       114 ~~~i~e~ggl~~le  127 (129)
                      .-.|.+++|+..+-
T Consensus       312 Klai~~~~Gv~~l~  325 (717)
T KOG1048|consen  312 KLAIKELNGVPTLV  325 (717)
T ss_pred             chhhhhcCChHHHH
Confidence            45688999987764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=97.50  E-value=0.00057  Score=58.52  Aligned_cols=110  Identities=17%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             HHHHH-HHHHHhhH-------hH-HHH-HhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025           14 KLKEN-TLDSNIVV-------CM-YTV-IVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL   82 (129)
Q Consensus        14 ~~r~~-w~lsNI~~-------qi-q~v-i~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l   82 (129)
                      .++++ -+|=|+++       .+ +.+ -....+|.++++|+.+|.++. .++-+|.|++.+   -+.+.++..+++|-|
T Consensus       535 TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d---~rnk~ligk~a~~~l  611 (717)
T KOG1048|consen  535 TLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD---IRNKELIGKYAIPDL  611 (717)
T ss_pred             HHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC---chhhhhhhcchHHHH
Confidence            33444 49999999       22 334 246789999999999999999 999999999998   457788889999999


Q ss_pred             HhhcCCCC------HHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           83 CDLLVCSD------QRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        83 ~~lL~~~d------~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      ++.|....      .+++..++.++-|+..  ..-..+.-+.+.+|+++|-.
T Consensus       612 v~~Lp~~~~~~~~sedtv~~vc~tl~niv~--~~~~nAkdl~~~~g~~kL~~  661 (717)
T KOG1048|consen  612 VRCLPGSGPSTSLSEDTVRAVCHTLNNIVR--KNVLNAKDLLEIKGIPKLRL  661 (717)
T ss_pred             HHhCcCCCCCcCchHHHHHHHHHhHHHHHH--HhHHHHHHHHhccChHHHHH
Confidence            99997532      5788889999998842  35566777889999998753

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.27  E-value=0.0023  Score=41.95  Aligned_cols=82  Identities=11%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             HHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHH
Q 044025           19 TLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRI   93 (129)
Q Consensus        19 w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~   93 (129)
                      ++|+.++-    ++..-+ ..++|++...+.+.|.+|| .||-++.|++.....+-+.++  ..+++.|+.+....|+.+
T Consensus         8 i~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~V   84 (97)
T PF12755_consen    8 IGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENV   84 (97)
T ss_pred             HHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhH
Confidence            57777655    333322 5689999999999999999 999999999976432222222  358899999998888887


Q ss_pred             HHHHHHHHhhc
Q 044025           94 VTVCLNGNRKL  104 (129)
Q Consensus        94 ~~~aL~al~ni  104 (129)
                      .. +.+.+.++
T Consensus        85 r~-~a~~Ld~l   94 (97)
T PF12755_consen   85 RS-AAELLDRL   94 (97)
T ss_pred             HH-HHHHHHHH
Confidence            55 44656554

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.24  E-value=0.00047  Score=35.62  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATY   63 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~   63 (129)
                      ++|.+.+++++++++|| .|++++++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            58999999999999999 99999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PRK09687 putative lyase; Provisional

Probab=97.00  E-value=0.0032  Score=48.56  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..+|.|+.+|++.++++| .|+++|+++..+ ++         .+++.|..+|...+..+...++++|+++
T Consensus       159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~-~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~  219 (280)
T PRK09687        159 AAIPLLINLLKDPNGDVRNWAAFALNSNKYD-NP---------DIREAFVAMLQDKNEEIRIEAIIGLALR  219 (280)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC-CH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence            467788888888888888 888888877332 22         1344555555556666666666666554

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.93  E-value=0.0057  Score=38.09  Aligned_cols=66  Identities=17%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhhcccCCCChHHHHHHHhcc
Q 044025           51 IKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECD  121 (129)
Q Consensus        51 v~eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~g  121 (129)
                      +|.|.||++|+.+.  +.=+.++-+.++++.++++... +-..++-.+..+++-+++   +.+-++.+.+.|
T Consensus         4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~---T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS---TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC---CHHHHHHHHHcC
Confidence            34899999999875  2445556678999999998874 668899999999999874   777788887776

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.018  Score=45.66  Aligned_cols=89  Identities=17%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhhH---hH-HHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           15 LKENTLDSNIVV---CM-YTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        15 ~r~~w~lsNI~~---qi-q~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      .+++|+++-.+.   .+ +.+++.|.++.|+..+++. +..+| .|.+|+|++...--+. +..+...+-...|.+.|..
T Consensus       142 ~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl~~~G~~~L~~vl~~  220 (342)
T KOG2160|consen  142 ELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFLKLNGYQVLRDVLQS  220 (342)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHHhcCCHHHHHHHHHc
Confidence            346688887666   33 4577999999999999976 55778 9999999999874444 4455666669999999987


Q ss_pred             --CCHHHHHHHHHHHhhc
Q 044025           89 --SDQRIVTVCLNGNRKL  104 (129)
Q Consensus        89 --~d~~~~~~aL~al~ni  104 (129)
                        .+.++.+.++.-+..+
T Consensus       221 ~~~~~~lkrK~~~Ll~~L  238 (342)
T KOG2160|consen  221 NNTSVKLKRKALFLLSLL  238 (342)
T ss_pred             CCcchHHHHHHHHHHHHH
Confidence              6678888888877765

>PRK09687 putative lyase; Provisional

Probab=96.64  E-value=0.0079  Score=46.38  Aligned_cols=64  Identities=11%  Similarity=0.067  Sum_probs=40.2

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh-cCCCCHHHHHHHHHHHhhc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL-LVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l-L~~~d~~~~~~aL~al~ni  104 (129)
                      ..+++.+..++++.++.+| .|+|+|+.+-.....       ...+++.|..+ ++.+|+.+...+..+|+++
T Consensus        53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~  118 (280)
T PRK09687         53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-------QDNVFNILNNLALEDKSACVRASAINATGHR  118 (280)
T ss_pred             chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            3466777777788888888 888888887543211       11244555554 4556666666666666665

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=96.61  E-value=0.0092  Score=48.97  Aligned_cols=94  Identities=15%  Similarity=0.161  Sum_probs=70.3

Q ss_pred             HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC---CC----HHHHHHHHHHHh
Q 044025           31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC---SD----QRIVTVCLNGNR  102 (129)
Q Consensus        31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~---~d----~~~~~~aL~al~  102 (129)
                      -|+++++..|.+..+++|.++- +++.+++|+|...+ +-...+.+.|.=..++++|+.   .|    .+...++---+.
T Consensus        83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~-E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~  161 (604)
T KOG4500|consen   83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNN-ENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH  161 (604)
T ss_pred             hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCc-hhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence            3789999999999999999999 99999999999854 545566677764455555532   22    366666655566


Q ss_pred             hcccCCCChHHHHHHHhccchhhhc
Q 044025          103 KLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus       103 ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |-.  .+.+.++..+.+.|.++++.
T Consensus       162 Ny~--l~~~~l~aq~~~~gVl~tL~  184 (604)
T KOG4500|consen  162 NYI--LDSRELRAQVADAGVLNTLA  184 (604)
T ss_pred             Hhh--CCcHHHHHHHHhcccHHHHH
Confidence            652  36888899999999998764

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.51  E-value=0.023  Score=46.54  Aligned_cols=108  Identities=17%  Similarity=0.237  Sum_probs=76.7

Q ss_pred             HHHHHhhH--hHHHH-HhhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCH
Q 044025           19 TLDSNIVV--CMYTV-IVANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQ   91 (129)
Q Consensus        19 w~lsNI~~--qiq~v-i~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~   91 (129)
                      -+++++.+  ..+.+ .+.+.++.|+++|+..  +...+ +++.++==++-.+  +-...+.+.++||.+++++.. ...
T Consensus       166 ~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~--~~~~~~~~~~~i~~l~~i~k~s~KE  243 (429)
T cd00256         166 RCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP--HAAEVLKRLSLIQDLSDILKESTKE  243 (429)
T ss_pred             HHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccH--HHHHhhccccHHHHHHHHHHhhhhH
Confidence            37777777  44544 4778999999999874  55777 8776655555432  333455578999999999974 778


Q ss_pred             HHHHHHHHHHhhcccCC----CChHHHHHHHhccchhhhcC
Q 044025           92 RIVTVCLNGNRKLGMDN----RVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        92 ~~~~~aL~al~ni~~~~----~~~~~~~~i~e~ggl~~le~  128 (129)
                      +++++++-++.|+....    ....+...+.++|.+..+..
T Consensus       244 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~  284 (429)
T cd00256         244 KVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS  284 (429)
T ss_pred             HHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence            99999999999985321    13345667888888776543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.40  E-value=0.026  Score=35.13  Aligned_cols=62  Identities=16%  Similarity=0.167  Sum_probs=46.4

Q ss_pred             HHHHH-HHHHHhhH---hHHHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025           14 KLKEN-TLDSNIVV---CMYTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus        14 ~~r~~-w~lsNI~~---qiq~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      .+|.+ |++.||++   -++-+-+.+++|.++++..+ +-..+| =|.|+++=++..  .+=.+.|-+.|
T Consensus         3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~~g   70 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHHcC
Confidence            45655 99999999   56656678999999999885 577899 999999888874  23344444444

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=96.18  E-value=0.13  Score=43.98  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=70.9

Q ss_pred             ChHHHH-HHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH-
Q 044025           11 PLSKLK-ENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL-   82 (129)
Q Consensus        11 ~~~~~r-~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l-   82 (129)
                      |-.+.. .+. ++.|+.-    .-...+..|.+..+...+.+.|+.+| .+.|++.|..-+.. +..+......+-..+ 
T Consensus       431 p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d-e~~k~~~~~ki~a~~i  509 (678)
T KOG1293|consen  431 PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD-EEEKFQLLAKIPANLI  509 (678)
T ss_pred             cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch-HHHHHHHHHHhhHHHH
Confidence            333333 344 9999887    55678899999999999999999999 99999999998865 333333333344333 


Q ss_pred             HhhcCCCCHHHHHHHHHHHhhcc
Q 044025           83 CDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        83 ~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ..+.+.+|..++..+++-++|+.
T Consensus       510 ~~l~nd~d~~Vqeq~fqllRNl~  532 (678)
T KOG1293|consen  510 LDLINDPDWAVQEQCFQLLRNLT  532 (678)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhh
Confidence            34446799999999999999984

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.16  E-value=0.017  Score=47.29  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      +..+++|++.  ..++ ..++|.+.+++.++++.|| .|+-++..+... +|+.+.   +. .++.+..+|..+|+.++.
T Consensus        99 AL~~l~~i~~--~~~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~-~p~~~~---~~-~~~~l~~lL~d~~~~V~~  170 (526)
T PF01602_consen   99 ALRTLSNIRT--PEMA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRK-DPDLVE---DE-LIPKLKQLLSDKDPSVVS  170 (526)
T ss_dssp             HHHHHHHH-S--HHHH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CHCCHH---GG-HHHHHHHHTTHSSHHHHH
T ss_pred             HHhhhhhhcc--cchh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CHHHHH---HH-HHHHHhhhccCCcchhHH
Confidence            3358888864  2222 3378899999999999999 999999999876 444332   22 688999999889999999


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      .++.++..+
T Consensus       171 ~a~~~l~~i  179 (526)
T PF01602_consen  171 AALSLLSEI  179 (526)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=96.02  E-value=0.083  Score=45.07  Aligned_cols=98  Identities=17%  Similarity=0.027  Sum_probs=74.8

Q ss_pred             cCCCCChHHHHHHH-HHHHhhHhHHH----HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            6 KNPKLPLSKLKENT-LDSNIVVCMYT----VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         6 ~~~~~~~~~~r~~w-~lsNI~~qiq~----vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      ++|--+..+.+++. ++-+.++.+.+    .-+..+..+|++++..++..++ -+.-|++|++-.=+ .--..++..|.|
T Consensus       385 ~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngI  463 (678)
T KOG1293|consen  385 LPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGI  463 (678)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcH
Confidence            33434445555444 77777663322    2245778899999999999999 99999999997533 223567889999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           80 KPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        80 ~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..+.+++...|+......+|++++.
T Consensus       464 d~l~s~~~~~~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  464 DILESMLTDPDFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999986

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.84  E-value=0.02  Score=44.54  Aligned_cols=87  Identities=18%  Similarity=0.240  Sum_probs=60.7

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC----CCCHHHHHHHHHHHhhcccCCCC
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV----CSDQRIVTVCLNGNRKLGMDNRV  110 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~----~~d~~~~~~aL~al~ni~~~~~~  110 (129)
                      ...++..+++++|.-++ -|+..++.+...+...... .. .++++.+.+.|.    +++...+..+++++.++.+   .
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~-~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~---~  180 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEK-LV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR---S  180 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HH-HH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT---S
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccc-hH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC---c
Confidence            67888889999999999 9999999999876533222 11 345566666554    4667788999999999864   7


Q ss_pred             hHHHHHHHhccchhhhc
Q 044025          111 NVYTQMINECDGLDKIE  127 (129)
Q Consensus       111 ~~~~~~i~e~ggl~~le  127 (129)
                      ++|+..+-+.||+..+-
T Consensus       181 ~~~R~~f~~~~~v~~l~  197 (312)
T PF03224_consen  181 KEYRQVFWKSNGVSPLF  197 (312)
T ss_dssp             HHHHHHHHTHHHHHHHH
T ss_pred             chhHHHHHhcCcHHHHH
Confidence            88999998888887653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.83  E-value=0.11  Score=37.12  Aligned_cols=92  Identities=14%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC-hHHHHhhcCCCCHHHHHH
Q 044025           20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY-IKPLCDLLVCSDQRIVTV   96 (129)
Q Consensus        20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~-i~~l~~lL~~~d~~~~~~   96 (129)
                      +++-++. .-..+  ...+|.+...|+++++.+| .|.-+++++...+-      +--.|- +..+..++..+|+++...
T Consensus        11 ~l~DL~~r~~~~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~l~D~~~~Ir~~   82 (178)
T PF12717_consen   11 ALGDLCIRYPNLV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKLLVDENPEIRSL   82 (178)
T ss_pred             HHHHHHHhCcHHH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHHHcCCCHHHHHH
Confidence            7777765 32223  5678999999999999999 99999999987632      111233 377778888899999999


Q ss_pred             HHHHHhhcccCCCChHHHHHHHh
Q 044025           97 CLNGNRKLGMDNRVNVYTQMINE  119 (129)
Q Consensus        97 aL~al~ni~~~~~~~~~~~~i~e  119 (129)
                      |...+..+.+....+.+...+.+
T Consensus        83 A~~~~~e~~~~~~~~~i~~~~~e  105 (178)
T PF12717_consen   83 ARSFFSELLKKRNPNIIYNNFPE  105 (178)
T ss_pred             HHHHHHHHHHhccchHHHHHHHH
Confidence            99999887543234545544444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.094  Score=47.08  Aligned_cols=103  Identities=13%  Similarity=0.128  Sum_probs=74.6

Q ss_pred             CcccccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHH
Q 044025            1 MVIQQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLV   74 (129)
Q Consensus         1 ~~i~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv   74 (129)
                      ||+..++.-.|....-++-+++-++.    .+|+-...-+.|.|+..+.+. .++++ .|+-|+-|..-+...+.+.--+
T Consensus       393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL  472 (1075)
T KOG2171|consen  393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL  472 (1075)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            46666755555555444459999998    688887788999999999875 77999 9999999998765444443322


Q ss_pred             hcCChH-HHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           75 SQGYIK-PLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        75 ~~g~i~-~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      + +++. .|..++.+..+.++..++-+|+.+
T Consensus       473 d-~lm~~~l~~L~~~~~~~v~e~vvtaIasv  502 (1075)
T KOG2171|consen  473 D-GLMEKKLLLLLQSSKPYVQEQAVTAIASV  502 (1075)
T ss_pred             H-HHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            2 3344 444455678899999999999875

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=95.62  E-value=0.074  Score=44.39  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=72.5

Q ss_pred             HHHhhccHHHHHHHhccCChHH--H-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhhcc
Q 044025           30 TVIVANIILLLVHLLQHAELEI--K-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        30 ~vi~~g~lp~L~~ll~~~~~~v--~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~ni~  105 (129)
                      .+-+.|-+..|+.++..++.+.  | ||+..+-.+....+   .++++..| +..++.+-.. ..+++.+.++--|+++.
T Consensus       175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN---~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAEN---RDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF  250 (832)
T ss_pred             HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhh---hhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence            3445689999999999986655  9 99999999998744   55777766 5555555443 55788888999999997


Q ss_pred             cCCCChHHHHHHHhccchhhhc
Q 044025          106 MDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus       106 ~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |  .+++.++-+.+.||+|++.
T Consensus       251 K--HSeet~~~Lvaa~~lD~vl  270 (832)
T KOG3678|consen  251 K--HSEETCQRLVAAGGLDAVL  270 (832)
T ss_pred             h--hhHHHHHHHHhhcccchhe
Confidence            6  5999999999999999864

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.52  E-value=0.038  Score=37.58  Aligned_cols=69  Identities=16%  Similarity=0.139  Sum_probs=55.3

Q ss_pred             hccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           34 ANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        34 ~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..++..|+++|. +.|+.+. =||.-|+.++.. -|. .+.++ +.|+=..++.||+++|+++...||.++..+
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~-~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH-YPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHH-Chh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            357788999994 4588888 999999999976 344 44555 679999999999999999999999999875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.50  E-value=0.095  Score=45.68  Aligned_cols=88  Identities=18%  Similarity=0.191  Sum_probs=70.8

Q ss_pred             CChHHHHHH--HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025           10 LPLSKLKEN--TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL   86 (129)
Q Consensus        10 ~~~~~~r~~--w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL   86 (129)
                      +|..++|..  .++|-+  ..++++ ..+++++.+++.++.+.|| .|+.|+.++-.- ++   ++..+.|.+..+..++
T Consensus       103 d~N~~iR~~AlR~ls~l--~~~el~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~---~l~~~~g~~~~l~~l~  175 (757)
T COG5096         103 DPNEEIRGFALRTLSLL--RVKELL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DK---DLYHELGLIDILKELV  175 (757)
T ss_pred             CCCHHHHHHHHHHHHhc--ChHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CH---hhhhcccHHHHHHHHh
Confidence            456666653  266655  555554 4688999999999999999 999999999865 22   3555789999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc
Q 044025           87 VCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        87 ~~~d~~~~~~aL~al~ni  104 (129)
                      ..+||.++..|+.++..+
T Consensus       176 ~D~dP~Vi~nAl~sl~~i  193 (757)
T COG5096         176 ADSDPIVIANALASLAEI  193 (757)
T ss_pred             hCCCchHHHHHHHHHHHh
Confidence            999999999999999877

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.43  E-value=0.046  Score=48.03  Aligned_cols=84  Identities=11%  Similarity=0.101  Sum_probs=73.6

Q ss_pred             HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025           20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC   97 (129)
Q Consensus        20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a   97 (129)
                      ++--|++ +=.+++.+|.+-..+..|..=...+| -|.-..+|+|..-.++..+++++  ++|.|+.+|...|.+.+..+
T Consensus       278 ALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~  355 (1051)
T KOG0168|consen  278 ALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESV  355 (1051)
T ss_pred             HHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHH
Confidence            5556666 66778899999999999988888999 99999999998877788899987  89999999999999999999


Q ss_pred             HHHHhhcc
Q 044025           98 LNGNRKLG  105 (129)
Q Consensus        98 L~al~ni~  105 (129)
                      +-++.+++
T Consensus       356 ~ic~~ri~  363 (1051)
T KOG0168|consen  356 CICLTRIA  363 (1051)
T ss_pred             HHHHHHHH
Confidence            99988774

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.20  E-value=0.19  Score=33.31  Aligned_cols=50  Identities=18%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             HHHH-HHHHhhH---hHHHHH-hhccHHHHHHHhc--cCChHHH-HHHHHHHHhccCC
Q 044025           16 KENT-LDSNIVV---CMYTVI-VANIILLLVHLLQ--HAELEIK-EATWAISSATYGG   65 (129)
Q Consensus        16 r~~w-~lsNI~~---qiq~vi-~~g~lp~L~~ll~--~~~~~v~-eA~wal~Ni~~~~   65 (129)
                      +.+- .++|+|.   .+|..+ +.|.+|.+...-.  ..+|-+| -|.||+-|++.+.
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n   61 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN   61 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence            4554 8999999   666655 5677888887744  4588999 9999999999983

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=95.18  E-value=0.05  Score=50.37  Aligned_cols=94  Identities=19%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             hHHHHHHH-HHHHhhH-------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025           12 LSKLKENT-LDSNIVV-------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL   82 (129)
Q Consensus        12 ~~~~r~~w-~lsNI~~-------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l   82 (129)
                      ......+- +|-|...       +-|.+-+++++..|.+.|++...-+- .+|=+|-|+..- +++.-++|.+.|+++.|
T Consensus       499 LaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mL  577 (2195)
T KOG2122|consen  499 LAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPML  577 (2195)
T ss_pred             hhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHH
Confidence            33344444 6666554       44556689999999999999999999 999999999987 66767889999999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHhhccc
Q 044025           83 CDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        83 ~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      -+|+.+.+..+..-...+|.|+.+
T Consensus       578 rnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  578 RNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             HHHHhhhhhhhhhhHHHHHHHHhc
Confidence            999988888888889999999743

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=95.16  E-value=0.17  Score=35.69  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             ccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChH
Q 044025           35 NIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNV  112 (129)
Q Consensus        35 g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~  112 (129)
                      +-+..|+.-+.. .+.+.| ...--+.|.+-+  |-...++.+..++..|++.|..+|..++...+-+|.|+.   -+..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC---~d~~   90 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC---LDKT   90 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc---cChH
Confidence            445666666665 477888 777778888875  355678889999999999999999999999999999985   2555


Q ss_pred             HHHHHHhccchhhhc
Q 044025          113 YTQMINECDGLDKIE  127 (129)
Q Consensus       113 ~~~~i~e~ggl~~le  127 (129)
                      -...|.|.+|++.+.
T Consensus        91 n~~~I~ea~g~plii  105 (173)
T KOG4646|consen   91 NAKFIREALGLPLII  105 (173)
T ss_pred             HHHHHHHhcCCceEE
Confidence            577899999987653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.02  E-value=0.026  Score=28.89  Aligned_cols=28  Identities=11%  Similarity=0.062  Sum_probs=24.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ++|.+.++++.++++++..++++++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~   28 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIA   28 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999885

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=94.95  E-value=0.1  Score=46.24  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=11.5

Q ss_pred             HHHHHhccCChHHH-HHHHHHHHh
Q 044025           39 LLVHLLQHAELEIK-EATWAISSA   61 (129)
Q Consensus        39 ~L~~ll~~~~~~v~-eA~wal~Ni   61 (129)
                      .+...|++++..+| +|+++|+.+
T Consensus       811 ~l~~aL~d~d~~VR~~Aa~aL~~l  834 (897)
T PRK13800        811 AATAALRASAWQVRQGAARALAGA  834 (897)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhc
Confidence            34444555555555 555555443

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=94.80  E-value=0.11  Score=42.89  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             hHHHHHhhc-cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-----CCHHHHHHHHH
Q 044025           27 CMYTVIVAN-IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-----SDQRIVTVCLN   99 (129)
Q Consensus        27 qiq~vi~~g-~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-----~d~~~~~~aL~   99 (129)
                      ..|.+...+ ++..+..-+.+.|.+.+ -++-+++|.+...  ++-.|+|++|.+..|+++|..     .|...+..++.
T Consensus       306 SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls  383 (604)
T KOG4500|consen  306 SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS  383 (604)
T ss_pred             HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence            567777666 89999999999999999 9999999999863  677799999999999998843     55678888999


Q ss_pred             HHhhc
Q 044025          100 GNRKL  104 (129)
Q Consensus       100 al~ni  104 (129)
                      |++|+
T Consensus       384 ALRnl  388 (604)
T KOG4500|consen  384 ALRNL  388 (604)
T ss_pred             HHHhc
Confidence            99996

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.77  E-value=0.34  Score=43.65  Aligned_cols=95  Identities=15%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             CCCChHHHHHHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHH
Q 044025            8 PKLPLSKLKENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKP   81 (129)
Q Consensus         8 ~~~~~~~~r~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~   81 (129)
                      +++...+.+++. ++|-|+.    ++...+ ..++|..+..|++++++|| -||.|++-++++=- ..++.--..-++|.
T Consensus       358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-p~iqk~~~e~l~~a  435 (1075)
T KOG2171|consen  358 QSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-PEIQKKHHERLPPA  435 (1075)
T ss_pred             cCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-HHHHHHHHHhccHH
Confidence            445556666665 9999888    333322 5788999999999999999 99999999998733 33444455568888


Q ss_pred             HHhhcCC-CCHHHHHHHHHHHhhc
Q 044025           82 LCDLLVC-SDQRIVTVCLNGNRKL  104 (129)
Q Consensus        82 l~~lL~~-~d~~~~~~aL~al~ni  104 (129)
                      |...+.+ .++++..-+.-++-|.
T Consensus       436 L~~~ld~~~~~rV~ahAa~al~nf  459 (1075)
T KOG2171|consen  436 LIALLDSTQNVRVQAHAAAALVNF  459 (1075)
T ss_pred             HHHHhcccCchHHHHHHHHHHHHH
Confidence            9998876 4567777777777654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=94.53  E-value=0.32  Score=40.79  Aligned_cols=118  Identities=9%  Similarity=0.086  Sum_probs=88.7

Q ss_pred             CCCCChHHHHHHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025            7 NPKLPLSKLKENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK   80 (129)
Q Consensus         7 ~~~~~~~~~r~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~   80 (129)
                      +...++...|..- .+.|+-.    ..|.++.+|.+..++--.+..|+++- .|+.|++|++-.+-.+--+.+++..+-.
T Consensus       231 K~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~E  310 (832)
T KOG3678|consen  231 KEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAE  310 (832)
T ss_pred             hhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhh
Confidence            3556777878765 8888887    56778999999999888888999998 9999999999776545456778777776


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      -|.-|-.+.|.-+.-.+.-+..-++   ...++-..++.+|-+.-.|
T Consensus       311 WLF~LA~skDel~R~~AClAV~vla---t~KE~E~~VrkS~TlaLVE  354 (832)
T KOG3678|consen  311 WLFPLAFSKDELLRLHACLAVAVLA---TNKEVEREVRKSGTLALVE  354 (832)
T ss_pred             hhhhhhcchHHHHHHHHHHHHhhhh---hhhhhhHHHhhccchhhhh
Confidence            6666666677777666777777664   2556666777777765544

>PF05536 Neurochondrin: Neurochondrin

Probab=94.38  E-value=0.29  Score=41.25  Aligned_cols=89  Identities=19%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             ChHHHHHH-HHHHHhhH--hH---HHHHhhccHHHHHHHhccCCh-HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025           11 PLSKLKEN-TLDSNIVV--CM---YTVIVANIILLLVHLLQHAEL-EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL   82 (129)
Q Consensus        11 ~~~~~r~~-w~lsNI~~--qi---q~vi~~g~lp~L~~ll~~~~~-~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l   82 (129)
                      +..++.-+ ..++-.|+  .+   .++  -+-+|.|++++.+.+. .+. +|.-+|..++.  +++=.+.+++.|.++.|
T Consensus        70 ~~~~~~LavsvL~~f~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias--~~~G~~aLl~~g~v~~L  145 (543)
T PF05536_consen   70 PEEYLSLAVSVLAAFCRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIAS--SPEGAKALLESGAVPAL  145 (543)
T ss_pred             HHHHHHHHHHHHHHHcCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc--CcHhHHHHHhcCCHHHH
Confidence            34554444 37777777  22   334  4689999999988766 888 99999999994  44667889999999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHhhc
Q 044025           83 CDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        83 ~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ++.+.. .+.....++..+.++
T Consensus       146 ~ei~~~-~~~~~E~Al~lL~~L  166 (543)
T PF05536_consen  146 CEIIPN-QSFQMEIALNLLLNL  166 (543)
T ss_pred             HHHHHh-CcchHHHHHHHHHHH
Confidence            999875 666677777777665

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=94.09  E-value=0.55  Score=31.05  Aligned_cols=54  Identities=17%  Similarity=0.106  Sum_probs=43.1

Q ss_pred             HH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC--CCCHHHHHHHHHHHhhcc
Q 044025           51 IK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV--CSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        51 v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~--~~d~~~~~~aL~al~ni~  105 (129)
                      .| +..-.|+|++.. ++.--..+.+.|.||.+++.-.  ..+|-+.+-++++|+|+.
T Consensus         2 ~K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~   58 (102)
T PF09759_consen    2 FKRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLC   58 (102)
T ss_pred             cHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence            46 788899999987 5454456668899999998654  467999999999999984

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.04  E-value=0.58  Score=39.38  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             HHHHHH-HHHHhhH--hH-HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           14 KLKENT-LDSNIVV--CM-YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        14 ~~r~~w-~lsNI~~--qi-q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      .+|.+. .+-|++.  .. .+..+.+++..|+..|...+++.- -..--+--+.--+.  .-..+.+.|++..|..+...
T Consensus       279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e--NK~~M~~~~iveKL~klfp~  356 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE--NKIVMEQNGIVEKLLKLFPI  356 (791)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc--chHHHHhccHHHHHHHhcCC
Confidence            456665 8889988  32 234578999999999999988887 65555555554332  22345678999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      ++++++...+.-+-|+.   ++-..+..+...|.++++-.
T Consensus       357 ~h~dL~~~tl~LlfNlS---FD~glr~KMv~~GllP~l~~  393 (791)
T KOG1222|consen  357 QHPDLRKATLMLLFNLS---FDSGLRPKMVNGGLLPHLAS  393 (791)
T ss_pred             CCHHHHHHHHHHhhhcc---ccccccHHHhhccchHHHHH
Confidence            99999999999988874   34444556778888887643

>PTZ00429 beta-adaptin; Provisional

Probab=93.97  E-value=0.3  Score=42.73  Aligned_cols=87  Identities=10%  Similarity=0.084  Sum_probs=65.7

Q ss_pred             hHHHHHH--HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           12 LSKLKEN--TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        12 ~~~~r~~--w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      ....|..  .++|+|-  ...++ .-+++.+.+.+.+.++.|| .|+.++..+... +++   .+.+.|.++.+.++|..
T Consensus       118 Np~IRaLALRtLs~Ir--~~~i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~-~pe---lv~~~~~~~~L~~LL~D  190 (746)
T PTZ00429        118 SPVVRALAVRTMMCIR--VSSVL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD-DMQ---LFYQQDFKKDLVELLND  190 (746)
T ss_pred             CHHHHHHHHHHHHcCC--cHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-Ccc---cccccchHHHHHHHhcC
Confidence            3445543  3777774  33332 2366778888999999999 999999999875 433   23456888999999999


Q ss_pred             CCHHHHHHHHHHHhhcc
Q 044025           89 SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~  105 (129)
                      +|+.++..|+.++..+.
T Consensus       191 ~dp~Vv~nAl~aL~eI~  207 (746)
T PTZ00429        191 NNPVVASNAAAIVCEVN  207 (746)
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            99999999999998874

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.26  Score=41.74  Aligned_cols=87  Identities=17%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             HHH--HHHHhhHhH----HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCC
Q 044025           17 ENT--LDSNIVVCM----YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS   89 (129)
Q Consensus        17 ~~w--~lsNI~~qi----q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~   89 (129)
                      .+|  ++--+++.+    --+.+..+...|+++|++++..+. -+.-++||...--+ ..-..+++.|+|..+.+++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fs-nL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFS-NLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeecc-chHHHHHHhhHHHHHHHHhhcc
Confidence            455  444555511    124578899999999999999999 99999999987644 2334677999999999999999


Q ss_pred             CHHHHHHHHHHHhhc
Q 044025           90 DQRIVTVCLNGNRKL  104 (129)
Q Consensus        90 d~~~~~~aL~al~ni  104 (129)
                      |..++...+|.++++
T Consensus       486 DdaLqans~wvlrHl  500 (743)
T COG5369         486 DDALQANSEWVLRHL  500 (743)
T ss_pred             hhhhhhcchhhhhhh
Confidence            999999999999976

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.60  E-value=1  Score=36.73  Aligned_cols=87  Identities=17%  Similarity=-0.032  Sum_probs=67.0

Q ss_pred             CCChHHHHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025            9 KLPLSKLKENT-LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus         9 ~~~~~~~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      +......|-++ +++.+.. .-+..+  =++..+..=|.++++.+| -|..+++|+.+   ++-.+.     +++.+..+
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~~~~~~--l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~~-----l~~~v~~l  122 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHEDPELLI--LIINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAEP-----LIPDVIKL  122 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSHHHHH--HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHHH-----HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhcchhHHH--HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhhH-----HHHHHHHH
Confidence            66677777777 8888887 333221  156677777889999999 99999999984   355544     47888999


Q ss_pred             cCCCCHHHHHHHHHHHhhcc
Q 044025           86 LVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~  105 (129)
                      |.++++.+++.|+-++.++.
T Consensus       123 l~~~~~~VRk~A~~~l~~i~  142 (526)
T PF01602_consen  123 LSDPSPYVRKKAALALLKIY  142 (526)
T ss_dssp             HHSSSHHHHHHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHh
Confidence            99999999999999998874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=93.50  E-value=0.92  Score=32.08  Aligned_cols=83  Identities=10%  Similarity=-0.019  Sum_probs=65.5

Q ss_pred             HHHHhhH-hH--HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           20 LDSNIVV-CM--YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        20 ~lsNI~~-qi--q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      -+.|.+- ++  ..+-..+++..+++.|+..+.... -+.-.+||+|.+.  ...+.+++++-+|..+..+.+.....+.
T Consensus        40 NLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~--~n~~~I~ea~g~plii~~lssp~e~tv~  117 (173)
T KOG4646|consen   40 NLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK--TNAKFIREALGLPLIIFVLSSPPEITVH  117 (173)
T ss_pred             HHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh--HHHHHHHHhcCCceEEeecCCChHHHHH
Confidence            4455544 33  334567899999999999999999 9999999999864  4567888999999999999887777777


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      .++-++..+
T Consensus       118 sa~~~l~~l  126 (173)
T KOG4646|consen  118 SAALFLQLL  126 (173)
T ss_pred             HHHHHHHHh
Confidence            777777554

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=92.89  E-value=0.45  Score=44.56  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=61.2

Q ss_pred             HhhccHHHHHHHhccCC---hHHH-HHHHHHHHhccCCCHHHHHHHHhcCC------hHHHHhhc----CC-----CCHH
Q 044025           32 IVANIILLLVHLLQHAE---LEIK-EATWAISSATYGGSHEHIQFLVSQGY------IKPLCDLL----VC-----SDQR   92 (129)
Q Consensus        32 i~~g~lp~L~~ll~~~~---~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~------i~~l~~lL----~~-----~d~~   92 (129)
                      ...|.+|.|+++|..+|   .+.| +|--+|-|++.. .+++-+.=-+..+      |...|..+    ..     .+..
T Consensus       232 R~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhS-qPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~  310 (2195)
T KOG2122|consen  232 RRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHS-QPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPAS  310 (2195)
T ss_pred             HhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhc-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            35899999999999754   4778 999999999986 3332111111112      22223322    21     2223


Q ss_pred             HHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           93 IVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        93 ~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      .......|+.-+-|..++++|+..+-|.|||..|-+|
T Consensus       311 ~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeL  347 (2195)
T KOG2122|consen  311 DEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAEL  347 (2195)
T ss_pred             cchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHH
Confidence            3344444555554556899999999999999987553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.74  E-value=1.2  Score=39.21  Aligned_cols=105  Identities=23%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             HHHHhhH----hHHHHH-h-hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-CChHHHHhhcCC---
Q 044025           20 LDSNIVV----CMYTVI-V-ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-GYIKPLCDLLVC---   88 (129)
Q Consensus        20 ~lsNI~~----qiq~vi-~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-g~i~~l~~lL~~---   88 (129)
                      .+|++-+    +.|..+ . .-.+..++.+|.+.-.-+| ||..-|+-++.+ + .+++.+|.. +++..|.+++..   
T Consensus       145 Llsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~-n-~~IQKlVAFENaFerLfsIIeeEGg  222 (970)
T KOG0946|consen  145 LLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD-N-SSIQKLVAFENAFERLFSIIEEEGG  222 (970)
T ss_pred             HHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc-C-chHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6677666    455543 2 4678899999999999999 999999999987 4 578888864 899999999964   


Q ss_pred             CCH-HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           89 SDQ-RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        89 ~d~-~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      .|. -++.-||.-+-|+.|.+.+|  ...+.|.+.++++..
T Consensus       223 ~dGgIVveDCL~ll~NLLK~N~SN--Q~~FrE~~~i~rL~k  261 (970)
T KOG0946|consen  223 LDGGIVVEDCLILLNNLLKNNISN--QNFFREGSYIPRLLK  261 (970)
T ss_pred             CCCcchHHHHHHHHHHHHhhCcch--hhHHhccccHHHHHh
Confidence            343 56677888888886543333  456888888888764

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=91.61  E-value=0.93  Score=29.51  Aligned_cols=46  Identities=13%  Similarity=0.055  Sum_probs=34.1

Q ss_pred             HHHHHHHhhH-hHHHHHh--hccHHHHHHHhccCChHHHHHHHHHHHhc
Q 044025           17 ENTLDSNIVV-CMYTVIV--ANIILLLVHLLQHAELEIKEATWAISSAT   62 (129)
Q Consensus        17 ~~w~lsNI~~-qiq~vi~--~g~lp~L~~ll~~~~~~v~eA~wal~Ni~   62 (129)
                      ++-++-||+. .-..++.  ..+++.|..+....|+.||.+++.+-++.
T Consensus        47 AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   47 ACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence            3349999998 3333333  57889999999999999996667776654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=91.54  E-value=0.48  Score=42.11  Aligned_cols=61  Identities=18%  Similarity=0.057  Sum_probs=37.1

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ...+|.|..+|++++..+| .|+-+|..+....           ...+.+...|.++|+.++..++++|+.+.
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~  712 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----------PPAPALRDHLGSPDPVVRAAALDVLRALR  712 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----------CchHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence            3455555555555555555 5555554442210           12356677777788888888888887763

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.92  E-value=0.7  Score=38.91  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CCCCChHHHHHHH-HHHHhhH---hHHHHH-hhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            7 NPKLPLSKLKENT-LDSNIVV---CMYTVI-VANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         7 ~~~~~~~~~r~~w-~lsNI~~---qiq~vi-~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      +-+++-+|.-+|. ++.|++.   .-..++ +.+++|.+-+.|.-+  +.+.. +..-+++-++.+.  ....-+..+|+
T Consensus       514 ~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~--~cA~Lla~a~~  591 (791)
T KOG1222|consen  514 KNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL--DCARLLAPAKL  591 (791)
T ss_pred             hcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh--HHHHHhCcccc
Confidence            3455667777886 9999887   445555 579999999999875  67788 9998888887763  34445557899


Q ss_pred             hHHHHhhcCC--CCHHHHHHHHHHHhhc
Q 044025           79 IKPLCDLLVC--SDQRIVTVCLNGNRKL  104 (129)
Q Consensus        79 i~~l~~lL~~--~d~~~~~~aL~al~ni  104 (129)
                      |+.|+++|+.  .|.+++.+++.....+
T Consensus       592 i~tlieLL~a~QeDDEfV~QiiyVF~Q~  619 (791)
T KOG1222|consen  592 IDTLIELLQACQEDDEFVVQIIYVFLQF  619 (791)
T ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence            9999999975  6667766666665443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.69  E-value=1.3  Score=28.57  Aligned_cols=67  Identities=9%  Similarity=0.021  Sum_probs=53.2

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      .+...+..+.++.+-+| ++..-|+.++...+    ..+. -.+++..+.+.|..+|+-+--.|.+++..++.
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~   72 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD   72 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            34556777888999999 99999999998754    1111 24678889999999999999999999988764

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.51  E-value=0.52  Score=40.84  Aligned_cols=77  Identities=17%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc--CChHHHHhhcCCCCHHHHH
Q 044025           20 LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ--GYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        20 ~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~--g~i~~l~~lL~~~d~~~~~   95 (129)
                      +++|+-. ++-.+    ++|.|-+.|.+.+..+| .+..|++.++-|.-    ++++..  .++|.|..+|....+-++.
T Consensus       381 VLanvf~~elL~~----l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----~g~~p~LpeLip~l~~~L~DKkplVRs  452 (885)
T KOG2023|consen  381 VLANVFGDELLPI----LLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----QGFVPHLPELIPFLLSLLDDKKPLVRS  452 (885)
T ss_pred             HHHHhhHHHHHHH----HHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----hhcccchHHHHHHHHHHhccCccceee
Confidence            6777754 33333    78888888999999999 99999999998853    344432  4789999999988898999


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      ...|++++-
T Consensus       453 ITCWTLsRy  461 (885)
T KOG2023|consen  453 ITCWTLSRY  461 (885)
T ss_pred             eeeeeHhhh
Confidence            999999875

>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT)

Probab=88.54  E-value=0.93  Score=35.12  Aligned_cols=55  Identities=27%  Similarity=0.311  Sum_probs=44.4

Q ss_pred             hhccHHHHHHHhccCChHHH-HHHHHHHHhccCC------CHHHHH-------HHHhcCChHHHHhhcC
Q 044025           33 VANIILLLVHLLQHAELEIK-EATWAISSATYGG------SHEHIQ-------FLVSQGYIKPLCDLLV   87 (129)
Q Consensus        33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~------~~~~i~-------~lv~~g~i~~l~~lL~   87 (129)
                      +...+..+++-|.+++...| +|+-+|.+++.|.      ..+|++       .+.+.|+++++.++|.
T Consensus        58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~  126 (293)
T PF07923_consen   58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK  126 (293)
T ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            35677889999999999999 9999999999883      245554       3447899999999885

This encodes an acidic polypeptide with several possible transmembrane regions [].

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.51  E-value=1.4  Score=38.46  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      -+.-++...++++++.+| -|+-.+.++-.- +   .+...+.|.++.|.+++..+||.++.+|+.++..|.
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~-~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~  188 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI-D---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIH  188 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcC-C---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            466788899999999999 999888888775 2   345668899999999999999999999999999874

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=88.37  E-value=1.7  Score=33.58  Aligned_cols=59  Identities=22%  Similarity=0.277  Sum_probs=42.3

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni  104 (129)
                      .-.+|.+.+++.+.++.+| .|+++++++-..   +         .++++..+|. +.+..++..+.++|+.+
T Consensus        73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~---------a~~~li~~l~~d~~~~vR~~aa~aL~~~  133 (335)
T COG1413          73 EEAVPLLRELLSDEDPRVRDAAADALGELGDP---E---------AVPPLVELLENDENEGVRAAAARALGKL  133 (335)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---h---------HHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence            3467777788888888888 888877655432   2         4566777776 47788888888888776

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=88.31  E-value=2.7  Score=32.27  Aligned_cols=71  Identities=15%  Similarity=0.138  Sum_probs=48.8

Q ss_pred             HHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           54 ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        54 A~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |.-+|--++-- .|.--..+-+...+..|+++|. ...+.+...+|+++-.+.  -+.......+|+++|+..+-
T Consensus       111 aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iL--ld~p~N~r~FE~~~Gl~~v~  182 (257)
T PF08045_consen  111 ALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCIL--LDSPENQRDFEELNGLSTVC  182 (257)
T ss_pred             HHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHH--HcChHHHHHHHHhCCHHHHH
Confidence            33444444432 2333334557789999999995 467889999999998763  23555566899999998764

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=87.99  E-value=6.5  Score=36.49  Aligned_cols=103  Identities=22%  Similarity=0.125  Sum_probs=75.8

Q ss_pred             HHHHHHhhH---hHHHHHh-----hccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025           18 NTLDSNIVV---CMYTVIV-----ANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV   87 (129)
Q Consensus        18 ~w~lsNI~~---qiq~vi~-----~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~   87 (129)
                      ..++.|+..   ..-.|+-     -|.+|.+..++.. ++++++ =|.-+++-+++.  .+.+..+++.|++..|..+| 
T Consensus      1746 LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lL- 1822 (2235)
T KOG1789|consen 1746 LTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLL- 1822 (2235)
T ss_pred             HHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHH-
Confidence            358999877   3333332     3788888888775 688999 888888777765  37888999999999999987 


Q ss_pred             CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025           88 CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus        88 ~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      ++-|+.+.-+|+.+..+..   +.+....-.+.||+..|
T Consensus      1823 HS~PS~R~~vL~vLYAL~S---~~~i~keA~~hg~l~yi 1858 (2235)
T KOG1789|consen 1823 HSQPSMRARVLDVLYALSS---NGQIGKEALEHGGLMYI 1858 (2235)
T ss_pred             hcChHHHHHHHHHHHHHhc---CcHHHHHHHhcCchhhh
Confidence            5688999999999987742   44455555666766544

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=87.60  E-value=3.6  Score=33.23  Aligned_cols=95  Identities=16%  Similarity=0.123  Sum_probs=66.3

Q ss_pred             hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh---cCCCCHHHHH-HHHHHH
Q 044025           27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL---LVCSDQRIVT-VCLNGN  101 (129)
Q Consensus        27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l---L~~~d~~~~~-~aL~al  101 (129)
                      .|+-|++++++|.++..+.+.|.++- .|.-.++.++-.  ++-...+++.+.+.++..-   .+++|  +.+ .+++-|
T Consensus       120 eillvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcnd--iaRvRVleLI  195 (524)
T KOG4413|consen  120 EILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCND--IARVRVLELI  195 (524)
T ss_pred             HHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhhh--HHHHHHHHHH
Confidence            67888999999999999999999999 999999999874  4566677777777766553   23333  222 245555


Q ss_pred             hhcccCCCChHHHHHHHhccchhhhc
Q 044025          102 RKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus       102 ~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      -.+.  .-+.........+|.++-++
T Consensus       196 ieif--SiSpesaneckkSGLldlLe  219 (524)
T KOG4413|consen  196 IEIF--SISPESANECKKSGLLDLLE  219 (524)
T ss_pred             HHHH--hcCHHHHhHhhhhhHHHHHH
Confidence            4442  23455555666677776655

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=87.45  E-value=9.3  Score=27.95  Aligned_cols=85  Identities=12%  Similarity=-0.029  Sum_probs=57.9

Q ss_pred             HHHHHhhH---hHHHHH----------------hhccHHHHHHHhcc------CChHHH-HHHHHHHHhccCCCHHHHHH
Q 044025           19 TLDSNIVV---CMYTVI----------------VANIILLLVHLLQH------AELEIK-EATWAISSATYGGSHEHIQF   72 (129)
Q Consensus        19 w~lsNI~~---qiq~vi----------------~~g~lp~L~~ll~~------~~~~v~-eA~wal~Ni~~~~~~~~i~~   72 (129)
                      -.|||+|+   -...++                ....+..|++.+..      ...+-- -.+.+++|++.-  ++-.++
T Consensus        17 MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~--~~gR~~   94 (192)
T PF04063_consen   17 MLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL--PEGRQF   94 (192)
T ss_pred             HHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC--HHHHHH
Confidence            39999999   222232                23477888888877      233334 889999999986  344556


Q ss_pred             HHhc--CC--hHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           73 LVSQ--GY--IKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        73 lv~~--g~--i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +++.  +.  +..+.....+.+..=+.-++.+|.|..
T Consensus        95 ~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNcc  131 (192)
T PF04063_consen   95 FLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCC  131 (192)
T ss_pred             HhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhh
Confidence            6643  45  777777777776555666888999974

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=87.35  E-value=4  Score=33.55  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             hccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCC-----CHHHHHHHHHHHhhcccCCCChHHHHHH
Q 044025           44 LQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS-----DQRIVTVCLNGNRKLGMDNRVNVYTQMI  117 (129)
Q Consensus        44 l~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~-----d~~~~~~aL~al~ni~~~~~~~~~~~~i  117 (129)
                      ....+.++. ||.-+|+|+.-. ++.-.+.+++.|..+.++..|...     +.++.-..++-+- +......+...+.+
T Consensus        41 ~~~~~~~v~~EALKCL~N~lf~-s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLF-LlTa~~~~~~~~L~  118 (446)
T PF10165_consen   41 FESPDPDVSREALKCLCNALFL-SPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLF-LLTALRPDDRKKLI  118 (446)
T ss_pred             ccCCChHHHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHH-HHhcCChhHHHHHH
Confidence            445688999 999999999987 445446778999999999999754     3444333333221 11112344555677


Q ss_pred             Hhccchhhh
Q 044025          118 NECDGLDKI  126 (129)
Q Consensus       118 ~e~ggl~~l  126 (129)
                      .+.+|++.|
T Consensus       119 ~e~~~~~~l  127 (446)
T PF10165_consen  119 EEHHGVELL  127 (446)
T ss_pred             HHhhhHHHH
Confidence            777776654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=87.18  E-value=1.3  Score=36.34  Aligned_cols=68  Identities=22%  Similarity=0.190  Sum_probs=56.1

Q ss_pred             ccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           35 NIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        35 g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      .++..|+++|+ +.|+.+. =||.-|+..+.. .|. -+.++ +.|+=..++.+|+++|+++...||.|+..+
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~-~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl  423 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRH-YPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL  423 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHH-Ccc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            46778899995 5688888 999999999976 333 34455 579999999999999999999999999876

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=87.15  E-value=1.9  Score=30.38  Aligned_cols=76  Identities=11%  Similarity=0.117  Sum_probs=57.1

Q ss_pred             hHHHHHhhccHHHHHHHhcc---------CChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhcCCCCHHHHH
Q 044025           27 CMYTVIVANIILLLVHLLQH---------AELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        27 qiq~vi~~g~lp~L~~ll~~---------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL~~~d~~~~~   95 (129)
                      =++.+++.|.+..|+++|..         .+.+.. ++..++-.+....  .=...+++ .++++.++..|.++++++..
T Consensus        99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~--~G~~~v~~~~~~v~~i~~~L~s~~~~~r~  176 (187)
T PF06371_consen   99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK--YGLEAVLSHPDSVNLIALSLDSPNIKTRK  176 (187)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH--HHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH--HHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence            46778888888888888774         244678 9999998888752  33566774 69999999999999999999


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      .+++-|.-+
T Consensus       177 ~~leiL~~l  185 (187)
T PF06371_consen  177 LALEILAAL  185 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999877643

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.09  E-value=1.5  Score=29.85  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=27.8

Q ss_pred             HHHHH-hhccHHHHHHHhccCChHHH-HHHHHHHHhc
Q 044025           28 MYTVI-VANIILLLVHLLQHAELEIK-EATWAISSAT   62 (129)
Q Consensus        28 iq~vi-~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~   62 (129)
                      -..++ +.|+=..+++++.++|++|| ||.-|+.-+.
T Consensus        78 gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   78 GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            34445 57999999999999999999 9998886553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=87.06  E-value=2.6  Score=38.11  Aligned_cols=61  Identities=13%  Similarity=0.029  Sum_probs=41.1

Q ss_pred             CCCCChHHHHHHH-HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH
Q 044025            7 NPKLPLSKLKENT-LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSH   67 (129)
Q Consensus         7 ~~~~~~~~~r~~w-~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~   67 (129)
                      +|+++.+..-.+. ++..+.+...-.-..++...+++.++++..+++ .|++|+++++.|..+
T Consensus       828 s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~  890 (1233)
T KOG1824|consen  828 SPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP  890 (1233)
T ss_pred             CCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH
Confidence            4566555444443 777776611111113444578899999999999 999999999998543

>TIGR02270 conserved hypothetical protein

Probab=86.70  E-value=3  Score=34.07  Aligned_cols=57  Identities=18%  Similarity=0.003  Sum_probs=38.7

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..+.+..+|++.++.+| +|+.+++.+-..            ..++.|...+.+.|+.+...++.++..+
T Consensus       148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       148 PGPALEAALTHEDALVRAAALRALGELPRR------------LSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence            34556666666666666 666666555432            2555666778889999999999998766

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=86.59  E-value=3.5  Score=31.84  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ..++.+...+.+.++.+| .|+|+++.+-.-            -++|.+..+|...++.++..+..+++++.
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDEDPRVRDAAADALGELG  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCCHHHHHHHHHHHHccC
Confidence            478899999999999999 999996544321            26789999999999999999999999874

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.46  E-value=0.57  Score=40.48  Aligned_cols=73  Identities=15%  Similarity=0.059  Sum_probs=56.8

Q ss_pred             hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           27 CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        27 qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +-..+|.+|+...++.-|.+.-++|| .|+..++.++.. +|.-..     .++..|+++++.+...++..++.++..|.
T Consensus       365 ~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is  438 (823)
T KOG2259|consen  365 EEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMIS  438 (823)
T ss_pred             cccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            34457889999999999999999999 999999999986 333222     25667888888877888888888887664

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=86.45  E-value=4.9  Score=28.21  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             HHhhccHHHHHHHhc--cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-CCCHH-HHHHHHHHHh
Q 044025           31 VIVANIILLLVHLLQ--HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-CSDQR-IVTVCLNGNR  102 (129)
Q Consensus        31 vi~~g~lp~L~~ll~--~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~~d~~-~~~~aL~al~  102 (129)
                      +...|+.+.+..+..  +.+..++ .++-+++..|..   +..+..+....++-|.+++. ++|.. +...++=+|-
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            346899999999999  7888999 999999999986   44556666678889999885 45555 5555555543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PTZ00429 beta-adaptin; Provisional

Probab=86.32  E-value=2.9  Score=36.73  Aligned_cols=48  Identities=13%  Similarity=-0.023  Sum_probs=38.6

Q ss_pred             HHHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025           17 ENTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG   64 (129)
Q Consensus        17 ~~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~   64 (129)
                      ++.++..+-. .-+.+.+.|.++.|.++|.+.|+.|. .|.-++..+...
T Consensus       160 Aalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        160 AAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            4468888876 22334467999999999999999999 999999999754

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.32  E-value=2.5  Score=35.90  Aligned_cols=61  Identities=18%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHH
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGN  101 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al  101 (129)
                      .++-.+.+|....|..|| .|.-.|..+|.+ +++.+..+     ...|+.||.+.|+.-+..+=++|
T Consensus        59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL  120 (556)
T PF05918_consen   59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-NPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSL  120 (556)
T ss_dssp             HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHH-----HHHHHHHTT---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-HHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHH
Confidence            466778899999999999 999999999998 66777654     45888899888876555555555

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=86.27  E-value=2.5  Score=34.17  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=60.3

Q ss_pred             HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           28 MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        28 iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      -|.++ .-++|.+++-.+..+...| ...-|++++..+ .|.++ ++-+ ..++|.+.+-|..+|+.+...+|+++..+.
T Consensus       317 kQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~-vP~~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l  393 (415)
T PF12460_consen  317 KQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKN-VPKSV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL  393 (415)
T ss_pred             hHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-CCHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            45555 4588999999999888899 999999999997 45443 2222 368999999999999999999999998874

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=86.20  E-value=1.4  Score=37.06  Aligned_cols=96  Identities=10%  Similarity=-0.074  Sum_probs=54.7

Q ss_pred             CChHHHHHHHHHHHhhH-----------hHHHHHhhccHHHHHHHhc---cCChHHH-HHHHHHHHhccCCCH--HHHHH
Q 044025           10 LPLSKLKENTLDSNIVV-----------CMYTVIVANIILLLVHLLQ---HAELEIK-EATWAISSATYGGSH--EHIQF   72 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~-----------qiq~vi~~g~lp~L~~ll~---~~~~~v~-eA~wal~Ni~~~~~~--~~i~~   72 (129)
                      .-+..-|++|+++||++           +...+ -.-.+..+...-.   -..++|+ .|..++.|+..--.+  +-...
T Consensus       446 ~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~  524 (728)
T KOG4535|consen  446 SLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFA  524 (728)
T ss_pred             hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHH
Confidence            34456678899999998           12222 2334444444422   2477899 999999887643100  00011


Q ss_pred             HHhcCChHHHHhhc-CCCCHHHHHHHHHHHhhccc
Q 044025           73 LVSQGYIKPLCDLL-VCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        73 lv~~g~i~~l~~lL-~~~d~~~~~~aL~al~ni~~  106 (129)
                      .+..|.+..+.+-. .....++.=++..+++|+.+
T Consensus       525 e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk  559 (728)
T KOG4535|consen  525 EIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK  559 (728)
T ss_pred             HHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence            12223333333322 33567888899999999854

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.60  E-value=5.1  Score=30.93  Aligned_cols=107  Identities=13%  Similarity=0.047  Sum_probs=71.4

Q ss_pred             HHHHHHHhhH---hHHHH-HhhccH----HHHHHHhccCCh-HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025           17 ENTLDSNIVV---CMYTV-IVANII----LLLVHLLQHAEL-EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL   86 (129)
Q Consensus        17 ~~w~lsNI~~---qiq~v-i~~g~l----p~L~~ll~~~~~-~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL   86 (129)
                      ++.++--..+   .++.. +++.+-    |.|..-.++..+ -.| -+.=+|+.+...++.+-++++...+++|.....+
T Consensus        98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim  177 (293)
T KOG3036|consen   98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM  177 (293)
T ss_pred             HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence            3444444444   34443 355443    444444444444 557 9999999999998888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc-ccCCCChHHHHHHHhccch
Q 044025           87 VCSDQRIVTVCLNGNRKL-GMDNRVNVYTQMINECDGL  123 (129)
Q Consensus        87 ~~~d~~~~~~aL~al~ni-~~~~~~~~~~~~i~e~ggl  123 (129)
                      .....--..++...++.| .+..|.+..|+..+....+
T Consensus       178 e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av  215 (293)
T KOG3036|consen  178 ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAV  215 (293)
T ss_pred             hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHH
Confidence            876666666777777776 3344666667666554433

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=85.59  E-value=7.7  Score=31.94  Aligned_cols=94  Identities=16%  Similarity=0.267  Sum_probs=67.0

Q ss_pred             hhccHHHHHHHh-c-cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHhhcccCC
Q 044025           33 VANIILLLVHLL-Q-HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDN  108 (129)
Q Consensus        33 ~~g~lp~L~~ll-~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~  108 (129)
                      .++-+..++..+ + ..++.+| +.++++==++-.  +.-.+++-..+.|+.+.+++.. ...++.+.++-++.|+...+
T Consensus       196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn--~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~  273 (442)
T KOG2759|consen  196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN--PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG  273 (442)
T ss_pred             ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC--HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            456666777777 3 3588888 777776666654  3445556567999999999975 67899999999999984321


Q ss_pred             ----CChHHHHHHHhccchhhhcC
Q 044025          109 ----RVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus       109 ----~~~~~~~~i~e~ggl~~le~  128 (129)
                          .....+..+..|+.++.++.
T Consensus       274 ~~~~~~k~~~~~mv~~~v~k~l~~  297 (442)
T KOG2759|consen  274 PDRETKKDIASQMVLCKVLKTLQS  297 (442)
T ss_pred             chhhHHHHHHHHHHhcCchHHHHH
Confidence                12355567888888877654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=85.56  E-value=6.2  Score=28.45  Aligned_cols=61  Identities=11%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCC--CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGG--SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~--~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      -++.+.++..+.+..+| -|.-.+.-+...|  +|.+        ++|.++-|..++++.+...|...+..+
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~--------cvp~lIAL~ts~~~~ir~~A~~~l~~l   72 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ--------CVPTLIALETSPNPSIRSRAYQLLKEL   72 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH--------HHhHhhhhhCCCChHHHHHHHHHHHHH
Confidence            45677888888999999 9998887777665  3432        789999999999999999999988877

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=85.52  E-value=3.9  Score=31.53  Aligned_cols=70  Identities=21%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccC-CCHHHHHHH-------HhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYG-GSHEHIQFL-------VSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~-~~~~~i~~l-------v~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..-++.+.+.++.++..+| .|+-++.-+..- |. +....-       -...+++.|.+.|.+.++++...+.+|+.++
T Consensus        63 ~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KL  141 (298)
T PF12719_consen   63 KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI-DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKL  141 (298)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc-hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4567888888988899999 999999988632 22 222111       1245788888888888999999999999886

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.05  E-value=4.1  Score=36.13  Aligned_cols=93  Identities=25%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHH-HhcCChHHHHhhcCCCCHHHHHHHHHHHhhc------
Q 044025           33 VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFL-VSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL------  104 (129)
Q Consensus        33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~l-v~~g~i~~l~~lL~~~d~~~~~~aL~al~ni------  104 (129)
                      ..+.+..++..+...|+.|| .|.--++++...-.++--+.+ +..-.|..++++|..+-.-++.-++--|..+      
T Consensus       120 ~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~  199 (970)
T KOG0946|consen  120 NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS  199 (970)
T ss_pred             CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence            46889999999999999999 999999999876443322333 3567889999998754444443344433322      


Q ss_pred             -cc-CCC---ChHHHHHHHhccchhh
Q 044025          105 -GM-DNR---VNVYTQMINECDGLDK  125 (129)
Q Consensus       105 -~~-~~~---~~~~~~~i~e~ggl~~  125 (129)
                       +| .-+   -+.....+++-||+|-
T Consensus       200 IQKlVAFENaFerLfsIIeeEGg~dG  225 (970)
T KOG0946|consen  200 IQKLVAFENAFERLFSIIEEEGGLDG  225 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence             11 001   2444567888888764

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.73  E-value=3.8  Score=36.07  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             ChHHHHHHH--HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHH
Q 044025           11 PLSKLKENT--LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLC   83 (129)
Q Consensus        11 ~~~~~r~~w--~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~   83 (129)
                      |.+..|++=  +..-|-.    ....-+..+++|.++.++.++..-+| -++|+++.++++-....+....-.+.++.+.
T Consensus       376 pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~  455 (859)
T KOG1241|consen  376 PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALL  455 (859)
T ss_pred             cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHH
Confidence            445555543  4444444    11223447899999999998888999 9999999999873212222222345667777


Q ss_pred             hhcCCCCHHHHHHHHHHHhhcc
Q 044025           84 DLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        84 ~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .-|. ..|++...+.|++.+++
T Consensus       456 ~gL~-DePrva~N~CWAf~~La  476 (859)
T KOG1241|consen  456 EGLN-DEPRVASNVCWAFISLA  476 (859)
T ss_pred             HHhh-hCchHHHHHHHHHHHHH
Confidence            7664 57999999999998763

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.22  E-value=6  Score=32.93  Aligned_cols=93  Identities=19%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             HHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC--------CCHHHHHHHHhcCChHHHHhhcCC------CCHHHH
Q 044025           30 TVIVANIILLLVHLLQHAELEIK-EATWAISSATYG--------GSHEHIQFLVSQGYIKPLCDLLVC------SDQRIV   94 (129)
Q Consensus        30 ~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~--------~~~~~i~~lv~~g~i~~l~~lL~~------~d~~~~   94 (129)
                      .+++.+.++.|.++|.|.+.|+- ...--+--+++.        |-...+..||+.++++.|+.-+..      .+..=+
T Consensus       120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv  199 (536)
T KOG2734|consen  120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV  199 (536)
T ss_pred             HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence            36688999999999999999999 877777777752        123568899999999999998853      223445


Q ss_pred             HHHHHHHhhcccCCCChHHHHHHHhccchh
Q 044025           95 TVCLNGNRKLGMDNRVNVYTQMINECDGLD  124 (129)
Q Consensus        95 ~~aL~al~ni~~~~~~~~~~~~i~e~ggl~  124 (129)
                      ...|.-++|+.  ...+.++..+.+-|.+.
T Consensus       200 ~~~L~vveNlv--~~r~~~~~~~~e~~ll~  227 (536)
T KOG2734|consen  200 HNTLAVVENLV--EVRPAICTEIVEQGLLS  227 (536)
T ss_pred             HHHHHHHHHHH--hccHHHHHHHHHhhHHH
Confidence            66777777873  35778887766666553

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.21  E-value=1.3  Score=38.56  Aligned_cols=92  Identities=16%  Similarity=0.248  Sum_probs=63.1

Q ss_pred             ChHHHHHHH--HHHHhhH-hHHHHHh--hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH-HHHHHHhcCChHHHH
Q 044025           11 PLSKLKENT--LDSNIVV-CMYTVIV--ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE-HIQFLVSQGYIKPLC   83 (129)
Q Consensus        11 ~~~~~r~~w--~lsNI~~-qiq~vi~--~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~-~i~~lv~~g~i~~l~   83 (129)
                      ..++.|++-  ++.-|+. -.+-++.  ..++|.|+.+|++..+-|| =.||.+|..+.-...+ .-+|+..  ++..|.
T Consensus       405 ~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll  482 (885)
T KOG2023|consen  405 EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLL  482 (885)
T ss_pred             chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHH
Confidence            457778763  8888888 4555544  3589999999999999999 9999999876542111 1233332  344444


Q ss_pred             hhcCCCCHHHHHHHHHHHhhc
Q 044025           84 DLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        84 ~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..+-.++.++++.+..|..-+
T Consensus       483 ~~llD~NK~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  483 RRLLDSNKKVQEAACSAFATL  503 (885)
T ss_pred             HHHhcccHHHHHHHHHHHHHH
Confidence            444457888888888877543

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=84.17  E-value=2  Score=34.44  Aligned_cols=44  Identities=20%  Similarity=0.298  Sum_probs=36.0

Q ss_pred             HHHHhhH------hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025           20 LDSNIVV------CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATY   63 (129)
Q Consensus        20 ~lsNI~~------qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~   63 (129)
                      |++.|.+      .+..+++ -|+=..++++++|+|+++| ||.-|+.-+.+
T Consensus       377 Ac~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         377 ACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             eHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            6667766      5666764 6999999999999999999 99998876654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=83.13  E-value=0.44  Score=39.99  Aligned_cols=57  Identities=12%  Similarity=0.202  Sum_probs=40.8

Q ss_pred             cCChHHH-HHHHHHHHhccCCCHHHHHHH-HhcCChHHHHhhcC-CCCHHHHHHHHHHHhh
Q 044025           46 HAELEIK-EATWAISSATYGGSHEHIQFL-VSQGYIKPLCDLLV-CSDQRIVTVCLNGNRK  103 (129)
Q Consensus        46 ~~~~~v~-eA~wal~Ni~~~~~~~~i~~l-v~~g~i~~l~~lL~-~~d~~~~~~aL~al~n  103 (129)
                      .+.++|| .||+|++|+..+.... .+.. ...-+++.|+.|+. +.+.+++..+.-++.-
T Consensus       541 ~~~~kV~WNaCya~gNLfkn~a~~-lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v  600 (728)
T KOG4535|consen  541 EAAMKVRWNACYAMGNLFKNPALP-LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV  600 (728)
T ss_pred             ccccccchHHHHHHHHhhcCcccc-ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence            4577999 9999999999874321 0100 11237788999886 5889999999888854

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=82.34  E-value=3.7  Score=28.82  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             HHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcC--CCCHHHHH
Q 044025           20 LDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLV--CSDQRIVT   95 (129)
Q Consensus        20 ~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~--~~d~~~~~   95 (129)
                      +++.+-...+.-...-+-..+-..+..++.+-. .+.-+++.+-.+ -|+-...++ ..|..+.+..++.  ..+..+..
T Consensus        28 ~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~  106 (157)
T PF11701_consen   28 ILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVGSELFLSEGFLESLLPLASRKSKDRKVQK  106 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHH
Confidence            555443322222333455666667777777788 999999999987 457666676 6799999999998  78999999


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      .+++.+...
T Consensus       107 ~~lell~aA  115 (157)
T PF11701_consen  107 AALELLSAA  115 (157)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=82.17  E-value=11  Score=30.40  Aligned_cols=96  Identities=17%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             hHHHHHh-hccHHHHHHHhccC---ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC-C---CCHHHHHHH
Q 044025           27 CMYTVIV-ANIILLLVHLLQHA---ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV-C---SDQRIVTVC   97 (129)
Q Consensus        27 qiq~vi~-~g~lp~L~~ll~~~---~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~-~---~d~~~~~~a   97 (129)
                      .++.++| ..++..|..++++.   -+.+- .|+-.++.++.. .|.....+.++|+++.|.+-+. .   ...+++...
T Consensus        97 ~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n-ePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l  175 (379)
T PF06025_consen   97 RLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN-EPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL  175 (379)
T ss_pred             ccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc-CCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence            4566888 77888888889886   34667 888899999987 6777888889999999999887 2   445666666


Q ss_pred             HHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025           98 LNGNRKLGMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus        98 L~al~ni~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      -.+++-+.   -++...+.+.+++.++++
T Consensus       176 P~~l~Aic---LN~~Gl~~~~~~~~l~~~  201 (379)
T PF06025_consen  176 PNVLSAIC---LNNRGLEKVKSSNPLDKL  201 (379)
T ss_pred             HHHHhHHh---cCHHHHHHHHhcChHHHH
Confidence            66666553   244555666666666654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=81.64  E-value=7.1  Score=31.62  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=57.9

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCC---CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGG---SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~---~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .++.|-|-.-|.++|..++ =||-.+.-+.-+.   ....+..+|++|++|.+++....+|.++...+.++|++++
T Consensus        81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria  156 (524)
T KOG4413|consen   81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA  156 (524)
T ss_pred             hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            4566777777778899999 8888887775432   2456777889999999999998899999999999998874

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=81.40  E-value=11  Score=27.43  Aligned_cols=82  Identities=16%  Similarity=0.109  Sum_probs=53.0

Q ss_pred             HHHH-HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC-HHHHHHHHhcCChHHHHhhcCC
Q 044025           16 KENT-LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS-HEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        16 r~~w-~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~-~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      +.+. +++.++.    ..+.. -..++|.|+..+.++...++ .|.-++..++...+ ...+       ..+.+...+.+
T Consensus        71 ~~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-------~~~~l~~~~~~  142 (228)
T PF12348_consen   71 KTACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-------LLEILSQGLKS  142 (228)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-------HHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-------HHHHHHHHHhC
Confidence            3444 7777776    33222 25688999999999988999 99999999988643 1222       14555566778


Q ss_pred             CCHHHHHHHHHHHhhcc
Q 044025           89 SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~  105 (129)
                      .++.+...++..+..+.
T Consensus       143 Kn~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen  143 KNPQVREECAEWLAIIL  159 (228)
T ss_dssp             S-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            88999888888887663

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.93  E-value=6.6  Score=34.66  Aligned_cols=71  Identities=10%  Similarity=0.126  Sum_probs=57.7

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      -++|.+=+-++++|.+-| -|+-|++.+-.|.++++...++. +++|.+..++..+.--+...+.|+++++.+
T Consensus       364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~-qalp~ii~lm~D~sl~VkdTaAwtlgrI~d  435 (859)
T KOG1241|consen  364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI-QALPSIINLMSDPSLWVKDTAAWTLGRIAD  435 (859)
T ss_pred             hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh-hhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence            456666667788999999 99999999999998888887774 688999999985555566789999998854

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=80.76  E-value=5.4  Score=34.13  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=59.7

Q ss_pred             HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCC-CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGG-SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~-~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .++.|++..++.++.+.|...| ...|++.++.-+- +.++.+.+.+.| ...++++-+.++-.++.++++.++|..
T Consensus       469 fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~NDpc~~vq~q~lQilrNft  544 (743)
T COG5369         469 FLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTNDPCFKVQHQVLQILRNFT  544 (743)
T ss_pred             HHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhcCcccccHHHHHHHHHhcc
Confidence            5688999999999999999999 9999999988763 234565555544 467778777788899999999999873

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=80.67  E-value=3.6  Score=33.80  Aligned_cols=68  Identities=22%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             ccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           35 NIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        35 g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      .++..|+.+|+.. |+.+- =||.-|+..+.. .|+ .+.++ +-|+=..+++||+++||.+.-.||.|+..+
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~-yP~-gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~l  436 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRH-YPE-GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKL  436 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHh-Cch-HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            5788999999976 57777 999999998876 555 34455 679999999999999999999999998765

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=80.46  E-value=3.3  Score=20.46  Aligned_cols=13  Identities=23%  Similarity=0.429  Sum_probs=11.2

Q ss_pred             HHH-HHHHHHHHhc
Q 044025           50 EIK-EATWAISSAT   62 (129)
Q Consensus        50 ~v~-eA~wal~Ni~   62 (129)
                      .+| +|+|+|+++-
T Consensus         2 ~vR~~aa~aLg~~~   15 (30)
T smart00567        2 LVRHEAAFALGQLG   15 (30)
T ss_pred             HHHHHHHHHHHHcC
Confidence            579 9999999983

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>TIGR02270 conserved hypothetical protein

Probab=80.33  E-value=6.9  Score=31.98  Aligned_cols=67  Identities=12%  Similarity=-0.011  Sum_probs=43.5

Q ss_pred             HHHHHHHhccCChHHH-HHHHHHHHhcc------------CCCHHHHH-HHH------hcCChHHHHhhcCCCCHHHHHH
Q 044025           37 ILLLVHLLQHAELEIK-EATWAISSATY------------GGSHEHIQ-FLV------SQGYIKPLCDLLVCSDQRIVTV   96 (129)
Q Consensus        37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~------------~~~~~~i~-~lv------~~g~i~~l~~lL~~~d~~~~~~   96 (129)
                      +..|++.|.+.+..++ +++-+|+-+-.            +.++. .+ ..+      .....+++..+|.+.|+.+...
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~-vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~  166 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPP-GRAIGLAALGAHRHDPGPALEAALTHEDALVRAA  166 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChH-HHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHH
Confidence            6777777777777777 77777754322            11111 11 111      1234678888888889999999


Q ss_pred             HHHHHhhc
Q 044025           97 CLNGNRKL  104 (129)
Q Consensus        97 aL~al~ni  104 (129)
                      ++.+++.+
T Consensus       167 A~raLG~l  174 (410)
T TIGR02270       167 ALRALGEL  174 (410)
T ss_pred             HHHHHHhh
Confidence            99999876

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins

Probab=80.20  E-value=2.5  Score=28.22  Aligned_cols=41  Identities=24%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           53 EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        53 eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      ++.-.++.+++.  |+....+++.|+++.|+.||.+.+.++..
T Consensus        65 ~~Ik~l~~La~~--P~LYp~lv~l~~v~sL~~LL~HeN~DIai  105 (108)
T PF08216_consen   65 EEIKKLSVLATA--PELYPELVELGAVPSLLGLLSHENTDIAI  105 (108)
T ss_pred             HHHHHHHHccCC--hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence            677778877764  58888999999999999999998877643

A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
4b8j_A	528	Rimp_alpha1a Length = 528		2e-23
2yns_A	490	Rimp_alpha_b54nls Length = 490		2e-23
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		5e-15
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		5e-15
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		2e-11
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		2e-11
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		2e-11
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		3e-11
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-11
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		3e-11
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		3e-11
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		4e-11
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		4e-11
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		4e-11
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		4e-11
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		4e-11
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		4e-11
1ial_A	453	Importin Alpha, Mouse Length = 453		4e-11
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		4e-11
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		2e-10
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		3e-10
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-10
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		3e-10
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		3e-10
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		3e-10
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		3e-10
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		8e-10

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 9/87 (10%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
           KEA WAIS+AT GGSH+ I++LVS+G IKPLCDLL+C D RIVTVCL G     K+G  +
Sbjct: 389 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 448
Query: 109 R------VNVYTQMINECDGLDKIENL 129
           +      VNV++QMI+E +GL+KIENL
Sbjct: 449 KTLAAGDVNVFSQMIDEAEGLEKIENL 475

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 66/87 (75%), Gaps = 9/87 (10%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
           KEA WAIS+AT GGSH+ I++LVS+G IKPLCDLL+C D RIVTVCL G     K+G  +
Sbjct: 351 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 410
Query: 109 R------VNVYTQMINECDGLDKIENL 129
           +      VNV++QMI+E +GL+KIENL
Sbjct: 411 KTLAAGDVNVFSQMIDEAEGLEKIENL 437

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
           KEA WAI++AT GGS E I++LV  G IKPLCDLL   D +IV V LNG     +LG   
Sbjct: 333 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 392
Query: 109 R------VNVYTQMINECDGLDKIENL 129
                  +N Y  +I E  GLDKIE L
Sbjct: 393 AKRNGTGINPYCALIEEAYGLDKIEFL 419

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 9/87 (10%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGMDN 108
           KEA WAI++AT GGS E I++LV  G IKPLCDLL   D +IV V LNG     +LG   
Sbjct: 336 KEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQE 395
Query: 109 R------VNVYTQMINECDGLDKIENL 129
                  +N Y  +I E  GLDKIE L
Sbjct: 396 AKRNGTGINPYCALIEEAYGLDKIEFL 422

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 436 GETEKLSI---MIEECGGLDKIEAL 457

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 362 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 421
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 422 GETEKLSI---MIEECGGLDKIEAL 443

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 436 GETEKLSI---MIEECGGLDKIEAL 457

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 376 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 435
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 436 GETEKLSI---MIEECGGLDKIEAL 457

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 360 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 419
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 420 GETEKLSI---MIEECGGLDKIEAL 441

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 391
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 392 GETEKLSI---MIEECGGLDKIEAL 413

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 326 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 385
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 386 GETEKLSI---MIEECGGLDKIEAL 407

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 321 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 380
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 381 GETEKLSI---MIEECGGLDKIEAL 402

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 325 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 384
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 385 GETEKLSI---MIEECGGLDKIEAL 406

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 321 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 380
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 381 GETEKLSI---MIEECGGLDKIEAL 402

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 325 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 384
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 385 GETEKLSI---MIEECGGLDKIEAL 406

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 326 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 385
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 386 GETEKLSI---MIEECGGLDKIEAL 407

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 326 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 385
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 386 GETEKLSI---MIEECGGLDKIEAL 407

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 352 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 411
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 412 GETEKLSI---MIEECGGLDKIEAL 433

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           KEA WA+++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 327 KEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKL 386
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 387 GETEKLSI---MIEECGGLDKIEAL 408

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 10/85 (11%)
Query: 52  KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLN-------GNRKL 104
           K A WAI++ T GG+ E I +LV  G I+PL +LL   D +I+ V L+          KL
Sbjct: 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 454
Query: 105 GMDNRVNVYTQMINECDGLDKIENL 129
           G   ++++   MI EC GLDKIE L
Sbjct: 455 GETEKLSI---MIEECGGLDKIEAL 476

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG      I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 315 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 374
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 375 ADKEARGLNINENADFIEKAGGMEKIFN 402

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG      I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 314 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 373
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 374 ADKEARGLNINENADFIEKAGGMEKIFN 401

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG      I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 315 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 374
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 375 ADKEARGLNINENADFIEKAGGMEKIFN 402

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG      I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 313 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGE 372
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 373 ADKEARGLNINENADFIEKAGGMEKIFN 400

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG      I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 313 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 372
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 373 ADKEARGLNINENADFIEKAGGMEKIFN 400

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG      I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 314 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 373
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 374 ADKEARGLNINENADFIEKAGGMEKIFN 401

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 52  KEATWAISSATYGGSH--EHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNR---KLGM 106
           KEA WAIS+A+ GG    + I++LVSQG IKPLCDLL  +D RI+ V L+      K+G 
Sbjct: 401 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460
Query: 107 DNR------VNVYTQMINECDGLDKIEN 128
            ++      +N     I +  G++KI N
Sbjct: 461 ADKEARGLNINENADFIEKAGGMEKIFN 488

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-07
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-18
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-04
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-16
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-04
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 85.3 bits (211), Expect = 9e-21
 Identities = 51/109 (46%), Positives = 61/109 (55%), Gaps = 10/109 (9%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI ANI   L+ +LQ AE   + EA WAI++AT GGS E I++LV  G IKPLCDLL   
Sbjct: 314 VIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM 373

Query: 90  DQRIVTVCLNG---------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D +IV V LNG                  +N Y  +I E  GLDKIE L
Sbjct: 374 DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFL 422

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
             V+  + +L  LL  ++ ++  +A WA+S  +  G ++ IQ ++  G  + L +LL+ +
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLS-DGPNDKIQAVIDAGVCRRLVELLMHN 246

Query: 90  DQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D ++V+  L     +   +  ++ TQ+I  C  L  + +L
Sbjct: 247 DYKVVSPALRAVGNIVTGD--DIQTQVILNCSALQSLLHL 284

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 78.5 bits (193), Expect = 2e-18
 Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 12/111 (10%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSH--EHIQFLVSQGYIKPLCDLLV 87
           VI AN+I  LV LL+ AE + K EA WAIS+A+ GG    + I++LVSQG IKPLCDLL 
Sbjct: 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438

Query: 88  CSDQRIVTVCLNG---------NRKLGMDNRVNVYTQMINECDGLDKIENL 129
            +D RI+ V L+            K      +N     I +  G++KI N 
Sbjct: 439 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 489

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           V+ A+ + L + LL    +E+KE A WA+ +   G S ++  +++    ++P+  L   +
Sbjct: 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA-GDSTDYRDYVLQCNAMEPILGLFNSN 227

Query: 90  D---QRIVTVCL 98
                R  T  L
Sbjct: 228 KPSLIRTATWTL 239

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 78.5 bits (193), Expect = 2e-18
 Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           V+   ++  LV +L  A+ + + EA WAI++ T GG+ E I +LV  G I+PL +LL   
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413

Query: 90  DQRIVTVCLNGNRKL----GMDNRVNVYTQMINECDGLDKIENL 129
           D +I+ V L+    +             + MI EC GLDKIE L
Sbjct: 414 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 457

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 76.6 bits (189), Expect = 3e-18
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 30  TVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            VI A  +  LV LL     +I  EA WA+S+   G  +E IQ ++  G +  L  LL  
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSS 191

Query: 89  SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
            +++I+   L     +      N   Q + E   L+K+E L
Sbjct: 192 PNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQL 230

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 34  ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQR 92
            + +  +   L   +++ +  AT   S       +E IQ ++  G +  L  LL   +++
Sbjct: 11  GSELPQMTQQLNSDDMQEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALVQLLSSPNEQ 69

Query: 93  IVTVCLN--GNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           I+   L    N   G + +     Q + +   L  +  L
Sbjct: 70  ILQEALWALSNIASGGNEQ----IQAVIDAGALPALVQL 104

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 70.4 bits (173), Expect = 3e-16
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 31  VIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI A  +  LV LL     +I +EA WA+S+   G  +E IQ ++  G +  L  LL   
Sbjct: 92  VIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSP 150

Query: 90  DQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           +++I+   L     +          Q + E   L+K+E L
Sbjct: 151 NEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQL 188

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           VI A  +  LV LL     +I  EA WA+S+   GG +E  Q +   G ++ L  L    
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHE 192

Query: 90  DQRIVTVCLNG 100
           +++I       
Sbjct: 193 NEKIQKEAQEA 203

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
               + +  +V  L   + +  + A   +S    GG+ E IQ ++  G +  L  LL   
Sbjct: 8   HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSP 66

Query: 90  DQRIVTVCLN--GNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           +++I+   L    N  +          Q + +   L  +  L
Sbjct: 67  NEQILQEALWALSN--IASGGNEQ--IQAVIDAGALPALVQL 104

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 2/84 (2%)

Query: 30  TVIVANIILLLVHLLQHA-ELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            V +   + ++V LL       + +AT  +          +   L  QG I  L  LLV 
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLREQGAIPRLVQLLVR 405

Query: 89  SDQRIVTVCLNGNRKLGMDNRVNV 112
           + Q        G  +      V +
Sbjct: 406 AHQDTQRRTSMGGTQQQFVEGVRM 429

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 34  ANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQR 92
            N I L V LL      I+  A   +         E  + + ++G   PL +LL   ++ 
Sbjct: 456 LNTIPLFVQLLYSPIENIQRVAAGVLCE--LAQDKEAAEAIEAEGATAPLTELLHSRNEG 513

Query: 93  IVTVCLNGNRKLGMDNRVNV 112
           + T       ++  D   + 
Sbjct: 514 VATYAAAVLFRMSEDKPQDY 533

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 27  CMYTVIVANIILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCD 84
               ++ +     LV++++    E      +  +   +      +   +V  G ++ L  
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGL 231

Query: 85  LLVCSDQRIVTVCL 98
            L    QR+V  CL
Sbjct: 232 HLTDPSQRLVQNCL 245

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           V +A  +  +V LL    ++     T  +    Y G+ E    +++ G  + L +++   
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 194

Query: 90  DQRIVT 95
               + 
Sbjct: 195 TYEKLL 200

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
             +  ++  LV LL   ++ +   A   +S+ T   ++++   +   G I+ L   ++ +
Sbjct: 259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNKMMVCQVGGIEALVRTVLRA 317

Query: 90  DQR--IVTVCLNGNRKLGMDNRVNVYTQ-MINECDGLDKIENL 129
             R  I    +   R L   ++     Q  +    GL  +  L
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 30  TVIVANIILLLVHLLQHA-ELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            V +   + ++V LL       + +AT  +          +   L  QG I  L  LLV 
Sbjct: 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVR 541

Query: 89  SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDG 122
           + Q        G  +      V +  +++  C G
Sbjct: 542 AHQDTQRRTSMGGTQQQFVEGVRM-EEIVEACTG 574

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 46.2 bits (109), Expect = 5e-07
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 34  ANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQR 92
            N I L V LL      I+  A   +         E  + + ++G   PL +LL   ++ 
Sbjct: 592 LNTIPLFVQLLYSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEG 649

Query: 93  IVTVCL 98
           + T   
Sbjct: 650 VATYAA 655

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 31  VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           ++ A  +  L   L      +     W + +     S    +    +G +  L  LL   
Sbjct: 356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSD 411

Query: 90  DQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D  +VT        L  +N  N    M+ +  G++ +   
Sbjct: 412 DINVVTCAAGILSNLTCNNYKN--KMMVCQVGGIEALVRT 449

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 43.5 bits (102), Expect = 5e-06
 Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 13/111 (11%)

Query: 27  CMYTVIVANIILLLVHLLQHA---ELEIKEATWAISSATYGGSH--EHIQFLVSQGYIKP 81
               V     I  LV  +  A   E   + A  A+   T            +     +  
Sbjct: 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPV 492

Query: 82  LCDLLVCSDQRIV---TVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           +  LL       +   TV L  N  L   N        + E   + ++  L
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANH-----APLREQGAIPRLVQL 538

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 39.6 bits (92), Expect = 9e-05
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           V +A  +  +V LL    ++     T  +    Y G+ E    +++ G  + L +++   
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTY 330

Query: 90  DQRIVT 95
               + 
Sbjct: 331 TYEKLL 336

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 31  VIVANIILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
           ++ +     LV++++    E      +  +   +      +   +V  G ++ L   L  
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTD 371

Query: 89  SDQRIVTVCL 98
             QR+V  CL
Sbjct: 372 PSQRLVQNCL 381

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 15/120 (12%), Positives = 27/120 (22%), Gaps = 24/120 (20%)

Query: 31  VIVANIILLLVHLLQHAELEI-KEATWAISSATYGG--------------------SHEH 69
           +     I  LV LL  A  +  +  +   +   +                         +
Sbjct: 526 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN 585

Query: 70  IQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
              +     I     LL    + I  V      +L  D       + I        +  L
Sbjct: 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE---AAEAIEAEGATAPLTEL 642

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)

Query: 31  VIVANIILLLVHLLQHA-ELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           V +   + ++V LL       + +AT  +          +   L  QG I  L  LLV +
Sbjct: 351 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRA 409

Query: 90  DQRIVTVCLNGNRKLGMDNRVNV 112
            Q        G  +      V +
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRM 432

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           ++ A  +  L   L      + +   W + +     S    +    +G +  L  LL   
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSD 278

Query: 90  DQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           D  +VT        L  +N  N    M+ +  G++ +   
Sbjct: 279 DINVVTCAAGILSNLTCNNYKN--KMMVCQVGGIEALVRT 316

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 31  VIVANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS 89
           +   N I L V LL      I+  A   +         E  + + ++G   PL +LL   
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVL--CELAQDKEAAEAIEAEGATAPLTELLHSR 513

Query: 90  DQRIVTVCL 98
           ++ + T   
Sbjct: 514 NEGVATYAA 522

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 19/111 (17%), Positives = 30/111 (27%), Gaps = 13/111 (11%)

Query: 27  CMYTVIVANIILLLVHLLQHA---ELEIKEATWAISSATYGGSH--EHIQFLVSQGYIKP 81
               V     I  LV  +  A   E   + A  A+   T            +     +  
Sbjct: 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

Query: 82  LCDLLVCSDQRIV---TVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
           +  LL       +   TV L  N  L   N        + E   + ++  L
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANH-----APLREQGAIPRLVQL 405

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 31  VIVANIILLLVHLLQHAELEIK--EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
           ++ +     LV++++    E      +  +   +      +   +V  G ++ L   L  
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS--VCSSNKPAIVEAGGMQALGLHLTD 238

Query: 89  SDQRIVTVCL 98
             QR+V  CL
Sbjct: 239 PSQRLVQNCL 248

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 34  ANIILLLVHLLQHAELEIKE-ATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQR 92
            N +  L+  L+   L I   A   + + +   + +  + L   G +  L +L+    + 
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKM 320

Query: 93  IVTVC 97
           I    
Sbjct: 321 IAMGS 325

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 32  IVANIILLLVHLLQHAELEIKE-ATWAIS--SATYGGSHEHIQFLVSQGYIKPLCDLLVC 88
            +A ++  L +  Q   L I E     +   S+    + +H Q L     ++ L   L  
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274

Query: 89  SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL 129
               IV+        L   N  +   + + +   +  ++NL
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKD--QEALWDMGAVSMLKNL 313

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 31  VIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD 90
            +  +   +L+  +Q    ++K  +  +      G  EH   L S G ++ L  L+    
Sbjct: 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 222

Query: 91  QRIVTVCLN 99
                  L 
Sbjct: 223 SPFHEHVLG 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.9
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.75
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.75
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.74
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.73
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.73
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.73
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.72
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.72
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.71
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.7
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.68
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.65
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.63
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.62
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.62
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.61
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.61
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.6
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.6
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.59
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.58
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.56
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.56
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.55
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.5
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.47
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.47
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.46
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.46
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.4
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.32
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.73
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.73
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	98.59
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.37
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.32
3grl_A	651	General vesicular transport factor P115; vesicle t	98.23
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.92
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.88
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.87
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.84
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.82
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	97.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.75
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	97.7
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.66
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.64
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.54
3grl_A	651	General vesicular transport factor P115; vesicle t	97.47
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.35
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.34
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.21
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	97.17
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.16
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	96.97
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	96.92
1qgr_A	876	Protein (importin beta subunit); transport recepto	96.68
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.65
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	95.99
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.97
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	95.48
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	94.79
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	94.63
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	94.5
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.41
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	93.68
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	93.54
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.46
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	93.08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.82
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.31
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	92.28
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	92.26
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	91.17
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	90.96
2x1g_F	971	Cadmus; transport protein, developmental protein,	90.95
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	90.48
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	89.52
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.02
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	87.56
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	86.38
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	86.08
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	85.19
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	84.54
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	80.5

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.90  E-value=1.6e-23  Score=169.75  Aligned_cols=119  Identities=34%  Similarity=0.511  Sum_probs=108.3

Q ss_pred             ChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025           11 PLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        11 ~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      +.....++|+|+||++    +++.++++|++|.|+.++.++++++| +|+|||+|++.+++++++.++++.|++++|+++
T Consensus       349 ~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~L  428 (529)
T 3tpo_A          349 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL  428 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHH
Confidence            3344446699999998    78889999999999999999999999 999999999999899999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhccc----CCCChHHHHHHHhccchhhhcCC
Q 044025           86 LVCSDQRIVTVCLNGNRKLGM----DNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~~----~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      |.++|++++..+|++|.|+.+    .+..+.++.+|+||||+++||.|
T Consensus       429 L~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L  476 (529)
T 3tpo_A          429 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  476 (529)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence            999999999999999999842    44678999999999999999976

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.89  E-value=3.4e-23  Score=167.49  Aligned_cols=125  Identities=33%  Similarity=0.478  Sum_probs=110.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      .++...+.....++|+++||++    +++.++++|++|.|+.+++++++++| +|+|||+|++.+++++++.++++.|++
T Consensus       324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i  403 (510)
T 3ul1_B          324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII  403 (510)
T ss_dssp             CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCH
Confidence            3433333344445699999998    78889999999999999999999999 999999999999899999999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHhhccc----CCCChHHHHHHHhccchhhhcCC
Q 044025           80 KPLCDLLVCSDQRIVTVCLNGNRKLGM----DNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        80 ~~l~~lL~~~d~~~~~~aL~al~ni~~----~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      ++|+++|.++|++++..+|++|.|+.+    .+..++++.+|+++||+++||.|
T Consensus       404 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L  457 (510)
T 3ul1_B          404 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  457 (510)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH
Confidence            999999999999999999999999843    45678999999999999999875

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.75  E-value=2.3e-18  Score=138.28  Aligned_cols=120  Identities=56%  Similarity=0.807  Sum_probs=106.0

Q ss_pred             CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025           10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD   84 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~   84 (129)
                      .+.....++|+|+|+++    +++.+++.|++|.|+++|.++++++| +|+|+|+|++.++++++..++++.|++++|++
T Consensus       342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~  421 (528)
T 4b8j_A          342 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCD  421 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence            33444456699999997    78889999999999999999999999 99999999999888899999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhhcccCC---------CChHHHHHHHhccchhhhcCC
Q 044025           85 LLVCSDQRIVTVCLNGNRKLGMDN---------RVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        85 lL~~~d~~~~~~aL~al~ni~~~~---------~~~~~~~~i~e~ggl~~le~L  129 (129)
                      +|...|++++..++++|.++.+..         ..++|+..++++||+++|+.|
T Consensus       422 lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L  475 (528)
T 4b8j_A          422 LLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL  475 (528)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence            999999999999999999984321         356799999999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.75  E-value=5.9e-18  Score=136.79  Aligned_cols=122  Identities=17%  Similarity=0.276  Sum_probs=103.7

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH-----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV-----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVS   75 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~   75 (129)
                      +..++.+++...++++..+..+..     +|+.++++|++|+|+++|++. ++++| +|+|||+|++.+ ++++.+.+++
T Consensus        63 v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-~~e~~~~vv~  141 (510)
T 3ul1_B           63 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVD  141 (510)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            344556666666666656666544     799999999999999999865 68999 999999999987 7789999999


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           76 QGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        76 ~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      .|++|+|+.+|.++++.++..++++|+|++.  +....++.+.++|+++.+-
T Consensus       142 ~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~--d~~~~r~~v~~~G~i~~Ll  191 (510)
T 3ul1_B          142 GGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLL  191 (510)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHcCChHHHH
Confidence            9999999999999999999999999999963  5678889999999998764

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.74  E-value=3.1e-17  Score=116.95  Aligned_cols=122  Identities=27%  Similarity=0.307  Sum_probs=104.2

Q ss_pred             cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      ..++.+.+.....++|+++|++.    ..+.+++.|.+|.|+.+|+++++++| +|+|+|+|++.+ ++++.+.+++.|+
T Consensus        61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~  139 (210)
T 4db6_A           61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGA  139 (210)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCc
Confidence            34444444445456689999996    66778899999999999999999999 999999999986 6678888999999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      +|+|+++|.+++++++..++++|.|+..  ..++....+.+.|+++.|..
T Consensus       140 i~~L~~ll~~~~~~v~~~a~~aL~~l~~--~~~~~~~~~~~~g~i~~L~~  187 (210)
T 4db6_A          140 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQ  187 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCcHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999964  45777888999999988764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.73  E-value=3.7e-18  Score=130.76  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=88.6

Q ss_pred             ccCCCCChHHHHH-HHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            5 QKNPKLPLSKLKE-NTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         5 ~~~~~~~~~~~r~-~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      .++++.+....++ +|+|||+++    +.+.++++|.+|.|+.+|+++++++| +|+|+|+|++.+ ++++++++++.|+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~  210 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGM  210 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCC
Confidence            3443334455554 599999998    57788899999999999999999999 999999999998 6688999999999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      +|+|+.+|.++|++++..++++|+|+.+
T Consensus       211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          211 VQQLVALVRTEHSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999964

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.73  E-value=8.5e-18  Score=135.35  Aligned_cols=125  Identities=40%  Similarity=0.509  Sum_probs=107.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH--HHHHHHHhcC
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSH--EHIQFLVSQG   77 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~--~~i~~lv~~g   77 (129)
                      .+....+.....++|+|+|+++    +++.+++.|++|.|+.+|.++++++| +|+|+|+|++.++++  ++.+++++.|
T Consensus       349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~  428 (530)
T 1wa5_B          349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG  428 (530)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence            3433333444456699999997    78888999999999999999999999 999999999998777  8899999999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhcccC---------CCChHHHHHHHhccchhhhcCC
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMD---------NRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~---------~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      ++|+|+.+|...|++++..++++|.++...         ...++++..++++||+++|+.|
T Consensus       429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L  489 (530)
T 1wa5_B          429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC  489 (530)
T ss_dssp             CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHH
Confidence            999999999999999999999999988431         1346789999999999999865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.73  E-value=6.2e-18  Score=131.94  Aligned_cols=124  Identities=45%  Similarity=0.597  Sum_probs=105.4

Q ss_pred             cCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025            6 KNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK   80 (129)
Q Consensus         6 ~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~   80 (129)
                      ++...+.....++|+++|+++    +++.+++.|++|.++++|.++++++| +|+|+++|++.++++++.+++++.|++|
T Consensus       285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~  364 (450)
T 2jdq_A          285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK  364 (450)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence            433333344445689999996    77888899999999999999999999 9999999999887888999999999999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhcccCC---------CChHHHHHHHhccchhhhcCC
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLGMDN---------RVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~~~~---------~~~~~~~~i~e~ggl~~le~L  129 (129)
                      +|+++|...+++++..++++|.++....         ..++|+..+.++||+++|+.|
T Consensus       365 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l  422 (450)
T 2jdq_A          365 PLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFL  422 (450)
T ss_dssp             HHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHH
Confidence            9999999999999999999999874311         235789999999999998753

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.72  E-value=1.1e-17  Score=133.82  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=93.8

Q ss_pred             HHHHHHHhhH-------hH-HHHH-hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhc
Q 044025           17 ENTLDSNIVV-------CM-YTVI-VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLL   86 (129)
Q Consensus        17 ~~w~lsNI~~-------qi-q~vi-~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL   86 (129)
                      ++|+|+|+|+       ++ |.++ ++|++|.|+++|.++++++| +|+|+|+|++.+   ++.++++..|++|+|+++|
T Consensus       304 a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~---~~~~~~i~~~~i~~Lv~lL  380 (457)
T 1xm9_A          304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH---PLLHRVMGNQVFPEVTRLL  380 (457)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---GGGHHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC---HHHHHHHHHhhhHHHHHhc
Confidence            4699999997       24 5566 58999999999999999999 999999999986   5678899889999999999


Q ss_pred             CCCCH------HHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           87 VCSDQ------RIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        87 ~~~d~------~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      ...++      +++..++++++|+..  ++++++..+.++||+++|..|
T Consensus       381 ~~~~~~~~~~~~v~~~~l~~l~ni~~--~~~~~~~~i~~~g~l~~L~~L  427 (457)
T 1xm9_A          381 TSHTGNTSNSEDILSSACYTVRNLMA--SQPQLAKQYFSSSMLNNIINL  427 (457)
T ss_dssp             TSCCSCSTTHHHHHHHHHHHHHHHHT--TCTHHHHHHCCHHHHHHHHHH
T ss_pred             cCCCCCCCCcHHHHHHHHHHHHHHHh--cCHHHHHHHHHcCCHHHHHHH
Confidence            88653      688899999999953  577899999999999998754

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.72  E-value=2.3e-17  Score=126.32  Aligned_cols=121  Identities=10%  Similarity=-0.017  Sum_probs=103.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      +++...+.....++|+|+||+.    .-+.+++.|++|+|+.+|+++ +..+| +|+|||+|++.+ ++.+.+.+++.|.
T Consensus        90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~gg  168 (296)
T 1xqr_A           90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDG  168 (296)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCC
Confidence            5655455556667899999997    456678999999999999964 88999 999999999987 6677778889999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      +|+|..+|.++|+++...++|+|+++..  ++++..+.+.+.|+++.|-.
T Consensus       169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~--~~~~~~~~vv~~g~i~~Lv~  216 (296)
T 1xqr_A          169 FSVLMRAMQQQVQKLKVKSAFLLQNLLV--GHPEHKGTLCSMGMVQQLVA  216 (296)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHh--CChHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999964  36778889999999987743

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.71  E-value=1.5e-16  Score=113.38  Aligned_cols=120  Identities=25%  Similarity=0.272  Sum_probs=102.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      .++.+++.....++|+|+|++.    ..+.+++.|++|.|+++|+++++++| .|+|+|+|++.+ +++..+.+++.|++
T Consensus        20 LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i   98 (210)
T 4db6_A           20 QLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGAL   98 (210)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcHHHHHHHHCCCH
Confidence            3444445555556799999996    66788899999999999999999999 999999999987 55777888999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           80 KPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        80 ~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |.|+.+|.+.++.++..++++|+|+..  +.+.....+.+.|+++.+-
T Consensus        99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~  144 (210)
T 4db6_A           99 PALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALV  144 (210)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHc--CCHHHHHHHHHcCcHHHHH
Confidence            999999999999999999999999963  5667777888999998764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.70  E-value=4.8e-16  Score=113.37  Aligned_cols=123  Identities=28%  Similarity=0.316  Sum_probs=103.9

Q ss_pred             cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      ..++.+++......+|+|+|++.    ..+.+++.|++|.|+++|+++++++| +|+|+++|++.+ +++..+.+++.|+
T Consensus       103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~  181 (252)
T 4db8_A          103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGA  181 (252)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTC
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCC
Confidence            34444444444445689999999    34678899999999999999999999 999999999987 5577888899999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      +|.|+.+|.++++.++..++++|+|+..  +.+.....+.+.|+++.+..+
T Consensus       182 i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~l  230 (252)
T 4db8_A          182 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQL  230 (252)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTT
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHH
Confidence            9999999999999999999999999963  567778889999999988653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.68  E-value=2.3e-16  Score=127.69  Aligned_cols=121  Identities=17%  Similarity=0.261  Sum_probs=100.3

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH-----hHHHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV-----CMYTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      .++++++...+.++-.+.++..     .++.++++|++|.|+++|+. .++++| +|+|+|+|++.+ ++++.+.+++.|
T Consensus        84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~-~~~~~~~vv~~G  162 (529)
T 3tpo_A           84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVDGG  162 (529)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTT
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence            3444444444444445555443     79999999999999999975 468999 999999999998 668888999999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      ++|+|+.+|.++++.+...++++|+|++.  +....+..+.++|+++.+-.
T Consensus       163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~--~~~~~r~~i~~~g~i~~Ll~  211 (529)
T 3tpo_A          163 AIPAFISLLASPHAHISEQAVWALGNIAG--AGSAFRDLVIKHGAIDPLLA  211 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhc--cCHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999999999999963  56788999999999987643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.65  E-value=4.5e-16  Score=132.58  Aligned_cols=113  Identities=12%  Similarity=0.059  Sum_probs=99.0

Q ss_pred             HHHH-HHHHHHhhH---hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh-cCChHHHHhhc
Q 044025           14 KLKE-NTLDSNIVV---CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS-QGYIKPLCDLL   86 (129)
Q Consensus        14 ~~r~-~w~lsNI~~---qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i~~l~~lL   86 (129)
                      ..++ +|+++|++.   ....+++ +|.+|.|+.++++.+.++| +|+|+|+|++.+ ++++++++++ .|.+|+|+.+|
T Consensus       639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~-s~~~~~~ii~~~g~I~~Lv~LL  717 (810)
T 3now_A          639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV-SVKCCEKILAIASWLDILHTLI  717 (810)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHH
Confidence            3444 579999998   3333444 7999999999999999999 999999999997 6689999998 89999999999


Q ss_pred             CCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           87 VCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        87 ~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      .++|.+++..+++++.|+..  ++++++..+.++|+++.|..|
T Consensus       718 ~s~d~~vq~~A~~aL~NL~~--~s~e~~~~l~e~G~i~~L~~L  758 (810)
T 3now_A          718 ANPSPAVQHRGIVIILNMIN--AGEEIAKKLFETDIMELLSGL  758 (810)
T ss_dssp             TCSSHHHHHHHHHHHHHHHT--TCHHHHHHHHTSTHHHHHTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999964  467889999999999998765

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.63  E-value=5.8e-15  Score=107.63  Aligned_cols=122  Identities=25%  Similarity=0.259  Sum_probs=101.7

Q ss_pred             cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      ..+....+.....++|+|+|++.    ..+.+++.|++|.|+.+|+++++++| .|+|+|+|++.+ .+.+...+++.|+
T Consensus        61 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~  139 (252)
T 4db8_A           61 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGA  139 (252)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CchHHHHHHHCCC
Confidence            34444444444456689999997    56777899999999999999999999 999999999987 4455578899999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      +|.|+.+|.++++.++..++++|+|+..  +.+.....+.+.|+++.+..
T Consensus       140 i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~~  187 (252)
T 4db8_A          140 LPALVQLLSSPNEQILQEALWALSNIAS--GGNEQIQAVIDAGALPALVQ  187 (252)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHc--CChHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999963  46677788888999987753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=121.94  Aligned_cols=99  Identities=16%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhh----H---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025           14 KLKENTLDSNIV----V---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        14 ~~r~~w~lsNI~----~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      ...++|+|+|++    .   +.+.++++|++|.|+++|++++++++ +|+|+|+|++.+ ++++.+++++.|++|+|+++
T Consensus       351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~L  429 (458)
T 3nmz_A          351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL  429 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence            334569999998    2   77888899999999999999999999 999999999986 67889999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhcccCCCChHHH
Q 044025           86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYT  114 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~  114 (129)
                      |.+.++++...++++|.|+... ...+|.
T Consensus       430 L~s~~~~v~~~Aa~AL~nL~~~-~p~ky~  457 (458)
T 3nmz_A          430 IHSKHKMIAMGSAAALRNLMAN-RPAKYK  457 (458)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTC-CSCC--
T ss_pred             HhCCCHHHHHHHHHHHHHHHcC-CHhhhc
Confidence            9999999999999999999743 344443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.62  E-value=6e-15  Score=109.66  Aligned_cols=120  Identities=11%  Similarity=0.040  Sum_probs=93.2

Q ss_pred             ccccCCCCC--hHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025            3 IQQKNPKLP--LSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS   75 (129)
Q Consensus         3 i~~~~~~~~--~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~   75 (129)
                      +..+..+++  ..+..++|++.|++.    ..+.++++|.+|+|+++|++++.++| +|+|+|.|++.+ +++....+++
T Consensus        14 V~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~~I~~   92 (233)
T 3tt9_A           14 VSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKLEVAE   92 (233)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHH
Confidence            345554444  344456689999997    56678899999999999999999999 999999999986 5577788899


Q ss_pred             cCChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           76 QGYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        76 ~g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      .|+||+|+.+|. +.+..+...+..+|.|+..   .+.....+.+ +|++.|-
T Consensus        93 ~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~---~~~~k~~i~~-~~i~~Lv  141 (233)
T 3tt9_A           93 LNGVPRLLQVLKQTRDLETKKQITGLLWNLSS---NDKLKNLMIT-EALLTLT  141 (233)
T ss_dssp             TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT---SGGGHHHHHH-HHHHHHC
T ss_pred             cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc---ChhhHHHHHh-ccHHHHH
Confidence            999999999997 5789999999988888853   2233334444 3565553

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.61  E-value=7.5e-15  Score=106.16  Aligned_cols=121  Identities=18%  Similarity=0.253  Sum_probs=102.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      .++.+++......+|+++|++.    ..+.+++.|.+|.++++++++++++| .|+|+++|++.+ +++..+.+++.|++
T Consensus        94 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i  172 (252)
T 4hxt_A           94 LLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGV  172 (252)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCH
Confidence            3443334444445689999995    56667789999999999999999999 999999999987 55777889999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           80 KPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        80 ~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      |.|+++|.++++.+...++++|.++..  +.......+.+.|+++.+..
T Consensus       173 ~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~  219 (252)
T 4hxt_A          173 EVLVKLLTSTDSEVQKEAARALANIAS--GPTSAIKAIVDAGGVEVLQK  219 (252)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999963  57777888999999988754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.61  E-value=2.3e-15  Score=119.67  Aligned_cols=122  Identities=17%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             ccCCCCChHHHH-HHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHH--hccCCCHHHH-------
Q 044025            5 QKNPKLPLSKLK-ENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISS--ATYGGSHEHI-------   70 (129)
Q Consensus         5 ~~~~~~~~~~~r-~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~N--i~~~~~~~~i-------   70 (129)
                      .+..+.+....+ .+|+++|++.   ..+.+++.|++|.|+++|+++++++| +|+|+++|  ++.+++++++       
T Consensus       363 lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~a  442 (529)
T 1jdh_A          363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA  442 (529)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHH
T ss_pred             HhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHH
Confidence            344444333444 4599999998   34677899999999999999999999 99999999  7777666654       


Q ss_pred             -----------HHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           71 -----------QFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        71 -----------~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                                 ..+.+.|++++|+.++.+.++.++..+.+++.++.   .+++++..+.++||+++|+.|
T Consensus       443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~---~~~~~~~~i~~~~~~~~L~~l  509 (529)
T 1jdh_A          443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTEL  509 (529)
T ss_dssp             HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT---TSHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh---cCHHHHHHHHHcCChHHHHHH
Confidence                       34778999999999999999999999999999985   357889999999999998764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.60  E-value=4.6e-15  Score=115.99  Aligned_cols=99  Identities=16%  Similarity=0.106  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHhhH-------hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025           14 KLKENTLDSNIVV-------CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        14 ~~r~~w~lsNI~~-------qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      ...++|+|+|++.       +.+.++++|.+|.|+++|++++.++| +|+|+|+|++.+ ++++.+.+++.|++|+|+++
T Consensus       235 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~L  313 (354)
T 3nmw_A          235 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNL  313 (354)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHH
Confidence            3335689999982       67888899999999999999999999 999999999986 67888999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhcccCCCChHHH
Q 044025           86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYT  114 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~  114 (129)
                      |.+.++++...++++|.|+... ..+.|.
T Consensus       314 L~s~~~~i~~~A~~aL~nL~~~-~~~~~~  341 (354)
T 3nmw_A          314 IHSKHKMIAMGSAAALRNLMAN-RPAKYK  341 (354)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHTT-CCGGGC
T ss_pred             HhCCCHHHHHHHHHHHHHHHcC-CHHHHh
Confidence            9999999999999999999643 344444

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.60  E-value=3.8e-15  Score=119.55  Aligned_cols=122  Identities=21%  Similarity=0.225  Sum_probs=103.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      .+....+.....++|+|+|++.    +.+.+++.|++|.|+.+|.++ ++.+| +|+|+|+|++.+ ++++++.+++.|+
T Consensus       294 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~  372 (528)
T 4b8j_A          294 LLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGI  372 (528)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTC
T ss_pred             HHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCC
Confidence            3444444444455689999998    778889999999999999999 99999 999999999986 6788999999999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      +|+|+.+|...++++...++++|+|+... ++......+.+.|+++.|..
T Consensus       373 i~~L~~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~l~~~~~i~~L~~  421 (528)
T 4b8j_A          373 IGPLVNLLQTAEFDIKKEAAWAISNATSG-GSHDQIKYLVSEGCIKPLCD  421 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHH-SCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999642 35677778888999887754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.59  E-value=1.8e-14  Score=104.20  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=103.0

Q ss_pred             cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      ..+..+++.....++|++.|++.    ..+.+++.|++|.|+++|++++.++| .|+|+++|++.+ +++....+++.|+
T Consensus         9 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~   87 (252)
T 4hxt_A            9 KLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGG   87 (252)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCC
Confidence            34544444555566789999998    56777899999999999999999999 999999999987 4577778889999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      +|.++.+|.++++.++..++++|+|+..  ..+.....+.+.|+++.+.
T Consensus        88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~i~~L~  134 (252)
T 4hxt_A           88 VEVLVKLLTSTDSEVQKEAARALANIAS--GPDEAIKAIVDAGGVEVLV  134 (252)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999963  5677788888999988764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.58  E-value=5.1e-15  Score=118.30  Aligned_cols=118  Identities=14%  Similarity=0.042  Sum_probs=99.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH---h-HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV---C-MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~---q-iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      .++.+++.....++|++.|++.   . .+.++++|.+|.|+++|+++++++| +|+|+|.|++.+ +++....+++.|++
T Consensus        10 ~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i~~~G~i   88 (457)
T 1xm9_A           10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQNGI   88 (457)
T ss_dssp             HHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTTCH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCH
Confidence            3444455566677899999997   3 4488899999999999999999999 999999999996 56777778899999


Q ss_pred             HHHHhhcC-CCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           80 KPLCDLLV-CSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        80 ~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |+|+.+|. +.++++...+.++|.|+...   ++....+.+ |+++.|-
T Consensus        89 ~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~---~~~~~~i~~-g~i~~Lv  133 (457)
T 1xm9_A           89 REAVSLLRRTGNAEIQKQLTGLLWNLSST---DELKEELIA-DALPVLA  133 (457)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHTS---SSTHHHHHH-HHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHhcC---HHhHHHHHh-ccHHHHH
Confidence            99999998 78999999999999999742   445666777 9988764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.56  E-value=7.6e-15  Score=121.05  Aligned_cols=122  Identities=17%  Similarity=0.103  Sum_probs=94.4

Q ss_pred             ccCCCCChHHHH-HHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHH--hccCCCHHHHH------
Q 044025            5 QKNPKLPLSKLK-ENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISS--ATYGGSHEHIQ------   71 (129)
Q Consensus         5 ~~~~~~~~~~~r-~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~N--i~~~~~~~~i~------   71 (129)
                      .+..+......+ .+|+++|+++   ..+.+++.|++|.|+++|.++++++| +|+|+++|  ++.+++.+++.      
T Consensus       360 lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~a  439 (644)
T 2z6h_A          360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA  439 (644)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHH
T ss_pred             HhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHH
Confidence            444443333444 4589999998   33778899999999999999999999 99999999  88777777764      


Q ss_pred             ------------HHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           72 ------------FLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        72 ------------~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                                  .+.+.|++|+|+++|.+.++.++..+++++.++..   .++++..++++|++++|+.|
T Consensus       440 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~---~~~~~~~i~~~g~l~~L~~l  506 (644)
T 2z6h_A          440 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ---DKEAAEAIEAEGATAPLTEL  506 (644)
T ss_dssp             HHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT---SHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHcCChhHHHHH
Confidence                        56789999999999999999999999999999863   57889999999999988753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.56  E-value=1.5e-14  Score=116.34  Aligned_cols=114  Identities=23%  Similarity=0.253  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025           13 SKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV   87 (129)
Q Consensus        13 ~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~   87 (129)
                      ....++|+++|++.    +.+.+++.|++|.|+.+|.++++.+| +|+|+|+|++.+ ++++++.+++.|++|+|+.+|.
T Consensus       315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~  393 (530)
T 1wa5_B          315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLE  393 (530)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHh
Confidence            33345589999997    67888899999999999999999999 999999999987 6688899999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhcccCCCCh--HHHHHHHhccchhhhcC
Q 044025           88 CSDQRIVTVCLNGNRKLGMDNRVN--VYTQMINECDGLDKIEN  128 (129)
Q Consensus        88 ~~d~~~~~~aL~al~ni~~~~~~~--~~~~~i~e~ggl~~le~  128 (129)
                      ..++.++..++++|+|+... +..  ++...+.+.|+++.|..
T Consensus       394 ~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~l~~~~~l~~L~~  435 (530)
T 1wa5_B          394 VAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGCIKPLCD  435 (530)
T ss_dssp             HSCHHHHHHHHHHHHHHHHH-TTTCTHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHCCCHHHHHH
Confidence            89999999999999999642 233  66777788999887753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.55  E-value=1.8e-14  Score=122.79  Aligned_cols=100  Identities=11%  Similarity=0.030  Sum_probs=86.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH----hHHHHHh-hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV----CMYTVIV-ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~-~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      .+..+.......++|+|+|+++    +++.+++ +|.+|+|+++|.++++++| +|+|+++|++.+ ++++.+++++.|+
T Consensus       673 LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~  751 (810)
T 3now_A          673 LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDI  751 (810)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCC
Confidence            3444333344445699999998    7899998 9999999999999999999 999999999986 5689999999999


Q ss_pred             hHHHHhhcCCC---CHHHHHHHHHHHhhcc
Q 044025           79 IKPLCDLLVCS---DQRIVTVCLNGNRKLG  105 (129)
Q Consensus        79 i~~l~~lL~~~---d~~~~~~aL~al~ni~  105 (129)
                      +++|+++|..+   +++++..++++|+++.
T Consensus       752 i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          752 MELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             HHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            99999999765   7999999999999874

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.50  E-value=8.3e-14  Score=108.47  Aligned_cols=115  Identities=19%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             ChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025           11 PLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        11 ~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      +......+|+++|++.    +.+.+++.|++|.|+.+++++++.+| +|+|+|+|++.+ ++++.+.+++.|++|.|+.+
T Consensus       248 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~  326 (450)
T 2jdq_A          248 YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISI  326 (450)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence            3334445689999998    56778899999999999999999999 999999999987 66888889999999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |.+++++++..++++|+|+... ++.+....+.+.|+++.|.
T Consensus       327 l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~l~~~~~i~~L~  367 (450)
T 2jdq_A          327 LQTAEFRTRKEAAWAITNATSG-GSAEQIKYLVELGCIKPLC  367 (450)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHTCHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999632 2445566666888887764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.47  E-value=2.6e-13  Score=106.01  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             ChHHHHHH-HHHHHhhH---h-HHHHH-hhccHHHHHHHhccCCh----HHH-HHHHHHHHhcc--CCCHHHHHHHHhcC
Q 044025           11 PLSKLKEN-TLDSNIVV---C-MYTVI-VANIILLLVHLLQHAEL----EIK-EATWAISSATY--GGSHEHIQFLVSQG   77 (129)
Q Consensus        11 ~~~~~r~~-w~lsNI~~---q-iq~vi-~~g~lp~L~~ll~~~~~----~v~-eA~wal~Ni~~--~~~~~~i~~lv~~g   77 (129)
                      +...++.+ +++.|++.   . -..+. ++|.+|.|+++|++++.    +++ +|+|+|.|++.  .+++++.+.+++.|
T Consensus       184 ~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g  263 (354)
T 3nmw_A          184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN  263 (354)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence            34444544 58888876   2 22333 79999999999998754    589 99999999996  12567788888999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      ++|+|+.+|.+.+.+++..++++|.|+..  ++.+..+.+.++|+++.|..|
T Consensus       264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~i~~Lv~L  313 (354)
T 3nmw_A          264 CLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNL  313 (354)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHHHHHTTHHHHHHTT
T ss_pred             CHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999953  578888999999999988654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.47  E-value=2.1e-13  Score=112.81  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=95.0

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      +..|...++.....++|+|.|+|.    ..+.++++|.+|.|+++|++++.++| +|+|||.|++.+.+++....+++.|
T Consensus        54 V~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~G  133 (584)
T 3l6x_A           54 IAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCD  133 (584)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTT
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcC
Confidence            345555555555567799999997    67778899999999999999999999 9999999999864456777888999


Q ss_pred             ChHHHHhhcCC-CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025           78 YIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus        78 ~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      +||+|+.+|.+ .+..+...+..+|.|+..   .++....+.+ ||++.|
T Consensus       134 aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~---~~~~k~~I~~-~alp~L  179 (584)
T 3l6x_A          134 GVPALVRLLRKARDMDLTEVITGTLWNLSS---HDSIKMEIVD-HALHAL  179 (584)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHHHTT---SGGGHHHHHH-HTHHHH
T ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHHhC---CchhhHHHHh-ccHHHH
Confidence            99999999986 678899999999999864   2333444443 456554

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.46  E-value=1.5e-13  Score=116.24  Aligned_cols=122  Identities=16%  Similarity=0.100  Sum_probs=94.4

Q ss_pred             ccCCCCChHHH-HHHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHH--hccCCCHHHHH------
Q 044025            5 QKNPKLPLSKL-KENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISS--ATYGGSHEHIQ------   71 (129)
Q Consensus         5 ~~~~~~~~~~~-r~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~N--i~~~~~~~~i~------   71 (129)
                      .+..+...... ..+|+|+|+++   ..+.+++.|++|.|+++|.++++++| +|+|+++|  ++.++++++++      
T Consensus       496 lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~a  575 (780)
T 2z6g_A          496 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGA  575 (780)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHH
T ss_pred             HhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHH
Confidence            34444443333 45699999998   33567789999999999999999999 99999988  66666555543      


Q ss_pred             ------------HHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           72 ------------FLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        72 ------------~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                                  .+++.|++|+|+.+|.+.++.++..++.+|.++.   .+++++..+.++||++.|.+|
T Consensus       576 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~---~~~~~~~~i~~~g~i~~L~~L  642 (780)
T 2z6g_A          576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA---QDKEAAEAIEAEGATAPLTEL  642 (780)
T ss_dssp             HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH---TSHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh---cCHHHHHHHHHCCCHHHHHHH
Confidence                        3668999999999999999999999999999986   367889999999999998754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.46  E-value=4.6e-13  Score=107.94  Aligned_cols=118  Identities=17%  Similarity=0.119  Sum_probs=95.1

Q ss_pred             CChHHHHHH-HHHHHhhH-----hHHHHHhhccHHHHHHHhccCCh----HHH-HHHHHHHHhcc--CCCHHHHHHHHhc
Q 044025           10 LPLSKLKEN-TLDSNIVV-----CMYTVIVANIILLLVHLLQHAEL----EIK-EATWAISSATY--GGSHEHIQFLVSQ   76 (129)
Q Consensus        10 ~~~~~~r~~-w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~~~----~v~-eA~wal~Ni~~--~~~~~~i~~lv~~   76 (129)
                      .+...++.+ .++.|++.     +.+.+.++|.+|.|+++|.+++.    +++ +|+|+|.|++.  .+++++.+.+++.
T Consensus       299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~  378 (458)
T 3nmz_A          299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN  378 (458)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence            344455544 47777776     23323379999999999998754    489 99999999996  1366788888999


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      |++|+|+.+|.+.+.+++..++++|.|+..  ++.+....+.++|+++.|-.|
T Consensus       379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~i~~~G~I~~Lv~L  429 (458)
T 3nmz_A          379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEALWDMGAVSMLKNL  429 (458)
T ss_dssp             THHHHHHHHSSCSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHHTHHHHHHTT
T ss_pred             ccHHHHHHHHcCCChHHHHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999999963  477888999999999988654

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.40  E-value=1.2e-12  Score=108.32  Aligned_cols=115  Identities=11%  Similarity=-0.066  Sum_probs=94.9

Q ss_pred             cccCCCCChHHHHHHHHHHHhhH--hHHHHHhhccHHHHHHHhccC--------ChHHH-HHHHHHHHhccCCCHHHHHH
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVV--CMYTVIVANIILLLVHLLQHA--------ELEIK-EATWAISSATYGGSHEHIQF   72 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~--------~~~v~-eA~wal~Ni~~~~~~~~i~~   72 (129)
                      ..+...+......++|+|+|++.  +.+.+|+.|.+|.|+++|.++        ..+++ .|||+|+|++++ ++++.+.
T Consensus       362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~~  440 (584)
T 3l6x_A          362 DLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAKK  440 (584)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            34444444444445689999999  788889999999999999987        36789 999999999987 7789999


Q ss_pred             HHhcCChHHHHhhcCCC--CHHHHHHHHHHHhhcccCCCChHHHHHHHhccc
Q 044025           73 LVSQGYIKPLCDLLVCS--DQRIVTVCLNGNRKLGMDNRVNVYTQMINECDG  122 (129)
Q Consensus        73 lv~~g~i~~l~~lL~~~--d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~gg  122 (129)
                      +++.|+||+|+.+|.+.  .+++.+.|.++|.|+..   ..+.+..+++.|.
T Consensus       441 I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~---~~elr~~~kk~G~  489 (584)
T 3l6x_A          441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG---YKELRKPLEKEGW  489 (584)
T ss_dssp             HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT---SHHHHHHHHTTTC
T ss_pred             HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc---CHHHHHHHHHcCC
Confidence            99999999999999875  78999999999999853   6677777777543

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.32  E-value=3.2e-12  Score=94.92  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=80.0

Q ss_pred             cHHHHHHHhccCCh--HHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChH
Q 044025           36 IILLLVHLLQHAEL--EIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNV  112 (129)
Q Consensus        36 ~lp~L~~ll~~~~~--~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~  112 (129)
                      -+|.++++|+++++  ++| +|+|++.|++.+ +++..+.+++.|+||+|+.+|.+++++++..+.++|.|+..  ++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~-~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~--~~~~   85 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF--EDND   85 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcC-CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CCHH
Confidence            58999999999988  999 999999999987 45666778899999999999999999999999999999963  4677


Q ss_pred             HHHHHHhccchhhhcC
Q 044025          113 YTQMINECDGLDKIEN  128 (129)
Q Consensus       113 ~~~~i~e~ggl~~le~  128 (129)
                      ....|.++||++.|-.
T Consensus        86 nk~~I~~~GaI~~Lv~  101 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQ  101 (233)
T ss_dssp             HHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            8889999999988743

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.22  E-value=1.1e-10  Score=92.55  Aligned_cols=112  Identities=11%  Similarity=0.040  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           13 SKLKENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        13 ~~~r~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      .....++++.|++.   ..+.+++.|.+|.|+++|+++++++| +|+|++.|++.+. ++..+.+++.|++|+|+++|.+
T Consensus        76 ~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~  154 (529)
T 1jdh_A           76 TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNK  154 (529)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhc
Confidence            33344579999988   56667789999999999999999999 9999999999873 3456677799999999999999


Q ss_pred             CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           89 SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      +++++...+..++.++..  ++++....+.+.|+++.+-
T Consensus       155 ~~~~~~~~~~~~L~~la~--~~~~~~~~i~~~~~i~~L~  191 (529)
T 1jdh_A          155 TNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALV  191 (529)
T ss_dssp             CCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh--CCHHHHHHHHHCCCHHHHH
Confidence            999999999999999863  4677788888889887653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.16  E-value=1.1e-10  Score=96.11  Aligned_cols=114  Identities=11%  Similarity=0.051  Sum_probs=95.1

Q ss_pred             ChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025           11 PLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        11 ~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      +....+. +.+|.|++.   ..+.+.+.|++|.|+++|+++++++| +|+|+|.|++.+. ++..+.+++.|++|.|+.+
T Consensus        70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~l  148 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVAL  148 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHH
Confidence            3444444 469999988   56667789999999999999999999 9999999999873 3556677899999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      |.+.++++...++.+|.++..  +.++....+.+.|+++.|-
T Consensus       149 L~~~~~~~~~~a~~~L~~La~--~~~~~~~~i~~~g~v~~Lv  188 (644)
T 2z6h_A          149 LNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALV  188 (644)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHH
T ss_pred             HCcCCHHHHHHHHHHHHHHHh--cCcHHHHHHHHcCChHHHH
Confidence            999899999989999999963  4677788888999987653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.07  E-value=5.4e-10  Score=94.56  Aligned_cols=113  Identities=11%  Similarity=0.072  Sum_probs=92.2

Q ss_pred             ChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025           11 PLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        11 ~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      +....+. +++|.|++.   ..+.+.+.|++|.|+++|+++++.+| +|+|+|.|++.+. ++..+.+++.|++|.|+.+
T Consensus       206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~l  284 (780)
T 2z6g_A          206 DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVAL  284 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHH
Confidence            3444444 579999987   55667789999999999999999999 9999999999873 3555667789999999999


Q ss_pred             cCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhh
Q 044025           86 LVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKI  126 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~l  126 (129)
                      |..++.++...++.++.++..  +.++....+.+.|+++.|
T Consensus       285 L~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~i~~L  323 (780)
T 2z6g_A          285 LNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQAL  323 (780)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCCHHHH
Confidence            999999999999999998853  356667777777887654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.4e-08  Score=86.11  Aligned_cols=122  Identities=16%  Similarity=0.015  Sum_probs=86.8

Q ss_pred             CCCChHHHHHHHHHHHhhH---hHHHHHhhccHHHHHHHhccCChH---HH-HHHHHHHHhccCCCHHHHHHHHh-cCCh
Q 044025            8 PKLPLSKLKENTLDSNIVV---CMYTVIVANIILLLVHLLQHAELE---IK-EATWAISSATYGGSHEHIQFLVS-QGYI   79 (129)
Q Consensus         8 ~~~~~~~~r~~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~---v~-eA~wal~Ni~~~~~~~~i~~lv~-~g~i   79 (129)
                      ...+.+....+|++.|++.   ....++..|++|.|+.++.++...   .| .|++||+|++...+|+++-.--+ .|++
T Consensus       468 S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI  547 (778)
T 3opb_A          468 NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAI  547 (778)
T ss_dssp             GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccch
Confidence            3344455556799999998   577788999999999999998654   89 99999999997767665310001 3899


Q ss_pred             HHHHhhcCC-CCH-------------HHHHHHHHHHhhcccCCCC--hHHHHHHHh-ccchhhhcCC
Q 044025           80 KPLCDLLVC-SDQ-------------RIVTVCLNGNRKLGMDNRV--NVYTQMINE-CDGLDKIENL  129 (129)
Q Consensus        80 ~~l~~lL~~-~d~-------------~~~~~aL~al~ni~~~~~~--~~~~~~i~e-~ggl~~le~L  129 (129)
                      |||++||.. ++.             .-.-.++.||.|++...++  ++.+..+.. +|++++|+.|
T Consensus       548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L  614 (778)
T 3opb_A          548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL  614 (778)
T ss_dssp             HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred             HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence            999999972 221             1255799999999753222  355665566 5999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.73  E-value=2.4e-08  Score=83.49  Aligned_cols=86  Identities=8%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH---hHHHHHhhccHHHH-HHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV---CMYTVIVANIILLL-VHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~---qiq~vi~~g~lp~L-~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      ++.+...++.....++|+++||+.   ..+.+...|+++.+ ..+|.+.+.++| +|+|++.|++..+.++-..++++.|
T Consensus        40 l~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~  119 (684)
T 4gmo_A           40 LKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLD  119 (684)
T ss_dssp             HHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcC
Confidence            344555556666678899999999   34445567777664 567899999999 9999999999776667788999999


Q ss_pred             ChHHHHhhcCC
Q 044025           78 YIKPLCDLLVC   88 (129)
Q Consensus        78 ~i~~l~~lL~~   88 (129)
                      ++++|..+|..
T Consensus       120 il~~L~~~l~~  130 (684)
T 4gmo_A          120 VLTAIEHAAKA  130 (684)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            99999998853

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=98.59  E-value=3.2e-08  Score=84.05  Aligned_cols=95  Identities=15%  Similarity=0.058  Sum_probs=78.1

Q ss_pred             CChHHHHHH-HHHHHhhH---hH-HHHHhhc------cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-
Q 044025           10 LPLSKLKEN-TLDSNIVV---CM-YTVIVAN------IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-   76 (129)
Q Consensus        10 ~~~~~~r~~-w~lsNI~~---qi-q~vi~~g------~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-   76 (129)
                      +.....|++ |+++|++.   .+ +.+++.+      -++.|+.+++.+|+++| .|+||++|++++ ++.-.+.+++. 
T Consensus       618 ~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~-~~~ia~~ll~~~  696 (778)
T 3opb_A          618 ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT-IPLIAKELLTKK  696 (778)
T ss_dssp             SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH-CHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC-ChHHHHHHHHcc
Confidence            344566666 59999998   44 5665432      38899999999999999 999999999875 54556788876 


Q ss_pred             CChHHHHhhcCC--CCHHHHHHHHHHHhhcc
Q 044025           77 GYIKPLCDLLVC--SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        77 g~i~~l~~lL~~--~d~~~~~~aL~al~ni~  105 (129)
                      +.++.++.+|..  +++.++..++.++.|+.
T Consensus       697 ~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~  727 (778)
T 3opb_A          697 ELIENAIQVFADQIDDIELRQRLLMLFFGLF  727 (778)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            899999999987  89999999999999985

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.37  E-value=5.4e-07  Score=59.92  Aligned_cols=68  Identities=12%  Similarity=0.006  Sum_probs=38.6

Q ss_pred             HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      .+|+++++..       ...+|.|..+|+++++.+| +|+|+++++..   +         .+++.|..+|..+|+.+..
T Consensus        62 A~~aL~~~~~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~---------~a~~~L~~~l~d~~~~vr~  122 (131)
T 1te4_A           62 AAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---E---------RVRAAMEKLAETGTGFARK  122 (131)
T ss_dssp             HHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---H---------HHHHHHHHHTTSCCTHHHH
T ss_pred             HHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHhCCCHHHHH
Confidence            3456666531       2345666666666666666 66666666541   1         1345556666666666666


Q ss_pred             HHHHHHhh
Q 044025           96 VCLNGNRK  103 (129)
Q Consensus        96 ~aL~al~n  103 (129)
                      .+.++|++
T Consensus       123 ~A~~aL~~  130 (131)
T 1te4_A          123 VAVNYLET  130 (131)
T ss_dssp             HHHHHGGG
T ss_pred             HHHHHHHh
Confidence            66666654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.32  E-value=7.9e-07  Score=74.33  Aligned_cols=93  Identities=13%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             HHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH-HhhcCCCCHHHHHHHHHHHhhcccCC
Q 044025           31 VIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL-CDLLVCSDQRIVTVCLNGNRKLGMDN  108 (129)
Q Consensus        31 vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l-~~lL~~~d~~~~~~aL~al~ni~~~~  108 (129)
                      ..+..++| +++.|++++++.| .|||||+|++.+  ++..+.+++.|+++++ ..+|..++..++..+..+++|++. .
T Consensus        31 ~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~-~  106 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ-E  106 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-H
T ss_pred             cchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-h
Confidence            34456666 4567999999999 999999999975  3555667788888775 557888999999999999999963 2


Q ss_pred             CChHHHHHHHhccchhhhc
Q 044025          109 RVNVYTQMINECDGLDKIE  127 (129)
Q Consensus       109 ~~~~~~~~i~e~ggl~~le  127 (129)
                      +....+..+.+.|++..|.
T Consensus       107 ~g~d~~~~l~~~~il~~L~  125 (684)
T 4gmo_A          107 EEADFCVHLYRLDVLTAIE  125 (684)
T ss_dssp             SCHHHHHHHHHTTHHHHHH
T ss_pred             cCchHHHHHHHcChHHHHH
Confidence            4567778888888887764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.23  E-value=8e-06  Score=68.17  Aligned_cols=109  Identities=17%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             HHHHHHHhhH----hHHHHH-hh-ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhc-CChHHHHhhcCC
Q 044025           17 ENTLDSNIVV----CMYTVI-VA-NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQ-GYIKPLCDLLVC   88 (129)
Q Consensus        17 ~~w~lsNI~~----qiq~vi-~~-g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~-g~i~~l~~lL~~   88 (129)
                      .+-.|+.++.    ..|..| ++ +.+|.|+.+|++....+| ||.-.|++++.+ + ..++.++.. |+++++.+++..
T Consensus       142 alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n-~~iQklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          142 GVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS-N-GAIQKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-C-HHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC-C-HHHHHHHHHhccHHHHHHHHHh
Confidence            3348888887    366654 44 999999999999999999 999999999998 4 568888876 999999999976


Q ss_pred             CC----HHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcCC
Q 044025           89 SD----QRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        89 ~d----~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      +.    ..++.-+|..+.|+.+.  +......+.|.|+++++..|
T Consensus       220 Eg~~~Ggivv~DCL~ll~nLLr~--N~sNQ~~FrEt~~i~~L~~L  262 (651)
T 3grl_A          220 EGNSDGGIVVEDCLILLQNLLKN--NNSNQNFFKEGSYIQRMKPW  262 (651)
T ss_dssp             HTGGGSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCGGGGGGG
T ss_pred             cCCCccchhHHHHHHHHHHHHhc--CHHHHHHHHHcCCHHHHHHH
Confidence            44    47888899999999753  33345679999999988643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.92  E-value=0.00011  Score=51.37  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=20.3

Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           77 GYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        77 g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      +.++.|..+|..+++.++..++++|+++
T Consensus       138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          138 RAVEPLIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            3566777777777777777777777766

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.88  E-value=0.00012  Score=51.41  Aligned_cols=27  Identities=15%  Similarity=0.192  Sum_probs=19.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      .++.|..+|..+++.++..++++|+++
T Consensus       144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~  170 (211)
T 3ltm_A          144 AVEPLIKALKDEDGWVRQSAADALGEI  170 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            566677777767777777777777766

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.87  E-value=7.4e-05  Score=52.57  Aligned_cols=29  Identities=17%  Similarity=0.150  Sum_probs=23.7

Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +.++.|..+|..+++.+...++++++++.
T Consensus       112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  140 (211)
T 3ltm_A          112 RAVEPLIKALKDEDWFVRIAAAFALGEIG  140 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            36788888888888888888888888763

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.84  E-value=8.4e-05  Score=51.88  Aligned_cols=28  Identities=18%  Similarity=0.167  Sum_probs=22.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +++.+..+|..+++.++..++++++++.
T Consensus       108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A          108 AVEPLIKALKDEDWFVRIAAAFALGEIG  135 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            6777788888888888888888887763

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.82  E-value=0.00011  Score=53.80  Aligned_cols=75  Identities=11%  Similarity=-0.028  Sum_probs=34.6

Q ss_pred             HHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           17 ENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        17 ~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      .+|++++++... ......++|.|..+++++++.+| .|+|+++++...            +++|.|..+|..+++.+..
T Consensus       111 a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------------~~~~~L~~~l~d~~~~vr~  177 (280)
T 1oyz_A          111 AIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK------------ATIPLLINLLKDPNGDVRN  177 (280)
T ss_dssp             HHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHHhccC-CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHcCCCHHHHH
Confidence            346666665200 00012345555556666666666 666666554321            2344444444444444444


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      .++++++++
T Consensus       178 ~a~~aL~~~  186 (280)
T 1oyz_A          178 WAAFAININ  186 (280)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            444444443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=97.80  E-value=0.0001  Score=53.97  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH
Q 044025           13 SKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ   91 (129)
Q Consensus        13 ~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~   91 (129)
                      .....+++++++..       ...+|.|..+++++++.+| .|+|+++++..+ ++         .+++.|..+|..+++
T Consensus       144 vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~---------~~~~~L~~~l~d~~~  206 (280)
T 1oyz_A          144 VRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININKYD-NS---------DIRDCFVEMLQDKNE  206 (280)
T ss_dssp             HHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC-CH---------HHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC-cH---------HHHHHHHHHhcCCCH
Confidence            33334568877642       4589999999999999999 999999998543 22         245677777877888


Q ss_pred             HHHHHHHHHHhhcc
Q 044025           92 RIVTVCLNGNRKLG  105 (129)
Q Consensus        92 ~~~~~aL~al~ni~  105 (129)
                      .+...++++|+++.
T Consensus       207 ~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          207 EVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC
Confidence            88888888888763

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.75  E-value=9.9e-06  Score=68.33  Aligned_cols=98  Identities=10%  Similarity=0.050  Sum_probs=69.0

Q ss_pred             cCCCCChHHHHHHHHHHHhhHhH----HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025            6 KNPKLPLSKLKENTLDSNIVVCM----YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK   80 (129)
Q Consensus         6 ~~~~~~~~~~r~~w~lsNI~~qi----q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~   80 (129)
                      ++...+.....++|++++++...    ....-.+++|.+++.+.+.++++| .|+|++++++.+..++...|+  .++++
T Consensus       409 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~  486 (852)
T 4fdd_A          409 LSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILD  486 (852)
T ss_dssp             TTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHH
Confidence            33333334444569999999821    122346889999999999999999 999999999976433322233  45788


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .|..++...+.+....++++++.+.
T Consensus       487 ~L~~~l~~~~~~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          487 TLVFAFSKYQHKNLLILYDAIGTLA  511 (852)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHH
Confidence            8888887667777777888887763

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=97.70  E-value=1.7e-05  Score=66.85  Aligned_cols=87  Identities=13%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             HHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH
Q 044025           17 ENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ   91 (129)
Q Consensus        17 ~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~   91 (129)
                      ++|++++|+.    +++. .-.+++|.+..++++.++.+| .|+|++++++.... .+.....-.++++.+...|..+++
T Consensus       379 a~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-~~~~~~~~~~ll~~L~~~L~d~~~  456 (852)
T 4fdd_A          379 GILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV-SQPPDTYLKPLMTELLKRILDSNK  456 (852)
T ss_dssp             HHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH-HSCTTTTHHHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhCCCH
Confidence            3479999988    2222 336889999999999999999 99999999986421 110011113578899999988899


Q ss_pred             HHHHHHHHHHhhcc
Q 044025           92 RIVTVCLNGNRKLG  105 (129)
Q Consensus        92 ~~~~~aL~al~ni~  105 (129)
                      .++..+++++.++.
T Consensus       457 ~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          457 RVQEAACSAFATLE  470 (852)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.66  E-value=8.5e-05  Score=49.06  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=49.8

Q ss_pred             HHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           37 ILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        37 lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +|.|..+|++.++.+| .|+|+++++..   +         .+++.|..+|..+|+.++..++++|+++.
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~---~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~  101 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD---E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG  101 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS---H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            6999999999999999 99999999863   1         24788888888899999999999999884

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.64  E-value=0.00011  Score=56.71  Aligned_cols=89  Identities=9%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             HHHH-HHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCC
Q 044025           15 LKEN-TLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSD   90 (129)
Q Consensus        15 ~r~~-w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d   90 (129)
                      .+.+ .++..++.  . +.++ ..++|.+...+++.+..+| .|++++++++.|..++.+...+ ..++|.+..+|..++
T Consensus       345 r~~a~~~L~~l~~~~~-~~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~  421 (462)
T 1ibr_B          345 CKAAGVCLMLLATCCE-DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS  421 (462)
T ss_dssp             HHHHHHHHHHHHHHTT-TTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSC
T ss_pred             HHHHHHHHHHHHHhcc-HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCC
Confidence            3344 58888876  2 2222 4688999999999999999 9999999999875433332222 468999999999999


Q ss_pred             HHHHHHHHHHHhhccc
Q 044025           91 QRIVTVCLNGNRKLGM  106 (129)
Q Consensus        91 ~~~~~~aL~al~ni~~  106 (129)
                      +.++..++++++++..
T Consensus       422 ~~Vr~~a~~~l~~~~~  437 (462)
T 1ibr_B          422 VVVRDTAAWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998843

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.54  E-value=0.00016  Score=59.07  Aligned_cols=81  Identities=16%  Similarity=0.191  Sum_probs=64.4

Q ss_pred             HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025           19 TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC   97 (129)
Q Consensus        19 w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a   97 (129)
                      .+++++..  .. +...++|.+..++.+.++.+| .|++++.++... +++.+.   +.++++.+..+|..+|+.++..+
T Consensus       108 ~~L~~i~~--~~-~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~---~~~~~~~l~~lL~d~d~~V~~~A  180 (591)
T 2vgl_B          108 RTMGCIRV--DK-ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE---DQGFLDSLRDLIADSNPMVVANA  180 (591)
T ss_dssp             HHHHTCCS--GG-GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH---HHHHHHHHHHTTSCSCHHHHHHH
T ss_pred             HHHHcCCh--HH-HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc---cccHHHHHHHHhCCCChhHHHHH
Confidence            47777753  11 123467889999999999999 999999999985 445332   35788999999999999999999


Q ss_pred             HHHHhhccc
Q 044025           98 LNGNRKLGM  106 (129)
Q Consensus        98 L~al~ni~~  106 (129)
                      +.++.++..
T Consensus       181 ~~aL~~i~~  189 (591)
T 2vgl_B          181 VAALSEISE  189 (591)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999999854

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.47  E-value=0.0008  Score=56.24  Aligned_cols=115  Identities=13%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             hHHHHH-H-HHHHHhhH---hHHHHHhh-ccHHHHHHHhccCCh----HHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025           12 LSKLKE-N-TLDSNIVV---CMYTVIVA-NIILLLVHLLQHAEL----EIK-EATWAISSATYGGSHEHIQFLVSQGYIK   80 (129)
Q Consensus        12 ~~~~r~-~-w~lsNI~~---qiq~vi~~-g~lp~L~~ll~~~~~----~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~   80 (129)
                      ...+|+ + -.|+++++   .+|+++.. |++++|+.++.....    .+. ++.-.+.|+..+ ++..-.++.+.|++|
T Consensus       179 rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~  257 (651)
T 3grl_A          179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQ  257 (651)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGG
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHH
Confidence            355564 3 49999999   89999875 999999999997544    566 999999999998 555445777899999


Q ss_pred             HHHhhcCCCCHH------HHHH---HHHHHhhcccCCC----ChHHHHHHHhccchhhhc
Q 044025           81 PLCDLLVCSDQR------IVTV---CLNGNRKLGMDNR----VNVYTQMINECDGLDKIE  127 (129)
Q Consensus        81 ~l~~lL~~~d~~------~~~~---aL~al~ni~~~~~----~~~~~~~i~e~ggl~~le  127 (129)
                      +|..+|...+..      -+.+   ++..++-+...++    +......+-++|++..+-
T Consensus       258 ~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll  317 (651)
T 3grl_A          258 RMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLC  317 (651)
T ss_dssp             GGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHH
Confidence            999999753321      2233   5555554422211    233445788999987654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.35  E-value=0.00022  Score=58.26  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=72.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC--------HHHHHHHH
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS--------HEHIQFLV   74 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~--------~~~i~~lv   74 (129)
                      .++...+....++++++.++.. .-+.+-+.+++|.+.++|.+.++.++ .|+++++.++....        +..+.+++
T Consensus       129 ~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll  208 (591)
T 2vgl_B          129 CLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLL  208 (591)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHH
Confidence            4444444455556689999987 21223346899999999999999999 99999999987531        12244444


Q ss_pred             h----------------------------cCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           75 S----------------------------QGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        75 ~----------------------------~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      +                            ..+++.+..+|++.++.++..+.+++..+.
T Consensus       209 ~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~  267 (591)
T 2vgl_B          209 TALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFL  267 (591)
T ss_dssp             HHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred             HcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            2                            246777778888888888888999888874

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00051  Score=50.56  Aligned_cols=101  Identities=10%  Similarity=0.091  Sum_probs=71.6

Q ss_pred             HHHHhhHhHHHHH----hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCH--HHHHHHHhcCChHHHHhhcCCCCHH
Q 044025           20 LDSNIVVCMYTVI----VANIILLLVHLLQHAELEIK-EATWAISSATYGGSH--EHIQFLVSQGYIKPLCDLLVCSDQR   92 (129)
Q Consensus        20 ~lsNI~~qiq~vi----~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~--~~i~~lv~~g~i~~l~~lL~~~d~~   92 (129)
                      ++.+++..+....    -..+++.+...|++.++.+| +++.+|+.++.....  +++...+...++|.+..+|..+++.
T Consensus       127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~  206 (249)
T 2qk1_A          127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPA  206 (249)
T ss_dssp             HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHH
Confidence            7777765211011    12588899999999999999 999999998865331  4444444457999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCChHHHHHHHhc
Q 044025           93 IVTVCLNGNRKLGMDNRVNVYTQMINEC  120 (129)
Q Consensus        93 ~~~~aL~al~ni~~~~~~~~~~~~i~e~  120 (129)
                      ++..+.++++.+.+.-|.+.+...+.+.
T Consensus       207 VR~aA~~~l~~i~~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          207 IRTIGFESFAILIKIFGMNTFVKTLEHL  234 (249)
T ss_dssp             HHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            9999999998864432444444444443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.21  E-value=0.0023  Score=53.23  Aligned_cols=85  Identities=9%  Similarity=0.142  Sum_probs=66.1

Q ss_pred             HHHHHhhHhH-HHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHH
Q 044025           19 TLDSNIVVCM-YTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTV   96 (129)
Q Consensus        19 w~lsNI~~qi-q~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~   96 (129)
                      .++..++... +.++ ..++|.+...+.+.++++| .|+|++++++.+..++.+...+ ..++|.+...|..+++.++..
T Consensus       350 ~~l~~l~~~~~~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~  427 (876)
T 1qgr_A          350 VCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDT  427 (876)
T ss_dssp             HHHHHHHHHHGGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHHCcHhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHH
Confidence            4888877611 1222 4678888888999999999 9999999999875545444333 358999999999899999999


Q ss_pred             HHHHHhhcc
Q 044025           97 CLNGNRKLG  105 (129)
Q Consensus        97 aL~al~ni~  105 (129)
                      ++++++++.
T Consensus       428 a~~~l~~~~  436 (876)
T 1qgr_A          428 AAWTVGRIC  436 (876)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=97.17  E-value=0.003  Score=50.00  Aligned_cols=83  Identities=6%  Similarity=-0.017  Sum_probs=56.2

Q ss_pred             HHHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           18 NTLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        18 ~w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      +++++.++. --...+...++|.+...++++++++| .++|+++.++..-.++.    ....++|.+..++...|++++.
T Consensus       501 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~  576 (588)
T 1b3u_A          501 LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKY  576 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHH
Confidence            467777776 11122335678888888888888888 88888888875422221    2234566677777778888888


Q ss_pred             HHHHHHhhc
Q 044025           96 VCLNGNRKL  104 (129)
Q Consensus        96 ~aL~al~ni  104 (129)
                      .+.++++.+
T Consensus       577 ~a~~al~~l  585 (588)
T 1b3u_A          577 FAQEALTVL  585 (588)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            888888766

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.16  E-value=0.0009  Score=55.08  Aligned_cols=87  Identities=7%  Similarity=-0.004  Sum_probs=69.1

Q ss_pred             CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      ++...--+++++++|..  ..+. ..++|.+..+|.+.++.+| .|++++.++... +|+.+.     +.++.+..+|..
T Consensus       120 n~~vr~lAL~~L~~i~~--~~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~-~p~~v~-----~~~~~l~~lL~D  190 (618)
T 1w63_A          120 TQFVQGLALCTLGCMGS--SEMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRK-VPELME-----MFLPATKNLLNE  190 (618)
T ss_dssp             SSHHHHHHHHHHHHHCC--HHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH-CGGGGG-----GGGGGTTTSTTC
T ss_pred             CHhHHHHHHHHHHhcCC--HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ChHHHH-----HHHHHHHHHhCC
Confidence            33343345579999975  1222 4678999999999999999 999999999986 555442     688999999999


Q ss_pred             CCHHHHHHHHHHHhhcc
Q 044025           89 SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~  105 (129)
                      .|+.++..++.++..+.
T Consensus       191 ~d~~V~~~Al~~L~~i~  207 (618)
T 1w63_A          191 KNHGVLHTSVVLLTEMC  207 (618)
T ss_dssp             CCHHHHHHHHHHHHHHC
T ss_pred             CCHhHHHHHHHHHHHHH
Confidence            99999999999999885

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=96.97  E-value=0.0078  Score=49.95  Aligned_cols=86  Identities=8%  Similarity=0.040  Sum_probs=65.3

Q ss_pred             HHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHH
Q 044025           19 TLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVC   97 (129)
Q Consensus        19 w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~a   97 (129)
                      .++.+++.....-+-..++|.+.+.+.+.+.++| .|+|++++++.+..++.+...++ .++|.+...+..+++.++..+
T Consensus       353 ~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a  431 (861)
T 2bpt_A          353 ACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETT  431 (861)
T ss_dssp             HHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHH
Confidence            5888877611111124577888888889999999 99999999998754455544443 488999999988899999999


Q ss_pred             HHHHhhcc
Q 044025           98 LNGNRKLG  105 (129)
Q Consensus        98 L~al~ni~  105 (129)
                      +++++++.
T Consensus       432 ~~~l~~l~  439 (861)
T 2bpt_A          432 AWCIGRIA  439 (861)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=96.92  E-value=0.0038  Score=49.46  Aligned_cols=83  Identities=8%  Similarity=0.022  Sum_probs=63.3

Q ss_pred             HHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           19 TLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        19 w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      .++++++.  .-+ .....++|.+..++++.++.+| .++++++.++..-.++    .....++|.+..++..+++.++.
T Consensus       463 ~~l~~l~~~~~~~-~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~  537 (588)
T 1b3u_A          463 SNLKKLVEKFGKE-WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRF  537 (588)
T ss_dssp             HHHHHHHHHHCHH-HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHH
T ss_pred             HHHHHHHHHhCch-hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHH
Confidence            48888776  111 1235788999999888999999 9999999988641111    12346889999999989999999


Q ss_pred             HHHHHHhhccc
Q 044025           96 VCLNGNRKLGM  106 (129)
Q Consensus        96 ~aL~al~ni~~  106 (129)
                      .++++++.+.+
T Consensus       538 ~a~~~l~~l~~  548 (588)
T 1b3u_A          538 NVAKSLQKIGP  548 (588)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHHHH
Confidence            99999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=96.68  E-value=0.0015  Score=54.28  Aligned_cols=84  Identities=13%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             HHHHHHhhH--h---HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH--HHHHHHhcCChHHHHhhcCCC
Q 044025           18 NTLDSNIVV--C---MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE--HIQFLVSQGYIKPLCDLLVCS   89 (129)
Q Consensus        18 ~w~lsNI~~--q---iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~--~i~~lv~~g~i~~l~~lL~~~   89 (129)
                      +|++++++.  .   +.. .-..++|.++..+++.++.+| .|+|++++++..-.+.  ...++  ..+++.+...|.. 
T Consensus       387 ~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~-  462 (876)
T 1qgr_A          387 VMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA-  462 (876)
T ss_dssp             HHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-
T ss_pred             HHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC-
Confidence            479999987  2   322 235799999999999999999 9999999998752211  01111  2467788888876 


Q ss_pred             CHHHHHHHHHHHhhcc
Q 044025           90 DQRIVTVCLNGNRKLG  105 (129)
Q Consensus        90 d~~~~~~aL~al~ni~  105 (129)
                      ++.+...+++++.++.
T Consensus       463 ~~~v~~~a~~al~~l~  478 (876)
T 1qgr_A          463 EPRVASNVCWAFSSLA  478 (876)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            4888888999998764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.65  E-value=0.0036  Score=45.00  Aligned_cols=79  Identities=15%  Similarity=0.061  Sum_probs=61.3

Q ss_pred             HHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHH--HHHHHhcCChHHHHhhcCCCCHHHH
Q 044025           20 LDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEH--IQFLVSQGYIKPLCDLLVCSDQRIV   94 (129)
Q Consensus        20 ~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~--i~~lv~~g~i~~l~~lL~~~d~~~~   94 (129)
                      ++.+++.  ..     ..++|.+...+++.++.+| +++-.++.+.....+++  ..++  ..++|.+..+|..++++++
T Consensus       121 aL~~~~~~~~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR  193 (242)
T 2qk2_A          121 AIDAIYASTSL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVR  193 (242)
T ss_dssp             HHHHHHTTSCH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHH
T ss_pred             HHHHHHHcCCH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHH
Confidence            7777765  32     2478899999999999999 99999999755433332  2333  2589999999999999999


Q ss_pred             HHHHHHHhhcc
Q 044025           95 TVCLNGNRKLG  105 (129)
Q Consensus        95 ~~aL~al~ni~  105 (129)
                      ..+..+++.+.
T Consensus       194 ~~A~~~l~~l~  204 (242)
T 2qk2_A          194 DSSAEALGTLI  204 (242)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=95.99  E-value=0.0052  Score=47.18  Aligned_cols=89  Identities=11%  Similarity=0.002  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhhHh-HHHHHhhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCC-
Q 044025           15 LKENTLDSNIVVC-MYTVIVANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCS-   89 (129)
Q Consensus        15 ~r~~w~lsNI~~q-iq~vi~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~-   89 (129)
                      ...+.+++.|+.+ ...---.+++|.+++.+.++  ++.+| .|++++.+++....++.....+ ..+++.+...|... 
T Consensus       107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~  185 (462)
T 1ibr_B          107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE  185 (462)
T ss_dssp             CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC
Confidence            3445688888761 11001157999999999998  99999 9999999998642222211111 23778888988876 


Q ss_pred             -CHHHHHHHHHHHhhc
Q 044025           90 -DQRIVTVCLNGNRKL  104 (129)
Q Consensus        90 -d~~~~~~aL~al~ni  104 (129)
                       ++.++..+++++.++
T Consensus       186 ~~~~vr~~a~~~l~~~  201 (462)
T 1ibr_B          186 PSNNVKLAATNALLNS  201 (462)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence             789999999999875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.97  E-value=0.0051  Score=51.02  Aligned_cols=81  Identities=15%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             HHHHHHhhH-----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC-----HHHHHHHHhcCChHHHHhhc
Q 044025           18 NTLDSNIVV-----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS-----HEHIQFLVSQGYIKPLCDLL   86 (129)
Q Consensus        18 ~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~-----~~~i~~lv~~g~i~~l~~lL   86 (129)
                      ++++++++.     .+...+ ..++|.+...+.+.++.+| .++|++++++..-.     .+...     .++|.+...|
T Consensus       390 ~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-----~~l~~l~~~l  463 (861)
T 2bpt_A          390 VMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP-----GVVQACLIGL  463 (861)
T ss_dssp             HHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH-----HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH-----HHHHHHHHHh
Confidence            369999986     222222 4689999999999999999 99999999986411     12222     3577888888


Q ss_pred             CCCCHHHHHHHHHHHhhcc
Q 044025           87 VCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        87 ~~~d~~~~~~aL~al~ni~  105 (129)
                      ..+ +.+...+.+++.++.
T Consensus       464 ~~~-~~v~~~a~~al~~l~  481 (861)
T 2bpt_A          464 QDH-PKVATNCSWTIINLV  481 (861)
T ss_dssp             TSC-HHHHHHHHHHHHHHH
T ss_pred             ccC-hHHHHHHHHHHHHHH
Confidence            654 888888999998764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=95.48  E-value=0.21  Score=35.52  Aligned_cols=77  Identities=6%  Similarity=-0.047  Sum_probs=60.9

Q ss_pred             HHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHH
Q 044025           19 TLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRI   93 (129)
Q Consensus        19 w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~   93 (129)
                      -+++.++.    .++. .-..++|.+.+.+.+.+..+| .|+-++.+++...+.   ..     ++|.+...|.+.++.+
T Consensus        79 ~~l~~la~~l~~~~~~-~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---~~-----ll~~l~~~l~~~~~~v  149 (242)
T 2qk2_A           79 KCLALLAKGLAKRFSN-YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---EA-----QQESIVESLSNKNPSV  149 (242)
T ss_dssp             HHHHHHHHHHGGGGHH-HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---HH-----HHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHhhhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---HH-----HHHHHHHHHcCCChHH
Confidence            38888776    2211 225689999999999999999 999999999876432   22     5678888899899999


Q ss_pred             HHHHHHHHhhc
Q 044025           94 VTVCLNGNRKL  104 (129)
Q Consensus        94 ~~~aL~al~ni  104 (129)
                      ...++..|+.+
T Consensus       150 r~~~l~~l~~~  160 (242)
T 2qk2_A          150 KSETALFIARA  160 (242)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999885

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=94.79  E-value=0.039  Score=45.54  Aligned_cols=80  Identities=13%  Similarity=0.059  Sum_probs=63.5

Q ss_pred             HHHHHhhHhHHHHHhhccHHHHHHHh--ccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHH
Q 044025           19 TLDSNIVVCMYTVIVANIILLLVHLL--QHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVT   95 (129)
Q Consensus        19 w~lsNI~~qiq~vi~~g~lp~L~~ll--~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~   95 (129)
                      .+++||..  ..+. ..++|.+.+++  .+.++.|| -|+.|+.++..- +|+.+.+   .+.++.+.++|...|+.++.
T Consensus       133 r~L~~i~~--~e~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~---~~~~~~l~~lL~d~d~~V~~  205 (621)
T 2vgl_A          133 HCIANVGS--REMA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPM---GDWTSRVVHLLNDQHLGVVT  205 (621)
T ss_dssp             HHHHHHCC--HHHH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCC---CSCHHHHHHHTTCSCHHHHH
T ss_pred             HHhhccCC--HHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCc---hhHHHHHHHHhCCCCccHHH
Confidence            38888754  2222 45788999999  88999999 999999999975 4554331   48999999999999999999


Q ss_pred             HHHHHHhhcc
Q 044025           96 VCLNGNRKLG  105 (129)
Q Consensus        96 ~aL~al~ni~  105 (129)
                      .++.++..+.
T Consensus       206 ~a~~~l~~i~  215 (621)
T 2vgl_A          206 AATSLITTLA  215 (621)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988774

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=94.63  E-value=0.33  Score=36.10  Aligned_cols=103  Identities=8%  Similarity=0.023  Sum_probs=71.1

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhHh----HHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCC--CHHHHHHHHh
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVVC----MYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGG--SHEHIQFLVS   75 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~q----iq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~--~~~~i~~lv~   75 (129)
                      +..+..+++....|+.-++-++-.+    ....+-..++|.++.++.+.|.++- .|.-++..+..|.  ++++...+.+
T Consensus        39 ~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~  118 (265)
T 3b2a_A           39 LELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAK  118 (265)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            3456677888888888899988762    3333347899999999999999999 9999999998875  3444333221


Q ss_pred             ------------------------------cCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           76 ------------------------------QGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        76 ------------------------------~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                                                    .+++..+.+++.+.|+.+...++.++-|++
T Consensus       119 aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          119 TLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             HHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence                                          013344455555666666666666666664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=94.50  E-value=0.05  Score=40.48  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCC-CHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGG-SHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~-~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      +++..+..++.+.|.++| -|..++.|++... +++...     +++.-+.++|++.|+.++..+|.++.++..
T Consensus       150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALS  218 (265)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            566788889989999999 9999999999752 334333     577888899999999999999999998753

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.41  E-value=0.052  Score=46.53  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhcc
Q 044025           10 LPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATY   63 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~   63 (129)
                      .+....+++|+++.++..++.-.-..++|.+++.|.+.+..|| .||||+.+++.
T Consensus       471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence            5666777889999998721111236688999999998899999 99999999886

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=93.68  E-value=0.61  Score=38.15  Aligned_cols=78  Identities=18%  Similarity=0.081  Sum_probs=55.9

Q ss_pred             HHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHH
Q 044025           19 TLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTV   96 (129)
Q Consensus        19 w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~   96 (129)
                      .+++.++. .-+.+  ....+.+..++.++|..+| .|...+..+++..+.+.        +++.|...+...|.++...
T Consensus       335 ~~L~~i~~~~p~~~--~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~--------iv~eL~~~l~~~d~e~r~~  404 (618)
T 1w63_A          335 TSLLKTVQTDHNAV--QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRG--------MMKELLYFLDSCEPEFKAD  404 (618)
T ss_dssp             HHHHHHHHHHHHHH--GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHH--------HHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHhhCHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHH--------HHHHHHHHHHhCCHHHHHH
Confidence            46666654 22222  4466788888899999999 99999999988755332        2356666666788899999


Q ss_pred             HHHHHhhccc
Q 044025           97 CLNGNRKLGM  106 (129)
Q Consensus        97 aL~al~ni~~  106 (129)
                      +..+|++++.
T Consensus       405 ~v~~I~~la~  414 (618)
T 1w63_A          405 CASGIFLAAE  414 (618)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=93.54  E-value=0.64  Score=33.72  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             HHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHH
Q 044025           20 LDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIV   94 (129)
Q Consensus        20 ~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~   94 (129)
                      +++-|.+    |.+.+  ...+|+|..+|.+.|.-+| .|.-++.|++.- ++. .+.++    +..+-. ++.....+.
T Consensus       164 aLnFi~alGen~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~-npk-lRkii----~~kl~e-~~D~S~lv~  234 (253)
T 2db0_A          164 ALNFIEAMGENSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATL-NDK-LRKVV----IKRLEE-LNDTSSLVN  234 (253)
T ss_dssp             HHHHHHTCCTTTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS-CHH-HHHHH----HHHHHH-CCCSCHHHH
T ss_pred             HHHHHHHHhccCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc-CHH-HHHHH----HHHHHH-hcCcHHHHH
Confidence            5555555    77777  7889999999999999999 999999999886 544 44443    334444 344455666


Q ss_pred             HHHHHHHhhc
Q 044025           95 TVCLNGNRKL  104 (129)
Q Consensus        95 ~~aL~al~ni  104 (129)
                      .-+-+|++++
T Consensus       235 ~~V~egL~rl  244 (253)
T 2db0_A          235 KTVKEGISRL  244 (253)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6777888776

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.46  E-value=0.17  Score=44.08  Aligned_cols=63  Identities=14%  Similarity=0.116  Sum_probs=49.4

Q ss_pred             ccHHHHHHHh-ccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           35 NIILLLVHLL-QHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        35 g~lp~L~~ll-~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ..+|+++..| ++.|+.+| -|+||++.++.| ++..       .++..|..++..+|..+.+.|+.+++.+.
T Consensus       611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aG-n~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG-KGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS-SCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC-CCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            4678888754 56899999 999999999987 4321       14556667777899999999999999874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=93.08  E-value=0.95  Score=35.03  Aligned_cols=83  Identities=7%  Similarity=-0.018  Sum_probs=64.5

Q ss_pred             HHHHHH--HHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC
Q 044025           13 SKLKEN--TLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC   88 (129)
Q Consensus        13 ~~~r~~--w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~   88 (129)
                      .+.|..  .++++|.. .+-    ..+.+.+-+.|.+.++.|| -|+.+...+... .|+.++     +.+..+-+++..
T Consensus       118 ~~iR~lALRtL~~I~~~~m~----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe~v~-----~~~~~l~~ll~d  187 (355)
T 3tjz_B          118 DSYRGPAVRALCQITDSTML----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFDVVK-----RWVNEAQEAASS  187 (355)
T ss_dssp             HHHHHHHHHHHHHHCCTTTH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHHHHH-----TTHHHHHHHTTC
T ss_pred             HhHHHHHHHHHhcCCCHHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHHHHH-----HHHHHHHHHhcC
Confidence            455543  48888865 211    2467788889999999999 999999999987 566443     688899999988


Q ss_pred             CCHHHHHHHHHHHhhcc
Q 044025           89 SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        89 ~d~~~~~~aL~al~ni~  105 (129)
                      .++.++-.++-++..+.
T Consensus       188 ~n~~V~~~Al~lL~ei~  204 (355)
T 3tjz_B          188 DNIMVQYHALGLLYHVR  204 (355)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHH
Confidence            99999888888887774

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=92.82  E-value=0.17  Score=44.14  Aligned_cols=86  Identities=10%  Similarity=0.016  Sum_probs=61.8

Q ss_pred             HHHHHhhH--hH-------HHHHhhccHHHHHHHhc-cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025           19 TLDSNIVV--CM-------YTVIVANIILLLVHLLQ-HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV   87 (129)
Q Consensus        19 w~lsNI~~--qi-------q~vi~~g~lp~L~~ll~-~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~   87 (129)
                      -+++.++.  .-       ..-.-..++|.|.+.+. ++++++| .|+-++++++.........|+  ..+++.|...|.
T Consensus       108 ~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~  185 (1230)
T 1u6g_C          108 IGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLT  185 (1230)
T ss_dssp             HHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGG
T ss_pred             HHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHc
Confidence            48888876  21       11233679999999998 5889999 999999999852110111122  346788888898


Q ss_pred             CCCHHHHHHHHHHHhhccc
Q 044025           88 CSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        88 ~~d~~~~~~aL~al~ni~~  106 (129)
                      +.++.++..++.+++.+..
T Consensus       186 ~~~~~vR~~a~~al~~l~~  204 (1230)
T 1u6g_C          186 SPRLAVRKRTIIALGHLVM  204 (1230)
T ss_dssp             CSSHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHH
Confidence            8899999999999988753

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.31  E-value=0.33  Score=41.16  Aligned_cols=90  Identities=8%  Similarity=-0.050  Sum_probs=56.8

Q ss_pred             CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025           10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD   84 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~   84 (129)
                      .+....+.+|+++..+.    +-+.+  ..+++.++..|.+  ++++ .||+++.+++.... +++.-.+ ..+++.+..
T Consensus       502 ~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~-~~l~p~~-~~il~~l~~  575 (963)
T 2x19_B          502 NVQLADTVMFTIGALSEWLADHPVMI--NSVLPLVLHALGN--PELSVSSVSTLKKICRECK-YDLPPYA-ANIVAVSQD  575 (963)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG-GGCTTTH-HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH-HHHHhhH-HHHHHHHHH
Confidence            34444455699999887    22222  6788999988865  8999 99999999996422 2211000 123344444


Q ss_pred             hcCC--CCHHHHHHHHHHHhhcc
Q 044025           85 LLVC--SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        85 lL~~--~d~~~~~~aL~al~ni~  105 (129)
                      ++..  -+.+....++++++.+.
T Consensus       576 ~l~~~~~~~~~~~~~~eai~~i~  598 (963)
T 2x19_B          576 VLMKQIHKTSQCMWLMQALGFLL  598 (963)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HhccCCCChHHHHHHHHHHHHHH
Confidence            4443  24677777888887764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=92.28  E-value=0.61  Score=36.06  Aligned_cols=99  Identities=10%  Similarity=-0.048  Sum_probs=74.5

Q ss_pred             cccCCCCChHHHHHHHHHHHhh-H---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH-hcC
Q 044025            4 QQKNPKLPLSKLKENTLDSNIV-V---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV-SQG   77 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~-~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g   77 (129)
                      +.|...+.....|....|..+- .   -++++|..+-+..|+.....++-..+ .+.-|+.++-...  +-..-++ +..
T Consensus       125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v--~Gm~gvvs~~~  202 (339)
T 3dad_A          125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV--DGMLGVVAHSD  202 (339)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH--HHHHHHHHCHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc--ccccchhCCHH
Confidence            3344444455555555777633 2   58889999999999999999999999 9999999998751  2233444 345


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      .|..+..++.+.+..+++.+|.-|..+
T Consensus       203 fI~~lyslv~s~~~~V~k~AL~LL~v~  229 (339)
T 3dad_A          203 TIQWLYTLCASLSRLVVKTALKLLLVF  229 (339)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHHH
Confidence            778888888888899999999988766

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=92.26  E-value=0.65  Score=40.17  Aligned_cols=84  Identities=11%  Similarity=0.011  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHH--h--------cCChH
Q 044025           16 KENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLV--S--------QGYIK   80 (129)
Q Consensus        16 r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv--~--------~g~i~   80 (129)
                      +.+|+++..+.    +-+.+  ..+++.+++.|.++++++| .||+++.+++.... +.   ++  .        ..++.
T Consensus       519 ~~~~~lgry~~~~~~~~~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~-~~---l~~~~~~~~~p~~~~il~  592 (1049)
T 3m1i_C          519 DIMYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK-YH---FVIQQPRESEPFIQTIIR  592 (1049)
T ss_dssp             HHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT-HH---HHSCCTTCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH---hhcccCCCCCcHHHHHHH
Confidence            45689998887    22222  5678888888888899999 99999999997522 22   22  0        11233


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .+..++..-+.+-...+.+|++.+.
T Consensus       593 ~l~~~~~~~~~~~~~~~~eai~~ii  617 (1049)
T 3m1i_C          593 DIQKTTADLQPQQVHTFYKACGIII  617 (1049)
T ss_dssp             THHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3334444445555566777877663

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=91.17  E-value=0.55  Score=41.01  Aligned_cols=67  Identities=10%  Similarity=0.242  Sum_probs=54.6

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ..+++.+.+.|.+.++++| .|+-++++++.+..+++..+     +++.++..|..+++.++..+..+++.+.
T Consensus        47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~-----i~~~Ll~~l~d~~~~vR~~a~~~L~~i~  114 (1230)
T 1u6g_C           47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKEQLRDISSIGLKTVI  114 (1230)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            3688999999999999999 99999999998754444433     5678888888888888888999998764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=90.96  E-value=0.47  Score=41.50  Aligned_cols=90  Identities=9%  Similarity=-0.007  Sum_probs=59.8

Q ss_pred             ChHHHHHH--HHHHHhhH----hHHHHHhhccHHHHHHHhcc-----CChHHH-HHHHHHHHhccC--CCHHHHHHHHhc
Q 044025           11 PLSKLKEN--TLDSNIVV----CMYTVIVANIILLLVHLLQH-----AELEIK-EATWAISSATYG--GSHEHIQFLVSQ   76 (129)
Q Consensus        11 ~~~~~r~~--w~lsNI~~----qiq~vi~~g~lp~L~~ll~~-----~~~~v~-eA~wal~Ni~~~--~~~~~i~~lv~~   76 (129)
                      +.+..+++  |+++-|+.    ....-+-..++|.|+.++.+     ....+| -++|+++..+.-  .+++.+.     
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence            44666654  89999987    22333336788888888874     344567 788999987642  1223222     


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           77 GYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        77 g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .++..+...|..+++.+...|.+|+.++.
T Consensus       540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~  568 (1023)
T 4hat_C          540 TVILKLFEFMHETHEGVQDMACDTFIKIV  568 (1023)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            24455666665567899999999998873

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=90.95  E-value=0.47  Score=40.38  Aligned_cols=89  Identities=11%  Similarity=-0.082  Sum_probs=57.5

Q ss_pred             CChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHh
Q 044025           10 LPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCD   84 (129)
Q Consensus        10 ~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~   84 (129)
                      .+....+.+|+++..+.    +-+.+  ..++|.++..| +  ++++ .|+|++.+++.... +.+.-.+ ..++..+..
T Consensus       519 ~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~-~~l~p~~-~~ll~~l~~  591 (971)
T 2x1g_F          519 NVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ-LQLKPYA-DPLLNACHA  591 (971)
T ss_dssp             CHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH-HHHHHHH-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH-HhccccH-HHHHHHHHH
Confidence            34444456699999887    12222  45777777777 3  7899 99999999996532 3222111 245566666


Q ss_pred             hcCC--CCHHHHHHHHHHHhhcc
Q 044025           85 LLVC--SDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        85 lL~~--~d~~~~~~aL~al~ni~  105 (129)
                      ++..  -+.+....++++++.+.
T Consensus       592 ~l~~~~~~~~~~~~~~~ai~~i~  614 (971)
T 2x1g_F          592 SLNTGRMKNSDSVRLMFSIGKLM  614 (971)
T ss_dssp             HHHSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCChHHHHHHHHHHHHHH
Confidence            6665  35678888888888764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=90.48  E-value=0.78  Score=34.17  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=51.3

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccC-CCHHHHHHHHhcCCh---HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYG-GSHEHIQFLVSQGYI---KPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~-~~~~~i~~lv~~g~i---~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..+++.+.+-+.+.+.++| |++-.+.++... |.+       ....+   |.++.++...|..++..|+.++..+
T Consensus       166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~  234 (266)
T 2of3_A          166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC  234 (266)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            3577888888888899999 988888887632 322       13478   9999999999999999999999765

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=89.52  E-value=4.6  Score=29.24  Aligned_cols=72  Identities=13%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHH-----------------HHHHH-----h----------cCChH
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEH-----------------IQFLV-----S----------QGYIK   80 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~-----------------i~~lv-----~----------~g~i~   80 (129)
                      .+++|.+..=+.-+|+++| .-.+++.-++.. +|+.                 ...++     +          ...+|
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLp  184 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLP  184 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHH
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchH
Confidence            4677777777788899999 999999877643 3322                 12111     1          12678


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      .+..||...|.-++..+.+++.+++.
T Consensus       185 rL~aLL~D~deiVRaSaVEtL~~lA~  210 (253)
T 2db0_A          185 RIINLLHDGDEIVRASAVEALVHLAT  210 (253)
T ss_dssp             HHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCcchhhhHHHHHHHHHHHH
Confidence            88899988888888889999998853

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.02  E-value=1.9  Score=37.74  Aligned_cols=83  Identities=8%  Similarity=-0.029  Sum_probs=52.2

Q ss_pred             HHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHh--c--------CChHHH
Q 044025           18 NTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVS--Q--------GYIKPL   82 (129)
Q Consensus        18 ~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~--~--------g~i~~l   82 (129)
                      +|+++..+.    +-+.+  ..++..+.+.+....++++ -||||+.+++.... +   .++.  .        .++..+
T Consensus       521 ~~~lGry~~wl~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~-~---~l~~~~~~e~~p~~~~il~~l  594 (1023)
T 4hat_C          521 MYVVGQYPRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK-Y---HFVIQQPRESEPFIQTIIRDI  594 (1023)
T ss_dssp             HHHHHTCHHHHHHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT-H---HHHSCCTTCSSCHHHHHHHTH
T ss_pred             HHHHHHHHHHHhccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-H---HhhccCCCCCchhHHHHHHHH
Confidence            499999988    22222  4566666666666778999 99999999997521 2   2221  1        122223


Q ss_pred             HhhcCCCCHHHHHHHHHHHhhccc
Q 044025           83 CDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        83 ~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      ......-+++-...+.+|++.+.+
T Consensus       595 ~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          595 QKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHH
Confidence            333333566777788888887643

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=87.56  E-value=0.74  Score=33.40  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=51.7

Q ss_pred             ccHHHHHHHh-ccCChHHH-HHHHHHHHhccCCC-HHHH-HHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           35 NIILLLVHLL-QHAELEIK-EATWAISSATYGGS-HEHI-QFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        35 g~lp~L~~ll-~~~~~~v~-eA~wal~Ni~~~~~-~~~i-~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      .++..|...+ +..+..++ .|+-+++.++.+-. +.-- .|...  ++|++++.+....+.++..+-.++..+.
T Consensus        60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~  132 (249)
T 2qk1_A           60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTIC  132 (249)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            5677888888 68899999 99999999997532 2211 34433  7899999998888888877777776653

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=86.38  E-value=1.8  Score=36.99  Aligned_cols=57  Identities=12%  Similarity=0.068  Sum_probs=44.0

Q ss_pred             hccC---ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           44 LQHA---ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        44 l~~~---~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      |.++   .+.+| .|||+++.++..-.++...     .+++.++..|..+++.+...|..|+.++.
T Consensus       464 l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~-----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~  524 (960)
T 1wa5_C          464 LTSNNIPHIILRVDAIKYIYTFRNQLTKAQLI-----ELMPILATFLQTDEYVVYTYAAITIEKIL  524 (960)
T ss_dssp             HHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hcCCCCCCceehHHHHHHHHHHHhhCCHHHHH-----HHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            4555   88999 9999999998754333322     36778888888778899999999999864

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=86.08  E-value=1  Score=36.39  Aligned_cols=68  Identities=25%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             ccHHHHHHHhcc----------CChHHH-HHHHHHHHhccCCCHHHHHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHh
Q 044025           35 NIILLLVHLLQH----------AELEIK-EATWAISSATYGGSHEHIQFLV-SQGYIKPLCDLLVCSDQRIVTVCLNGNR  102 (129)
Q Consensus        35 g~lp~L~~ll~~----------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv-~~g~i~~l~~lL~~~d~~~~~~aL~al~  102 (129)
                      .++..|+++|++          .|+.+. =||.-|+..+.. -|+ -+.++ +.|+=..++.||.++|+++...||.|+.
T Consensus       395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ  472 (480)
T 1ho8_A          395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ  472 (480)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-Ccc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            577889999973          377888 999999999976 344 33454 6699999999999999999999999998


Q ss_pred             hc
Q 044025          103 KL  104 (129)
Q Consensus       103 ni  104 (129)
                      .+
T Consensus       473 kl  474 (480)
T 1ho8_A          473 AI  474 (480)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=85.19  E-value=3  Score=32.20  Aligned_cols=64  Identities=9%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             HHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           40 LVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        40 L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      +++-|.+++.+.+ .+.+-|..+... +.+-+..+++.+.+..|+......+...+..+|.|++++
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~-D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~L  187 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQE-DKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQL  187 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHT-CTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhc-chHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            4455667777778 999999996553 447788999999999999999999999999999999987

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=84.54  E-value=4.2  Score=33.32  Aligned_cols=87  Identities=10%  Similarity=-0.065  Sum_probs=61.9

Q ss_pred             CCChHHHHHHH-HHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhh
Q 044025            9 KLPLSKLKENT-LDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDL   85 (129)
Q Consensus         9 ~~~~~~~r~~w-~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~l   85 (129)
                      +......|-+. ++++++. +-+.+  --++..+.+=|.++++.+| -|..+++++..   ++-.++     ++|.+..+
T Consensus        85 s~~~~~Krl~YL~l~~~~~~~~e~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~~-----l~~~v~~~  154 (621)
T 2vgl_A           85 SNRYTEKQIGYLFISVLVNSNSELI--RLINNAIKNDLASRNPTFMGLALHCIANVGS---REMAEA-----FAGEIPKI  154 (621)
T ss_dssp             CSCHHHHHHHHHHHHHSCCCCHHHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHHH-----HTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccCCcHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHHH-----HHHHHHHH
Confidence            34445555554 7777766 22222  1145566667788899999 99999999964   454443     56888898


Q ss_pred             c--CCCCHHHHHHHHHHHhhcc
Q 044025           86 L--VCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        86 L--~~~d~~~~~~aL~al~ni~  105 (129)
                      |  .+.++.+...|+-++.++.
T Consensus       155 l~~~d~~~~VRK~A~~al~kl~  176 (621)
T 2vgl_A          155 LVAGDTMDSVKQSAALCLLRLY  176 (621)
T ss_dssp             HHCSSSCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHHHH
Confidence            8  8899999999999998763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=80.50  E-value=7.9  Score=29.80  Aligned_cols=61  Identities=15%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ++..+.+=++++++-+| -|..+++++....   -+++     +.+++...|.+.+|.+...|+-+..++
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL  166 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQA-----IERYMKQAIVDKVPSVSSSALVSSLHL  166 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            45666677778888888 8888888888763   3333     345677888888899999888888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	7e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-12

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (148), Expect = 7e-13
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 12/115 (10%)

Query: 27  CMYTVIVANIILLLVHLLQHAELEI-KEATWAISSATYGGSH--EHIQFLVSQGYIKPLC 83
            +  VI AN+I  LV LL+ AE +  KEA WAIS+A+ GG    + I++LVSQG IKPLC
Sbjct: 364 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 423

Query: 84  DLLVCSDQRIVTVCLNGNRKL---------GMDNRVNVYTQMINECDGLDKIENL 129
           DLL  +D RI+ V L+    +              +N     I +  G++KI N 
Sbjct: 424 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC 478

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.2 bits (144), Expect = 3e-12
 Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 18  NTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIKEATWAISSATYGGSHEHIQFLVSQG 77
           N            V    +  L+  L +      KEA WAI++ T GG+ E I +LV  G
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 357

Query: 78  YIKPLCDLLVCSDQRIVTVCLNGNRKL----GMDNRVNVYTQMINECDGLDKIENL 129
            I+PL +LL   D +I+ V L+    +             + MI EC GLDKIE L
Sbjct: 358 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 413

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.75
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.72
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.54
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.45
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.35
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.34
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.05
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.88
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.02
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.92
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.63
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.6
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.31
d1b3ua_	588	Constant regulatory domain of protein phosphatase	96.29
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.02
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	95.9
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.52
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.19
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.02
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	92.43
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	92.19
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.27
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	90.55
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	89.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	89.02
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	88.36
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	85.56
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	83.98

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=3.2e-18  Score=133.92  Aligned_cols=118  Identities=42%  Similarity=0.557  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCC--HHHHHHHHhcCChHHHHh
Q 044025           12 LSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGS--HEHIQFLVSQGYIKPLCD   84 (129)
Q Consensus        12 ~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~--~~~i~~lv~~g~i~~l~~   84 (129)
                      ......+|+++|+++    +++.+++.|++|.+++++.++++++| +|+|+++|++.+++  ++++.++++.|++++|++
T Consensus       345 ~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~  424 (503)
T d1wa5b_         345 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD  424 (503)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHH
Confidence            334455699999998    77888999999999999999999999 99999999997654  467899999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHhhccc---------CCCChHHHHHHHhccchhhhcCC
Q 044025           85 LLVCSDQRIVTVCLNGNRKLGM---------DNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        85 lL~~~d~~~~~~aL~al~ni~~---------~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      +|...|++++..+|++|.++.+         ....+++...++++||+++|+.|
T Consensus       425 ~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~L  478 (503)
T d1wa5b_         425 LLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC  478 (503)
T ss_dssp             HTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999998732         22457889999999999999865

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.6e-17  Score=126.44  Aligned_cols=117  Identities=35%  Similarity=0.538  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcC
Q 044025           13 SKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLV   87 (129)
Q Consensus        13 ~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~   87 (129)
                      .....+|+++|+++    ..+.+++.|++|.+++++.++++++| +|+|+++|++.+++++++.++++.|++++|+++|.
T Consensus       288 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~  367 (434)
T d1q1sc_         288 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS  367 (434)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred             hhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhc
Confidence            33345589999998    56778899999999999999999999 99999999999888889999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhccc----CCCChHHHHHHHhccchhhhcCC
Q 044025           88 CSDQRIVTVCLNGNRKLGM----DNRVNVYTQMINECDGLDKIENL  129 (129)
Q Consensus        88 ~~d~~~~~~aL~al~ni~~----~~~~~~~~~~i~e~ggl~~le~L  129 (129)
                      ..|++++..+++++.++.+    .+.+++++..++++||++.|+.|
T Consensus       368 ~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L  413 (434)
T d1q1sc_         368 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL  413 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999998732    44577899999999999998754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=2.3e-14  Score=108.63  Aligned_cols=122  Identities=17%  Similarity=0.273  Sum_probs=102.8

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH-----hHHHHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHh
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV-----CMYTVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVS   75 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~   75 (129)
                      |..++.+++.....++.++.++..     .++.++++|++|.|+++|++ +++++| +|+|+|+|++.+ +++..+.+++
T Consensus        19 v~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~-~~~~~~~i~~   97 (434)
T d1q1sc_          19 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-TSEQTKAVVD   97 (434)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS-CHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC-ChhhhhHhhh
Confidence            344556666777777788888865     47889999999999999975 467899 999999999987 5577888999


Q ss_pred             cCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           76 QGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        76 ~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      .|++|+|+.+|.++++++...++++++|+..  ..+.+...+.+.|+++.+.
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~--~~~~~~~~i~~~~~~~~l~  147 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAG--DGSAFRDLVIKHGAIDPLL  147 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTCHHHHH
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhc--cchHHHHHHHHhhhhhHHH
Confidence            9999999999999999999999999999953  4667788899999987663

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=2e-13  Score=106.32  Aligned_cols=117  Identities=15%  Similarity=0.254  Sum_probs=97.5

Q ss_pred             CCChHHHHHHHHHHHhhH-----hHHHHHhhccHHHHHHHhccC-ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHH
Q 044025            9 KLPLSKLKENTLDSNIVV-----CMYTVIVANIILLLVHLLQHA-ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKP   81 (129)
Q Consensus         9 ~~~~~~~r~~w~lsNI~~-----qiq~vi~~g~lp~L~~ll~~~-~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~   81 (129)
                      ++....+.++..+.++..     .++.++++|++|.|++++++. +.++| +|+|+++|++.+ ++++...+++.|++|.
T Consensus        88 ~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~-~~~~~~~~~~~g~i~~  166 (503)
T d1wa5b_          88 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASG-TSAQTKVVVDADAVPL  166 (503)
T ss_dssp             SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHhCCChHH
Confidence            333444455556666543     588999999999999999864 77899 999999999987 5678888899999999


Q ss_pred             HHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           82 LCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        82 l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      ++.+|.+++.++...++++++|++.  ....+++.+.++|+++.+..
T Consensus       167 l~~lL~s~~~~i~~~a~~~L~nia~--~~~~~r~~l~~~~~~~~L~~  211 (503)
T d1wa5b_         167 FIQLLYTGSVEVKEQAIWALGNVAG--DSTDYRDYVLQCNAMEPILG  211 (503)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHhh--hhHHHHHHHHhhcccccchh
Confidence            9999999999999999999999963  56788899999999988753

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-12  Score=95.38  Aligned_cols=102  Identities=15%  Similarity=0.102  Sum_probs=86.1

Q ss_pred             cccCCCCChHHHH-HHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            4 QQKNPKLPLSKLK-ENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         4 ~~~~~~~~~~~~r-~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      ..+.++.+....+ .+|+++|+++    ..+.+...|.+|.|++++++++.+++ .++|+|.|++.+ +++....+++.|
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~  186 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHhh
Confidence            3344444454444 4589999998    35566789999999999999999999 999999999987 557778889999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHhhccc
Q 044025           78 YIKPLCDLLVCSDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        78 ~i~~l~~lL~~~d~~~~~~aL~al~ni~~  106 (129)
                      ++|.|+.+|.++|+.++..++++|.++..
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999853

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.9e-12  Score=93.14  Aligned_cols=120  Identities=11%  Similarity=0.008  Sum_probs=96.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhhH---hHH-HHHhhccHHHHHHHhcc-CChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            5 QKNPKLPLSKLKENTLDSNIVV---CMY-TVIVANIILLLVHLLQH-AELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         5 ~~~~~~~~~~~r~~w~lsNI~~---qiq-~vi~~g~lp~L~~ll~~-~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      .++.+.+....+++|+++|++.   ..| .+.+.|++|.|+.++.+ .++.+| .|+|+++|++.+ ++.....+.+.|.
T Consensus        67 ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~g  145 (264)
T d1xqra1          67 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDG  145 (264)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhh
Confidence            3444444455566789999998   344 45689999999999975 578999 999999999987 4455667789999


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      ++.+..+|.+.++++...+++++.++..  +.+.....+.+.|+++.+.
T Consensus       146 i~~L~~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~v~~L~  192 (264)
T d1xqra1         146 FSVLMRAMQQQVQKLKVKSAFLLQNLLV--GHPEHKGTLCSMGMVQQLV  192 (264)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHTTHHHHHH
T ss_pred             hhHHHHHHhcCchHHHHHHHHHHHHHHh--ccHHHHHHHHHhhhHHHHH
Confidence            9999999999999999999999999853  3455567788889888764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=101.92  Aligned_cols=119  Identities=10%  Similarity=0.036  Sum_probs=97.6

Q ss_pred             cCCCCChHHHHH-HHHHHHhhH---hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChH
Q 044025            6 KNPKLPLSKLKE-NTLDSNIVV---CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIK   80 (129)
Q Consensus         6 ~~~~~~~~~~r~-~w~lsNI~~---qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~   80 (129)
                      +.+.......+. ++++.+++.   ..+.+++.|.+|.|+.+|++++++++ .|+|+|+|++.+.. ...+.+.+.|++|
T Consensus        68 L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~~~~g~i~  146 (529)
T d1jdha_          68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQ  146 (529)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-hhhhHHHhcCCch
Confidence            333333444444 479999998   45678899999999999999999999 99999999998733 4445667899999


Q ss_pred             HHHhhcCCCCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhc
Q 044025           81 PLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIE  127 (129)
Q Consensus        81 ~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le  127 (129)
                      +|+.+|.++++.+...+.+++.++..  .+++....+.+.|+++.+.
T Consensus       147 ~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~~~~L~  191 (529)
T d1jdha_         147 KMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALV  191 (529)
T ss_dssp             HHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHccChHHHHHHHHHHHHHhh--hhhHHHHHHHhcccchHHH
Confidence            99999999999999999999999853  4677788889999887764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3e-12  Score=94.84  Aligned_cols=90  Identities=18%  Similarity=0.181  Sum_probs=79.7

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcccCCCChHH
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLGMDNRVNVY  113 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~~~~~~~~~  113 (129)
                      +.+|.|+++|+++++++| .|+++|+|++.+ +++.-+.+.+.|+||+|+++|.+++++++..++++|+|+..  +..+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~   78 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ-DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTN   78 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSS-CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHH
Confidence            468999999999999999 999999999987 44666788899999999999999999999999999999953  46667


Q ss_pred             HHHHHhccchhhhc
Q 044025          114 TQMINECDGLDKIE  127 (129)
Q Consensus       114 ~~~i~e~ggl~~le  127 (129)
                      ...+.+.||++.+-
T Consensus        79 ~~~i~~~g~v~~li   92 (457)
T d1xm9a1          79 KLETRRQNGIREAV   92 (457)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHCCChHHHH
Confidence            78899999998764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.5e-12  Score=93.86  Aligned_cols=103  Identities=16%  Similarity=0.031  Sum_probs=87.8

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      |..|+.+++.....++++|.|+|.    .-+.+.+.|.+|.|+++|+++++++| .|+|+|.|++.+ +++....+.+.|
T Consensus         8 v~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~~i~~~g   86 (457)
T d1xm9a1           8 VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLETRRQN   86 (457)
T ss_dssp             HHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCC
Confidence            445666777788888899999997    46667799999999999999999999 999999999976 445556778999


Q ss_pred             ChHHHHhhcCC-CCHHHHHHHHHHHhhccc
Q 044025           78 YIKPLCDLLVC-SDQRIVTVCLNGNRKLGM  106 (129)
Q Consensus        78 ~i~~l~~lL~~-~d~~~~~~aL~al~ni~~  106 (129)
                      .++.++.++.. .++.+...+++++.++..
T Consensus        87 ~v~~li~~l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          87 GIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             CHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHhccCcHHHHHHHHHHHHHHHh
Confidence            99999998864 778899999999999864

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-10  Score=90.28  Aligned_cols=122  Identities=14%  Similarity=0.181  Sum_probs=96.4

Q ss_pred             ccccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcC
Q 044025            3 IQQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQG   77 (129)
Q Consensus         3 i~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g   77 (129)
                      +..++..++......+|+|.|++.    ..+.+.+.|.+|.|+.+|++++.+++ .++|++.+++.+ +.+....+++.|
T Consensus       107 i~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~  185 (529)
T d1jdha_         107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQESKLIILASG  185 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTT
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh-hhHHHHHHHhcc
Confidence            344555555555556689999998    34556689999999999999999999 999999999987 445566778999


Q ss_pred             ChHHHHhhcCC-CCHHHHHHHHHHHhhcccCCCChHHHHHHHhccchhhhcC
Q 044025           78 YIKPLCDLLVC-SDQRIVTVCLNGNRKLGMDNRVNVYTQMINECDGLDKIEN  128 (129)
Q Consensus        78 ~i~~l~~lL~~-~d~~~~~~aL~al~ni~~~~~~~~~~~~i~e~ggl~~le~  128 (129)
                      .++++..+|.+ ++..++..+.+++.++..   .++....+.+.|+++.+..
T Consensus       186 ~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~---~~~~~~~~~~~g~~~~L~~  234 (529)
T d1jdha_         186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSV---CSSNKPAIVEAGGMQALGL  234 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTT---STTHHHHHHHTTHHHHHHT
T ss_pred             cchHHHHHHHhhhhHHHHHHHHHHHhhhhc---cccccchhhhhhhhhhHHH
Confidence            99999999965 557888889999999863   3444567888899887654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.05  E-value=3.8e-06  Score=52.62  Aligned_cols=71  Identities=11%  Similarity=0.014  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCH
Q 044025           13 SKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQ   91 (129)
Q Consensus        13 ~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~   91 (129)
                      .....+|+++++..       .+.+|.|..+|++.++.+| +|+|+|+.+.   +++         +++.+..++..+++
T Consensus        38 vR~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~   98 (111)
T d1te4a_          38 IRGAAAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTG   98 (111)
T ss_dssp             HHHHHHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCT
T ss_pred             HHHHHHHHHHhcch-------hhhHHHHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCH
Confidence            33334467776542       2356777788888888888 8888887763   211         45666677777778


Q ss_pred             HHHHHHHHHHh
Q 044025           92 RIVTVCLNGNR  102 (129)
Q Consensus        92 ~~~~~aL~al~  102 (129)
                      .++..++.+|.
T Consensus        99 ~vr~~A~~aL~  109 (111)
T d1te4a_          99 FARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHHHH
Confidence            88777777765

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.88  E-value=1.1e-05  Score=50.39  Aligned_cols=60  Identities=18%  Similarity=0.277  Sum_probs=51.0

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ...++.|+..|.++++.+| .|+|+++++...            +++|.|..+|.++|+.++..++++|+.+.
T Consensus        21 ~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~   81 (111)
T d1te4a_          21 DEAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RAVEPLIKLLEDDSGFVRSGAARSLEQIG   81 (111)
T ss_dssp             STTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhcchh------------hhHHHHHhhhccchhHHHHHHHHHHHHhC
Confidence            3467889999999999999 999999887532            24678889999999999999999999883

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00041  Score=56.29  Aligned_cols=99  Identities=11%  Similarity=0.030  Sum_probs=66.3

Q ss_pred             cccCCCCChHHHHHHHHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCC
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGY   78 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~   78 (129)
                      ..++...+.....++|+++.++.    +...-.-..+++.+...+.+.++++| .||||+.+++....++...|+  ..+
T Consensus       443 ~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~i  520 (888)
T d1qbkb_         443 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYI  520 (888)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHH
Confidence            34444455555567799999987    22222236789999999999999999 999999999864332222222  135


Q ss_pred             hHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           79 IKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        79 i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ++.+...+...+.+....++++++.+
T Consensus       521 l~~l~~~l~~~~~~~~~~~~~al~~l  546 (888)
T d1qbkb_         521 LDTLVFAFSKYQHKNLLILYDAIGTL  546 (888)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            56777777766666666677777654

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0009  Score=48.69  Aligned_cols=71  Identities=10%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ..++|.+.+.+++++.++| .|+.+++.++.+...+.+...+ ..++|.+...++++++.++..|+++++++.
T Consensus       364 ~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            3477888888999999999 9999999999764323322212 357899999999999999999999999874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.015  Score=44.28  Aligned_cols=68  Identities=6%  Similarity=-0.001  Sum_probs=43.5

Q ss_pred             hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           33 VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        33 ~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ...++|.+.++++++.+.|| .|++++.++...-+++..    +..+.|.+-.+++.+|.++...|.+|+..+
T Consensus       517 ~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~----~~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            35577777777777777777 777777777654332222    222345555566667777777777777654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0029  Score=51.08  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             HHHHHH--HHHHHhhH-hHHHHH--hhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHH-HHHHHHhcCChHHHHhh
Q 044025           13 SKLKEN--TLDSNIVV-CMYTVI--VANIILLLVHLLQHAELEIK-EATWAISSATYGGSHE-HIQFLVSQGYIKPLCDL   85 (129)
Q Consensus        13 ~~~r~~--w~lsNI~~-qiq~vi--~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~-~i~~lv~~g~i~~l~~l   85 (129)
                      +..|++  .+++.|+. -.+.+.  -..++|.++..+++.++.+| .|+|+++.++....++ +-.+  -..+++.+...
T Consensus       409 ~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~--~~~~l~~ll~~  486 (888)
T d1qbkb_         409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKR  486 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH--TTTHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhHHHHHHH
Confidence            444543  38888776 222221  14678999999999999999 9999999887531111 1112  24578888888


Q ss_pred             cCCCCHHHHHHHHHHHhhc
Q 044025           86 LVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        86 L~~~d~~~~~~aL~al~ni  104 (129)
                      +..+++++...+++++.++
T Consensus       487 l~d~~~~V~~~a~~al~~l  505 (888)
T d1qbkb_         487 ILDSNKRVQEAACSAFATL  505 (888)
T ss_dssp             HSSSCHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHH
Confidence            8888999999999999876

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.0078  Score=41.05  Aligned_cols=87  Identities=6%  Similarity=0.017  Sum_probs=51.6

Q ss_pred             cccCCCCChHHHHHHHHHHHhhHhHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHH
Q 044025            4 QQKNPKLPLSKLKENTLDSNIVVCMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPL   82 (129)
Q Consensus         4 ~~~~~~~~~~~~r~~w~lsNI~~qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l   82 (129)
                      ..++..++.....++.+|..+..       ..++|.+++++++.++.+| .|+++|+++......+.  .     .++.+
T Consensus        26 ~~L~d~~~~vR~~A~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~--~-----~~~~l   91 (276)
T d1oyza_          26 RLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED--N-----VFNIL   91 (276)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--H-----HHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHhhCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc--c-----hHHHH
Confidence            34443334343334456666532       3467999999999999999 99999998875432111  0     11122


Q ss_pred             Hh-hcCCCCHHHHHHHHHHHhhc
Q 044025           83 CD-LLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        83 ~~-lL~~~d~~~~~~aL~al~ni  104 (129)
                      .. +++.+++.+...++.+++++
T Consensus        92 ~~~~l~d~~~~vr~~a~~aL~~~  114 (276)
T d1oyza_          92 NNMALNDKSACVRATAIESTAQR  114 (276)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCChhHHHHHHHHHHHH
Confidence            22 33456666666666666654

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0078  Score=45.87  Aligned_cols=86  Identities=9%  Similarity=0.085  Sum_probs=60.5

Q ss_pred             HHHHHhhH-hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHH
Q 044025           19 TLDSNIVV-CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTV   96 (129)
Q Consensus        19 w~lsNI~~-qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~   96 (129)
                      .++++++. --.......++|.+..++++.+.++| .|+++++.++.....+......-..++|.+..++...++.+...
T Consensus       264 ~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~  343 (588)
T d1b3ua_         264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA  343 (588)
T ss_dssp             HTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHH
T ss_pred             HhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHH
Confidence            47788776 22233446789999999999999999 99999999886432222222233457788888887778887777


Q ss_pred             HHHHHhhc
Q 044025           97 CLNGNRKL  104 (129)
Q Consensus        97 aL~al~ni  104 (129)
                      +..++..+
T Consensus       344 ~~~~l~~~  351 (588)
T d1b3ua_         344 LASVIMGL  351 (588)
T ss_dssp             HHTTGGGG
T ss_pred             HHHHHhhh
Confidence            77766554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.012  Score=40.12  Aligned_cols=60  Identities=5%  Similarity=-0.121  Sum_probs=50.3

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ....+.|.++|+++++.+| .|+.+|..+.   ++         .++|.+..++.++|+.+...++.+|+++.
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~---~~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~   78 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG---GQ---------DAVRLAIEFCSDKNYIRRDIGAFILGQIK   78 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC---CH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC---CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            3456778999999999999 9999998764   21         24688899999999999999999998874

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.072  Score=43.52  Aligned_cols=70  Identities=14%  Similarity=0.072  Sum_probs=57.1

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhcc
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKLG  105 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni~  105 (129)
                      ..++|.|...+.++++.+| .|+.++.++..... +.+...+ ...+++|+..|..+|..+++.++.++..+.
T Consensus       961 ~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~-~~~~~~l-~~li~~ll~~l~d~~~~vR~~al~~l~~~~ 1031 (1207)
T d1u6gc_         961 ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-QPIDPLL-KNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031 (1207)
T ss_dssp             GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC-CTHHHHH-HHHSTTTHHHHSSSSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc-hhhHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            5689999999999999999 99999999887633 3333333 237888899999999999999999997653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.23  Score=35.25  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             hccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           34 ANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        34 ~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      ..+++.+...+.++  +.++| .|..+++++..................+.+..++..+++++...+++++.++
T Consensus       170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i  243 (458)
T d1ibrb_         170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI  243 (458)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHH
Confidence            45788888888765  56899 9999999998763221111223334667778888889999999999999776

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.43  E-value=0.86  Score=34.75  Aligned_cols=68  Identities=9%  Similarity=0.110  Sum_probs=53.3

Q ss_pred             cHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           36 IILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        36 ~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      +.+.+...+.+.+...| .|+.+++.++.+.+.......+ ..+++.+...+..+++.++..++++++++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l  438 (861)
T d2bpta1         370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRI  438 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHH
Confidence            34555666778899999 9999999999876544444333 24788999999999999999999999876

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.19  E-value=0.27  Score=37.72  Aligned_cols=86  Identities=9%  Similarity=0.098  Sum_probs=58.3

Q ss_pred             HHH-HHHHHhhH----hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCC-
Q 044025           16 KEN-TLDSNIVV----CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVC-   88 (129)
Q Consensus        16 r~~-w~lsNI~~----qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~-   88 (129)
                      ..+ .++++++.    .....+ ..++|.+...+++.++.++ .|+.+++.++.... +.+...+ ..+++.+...+.. 
T Consensus       616 ~~~l~~l~~l~~~~~~~~~~~l-~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~-~~~~~~~-~~i~~~L~~~l~~~  692 (861)
T d2bpta1         616 DDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-EDFRRYS-DAMMNVLAQMISNP  692 (861)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GGGHHHH-HHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHH-HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH-HHhHhhH-HHHHHHHHHHhCCC
Confidence            344 48888877    222222 4688999999999999999 99999999886532 3322222 2367777777754 


Q ss_pred             -CCHHHHHHHHHHHhhc
Q 044025           89 -SDQRIVTVCLNGNRKL  104 (129)
Q Consensus        89 -~d~~~~~~aL~al~ni  104 (129)
                       .+..+...++.+++.+
T Consensus       693 ~~~~~~k~~~~~~l~~i  709 (861)
T d2bpta1         693 NARRELKPAVLSVFGDI  709 (861)
T ss_dssp             TCCTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence             3455666778888765

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.86  Score=34.97  Aligned_cols=69  Identities=10%  Similarity=0.148  Sum_probs=55.0

Q ss_pred             ccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           35 NIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        35 g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      .++|.+.+.+.+++.+.| .++++++.+..+.........+ ..+++.+...+..+++.+...++++++++
T Consensus       366 ~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~  435 (876)
T d1qgra_         366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRI  435 (876)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            356677777888999999 9999999998876555444333 34788899999999999999999999875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.84  Score=35.05  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             CCCChHHHHHHH-HHHHhhH--hHHHH--HhhccHHHHHHHhccC--ChHHH-HHHHHHHHhccCCCHHHHHHHHhcCCh
Q 044025            8 PKLPLSKLKENT-LDSNIVV--CMYTV--IVANIILLLVHLLQHA--ELEIK-EATWAISSATYGGSHEHIQFLVSQGYI   79 (129)
Q Consensus         8 ~~~~~~~~r~~w-~lsNI~~--qiq~v--i~~g~lp~L~~ll~~~--~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i   79 (129)
                      |+.+......+. +++.|+.  .-...  .-..++|.+++.+.+.  +.++| .|..++.+................-++
T Consensus       140 ~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~  219 (876)
T d1qgra_         140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM  219 (876)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            333444444444 8888876  11111  1246789999988765  46889 999999988765332211112222356


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHhhc
Q 044025           80 KPLCDLLVCSDQRIVTVCLNGNRKL  104 (129)
Q Consensus        80 ~~l~~lL~~~d~~~~~~aL~al~ni  104 (129)
                      +.+...+.++++++...+++++..+
T Consensus       220 ~~l~~~~~~~~~~v~~~~~~~l~~l  244 (876)
T d1qgra_         220 QVVCEATQCPDTRVRVAALQNLVKI  244 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            7788888889999999999998765

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.52  Score=38.24  Aligned_cols=65  Identities=11%  Similarity=0.263  Sum_probs=50.2

Q ss_pred             hccHHHHHHHhccCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025           34 ANIILLLVHLLQHAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK  103 (129)
Q Consensus        34 ~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n  103 (129)
                      ..+++.+..+|++.+++|| .|+-+++-++.....++..+     +++.|+..+..++......+..++..
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~-----l~~~L~~~l~~~~~~~r~~~~~~L~~  109 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKEQLRDISSIGLKT  109 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHH-----HHHHHHHHhcCCchhhhHHHHHHHHH
Confidence            4578999999999999999 99999999988766566655     45678887777676666666555543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.36  E-value=0.3  Score=37.57  Aligned_cols=69  Identities=28%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             ccHHHHHHHhc----------cCChHHH-HHHHHHHHhccCCCHHHHHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHhh
Q 044025           35 NIILLLVHLLQ----------HAELEIK-EATWAISSATYGGSHEHIQFLVSQGYIKPLCDLLVCSDQRIVTVCLNGNRK  103 (129)
Q Consensus        35 g~lp~L~~ll~----------~~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~g~i~~l~~lL~~~d~~~~~~aL~al~n  103 (129)
                      .++..|+++|+          +.|+.+. =||.-|+.++.. -|.-...+-+.|+=..++.+|+++|+++...||.|+..
T Consensus       392 ~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~-~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk  470 (477)
T d1ho8a_         392 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA  470 (477)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            56788899986          3477788 999999999976 33333333356998999999999999999999999987


Q ss_pred             c
Q 044025          104 L  104 (129)
Q Consensus       104 i  104 (129)
                      +
T Consensus       471 l  471 (477)
T d1ho8a_         471 I  471 (477)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.56  E-value=0.77  Score=36.08  Aligned_cols=52  Identities=12%  Similarity=0.035  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhhH--hHHHHHhhccHHHHHHHhccCChHHH-HHHHHHHHhccC
Q 044025           11 PLSKLKENTLDSNIVV--CMYTVIVANIILLLVHLLQHAELEIK-EATWAISSATYG   64 (129)
Q Consensus        11 ~~~~~r~~w~lsNI~~--qiq~vi~~g~lp~L~~ll~~~~~~v~-eA~wal~Ni~~~   64 (129)
                      +....|.+|+++..+.  .-+..  ..+++.++..|.+.+..+| .|+||+.+++..
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~  526 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTI  526 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHh
Confidence            3444556799999887  22222  5789999999999999999 999999999753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.98  E-value=3  Score=31.70  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             HHHHhhH--hHHHHH---hhccHHHHHHHhcc-----------------CChHHH-HHHHHHHHhccCCCHHHHHHHHhc
Q 044025           20 LDSNIVV--CMYTVI---VANIILLLVHLLQH-----------------AELEIK-EATWAISSATYGGSHEHIQFLVSQ   76 (129)
Q Consensus        20 ~lsNI~~--qiq~vi---~~g~lp~L~~ll~~-----------------~~~~v~-eA~wal~Ni~~~~~~~~i~~lv~~   76 (129)
                      +++.+.+  +.+.++   +...++.++++|+.                 ..+.++ +++.++==++-.  ++-...+.+.
T Consensus       188 ~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~~~  265 (477)
T d1ho8a_         188 LLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN--PVFANELVQK  265 (477)
T ss_dssp             HHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS--HHHHHHHHTT
T ss_pred             HHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC--HHHHHHHHHh
Confidence            4555544  333332   44566777777654                 134566 776655555543  3555666665


Q ss_pred             --CChHHHHhhcC-CCCHHHHHHHHHHHhhcccCCC---ChHHHHHHHhccchhhhc
Q 044025           77 --GYIKPLCDLLV-CSDQRIVTVCLNGNRKLGMDNR---VNVYTQMINECDGLDKIE  127 (129)
Q Consensus        77 --g~i~~l~~lL~-~~d~~~~~~aL~al~ni~~~~~---~~~~~~~i~e~ggl~~le  127 (129)
                        +.++.+++++. +...++++.++-++.|+.....   .......+..+++++.++
T Consensus       266 ~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~  322 (477)
T d1ho8a_         266 YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQ  322 (477)
T ss_dssp             SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHH
Confidence              46999999885 5789999999999999853221   223445677888776654